Query 011983
Match_columns 473
No_of_seqs 408 out of 2952
Neff 6.5
Searched_HMMs 46136
Date Fri Mar 29 07:22:24 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011983.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011983hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00020 ribulose bisphosphate 100.0 1.3E-90 2.7E-95 701.1 34.5 410 9-421 2-413 (413)
2 KOG0651 26S proteasome regulat 100.0 3.1E-58 6.8E-63 451.1 10.4 374 1-417 1-387 (388)
3 COG1222 RPT1 ATP-dependent 26S 100.0 1.6E-44 3.5E-49 361.0 18.6 190 152-358 180-375 (406)
4 KOG0733 Nuclear AAA ATPase (VC 100.0 1.5E-42 3.3E-47 363.6 18.4 239 151-416 539-789 (802)
5 KOG0730 AAA+-type ATPase [Post 100.0 3.3E-40 7.3E-45 350.1 18.0 221 152-411 463-689 (693)
6 KOG0736 Peroxisome assembly fa 100.0 2.1E-39 4.5E-44 347.0 19.9 240 152-415 700-951 (953)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 5.9E-39 1.3E-43 336.7 17.4 198 149-362 215-418 (802)
8 KOG0726 26S proteasome regulat 100.0 1.7E-39 3.7E-44 316.7 11.6 273 61-362 74-413 (440)
9 KOG0738 AAA+-type ATPase [Post 100.0 6E-37 1.3E-41 308.5 16.9 242 153-416 240-489 (491)
10 KOG0734 AAA+-type ATPase conta 100.0 8.1E-37 1.7E-41 316.6 14.1 183 152-354 332-520 (752)
11 KOG0727 26S proteasome regulat 100.0 4.1E-35 8.9E-40 281.5 13.8 190 152-358 184-379 (408)
12 KOG0735 AAA+-type ATPase [Post 100.0 3.1E-34 6.7E-39 305.0 16.5 194 153-366 697-896 (952)
13 KOG0731 AAA+-type ATPase conta 100.0 3.9E-34 8.5E-39 311.5 13.4 220 123-363 310-541 (774)
14 KOG0728 26S proteasome regulat 100.0 8.5E-33 1.8E-37 265.3 16.4 190 152-358 176-371 (404)
15 KOG0652 26S proteasome regulat 100.0 4.4E-33 9.6E-38 268.6 12.8 191 151-358 199-395 (424)
16 KOG0729 26S proteasome regulat 100.0 1.1E-32 2.3E-37 266.6 14.3 189 152-357 206-400 (435)
17 TIGR01243 CDC48 AAA family ATP 100.0 3.5E-32 7.6E-37 304.5 20.5 238 152-415 482-729 (733)
18 KOG0739 AAA+-type ATPase [Post 100.0 1.3E-32 2.8E-37 269.4 14.2 248 149-417 158-437 (439)
19 COG0465 HflB ATP-dependent Zn 100.0 4.5E-32 9.7E-37 290.9 18.7 231 153-402 179-421 (596)
20 COG0464 SpoVK ATPases of the A 100.0 6E-32 1.3E-36 290.1 18.7 188 153-360 272-467 (494)
21 KOG0741 AAA+-type ATPase [Post 100.0 1.9E-32 4.2E-37 283.9 11.1 196 152-362 251-462 (744)
22 CHL00195 ycf46 Ycf46; Provisio 100.0 3.3E-31 7E-36 282.5 17.6 180 152-352 254-441 (489)
23 TIGR03689 pup_AAA proteasome A 100.0 4.3E-31 9.4E-36 281.7 18.4 239 151-419 210-498 (512)
24 COG1223 Predicted ATPase (AAA+ 100.0 3.4E-31 7.3E-36 255.5 15.3 198 141-362 132-338 (368)
25 KOG0737 AAA+-type ATPase [Post 100.0 6.6E-31 1.4E-35 264.5 15.7 226 154-399 124-359 (386)
26 PTZ00454 26S protease regulato 100.0 1.7E-30 3.8E-35 271.2 16.6 191 151-358 173-369 (398)
27 PRK03992 proteasome-activating 100.0 7E-30 1.5E-34 266.6 17.7 191 151-358 159-355 (389)
28 CHL00206 ycf2 Ycf2; Provisiona 100.0 9.6E-30 2.1E-34 293.7 15.3 183 153-358 1626-1860(2281)
29 TIGR01241 FtsH_fam ATP-depende 100.0 1.7E-29 3.6E-34 271.4 15.1 185 152-355 83-275 (495)
30 PTZ00361 26 proteosome regulat 100.0 4.4E-29 9.5E-34 262.8 14.0 190 152-358 212-407 (438)
31 KOG0730 AAA+-type ATPase [Post 100.0 1.4E-28 3E-33 261.9 16.1 241 152-418 213-463 (693)
32 CHL00176 ftsH cell division pr 100.0 1.6E-28 3.4E-33 269.3 15.0 185 153-354 212-402 (638)
33 KOG0740 AAA+-type ATPase [Post 100.0 1.5E-28 3.3E-33 254.6 12.5 235 154-416 183-424 (428)
34 TIGR01242 26Sp45 26S proteasom 99.9 1.8E-27 3.9E-32 246.3 16.2 190 151-357 150-345 (364)
35 PRK10733 hflB ATP-dependent me 99.9 4.1E-27 8.9E-32 259.8 17.0 187 153-358 181-375 (644)
36 KOG0732 AAA+-type ATPase conta 99.9 5.5E-26 1.2E-30 253.7 15.8 186 152-357 294-491 (1080)
37 TIGR01243 CDC48 AAA family ATP 99.9 2.9E-24 6.2E-29 240.9 18.3 191 151-361 206-402 (733)
38 PF00004 AAA: ATPase family as 99.9 5.1E-23 1.1E-27 180.1 12.4 130 160-306 1-131 (132)
39 KOG0743 AAA+-type ATPase [Post 99.8 1.4E-19 3E-24 187.3 16.6 194 122-336 199-402 (457)
40 COG0466 Lon ATP-dependent Lon 99.8 8.6E-20 1.9E-24 196.6 15.7 232 79-336 282-537 (782)
41 KOG0742 AAA+-type ATPase [Post 99.8 9.1E-19 2E-23 178.2 14.9 172 127-320 354-529 (630)
42 KOG2004 Mitochondrial ATP-depe 99.8 1.8E-18 3.8E-23 185.8 17.6 210 86-321 377-598 (906)
43 KOG0744 AAA+-type ATPase [Post 99.8 1.2E-19 2.6E-24 180.2 7.3 153 154-320 174-341 (423)
44 TIGR00763 lon ATP-dependent pr 99.7 4.9E-17 1.1E-21 183.5 18.7 228 84-337 284-535 (775)
45 TIGR02881 spore_V_K stage V sp 99.7 2.2E-16 4.8E-21 156.4 19.3 151 155-332 40-206 (261)
46 CHL00181 cbbX CbbX; Provisiona 99.7 9.5E-17 2.1E-21 161.5 16.4 152 155-332 57-224 (287)
47 TIGR02880 cbbX_cfxQ probable R 99.7 6.6E-16 1.4E-20 155.1 17.7 151 156-332 57-223 (284)
48 PRK10787 DNA-binding ATP-depen 99.7 9E-16 2E-20 172.7 18.4 247 60-337 266-536 (784)
49 KOG0735 AAA+-type ATPase [Post 99.7 5.4E-16 1.2E-20 166.6 15.3 191 155-362 429-631 (952)
50 KOG0736 Peroxisome assembly fa 99.6 1E-14 2.2E-19 158.1 17.3 178 154-351 428-609 (953)
51 TIGR02639 ClpA ATP-dependent C 99.6 3.2E-15 6.9E-20 168.0 12.6 157 156-337 202-385 (731)
52 PF05496 RuvB_N: Holliday junc 99.6 6E-14 1.3E-18 135.2 15.0 154 155-335 48-210 (233)
53 COG2256 MGS1 ATPase related to 99.5 1.8E-13 3.9E-18 140.2 18.2 126 155-317 46-174 (436)
54 COG0464 SpoVK ATPases of the A 99.5 7.2E-14 1.6E-18 150.4 15.6 186 152-359 13-204 (494)
55 PRK11034 clpA ATP-dependent Cl 99.5 5.6E-14 1.2E-18 157.4 12.5 140 156-320 206-363 (758)
56 TIGR03345 VI_ClpV1 type VI sec 99.5 1.5E-13 3.2E-18 156.4 13.5 156 157-337 208-390 (852)
57 TIGR00390 hslU ATP-dependent p 99.5 4.6E-13 9.9E-18 139.7 15.8 156 155-316 45-343 (441)
58 PRK05201 hslU ATP-dependent pr 99.5 4.6E-13 9.9E-18 139.7 15.5 155 156-316 49-345 (443)
59 CHL00095 clpC Clp protease ATP 99.5 2.3E-13 5E-18 154.8 14.2 158 155-338 198-382 (821)
60 PRK10865 protein disaggregatio 99.5 1.1E-13 2.5E-18 157.6 11.7 139 157-320 199-355 (857)
61 PRK00080 ruvB Holliday junctio 99.5 3.8E-13 8.2E-18 137.6 13.6 157 155-338 49-214 (328)
62 TIGR03346 chaperone_ClpB ATP-d 99.5 4.5E-13 9.7E-18 153.0 15.4 157 156-337 193-376 (852)
63 PRK05342 clpX ATP-dependent pr 99.5 7.4E-13 1.6E-17 139.4 15.7 109 156-265 107-218 (412)
64 PRK04195 replication factor C 99.5 7.4E-13 1.6E-17 142.3 15.9 151 155-337 37-193 (482)
65 PHA02544 44 clamp loader, smal 99.5 1.5E-12 3.3E-17 131.8 17.3 149 155-337 41-200 (316)
66 PRK14956 DNA polymerase III su 99.5 1.4E-12 3E-17 138.6 16.6 145 155-333 38-209 (484)
67 PRK11034 clpA ATP-dependent Cl 99.4 1.7E-12 3.7E-17 145.7 17.6 146 155-320 485-667 (758)
68 TIGR00635 ruvB Holliday juncti 99.4 1.2E-12 2.7E-17 131.8 15.0 156 155-337 28-192 (305)
69 PRK07003 DNA polymerase III su 99.4 1E-12 2.2E-17 144.9 15.2 169 122-335 14-209 (830)
70 TIGR02639 ClpA ATP-dependent C 99.4 5.1E-12 1.1E-16 142.2 19.4 142 155-320 481-663 (731)
71 PRK12323 DNA polymerase III su 99.4 1.7E-12 3.7E-17 141.5 14.8 159 122-325 14-202 (700)
72 TIGR00382 clpX endopeptidase C 99.4 3E-12 6.5E-17 134.5 16.0 128 157-285 116-247 (413)
73 PRK14962 DNA polymerase III su 99.4 4.3E-12 9.4E-17 135.8 16.9 148 155-336 34-208 (472)
74 PRK13342 recombination factor 99.4 1.5E-11 3.2E-16 129.8 20.0 144 156-336 35-186 (413)
75 PRK07940 DNA polymerase III su 99.4 2.8E-12 6E-17 134.4 13.9 151 154-340 33-210 (394)
76 TIGR02640 gas_vesic_GvpN gas v 99.4 7.9E-12 1.7E-16 124.2 16.0 146 158-319 22-198 (262)
77 PRK14960 DNA polymerase III su 99.4 6.4E-12 1.4E-16 137.3 16.4 169 122-335 13-208 (702)
78 PRK14949 DNA polymerase III su 99.4 1.3E-11 2.8E-16 138.4 17.8 173 122-333 14-207 (944)
79 COG2255 RuvB Holliday junction 99.4 1.8E-11 3.8E-16 120.9 16.1 151 155-335 50-212 (332)
80 PLN03025 replication factor C 99.4 8E-12 1.7E-16 127.4 14.1 145 159-337 36-191 (319)
81 PRK14961 DNA polymerase III su 99.3 1.4E-11 3E-16 128.0 15.2 147 155-335 36-209 (363)
82 PRK07994 DNA polymerase III su 99.3 2E-11 4.3E-16 134.4 17.0 159 122-325 14-197 (647)
83 TIGR02928 orc1/cdc6 family rep 99.3 2.9E-11 6.2E-16 124.7 16.5 168 128-320 9-213 (365)
84 PRK00149 dnaA chromosomal repl 99.3 7.2E-12 1.6E-16 133.6 12.0 177 141-348 133-324 (450)
85 PRK12422 chromosomal replicati 99.3 3.6E-11 7.9E-16 128.0 17.2 164 157-350 141-317 (445)
86 PRK07764 DNA polymerase III su 99.3 2.7E-11 5.9E-16 137.0 17.0 147 155-335 35-210 (824)
87 PF07724 AAA_2: AAA domain (Cd 99.3 7E-13 1.5E-17 123.8 3.5 127 156-288 2-132 (171)
88 TIGR00362 DnaA chromosomal rep 99.3 1E-11 2.2E-16 130.6 12.4 176 141-347 121-311 (405)
89 PRK14958 DNA polymerase III su 99.3 2.1E-11 4.6E-16 131.7 14.8 169 122-335 14-209 (509)
90 PRK14964 DNA polymerase III su 99.3 3.7E-11 8E-16 128.7 15.9 171 122-337 11-208 (491)
91 KOG0989 Replication factor C, 99.3 5.2E-12 1.1E-16 125.6 8.4 164 140-341 43-224 (346)
92 PRK08691 DNA polymerase III su 99.3 3.8E-11 8.2E-16 132.2 15.9 168 123-335 15-209 (709)
93 PRK05563 DNA polymerase III su 99.3 5.3E-11 1.1E-15 130.1 16.9 169 122-335 14-209 (559)
94 KOG0745 Putative ATP-dependent 99.3 1.4E-11 2.9E-16 127.2 11.2 143 158-304 227-381 (564)
95 PRK06645 DNA polymerase III su 99.3 5E-11 1.1E-15 128.4 16.0 148 155-336 41-219 (507)
96 PRK14951 DNA polymerase III su 99.3 8.6E-11 1.9E-15 129.0 18.1 169 122-335 14-214 (618)
97 PRK14952 DNA polymerase III su 99.3 8.9E-11 1.9E-15 128.4 17.9 158 122-324 11-195 (584)
98 TIGR01650 PD_CobS cobaltochela 99.3 2.2E-11 4.8E-16 123.9 12.2 143 157-319 64-233 (327)
99 PTZ00112 origin recognition co 99.3 1E-10 2.2E-15 130.1 17.9 153 157-334 781-966 (1164)
100 TIGR03345 VI_ClpV1 type VI sec 99.3 8.7E-11 1.9E-15 133.9 17.6 162 134-319 572-780 (852)
101 PRK14963 DNA polymerase III su 99.3 1.2E-10 2.5E-15 125.8 17.5 145 155-333 34-204 (504)
102 PRK06893 DNA replication initi 99.3 2.3E-11 4.9E-16 118.5 11.0 149 158-342 40-199 (229)
103 PRK14957 DNA polymerase III su 99.3 1.4E-10 3.1E-15 125.8 18.2 147 155-335 36-209 (546)
104 PRK12402 replication factor C 99.3 4E-11 8.6E-16 122.0 13.1 151 159-337 38-217 (337)
105 PRK14086 dnaA chromosomal repl 99.3 3.4E-11 7.4E-16 131.2 13.2 160 159-348 316-490 (617)
106 cd00009 AAA The AAA+ (ATPases 99.3 3.7E-11 7.9E-16 104.7 10.8 128 156-306 18-150 (151)
107 CHL00095 clpC Clp protease ATP 99.3 1.1E-10 2.3E-15 133.2 17.3 165 133-320 514-733 (821)
108 TIGR02397 dnaX_nterm DNA polym 99.3 9.5E-11 2.1E-15 120.3 15.3 149 155-337 34-209 (355)
109 PRK00411 cdc6 cell division co 99.3 7.8E-11 1.7E-15 122.8 14.8 155 155-332 53-237 (394)
110 PRK13341 recombination factor 99.3 5.6E-11 1.2E-15 133.0 14.3 146 157-339 52-210 (725)
111 PRK14969 DNA polymerase III su 99.2 7.7E-11 1.7E-15 128.0 14.9 147 155-335 36-209 (527)
112 COG1219 ClpX ATP-dependent pro 99.2 2.2E-11 4.8E-16 121.7 9.5 143 158-304 98-252 (408)
113 PRK14088 dnaA chromosomal repl 99.2 4.7E-11 1E-15 127.1 12.4 174 143-348 118-307 (440)
114 COG0542 clpA ATP-binding subun 99.2 1E-10 2.3E-15 129.8 15.4 162 136-320 499-706 (786)
115 TIGR00678 holB DNA polymerase 99.2 6.7E-11 1.5E-15 111.2 12.0 145 155-336 12-181 (188)
116 PF07728 AAA_5: AAA domain (dy 99.2 2E-11 4.4E-16 108.9 7.8 120 159-299 1-139 (139)
117 PRK14959 DNA polymerase III su 99.2 1.2E-10 2.5E-15 127.5 15.2 167 123-334 15-208 (624)
118 PRK14965 DNA polymerase III su 99.2 8.2E-11 1.8E-15 129.1 13.8 169 122-335 14-209 (576)
119 PRK06305 DNA polymerase III su 99.2 5.2E-10 1.1E-14 119.4 19.5 147 155-335 37-211 (451)
120 PRK14970 DNA polymerase III su 99.2 1.9E-10 4.2E-15 119.3 15.0 158 155-342 37-204 (367)
121 KOG2028 ATPase related to the 99.2 6.7E-11 1.4E-15 120.0 10.3 123 158-317 163-292 (554)
122 PRK05896 DNA polymerase III su 99.2 2.3E-10 4.9E-15 124.8 15.0 147 155-335 36-209 (605)
123 PRK07133 DNA polymerase III su 99.2 5.5E-10 1.2E-14 124.0 17.0 153 155-335 38-208 (725)
124 TIGR03346 chaperone_ClpB ATP-d 99.2 9.6E-10 2.1E-14 125.8 19.2 183 133-335 570-803 (852)
125 PRK14953 DNA polymerase III su 99.2 4.1E-10 8.9E-15 121.1 15.3 147 155-335 36-209 (486)
126 TIGR02902 spore_lonB ATP-depen 99.2 2.5E-10 5.3E-15 124.2 13.7 163 155-333 84-292 (531)
127 smart00382 AAA ATPases associa 99.2 4.2E-10 9E-15 96.8 12.4 125 157-305 2-144 (148)
128 PRK14948 DNA polymerase III su 99.2 1.1E-09 2.4E-14 120.9 18.5 154 155-336 36-212 (620)
129 PRK11331 5-methylcytosine-spec 99.1 2.2E-10 4.7E-15 120.9 11.7 135 157-308 194-359 (459)
130 KOG0741 AAA+-type ATPase [Post 99.1 3.6E-10 7.9E-15 119.1 12.7 137 152-310 533-674 (744)
131 PRK06647 DNA polymerase III su 99.1 1.2E-09 2.6E-14 119.4 17.3 147 155-335 36-209 (563)
132 PRK08084 DNA replication initi 99.1 3.6E-10 7.7E-15 110.6 11.9 147 158-342 46-205 (235)
133 PRK10865 protein disaggregatio 99.1 1.8E-09 3.8E-14 123.6 19.2 164 134-320 574-780 (857)
134 PRK00440 rfc replication facto 99.1 1.1E-09 2.3E-14 110.5 15.2 144 159-336 40-193 (319)
135 PRK09111 DNA polymerase III su 99.1 1.1E-09 2.3E-14 120.4 16.4 152 155-334 44-221 (598)
136 KOG1969 DNA replication checkp 99.1 9.1E-10 2E-14 119.8 15.1 155 158-335 327-499 (877)
137 PRK05642 DNA replication initi 99.1 1.8E-09 3.9E-14 105.6 14.4 161 140-339 28-201 (234)
138 PRK14955 DNA polymerase III su 99.1 1E-09 2.2E-14 115.4 13.6 153 155-335 36-217 (397)
139 PRK08451 DNA polymerase III su 99.1 2.7E-09 5.8E-14 115.5 17.0 147 155-335 34-207 (535)
140 PRK06620 hypothetical protein; 99.1 1.7E-09 3.7E-14 104.5 13.7 133 158-342 45-185 (214)
141 PRK14954 DNA polymerase III su 99.1 2.5E-09 5.5E-14 117.8 16.3 174 123-335 15-217 (620)
142 COG0714 MoxR-like ATPases [Gen 99.1 7.1E-10 1.5E-14 113.6 11.1 145 159-320 45-204 (329)
143 PRK14087 dnaA chromosomal repl 99.1 1.3E-09 2.7E-14 116.5 12.9 178 141-347 126-320 (450)
144 PRK14950 DNA polymerase III su 99.0 2.2E-09 4.8E-14 118.1 14.9 148 155-336 36-211 (585)
145 TIGR03420 DnaA_homol_Hda DnaA 99.0 2.9E-09 6.2E-14 102.3 13.6 148 155-341 36-196 (226)
146 PHA02244 ATPase-like protein 99.0 1.2E-09 2.6E-14 112.8 10.5 135 158-315 120-269 (383)
147 COG0542 clpA ATP-binding subun 99.0 2.6E-09 5.6E-14 118.9 13.8 136 160-320 194-347 (786)
148 PRK08727 hypothetical protein; 99.0 5.6E-09 1.2E-13 102.0 14.2 143 158-339 42-197 (233)
149 COG0470 HolB ATPase involved i 99.0 1.4E-09 3.1E-14 109.6 10.3 122 155-306 22-167 (325)
150 PF00308 Bac_DnaA: Bacterial d 99.0 1.6E-09 3.4E-14 105.1 8.9 177 139-346 17-208 (219)
151 PRK08903 DnaA regulatory inact 99.0 9.7E-09 2.1E-13 99.3 14.3 144 155-342 40-195 (227)
152 PRK05707 DNA polymerase III su 99.0 4.8E-09 1E-13 107.7 12.7 135 154-319 19-178 (328)
153 COG1474 CDC6 Cdc6-related prot 99.0 7.9E-09 1.7E-13 107.5 14.0 139 155-319 40-203 (366)
154 TIGR02903 spore_lon_C ATP-depe 99.0 6.3E-09 1.4E-13 115.1 14.0 163 156-337 174-385 (615)
155 PRK14971 DNA polymerase III su 99.0 9.3E-09 2E-13 113.6 15.1 147 155-335 37-211 (614)
156 PRK07471 DNA polymerase III su 98.9 4.5E-08 9.8E-13 101.9 19.1 138 154-319 38-213 (365)
157 PRK09112 DNA polymerase III su 98.9 6.5E-08 1.4E-12 100.2 18.7 153 154-334 42-228 (351)
158 COG2812 DnaX DNA polymerase II 98.9 5E-09 1.1E-13 112.5 10.2 178 122-338 14-212 (515)
159 PF05673 DUF815: Protein of un 98.9 3.2E-08 6.9E-13 96.9 14.3 158 142-332 37-222 (249)
160 PF07726 AAA_3: ATPase family 98.9 2.1E-09 4.5E-14 95.4 4.8 118 159-299 1-129 (131)
161 COG1220 HslU ATP-dependent pro 98.8 1E-07 2.2E-12 96.4 16.3 91 220-316 250-346 (444)
162 PRK05564 DNA polymerase III su 98.8 4.5E-08 9.7E-13 99.6 13.9 148 154-335 23-179 (313)
163 PRK08116 hypothetical protein; 98.8 2.6E-08 5.6E-13 99.5 10.8 100 156-286 113-221 (268)
164 PRK04132 replication factor C 98.8 3.2E-08 6.8E-13 112.0 12.5 144 160-337 567-722 (846)
165 PRK09087 hypothetical protein; 98.8 3.8E-08 8.3E-13 95.9 11.5 134 158-339 45-188 (226)
166 PRK12377 putative replication 98.8 3.4E-08 7.4E-13 97.6 11.2 99 157-286 101-206 (248)
167 PRK06835 DNA replication prote 98.8 2.4E-08 5.2E-13 102.5 8.9 114 141-286 168-289 (329)
168 PRK13407 bchI magnesium chelat 98.8 1E-08 2.3E-13 105.3 6.3 83 221-319 129-216 (334)
169 PRK08058 DNA polymerase III su 98.7 8.2E-08 1.8E-12 98.6 12.5 138 154-328 25-187 (329)
170 PRK06964 DNA polymerase III su 98.7 6.7E-08 1.5E-12 99.6 11.8 136 155-318 19-203 (342)
171 PRK07399 DNA polymerase III su 98.7 2.4E-07 5.2E-12 94.6 15.6 152 155-335 24-213 (314)
172 PRK08181 transposase; Validate 98.7 2.2E-08 4.8E-13 100.0 7.4 101 156-286 105-209 (269)
173 PRK06526 transposase; Provisio 98.7 1.6E-08 3.5E-13 100.2 5.8 73 155-233 96-172 (254)
174 PRK07952 DNA replication prote 98.7 9.2E-08 2E-12 94.3 10.9 99 157-286 99-205 (244)
175 PRK08769 DNA polymerase III su 98.7 1.5E-07 3.3E-12 96.2 12.0 143 154-328 23-190 (319)
176 smart00350 MCM minichromosome 98.7 3.1E-08 6.7E-13 107.5 6.7 142 157-320 236-401 (509)
177 TIGR02031 BchD-ChlD magnesium 98.7 3.3E-08 7.1E-13 109.0 6.9 144 158-319 17-174 (589)
178 PRK06871 DNA polymerase III su 98.7 2.2E-07 4.8E-12 95.2 12.4 137 154-318 21-178 (325)
179 PRK06921 hypothetical protein; 98.6 1.4E-07 3.1E-12 94.1 9.8 68 156-231 116-188 (266)
180 COG0593 DnaA ATPase involved i 98.6 6E-07 1.3E-11 94.1 14.9 176 140-348 97-288 (408)
181 TIGR02442 Cob-chelat-sub cobal 98.6 6.3E-08 1.4E-12 107.6 8.1 144 158-319 26-214 (633)
182 TIGR00602 rad24 checkpoint pro 98.6 4.9E-07 1.1E-11 100.0 14.4 81 155-235 108-210 (637)
183 PF01695 IstB_IS21: IstB-like 98.6 3.3E-08 7.1E-13 92.9 4.5 67 155-231 45-119 (178)
184 PRK08939 primosomal protein Dn 98.6 3.1E-07 6.7E-12 93.5 11.6 69 156-232 155-229 (306)
185 PF13177 DNA_pol3_delta2: DNA 98.6 2.8E-07 6.1E-12 85.2 10.3 119 154-303 16-157 (162)
186 PRK13531 regulatory ATPase Rav 98.6 1.9E-07 4E-12 99.8 9.7 135 158-317 40-192 (498)
187 PRK07993 DNA polymerase III su 98.6 1.4E-07 3.1E-12 97.1 8.5 144 154-328 21-186 (334)
188 PF00158 Sigma54_activat: Sigm 98.6 1.2E-07 2.7E-12 88.3 7.1 122 155-300 20-155 (168)
189 PRK08699 DNA polymerase III su 98.6 2.9E-07 6.3E-12 94.4 10.2 134 155-317 19-183 (325)
190 COG1484 DnaC DNA replication p 98.5 3.8E-07 8.3E-12 90.5 10.2 69 156-232 104-179 (254)
191 PRK09183 transposase/IS protei 98.5 9.9E-08 2.2E-12 94.9 5.6 74 154-232 99-176 (259)
192 TIGR03015 pepcterm_ATPase puta 98.5 5E-06 1.1E-10 82.0 17.6 155 157-336 43-228 (269)
193 CHL00081 chlI Mg-protoporyphyr 98.5 3.2E-07 6.9E-12 94.8 9.3 85 219-319 143-232 (350)
194 PRK06090 DNA polymerase III su 98.5 1.1E-06 2.4E-11 89.9 13.2 133 154-317 22-178 (319)
195 TIGR02030 BchI-ChlI magnesium 98.5 1.8E-07 3.8E-12 96.4 6.8 85 219-319 130-219 (337)
196 PF05621 TniB: Bacterial TniB 98.4 4.1E-06 8.8E-11 84.5 13.7 203 144-375 48-284 (302)
197 TIGR02974 phageshock_pspF psp 98.4 6.9E-07 1.5E-11 91.9 8.4 134 156-312 21-176 (329)
198 COG2607 Predicted ATPase (AAA+ 98.4 4.5E-06 9.7E-11 81.3 13.3 150 143-326 71-246 (287)
199 PF13401 AAA_22: AAA domain; P 98.4 1.3E-06 2.9E-11 76.3 8.9 75 156-233 3-100 (131)
200 KOG1051 Chaperone HSP104 and r 98.4 3.1E-06 6.6E-11 95.9 12.9 112 155-287 589-712 (898)
201 PF06309 Torsin: Torsin; Inte 98.3 5.5E-06 1.2E-10 73.5 10.7 88 138-225 34-126 (127)
202 PF13173 AAA_14: AAA domain 98.3 2.5E-06 5.4E-11 75.4 8.5 69 158-232 3-73 (128)
203 KOG2170 ATPase of the AAA+ sup 98.3 1.9E-06 4E-11 86.3 8.4 108 123-234 80-192 (344)
204 PRK11608 pspF phage shock prot 98.3 2.1E-06 4.5E-11 88.2 9.1 133 156-312 28-183 (326)
205 TIGR00368 Mg chelatase-related 98.3 1E-06 2.2E-11 95.3 6.7 129 156-307 210-390 (499)
206 PF03969 AFG1_ATPase: AFG1-lik 98.3 4.5E-06 9.7E-11 86.9 11.2 32 152-183 57-88 (362)
207 KOG2035 Replication factor C, 98.3 2.3E-05 5.1E-10 77.8 15.0 178 130-335 6-217 (351)
208 PLN03210 Resistant to P. syrin 98.3 2.1E-05 4.6E-10 93.3 17.5 135 154-322 204-367 (1153)
209 cd01120 RecA-like_NTPases RecA 98.2 5.5E-06 1.2E-10 74.1 9.3 74 160-235 2-100 (165)
210 PF03215 Rad17: Rad17 cell cyc 98.2 1.5E-05 3.3E-10 86.6 13.6 36 154-189 42-77 (519)
211 PF12775 AAA_7: P-loop contain 98.2 1.5E-06 3.3E-11 87.0 5.3 142 158-320 34-194 (272)
212 PF05729 NACHT: NACHT domain 98.2 1.7E-05 3.6E-10 71.5 11.7 145 158-321 1-165 (166)
213 PRK11388 DNA-binding transcrip 98.2 2.9E-06 6.2E-11 94.6 8.0 154 157-334 348-533 (638)
214 KOG0991 Replication factor C, 98.2 1.5E-06 3.2E-11 84.3 4.6 110 158-301 49-166 (333)
215 PTZ00111 DNA replication licen 98.2 3E-06 6.5E-11 96.1 7.8 144 156-319 491-657 (915)
216 PF06068 TIP49: TIP49 C-termin 98.2 1.8E-06 3.8E-11 89.1 4.9 56 157-213 50-107 (398)
217 TIGR01817 nifA Nif-specific re 98.2 3.4E-06 7.4E-11 92.1 7.5 160 156-340 218-414 (534)
218 PHA00729 NTP-binding motif con 98.2 4.1E-06 8.9E-11 81.5 7.2 28 157-184 17-44 (226)
219 PRK05022 anaerobic nitric oxid 98.2 8.1E-06 1.7E-10 88.7 10.2 162 155-340 208-406 (509)
220 PF00910 RNA_helicase: RNA hel 98.2 7E-06 1.5E-10 70.6 7.8 24 160-183 1-24 (107)
221 COG1224 TIP49 DNA helicase TIP 98.1 5.3E-06 1.1E-10 84.8 7.7 58 155-213 63-122 (450)
222 COG3829 RocR Transcriptional r 98.1 9.9E-06 2.1E-10 86.8 10.0 126 154-301 265-403 (560)
223 COG1239 ChlI Mg-chelatase subu 98.1 2.7E-05 5.8E-10 81.4 12.8 149 157-321 38-234 (423)
224 PRK15429 formate hydrogenlyase 98.1 1.8E-05 3.9E-10 89.1 12.1 159 156-339 398-594 (686)
225 KOG0990 Replication factor C, 98.1 4.6E-06 9.9E-11 84.1 5.6 133 159-322 64-206 (360)
226 PRK15424 propionate catabolism 98.1 9.7E-06 2.1E-10 88.4 8.4 136 155-312 240-405 (538)
227 PRK10820 DNA-binding transcrip 98.1 1.7E-05 3.6E-10 86.5 10.0 157 159-339 229-422 (520)
228 TIGR02329 propionate_PrpR prop 98.0 1.3E-05 2.9E-10 87.2 8.9 110 155-286 233-358 (526)
229 PRK09862 putative ATP-dependen 98.0 6.5E-06 1.4E-10 89.0 6.3 127 156-305 209-385 (506)
230 PRK05917 DNA polymerase III su 98.0 1.8E-05 4E-10 79.8 9.0 123 154-304 16-151 (290)
231 PF01078 Mg_chelatase: Magnesi 98.0 4E-07 8.7E-12 87.3 -2.8 25 157-181 22-46 (206)
232 PF12774 AAA_6: Hydrolytic ATP 98.0 3.6E-05 7.8E-10 75.4 10.8 140 157-315 32-176 (231)
233 KOG1514 Origin recognition com 98.0 4.8E-05 1E-09 83.5 12.0 138 158-321 423-591 (767)
234 COG1221 PspF Transcriptional r 98.0 3.5E-06 7.5E-11 88.3 3.2 132 157-312 101-253 (403)
235 TIGR02237 recomb_radB DNA repa 98.0 5.2E-05 1.1E-09 72.2 10.7 82 153-234 8-111 (209)
236 TIGR02915 PEP_resp_reg putativ 97.9 5.4E-05 1.2E-09 80.4 11.2 159 157-339 162-357 (445)
237 PF00931 NB-ARC: NB-ARC domain 97.9 0.00013 2.9E-09 72.3 13.1 152 155-342 17-198 (287)
238 PRK07132 DNA polymerase III su 97.9 0.00012 2.7E-09 74.3 12.8 130 155-317 16-160 (299)
239 COG1618 Predicted nucleotide k 97.9 0.00012 2.5E-09 67.7 11.1 28 154-181 2-29 (179)
240 PRK15115 response regulator Gl 97.9 2.3E-05 5E-10 83.1 7.6 154 157-335 157-347 (444)
241 PRK10923 glnG nitrogen regulat 97.9 7.3E-05 1.6E-09 80.0 11.5 161 156-339 160-356 (469)
242 PF14532 Sigma54_activ_2: Sigm 97.9 2.8E-05 6.1E-10 69.6 6.7 60 157-234 21-83 (138)
243 KOG1968 Replication factor C, 97.9 3E-05 6.6E-10 88.4 8.3 156 159-342 359-526 (871)
244 KOG1970 Checkpoint RAD17-RFC c 97.9 0.00011 2.4E-09 78.9 11.7 35 156-190 109-143 (634)
245 cd01124 KaiC KaiC is a circadi 97.9 0.00012 2.5E-09 68.0 10.7 32 159-190 1-35 (187)
246 PF01637 Arch_ATPase: Archaeal 97.9 6.5E-05 1.4E-09 71.3 9.1 26 156-181 19-44 (234)
247 PF00493 MCM: MCM2/3/5 family 97.9 1.3E-05 2.9E-10 82.5 4.6 138 155-321 55-223 (331)
248 PRK11823 DNA repair protein Ra 97.8 5E-05 1.1E-09 81.3 8.9 79 153-235 76-171 (446)
249 PF13207 AAA_17: AAA domain; P 97.8 1.7E-05 3.6E-10 68.6 4.2 32 159-190 1-32 (121)
250 KOG2227 Pre-initiation complex 97.8 0.0004 8.6E-09 73.5 14.7 155 141-322 158-341 (529)
251 smart00763 AAA_PrkA PrkA AAA d 97.8 7E-05 1.5E-09 77.6 8.9 57 155-211 76-143 (361)
252 COG1485 Predicted ATPase [Gene 97.8 0.00011 2.3E-09 75.4 9.7 107 154-291 62-177 (367)
253 PRK09376 rho transcription ter 97.8 4.9E-05 1.1E-09 79.5 7.4 76 159-234 171-270 (416)
254 PRK05818 DNA polymerase III su 97.8 0.00014 3E-09 72.3 9.9 122 155-304 5-144 (261)
255 PRK07276 DNA polymerase III su 97.8 0.00026 5.5E-09 71.7 12.0 133 154-316 21-172 (290)
256 PRK11361 acetoacetate metaboli 97.8 9.6E-05 2.1E-09 78.6 9.2 132 157-312 166-320 (457)
257 PRK00131 aroK shikimate kinase 97.7 3.1E-05 6.8E-10 70.8 4.7 35 155-189 2-36 (175)
258 PF13671 AAA_33: AAA domain; P 97.7 4.1E-05 8.8E-10 68.0 5.2 33 160-194 2-34 (143)
259 PRK08118 topology modulation p 97.7 9.7E-05 2.1E-09 68.6 7.8 52 159-210 3-54 (167)
260 cd01121 Sms Sms (bacterial rad 97.7 0.00024 5.1E-09 74.4 11.5 79 153-235 78-173 (372)
261 PRK06067 flagellar accessory p 97.7 0.00012 2.7E-09 71.1 8.6 81 153-233 21-133 (234)
262 TIGR01618 phage_P_loop phage n 97.7 5.1E-05 1.1E-09 73.8 5.8 76 155-234 10-95 (220)
263 PRK09361 radB DNA repair and r 97.7 8.2E-05 1.8E-09 71.8 7.1 82 153-235 19-122 (225)
264 COG2204 AtoC Response regulato 97.7 7.1E-05 1.5E-09 79.9 6.9 122 155-301 162-298 (464)
265 PRK07261 topology modulation p 97.7 0.00011 2.5E-09 68.3 7.4 42 159-200 2-43 (171)
266 PF13191 AAA_16: AAA ATPase do 97.6 0.00013 2.9E-09 67.1 7.3 38 153-190 20-60 (185)
267 cd01128 rho_factor Transcripti 97.6 0.00015 3.2E-09 71.9 7.8 79 156-234 15-117 (249)
268 PHA02624 large T antigen; Prov 97.6 0.00043 9.4E-09 75.8 12.0 138 153-313 427-568 (647)
269 PHA02774 E1; Provisional 97.6 0.00042 9.1E-09 75.6 11.8 110 143-286 422-533 (613)
270 PF05707 Zot: Zonular occluden 97.6 8E-05 1.7E-09 70.7 5.5 121 159-304 2-142 (193)
271 PF03266 NTPase_1: NTPase; In 97.6 2.8E-05 6.1E-10 72.5 2.1 23 159-181 1-23 (168)
272 PRK13947 shikimate kinase; Pro 97.6 0.0002 4.4E-09 65.8 7.7 41 159-201 3-43 (171)
273 PRK13695 putative NTPase; Prov 97.6 0.0003 6.4E-09 65.3 8.6 23 159-181 2-24 (174)
274 PRK06762 hypothetical protein; 97.6 0.00013 2.7E-09 67.0 5.9 38 157-194 2-39 (166)
275 TIGR02012 tigrfam_recA protein 97.6 0.00044 9.5E-09 71.0 10.2 83 153-235 51-148 (321)
276 cd01394 radB RadB. The archaea 97.6 0.00059 1.3E-08 65.5 10.6 39 153-191 15-56 (218)
277 TIGR01818 ntrC nitrogen regula 97.5 4.1E-05 8.8E-10 81.7 2.7 155 156-334 156-346 (463)
278 cd00227 CPT Chloramphenicol (C 97.5 0.00021 4.6E-09 66.4 6.8 34 158-191 3-36 (175)
279 cd00983 recA RecA is a bacter 97.5 0.00056 1.2E-08 70.2 10.4 83 153-235 51-148 (325)
280 KOG1942 DNA helicase, TBP-inte 97.5 0.00011 2.5E-09 73.5 4.8 56 157-213 64-121 (456)
281 cd01123 Rad51_DMC1_radA Rad51_ 97.5 0.00048 1E-08 66.6 9.1 82 153-234 15-129 (235)
282 PRK10365 transcriptional regul 97.5 0.00051 1.1E-08 72.7 10.0 132 156-312 161-316 (441)
283 PF06745 KaiC: KaiC; InterPro 97.5 0.00025 5.4E-09 68.5 6.9 80 153-232 15-127 (226)
284 TIGR03877 thermo_KaiC_1 KaiC d 97.5 0.001 2.2E-08 65.1 11.2 81 153-233 17-139 (237)
285 cd00984 DnaB_C DnaB helicase C 97.5 0.00089 1.9E-08 65.0 10.7 38 153-190 9-50 (242)
286 PRK03839 putative kinase; Prov 97.5 0.00012 2.6E-09 68.2 4.2 31 159-189 2-32 (180)
287 PRK04296 thymidine kinase; Pro 97.4 0.001 2.2E-08 63.0 10.4 71 158-231 3-89 (190)
288 PRK00625 shikimate kinase; Pro 97.4 0.00014 3.1E-09 68.1 4.3 31 159-189 2-32 (173)
289 cd00561 CobA_CobO_BtuR ATP:cor 97.4 0.00097 2.1E-08 61.7 9.8 116 159-302 4-149 (159)
290 PLN02200 adenylate kinase fami 97.4 0.00016 3.5E-09 70.9 4.9 40 153-194 39-78 (234)
291 cd02021 GntK Gluconate kinase 97.4 0.00056 1.2E-08 61.5 8.0 28 160-187 2-29 (150)
292 COG3604 FhlA Transcriptional r 97.4 0.00012 2.6E-09 77.9 3.9 166 155-342 244-444 (550)
293 cd00464 SK Shikimate kinase (S 97.4 0.00016 3.5E-09 64.9 4.2 30 160-189 2-31 (154)
294 cd01131 PilT Pilus retraction 97.4 0.00036 7.8E-09 66.5 6.7 67 159-229 3-83 (198)
295 TIGR00416 sms DNA repair prote 97.4 0.0016 3.4E-08 70.1 12.2 82 153-234 90-184 (454)
296 PRK08533 flagellar accessory p 97.4 0.00087 1.9E-08 65.5 9.4 38 153-190 20-60 (230)
297 TIGR01313 therm_gnt_kin carboh 97.4 0.00053 1.2E-08 62.6 7.1 28 160-187 1-28 (163)
298 TIGR01359 UMP_CMP_kin_fam UMP- 97.3 0.00018 3.8E-09 66.9 4.0 33 160-194 2-34 (183)
299 PRK14531 adenylate kinase; Pro 97.3 0.00022 4.8E-09 66.9 4.6 30 158-187 3-32 (183)
300 PRK08233 hypothetical protein; 97.3 0.00082 1.8E-08 62.0 8.4 32 157-188 3-35 (182)
301 KOG0478 DNA replication licens 97.3 0.00024 5.1E-09 77.9 5.3 135 156-309 461-616 (804)
302 KOG3347 Predicted nucleotide k 97.3 0.00016 3.5E-09 65.9 3.3 32 158-189 8-39 (176)
303 PRK14532 adenylate kinase; Pro 97.3 0.0002 4.3E-09 67.1 4.1 34 159-194 2-35 (188)
304 PRK13948 shikimate kinase; Pro 97.3 0.00044 9.5E-09 65.4 6.3 35 155-189 8-42 (182)
305 cd03283 ABC_MutS-like MutS-lik 97.3 0.0015 3.2E-08 62.5 10.0 23 158-180 26-48 (199)
306 PRK06696 uridine kinase; Valid 97.3 0.00053 1.2E-08 66.4 7.1 41 154-194 19-62 (223)
307 TIGR03878 thermo_KaiC_2 KaiC d 97.3 0.0021 4.5E-08 64.0 11.3 81 153-233 32-144 (259)
308 PRK09354 recA recombinase A; P 97.3 0.00077 1.7E-08 69.8 8.4 82 153-235 56-153 (349)
309 cd01393 recA_like RecA is a b 97.3 0.0017 3.6E-08 62.5 10.2 83 153-235 15-129 (226)
310 PRK05537 bifunctional sulfate 97.3 0.0012 2.5E-08 72.9 10.1 69 126-195 362-434 (568)
311 cd02027 APSK Adenosine 5'-phos 97.3 0.00072 1.6E-08 61.5 7.1 34 160-193 2-38 (149)
312 PTZ00088 adenylate kinase 1; P 97.3 0.0003 6.4E-09 68.9 4.8 38 155-194 4-41 (229)
313 COG1241 MCM2 Predicted ATPase 97.3 0.0002 4.3E-09 79.7 3.8 144 157-320 319-484 (682)
314 PHA02530 pseT polynucleotide k 97.3 0.00077 1.7E-08 67.8 7.8 36 157-193 2-37 (300)
315 PRK13946 shikimate kinase; Pro 97.3 0.00061 1.3E-08 64.0 6.5 35 156-190 9-43 (184)
316 cd02020 CMPK Cytidine monophos 97.2 0.00025 5.5E-09 62.9 3.7 30 160-189 2-31 (147)
317 PRK14527 adenylate kinase; Pro 97.2 0.0003 6.5E-09 66.3 4.2 32 155-186 4-35 (191)
318 PRK13949 shikimate kinase; Pro 97.2 0.00029 6.3E-09 65.6 4.0 31 159-189 3-33 (169)
319 PRK06547 hypothetical protein; 97.2 0.00035 7.5E-09 65.4 4.5 34 155-188 13-46 (172)
320 TIGR00767 rho transcription te 97.2 0.00079 1.7E-08 70.8 7.6 77 158-234 169-269 (415)
321 cd01428 ADK Adenylate kinase ( 97.2 0.00028 6.1E-09 65.9 3.9 33 160-194 2-34 (194)
322 cd03281 ABC_MSH5_euk MutS5 hom 97.2 0.0035 7.5E-08 60.6 11.5 23 157-179 29-51 (213)
323 cd03238 ABC_UvrA The excision 97.2 0.0033 7.1E-08 59.1 10.7 27 154-180 18-44 (176)
324 COG0563 Adk Adenylate kinase a 97.2 0.00035 7.7E-09 65.8 4.2 34 159-194 2-35 (178)
325 cd01122 GP4d_helicase GP4d_hel 97.2 0.0015 3.3E-08 64.6 8.8 38 153-190 26-67 (271)
326 TIGR02858 spore_III_AA stage I 97.2 0.00087 1.9E-08 67.2 6.9 26 157-182 111-136 (270)
327 PRK05800 cobU adenosylcobinami 97.2 0.0019 4E-08 60.4 8.6 34 159-192 3-36 (170)
328 TIGR00764 lon_rel lon-related 97.2 0.0002 4.4E-09 79.4 2.5 56 158-213 38-103 (608)
329 KOG1051 Chaperone HSP104 and r 97.1 0.0015 3.3E-08 74.5 9.4 137 158-319 209-363 (898)
330 PRK14530 adenylate kinase; Pro 97.1 0.00041 9E-09 66.7 4.3 30 159-188 5-34 (215)
331 PRK06217 hypothetical protein; 97.1 0.00046 1E-08 64.7 4.4 31 159-189 3-33 (183)
332 PRK04040 adenylate kinase; Pro 97.1 0.00045 9.8E-09 65.5 4.3 30 156-185 1-32 (188)
333 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00046 9.9E-09 64.1 4.1 29 158-186 4-32 (188)
334 COG0703 AroK Shikimate kinase 97.1 0.00043 9.4E-09 64.7 3.8 32 158-189 3-34 (172)
335 PRK13406 bchD magnesium chelat 97.1 0.00069 1.5E-08 74.9 5.9 129 158-305 26-166 (584)
336 PRK12608 transcription termina 97.1 0.0011 2.3E-08 69.3 6.9 76 159-234 135-234 (380)
337 PRK05986 cob(I)alamin adenolsy 97.1 0.0026 5.5E-08 60.6 8.9 117 158-302 23-169 (191)
338 PF06414 Zeta_toxin: Zeta toxi 97.1 0.0022 4.7E-08 61.0 8.2 44 154-197 12-56 (199)
339 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0039 8.5E-08 60.1 10.0 80 153-232 12-119 (224)
340 PRK03731 aroL shikimate kinase 97.0 0.00064 1.4E-08 62.6 4.4 31 159-189 4-34 (171)
341 PRK04328 hypothetical protein; 97.0 0.0022 4.9E-08 63.3 8.5 37 153-189 19-58 (249)
342 cd00544 CobU Adenosylcobinamid 97.0 0.0027 5.9E-08 59.3 8.5 73 160-235 2-88 (169)
343 TIGR02238 recomb_DMC1 meiotic 97.0 0.004 8.8E-08 63.8 10.5 83 153-235 92-206 (313)
344 TIGR03574 selen_PSTK L-seryl-t 97.0 0.0014 2.9E-08 64.5 6.8 34 160-193 2-38 (249)
345 PF13521 AAA_28: AAA domain; P 97.0 0.00067 1.4E-08 62.1 4.2 27 160-187 2-28 (163)
346 TIGR01420 pilT_fam pilus retra 97.0 0.0014 2.9E-08 68.0 7.0 69 158-230 123-205 (343)
347 PRK09519 recA DNA recombinatio 97.0 0.0021 4.4E-08 72.9 8.8 83 153-235 56-153 (790)
348 COG1102 Cmk Cytidylate kinase 97.0 0.0006 1.3E-08 63.0 3.7 28 159-186 2-29 (179)
349 COG1936 Predicted nucleotide k 97.0 0.00056 1.2E-08 63.8 3.5 30 159-189 2-31 (180)
350 PRK14528 adenylate kinase; Pro 97.0 0.00072 1.6E-08 63.8 4.4 30 158-187 2-31 (186)
351 PF05272 VirE: Virulence-assoc 97.0 0.0028 6.1E-08 60.7 8.4 30 151-180 46-75 (198)
352 cd03243 ABC_MutS_homologs The 97.0 0.0054 1.2E-07 58.4 10.3 23 157-179 29-51 (202)
353 PRK02496 adk adenylate kinase; 97.0 0.00075 1.6E-08 63.1 4.3 29 159-187 3-31 (184)
354 PLN03187 meiotic recombination 97.0 0.0063 1.4E-07 63.1 11.5 82 153-235 122-236 (344)
355 COG3854 SpoIIIAA ncharacterize 97.0 0.0016 3.5E-08 63.5 6.6 75 156-230 136-228 (308)
356 PRK08154 anaerobic benzoate ca 97.0 0.0011 2.4E-08 67.6 5.8 50 140-189 115-165 (309)
357 KOG2383 Predicted ATPase [Gene 97.0 0.004 8.6E-08 65.0 9.8 27 154-180 111-137 (467)
358 TIGR01351 adk adenylate kinase 97.0 0.00066 1.4E-08 65.1 3.9 28 160-187 2-29 (210)
359 PF01583 APS_kinase: Adenylyls 97.0 0.0032 6.9E-08 58.1 8.1 57 157-213 2-68 (156)
360 TIGR00708 cobA cob(I)alamin ad 97.0 0.0049 1.1E-07 57.8 9.5 117 159-303 7-152 (173)
361 TIGR02688 conserved hypothetic 97.0 0.006 1.3E-07 64.7 11.1 63 154-233 206-273 (449)
362 PRK00279 adk adenylate kinase; 97.0 0.00075 1.6E-08 64.9 4.1 34 159-194 2-35 (215)
363 PRK04301 radA DNA repair and r 96.9 0.0059 1.3E-07 62.4 10.7 82 153-234 98-212 (317)
364 TIGR02236 recomb_radA DNA repa 96.9 0.0034 7.4E-08 63.8 8.9 40 153-192 91-139 (310)
365 PRK05973 replicative DNA helic 96.9 0.012 2.6E-07 57.9 12.3 38 153-190 60-100 (237)
366 PRK05057 aroK shikimate kinase 96.9 0.00099 2.1E-08 62.1 4.4 34 157-190 4-37 (172)
367 PF14516 AAA_35: AAA-like doma 96.9 0.055 1.2E-06 55.8 17.6 166 156-340 30-233 (331)
368 KOG0482 DNA replication licens 96.9 0.0012 2.5E-08 70.5 5.3 145 155-318 373-538 (721)
369 TIGR03881 KaiC_arch_4 KaiC dom 96.9 0.012 2.5E-07 56.9 12.0 37 153-189 16-55 (229)
370 COG1373 Predicted ATPase (AAA+ 96.9 0.012 2.7E-07 62.2 13.1 71 155-232 36-106 (398)
371 PRK15455 PrkA family serine pr 96.9 0.0021 4.5E-08 70.4 7.2 59 130-190 78-137 (644)
372 COG5271 MDN1 AAA ATPase contai 96.9 0.0046 1E-07 73.5 10.2 146 155-320 1541-1704(4600)
373 PRK01184 hypothetical protein; 96.9 0.00096 2.1E-08 62.3 4.1 30 158-188 2-31 (184)
374 KOG2543 Origin recognition com 96.9 0.019 4.1E-07 59.8 13.7 95 139-233 12-128 (438)
375 PF04665 Pox_A32: Poxvirus A32 96.9 0.021 4.5E-07 56.4 13.4 138 154-319 10-170 (241)
376 PF13245 AAA_19: Part of AAA d 96.9 0.0017 3.6E-08 52.6 4.8 34 158-191 11-51 (76)
377 PLN02674 adenylate kinase 96.8 0.0011 2.4E-08 65.5 4.3 38 155-194 29-66 (244)
378 PF00448 SRP54: SRP54-type pro 96.8 0.003 6.5E-08 60.3 7.2 25 157-181 1-25 (196)
379 COG1066 Sms Predicted ATP-depe 96.8 0.0045 9.7E-08 64.9 8.9 102 153-258 89-207 (456)
380 KOG0480 DNA replication licens 96.8 0.0015 3.3E-08 71.3 5.7 144 155-320 376-543 (764)
381 PF00406 ADK: Adenylate kinase 96.8 0.00083 1.8E-08 60.8 3.1 31 162-194 1-31 (151)
382 cd00267 ABC_ATPase ABC (ATP-bi 96.8 0.0075 1.6E-07 54.8 9.4 28 155-182 23-50 (157)
383 PTZ00035 Rad51 protein; Provis 96.8 0.0083 1.8E-07 62.1 10.7 82 153-235 114-228 (337)
384 PRK14737 gmk guanylate kinase; 96.8 0.0026 5.5E-08 60.3 6.4 26 156-181 3-28 (186)
385 PF07693 KAP_NTPase: KAP famil 96.8 0.019 4E-07 58.2 13.1 33 152-184 15-47 (325)
386 PRK04182 cytidylate kinase; Pr 96.8 0.0012 2.7E-08 60.6 4.1 29 159-187 2-30 (180)
387 TIGR00455 apsK adenylylsulfate 96.8 0.0059 1.3E-07 57.0 8.7 41 154-194 15-58 (184)
388 cd03216 ABC_Carb_Monos_I This 96.8 0.0072 1.6E-07 55.6 9.1 28 154-181 23-50 (163)
389 COG4619 ABC-type uncharacteriz 96.8 0.0054 1.2E-07 57.4 8.0 25 156-180 28-52 (223)
390 PF13086 AAA_11: AAA domain; P 96.8 0.0016 3.5E-08 61.6 4.9 23 159-181 19-41 (236)
391 COG4088 Predicted nucleotide k 96.8 0.0016 3.4E-08 62.7 4.6 24 159-182 3-26 (261)
392 PF13238 AAA_18: AAA domain; P 96.8 0.0012 2.5E-08 57.0 3.5 22 160-181 1-22 (129)
393 COG5245 DYN1 Dynein, heavy cha 96.8 0.0032 6.9E-08 74.2 7.7 168 155-344 1492-1683(3164)
394 smart00534 MUTSac ATPase domai 96.8 0.0092 2E-07 56.1 9.8 20 160-179 2-21 (185)
395 PLN02459 probable adenylate ki 96.8 0.0018 3.8E-08 64.6 5.1 37 156-194 28-64 (261)
396 TIGR02525 plasmid_TraJ plasmid 96.8 0.0028 6.1E-08 66.4 6.8 68 159-230 151-235 (372)
397 cd03115 SRP The signal recogni 96.8 0.0058 1.2E-07 56.4 8.2 33 159-191 2-37 (173)
398 PF13479 AAA_24: AAA domain 96.7 0.0026 5.5E-08 61.3 5.8 72 156-232 2-80 (213)
399 PF08433 KTI12: Chromatin asso 96.7 0.004 8.7E-08 62.5 7.3 75 159-234 3-84 (270)
400 cd03222 ABC_RNaseL_inhibitor T 96.7 0.0064 1.4E-07 57.2 8.3 76 155-233 23-102 (177)
401 PRK14974 cell division protein 96.7 0.013 2.9E-07 60.6 11.2 36 155-190 138-176 (336)
402 PRK14722 flhF flagellar biosyn 96.7 0.0019 4E-08 67.7 5.0 26 155-180 135-160 (374)
403 PTZ00202 tuzin; Provisional 96.7 0.064 1.4E-06 57.4 16.2 45 146-190 275-319 (550)
404 PF09848 DUF2075: Uncharacteri 96.7 0.0029 6.3E-08 65.6 6.3 23 159-181 3-25 (352)
405 PRK09302 circadian clock prote 96.7 0.0083 1.8E-07 65.3 10.1 82 153-234 27-144 (509)
406 PRK12339 2-phosphoglycerate ki 96.7 0.0017 3.7E-08 62.1 4.2 30 156-185 2-31 (197)
407 cd03227 ABC_Class2 ABC-type Cl 96.7 0.011 2.4E-07 54.3 9.4 24 157-180 21-44 (162)
408 cd00046 DEXDc DEAD-like helica 96.7 0.0017 3.6E-08 55.5 3.7 24 159-182 2-25 (144)
409 COG3284 AcoR Transcriptional a 96.7 0.0016 3.4E-08 71.3 4.2 166 158-342 337-528 (606)
410 PRK03846 adenylylsulfate kinas 96.7 0.0066 1.4E-07 57.6 8.1 39 155-193 22-63 (198)
411 PRK14526 adenylate kinase; Pro 96.7 0.0017 3.7E-08 62.8 4.1 34 159-194 2-35 (211)
412 COG3283 TyrR Transcriptional r 96.7 0.0031 6.7E-08 65.0 6.0 103 160-286 230-344 (511)
413 TIGR01425 SRP54_euk signal rec 96.7 0.014 3E-07 62.3 11.2 37 155-191 98-137 (429)
414 TIGR02173 cyt_kin_arch cytidyl 96.7 0.0018 3.9E-08 59.1 4.0 29 159-187 2-30 (171)
415 cd03280 ABC_MutS2 MutS2 homolo 96.7 0.014 3E-07 55.5 10.2 22 158-179 29-50 (200)
416 PRK00771 signal recognition pa 96.6 0.014 3.1E-07 62.4 11.2 37 155-191 93-132 (437)
417 PRK00889 adenylylsulfate kinas 96.6 0.006 1.3E-07 56.4 7.3 37 156-192 3-42 (175)
418 TIGR02782 TrbB_P P-type conjug 96.6 0.0032 6.9E-08 64.1 5.8 70 157-230 132-214 (299)
419 PLN03186 DNA repair protein RA 96.6 0.009 2E-07 61.9 9.2 83 153-235 119-233 (342)
420 cd02019 NK Nucleoside/nucleoti 96.6 0.003 6.6E-08 49.8 4.4 31 160-190 2-33 (69)
421 TIGR00150 HI0065_YjeE ATPase, 96.6 0.0058 1.3E-07 54.9 6.7 30 155-184 20-49 (133)
422 cd01130 VirB11-like_ATPase Typ 96.6 0.0048 1E-07 58.1 6.4 71 156-230 24-110 (186)
423 PRK12338 hypothetical protein; 96.6 0.0021 4.6E-08 65.8 4.3 32 155-186 2-33 (319)
424 PRK13764 ATPase; Provisional 96.6 0.0033 7.1E-08 69.6 6.0 27 156-182 256-282 (602)
425 PRK05541 adenylylsulfate kinas 96.6 0.0023 5E-08 59.3 4.1 28 155-182 5-32 (176)
426 COG4650 RtcR Sigma54-dependent 96.6 0.0025 5.3E-08 64.2 4.4 73 158-234 209-296 (531)
427 PF13481 AAA_25: AAA domain; P 96.6 0.0049 1.1E-07 57.5 6.3 24 158-181 33-56 (193)
428 TIGR00064 ftsY signal recognit 96.6 0.0098 2.1E-07 59.7 8.8 37 155-191 70-109 (272)
429 cd03282 ABC_MSH4_euk MutS4 hom 96.5 0.018 3.8E-07 55.4 10.0 26 155-180 27-52 (204)
430 PRK13975 thymidylate kinase; P 96.5 0.0044 9.6E-08 58.1 5.8 28 158-185 3-30 (196)
431 PF01443 Viral_helicase1: Vira 96.5 0.001 2.2E-08 63.9 1.4 22 160-181 1-22 (234)
432 PRK05480 uridine/cytidine kina 96.5 0.0038 8.2E-08 59.6 5.2 37 155-191 4-41 (209)
433 TIGR02239 recomb_RAD51 DNA rep 96.5 0.011 2.4E-07 60.6 8.9 82 153-234 92-205 (316)
434 PRK13900 type IV secretion sys 96.5 0.0051 1.1E-07 63.5 6.4 71 156-230 159-245 (332)
435 PRK14529 adenylate kinase; Pro 96.5 0.0024 5.1E-08 62.4 3.8 36 159-196 2-37 (223)
436 PRK10867 signal recognition pa 96.5 0.022 4.8E-07 60.9 11.3 37 155-191 98-138 (433)
437 PF00437 T2SE: Type II/IV secr 96.5 0.0039 8.4E-08 61.9 5.2 71 156-230 126-207 (270)
438 TIGR01526 nadR_NMN_Atrans nico 96.5 0.0056 1.2E-07 63.0 6.5 36 157-192 162-197 (325)
439 PRK00300 gmk guanylate kinase; 96.5 0.014 3E-07 55.3 8.7 28 155-182 3-30 (205)
440 TIGR02788 VirB11 P-type DNA tr 96.4 0.0053 1.2E-07 62.6 6.1 72 155-230 142-228 (308)
441 PRK04841 transcriptional regul 96.4 0.08 1.7E-06 61.1 16.5 35 155-190 30-64 (903)
442 KOG0477 DNA replication licens 96.4 0.0015 3.2E-08 71.2 2.1 138 157-320 482-651 (854)
443 cd03284 ABC_MutS1 MutS1 homolo 96.4 0.017 3.6E-07 55.9 9.2 22 158-179 31-52 (216)
444 PRK05439 pantothenate kinase; 96.4 0.0054 1.2E-07 62.7 5.8 39 144-182 73-111 (311)
445 PRK08099 bifunctional DNA-bind 96.3 0.0067 1.4E-07 64.2 6.4 32 156-187 218-249 (399)
446 PRK13833 conjugal transfer pro 96.3 0.0055 1.2E-07 63.0 5.6 70 157-230 144-225 (323)
447 PRK04220 2-phosphoglycerate ki 96.3 0.0044 9.6E-08 63.0 4.8 32 154-185 89-120 (301)
448 TIGR00554 panK_bact pantothena 96.3 0.0062 1.3E-07 61.7 5.8 39 144-182 49-87 (290)
449 cd03247 ABCC_cytochrome_bd The 96.3 0.02 4.2E-07 53.3 8.7 28 154-181 25-52 (178)
450 TIGR02655 circ_KaiC circadian 96.3 0.016 3.4E-07 62.9 9.1 38 153-190 17-58 (484)
451 TIGR02655 circ_KaiC circadian 96.3 0.019 4.2E-07 62.2 9.8 82 153-234 259-367 (484)
452 PRK12723 flagellar biosynthesi 96.3 0.039 8.4E-07 58.2 11.7 27 155-181 172-198 (388)
453 cd00071 GMPK Guanosine monopho 96.3 0.018 3.9E-07 51.7 7.9 25 160-184 2-26 (137)
454 COG1116 TauB ABC-type nitrate/ 96.3 0.018 3.8E-07 56.9 8.4 23 158-180 30-52 (248)
455 PRK13894 conjugal transfer ATP 96.3 0.0065 1.4E-07 62.4 5.6 71 156-230 147-229 (319)
456 cd01125 repA Hexameric Replica 96.3 0.029 6.3E-07 54.7 10.0 21 160-180 4-24 (239)
457 COG0194 Gmk Guanylate kinase [ 96.2 0.015 3.3E-07 55.0 7.4 25 157-181 4-28 (191)
458 cd03221 ABCF_EF-3 ABCF_EF-3 E 96.2 0.011 2.5E-07 53.3 6.4 74 155-233 24-101 (144)
459 cd01129 PulE-GspE PulE/GspE Th 96.2 0.0091 2E-07 59.7 6.3 72 159-230 82-159 (264)
460 PF08423 Rad51: Rad51; InterP 96.2 0.0078 1.7E-07 59.9 5.8 83 153-235 34-148 (256)
461 cd03228 ABCC_MRP_Like The MRP 96.2 0.02 4.4E-07 52.9 8.2 28 154-181 25-52 (171)
462 cd03230 ABC_DR_subfamily_A Thi 96.2 0.017 3.8E-07 53.4 7.7 27 155-181 24-50 (173)
463 cd02022 DPCK Dephospho-coenzym 96.2 0.005 1.1E-07 57.6 3.9 32 160-194 2-33 (179)
464 PRK08356 hypothetical protein; 96.2 0.0056 1.2E-07 58.0 4.3 32 158-192 6-37 (195)
465 PRK13808 adenylate kinase; Pro 96.2 0.0046 9.9E-08 63.8 3.9 33 160-194 3-35 (333)
466 TIGR01663 PNK-3'Pase polynucle 96.2 0.011 2.4E-07 64.6 7.1 59 155-224 367-425 (526)
467 TIGR03499 FlhF flagellar biosy 96.2 0.016 3.5E-07 58.4 7.8 38 155-192 192-234 (282)
468 PRK09302 circadian clock prote 96.2 0.025 5.4E-07 61.6 9.8 82 153-234 269-377 (509)
469 PRK13851 type IV secretion sys 96.1 0.0081 1.7E-07 62.4 5.7 72 155-230 160-246 (344)
470 cd03287 ABC_MSH3_euk MutS3 hom 96.1 0.052 1.1E-06 52.9 11.0 25 155-179 29-53 (222)
471 PF00485 PRK: Phosphoribulokin 96.1 0.0051 1.1E-07 58.2 3.8 25 159-183 1-25 (194)
472 PF01745 IPT: Isopentenyl tran 96.1 0.0064 1.4E-07 58.8 4.4 40 158-197 2-41 (233)
473 cd03246 ABCC_Protease_Secretio 96.1 0.051 1.1E-06 50.3 10.3 27 155-181 26-52 (173)
474 smart00072 GuKc Guanylate kina 96.1 0.015 3.4E-07 54.4 6.8 25 157-181 2-26 (184)
475 PLN02199 shikimate kinase 96.1 0.0066 1.4E-07 61.6 4.5 33 157-189 102-134 (303)
476 PRK10416 signal recognition pa 96.1 0.024 5.2E-07 58.2 8.7 36 155-190 112-150 (318)
477 PRK14730 coaE dephospho-CoA ki 96.1 0.0064 1.4E-07 57.9 4.2 34 159-194 3-36 (195)
478 COG0606 Predicted ATPase with 96.1 0.003 6.6E-08 67.3 2.1 24 157-180 198-221 (490)
479 TIGR00959 ffh signal recogniti 96.1 0.05 1.1E-06 58.1 11.3 37 155-191 97-137 (428)
480 PRK10078 ribose 1,5-bisphospho 96.0 0.0054 1.2E-07 57.6 3.6 29 158-186 3-31 (186)
481 PRK14733 coaE dephospho-CoA ki 96.0 0.0067 1.5E-07 58.4 4.2 33 155-187 4-36 (204)
482 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.0 0.01 2.2E-07 56.3 5.4 23 159-181 40-62 (205)
483 KOG2680 DNA helicase TIP49, TB 96.0 0.0081 1.8E-07 60.7 4.7 57 156-213 65-123 (454)
484 COG0645 Predicted kinase [Gene 96.0 0.019 4E-07 53.6 6.7 71 158-235 2-87 (170)
485 TIGR00017 cmk cytidylate kinas 96.0 0.0077 1.7E-07 58.5 4.4 30 157-186 2-31 (217)
486 TIGR02322 phosphon_PhnN phosph 96.0 0.0064 1.4E-07 56.4 3.7 25 159-183 3-27 (179)
487 cd02024 NRK1 Nicotinamide ribo 96.0 0.0063 1.4E-07 57.8 3.6 27 160-186 2-29 (187)
488 TIGR03263 guanyl_kin guanylate 96.0 0.0053 1.2E-07 56.8 3.1 26 158-183 2-27 (180)
489 TIGR00235 udk uridine kinase. 96.0 0.0069 1.5E-07 57.9 3.9 27 156-182 5-31 (207)
490 PRK00023 cmk cytidylate kinase 95.9 0.0076 1.7E-07 58.7 4.1 31 157-187 4-34 (225)
491 cd02028 UMPK_like Uridine mono 95.9 0.0083 1.8E-07 56.3 4.2 35 160-194 2-39 (179)
492 TIGR01613 primase_Cterm phage/ 95.9 0.031 6.7E-07 56.8 8.6 68 154-232 73-140 (304)
493 COG2274 SunT ABC-type bacterio 95.9 0.012 2.7E-07 66.5 6.1 27 154-180 494-522 (709)
494 cd03213 ABCG_EPDR ABCG transpo 95.9 0.082 1.8E-06 50.0 10.9 28 154-181 32-59 (194)
495 PRK00091 miaA tRNA delta(2)-is 95.9 0.0091 2E-07 61.0 4.6 35 156-190 3-37 (307)
496 PF05970 PIF1: PIF1-like helic 95.8 0.0099 2.1E-07 62.0 4.7 40 155-194 20-62 (364)
497 TIGR00750 lao LAO/AO transport 95.8 0.038 8.3E-07 56.1 8.8 28 154-181 31-58 (300)
498 TIGR02524 dot_icm_DotB Dot/Icm 95.8 0.017 3.6E-07 60.4 6.2 24 158-181 135-158 (358)
499 PRK05506 bifunctional sulfate 95.8 0.028 6.1E-07 62.9 8.4 71 155-227 458-538 (632)
500 COG0529 CysC Adenylylsulfate k 95.8 0.032 7E-07 52.5 7.4 62 154-215 20-91 (197)
No 1
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=100.00 E-value=1.3e-90 Score=701.11 Aligned_cols=410 Identities=74% Similarity=1.136 Sum_probs=388.0
Q ss_pred ccccccccccccCCCCCCCCCCcccccccccccccccccccccccceeeecchhhhhhhhhhhccccccccccccccccc
Q 011983 9 GAVNNALPLKINGSSRFSLVPSSVFLGKSLKKVSSKVSQQRILSKSFKVVSEYDEEKQTSQDRWAGLAYDISDDQQDITR 88 (473)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 88 (473)
+++++ .++++++++++++.|.++|||.++++.................+++.++.+++++|||+++++|.+++|++|++
T Consensus 2 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~ 80 (413)
T PLN00020 2 GAVNR-ASLSLSAVASGASSPPSSAFLGSKVKVSSRRTSSARKSKSSVPVSEEDESKQSEQSSWRGLAQDISGDDYDITR 80 (413)
T ss_pred ccccc-cccccCCCccCCCCCCchhcccccccccccccccccccccccccccccccccccccchhccccccccchhhhhh
Confidence 56777 88999999999999999999999999855544455555566677899999999999999999999999999999
Q ss_pred ccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCC
Q 011983 89 GKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQ 168 (473)
Q Consensus 89 ~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGt 168 (473)
|+||||+||++++|+|++++|+++++|+ ...++|++++++||++|+|+|++.+|+.|||+.++++++|+++||||||||
T Consensus 81 g~g~vd~lf~~~~~~g~~~~i~~~~~~~-~~~~~f~~~~g~~~~~p~f~dk~~~hi~kn~l~~~~ik~PlgllL~GPPGc 159 (413)
T PLN00020 81 GKGMVDSLFQGPFGLGTDSDIASSYDYL-QRTRSFDNLVGGYYIAPAFMDKVAVHIAKNFLALPNIKVPLILGIWGGKGQ 159 (413)
T ss_pred cCCchhhhhcCCccCCcchhhhhhhHHH-hhhcchhhhcCccccCHHHHHHHHHHHHhhhhhccCCCCCeEEEeeCCCCC
Confidence 9999999999999999999999999988 677889999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHH-HcCCceEEEecCCCCccccCCCCCccchhhH
Q 011983 169 GKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ 247 (473)
Q Consensus 169 GKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~ 247 (473)
|||++|++||+++|++|+.+++++|.++|+|+++++||++|+.|.+++ ++.+||||||||||+++++++ .++.++++|
T Consensus 160 GKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~-~~~~tv~~q 238 (413)
T PLN00020 160 GKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFG-TTQYTVNNQ 238 (413)
T ss_pred CHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCC-CCCcchHHH
Confidence 999999999999999999999999999999999999999999999777 478999999999999999887 467889999
Q ss_pred HHHHHHHHhhcCCCcccCCCCc-ccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHHHHHHHHhhcCCCCCCH
Q 011983 248 MVNATLMNIADNPTNVQLPGMY-NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPK 326 (473)
Q Consensus 248 ~v~~~Ll~lld~~~~v~l~g~~-~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~Il~~~l~~~~v~~ 326 (473)
+++++||+++|+|++|+++|.| ..+...+|+||+|||+|+.|||+|+|+||||++||+|+.++|.+||+.++++++++.
T Consensus 239 iV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i~lPd~e~R~eIL~~~~r~~~l~~ 318 (413)
T PLN00020 239 MVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVVHGIFRDDGVSR 318 (413)
T ss_pred HHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCceeCCCCHHHHHHHHHHHhccCCCCH
Confidence 9999999999999999999998 556788999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHHHH
Q 011983 327 EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENV 406 (473)
Q Consensus 327 ~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~t~e~ll~~~~~~v~eqe~v 406 (473)
.++.++++.|+||+++||||+++++|++++++|+.++|.++++++++++++++|+|++|.+|++.|+++++++++||++|
T Consensus 319 ~dv~~Lv~~f~gq~~Df~GAlrar~yd~~v~~~i~~~g~~~~~~~l~~~~~~~p~f~~~~~t~~~l~~~g~~l~~eq~~v 398 (413)
T PLN00020 319 EDVVKLVDTFPGQPLDFFGALRARVYDDEVRKWIAEVGVENLGKKLVNSKKGPPTFEPPKMTLEKLLEYGNMLVREQENV 398 (413)
T ss_pred HHHHHHHHcCCCCCchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHhcCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhhhcc
Q 011983 407 KRVQLADKYLSEAAL 421 (473)
Q Consensus 407 ~~~~l~~~~~~~~~l 421 (473)
++++|+++||+++++
T Consensus 399 ~~~~l~~~y~~~~~~ 413 (413)
T PLN00020 399 KRVQLSDEYLKNAAL 413 (413)
T ss_pred HHHHHHHHHHHhccC
Confidence 999999999998653
No 2
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-58 Score=451.11 Aligned_cols=374 Identities=26% Similarity=0.349 Sum_probs=320.2
Q ss_pred CccceeecccccccccccccCCCCCC-CCC--Cccccccccccccccccccccccc-ceeeecchhhh----hhhhhhhc
Q 011983 1 MAAVVSTVGAVNNALPLKINGSSRFS-LVP--SSVFLGKSLKKVSSKVSQQRILSK-SFKVVSEYDEE----KQTSQDRW 72 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~~~ 72 (473)
|++..+++++.++ .||..|++++++ ..+ ++.++++..-|...-+.+-....+ ...|...++++ |+++..||
T Consensus 1 ~~~~~~~al~~~r-~~L~~~~~~~~~lka~~~~~r~l~k~~~ksend~kslqsvg~~~gevlk~l~~~~~iVK~s~Gpry 79 (388)
T KOG0651|consen 1 MMAERNKALAEYR-KPLLSHRSISSALKALRENSRFLGKKYDKSENDLKSLQSVGQIIGEVLKQLEDEKFIVKASSGPRY 79 (388)
T ss_pred CchHHHHHHHHhh-hhhhhccchhhHHHhHHHHHHHHhhhcCcccchHHHhhhcCchhHHHHhhccccceEeecCCCCcE
Confidence 5667778888888 899999999888 555 788888877766443333222222 45555544443 78999999
Q ss_pred ccccccccccccccccccccccccccccccCCccchhccchhhhhhhhh--hhhccccCCCCChhhHHHHHHHHHHhhhc
Q 011983 73 AGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLR--HLDNTLDGLYIAPAFMDKVVVHITKNFLN 150 (473)
Q Consensus 73 ~~~~~~~~~~~~~i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r--~f~~~~~~~~i~~~~~d~~~~~i~k~~l~ 150 (473)
- ..++.+.|+++|++|.+++.++++-+++.+.+.++-..|+|.+.+.| +|+++.+.+|+.++|.|++.+|+.++++.
T Consensus 80 v-vg~~~~~D~~~i~~G~rv~ldittltIm~~lprevd~vy~m~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf 158 (388)
T KOG0651|consen 80 V-VGCRRSVDKEKIARGTRVVLDITTLTIMRGLPREVDLVYNMSHEDPRNISFENVGGLFYQIRELREVIELPLTNPELF 158 (388)
T ss_pred E-EEcccccchhhhccCceeeeeeeeeehhcccchHHHHHHHhhhcCccccCHHHhCChHHHHHHHHhheEeeccCchhc
Confidence 7 99999999999999999999999999998888888877999999999 59999999999999999999999999999
Q ss_pred CC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 011983 151 LP-NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 151 ~~-~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
++ |+++|+|+|||||||||||++|++||..+|++|+.++++.+.++|.||+++.||+.|+.|+ .+.|||||+|||
T Consensus 159 ~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiGEsaRlIRemf~yA~----~~~pciifmdei 234 (388)
T KOG0651|consen 159 LRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIGESARLIRDMFRYAR----EVIPCIIFMDEI 234 (388)
T ss_pred cccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcccHHHHHHHHHHHHh----hhCceEEeehhh
Confidence 87 9999999999999999999999999999999999999999999999999999999999999 888999999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
|++.+++ .+++++++|+|+.+||+|++ +|+|+ ....+|++|+|||+|+.|||||+||||+|++|| +|+
T Consensus 235 DAigGRr--~se~Ts~dreiqrTLMeLln-----qmdgf---d~l~rVk~ImatNrpdtLdpaLlRpGRldrk~~iPlpn 304 (388)
T KOG0651|consen 235 DAIGGRR--FSEGTSSDREIQRTLMELLN-----QMDGF---DTLHRVKTIMATNRPDTLDPALLRPGRLDRKVEIPLPN 304 (388)
T ss_pred hhhccEE--eccccchhHHHHHHHHHHHH-----hhccc---hhcccccEEEecCCccccchhhcCCccccceeccCCcc
Confidence 9999998 47899999999999999999 99999 889999999999999999999999999999999 588
Q ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011983 308 REDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~ 387 (473)
...|..|+ .|+++.++|+|++. .+++.+|.+..+...+ .+.-...|.|..+..
T Consensus 305 e~~r~~I~-------------------Kih~~~i~~~Geid----~eaivK~~d~f~gad~----rn~~tEag~Fa~~~~ 357 (388)
T KOG0651|consen 305 EQARLGIL-------------------KIHVQPIDFHGEID----DEAILKLVDGFNGADL----RNVCTEAGMFAIPEE 357 (388)
T ss_pred hhhceeeE-------------------eecccccccccccc----HHHHHHHHhccChHHH----hhhcccccccccchh
Confidence 88888755 44555566666555 5556666666543331 111122458999999
Q ss_pred cHHHHHHHHhhhhhhHHHHHHHHHHHHHhh
Q 011983 388 TLDKLLEYGRMLVQEQENVKRVQLADKYLS 417 (473)
Q Consensus 388 t~e~ll~~~~~~v~eqe~v~~~~l~~~~~~ 417 (473)
+-+.+++.+.++|++|..+++.+++.+|++
T Consensus 358 ~~~vl~Ed~~k~vrk~~~~kkle~~~~Y~~ 387 (388)
T KOG0651|consen 358 RDEVLHEDFMKLVRKQADAKKLELSLDYKK 387 (388)
T ss_pred hHHHhHHHHHHHHHHHHHHHHhhhhhhhcc
Confidence 999999999999999999999999999963
No 3
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.6e-44 Score=360.99 Aligned_cols=190 Identities=24% Similarity=0.339 Sum_probs=176.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|++||+|+|||||||||||+||||+|++.++.||.+.+|+|..+|+|+.++.+|++|+-|+ .++||||||||||+
T Consensus 180 ~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVqKYiGEGaRlVRelF~lAr----ekaPsIIFiDEIDA 255 (406)
T COG1222 180 LGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQKYIGEGARLVRELFELAR----EKAPSIIFIDEIDA 255 (406)
T ss_pred cCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHHHHhccchHHHHHHHHHHh----hcCCeEEEEechhh
Confidence 38999999999999999999999999999999999999999999999999999999999887 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+..+|.+ ..+..++.|+.++++|+. ||||| ....+|-||+||||++.|||||+||||||+.|. +|+.+
T Consensus 256 Ig~kR~d--~~t~gDrEVQRTmleLL~-----qlDGF---D~~~nvKVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~ 325 (406)
T COG1222 256 IGAKRFD--SGTSGDREVQRTMLELLN-----QLDGF---DPRGNVKVIMATNRPDILDPALLRPGRFDRKIEFPLPDEE 325 (406)
T ss_pred hhccccc--CCCCchHHHHHHHHHHHH-----hccCC---CCCCCeEEEEecCCccccChhhcCCCcccceeecCCCCHH
Confidence 9988763 335567899999999998 99999 889999999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
.|.+||+.|.++ ++++++.+++++++|+|+++. |+|..+-.-|+|+
T Consensus 326 gR~~Il~IHtrkM~l~~dvd~e~la~~~~g~sGAdlk---aictEAGm~AiR~ 375 (406)
T COG1222 326 GRAEILKIHTRKMNLADDVDLELLARLTEGFSGADLK---AICTEAGMFAIRE 375 (406)
T ss_pred HHHHHHHHHhhhccCccCcCHHHHHHhcCCCchHHHH---HHHHHHhHHHHHh
Confidence 999999988776 678999999999999999998 8888777777765
No 4
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-42 Score=363.64 Aligned_cols=239 Identities=23% Similarity=0.342 Sum_probs=202.3
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..|+..|.|+|||||||||||+||||+|++.|++||.|.+.+|+++|+||+++.+|++|.+|+ ..+||||||||+|
T Consensus 539 ~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlNkYVGESErAVR~vFqRAR----~saPCVIFFDEiD 614 (802)
T KOG0733|consen 539 ALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLNKYVGESERAVRQVFQRAR----ASAPCVIFFDEID 614 (802)
T ss_pred HhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHHHHhhhHHHHHHHHHHHhh----cCCCeEEEecchh
Confidence 458899999999999999999999999999999999999999999999999999999999998 9999999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
+++++|+.. ...+..+.|+++|. +|||. +...+|.||++||||+.+|||++||||||+.+| +|+.
T Consensus 615 aL~p~R~~~-~s~~s~RvvNqLLt---------ElDGl---~~R~gV~viaATNRPDiIDpAiLRPGRlDk~LyV~lPn~ 681 (802)
T KOG0733|consen 615 ALVPRRSDE-GSSVSSRVVNQLLT---------ELDGL---EERRGVYVIAATNRPDIIDPAILRPGRLDKLLYVGLPNA 681 (802)
T ss_pred hcCcccCCC-CchhHHHHHHHHHH---------Hhccc---ccccceEEEeecCCCcccchhhcCCCccCceeeecCCCH
Confidence 999998753 34555677777664 58888 889999999999999999999999999999999 6999
Q ss_pred HHHHHHHHhhcCC------CCCCHHHHHHHHh--cCCCCchhhHHHHHHHhhHHHHHHHHHHhcch--hhhhhhccCCCC
Q 011983 309 EDRIGVCSGIFRT------DNVPKEDIVKLVD--TFPGQSIDFFGALRARVYDDEVRKWISEVGIE--RIGKRLVNSKEG 378 (473)
Q Consensus 309 eeR~~Il~~~l~~------~~v~~~~l~~l~~--~~sga~l~f~gal~~~~~~~av~~~i~~~g~~--~i~~~lv~~~~~ 378 (473)
++|..||+.+.++ .++++++|+.... +|+|+++. +|++.+...++++.+.++... .++....
T Consensus 682 ~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLa---aLvreAsi~AL~~~~~~~~~~~~~~~~~~~----- 753 (802)
T KOG0733|consen 682 EERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLA---ALVREASILALRESLFEIDSSEDDVTVRSS----- 753 (802)
T ss_pred HHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHH---HHHHHHHHHHHHHHHhhccccCcccceeee-----
Confidence 9999999999883 5788889998877 99999999 999998888888888764221 1111100
Q ss_pred CCCcCCCcccHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 011983 379 PPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 379 ~p~f~~~~~t~e~ll~~~~~~v~eqe~v~~~~l~~~~~ 416 (473)
+.......++..++..++.|.+|+..+|..|...|.
T Consensus 754 --~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 754 --TIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred --eeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 001112245667777888999999999999998884
No 5
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.3e-40 Score=350.11 Aligned_cols=221 Identities=22% Similarity=0.354 Sum_probs=185.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+.+|+|||||||||||||++||++|++.+.+|+.+++.+|+++|+|++|+.|+++|++|+ ..+||||||||||+
T Consensus 463 ~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~sk~vGeSEr~ir~iF~kAR----~~aP~IiFfDEiDs 538 (693)
T KOG0730|consen 463 FGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFSKYVGESERAIREVFRKAR----QVAPCIIFFDEIDA 538 (693)
T ss_pred hcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHHHhcCchHHHHHHHHHHHh----hcCCeEEehhhHHh
Confidence 37899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+++.|++. ...+.++.+++.| + +|||+ +...+|+||++||||+.||+||+||||||+.+| +|+.+
T Consensus 539 i~~~R~g~-~~~v~~RVlsqLL-t--------EmDG~---e~~k~V~ViAATNRpd~ID~ALlRPGRlD~iiyVplPD~~ 605 (693)
T KOG0730|consen 539 LAGSRGGS-SSGVTDRVLSQLL-T--------EMDGL---EALKNVLVIAATNRPDMIDPALLRPGRLDRIIYVPLPDLE 605 (693)
T ss_pred HhhccCCC-ccchHHHHHHHHH-H--------Hcccc---cccCcEEEEeccCChhhcCHHHcCCcccceeEeecCccHH
Confidence 99998743 3355566665555 3 58888 888999999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCC
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 385 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~ 385 (473)
.|.+||+.++++ ++++.+.|++.+++|||+++. ++|++++..++++-++.. ...
T Consensus 606 aR~~Ilk~~~kkmp~~~~vdl~~La~~T~g~SGAel~---~lCq~A~~~a~~e~i~a~-------------------~i~ 663 (693)
T KOG0730|consen 606 ARLEILKQCAKKMPFSEDVDLEELAQATEGYSGAEIV---AVCQEAALLALRESIEAT-------------------EIT 663 (693)
T ss_pred HHHHHHHHHHhcCCCCccccHHHHHHHhccCChHHHH---HHHHHHHHHHHHHhcccc-------------------ccc
Confidence 999999988876 457778999999999999998 888888777777665531 011
Q ss_pred cccHHHHHHHHhhhhhhHHHHHHHHH
Q 011983 386 KMTLDKLLEYGRMLVQEQENVKRVQL 411 (473)
Q Consensus 386 ~~t~e~ll~~~~~~v~eqe~v~~~~l 411 (473)
...++..+++.+..+...+...|..+
T Consensus 664 ~~hf~~al~~~r~s~~~~~~~~Ye~f 689 (693)
T KOG0730|consen 664 WQHFEEALKAVRPSLTSELLEKYEDF 689 (693)
T ss_pred HHHHHHHHHhhcccCCHHHHHHHHHH
Confidence 12244456666666666655555544
No 6
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-39 Score=347.00 Aligned_cols=240 Identities=20% Similarity=0.335 Sum_probs=200.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|.++..|||||||||||||++|||||.++.++|+.|.+.+|.++|+|++|+++|++|++|+ ..+||||||||+|+
T Consensus 700 sglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLNMYVGqSE~NVR~VFerAR----~A~PCVIFFDELDS 775 (953)
T KOG0736|consen 700 SGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLNMYVGQSEENVREVFERAR----SAAPCVIFFDELDS 775 (953)
T ss_pred ccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHHHHhcchHHHHHHHHHHhh----ccCCeEEEeccccc
Confidence 46788899999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCC-CccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEec---CC
Q 011983 232 GAGRMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA---PT 307 (473)
Q Consensus 232 l~~~r~~~-~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~---P~ 307 (473)
+++.|+.. ....+.+|.|.+.|.+ +||.. ......|+||+|||||+.|||+|+||||||+.+|+ -+
T Consensus 776 lAP~RG~sGDSGGVMDRVVSQLLAE---------LDgls-~~~s~~VFViGATNRPDLLDpALLRPGRFDKLvyvG~~~d 845 (953)
T KOG0736|consen 776 LAPNRGRSGDSGGVMDRVVSQLLAE---------LDGLS-DSSSQDVFVIGATNRPDLLDPALLRPGRFDKLVYVGPNED 845 (953)
T ss_pred cCccCCCCCCccccHHHHHHHHHHH---------hhccc-CCCCCceEEEecCCCccccChhhcCCCccceeEEecCCcc
Confidence 99987632 3456678888887765 55652 23678999999999999999999999999999994 36
Q ss_pred HHHHHHHHHhhcCC----CCCCHHHHHHHHh-cCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCc
Q 011983 308 REDRIGVCSGIFRT----DNVPKEDIVKLVD-TFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF 382 (473)
Q Consensus 308 ~eeR~~Il~~~l~~----~~v~~~~l~~l~~-~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f 382 (473)
.+.+..||+...++ .+++..++++.+. .|+|+++- ++|+.++..|+++-+..+....+.. . ..+-
T Consensus 846 ~esk~~vL~AlTrkFkLdedVdL~eiAk~cp~~~TGADlY---sLCSdA~l~AikR~i~~ie~g~~~~-----~--e~~~ 915 (953)
T KOG0736|consen 846 AESKLRVLEALTRKFKLDEDVDLVEIAKKCPPNMTGADLY---SLCSDAMLAAIKRTIHDIESGTISE-----E--EQES 915 (953)
T ss_pred HHHHHHHHHHHHHHccCCCCcCHHHHHhhCCcCCchhHHH---HHHHHHHHHHHHHHHHHhhhccccc-----c--ccCC
Confidence 78889999877665 5677778877664 78888776 9999999999999998864433322 1 1122
Q ss_pred CCCcccHHHHHHHHhhh---hhhHHHHHHHHHHHHH
Q 011983 383 EQPKMTLDKLLEYGRML---VQEQENVKRVQLADKY 415 (473)
Q Consensus 383 ~~~~~t~e~ll~~~~~~---v~eqe~v~~~~l~~~~ 415 (473)
....++.|+++++.+.+ +.+||...|..++++|
T Consensus 916 ~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~f 951 (953)
T KOG0736|consen 916 SSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQF 951 (953)
T ss_pred ceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhh
Confidence 34467788998887764 9999999999998887
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.9e-39 Score=336.70 Aligned_cols=198 Identities=24% Similarity=0.338 Sum_probs=174.4
Q ss_pred hcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecC
Q 011983 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228 (473)
Q Consensus 149 l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 228 (473)
....|+.||+|+|||||||||||+||++||++++++|+.+++.++.+++.|++++.||++|++|. ...|||+||||
T Consensus 215 ~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSGESEkkiRelF~~A~----~~aPcivFiDe 290 (802)
T KOG0733|consen 215 FSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSGESEKKIRELFDQAK----SNAPCIVFIDE 290 (802)
T ss_pred HhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCcccHHHHHHHHHHHh----ccCCeEEEeec
Confidence 34458999999999999999999999999999999999999999999999999999999999998 99999999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cC
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 306 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P 306 (473)
||++.++|.. .+..++.++| +.|++.+|++.+... ....|+||+|||||+.|||+|+|+||||+.|. +|
T Consensus 291 IDAI~pkRe~-aqreMErRiV-aQLlt~mD~l~~~~~-------~g~~VlVIgATnRPDslDpaLRRaGRFdrEI~l~vP 361 (802)
T KOG0733|consen 291 IDAITPKREE-AQREMERRIV-AQLLTSMDELSNEKT-------KGDPVLVIGATNRPDSLDPALRRAGRFDREICLGVP 361 (802)
T ss_pred ccccccchhh-HHHHHHHHHH-HHHHHhhhccccccc-------CCCCeEEEecCCCCcccCHHHhccccccceeeecCC
Confidence 9999999875 4545555555 556666664433332 24679999999999999999999999999999 69
Q ss_pred CHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 307 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
++.+|.+||+.+++. .+++...|++++.+|.|+++. |||..+...++++.++.
T Consensus 362 ~e~aR~~IL~~~~~~lrl~g~~d~~qlA~lTPGfVGADL~---AL~~~Aa~vAikR~ld~ 418 (802)
T KOG0733|consen 362 SETAREEILRIICRGLRLSGDFDFKQLAKLTPGFVGADLM---ALCREAAFVAIKRILDQ 418 (802)
T ss_pred chHHHHHHHHHHHhhCCCCCCcCHHHHHhcCCCccchhHH---HHHHHHHHHHHHHHhhc
Confidence 999999999988875 467888999999999999999 99999999999997775
No 8
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.7e-39 Score=316.71 Aligned_cols=273 Identities=22% Similarity=0.316 Sum_probs=225.1
Q ss_pred hhhhhhhhhhhcccccccccccccccccccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCCh-hhHHH
Q 011983 61 YDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAP-AFMDK 139 (473)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~-~~~d~ 139 (473)
|+||+.++|.+.++++... ..++..||+|...|+..|++++++.+.+.+- -..+...+|++- .|+|+
T Consensus 74 MEEEFI~NQe~~k~~e~~~-------ee~r~~vd~lRGtPmsvg~leEiidd~haiv-----st~~g~e~Yv~IlSfVdK 141 (440)
T KOG0726|consen 74 MEEEFIRNQERLKPQEEKQ-------EEERSKVDDLRGTPMSVGTLEEIIDDNHAIV-----STSVGSEYYVSILSFVDK 141 (440)
T ss_pred HHHHHHhhccccCCchhhh-------HHHHhHHHhhcCCccccccHHHHhcCCceEE-----ecccCchheeeeeeeccH
Confidence 7999999999999988866 4567899999999999999999987643321 112223333332 33332
Q ss_pred H--------------------------------------------------HHHHHHhhhcCC----------CCCCCcE
Q 011983 140 V--------------------------------------------------VVHITKNFLNLP----------NVKVPLI 159 (473)
Q Consensus 140 ~--------------------------------------------------~~~i~k~~l~~~----------~~~~p~g 159 (473)
. .+..+|.-+.+| |+++|+|
T Consensus 142 dlLepgcsvll~~k~~avvGvL~d~~dpmv~vmK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKG 221 (440)
T KOG0726|consen 142 DLLEPGCSVLLNHKVHAVVGVLQDDTDPMVSVMKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKG 221 (440)
T ss_pred hhcCCCCeeeeccccceEEEEeccCCCccceeeecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCe
Confidence 2 222344444433 8999999
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCC
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGT 239 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~ 239 (473)
++|||+||||||+||+|+|++..+.|+.+-+++|..+|.|+..+++|++|+.|. .++|+|+||||||++..+|-+.
T Consensus 222 VIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLiQkylGdGpklvRqlF~vA~----e~apSIvFiDEIdAiGtKRyds 297 (440)
T KOG0726|consen 222 VILYGEPGTGKTLLAKAVANQTSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----EHAPSIVFIDEIDAIGTKRYDS 297 (440)
T ss_pred eEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHHHHHhccchHHHHHHHHHHH----hcCCceEEeehhhhhccccccC
Confidence 999999999999999999999999999999999999999999999999999887 9999999999999999887642
Q ss_pred CccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHh
Q 011983 240 TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSG 317 (473)
Q Consensus 240 ~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~ 317 (473)
.+...+.++.++++|++ |+||| .....|-||++||+.+.|||+|+||||+|+.|. .|+...+..||..
T Consensus 298 --~SggerEiQrtmLELLN-----QldGF---dsrgDvKvimATnrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~I 367 (440)
T KOG0726|consen 298 --NSGGEREIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQI 367 (440)
T ss_pred --CCccHHHHHHHHHHHHH-----hccCc---cccCCeEEEEecccccccCHhhcCCCccccccccCCCchhhhceeEEE
Confidence 23456889999999999 99999 889999999999999999999999999999999 5899999999986
Q ss_pred hcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 318 IFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 318 ~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
+... .+++.+++..--+.++|+++. |+|..+-.-++|+.-..
T Consensus 368 HTs~Mtl~~dVnle~li~~kddlSGAdIk---AictEaGllAlRerRm~ 413 (440)
T KOG0726|consen 368 HTSRMTLAEDVNLEELIMTKDDLSGADIK---AICTEAGLLALRERRMK 413 (440)
T ss_pred eecccchhccccHHHHhhcccccccccHH---HHHHHHhHHHHHHHHhh
Confidence 6554 678888888888999999998 88877777776655444
No 9
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6e-37 Score=308.49 Aligned_cols=242 Identities=21% Similarity=0.267 Sum_probs=203.3
Q ss_pred CC-CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 153 NV-KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 153 ~~-~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
|+ +|-+|+|++||||||||+||||||.++|..|+.|+.+.|.++|-|++++.+|-+|+.|+ .++|++|||||||+
T Consensus 240 GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltSKwRGeSEKlvRlLFemAR----fyAPStIFiDEIDs 315 (491)
T KOG0738|consen 240 GIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMAR----FYAPSTIFIDEIDS 315 (491)
T ss_pred hcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhhhhccchHHHHHHHHHHHH----HhCCceeehhhHHH
Confidence 44 45599999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCC-CCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN-PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~-~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
|+++|++.+. ....+++...|+- ||||....... ..|+|+++||-|+.||+||+| ||++.|+ +|+.
T Consensus 316 lcs~RG~s~E-HEaSRRvKsELLv--------QmDG~~~t~e~~k~VmVLAATN~PWdiDEAlrR--RlEKRIyIPLP~~ 384 (491)
T KOG0738|consen 316 LCSQRGGSSE-HEASRRVKSELLV--------QMDGVQGTLENSKVVMVLAATNFPWDIDEALRR--RLEKRIYIPLPDA 384 (491)
T ss_pred HHhcCCCccc-hhHHHHHHHHHHH--------HhhccccccccceeEEEEeccCCCcchHHHHHH--HHhhheeeeCCCH
Confidence 9999886433 3445666666654 67777433333 448899999999999999999 9999999 6999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCC
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQ 384 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~ 384 (473)
+.|..+++..++. ++++.++|++.+++|+|++|. .+|..+....+|+.+..+..+.|... ....|....
T Consensus 385 ~~R~~Li~~~l~~~~~~~~~~~~~lae~~eGySGaDI~---nvCreAsm~~mRR~i~g~~~~ei~~l----akE~~~~pv 457 (491)
T KOG0738|consen 385 EARSALIKILLRSVELDDPVNLEDLAERSEGYSGADIT---NVCREASMMAMRRKIAGLTPREIRQL----AKEEPKMPV 457 (491)
T ss_pred HHHHHHHHHhhccccCCCCccHHHHHHHhcCCChHHHH---HHHHHHHHHHHHHHHhcCCcHHhhhh----hhhcccccc
Confidence 9999999988875 678899999999999999999 88999999999999998765554321 111222333
Q ss_pred CcccHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 011983 385 PKMTLDKLLEYGRMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 385 ~~~t~e~ll~~~~~~v~eqe~v~~~~l~~~~~ 416 (473)
....++..+...+++++..+..++++|.++|.
T Consensus 458 ~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efG 489 (491)
T KOG0738|consen 458 TNEDFEEALRKVRPSVSAADLEKYEKWMDEFG 489 (491)
T ss_pred chhhHHHHHHHcCcCCCHHHHHHHHHHHHHhc
Confidence 45678889999999999999999999998884
No 10
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.1e-37 Score=316.56 Aligned_cols=183 Identities=22% Similarity=0.309 Sum_probs=160.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|.+.|+||||.||||||||+||+|+|.+.+++|++++++++...|+|..++.+|.+|..|+ ..+||||||||||+
T Consensus 332 LGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VGvGArRVRdLF~aAk----~~APcIIFIDEiDa 407 (752)
T KOG0734|consen 332 LGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVGVGARRVRDLFAAAK----ARAPCIIFIDEIDA 407 (752)
T ss_pred ccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhcccHHHHHHHHHHHH----hcCCeEEEEechhh
Confidence 36799999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+.++|....+. ..+|.+++.|. +|||| ..+.+|+||++||.|+.||+||+||||||+.+. .|+..
T Consensus 408 vG~kR~~~~~~-y~kqTlNQLLv---------EmDGF---~qNeGiIvigATNfpe~LD~AL~RPGRFD~~v~Vp~PDv~ 474 (752)
T KOG0734|consen 408 VGGKRNPSDQH-YAKQTLNQLLV---------EMDGF---KQNEGIIVIGATNFPEALDKALTRPGRFDRHVTVPLPDVR 474 (752)
T ss_pred hcccCCccHHH-HHHHHHHHHHH---------HhcCc---CcCCceEEEeccCChhhhhHHhcCCCccceeEecCCCCcc
Confidence 99987654332 44566666663 69999 888899999999999999999999999999999 48999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~ 354 (473)
.|.+||+.|+.+ +++|++-|++=+.+|+|++++ .+...+...
T Consensus 475 GR~eIL~~yl~ki~~~~~VD~~iiARGT~GFsGAdLa---NlVNqAAlk 520 (752)
T KOG0734|consen 475 GRTEILKLYLSKIPLDEDVDPKIIARGTPGFSGADLA---NLVNQAALK 520 (752)
T ss_pred cHHHHHHHHHhcCCcccCCCHhHhccCCCCCchHHHH---HHHHHHHHH
Confidence 999999988876 578888888888888888887 555444333
No 11
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.1e-35 Score=281.52 Aligned_cols=190 Identities=25% Similarity=0.346 Sum_probs=170.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
-|+.||+|+|||||||||||+|++++|++....||.+.++++..+|.|+..+.+|.+|+-|+ .++|+||||||+|+
T Consensus 184 igidpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkylgegprmvrdvfrlak----enapsiifideida 259 (408)
T KOG0727|consen 184 IGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYLGEGPRMVRDVFRLAK----ENAPSIIFIDEIDA 259 (408)
T ss_pred hCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHhccCcHHHHHHHHHHh----ccCCcEEEeehhhh
Confidence 48999999999999999999999999999999999999999999999999999999999887 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++.+|-+ ..+..++.|...|++++. ||||| ....+|-||++||+.+.|||+|+||||+|+.|. +|++.
T Consensus 260 iatkrfd--aqtgadrevqril~elln-----qmdgf---dq~~nvkvimatnradtldpallrpgrldrkiefplpdrr 329 (408)
T KOG0727|consen 260 IATKRFD--AQTGADREVQRILIELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDRR 329 (408)
T ss_pred Hhhhhcc--ccccccHHHHHHHHHHHH-----hccCc---CcccceEEEEecCcccccCHhhcCCccccccccCCCCchh
Confidence 9987543 224556888888999998 99999 889999999999999999999999999999999 58888
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+++-+|..+..+ +.++.+++...-+..+|+++. ++|+.+-..++|+
T Consensus 330 qkrlvf~titskm~ls~~vdle~~v~rpdkis~adi~---aicqeagm~avr~ 379 (408)
T KOG0727|consen 330 QKRLVFSTITSKMNLSDEVDLEDLVARPDKISGADIN---AICQEAGMLAVRE 379 (408)
T ss_pred hhhhhHHhhhhcccCCcccCHHHHhcCccccchhhHH---HHHHHHhHHHHHh
Confidence 888888866655 567777888888899999998 8888887777764
No 12
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.1e-34 Score=305.03 Aligned_cols=194 Identities=22% Similarity=0.339 Sum_probs=177.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.++.+.|||||||||||||+||.++|...+..||.+.+++|.++|+|.+++++|.+|.+|. ..+||||||||+|++
T Consensus 697 plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIGaSEq~vR~lF~rA~----~a~PCiLFFDEfdSi 772 (952)
T KOG0735|consen 697 PLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIGASEQNVRDLFERAQ----SAKPCILFFDEFDSI 772 (952)
T ss_pred CcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhcccHHHHHHHHHHhh----ccCCeEEEecccccc
Confidence 4678899999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
+++|+. ..-.+.++.|++.|. +|||. +...+|.|+++|.||+.|||||+||||+|+.++ +|+..+
T Consensus 773 APkRGh-DsTGVTDRVVNQlLT---------elDG~---Egl~GV~i~aaTsRpdliDpALLRpGRlD~~v~C~~P~~~e 839 (952)
T KOG0735|consen 773 APKRGH-DSTGVTDRVVNQLLT---------ELDGA---EGLDGVYILAATSRPDLIDPALLRPGRLDKLVYCPLPDEPE 839 (952)
T ss_pred CcccCC-CCCCchHHHHHHHHH---------hhccc---cccceEEEEEecCCccccCHhhcCCCccceeeeCCCCCcHH
Confidence 999885 344677888888775 47787 778999999999999999999999999999999 799999
Q ss_pred HHHHHHhhcC----CCCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcch
Q 011983 311 RIGVCSGIFR----TDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIE 366 (473)
Q Consensus 311 R~~Il~~~l~----~~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~ 366 (473)
|.+|++.+.. .++++.+-++..+++|+|+++. +++-.+...++++|+.+.+.+
T Consensus 840 Rl~il~~ls~s~~~~~~vdl~~~a~~T~g~tgADlq---~ll~~A~l~avh~~l~~~~~~ 896 (952)
T KOG0735|consen 840 RLEILQVLSNSLLKDTDVDLECLAQKTDGFTGADLQ---SLLYNAQLAAVHEILKREDEE 896 (952)
T ss_pred HHHHHHHHhhccCCccccchHHHhhhcCCCchhhHH---HHHHHHHHHHHHHHHHhcCcc
Confidence 9999995543 4788999999999999999998 899999999999999996543
No 13
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.9e-34 Score=311.55 Aligned_cols=220 Identities=21% Similarity=0.281 Sum_probs=172.8
Q ss_pred hhccccCCCCChhhHHHHHHHHHHhhh--cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCC
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITKNFL--NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k~~l--~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge 200 (473)
|+++.+-.+...++++ .++..||-. ...|.+.|+|+||+||||||||+||||+|.+.|+||+.++++++...++|.
T Consensus 310 FkDVAG~deAK~El~E--~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~~~g~ 387 (774)
T KOG0731|consen 310 FKDVAGVDEAKEELME--FVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEMFVGV 387 (774)
T ss_pred cccccCcHHHHHHHHH--HHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHHhccc
Confidence 6665554333333332 233334322 134899999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCC---CCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCc
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGG---TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~---~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V 277 (473)
...++|.+|..|+ .++||||||||||++...|++ ....+...+.+++.| ++|||+ ....+|
T Consensus 388 ~asrvr~lf~~ar----~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll---------~emDgf---~~~~~v 451 (774)
T KOG0731|consen 388 GASRVRDLFPLAR----KNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLL---------VEMDGF---ETSKGV 451 (774)
T ss_pred chHHHHHHHHHhh----ccCCeEEEecccccccccccccccCCCChHHHHHHHHHH---------HHhcCC---cCCCcE
Confidence 9999999999998 999999999999999988852 122233345555555 369999 777899
Q ss_pred eEEEecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCCCCC-----CHHHHHHHHhcCCCCchhhHHHHHHH
Q 011983 278 PIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTDNV-----PKEDIVKLVDTFPGQSIDFFGALRAR 350 (473)
Q Consensus 278 ~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~~v-----~~~~l~~l~~~~sga~l~f~gal~~~ 350 (473)
+|+++||+++.||+||+||||||+.++ +|+..+|.+|++.++++.++ ++..++.++.+|+|++|. .+|..
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~---n~~ne 528 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLA---NLCNE 528 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHH---hhhhH
Confidence 999999999999999999999999999 69999999999988876444 444677888899998887 55555
Q ss_pred hhHHHHHHHHHHh
Q 011983 351 VYDDEVRKWISEV 363 (473)
Q Consensus 351 ~~~~av~~~i~~~ 363 (473)
+...++|+-...+
T Consensus 529 aa~~a~r~~~~~i 541 (774)
T KOG0731|consen 529 AALLAARKGLREI 541 (774)
T ss_pred HHHHHHHhccCcc
Confidence 5555555443333
No 14
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.5e-33 Score=265.32 Aligned_cols=190 Identities=19% Similarity=0.296 Sum_probs=165.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+..|+|+|||||||||||+||+++|++....||.+++++|..+|+|+..+.+|++|-.|+ .++|+|||+||||+
T Consensus 176 LGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgselvqk~igegsrmvrelfvmar----ehapsiifmdeids 251 (404)
T KOG0728|consen 176 LGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDS 251 (404)
T ss_pred cCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHH----hcCCceEeeecccc
Confidence 38899999999999999999999999999999999999999999999999999999999888 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEec--CCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~--P~~e 309 (473)
+.+.|..++ ...+..|+.+++++++ |+||| +...++-||++||+.+.|||||+||||+|+.|.+ |+.+
T Consensus 252 igs~r~e~~--~ggdsevqrtmlelln-----qldgf---eatknikvimatnridild~allrpgridrkiefp~p~e~ 321 (404)
T KOG0728|consen 252 IGSSRVESG--SGGDSEVQRTMLELLN-----QLDGF---EATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEE 321 (404)
T ss_pred cccccccCC--CCccHHHHHHHHHHHH-----hcccc---ccccceEEEEeccccccccHhhcCCCcccccccCCCCCHH
Confidence 988765322 2245678889999998 99999 9999999999999999999999999999999994 8999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
.|.+||+.+-++ .+++...+++-..+.+|+.+. ++|..+-.-++|+
T Consensus 322 ar~~ilkihsrkmnl~rgi~l~kiaekm~gasgaevk---~vcteagm~alre 371 (404)
T KOG0728|consen 322 ARLDILKIHSRKMNLTRGINLRKIAEKMPGASGAEVK---GVCTEAGMYALRE 371 (404)
T ss_pred HHHHHHHHhhhhhchhcccCHHHHHHhCCCCccchhh---hhhhhhhHHHHHH
Confidence 999999987776 456677777777777777765 5665555555543
No 15
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.4e-33 Score=268.55 Aligned_cols=191 Identities=23% Similarity=0.333 Sum_probs=169.8
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..|+++|+|+|+|||||||||++|++.|.+.+..|+.+.++.|..+|+|..++++|..|.-|. ..+|+||||||+|
T Consensus 199 ~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAK----EkaP~IIFIDElD 274 (424)
T KOG0652|consen 199 NLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQMFIGDGAKLVRDAFALAK----EKAPTIIFIDELD 274 (424)
T ss_pred hcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHhhhhcchHHHHHHHHHHhh----ccCCeEEEEechh
Confidence 458999999999999999999999999999999999999999999999999999999999776 8999999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
++..+|.+ +....++.|+.+++++++ |+||| ....+|-||++||+.+.|||+|+|.||+|+.|. .|+.
T Consensus 275 AIGtKRfD--Sek~GDREVQRTMLELLN-----QLDGF---ss~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne 344 (424)
T KOG0652|consen 275 AIGTKRFD--SEKAGDREVQRTMLELLN-----QLDGF---SSDDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNE 344 (424)
T ss_pred hhcccccc--ccccccHHHHHHHHHHHH-----hhcCC---CCccceEEEeecccccccCHHHhhcccccccccCCCCCh
Confidence 99887653 233457899999999998 99999 888999999999999999999999999999999 4899
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+.|..|++.+.++ ++++.++++..++.|.|+... |+|-.+-+-++|+
T Consensus 345 ~aRarIlQIHsRKMnv~~DvNfeELaRsTddFNGAQcK---AVcVEAGMiALRr 395 (424)
T KOG0652|consen 345 EARARILQIHSRKMNVSDDVNFEELARSTDDFNGAQCK---AVCVEAGMIALRR 395 (424)
T ss_pred HHHHHHHHHhhhhcCCCCCCCHHHHhhcccccCchhhe---eeehhhhHHHHhc
Confidence 9999999977776 577888999999999888776 6665555555554
No 16
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-32 Score=266.62 Aligned_cols=189 Identities=21% Similarity=0.320 Sum_probs=162.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+.||+|+|||||||||||+.|+++|+..+.-||.+-+++|..+|+|+.++.+|++|+.|+ ..+-|||||||||+
T Consensus 206 lgidppkgvllygppgtgktl~aravanrtdacfirvigselvqkyvgegarmvrelf~mar----tkkaciiffdeida 281 (435)
T KOG0729|consen 206 LGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 281 (435)
T ss_pred cCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHHHHHhhhhHHHHHHHHHHhc----ccceEEEEeecccc
Confidence 37999999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+.+.|-+.. ...+..|+.++++|+. |+||| ....++-|+++||+|+.|||||+||||+|+.+. +|+.+
T Consensus 282 iggarfddg--~ggdnevqrtmleli~-----qldgf---dprgnikvlmatnrpdtldpallrpgrldrkvef~lpdle 351 (435)
T KOG0729|consen 282 IGGARFDDG--AGGDNEVQRTMLELIN-----QLDGF---DPRGNIKVLMATNRPDTLDPALLRPGRLDRKVEFGLPDLE 351 (435)
T ss_pred ccCccccCC--CCCcHHHHHHHHHHHH-----hccCC---CCCCCeEEEeecCCCCCcCHhhcCCcccccceeccCCccc
Confidence 988643221 1234578888899988 99999 889999999999999999999999999999998 69999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
.|..||+.+.+. .++-.+.++.|+..-.|+++. .+|..+-+-+++
T Consensus 352 grt~i~kihaksmsverdir~ellarlcpnstgaeir---svcteagmfair 400 (435)
T KOG0729|consen 352 GRTHIFKIHAKSMSVERDIRFELLARLCPNSTGAEIR---SVCTEAGMFAIR 400 (435)
T ss_pred ccceeEEEeccccccccchhHHHHHhhCCCCcchHHH---HHHHHhhHHHHH
Confidence 999999977776 355566888888887777765 444444333333
No 17
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=3.5e-32 Score=304.54 Aligned_cols=238 Identities=23% Similarity=0.373 Sum_probs=190.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++++|+.|+ ...||||||||+|+
T Consensus 482 ~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~~vGese~~i~~~f~~A~----~~~p~iifiDEid~ 557 (733)
T TIGR01243 482 MGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSKWVGESEKAIREIFRKAR----QAAPAIIFFDEIDA 557 (733)
T ss_pred cCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhcccCcHHHHHHHHHHHHH----hcCCEEEEEEChhh
Confidence 46789999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+++.++......+..+.++++| . +++|. ....+++||+|||+++.||++++||||||+.++ +|+.+
T Consensus 558 l~~~r~~~~~~~~~~~~~~~lL-~--------~ldg~---~~~~~v~vI~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~ 625 (733)
T TIGR01243 558 IAPARGARFDTSVTDRIVNQLL-T--------EMDGI---QELSNVVVIAATNRPDILDPALLRPGRFDRLILVPPPDEE 625 (733)
T ss_pred hhccCCCCCCccHHHHHHHHHH-H--------Hhhcc---cCCCCEEEEEeCCChhhCCHhhcCCCccceEEEeCCcCHH
Confidence 9987764333333344455444 3 34455 456789999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCc-CC
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTF-EQ 384 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f-~~ 384 (473)
+|.+||+.+... .+++.+.+++.+++|+|+++. ++|..+...++++.+.....+.+... .+.+ ..
T Consensus 626 ~R~~i~~~~~~~~~~~~~~~l~~la~~t~g~sgadi~---~~~~~A~~~a~~~~~~~~~~~~~~~~-------~~~~~~~ 695 (733)
T TIGR01243 626 ARKEIFKIHTRSMPLAEDVDLEELAEMTEGYTGADIE---AVCREAAMAALRESIGSPAKEKLEVG-------EEEFLKD 695 (733)
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhccchhhhcc-------ccccccc
Confidence 999999987765 356778999999999999998 88888888888887765322222110 0001 12
Q ss_pred CcccHHHH---HHHHhhhhhhHHHHHHHHHHHHH
Q 011983 385 PKMTLDKL---LEYGRMLVQEQENVKRVQLADKY 415 (473)
Q Consensus 385 ~~~t~e~l---l~~~~~~v~eqe~v~~~~l~~~~ 415 (473)
..++.+++ ++..++.+.+++...|.+|.++|
T Consensus 696 ~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~ 729 (733)
T TIGR01243 696 LKVEMRHFLEALKKVKPSVSKEDMLRYERLAKEL 729 (733)
T ss_pred CcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 34555554 55566788898888899988877
No 18
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.3e-32 Score=269.38 Aligned_cols=248 Identities=21% Similarity=0.285 Sum_probs=184.3
Q ss_pred hcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecC
Q 011983 149 LNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228 (473)
Q Consensus 149 l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 228 (473)
+...+.+|-+|||||||||||||+||+++|.+.+..|+.|+.++|.++|.|+++++++++|+.|+ .++|+||||||
T Consensus 158 lFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWmGESEkLVknLFemAR----e~kPSIIFiDE 233 (439)
T KOG0739|consen 158 LFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKNLFEMAR----ENKPSIIFIDE 233 (439)
T ss_pred hhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHhccHHHHHHHHHHHHH----hcCCcEEEeeh
Confidence 33444566799999999999999999999999999999999999999999999999999999888 99999999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cC
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--AP 306 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P 306 (473)
||++++.|+.+.. ....++-..+| |||.|+ .....+|+|+++||-|+.||.|++| ||++.|| +|
T Consensus 234 iDslcg~r~enEs-easRRIKTEfL---------VQMqGV--G~d~~gvLVLgATNiPw~LDsAIRR--RFekRIYIPLP 299 (439)
T KOG0739|consen 234 IDSLCGSRSENES-EASRRIKTEFL---------VQMQGV--GNDNDGVLVLGATNIPWVLDSAIRR--RFEKRIYIPLP 299 (439)
T ss_pred hhhhccCCCCCch-HHHHHHHHHHH---------Hhhhcc--ccCCCceEEEecCCCchhHHHHHHH--HhhcceeccCC
Confidence 9999998875322 22233334444 467777 3567889999999999999999999 9999999 69
Q ss_pred CHHHHHHHHHhhcCCC--CCC---HHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh------cch--hhhhhhc
Q 011983 307 TREDRIGVCSGIFRTD--NVP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV------GIE--RIGKRLV 373 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~~--~v~---~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~------g~~--~i~~~lv 373 (473)
+...|..+|+.++.+. .++ ...+...+++|+|+++. -+...+..+-+|+.-... +-. .....++
T Consensus 300 e~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDis---ivVrDalmePvRkvqsAthFk~v~~~s~~~~~~~ll 376 (439)
T KOG0739|consen 300 EAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDIS---IVVRDALMEPVRKVQSATHFKKVSGPSNPSEVDDLL 376 (439)
T ss_pred cHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceE---EEehhhhhhhHHHhhhhhhhhccCCCCChhhhcccc
Confidence 9999999999988763 333 44677788999999987 344445555555433332 100 0011111
Q ss_pred cC-CCCCC-------------CcCCCcccHHHHHHHH---hhhhhhHHHHHHHHHHHHHhh
Q 011983 374 NS-KEGPP-------------TFEQPKMTLDKLLEYG---RMLVQEQENVKRVQLADKYLS 417 (473)
Q Consensus 374 ~~-~~~~p-------------~f~~~~~t~e~ll~~~---~~~v~eqe~v~~~~l~~~~~~ 417 (473)
.. -.+.| .+..|.++..+++.+. ++.|.+.+..+-.+..++|.+
T Consensus 377 tpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGq 437 (439)
T KOG0739|consen 377 TPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQ 437 (439)
T ss_pred CCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhcc
Confidence 11 11111 2245577777765554 456888888888888877754
No 19
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=4.5e-32 Score=290.91 Aligned_cols=231 Identities=22% Similarity=0.309 Sum_probs=182.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
|.+.|+|+||+||||||||+||+++|.+.++||+.+|++++...++|-.+..+|.+|.+|+ +++||||||||||++
T Consensus 179 GakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemfVGvGAsRVRdLF~qAk----k~aP~IIFIDEiDAv 254 (596)
T COG0465 179 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDAV 254 (596)
T ss_pred ccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhhcCCCcHHHHHHHHHhh----ccCCCeEEEehhhhc
Confidence 5699999999999999999999999999999999999999999999999999999999998 999999999999999
Q ss_pred cccCCCC--CccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGT--TQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~--~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
...|+.+ ..++...|.++++| |+|||+ .....|+||++||||+.||+||+||||||+.+. .|+.
T Consensus 255 Gr~Rg~g~GggnderEQTLNQlL---------vEmDGF---~~~~gviviaaTNRpdVlD~ALlRpgRFDRqI~V~~PDi 322 (596)
T COG0465 255 GRQRGAGLGGGNDEREQTLNQLL---------VEMDGF---GGNEGVIVIAATNRPDVLDPALLRPGRFDRQILVELPDI 322 (596)
T ss_pred ccccCCCCCCCchHHHHHHHHHH---------hhhccC---CCCCceEEEecCCCcccchHhhcCCCCcceeeecCCcch
Confidence 8877533 12223345555555 469999 667899999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh---cchhhhhhhccCCCCCC-
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV---GIERIGKRLVNSKEGPP- 380 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~---g~~~i~~~lv~~~~~~p- 380 (473)
..|.+|++.+.++ ..++...+++.+.+|+|+++. .++..+..-+.|+--..+ ..+.-..+++...+..+
T Consensus 323 ~gRe~IlkvH~~~~~l~~~Vdl~~iAr~tpGfsGAdL~---nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 323 KGREQILKVHAKNKPLAEDVDLKKIARGTPGFSGADLA---NLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred hhHHHHHHHHhhcCCCCCcCCHHHHhhhCCCcccchHh---hhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 9999999977775 457777899999999999997 555444444444322222 22222233333333222
Q ss_pred CcCCCcccHHHHHHHHhhhhhh
Q 011983 381 TFEQPKMTLDKLLEYGRMLVQE 402 (473)
Q Consensus 381 ~f~~~~~t~e~ll~~~~~~v~e 402 (473)
.+.+.+....+-++++|.++..
T Consensus 400 vise~ek~~~AYhEaghalv~~ 421 (596)
T COG0465 400 VISEAEKKITAYHEAGHALVGL 421 (596)
T ss_pred ccChhhhcchHHHHHHHHHHHH
Confidence 4666677777888888887553
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=6e-32 Score=290.06 Aligned_cols=188 Identities=24% Similarity=0.378 Sum_probs=162.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.++|+|+|||||||||||++|+++|++++.+|+.+..+++.++|+|+++++|+++|..|+ ..+||||||||+|++
T Consensus 272 ~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~sk~vGesek~ir~~F~~A~----~~~p~iiFiDEiDs~ 347 (494)
T COG0464 272 GLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLSKWVGESEKNIRELFEKAR----KLAPSIIFIDEIDSL 347 (494)
T ss_pred CCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhccccchHHHHHHHHHHHHH----cCCCcEEEEEchhhh
Confidence 6789999999999999999999999999999999999999999999999999999999998 899999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
++.|+.... ... .++.+.|+. +++|. +...+|+||+|||+++.||++++||||||+.++ +|+.++
T Consensus 348 ~~~r~~~~~-~~~-~r~~~~lL~--------~~d~~---e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 348 ASGRGPSED-GSG-RRVVGQLLT--------ELDGI---EKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred hccCCCCCc-hHH-HHHHHHHHH--------HhcCC---CccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 998764222 222 344444544 34555 677889999999999999999999999999999 599999
Q ss_pred HHHHHHhhcCC------CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHH
Q 011983 311 RIGVCSGIFRT------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 360 (473)
Q Consensus 311 R~~Il~~~l~~------~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i 360 (473)
|.+||+.++.. .+++...+++.+++|+|+++. +++..+...++++.+
T Consensus 415 r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~---~i~~ea~~~~~~~~~ 467 (494)
T COG0464 415 RLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIA---ALVREAALEALREAR 467 (494)
T ss_pred HHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHH---HHHHHHHHHHHHHhc
Confidence 99999999883 357777889999999999888 777777777777664
No 21
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.9e-32 Score=283.89 Aligned_cols=196 Identities=17% Similarity=0.293 Sum_probs=170.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcC----CceEEEe
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKG----KMCCLFI 226 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~-~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~----~p~ILfI 226 (473)
.|++..+|||||||||||||++||.|.+.++. ++-.++++++.++|+|++|.++|.+|..|.+.-+.. .--||+|
T Consensus 251 lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIF 330 (744)
T KOG0741|consen 251 LGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIF 330 (744)
T ss_pred cCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEe
Confidence 37889999999999999999999999999876 778899999999999999999999999998776632 2359999
Q ss_pred cCCCCccccCCCCCc-cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-
Q 011983 227 NDLDAGAGRMGGTTQ-YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 304 (473)
Q Consensus 227 DEiDal~~~r~~~~~-~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~- 304 (473)
||||+++.+|+.... ..+.++.|+++|.. |||. +...+++||+.|||.+.||+||+|||||+..++
T Consensus 331 DEiDAICKqRGS~~g~TGVhD~VVNQLLsK---------mDGV---eqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEI 398 (744)
T KOG0741|consen 331 DEIDAICKQRGSMAGSTGVHDTVVNQLLSK---------MDGV---EQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEI 398 (744)
T ss_pred hhhHHHHHhcCCCCCCCCccHHHHHHHHHh---------cccH---HhhhcEEEEeccCchhhHHHHhcCCCceEEEEEE
Confidence 999999998875444 35667888887754 7888 888999999999999999999999999999988
Q ss_pred -cCCHHHHHHHHHhhcCC--------CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 305 -APTREDRIGVCSGIFRT--------DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 305 -~P~~eeR~~Il~~~l~~--------~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
+|+++.|.+|++.+... .+++.++++.+++.|+|+.++ ++...+..-++.+.++.
T Consensus 399 sLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEle---glVksA~S~A~nR~vk~ 462 (744)
T KOG0741|consen 399 SLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELE---GLVKSAQSFAMNRHVKA 462 (744)
T ss_pred eCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHH---HHHHHHHHHHHHhhhcc
Confidence 79999999999855543 689999999999999999998 77777777777776665
No 22
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=3.3e-31 Score=282.52 Aligned_cols=180 Identities=22% Similarity=0.328 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+.+|+|+|||||||||||++|+++|++++.+|+.++.+.+.++|+|+++.+++++|+.|. ..+||||||||||+
T Consensus 254 ~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGese~~l~~~f~~A~----~~~P~IL~IDEID~ 329 (489)
T CHL00195 254 YGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGESESRMRQMIRIAE----ALSPCILWIDEIDK 329 (489)
T ss_pred cCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccChHHHHHHHHHHHHH----hcCCcEEEehhhhh
Confidence 47789999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++..+........ ..++..+|+..++ ....+|+||+|||+++.||++++|+||||+.|+ +|+.+
T Consensus 330 ~~~~~~~~~d~~~-~~rvl~~lL~~l~-------------~~~~~V~vIaTTN~~~~Ld~allR~GRFD~~i~v~lP~~~ 395 (489)
T CHL00195 330 AFSNSESKGDSGT-TNRVLATFITWLS-------------EKKSPVFVVATANNIDLLPLEILRKGRFDEIFFLDLPSLE 395 (489)
T ss_pred hhccccCCCCchH-HHHHHHHHHHHHh-------------cCCCceEEEEecCChhhCCHHHhCCCcCCeEEEeCCcCHH
Confidence 9875432222222 3344455555343 446789999999999999999999999999999 69999
Q ss_pred HHHHHHHhhcCCC------CCCHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 011983 310 DRIGVCSGIFRTD------NVPKEDIVKLVDTFPGQSIDFFGALRARVY 352 (473)
Q Consensus 310 eR~~Il~~~l~~~------~v~~~~l~~l~~~~sga~l~f~gal~~~~~ 352 (473)
+|.+||+.++.+. +.+.+.+++.+++|+|+++. +++..++
T Consensus 396 eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~---~lv~eA~ 441 (489)
T CHL00195 396 EREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIE---QSIIEAM 441 (489)
T ss_pred HHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHH---HHHHHHH
Confidence 9999999888652 45677888899999888887 4444443
No 23
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=4.3e-31 Score=281.75 Aligned_cols=239 Identities=19% Similarity=0.266 Sum_probs=180.3
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC----------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK 220 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~ 220 (473)
..++++|+++|||||||||||++|+++|++++.+ |+.++.+++.++|+|++++.++.+|+.|...+..+.
T Consensus 210 ~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~ 289 (512)
T TIGR03689 210 EYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGR 289 (512)
T ss_pred hccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCC
Confidence 4578899999999999999999999999998654 667888899999999999999999999987777788
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
||||||||+|+++..|+.........+.+ ..|++ .++|. ....+++||+|||+++.|||+|+||||||
T Consensus 290 p~IIfIDEiD~L~~~R~~~~s~d~e~~il-~~LL~--------~LDgl---~~~~~ViVI~ATN~~d~LDpALlRpGRfD 357 (512)
T TIGR03689 290 PVIVFFDEMDSIFRTRGSGVSSDVETTVV-PQLLS--------ELDGV---ESLDNVIVIGASNREDMIDPAILRPGRLD 357 (512)
T ss_pred CceEEEehhhhhhcccCCCccchHHHHHH-HHHHH--------Hhccc---ccCCceEEEeccCChhhCCHhhcCccccc
Confidence 99999999999998765433333333333 34444 34555 44578999999999999999999999999
Q ss_pred EEEe--cCCHHHHHHHHHhhcCCC-CCCHHHHHHHHhcCCCCchh-----------------------------------
Q 011983 301 KFYW--APTREDRIGVCSGIFRTD-NVPKEDIVKLVDTFPGQSID----------------------------------- 342 (473)
Q Consensus 301 ~~i~--~P~~eeR~~Il~~~l~~~-~v~~~~l~~l~~~~sga~l~----------------------------------- 342 (473)
..|+ .|+.++|.+||+.++... ++ .+++. ...+++++++.
T Consensus 358 ~~I~~~~Pd~e~r~~Il~~~l~~~l~l-~~~l~-~~~g~~~a~~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~ 435 (512)
T TIGR03689 358 VKIRIERPDAEAAADIFSKYLTDSLPL-DADLA-EFDGDREATAAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFK 435 (512)
T ss_pred eEEEeCCCCHHHHHHHHHHHhhccCCc-hHHHH-HhcCCCHHHHHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeec
Confidence 9988 599999999999998653 33 22222 23444444443
Q ss_pred --hHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Q 011983 343 --FFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADKYLSEA 419 (473)
Q Consensus 343 --f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~t~e~ll~~~~~~v~eqe~v~~~~l~~~~~~~~ 419 (473)
++||+.+.+++.+....++.. +. -....++.++|+.+......|++.......+++|.+..
T Consensus 436 d~~sGa~i~~iv~~a~~~ai~~~---------~~-------~~~~~~~~~~l~~a~~~e~~~~~~~~~~~~~~~w~~~~ 498 (512)
T TIGR03689 436 DFVSGAMIANIVDRAKKRAIKDH---------IT-------GGQVGLRIEHLLAAVLDEFRESEDLPNTTNPDDWARIS 498 (512)
T ss_pred ccccHHHHHHHHHHHHHHHHHHH---------Hh-------cCCcCcCHHHHHHHHHHhhcccccCCCCCCHHHHhhhh
Confidence 234444444444433333331 00 12247889999999999999999999999999997763
No 24
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.97 E-value=3.4e-31 Score=255.48 Aligned_cols=198 Identities=23% Similarity=0.299 Sum_probs=159.7
Q ss_pred HHHHHHhhhcCC---CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH
Q 011983 141 VVHITKNFLNLP---NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK 217 (473)
Q Consensus 141 ~~~i~k~~l~~~---~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~ 217 (473)
...++-.||..| +-=-|+.+|||||||||||++|+++|++...+|+.|.+.+|.++++|+.++.|+++|++|+
T Consensus 132 kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVGdgar~Ihely~rA~---- 207 (368)
T COG1223 132 KCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVGDGARRIHELYERAR---- 207 (368)
T ss_pred HHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhhhHHHHHHHHHHHHH----
Confidence 344555666655 4457999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCC
Q 011983 218 KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDG 297 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~G 297 (473)
+.+|||+||||+|+++-.|.-.....--...|+++|. +|||. ..+.+|..|++||+|+.||+++++
T Consensus 208 ~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLT---------elDgi---~eneGVvtIaaTN~p~~LD~aiRs-- 273 (368)
T COG1223 208 KAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLT---------ELDGI---KENEGVVTIAATNRPELLDPAIRS-- 273 (368)
T ss_pred hcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHH---------hccCc---ccCCceEEEeecCChhhcCHHHHh--
Confidence 8899999999999997654321111111245555553 47777 678999999999999999999999
Q ss_pred CceEEEe--cCCHHHHHHHHHhhcCCCC----CCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 298 RMEKFYW--APTREDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 298 Rfd~~i~--~P~~eeR~~Il~~~l~~~~----v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
||+..|. +|+.++|..|++.+.++.+ .+...+++.+.++||.++. .++...++.+.|.+
T Consensus 274 RFEeEIEF~LP~~eEr~~ile~y~k~~Plpv~~~~~~~~~~t~g~SgRdik------ekvlK~aLh~Ai~e 338 (368)
T COG1223 274 RFEEEIEFKLPNDEERLEILEYYAKKFPLPVDADLRYLAAKTKGMSGRDIK------EKVLKTALHRAIAE 338 (368)
T ss_pred hhhheeeeeCCChHHHHHHHHHHHHhCCCccccCHHHHHHHhCCCCchhHH------HHHHHHHHHHHHHh
Confidence 9999888 7999999999999988743 4466889999999999885 44444444444443
No 25
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=264.50 Aligned_cols=226 Identities=20% Similarity=0.332 Sum_probs=178.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
.++|+|||||||||||||++|+++|++.|.+|+.|+.+.+.++|+|+.+++++.+|.-|. +.+||||||||+|.+.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~KWfgE~eKlv~AvFslAs----Kl~P~iIFIDEvds~L 199 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSKWFGEAQKLVKAVFSLAS----KLQPSIIFIDEVDSFL 199 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchhhHHHHHHHHHHHHhhhh----hcCcceeehhhHHHHH
Confidence 579999999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR 311 (473)
+.| ..++ ..-.+++.+.+|.+-| |. .+....+|+|++|||||..||.|++| ||.+.++ +|+.++|
T Consensus 200 ~~R-~s~d-HEa~a~mK~eFM~~WD--------Gl-~s~~~~rVlVlgATNRP~DlDeAiiR--R~p~rf~V~lP~~~qR 266 (386)
T KOG0737|consen 200 GQR-RSTD-HEATAMMKNEFMALWD--------GL-SSKDSERVLVLGATNRPFDLDEAIIR--RLPRRFHVGLPDAEQR 266 (386)
T ss_pred hhc-ccch-HHHHHHHHHHHHHHhc--------cc-cCCCCceEEEEeCCCCCccHHHHHHH--hCcceeeeCCCchhhH
Confidence 887 3333 3334555555665443 33 33455679999999999999999999 9999988 6999999
Q ss_pred HHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHh-cchhhhhhhccCCCCCC---CcC
Q 011983 312 IGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEV-GIERIGKRLVNSKEGPP---TFE 383 (473)
Q Consensus 312 ~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~-g~~~i~~~lv~~~~~~p---~f~ 383 (473)
.+||+-++++ +++|...++..+++|+|.++. .+|..+....+++.+..- +.......+...+...+ ...
T Consensus 267 ~kILkviLk~e~~e~~vD~~~iA~~t~GySGSDLk---elC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~ 343 (386)
T KOG0737|consen 267 RKILKVILKKEKLEDDVDLDEIAQMTEGYSGSDLK---ELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCL 343 (386)
T ss_pred HHHHHHHhcccccCcccCHHHHHHhcCCCcHHHHH---HHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccc
Confidence 9999999987 456788999999999999998 788888888888888882 21122221111111111 122
Q ss_pred CCcccHHHHHHHHhhh
Q 011983 384 QPKMTLDKLLEYGRML 399 (473)
Q Consensus 384 ~~~~t~e~ll~~~~~~ 399 (473)
-..++.+++..+.+..
T Consensus 344 ~r~l~~eDf~~a~~~v 359 (386)
T KOG0737|consen 344 LRPLEQEDFPKAINRV 359 (386)
T ss_pred cCcccHHHHHHHHHhh
Confidence 3456778887776643
No 26
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=1.7e-30 Score=271.22 Aligned_cols=191 Identities=22% Similarity=0.322 Sum_probs=158.7
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..|+.+|+++|||||||||||++|+++|++++.+|+.+.++++..+|+|++++.++.+|..|. ..+|+||||||+|
T Consensus 173 ~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~k~~ge~~~~lr~lf~~A~----~~~P~ILfIDEID 248 (398)
T PTZ00454 173 QIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEVD 248 (398)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHHHhcchhHHHHHHHHHHHH----hcCCeEEEEECHh
Confidence 457889999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
+++..+.+... ..+..+...+.+++. +++|+ ....++.||+|||+++.|||+++|+||||+.|+ +|+.
T Consensus 249 ~i~~~r~~~~~--~~d~~~~r~l~~LL~-----~ld~~---~~~~~v~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~ 318 (398)
T PTZ00454 249 SIATKRFDAQT--GADREVQRILLELLN-----QMDGF---DQTTNVKVIMATNRADTLDPALLRPGRLDRKIEFPLPDR 318 (398)
T ss_pred hhccccccccC--CccHHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEecCCchhCCHHHcCCCcccEEEEeCCcCH
Confidence 99876542111 112333444555554 45555 445789999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
++|..||+.++.+ .+++.+.++..+++|+|+++. ++|..+...++++
T Consensus 319 ~~R~~Il~~~~~~~~l~~dvd~~~la~~t~g~sgaDI~---~l~~eA~~~A~r~ 369 (398)
T PTZ00454 319 RQKRLIFQTITSKMNLSEEVDLEDFVSRPEKISAADIA---AICQEAGMQAVRK 369 (398)
T ss_pred HHHHHHHHHHHhcCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHc
Confidence 9999999988775 356777888999999999888 7777776666544
No 27
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=7e-30 Score=266.58 Aligned_cols=191 Identities=24% Similarity=0.356 Sum_probs=160.5
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..|+.+|+++|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|+.|. ..+|+||||||+|
T Consensus 159 ~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~IlfiDEiD 234 (389)
T PRK03992 159 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQKFIGEGARLVRELFELAR----EKAPSIIFIDEID 234 (389)
T ss_pred hcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhHhhccchHHHHHHHHHHHH----hcCCeEEEEechh
Confidence 457899999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
+++..+.+.. ......+...+++++. +++|+ ....++.||+|||+++.||++|+||||||+.|+ .|+.
T Consensus 235 ~l~~~r~~~~--~~~~~~~~~~l~~lL~-----~ld~~---~~~~~v~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~ 304 (389)
T PRK03992 235 AIAAKRTDSG--TSGDREVQRTLMQLLA-----EMDGF---DPRGNVKIIAATNRIDILDPAILRPGRFDRIIEVPLPDE 304 (389)
T ss_pred hhhcccccCC--CCccHHHHHHHHHHHH-----hcccc---CCCCCEEEEEecCChhhCCHHHcCCccCceEEEECCCCH
Confidence 9987765322 1222344555556554 45655 455789999999999999999999999999998 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
++|.+||+.++.. .+++.+.++..+++|+|+++. +++.++...++++
T Consensus 305 ~~R~~Il~~~~~~~~~~~~~~~~~la~~t~g~sgadl~---~l~~eA~~~a~~~ 355 (389)
T PRK03992 305 EGRLEILKIHTRKMNLADDVDLEELAELTEGASGADLK---AICTEAGMFAIRD 355 (389)
T ss_pred HHHHHHHHHHhccCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHc
Confidence 9999999988875 346778999999999999888 7777766665553
No 28
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=9.6e-30 Score=293.70 Aligned_cols=183 Identities=9% Similarity=0.056 Sum_probs=143.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCC----------CC-----------------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN----------AG----------------------- 199 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~----------~G----------------------- 199 (473)
|.++|+||||+||||||||+|||++|.+++++|+.|+++++.+++ +|
T Consensus 1626 Gl~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~ 1705 (2281)
T CHL00206 1626 ALSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMM 1705 (2281)
T ss_pred CCCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhc
Confidence 678999999999999999999999999999999999999988654 12
Q ss_pred --------ChH--HHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCc
Q 011983 200 --------EPA--KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY 269 (473)
Q Consensus 200 --------e~~--~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~ 269 (473)
+.+ ..|+.+|+.|+ +.+||||||||||++..+.. . ......|++.+ +|..
T Consensus 1706 n~~~~~m~~~e~~~rIr~lFelAR----k~SPCIIFIDEIDaL~~~ds-------~-~ltL~qLLneL--------Dg~~ 1765 (2281)
T CHL00206 1706 NALTMDMMPKIDRFYITLQFELAK----AMSPCIIWIPNIHDLNVNES-------N-YLSLGLLVNSL--------SRDC 1765 (2281)
T ss_pred chhhhhhhhhhhHHHHHHHHHHHH----HCCCeEEEEEchhhcCCCcc-------c-eehHHHHHHHh--------cccc
Confidence 222 24788999887 89999999999999986521 0 11234455533 3331
Q ss_pred ccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhc-------CCCCCCHHHHHHHHhcCCCCc
Q 011983 270 NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIF-------RTDNVPKEDIVKLVDTFPGQS 340 (473)
Q Consensus 270 ~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l-------~~~~v~~~~l~~l~~~~sga~ 340 (473)
......+|+||||||+|+.|||||+||||||+.|. .|+..+|.+++..++ .+..++.+.++..+.+|+|+|
T Consensus 1766 ~~~s~~~VIVIAATNRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGAD 1845 (2281)
T CHL00206 1766 ERCSTRNILVIASTHIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARD 1845 (2281)
T ss_pred ccCCCCCEEEEEeCCCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHH
Confidence 11345789999999999999999999999999999 488888888876432 223467889999999999999
Q ss_pred hhhHHHHHHHhhHHHHHH
Q 011983 341 IDFFGALRARVYDDEVRK 358 (473)
Q Consensus 341 l~f~gal~~~~~~~av~~ 358 (473)
+. +++.++...++++
T Consensus 1846 La---nLvNEAaliAirq 1860 (2281)
T CHL00206 1846 LV---ALTNEALSISITQ 1860 (2281)
T ss_pred HH---HHHHHHHHHHHHc
Confidence 98 7777776666654
No 29
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.96 E-value=1.7e-29 Score=271.41 Aligned_cols=185 Identities=21% Similarity=0.297 Sum_probs=151.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+.++|+++|||||||||||++|+++|++++.+|+.++++++.+.++|..++.++.+|+.|. ..+||||||||+|+
T Consensus 83 ~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~~~g~~~~~l~~~f~~a~----~~~p~Il~iDEid~ 158 (495)
T TIGR01241 83 LGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMFVGVGASRVRDLFEQAK----KNAPCIIFIDEIDA 158 (495)
T ss_pred cCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 35788999999999999999999999999999999999999999999999999999999987 88999999999999
Q ss_pred ccccCCCCCc--cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 232 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 232 l~~~r~~~~~--~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
++..+..... .....+.++++| . +++++ ....+++||+|||+++.||++|+||||||+.++ .|+
T Consensus 159 l~~~r~~~~~~~~~~~~~~~~~lL-~--------~~d~~---~~~~~v~vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd 226 (495)
T TIGR01241 159 VGRQRGAGLGGGNDEREQTLNQLL-V--------EMDGF---GTNTGVIVIAATNRPDVLDPALLRPGRFDRQVVVDLPD 226 (495)
T ss_pred hhhccccCcCCccHHHHHHHHHHH-h--------hhccc---cCCCCeEEEEecCChhhcCHHHhcCCcceEEEEcCCCC
Confidence 9877653211 111223344333 2 35555 445679999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHH
Q 011983 308 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~a 355 (473)
.++|.+||+.++... +++.+.++..+.+|+|+++. +++.++...+
T Consensus 227 ~~~R~~il~~~l~~~~~~~~~~l~~la~~t~G~sgadl~---~l~~eA~~~a 275 (495)
T TIGR01241 227 IKGREEILKVHAKNKKLAPDVDLKAVARRTPGFSGADLA---NLLNEAALLA 275 (495)
T ss_pred HHHHHHHHHHHHhcCCCCcchhHHHHHHhCCCCCHHHHH---HHHHHHHHHH
Confidence 999999999888764 35566888888888888887 5555544433
No 30
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=4.4e-29 Score=262.81 Aligned_cols=190 Identities=22% Similarity=0.334 Sum_probs=157.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.++.+|+++|||||||||||++|+++|++++.+|+.+.++++.++|.|+.++.++.+|+.|. .+.|+||||||||+
T Consensus 212 ~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~k~~Ge~~~~vr~lF~~A~----~~~P~ILfIDEID~ 287 (438)
T PTZ00361 212 IGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQKYLGDGPKLVRELFRVAE----ENAPSIVFIDEIDA 287 (438)
T ss_pred cCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhhhhcchHHHHHHHHHHHHH----hCCCcEEeHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999887 88999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++.++.... +...+.+..++++++. +++|+ ....++.||+|||+++.||++++|+||||+.|+ .|+.+
T Consensus 288 l~~kR~~~~--sgg~~e~qr~ll~LL~-----~Ldg~---~~~~~V~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~ 357 (438)
T PTZ00361 288 IGTKRYDAT--SGGEKEIQRTMLELLN-----QLDGF---DSRGDVKVIMATNRIESLDPALIRPGRIDRKIEFPNPDEK 357 (438)
T ss_pred HhccCCCCC--CcccHHHHHHHHHHHH-----HHhhh---cccCCeEEEEecCChHHhhHHhccCCeeEEEEEeCCCCHH
Confidence 987764321 1122334444555554 45665 445689999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+|.+||+.++.+ .+++.++++..+++|+|+++. ++|..+...++++
T Consensus 358 ~R~~Il~~~~~k~~l~~dvdl~~la~~t~g~sgAdI~---~i~~eA~~~Alr~ 407 (438)
T PTZ00361 358 TKRRIFEIHTSKMTLAEDVDLEEFIMAKDELSGADIK---AICTEAGLLALRE 407 (438)
T ss_pred HHHHHHHHHHhcCCCCcCcCHHHHHHhcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 999999988765 457778899999999988887 6666666555553
No 31
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.4e-28 Score=261.91 Aligned_cols=241 Identities=24% Similarity=0.294 Sum_probs=187.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCC-ceEEEecCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLD 230 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~ILfIDEiD 230 (473)
.++++|+++|+|||||||||+++++||++.++.++.++++++.+++.|++++++|++|++|. +++ |+||||||+|
T Consensus 213 ~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte~~LR~~f~~a~----k~~~psii~IdEld 288 (693)
T KOG0730|consen 213 IGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETESNLRKAFAEAL----KFQVPSIIFIDELD 288 (693)
T ss_pred cCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchHHHHHHHHHHHh----ccCCCeeEeHHhHh
Confidence 47899999999999999999999999999999999999999999999999999999999998 888 9999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
++++++..... ..+++...|+.+++ ++ ....+++||+|||+|+.||++++| ||||+.+. +|+.
T Consensus 289 ~l~p~r~~~~~---~e~Rv~sqlltL~d----------g~-~~~~~vivl~atnrp~sld~alRR-gRfd~ev~IgiP~~ 353 (693)
T KOG0730|consen 289 ALCPKREGADD---VESRVVSQLLTLLD----------GL-KPDAKVIVLAATNRPDSLDPALRR-GRFDREVEIGIPGS 353 (693)
T ss_pred hhCCcccccch---HHHHHHHHHHHHHh----------hC-cCcCcEEEEEecCCccccChhhhc-CCCcceeeecCCCc
Confidence 99998764222 45677788888888 33 356899999999999999999999 99999999 6999
Q ss_pred HHHHHHHHhhcCCCC----CCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCC
Q 011983 309 EDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQ 384 (473)
Q Consensus 309 eeR~~Il~~~l~~~~----v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~ 384 (473)
.+|.+|++.+++..+ .++.+++..+.+|.|+++. ++|..+...++++-.+.........+. +.......+-
T Consensus 354 ~~RldIl~~l~k~~~~~~~~~l~~iA~~thGyvGaDL~---~l~~ea~~~~~r~~~~~~~~A~~~i~p--sa~Re~~ve~ 428 (693)
T KOG0730|consen 354 DGRLDILRVLTKKMNLLSDVDLEDIAVSTHGYVGADLA---ALCREASLQATRRTLEIFQEALMGIRP--SALREILVEM 428 (693)
T ss_pred hhHHHHHHHHHHhcCCcchhhHHHHHHHccchhHHHHH---HHHHHHHHHHhhhhHHHHHHHHhcCCc--hhhhheeccC
Confidence 999999998887633 5566888899999999998 888888888888722221110000000 0111233567
Q ss_pred CcccHHHH--HHHHhhhhhhHHHH-HHHHHHHHHhhh
Q 011983 385 PKMTLDKL--LEYGRMLVQEQENV-KRVQLADKYLSE 418 (473)
Q Consensus 385 ~~~t~e~l--l~~~~~~v~eqe~v-~~~~l~~~~~~~ 418 (473)
++.+++++ ++..+... |+.| ...+.+++|.+.
T Consensus 429 p~v~W~dIGGlE~lK~el--q~~V~~p~~~pe~F~r~ 463 (693)
T KOG0730|consen 429 PNVSWDDIGGLEELKREL--QQAVEWPLKHPEKFARF 463 (693)
T ss_pred CCCChhhccCHHHHHHHH--HHHHhhhhhchHHHHHh
Confidence 78888886 33322222 2233 235666777665
No 32
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.6e-28 Score=269.31 Aligned_cols=185 Identities=23% Similarity=0.321 Sum_probs=147.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.+.|+++|||||||||||++|+++|++++.+|+.++++++...++|.....++.+|..|. ...||||||||+|++
T Consensus 212 g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~~g~~~~~vr~lF~~A~----~~~P~ILfIDEID~l 287 (638)
T CHL00176 212 GAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMFVGVGAARVRDLFKKAK----ENSPCIVFIDEIDAV 287 (638)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHhhhhhHHHHHHHHHHHh----cCCCcEEEEecchhh
Confidence 5688999999999999999999999999999999999999998899988899999999997 899999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
...++...... +....++|..++. +++|+ ....+++||+|||+++.||++|+||||||+.+. .|+.++
T Consensus 288 ~~~r~~~~~~~--~~e~~~~L~~LL~-----~~dg~---~~~~~ViVIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~ 357 (638)
T CHL00176 288 GRQRGAGIGGG--NDEREQTLNQLLT-----EMDGF---KGNKGVIVIAATNRVDILDAALLRPGRFDRQITVSLPDREG 357 (638)
T ss_pred hhcccCCCCCC--cHHHHHHHHHHHh-----hhccc---cCCCCeeEEEecCchHhhhhhhhccccCceEEEECCCCHHH
Confidence 87664322111 1222233333333 45665 456789999999999999999999999999998 699999
Q ss_pred HHHHHHhhcCCCCC----CHHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011983 311 RIGVCSGIFRTDNV----PKEDIVKLVDTFPGQSIDFFGALRARVYDD 354 (473)
Q Consensus 311 R~~Il~~~l~~~~v----~~~~l~~l~~~~sga~l~f~gal~~~~~~~ 354 (473)
|.+||+.++....+ +...++..+.+|+|+++. .++.++...
T Consensus 358 R~~IL~~~l~~~~~~~d~~l~~lA~~t~G~sgaDL~---~lvneAal~ 402 (638)
T CHL00176 358 RLDILKVHARNKKLSPDVSLELIARRTPGFSGADLA---NLLNEAAIL 402 (638)
T ss_pred HHHHHHHHHhhcccchhHHHHHHHhcCCCCCHHHHH---HHHHHHHHH
Confidence 99999999876433 344566666777777776 444444333
No 33
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=254.56 Aligned_cols=235 Identities=18% Similarity=0.234 Sum_probs=185.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
..+++++||.||||+|||+|+++||.+.++.|+.++++.|.++|+|+.++.+|.+|.-|+ ..+|+||||||+|.++
T Consensus 183 r~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr----~~qPsvifidEidsll 258 (428)
T KOG0740|consen 183 REPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSKYVGESEKLVRALFKVAR----SLQPSVIFIDEIDSLL 258 (428)
T ss_pred ccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHH----hcCCeEEEechhHHHH
Confidence 357799999999999999999999999999999999999999999999999999999888 9999999999999999
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 311 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR 311 (473)
..|.+ ..+..+.++..++|+++. |. .....++|+||+|||+|+.+|.+++| ||-++++ +|+.+.|
T Consensus 259 s~Rs~-~e~e~srr~ktefLiq~~---------~~-~s~~~drvlvigaTN~P~e~Dea~~R--rf~kr~yiplPd~etr 325 (428)
T KOG0740|consen 259 SKRSD-NEHESSRRLKTEFLLQFD---------GK-NSAPDDRVLVIGATNRPWELDEAARR--RFVKRLYIPLPDYETR 325 (428)
T ss_pred hhcCC-cccccchhhhhHHHhhhc---------cc-cCCCCCeEEEEecCCCchHHHHHHHH--HhhceeeecCCCHHHH
Confidence 98853 444556677777776633 33 23456799999999999999999999 9999999 5999999
Q ss_pred HHHHHhhcCCCC-----CCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCc
Q 011983 312 IGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPK 386 (473)
Q Consensus 312 ~~Il~~~l~~~~-----v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~ 386 (473)
..+|+.++...+ .+.+.+++++++|+|.++. ++|..+....++........+ .......+|.+.+
T Consensus 326 ~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~---~l~kea~~~p~r~~~~~~~~~-----~~~~~~~r~i~~~-- 395 (428)
T KOG0740|consen 326 SLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDIT---ALCKEAAMGPLRELGGTTDLE-----FIDADKIRPITYP-- 395 (428)
T ss_pred HHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHH---HHHHHhhcCchhhcccchhhh-----hcchhccCCCCcc--
Confidence 999999887642 3455888999999999998 888777666555433321111 1112222332322
Q ss_pred ccHHHHHHHHhhhhhhHHHHHHHHHHHHHh
Q 011983 387 MTLDKLLEYGRMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 387 ~t~e~ll~~~~~~v~eqe~v~~~~l~~~~~ 416 (473)
..+...+.....+..+...+|..|..+|.
T Consensus 396 -df~~a~~~i~~~~s~~~l~~~~~~~~~fg 424 (428)
T KOG0740|consen 396 -DFKNAFKNIKPSVSLEGLEKYEKWDKEFG 424 (428)
T ss_pred -hHHHHHHhhccccCccccchhHHHhhhhc
Confidence 34556677777888888888888877763
No 34
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=1.8e-27 Score=246.27 Aligned_cols=190 Identities=24% Similarity=0.342 Sum_probs=155.3
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..++.+|+++|||||||||||++|+++|++++.+|+.+.++++...|.|+....++.+|+.|. ...|+||||||+|
T Consensus 150 ~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~il~iDEiD 225 (364)
T TIGR01242 150 EVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVRKYIGEGARLVREIFELAK----EKAPSIIFIDEID 225 (364)
T ss_pred hcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHHHhhhHHHHHHHHHHHHHH----hcCCcEEEhhhhh
Confidence 346789999999999999999999999999999999999999999999999999999999887 8899999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
.+...+.+.. ......+...+.+++. +++++ ....++.||+|||+++.+|++++|+||||+.++ .|+.
T Consensus 226 ~l~~~~~~~~--~~~~~~~~~~l~~ll~-----~ld~~---~~~~~v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~ 295 (364)
T TIGR01242 226 AIAAKRTDSG--TSGDREVQRTLMQLLA-----ELDGF---DPRGNVKVIAATNRPDILDPALLRPGRFDRIIEVPLPDF 295 (364)
T ss_pred hhccccccCC--CCccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEecCChhhCChhhcCcccCceEEEeCCcCH
Confidence 9987654321 1122334444555554 34444 445689999999999999999999999999988 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
++|.+||+.++.. .+++.+.++..+++|+|+++. +++..+...+++
T Consensus 296 ~~r~~Il~~~~~~~~l~~~~~~~~la~~t~g~sg~dl~---~l~~~A~~~a~~ 345 (364)
T TIGR01242 296 EGRLEILKIHTRKMKLAEDVDLEAIAKMTEGASGADLK---AICTEAGMFAIR 345 (364)
T ss_pred HHHHHHHHHHHhcCCCCccCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHH
Confidence 9999999988765 346788999999999888887 666666555544
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.95 E-value=4.1e-27 Score=259.77 Aligned_cols=187 Identities=21% Similarity=0.291 Sum_probs=154.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.+.|+++||+||||||||++|+++|++++.+|+.++++++...++|..+..++.+|..|. ..+||||||||+|++
T Consensus 181 ~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g~~~~~~~~~f~~a~----~~~P~IifIDEiD~l 256 (644)
T PRK10733 181 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 256 (644)
T ss_pred CCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhcccHHHHHHHHHHHH----hcCCcEEEehhHhhh
Confidence 4578899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred cccCCCCCc--cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~~~--~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
+.+++.... .....+.+++.|. +++|+ ....+++||+|||+++.||++++||||||+.+. +|+.
T Consensus 257 ~~~r~~~~~g~~~~~~~~ln~lL~---------~mdg~---~~~~~vivIaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~ 324 (644)
T PRK10733 257 GRQRGAGLGGGHDEREQTLNQMLV---------EMDGF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 324 (644)
T ss_pred hhccCCCCCCCchHHHHHHHHHHH---------hhhcc---cCCCCeeEEEecCChhhcCHHHhCCcccceEEEcCCCCH
Confidence 887653211 1122334444443 46666 556789999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 309 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 309 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
++|.+||+.++... +++...++..+.+|+|+++. +++..+...++++
T Consensus 325 ~~R~~Il~~~~~~~~l~~~~d~~~la~~t~G~sgadl~---~l~~eAa~~a~r~ 375 (644)
T PRK10733 325 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA---NLVNEAALFAARG 375 (644)
T ss_pred HHHHHHHHHHhhcCCCCCcCCHHHHHhhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 99999999998763 45666788888888888887 6666665555543
No 36
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=5.5e-26 Score=253.71 Aligned_cols=186 Identities=20% Similarity=0.286 Sum_probs=155.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEe
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFI 226 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfI 226 (473)
.++.+|+|+|+|||||||||+.|+++|..+ .+.|++-++.++.++|+|+.++.++.+|++|. +.+|+|||+
T Consensus 294 ~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkgaD~lskwvgEaERqlrllFeeA~----k~qPSIIff 369 (1080)
T KOG0732|consen 294 FNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKGADCLSKWVGEAERQLRLLFEEAQ----KTQPSIIFF 369 (1080)
T ss_pred cccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcCchhhccccCcHHHHHHHHHHHHh----ccCceEEec
Confidence 478999999999999999999999999995 46888899999999999999999999999998 999999999
Q ss_pred cCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--
Q 011983 227 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 304 (473)
Q Consensus 227 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-- 304 (473)
||||-+++.|+. .+...... +..+|+.+++ |. ...+.|+||+||||++.+||||+||||||+.+|
T Consensus 370 deIdGlapvrSs-kqEqih~S-IvSTLLaLmd--------Gl---dsRgqVvvigATnRpda~dpaLRRPgrfdref~f~ 436 (1080)
T KOG0732|consen 370 DEIDGLAPVRSS-KQEQIHAS-IVSTLLALMD--------GL---DSRGQVVVIGATNRPDAIDPALRRPGRFDREFYFP 436 (1080)
T ss_pred cccccccccccc-hHHHhhhh-HHHHHHHhcc--------CC---CCCCceEEEcccCCccccchhhcCCcccceeEeee
Confidence 999999998753 33333334 4467777555 55 667999999999999999999999999999999
Q ss_pred cCCHHHHHHHHHhhcCC--CCCCH---HHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 305 APTREDRIGVCSGIFRT--DNVPK---EDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~--~~v~~---~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
+|+.+.|.+|+..+..+ ..+.. +.+++.+.+|.|+++. |+|..+...+++
T Consensus 437 lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlk---aLCTeAal~~~~ 491 (1080)
T KOG0732|consen 437 LPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLK---ALCTEAALIALR 491 (1080)
T ss_pred CCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHH---HHHHHHhhhhhc
Confidence 69999999999977765 34443 3677778888888877 777666665554
No 37
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.92 E-value=2.9e-24 Score=240.86 Aligned_cols=191 Identities=23% Similarity=0.330 Sum_probs=159.8
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..++.+|+++|||||||||||++|+++|++++.+|+.++++++.+++.|+.+..++.+|+.|. ...|+||||||+|
T Consensus 206 ~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~~~g~~~~~l~~lf~~a~----~~~p~il~iDEid 281 (733)
T TIGR01243 206 HLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSKYYGESEERLREIFKEAE----ENAPSIIFIDEID 281 (733)
T ss_pred hcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcccccHHHHHHHHHHHHHH----hcCCcEEEeehhh
Confidence 346789999999999999999999999999999999999999999999999999999999987 8899999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
.+++.++.. ... ....+...|+++++ +. .....++||+|||+++.||++++|+|||+..+. +|+.
T Consensus 282 ~l~~~r~~~-~~~-~~~~~~~~Ll~~ld--------~l---~~~~~vivI~atn~~~~ld~al~r~gRfd~~i~i~~P~~ 348 (733)
T TIGR01243 282 AIAPKREEV-TGE-VEKRVVAQLLTLMD--------GL---KGRGRVIVIGATNRPDALDPALRRPGRFDREIVIRVPDK 348 (733)
T ss_pred hhcccccCC-cch-HHHHHHHHHHHHhh--------cc---ccCCCEEEEeecCChhhcCHHHhCchhccEEEEeCCcCH
Confidence 999876532 222 23445566666665 22 334678999999999999999999999999888 6999
Q ss_pred HHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011983 309 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361 (473)
Q Consensus 309 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~ 361 (473)
++|.+||+.+.... +++.+.+++.+.+|+++++. +++..+...++++.+.
T Consensus 349 ~~R~~Il~~~~~~~~l~~d~~l~~la~~t~G~~gadl~---~l~~~a~~~al~r~~~ 402 (733)
T TIGR01243 349 RARKEILKVHTRNMPLAEDVDLDKLAEVTHGFVGADLA---ALAKEAAMAALRRFIR 402 (733)
T ss_pred HHHHHHHHHHhcCCCCccccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHhh
Confidence 99999999777653 45677889999999999887 7777777777776655
No 38
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.89 E-value=5.1e-23 Score=180.05 Aligned_cols=130 Identities=26% Similarity=0.386 Sum_probs=112.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCC-ceEEEecCCCCccccCCC
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGK-MCCLFINDLDAGAGRMGG 238 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~-p~ILfIDEiDal~~~r~~ 238 (473)
|||+||||||||++|+.+|+.++.+++.++++++.+.+.++..+.++.+|+++. ... |+||||||+|.+.+..
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~~vl~iDe~d~l~~~~-- 74 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAK----KSAKPCVLFIDEIDKLFPKS-- 74 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHH----HTSTSEEEEEETGGGTSHHC--
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccccccccccccccccccccccc----ccccceeeeeccchhccccc--
Confidence 699999999999999999999999999999999999999999999999999987 666 9999999999998875
Q ss_pred CCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEecC
Q 011983 239 TTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP 306 (473)
Q Consensus 239 ~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P 306 (473)
........+.+.+.|+..+++ ......+++||+|||+++.++++|+| +||+..|++|
T Consensus 75 ~~~~~~~~~~~~~~L~~~l~~----------~~~~~~~~~vI~ttn~~~~i~~~l~~-~rf~~~i~~~ 131 (132)
T PF00004_consen 75 QPSSSSFEQRLLNQLLSLLDN----------PSSKNSRVIVIATTNSPDKIDPALLR-SRFDRRIEFP 131 (132)
T ss_dssp STSSSHHHHHHHHHHHHHHHT----------TTTTSSSEEEEEEESSGGGSCHHHHS-TTSEEEEEE-
T ss_pred ccccccccccccceeeecccc----------cccccccceeEEeeCChhhCCHhHHh-CCCcEEEEcC
Confidence 223455566777788887772 22334679999999999999999998 8999999865
No 39
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=1.4e-19 Score=187.28 Aligned_cols=194 Identities=18% Similarity=0.190 Sum_probs=134.7
Q ss_pred hhhccccCCCCChhhHHHHHHHH-HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCC
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHI-TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i-~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge 200 (473)
+|+.+..+..+..++++.+...+ -|.|.+.-|..=-+|.|||||||||||+++-|+|+.++..++.+..++.. .
T Consensus 199 tF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~-----~ 273 (457)
T KOG0743|consen 199 TFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVK-----L 273 (457)
T ss_pred CccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeecccc-----C
Confidence 36666655445555554443332 23344444555568999999999999999999999999999988877554 2
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchh-----hHHHHHHHHHhhcCCCcccCCCCcccCCCC
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVN-----NQMVNATLMNIADNPTNVQLPGMYNQEENP 275 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~-----~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~ 275 (473)
... ++.+... ...-+||+|+|||.-+.-++.......+ ......=|++ .+||.|..+. .
T Consensus 274 n~d-Lr~LL~~------t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLN--------fiDGlwSscg-~ 337 (457)
T KOG0743|consen 274 DSD-LRHLLLA------TPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLN--------FLDGLWSSCG-D 337 (457)
T ss_pred cHH-HHHHHHh------CCCCcEEEEeecccccccccccccccccccCCcceeehHHhhh--------hhccccccCC-C
Confidence 222 6666552 3456899999999886532211111111 1122233444 6779987665 4
Q ss_pred CceEEEecCCCCCCccccccCCCceEEEec--CCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcC
Q 011983 276 RVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 336 (473)
Q Consensus 276 ~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 336 (473)
.-+||.|||.++.|||||+||||||.+|++ -+.++-..+++.|+.-+ ..-.+++.++.++-
T Consensus 338 ERIivFTTNh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~~h~L~~eie~l~~~~ 402 (457)
T KOG0743|consen 338 ERIIVFTTNHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEEDHRLFDEIERLIEET 402 (457)
T ss_pred ceEEEEecCChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCCCcchhHHHHHHhhcC
Confidence 556889999999999999999999999994 78999999999999763 34456777777664
No 40
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.82 E-value=8.6e-20 Score=196.64 Aligned_cols=232 Identities=18% Similarity=0.244 Sum_probs=174.3
Q ss_pred ccccccccccccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCc
Q 011983 79 ISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPL 158 (473)
Q Consensus 79 ~~~~~~~i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~ 158 (473)
++...+.-+.-|.++|+|.+=||+.- +... + .+... -+-+..++|.-.+..+++..+++-..+.. ..+ -.
T Consensus 282 m~~~SaE~~ViRnYlDwll~lPW~~~--sk~~--~-Dl~~a---~~iLd~dHYGLekVKeRIlEyLAV~~l~~-~~k-Gp 351 (782)
T COG0466 282 MSPMSAEATVIRNYLDWLLDLPWGKR--SKDK--L-DLKKA---EKILDKDHYGLEKVKERILEYLAVQKLTK-KLK-GP 351 (782)
T ss_pred CCCCCchHHHHHHHHHHHHhCCCccc--cchh--h-hHHHH---HHHhcccccCchhHHHHHHHHHHHHHHhc-cCC-Cc
Confidence 44455566777999999999999633 2221 1 12111 23355677888888888877766554332 222 25
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
+++|+||||+|||+|++.||+.+|..|+.++.+.+.. .|+|.-...|-+...+| .....+++||||
T Consensus 352 ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka-----~~~NPv~LLDEI 426 (782)
T COG0466 352 ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKA-----GVKNPVFLLDEI 426 (782)
T ss_pred EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHh-----CCcCCeEEeech
Confidence 7899999999999999999999999999999877654 37887666677777777 556668899999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccC--CCCCceEEEecCCCCCCccccccCCCceEEEe-cC
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 306 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~--~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P 306 (473)
|++.....|... ++|++++|++++..+..+|... +.++|++|+|+|..+.||.+|+. ||+.+-. -.
T Consensus 427 DKm~ss~rGDPa---------SALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlD--RMEiI~lsgY 495 (782)
T COG0466 427 DKMGSSFRGDPA---------SALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLD--RMEVIRLSGY 495 (782)
T ss_pred hhccCCCCCChH---------HHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhc--ceeeeeecCC
Confidence 999876444332 7899999999999999998864 46899999999999999999999 9977655 48
Q ss_pred CHHHHHHHHHhhcCC-----C-------CCCHHHHHHHHhcC
Q 011983 307 TREDRIGVCSGIFRT-----D-------NVPKEDIVKLVDTF 336 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~-----~-------~v~~~~l~~l~~~~ 336 (473)
+.++..+|-+.|+-+ . .+..+.+..+...|
T Consensus 496 t~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~Y 537 (782)
T COG0466 496 TEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYY 537 (782)
T ss_pred ChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHH
Confidence 999999999988764 2 23445566666555
No 41
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=9.1e-19 Score=178.19 Aligned_cols=172 Identities=16% Similarity=0.249 Sum_probs=125.5
Q ss_pred ccCCCCChhhHHHHHHHHHHhhh-cCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHH
Q 011983 127 LDGLYIAPAFMDKVVVHITKNFL-NLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI 205 (473)
Q Consensus 127 ~~~~~i~~~~~d~~~~~i~k~~l-~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~i 205 (473)
.++..++|.+-.++ .+++..-- ...+-.+-+.||||||||||||++|+.||.+.|+.+-.|.++++. ..-.+.-..|
T Consensus 354 l~~ViL~psLe~Ri-e~lA~aTaNTK~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVA-PlG~qaVTki 431 (630)
T KOG0742|consen 354 LEGVILHPSLEKRI-EDLAIATANTKKHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVA-PLGAQAVTKI 431 (630)
T ss_pred cCCeecCHHHHHHH-HHHHHHhcccccccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCcc-ccchHHHHHH
Confidence 34555667665444 22222111 112334568999999999999999999999999999999998875 3333445689
Q ss_pred HHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhH-HHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC
Q 011983 206 RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQ-MVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 284 (473)
Q Consensus 206 r~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~-~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN 284 (473)
+++|++|. +..+.-+|||||.|+++..|.. +..+...+ -++++|.. .......++++++||
T Consensus 432 H~lFDWak---kS~rGLllFIDEADAFLceRnk-tymSEaqRsaLNAlLfR--------------TGdqSrdivLvlAtN 493 (630)
T KOG0742|consen 432 HKLFDWAK---KSRRGLLLFIDEADAFLCERNK-TYMSEAQRSALNALLFR--------------TGDQSRDIVLVLATN 493 (630)
T ss_pred HHHHHHHh---hcccceEEEehhhHHHHHHhch-hhhcHHHHHHHHHHHHH--------------hcccccceEEEeccC
Confidence 99999997 3456779999999999877653 33333333 34444432 124467788889999
Q ss_pred CCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC
Q 011983 285 DFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 320 (473)
Q Consensus 285 ~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~ 320 (473)
+|..||.++-. |+|..+. +|..++|..||..||.
T Consensus 494 rpgdlDsAV~D--Ride~veFpLPGeEERfkll~lYln 529 (630)
T KOG0742|consen 494 RPGDLDSAVND--RIDEVVEFPLPGEEERFKLLNLYLN 529 (630)
T ss_pred CccchhHHHHh--hhhheeecCCCChHHHHHHHHHHHH
Confidence 99999999999 9999998 6999999999986664
No 42
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.8e-18 Score=185.76 Aligned_cols=210 Identities=18% Similarity=0.220 Sum_probs=159.3
Q ss_pred cccccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcC
Q 011983 86 ITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGG 165 (473)
Q Consensus 86 i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GP 165 (473)
...-+.+.|+|-+=|||.-+.+.+ +.. |.-.-+..++|.-....+++..+++-..|+ +.-.-++++|+||
T Consensus 377 fnvtrNYLdwlt~LPWgk~S~En~----dl~----~Ak~iLdeDHYgm~dVKeRILEfiAV~kLr--gs~qGkIlCf~GP 446 (906)
T KOG2004|consen 377 FNVTRNYLDWLTSLPWGKSSTENL----DLA----RAKEILDEDHYGMEDVKERILEFIAVGKLR--GSVQGKILCFVGP 446 (906)
T ss_pred hhHHHHHHHHHHhCCCCCCChhhh----hHH----HHHHhhcccccchHHHHHHHHHHHHHHhhc--ccCCCcEEEEeCC
Confidence 334478999999999974333322 222 222446677888778888888887766543 2234578999999
Q ss_pred CCCcHHHHHHHHHHHhCCCcEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccC
Q 011983 166 KGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236 (473)
Q Consensus 166 PGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 236 (473)
||+|||++++.||+.+|..|+.++-+.+.. -|+|.....+-+-++.. .....+++|||||++...-
T Consensus 447 PGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYVGAMPGkiIq~LK~v-----~t~NPliLiDEvDKlG~g~ 521 (906)
T KOG2004|consen 447 PGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYVGAMPGKIIQCLKKV-----KTENPLILIDEVDKLGSGH 521 (906)
T ss_pred CCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeeeccCChHHHHHHHhh-----CCCCceEEeehhhhhCCCC
Confidence 999999999999999999999999876643 37777655555666655 4556688999999997432
Q ss_pred CCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccC--CCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHH
Q 011983 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIG 313 (473)
Q Consensus 237 ~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~--~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~ 313 (473)
.+. -.++|++++|++++..+-.+|... +.+.|++|||+|..+.||++|+. ||+.+-. =...++...
T Consensus 522 qGD---------PasALLElLDPEQNanFlDHYLdVp~DLSkVLFicTAN~idtIP~pLlD--RMEvIelsGYv~eEKv~ 590 (906)
T KOG2004|consen 522 QGD---------PASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTANVIDTIPPPLLD--RMEVIELSGYVAEEKVK 590 (906)
T ss_pred CCC---------hHHHHHHhcChhhccchhhhccccccchhheEEEEeccccccCChhhhh--hhheeeccCccHHHHHH
Confidence 222 237899999999999998888764 46899999999999999999999 9976544 267899999
Q ss_pred HHHhhcCC
Q 011983 314 VCSGIFRT 321 (473)
Q Consensus 314 Il~~~l~~ 321 (473)
|.+.|+-+
T Consensus 591 IA~~yLip 598 (906)
T KOG2004|consen 591 IAERYLIP 598 (906)
T ss_pred HHHHhhhh
Confidence 99988865
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=1.2e-19 Score=180.24 Aligned_cols=153 Identities=19% Similarity=0.358 Sum_probs=124.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC---------CcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceE
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCC 223 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~---------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~I 223 (473)
+.-.+.|||+||||||||+|||++|+++.+ .++.+++..|+++|++|+.+++.++|++..++++ ++...+
T Consensus 174 It~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEinshsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVf 253 (423)
T KOG0744|consen 174 ITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEINSHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVF 253 (423)
T ss_pred eeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEehhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEE
Confidence 445689999999999999999999999754 5688999999999999999999999999999998 566778
Q ss_pred EEecCCCCccccCCCC-Cc-cchh-hHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 224 LFINDLDAGAGRMGGT-TQ-YTVN-NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 224 LfIDEiDal~~~r~~~-~~-~~~~-~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
++|||+++++..|... +. .... -|.|++.|.++ |.. ...++|+|++|+|-.+.||-|+.. |-|
T Consensus 254 vLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQl---------Drl---K~~~NvliL~TSNl~~siD~AfVD--RAD 319 (423)
T KOG0744|consen 254 VLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQL---------DRL---KRYPNVLILATSNLTDSIDVAFVD--RAD 319 (423)
T ss_pred EEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHH---------HHh---ccCCCEEEEeccchHHHHHHHhhh--Hhh
Confidence 8999999997655321 11 1122 34555555443 323 557899999999999999999999 999
Q ss_pred EEEe--cCCHHHHHHHHHhhcC
Q 011983 301 KFYW--APTREDRIGVCSGIFR 320 (473)
Q Consensus 301 ~~i~--~P~~eeR~~Il~~~l~ 320 (473)
-..| .|+.+.|.+|++..+.
T Consensus 320 i~~yVG~Pt~~ai~~Ilkscie 341 (423)
T KOG0744|consen 320 IVFYVGPPTAEAIYEILKSCIE 341 (423)
T ss_pred heeecCCccHHHHHHHHHHHHH
Confidence 9988 5999999999986653
No 44
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.74 E-value=4.9e-17 Score=183.53 Aligned_cols=228 Identities=18% Similarity=0.264 Sum_probs=145.5
Q ss_pred cccccccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEE
Q 011983 84 QDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIW 163 (473)
Q Consensus 84 ~~i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~ 163 (473)
.+.+.-+.++|.+..-||..-+. +. ++ +....+.++. +.|.-+...+++..++....+. ...+ ..++|||
T Consensus 284 ~~~~~~~~yl~~~~~ip~~~~~~-~~---~~-~~~~~~~l~~---~~~G~~~~k~~i~~~~~~~~~~-~~~~-~~~lll~ 353 (775)
T TIGR00763 284 SEFTVTRNYLDWLTDLPWGKYSK-EN---LD-LKRAKEILDE---DHYGLKKVKERILEYLAVQKLR-GKMK-GPILCLV 353 (775)
T ss_pred chHHHHHHHHHHHHCCCCccccc-ch---hh-HHHHHHHhhh---hcCChHHHHHHHHHHHHHHHhh-cCCC-CceEEEE
Confidence 33344478999998888852111 11 11 1112222332 2333344444444433322221 1122 3479999
Q ss_pred cCCCCcHHHHHHHHHHHhCCCcEEecccccc---------cCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 164 GGKGQGKSFQCELVFAKMGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 164 GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
||||||||++|++||+.++.+|+.++.+.+. ..|+|.....+.+.|..+. ...| ||||||||++.+
T Consensus 354 GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~g~~~g~i~~~l~~~~----~~~~-villDEidk~~~ 428 (775)
T TIGR00763 354 GPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYVGAMPGRIIQGLKKAK----TKNP-LFLLDEIDKIGS 428 (775)
T ss_pred CCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCceeCCCCchHHHHHHHhC----cCCC-EEEEechhhcCC
Confidence 9999999999999999999999998765432 3577877777778887764 4444 899999999985
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc--CCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDR 311 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~--~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 311 (473)
...+ + ....|++++|+.++..+-..+.. ...+++++|+|||.++.|+++|++ ||+.+.+ .|+.+++
T Consensus 429 ~~~~----~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~TtN~~~~i~~~L~~--R~~vi~~~~~~~~e~ 497 (775)
T TIGR00763 429 SFRG----D-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATANSIDTIPRPLLD--RMEVIELSGYTEEEK 497 (775)
T ss_pred ccCC----C-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEecCCchhCCHHHhC--CeeEEecCCCCHHHH
Confidence 4221 1 23567787774333222212111 234789999999999999999999 9974333 4789999
Q ss_pred HHHHHhhcCC------------CCCCHHHHHHHHhcCC
Q 011983 312 IGVCSGIFRT------------DNVPKEDIVKLVDTFP 337 (473)
Q Consensus 312 ~~Il~~~l~~------------~~v~~~~l~~l~~~~s 337 (473)
.+|++.++.. -.++.+.+..++..|.
T Consensus 498 ~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 498 LEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYT 535 (775)
T ss_pred HHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcC
Confidence 9999876521 1356667777777654
No 45
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.73 E-value=2.2e-16 Score=156.39 Aligned_cols=151 Identities=19% Similarity=0.149 Sum_probs=110.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---C----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
..+..+|||||||||||++|+++|+.+ + .+++.++++++.+.|+|+++..++++|+.|. ++|||||
T Consensus 40 ~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~l~~~~~g~~~~~~~~~~~~a~-------~~VL~ID 112 (261)
T TIGR02881 40 KQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERADLVGEYIGHTAQKTREVIKKAL-------GGVLFID 112 (261)
T ss_pred CCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHHhhhhhccchHHHHHHHHHhcc-------CCEEEEe
Confidence 345689999999999999999999874 2 3788899999999999999999999998664 6899999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----CCCccccccCCCceEE
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRMEKF 302 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----~~Ld~aLlR~GRfd~~ 302 (473)
|+|.+.... +.. ..+....+|+..++ ....++.+|++++.. ..++|+|++ ||...
T Consensus 113 E~~~L~~~~----~~~-~~~~~i~~Ll~~~e-------------~~~~~~~vila~~~~~~~~~~~~~p~L~s--Rf~~~ 172 (261)
T TIGR02881 113 EAYSLARGG----EKD-FGKEAIDTLVKGME-------------DNRNEFVLILAGYSDEMDYFLSLNPGLRS--RFPIS 172 (261)
T ss_pred chhhhccCC----ccc-hHHHHHHHHHHHHh-------------ccCCCEEEEecCCcchhHHHHhcChHHHh--ccceE
Confidence 999986321 111 12334456666555 334556666665432 347889999 99887
Q ss_pred Eec--CCHHHHHHHHHhhcCCCC--CCHHHHHHH
Q 011983 303 YWA--PTREDRIGVCSGIFRTDN--VPKEDIVKL 332 (473)
Q Consensus 303 i~~--P~~eeR~~Il~~~l~~~~--v~~~~l~~l 332 (473)
+.+ ++.+++.+|++.++...+ ++.+.+..+
T Consensus 173 i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l 206 (261)
T TIGR02881 173 IDFPDYTVEELMEIAERMVKEREYKLTEEAKWKL 206 (261)
T ss_pred EEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHH
Confidence 775 578999999998887543 555544444
No 46
>CHL00181 cbbX CbbX; Provisional
Probab=99.72 E-value=9.5e-17 Score=161.46 Aligned_cols=152 Identities=14% Similarity=0.133 Sum_probs=113.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---C----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---G----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
.++..+||+||||||||++|+++|+.+ | -+++.++.+++.+.|+|+++..++.+|++|. ++|||||
T Consensus 57 ~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~l~~a~-------ggVLfID 129 (287)
T CHL00181 57 NPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDDLVGQYIGHTAPKTKEVLKKAM-------GGVLFID 129 (287)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHHHHHHHhccchHHHHHHHHHcc-------CCEEEEE
Confidence 345679999999999999999999974 2 2588999999999999998888888888654 6899999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCceEE
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKF 302 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRfd~~ 302 (473)
|+|.+...+.. .+ -...+...|+.+++ ....++.||++++... .++|+|+| ||+..
T Consensus 130 E~~~l~~~~~~---~~-~~~e~~~~L~~~me-------------~~~~~~~vI~ag~~~~~~~~~~~np~L~s--R~~~~ 190 (287)
T CHL00181 130 EAYYLYKPDNE---RD-YGSEAIEILLQVME-------------NQRDDLVVIFAGYKDRMDKFYESNPGLSS--RIANH 190 (287)
T ss_pred ccchhccCCCc---cc-hHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhcCHHHHH--hCCce
Confidence 99998654221 11 23456667777666 3346677888876422 34689999 99998
Q ss_pred Eec--CCHHHHHHHHHhhcCCC--CCCHHHHHHH
Q 011983 303 YWA--PTREDRIGVCSGIFRTD--NVPKEDIVKL 332 (473)
Q Consensus 303 i~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l 332 (473)
+.+ ++.+++.+|++.++... .++.+.+..+
T Consensus 191 i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L 224 (287)
T CHL00181 191 VDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKAL 224 (287)
T ss_pred EEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHH
Confidence 885 78999999999998753 3555544333
No 47
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.69 E-value=6.6e-16 Score=155.13 Aligned_cols=151 Identities=12% Similarity=0.114 Sum_probs=113.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC-------CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIND 228 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg-------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDE 228 (473)
+..++||+||||||||++|+++|+.+. -+|+.++++++.+.++|+++..++.+|++|. +++|||||
T Consensus 57 ~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l~~~~~g~~~~~~~~~~~~a~-------~gvL~iDE 129 (284)
T TIGR02880 57 PTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEILKRAM-------GGVLFIDE 129 (284)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHHhHhhcccchHHHHHHHHHcc-------CcEEEEec
Confidence 456899999999999999999998752 2688999999999999999888888888664 68999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC--CC---CCccccccCCCceEEE
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND--FS---TLYAPLIRDGRMEKFY 303 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~--~~---~Ld~aLlR~GRfd~~i 303 (473)
+|.+.+.+.. ..-...+...|+++++ ....++.||++++. .+ .++|+|.+ ||+..|
T Consensus 130 i~~L~~~~~~----~~~~~~~~~~Ll~~le-------------~~~~~~~vI~a~~~~~~~~~~~~np~L~s--R~~~~i 190 (284)
T TIGR02880 130 AYYLYRPDNE----RDYGQEAIEILLQVME-------------NQRDDLVVILAGYKDRMDSFFESNPGFSS--RVAHHV 190 (284)
T ss_pred hhhhccCCCc----cchHHHHHHHHHHHHh-------------cCCCCEEEEEeCCcHHHHHHHhhCHHHHh--hCCcEE
Confidence 9998644221 1123455567777666 33467788887753 23 24799999 999888
Q ss_pred ec--CCHHHHHHHHHhhcCCC--CCCHHHHHHH
Q 011983 304 WA--PTREDRIGVCSGIFRTD--NVPKEDIVKL 332 (473)
Q Consensus 304 ~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l 332 (473)
.+ ++.+++..|++.++... .++.+.+..+
T Consensus 191 ~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L 223 (284)
T TIGR02880 191 DFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAF 223 (284)
T ss_pred EeCCcCHHHHHHHHHHHHHHhccccCHHHHHHH
Confidence 85 67999999999998763 4555544443
No 48
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.68 E-value=9e-16 Score=172.72 Aligned_cols=247 Identities=18% Similarity=0.240 Sum_probs=164.8
Q ss_pred chhhhhhhhhhhcccccccccccccccccccccccccccccccCCccchhccchhhhhhhhhhhhccccCCCCChhhHHH
Q 011983 60 EYDEEKQTSQDRWAGLAYDISDDQQDITRGKGMVDTLFQAPMESGTHYAVMSSYDYISQGLRHLDNTLDGLYIAPAFMDK 139 (473)
Q Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~vd~lf~~~~~~g~~~~i~~~~~~~~~~~r~f~~~~~~~~i~~~~~d~ 139 (473)
|+.+....+.+|.+. ++......+.-+.++|+|+.=||+.-+.+.+ .+....+. +..++|.-.+..++
T Consensus 266 ~~~~~~~~e~~~~~~----~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~-----~~~~~~~~---l~~~~~g~~~vK~~ 333 (784)
T PRK10787 266 EAKEKAEAELQKLKM----MSPMSAEATVVRGYIDWMVQVPWNARSKVKK-----DLRQAQEI---LDTDHYGLERVKDR 333 (784)
T ss_pred HHHHHHHHHHHHHHh----CCCCCchHHHHHHHHHHHHhCCCCCCCcccc-----cHHHHHHH---hhhhccCHHHHHHH
Confidence 444455555555543 3334455566699999999999975443322 22223222 33445555666666
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc---------CCCCChHHHHHHHHH
Q 011983 140 VVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYR 210 (473)
Q Consensus 140 ~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~ 210 (473)
+..++...... ...+ ...++|+||||||||++++.+|+.++.+|+.++.+.... .|.|.....+.+.+.
T Consensus 334 i~~~l~~~~~~-~~~~-g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~ 411 (784)
T PRK10787 334 ILEYLAVQSRV-NKIK-GPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMA 411 (784)
T ss_pred HHHHHHHHHhc-ccCC-CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHH
Confidence 65544422211 1122 346999999999999999999999999999888765432 356665555555555
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc--CCCCCceEEEecCCCCC
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ--EENPRVPIIVTGNDFST 288 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~--~~~~~V~VIaTTN~~~~ 288 (473)
.+ .....||||||+|++.....+ .....|++++|+.++..+...|.. .+.++|++|+|+|.. .
T Consensus 412 ~~-----~~~~~villDEidk~~~~~~g---------~~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~ 476 (784)
T PRK10787 412 KV-----GVKNPLFLLDEIDKMSSDMRG---------DPASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-N 476 (784)
T ss_pred hc-----CCCCCEEEEEChhhcccccCC---------CHHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-C
Confidence 44 334458999999998754221 134688999987777776655543 356899999999998 5
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCC------------CCCCHHHHHHHHhcCC
Q 011983 289 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFP 337 (473)
Q Consensus 289 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~------------~~v~~~~l~~l~~~~s 337 (473)
|++||++ ||+.+-+ -++.++..+|++.++.. -.++.+.+..++++|+
T Consensus 477 i~~aLl~--R~~ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt 536 (784)
T PRK10787 477 IPAPLLD--RMEVIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYT 536 (784)
T ss_pred CCHHHhc--ceeeeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCC
Confidence 9999999 9976555 47899999999877742 1355666777777664
No 49
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=5.4e-16 Score=166.63 Aligned_cols=191 Identities=17% Similarity=0.194 Sum_probs=147.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
-.+..|||+||+|||||.|+++++++.. +++..++|+.+...-.....+.++.+|.+|. +++|+||++|++|
T Consensus 429 ~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l~~vfse~~----~~~PSiIvLDdld 504 (952)
T KOG0735|consen 429 FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFLNNVFSEAL----WYAPSIIVLDDLD 504 (952)
T ss_pred cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHHHHHHHHHH----hhCCcEEEEcchh
Confidence 3456899999999999999999999954 5777899998885555455566777777777 9999999999999
Q ss_pred Ccccc-CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEec--CC
Q 011983 231 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA--PT 307 (473)
Q Consensus 231 al~~~-r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~--P~ 307 (473)
.+++. ...+++..+..+++..+|.++.+ ........+.+|+|.+....|+|-|..+++|+..+.+ |+
T Consensus 505 ~l~~~s~~e~~q~~~~~~rla~flnqvi~----------~y~~~~~~ia~Iat~qe~qtl~~~L~s~~~Fq~~~~L~ap~ 574 (952)
T KOG0735|consen 505 CLASASSNENGQDGVVSERLAAFLNQVIK----------IYLKRNRKIAVIATGQELQTLNPLLVSPLLFQIVIALPAPA 574 (952)
T ss_pred hhhccCcccCCcchHHHHHHHHHHHHHHH----------HHHccCcEEEEEEechhhhhcChhhcCccceEEEEecCCcc
Confidence 99983 33345666677888888877666 2224456689999999999999999999999999884 89
Q ss_pred HHHHHHHHHhhcCCCC--C---CHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 308 REDRIGVCSGIFRTDN--V---PKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~~--v---~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
..+|.+||+.++.+.. . +++-+...+++|...|+. -+..|++.+++++.+..
T Consensus 575 ~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~---ifVeRai~~a~leris~ 631 (952)
T KOG0735|consen 575 VTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLV---IFVERAIHEAFLERISN 631 (952)
T ss_pred hhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHH---HHHHHHHHHHHHHHhcc
Confidence 9999999998887632 1 223466678888888877 55566666666444443
No 50
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.62 E-value=1e-14 Score=158.14 Aligned_cols=178 Identities=16% Similarity=0.167 Sum_probs=140.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
++.-..+||+|+||||||++++++|+++|++++.+++.++.+...+.++..+...|.+|+ ...|+||||-++|.+.
T Consensus 428 ~~~~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~----~~~pavifl~~~dvl~ 503 (953)
T KOG0736|consen 428 LTLNPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRAR----RCSPAVLFLRNLDVLG 503 (953)
T ss_pred cccceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHh----hcCceEEEEeccceee
Confidence 345678999999999999999999999999999999999999999999999999999998 9999999999999987
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHHHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTREDRIG 313 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~ 313 (473)
....+ .+..++...+..++. .+- .....++++||+||+..+.|++.+++..+|+..+..|+.++|.+
T Consensus 504 id~dg-----ged~rl~~~i~~~ls------~e~--~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~ 570 (953)
T KOG0736|consen 504 IDQDG-----GEDARLLKVIRHLLS------NED--FKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLE 570 (953)
T ss_pred ecCCC-----chhHHHHHHHHHHHh------ccc--ccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHH
Confidence 44332 333444444444333 111 12456889999999999999999999777777777899999999
Q ss_pred HHHhhcCCCCCCHH----HHHHHHhcCCCCchhhHHHHHHHh
Q 011983 314 VCSGIFRTDNVPKE----DIVKLVDTFPGQSIDFFGALRARV 351 (473)
Q Consensus 314 Il~~~l~~~~v~~~----~l~~l~~~~sga~l~f~gal~~~~ 351 (473)
||++|+....++.+ .++..+.+|+-.++. ++..+.
T Consensus 571 iLq~y~~~~~~n~~v~~k~~a~~t~gfs~~~L~---~l~~~~ 609 (953)
T KOG0736|consen 571 ILQWYLNHLPLNQDVNLKQLARKTSGFSFGDLE---ALVAHS 609 (953)
T ss_pred HHHHHHhccccchHHHHHHHHHhcCCCCHHHHH---HHhcCc
Confidence 99999987666644 555556666655555 555544
No 51
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.60 E-value=3.2e-15 Score=168.00 Aligned_cols=157 Identities=17% Similarity=0.154 Sum_probs=117.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
...+++||||||||||++++++|+.+ +..++.++.+.+. .+|.|+.+..++++|+++. +..++|
T Consensus 202 ~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~----~~~~~I 277 (731)
T TIGR02639 202 KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIE----KEPNAI 277 (731)
T ss_pred CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHHHHhhhccccchHHHHHHHHHHHHh----ccCCeE
Confidence 45578999999999999999999997 7788899988887 4789999999999999886 678999
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----CCCccccccCCC
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 298 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----~~Ld~aLlR~GR 298 (473)
|||||+|.+.+.+.. ...+. .+.+.|...+. ...+.+|++||.. ..+|++|.| |
T Consensus 278 LfiDEih~l~~~g~~-~~~~~---~~~~~L~~~l~---------------~g~i~~IgaTt~~e~~~~~~~d~al~r--R 336 (731)
T TIGR02639 278 LFIDEIHTIVGAGAT-SGGSM---DASNLLKPALS---------------SGKLRCIGSTTYEEYKNHFEKDRALSR--R 336 (731)
T ss_pred EEEecHHHHhccCCC-CCccH---HHHHHHHHHHh---------------CCCeEEEEecCHHHHHHHhhhhHHHHH--h
Confidence 999999999875321 11111 23334444333 4678899988863 357999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcCC------CCCCHHH---HHHHHhcCC
Q 011983 299 MEKFYW-APTREDRIGVCSGIFRT------DNVPKED---IVKLVDTFP 337 (473)
Q Consensus 299 fd~~i~-~P~~eeR~~Il~~~l~~------~~v~~~~---l~~l~~~~s 337 (473)
|..+.. .|+.+++.+|++.+... -.++.+. ++.++.+|-
T Consensus 337 f~~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi 385 (731)
T TIGR02639 337 FQKIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYI 385 (731)
T ss_pred CceEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhccc
Confidence 986444 69999999999955432 2456554 445555553
No 52
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.56 E-value=6e-14 Score=135.16 Aligned_cols=154 Identities=14% Similarity=0.136 Sum_probs=95.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.....+|||||||+|||+||+.||++++.+|...+++.+.. ...+..++.. -....|||||||+.+-.
T Consensus 48 ~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k------~~dl~~il~~------l~~~~ILFIDEIHRlnk 115 (233)
T PF05496_consen 48 EALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEK------AGDLAAILTN------LKEGDILFIDEIHRLNK 115 (233)
T ss_dssp S---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--S------CHHHHHHHHT--------TT-EEEECTCCC--H
T ss_pred CCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhh------HHHHHHHHHh------cCCCcEEEEechhhccH
Confidence 45678999999999999999999999999999888765431 1223333331 23577999999997632
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCc-----ccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY-----NQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~-----~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
.+...|+..+++.+-.-+=|.- ..-..++-.+|+||.+...|.++|+. ||-.... ..+
T Consensus 116 -------------~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~ls~pLrd--RFgi~~~l~~Y~ 180 (233)
T PF05496_consen 116 -------------AQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLLSSPLRD--RFGIVLRLEFYS 180 (233)
T ss_dssp -------------HHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCTSHCCCT--TSSEEEE----T
T ss_pred -------------HHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeeccccccchhHHh--hcceecchhcCC
Confidence 3456677766654321111110 00123556799999999999999999 8887665 689
Q ss_pred HHHHHHHHHhhcCCC--CCCHHHHHHHHhc
Q 011983 308 REDRIGVCSGIFRTD--NVPKEDIVKLVDT 335 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~--~v~~~~l~~l~~~ 335 (473)
.++...|++...... +++.+....++..
T Consensus 181 ~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~r 210 (233)
T PF05496_consen 181 EEELAKIVKRSARILNIEIDEDAAEEIARR 210 (233)
T ss_dssp HHHHHHHHHHCCHCTT-EE-HHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHh
Confidence 999999998665554 4455555555544
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.55 E-value=1.8e-13 Score=140.24 Aligned_cols=126 Identities=20% Similarity=0.191 Sum_probs=99.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.....++||||||||||++|++||+..+.+|..+|+..- .-+.+|+++++|+.....++..|||||||+.+-.
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~-------gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfnK 118 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTS-------GVKDLREIIEEARKNRLLGRRTILFLDEIHRFNK 118 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccc-------cHHHHHHHHHHHHHHHhcCCceEEEEehhhhcCh
Confidence 345679999999999999999999999999999997632 2578999999998666677889999999996532
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDR 311 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 311 (473)
. .+.+|+-.++ ...|++|+|| |..-.|.+||++ |.-.+.. ..+.++.
T Consensus 119 ~-------------QQD~lLp~vE---------------~G~iilIGATTENPsF~ln~ALlS--R~~vf~lk~L~~~di 168 (436)
T COG2256 119 A-------------QQDALLPHVE---------------NGTIILIGATTENPSFELNPALLS--RARVFELKPLSSEDI 168 (436)
T ss_pred h-------------hhhhhhhhhc---------------CCeEEEEeccCCCCCeeecHHHhh--hhheeeeecCCHHHH
Confidence 1 2255666554 5677888744 667789999999 7655555 4688888
Q ss_pred HHHHHh
Q 011983 312 IGVCSG 317 (473)
Q Consensus 312 ~~Il~~ 317 (473)
..+++.
T Consensus 169 ~~~l~r 174 (436)
T COG2256 169 KKLLKR 174 (436)
T ss_pred HHHHHH
Confidence 888886
No 54
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.54 E-value=7.2e-14 Score=150.38 Aligned_cols=186 Identities=22% Similarity=0.254 Sum_probs=150.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+..+|++++++||||||||++++++|+. +..++.+++.+..+++.|+.+..++.+|..+. ...|+++++||+|.
T Consensus 13 ~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~ii~~d~~~~ 87 (494)
T COG0464 13 LGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAE----KLAPSIIFIDEIDA 87 (494)
T ss_pred hCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHH----HhCCCeEeechhhh
Confidence 36789999999999999999999999999 87778899999999999999999999999998 88899999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+.+.+.. ....+.. .+...|..+++ +. .... +.+++.||++..++++++++|||+..+. .|+..
T Consensus 88 ~~~~~~~-~~~~~~~-~v~~~l~~~~d--------~~---~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 153 (494)
T COG0464 88 LAPKRSS-DQGEVER-RVVAQLLALMD--------GL---KRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEA 153 (494)
T ss_pred cccCccc-cccchhh-HHHHHHHHhcc--------cc---cCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHH
Confidence 9988764 3333333 44455555444 33 2345 8888899999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKW 359 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~ 359 (473)
.|.+|+...... .+.+.+.++..+.++.++++. +++..+...++++.
T Consensus 154 ~~~ei~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~---~l~~~~~~~~~~r~ 204 (494)
T COG0464 154 GRLEILQIHTRLMFLGPPGTGKTLAARTVGKSGADLG---ALAKEAALRELRRA 204 (494)
T ss_pred HHHHHHHHHHhcCCCcccccHHHHHHhcCCccHHHHH---HHHHHHHHHHHHhh
Confidence 998888855543 356677888888888888887 56655555555554
No 55
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.52 E-value=5.6e-14 Score=157.43 Aligned_cols=140 Identities=15% Similarity=0.178 Sum_probs=105.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
.+..+||+||||||||++|+.+|... +..++.++.+.+. .+|.|+.+..++.+|+.+. ...++|
T Consensus 206 ~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~----~~~~~I 281 (758)
T PRK11034 206 RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNSI 281 (758)
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHHHhcccchhhhHHHHHHHHHHHHH----hcCCCE
Confidence 34567899999999999999999874 4556666666655 4678999999999998776 678999
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCC
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGR 298 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GR 298 (473)
|||||+|.+++.+... . ....+.+.|..++. ...+.||++||..+ .+|++|.| |
T Consensus 282 LfIDEIh~L~g~g~~~-~---g~~d~~nlLkp~L~---------------~g~i~vIgATt~~E~~~~~~~D~AL~r--R 340 (758)
T PRK11034 282 LFIDEIHTIIGAGAAS-G---GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR--R 340 (758)
T ss_pred EEeccHHHHhccCCCC-C---cHHHHHHHHHHHHh---------------CCCeEEEecCChHHHHHHhhccHHHHh--h
Confidence 9999999998764311 1 11223444554444 57789999998764 57999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcC
Q 011983 299 MEKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 299 fd~~i~-~P~~eeR~~Il~~~l~ 320 (473)
|+.+.. .|+.+++..||+.+..
T Consensus 341 Fq~I~v~ePs~~~~~~IL~~~~~ 363 (758)
T PRK11034 341 FQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_pred CcEEEeCCCCHHHHHHHHHHHHH
Confidence 976444 6999999999996543
No 56
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.49 E-value=1.5e-13 Score=156.41 Aligned_cols=156 Identities=18% Similarity=0.163 Sum_probs=112.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEeccccccc--CCCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s--~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
..+++|+||||||||++|+.+|+.+ +.+++.++.+.+.. .+.|+.+..++++|+++. +...++||
T Consensus 208 ~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~---~~~~~~IL 284 (852)
T TIGR03345 208 QNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVK---ASPQPIIL 284 (852)
T ss_pred cCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhhhhcccccchHHHHHHHHHHHHHH---hcCCCeEE
Confidence 3467899999999999999999986 24567777777663 688999999999999885 13578999
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----CCCccccccCCCc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGRM 299 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----~~Ld~aLlR~GRf 299 (473)
||||++.+.+.++...+.+ ..+.|...+. .+.+.+|+||+.. -.+|+||+| ||
T Consensus 285 fIDEih~l~~~g~~~~~~d-----~~n~Lkp~l~---------------~G~l~~IgaTT~~e~~~~~~~d~AL~r--Rf 342 (852)
T TIGR03345 285 FIDEAHTLIGAGGQAGQGD-----AANLLKPALA---------------RGELRTIAATTWAEYKKYFEKDPALTR--RF 342 (852)
T ss_pred EEeChHHhccCCCcccccc-----HHHHhhHHhh---------------CCCeEEEEecCHHHHhhhhhccHHHHH--hC
Confidence 9999999987643211211 2233433332 5678899988753 458999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCC----C--CCCHH---HHHHHHhcCC
Q 011983 300 EKFYW-APTREDRIGVCSGIFRT----D--NVPKE---DIVKLVDTFP 337 (473)
Q Consensus 300 d~~i~-~P~~eeR~~Il~~~l~~----~--~v~~~---~l~~l~~~~s 337 (473)
..+.. .|+.+++..||+.+... . .++.+ .++.++++|.
T Consensus 343 ~~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi 390 (852)
T TIGR03345 343 QVVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYI 390 (852)
T ss_pred eEEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHccccc
Confidence 75444 59999999997755432 2 34555 4456666654
No 57
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.49 E-value=4.6e-13 Score=139.66 Aligned_cols=156 Identities=19% Similarity=0.221 Sum_probs=120.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCCCC-ChHHHHHHHHHHHHHHHH---------------
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAG-EPAKLIRQRYREAADIIK--------------- 217 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~~G-e~~~~ir~~f~~A~~~~~--------------- 217 (473)
-.|+++||+||||||||++|+++|+.++.+|+.++++.+. .+|+| +.+..++.+|..|...++
T Consensus 45 ~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~a 124 (441)
T TIGR00390 45 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESMVRDLTDAAVKLVKEEAIEKVRDRAEELA 124 (441)
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 4679999999999999999999999999999999999886 48999 678888888888721000
Q ss_pred --------------------------------------------------------------------------------
Q 011983 218 -------------------------------------------------------------------------------- 217 (473)
Q Consensus 218 -------------------------------------------------------------------------------- 217 (473)
T Consensus 125 e~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (441)
T TIGR00390 125 EERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEIDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNL 204 (441)
T ss_pred HHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEEeecCCCCCccccCCCcchhHHHhhHHHHHHhh
Confidence
Q ss_pred ----------------------------------------cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 218 ----------------------------------------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 218 ----------------------------------------~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
..+..||||||||+++.+.. ....++...-|++.|+.|+
T Consensus 205 ~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVfiDEiDKIa~~~~-~~~~DvS~eGVQ~~LLkil 283 (441)
T TIGR00390 205 GGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIFIDEIDKIAKKGE-SSGADVSREGVQRDLLPIV 283 (441)
T ss_pred cCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEchhhhcccCC-CCCCCCCccchhccccccc
Confidence 12446999999999997643 2234666778999999988
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecC----CCCCCccccccCCCceEEEec--CCHHHHHHHHH
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 316 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN----~~~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~ 316 (473)
+ .+.|.+. +......++++|+++- .|+.|=|.|.= ||-..+.+ ++.++-..||.
T Consensus 284 E-Gt~v~~k--~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~edL~rILt 343 (441)
T TIGR00390 284 E-GSTVNTK--YGMVKTDHILFIAAGAFQLAKPSDLIPELQG--RFPIRVELQALTTDDFERILT 343 (441)
T ss_pred c-Cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 7 4545443 3346789999999763 56667677765 99998884 79999888873
No 58
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.49 E-value=4.6e-13 Score=139.73 Aligned_cols=155 Identities=21% Similarity=0.257 Sum_probs=121.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc-CCCC-ChHHHHHHHHHHHHHH------------------
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAG-EPAKLIRQRYREAADI------------------ 215 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s-~~~G-e~~~~ir~~f~~A~~~------------------ 215 (473)
.|.++||+||||||||++|+++|+.++.+|+.++++++.. +|+| ..+..++.+|..|..+
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e 128 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRDVESIIRDLVEIAVKMVREEKREKVREKAEEAAE 128 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999998875 7999 5678889898888200
Q ss_pred --------------------------------------------------------------------------------
Q 011983 216 -------------------------------------------------------------------------------- 215 (473)
Q Consensus 216 -------------------------------------------------------------------------------- 215 (473)
T Consensus 129 ~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (443)
T PRK05201 129 ERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEIEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGP 208 (443)
T ss_pred HHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEEEecCCCCcccCCCCcchhHHHHHHHHHHHhhCC
Confidence
Q ss_pred -----------------------------------HH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcC
Q 011983 216 -----------------------------------IK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADN 259 (473)
Q Consensus 216 -----------------------------------~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~ 259 (473)
++ .....||||||||+++.+.++ ...++...-|++.|+.+++
T Consensus 209 ~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfiDEiDKIa~~~~~-~~~DvS~eGVQ~~LLki~E- 286 (443)
T PRK05201 209 KKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFIDEIDKIAARGGS-SGPDVSREGVQRDLLPLVE- 286 (443)
T ss_pred CCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEEEcchhhcccCCC-CCCCCCccchhcccccccc-
Confidence 00 124469999999999976432 2346667789999999887
Q ss_pred CCcccCCCCcccCCCCCceEEEec----CCCCCCccccccCCCceEEEec--CCHHHHHHHHH
Q 011983 260 PTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIRDGRMEKFYWA--PTREDRIGVCS 316 (473)
Q Consensus 260 ~~~v~l~g~~~~~~~~~V~VIaTT----N~~~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~ 316 (473)
.+.|++. +......++++||+. ..|+.|-|.|.- ||-..+.+ ++.++-..||.
T Consensus 287 G~~v~~k--~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~G--R~Pi~v~L~~L~~~dL~~ILt 345 (443)
T PRK05201 287 GSTVSTK--YGMVKTDHILFIASGAFHVSKPSDLIPELQG--RFPIRVELDALTEEDFVRILT 345 (443)
T ss_pred cceeeec--ceeEECCceeEEecCCcCCCChhhccHHHhC--ccceEEECCCCCHHHHHHHhc
Confidence 4545543 334668999999966 456677788876 99998884 78999888874
No 59
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.48 E-value=2.3e-13 Score=154.81 Aligned_cols=158 Identities=17% Similarity=0.179 Sum_probs=116.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
+.+.+++|+||||||||++|+.+|..+ +..++.++.+.+. .+|.|+.+..++.+|+++. ...++
T Consensus 198 ~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~----~~~~~ 273 (821)
T CHL00095 198 RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQ----ENNNI 273 (821)
T ss_pred cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHH----hcCCe
Confidence 455688999999999999999999986 4788899988876 4789999999999999886 67899
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 297 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~G 297 (473)
||||||++.+++.... .... .+.+.|...+. .+.+.+|++|+..+ ..|++|.|
T Consensus 274 ILfiDEih~l~~~g~~--~g~~---~~a~lLkp~l~---------------rg~l~~IgaTt~~ey~~~ie~D~aL~r-- 331 (821)
T CHL00095 274 ILVIDEVHTLIGAGAA--EGAI---DAANILKPALA---------------RGELQCIGATTLDEYRKHIEKDPALER-- 331 (821)
T ss_pred EEEEecHHHHhcCCCC--CCcc---cHHHHhHHHHh---------------CCCcEEEEeCCHHHHHHHHhcCHHHHh--
Confidence 9999999999876431 1111 22333433222 56788999888653 57999999
Q ss_pred CceEEEe-cCCHHHHHHHHHhhcC------CCCCCHH---HHHHHHhcCCC
Q 011983 298 RMEKFYW-APTREDRIGVCSGIFR------TDNVPKE---DIVKLVDTFPG 338 (473)
Q Consensus 298 Rfd~~i~-~P~~eeR~~Il~~~l~------~~~v~~~---~l~~l~~~~sg 338 (473)
||..+.. .|+.++...|++.+.. .-.++.+ .+..++.+|-+
T Consensus 332 Rf~~I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~ 382 (821)
T CHL00095 332 RFQPVYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIA 382 (821)
T ss_pred cceEEecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCc
Confidence 9987544 5999999999874432 1235555 44556666543
No 60
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.48 E-value=1.1e-13 Score=157.57 Aligned_cols=139 Identities=20% Similarity=0.230 Sum_probs=107.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
...++|+||||||||++|+.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|++.. +...++||
T Consensus 199 ~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~---~~~~~~IL 275 (857)
T PRK10865 199 KNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNVIL 275 (857)
T ss_pred cCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehhhhhhccchhhhhHHHHHHHHHHHH---HcCCCeEE
Confidence 3468899999999999999999997 7788888888776 4688999999999998754 14678999
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 299 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRf 299 (473)
||||++.+.+.... ..... ....|...+ ..+.+.+|+||+..+ .+|++|.| ||
T Consensus 276 fIDEih~l~~~~~~--~~~~d---~~~~lkp~l---------------~~g~l~~IgaTt~~e~r~~~~~d~al~r--Rf 333 (857)
T PRK10865 276 FIDELHTMVGAGKA--DGAMD---AGNMLKPAL---------------ARGELHCVGATTLDEYRQYIEKDAALER--RF 333 (857)
T ss_pred EEecHHHhccCCCC--ccchh---HHHHhcchh---------------hcCCCeEEEcCCCHHHHHHhhhcHHHHh--hC
Confidence 99999999866432 11111 222232222 257889999998776 48999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcC
Q 011983 300 EKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 300 d~~i~-~P~~eeR~~Il~~~l~ 320 (473)
+.++. .|+.+++..|++.+..
T Consensus 334 ~~i~v~eP~~~~~~~iL~~l~~ 355 (857)
T PRK10865 334 QKVFVAEPSVEDTIAILRGLKE 355 (857)
T ss_pred CEEEeCCCCHHHHHHHHHHHhh
Confidence 87655 6999999999987653
No 61
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.47 E-value=3.8e-13 Score=137.56 Aligned_cols=157 Identities=17% Similarity=0.164 Sum_probs=103.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.++..+|||||||||||++|+++|++++..+..++++.+.. ...+..++.. ...++||||||+|.+..
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~------~~~l~~~l~~------l~~~~vl~IDEi~~l~~ 116 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 116 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC------hHHHHHHHHh------cccCCEEEEecHhhcch
Confidence 56778999999999999999999999999887776654321 2223333332 24588999999998743
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcc----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~----~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
. +...|...+++.. .+.++.... ....+++.+|++||++..++++|++ ||...+. .|+
T Consensus 117 ~-------------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~~l~~~L~s--Rf~~~~~l~~~~ 181 (328)
T PRK00080 117 V-------------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAGLLTSPLRD--RFGIVQRLEFYT 181 (328)
T ss_pred H-------------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcccCCHHHHH--hcCeeeecCCCC
Confidence 2 1122223222110 011111000 0122457789999999999999999 8876666 589
Q ss_pred HHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCC
Q 011983 308 REDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 338 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sg 338 (473)
.+++.+|++...... .++.+.+..++....|
T Consensus 182 ~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G 214 (328)
T PRK00080 182 VEELEKIVKRSARILGVEIDEEGALEIARRSRG 214 (328)
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC
Confidence 999999999777654 4556666666665444
No 62
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.47 E-value=4.5e-13 Score=152.96 Aligned_cols=157 Identities=18% Similarity=0.181 Sum_probs=112.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
....++|+||||||||++++.+|..+ +.+++.++.+.+. .+|.|+.++.++.+|+++. +...++|
T Consensus 193 ~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~---~~~~~~I 269 (852)
T TIGR03346 193 TKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMGALIAGAKYRGEFEERLKAVLNEVT---KSEGQII 269 (852)
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHH---hcCCCeE
Confidence 34567899999999999999999985 6778888877775 4688999999999999774 1346999
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----CCCccccccCCC
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDGR 298 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----~~Ld~aLlR~GR 298 (473)
|||||++.+.+.+.. +.. ..+.+.|...+ ....+.+|++|+.. -.+|++|.| |
T Consensus 270 LfIDEih~l~~~g~~--~~~---~d~~~~Lk~~l---------------~~g~i~~IgaTt~~e~r~~~~~d~al~r--R 327 (852)
T TIGR03346 270 LFIDELHTLVGAGKA--EGA---MDAGNMLKPAL---------------ARGELHCIGATTLDEYRKYIEKDAALER--R 327 (852)
T ss_pred EEeccHHHhhcCCCC--cch---hHHHHHhchhh---------------hcCceEEEEeCcHHHHHHHhhcCHHHHh--c
Confidence 999999999864321 111 11223333222 25678999988866 358999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcCC----CC--CCHH---HHHHHHhcCC
Q 011983 299 MEKFYW-APTREDRIGVCSGIFRT----DN--VPKE---DIVKLVDTFP 337 (473)
Q Consensus 299 fd~~i~-~P~~eeR~~Il~~~l~~----~~--v~~~---~l~~l~~~~s 337 (473)
|..++. .|+.+++..|++.+... .+ +..+ ..+.++.+|-
T Consensus 328 f~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi 376 (852)
T TIGR03346 328 FQPVFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYI 376 (852)
T ss_pred CCEEEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccc
Confidence 987555 69999999999866432 22 3444 3455666654
No 63
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.47 E-value=7.4e-13 Score=139.38 Aligned_cols=109 Identities=17% Similarity=0.254 Sum_probs=80.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCCCCChH-HHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPA-KLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~~Ge~~-~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
....+||+||||||||++|+++|+.++.+|+.++++.+. .+|+|+.. ..+..+++.+...++...++||||||||++.
T Consensus 107 ~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~ 186 (412)
T PRK05342 107 QKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIA 186 (412)
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccchHHHHHHHHHHhccccHHHcCCcEEEEechhhhc
Confidence 347899999999999999999999999999999998875 47888754 4455555544333446678999999999998
Q ss_pred ccCCCC-CccchhhHHHHHHHHHhhcCCCcccC
Q 011983 234 GRMGGT-TQYTVNNQMVNATLMNIADNPTNVQL 265 (473)
Q Consensus 234 ~~r~~~-~~~~~~~~~v~~~Ll~lld~~~~v~l 265 (473)
.+..+. ...++....+++.|+++++ .+.+.+
T Consensus 187 ~~~~~~~~~~d~s~~~vQ~~LL~~Le-g~~~~v 218 (412)
T PRK05342 187 RKSENPSITRDVSGEGVQQALLKILE-GTVASV 218 (412)
T ss_pred cccCCCCcCCCcccHHHHHHHHHHHh-cCeEEe
Confidence 663211 1223444568889999997 444433
No 64
>PRK04195 replication factor C large subunit; Provisional
Probab=99.47 E-value=7.4e-13 Score=142.32 Aligned_cols=151 Identities=18% Similarity=0.210 Sum_probs=106.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-c-CCceEEEecCCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K-GKMCCLFINDLDAG 232 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~-~~p~ILfIDEiDal 232 (473)
.+++.+|||||||||||++|+++|++++.+++.+++++..+ ...++.+...+..... . ..+.||+|||+|.+
T Consensus 37 ~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~------~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L 110 (482)
T PRK04195 37 KPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRT------ADVIERVAGEAATSGSLFGARRKLILLDEVDGI 110 (482)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccccc------HHHHHHHHHHhhccCcccCCCCeEEEEecCccc
Confidence 45889999999999999999999999999999999876432 2345555554432111 1 26789999999988
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEe-cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYW-APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~-aLlR~GRfd~~i~-~P~~ee 310 (473)
..... +.....|+.+++ ..+.+||+++|++..+.+ .|++ |+..+.+ .|+..+
T Consensus 111 ~~~~d---------~~~~~aL~~~l~---------------~~~~~iIli~n~~~~~~~k~Lrs--r~~~I~f~~~~~~~ 164 (482)
T PRK04195 111 HGNED---------RGGARAILELIK---------------KAKQPIILTANDPYDPSLRELRN--ACLMIEFKRLSTRS 164 (482)
T ss_pred ccccc---------hhHHHHHHHHHH---------------cCCCCEEEeccCccccchhhHhc--cceEEEecCCCHHH
Confidence 65311 112244555444 345678999999998887 6666 5544444 589999
Q ss_pred HHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 311 RIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
...+++.++...+ ++.+.+..++....
T Consensus 165 i~~~L~~i~~~egi~i~~eaL~~Ia~~s~ 193 (482)
T PRK04195 165 IVPVLKRICRKEGIECDDEALKEIAERSG 193 (482)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 9999998886644 56667777776643
No 65
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.47 E-value=1.5e-12 Score=131.81 Aligned_cols=149 Identities=17% Similarity=0.278 Sum_probs=102.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecCCCCcc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 233 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 233 (473)
+.|..+|||||||+|||++|+++|++.+.+++.+++++ . . ...++........... ...+.||+|||+|.+.
T Consensus 41 ~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~-----~-~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~ 113 (316)
T PHA02544 41 RIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-C-----R-IDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLG 113 (316)
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-c-----c-HHHHHHHHHHHHHhhcccCCCeEEEEECccccc
Confidence 56788888999999999999999999999999998875 1 1 2233332222211111 2468899999999762
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 312 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 312 (473)
.. ..+..|..+++ ....++.+|+|||.++.++++|++ |+..+.+ .|+.+++.
T Consensus 114 ~~------------~~~~~L~~~le-------------~~~~~~~~Ilt~n~~~~l~~~l~s--R~~~i~~~~p~~~~~~ 166 (316)
T PHA02544 114 LA------------DAQRHLRSFME-------------AYSKNCSFIITANNKNGIIEPLRS--RCRVIDFGVPTKEEQI 166 (316)
T ss_pred CH------------HHHHHHHHHHH-------------hcCCCceEEEEcCChhhchHHHHh--hceEEEeCCCCHHHHH
Confidence 21 12244555444 335677899999999999999999 8876665 79999998
Q ss_pred HHHHhhc-------CC--CCCCHHHHHHHHhcCC
Q 011983 313 GVCSGIF-------RT--DNVPKEDIVKLVDTFP 337 (473)
Q Consensus 313 ~Il~~~l-------~~--~~v~~~~l~~l~~~~s 337 (473)
.+++.++ .+ ..++.+.+..++....
T Consensus 167 ~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~ 200 (316)
T PHA02544 167 EMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNF 200 (316)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcC
Confidence 7766432 22 2455556666665543
No 66
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.46 E-value=1.4e-12 Score=138.64 Aligned_cols=145 Identities=14% Similarity=0.224 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||||||++|+.+|+.++.. ++.+++.. ......+|++.+
T Consensus 38 ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~~i~~g~~~dviEIdaas------~~gVd~IReL~e 111 (484)
T PRK14956 38 KIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCLEITKGISSDVLEIDAAS------NRGIENIRELRD 111 (484)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHHHHHccCCccceeechhh------cccHHHHHHHHH
Confidence 567789999999999999999999997652 22222211 111345666655
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+.......+..|+||||+|.+.. ...+.|+..++ +...++++|++|+.+..|.
T Consensus 112 ~l~~~p~~g~~KV~IIDEah~Ls~-------------~A~NALLKtLE-------------EPp~~viFILaTte~~kI~ 165 (484)
T PRK14956 112 NVKFAPMGGKYKVYIIDEVHMLTD-------------QSFNALLKTLE-------------EPPAHIVFILATTEFHKIP 165 (484)
T ss_pred HHHhhhhcCCCEEEEEechhhcCH-------------HHHHHHHHHhh-------------cCCCceEEEeecCChhhcc
Confidence 554222255678999999997742 12345566555 5567889999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHH
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLV 333 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~ 333 (473)
+++++ |+..+.+ .++.++-.+.++.++...++ +.+.+..++
T Consensus 166 ~TI~S--RCq~~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia 209 (484)
T PRK14956 166 ETILS--RCQDFIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIA 209 (484)
T ss_pred HHHHh--hhheeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 99999 9876666 46677777777777665544 444443333
No 67
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.45 E-value=1.7e-12 Score=145.65 Aligned_cols=146 Identities=17% Similarity=0.218 Sum_probs=100.7
Q ss_pred CCC-cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc-----CCCCChHHHH----HHHHHHHHHHHHcCCceEE
Q 011983 155 KVP-LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-----GNAGEPAKLI----RQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p-~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s-----~~~Ge~~~~i----r~~f~~A~~~~~~~~p~IL 224 (473)
..| ..+||+||||||||++|+++|+.++.+|+.+++++... .++|.+..++ ...+.++ +++...+||
T Consensus 485 ~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~~~gyvg~~~~g~L~~~---v~~~p~sVl 561 (758)
T PRK11034 485 HKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA---VIKHPHAVL 561 (758)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCCCCCcccccccchHHHH---HHhCCCcEE
Confidence 345 46999999999999999999999999999999877532 2223221111 0122222 125667999
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC------------------
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------------------ 286 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~------------------ 286 (473)
||||+|++.+ .+.+.|++++++.+...-.|. .....+++||+|||.-
T Consensus 562 llDEieka~~-------------~v~~~LLq~ld~G~ltd~~g~--~vd~rn~iiI~TsN~g~~~~~~~~~g~~~~~~~~ 626 (758)
T PRK11034 562 LLDEIEKAHP-------------DVFNLLLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNST 626 (758)
T ss_pred EeccHhhhhH-------------HHHHHHHHHHhcCeeecCCCc--eecCCCcEEEEeCCcCHHHHhhcccCcccchhhH
Confidence 9999998742 366888888885443322222 3345789999999932
Q ss_pred -------CCCccccccCCCceEEEec--CCHHHHHHHHHhhcC
Q 011983 287 -------STLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320 (473)
Q Consensus 287 -------~~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~ 320 (473)
..+.|+|+. |+|.++.+ .+.++..+|+..++.
T Consensus 627 ~~~~~~~~~f~pefl~--Rid~ii~f~~L~~~~l~~I~~~~l~ 667 (758)
T PRK11034 627 DAMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIV 667 (758)
T ss_pred HHHHHHHHhcCHHHHc--cCCEEEEcCCCCHHHHHHHHHHHHH
Confidence 235688888 99988874 588888888875553
No 68
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.45 E-value=1.2e-12 Score=131.81 Aligned_cols=156 Identities=16% Similarity=0.158 Sum_probs=100.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..|..++||||||||||++|+++|++++..+..+.++.+.. ...+...+.. ...+.+|||||++.+..
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~------~~~l~~~l~~------~~~~~vl~iDEi~~l~~ 95 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEK------PGDLAAILTN------LEEGDVLFIDEIHRLSP 95 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcC------chhHHHHHHh------cccCCEEEEehHhhhCH
Confidence 45678999999999999999999999998876666543321 1122222221 34578999999998753
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcc----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYN----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~----~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
. ....|.+++++-. .+-++..+. ....+.+.+|++||++..++++|++ ||...+. .|+
T Consensus 96 ~-------------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l~s--R~~~~~~l~~l~ 160 (305)
T TIGR00635 96 A-------------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPLRD--RFGIILRLEFYT 160 (305)
T ss_pred H-------------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHHHh--hcceEEEeCCCC
Confidence 2 1122333332111 011111000 0123457788999999999999999 8876655 589
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHhcCC
Q 011983 308 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFP 337 (473)
Q Consensus 308 ~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~s 337 (473)
.+++.+|++..... ..++.+.+..+++...
T Consensus 161 ~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~ 192 (305)
T TIGR00635 161 VEELAEIVSRSAGLLNVEIEPEAALEIARRSR 192 (305)
T ss_pred HHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhC
Confidence 99999999977654 3456666666665533
No 69
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.45 E-value=1e-12 Score=144.94 Aligned_cols=169 Identities=12% Similarity=0.154 Sum_probs=112.6
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++- ..++..+++++.. .+.+..+|||||+|||||++++++|+.++..
T Consensus 14 tFdEVIGQ---------e~Vv~~L~~aL~~--gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr~I 82 (830)
T PRK07003 14 DFASLVGQ---------EHVVRALTHALDG--GRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACREI 82 (830)
T ss_pred cHHHHcCc---------HHHHHHHHHHHhc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHHHH
Confidence 37777764 2233334444432 3678889999999999999999999997642
Q ss_pred -------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 185 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 185 -------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
++.++.++ ......+|++.+.+...-...+..|+||||+|.+... ..+.|+..+
T Consensus 83 ~~G~h~DviEIDAas------~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~-------------A~NALLKtL 143 (830)
T PRK07003 83 DEGRFVDYVEMDAAS------NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNH-------------AFNAMLKTL 143 (830)
T ss_pred hcCCCceEEEecccc------cccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHH-------------HHHHHHHHH
Confidence 22222221 1123456666665542222456789999999977321 224566656
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~ 334 (473)
+ +...++.||++||+++.|.+.|++ |+-.+-+ .++.++..++|+.++..+++ +.+.+..++.
T Consensus 144 E-------------EPP~~v~FILaTtd~~KIp~TIrS--RCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~ 208 (830)
T PRK07003 144 E-------------EPPPHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPAGHIVSHLERILGEERIAFEPQALRLLAR 208 (830)
T ss_pred H-------------hcCCCeEEEEEECChhhccchhhh--heEEEecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 556788999999999999999999 9866655 47888888888888876654 4555544444
Q ss_pred c
Q 011983 335 T 335 (473)
Q Consensus 335 ~ 335 (473)
.
T Consensus 209 ~ 209 (830)
T PRK07003 209 A 209 (830)
T ss_pred H
Confidence 3
No 70
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.42 E-value=5.1e-12 Score=142.25 Aligned_cols=142 Identities=15% Similarity=0.219 Sum_probs=100.6
Q ss_pred CCCc-EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc------------CCCCChH-HHHHHHHHHHHHHHHcCC
Q 011983 155 KVPL-ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------------GNAGEPA-KLIRQRYREAADIIKKGK 220 (473)
Q Consensus 155 ~~p~-glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s------------~~~Ge~~-~~ir~~f~~A~~~~~~~~ 220 (473)
..|. .+||+||||||||++|+++|+.++.+++.++++++.. +|+|... ..+.+.+ +...
T Consensus 481 ~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~~~gyvg~~~~~~l~~~~-------~~~p 553 (731)
T TIGR02639 481 NKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGAPPGYVGFEQGGLLTEAV-------RKHP 553 (731)
T ss_pred CCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcCCCCCcccchhhHHHHHH-------HhCC
Confidence 3455 5899999999999999999999999999999877542 2333211 1222222 2567
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------------
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS------------- 287 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~------------- 287 (473)
.+||||||+|++.+ .+.+.|++++++..... +........+++||+|||...
T Consensus 554 ~~VvllDEieka~~-------------~~~~~Ll~~ld~g~~~d--~~g~~vd~~~~iii~Tsn~g~~~~~~~~~~f~~~ 618 (731)
T TIGR02639 554 HCVLLLDEIEKAHP-------------DIYNILLQVMDYATLTD--NNGRKADFRNVILIMTSNAGASEMSKPPIGFGSE 618 (731)
T ss_pred CeEEEEechhhcCH-------------HHHHHHHHhhccCeeec--CCCcccCCCCCEEEECCCcchhhhhhccCCcchh
Confidence 79999999997743 35678888888544332 222234457899999998742
Q ss_pred ------------CCccccccCCCceEEEec--CCHHHHHHHHHhhcC
Q 011983 288 ------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320 (473)
Q Consensus 288 ------------~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~ 320 (473)
.+.|+|+. |||.++.+ .+.++..+|++..+.
T Consensus 619 ~~~~~~~~~~~~~f~pef~~--Rid~Vi~F~pLs~e~l~~Iv~~~L~ 663 (731)
T TIGR02639 619 NVESKSDKAIKKLFSPEFRN--RLDAIIHFNPLSEEVLEKIVQKFVD 663 (731)
T ss_pred hhHHHHHHHHHhhcChHHHh--cCCeEEEcCCCCHHHHHHHHHHHHH
Confidence 25677777 99988874 689999999886664
No 71
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.42 E-value=1.7e-12 Score=141.49 Aligned_cols=159 Identities=13% Similarity=0.177 Sum_probs=108.6
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------ 183 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------ 183 (473)
+|+++++- ..++..+++.+.. .+.+..+||+||+|+|||++|+.+|+.+..
T Consensus 14 tFddVIGQ---------e~vv~~L~~al~~--gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~C~ 82 (700)
T PRK12323 14 DFTTLVGQ---------EHVVRALTHALEQ--QRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQCR 82 (700)
T ss_pred cHHHHcCc---------HHHHHHHHHHHHh--CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcccH
Confidence 37777764 2233344444433 367889999999999999999999999764
Q ss_pred -----------CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHH
Q 011983 184 -----------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 252 (473)
Q Consensus 184 -----------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~ 252 (473)
.++.++..+ ......+|++.+.+...-..++..|+||||+|.+.. ...+.
T Consensus 83 sC~~I~aG~hpDviEIdAas------~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~-------------~AaNA 143 (700)
T PRK12323 83 ACTEIDAGRFVDYIEMDAAS------NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTN-------------HAFNA 143 (700)
T ss_pred HHHHHHcCCCCcceEecccc------cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCH-------------HHHHH
Confidence 222222221 112355667666554222256678999999997732 12345
Q ss_pred HHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC
Q 011983 253 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 325 (473)
Q Consensus 253 Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~ 325 (473)
|+..++ +...++.+|++||+++.|.+.|++ |+-.+.+ .++.++..+.++.++...++.
T Consensus 144 LLKTLE-------------EPP~~v~FILaTtep~kLlpTIrS--RCq~f~f~~ls~eei~~~L~~Il~~Egi~ 202 (700)
T PRK12323 144 MLKTLE-------------EPPEHVKFILATTDPQKIPVTVLS--RCLQFNLKQMPPGHIVSHLDAILGEEGIA 202 (700)
T ss_pred HHHhhc-------------cCCCCceEEEEeCChHhhhhHHHH--HHHhcccCCCChHHHHHHHHHHHHHcCCC
Confidence 666565 567888999999999999999999 8866555 578888888888777655443
No 72
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.42 E-value=3e-12 Score=134.46 Aligned_cols=128 Identities=17% Similarity=0.226 Sum_probs=88.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
...+||+||||||||++|+++|+.++.+|..++++.+. .+|+|.. +..+...++.+...++...++||||||+|++..
T Consensus 116 ~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~ 195 (413)
T TIGR00382 116 KSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISR 195 (413)
T ss_pred CceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccccccHHHHHHHHHHhCcccHHhcccceEEecccchhch
Confidence 36899999999999999999999999999999988875 4688875 445555555443333456788999999999987
Q ss_pred cCCCC-CccchhhHHHHHHHHHhhcCCCcccCCCC-cccCCCCCceEEEecCC
Q 011983 235 RMGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGND 285 (473)
Q Consensus 235 ~r~~~-~~~~~~~~~v~~~Ll~lld~~~~v~l~g~-~~~~~~~~V~VIaTTN~ 285 (473)
++.+. ...++....+++.|+++++ .+.+.++.. -......+.++|.|+|-
T Consensus 196 ~~~~~s~~~dvsg~~vq~~LL~iLe-G~~~~v~~~~gr~~~~~~~i~i~TsNi 247 (413)
T TIGR00382 196 KSENPSITRDVSGEGVQQALLKIIE-GTVANVPPQGGRKHPYQEFIQIDTSNI 247 (413)
T ss_pred hhccccccccccchhHHHHHHHHhh-ccceecccCCCccccCCCeEEEEcCCc
Confidence 53321 1223444568888889885 444432211 01123355667777775
No 73
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.41 E-value=4.3e-12 Score=135.79 Aligned_cols=148 Identities=13% Similarity=0.171 Sum_probs=100.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||||||++|+++|+.++. .++.++++. ......+|++.+
T Consensus 34 ~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv~el~aa~------~~gid~iR~i~~ 107 (472)
T PRK14962 34 SISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDVIELDAAS------NRGIDEIRKIRD 107 (472)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCccEEEeCcc------cCCHHHHHHHHH
Confidence 57788999999999999999999999764 244444321 112345666655
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......||||||+|.+.. .....|+..++ ...+.+.+|++|+.+..++
T Consensus 108 ~~~~~p~~~~~kVvIIDE~h~Lt~-------------~a~~~LLk~LE-------------~p~~~vv~Ilattn~~kl~ 161 (472)
T PRK14962 108 AVGYRPMEGKYKVYIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSHVVFVLATTNLEKVP 161 (472)
T ss_pred HHhhChhcCCeEEEEEEChHHhHH-------------HHHHHHHHHHH-------------hCCCcEEEEEEeCChHhhh
Confidence 543111134567999999997732 12244555444 3456677787777888999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcC
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 336 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 336 (473)
++|++ |+..+-+ .|+.++...+++..+... .++.+.+..++...
T Consensus 162 ~~L~S--R~~vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s 208 (472)
T PRK14962 162 PTIIS--RCQVIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRA 208 (472)
T ss_pred HHHhc--CcEEEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Confidence 99999 8765444 578888888888877553 46666666666654
No 74
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.40 E-value=1.5e-11 Score=129.83 Aligned_cols=144 Identities=17% Similarity=0.186 Sum_probs=101.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
.+..++||||||||||++|+++|+.++..|+.+++... ....++.+++.+.......+..||||||+|.+...
T Consensus 35 ~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~-------~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~~~ 107 (413)
T PRK13342 35 RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS-------GVKDLREVIEEARQRRSAGRRTILFIDEIHRFNKA 107 (413)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc-------cHHHHHHHHHHHHHhhhcCCceEEEEechhhhCHH
Confidence 34579999999999999999999999999999887532 24567777777754443557899999999976321
Q ss_pred CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011983 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRI 312 (473)
Q Consensus 236 r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 312 (473)
....|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.++..
T Consensus 108 -------------~q~~LL~~le---------------~~~iilI~att~n~~~~l~~aL~S--R~~~~~~~~ls~e~i~ 157 (413)
T PRK13342 108 -------------QQDALLPHVE---------------DGTITLIGATTENPSFEVNPALLS--RAQVFELKPLSEEDIE 157 (413)
T ss_pred -------------HHHHHHHHhh---------------cCcEEEEEeCCCChhhhccHHHhc--cceeeEeCCCCHHHHH
Confidence 2244555444 2445666544 445689999999 8844333 47889999
Q ss_pred HHHHhhcCC----C-CCCHHHHHHHHhcC
Q 011983 313 GVCSGIFRT----D-NVPKEDIVKLVDTF 336 (473)
Q Consensus 313 ~Il~~~l~~----~-~v~~~~l~~l~~~~ 336 (473)
.+++..+.. . .++.+.+..++...
T Consensus 158 ~lL~~~l~~~~~~~i~i~~~al~~l~~~s 186 (413)
T PRK13342 158 QLLKRALEDKERGLVELDDEALDALARLA 186 (413)
T ss_pred HHHHHHHHHhhcCCCCCCHHHHHHHHHhC
Confidence 999877643 1 46666666665543
No 75
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.40 E-value=2.8e-12 Score=134.38 Aligned_cols=151 Identities=17% Similarity=0.163 Sum_probs=97.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-----------------------EEecccccccCCCCChHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-----------------------IMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-----------------------i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
.+.|.++|||||||+|||++|+++|+.+...- ..+... .. .-....||++++
T Consensus 33 ~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~~hpD~~~i~~~---~~--~i~i~~iR~l~~ 107 (394)
T PRK07940 33 SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAGTHPDVRVVAPE---GL--SIGVDEVRELVT 107 (394)
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeccc---cc--cCCHHHHHHHHH
Confidence 35789999999999999999999999864321 111111 01 112345778887
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......|+||||+|.+... ..+.|+..++ ++.+++++|++|++++.|.
T Consensus 108 ~~~~~p~~~~~kViiIDead~m~~~-------------aanaLLk~LE-------------ep~~~~~fIL~a~~~~~ll 161 (394)
T PRK07940 108 IAARRPSTGRWRIVVIEDADRLTER-------------AANALLKAVE-------------EPPPRTVWLLCAPSPEDVL 161 (394)
T ss_pred HHHhCcccCCcEEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCCeEEEEECChHHCh
Confidence 7642212345679999999987322 1245666666 4456677777777799999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHH---HHHHHhcCCCCc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED---IVKLVDTFPGQS 340 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~---l~~l~~~~sga~ 340 (473)
|.+++ |+-.+.+ .|+.++..+++... .+++.+. ++.++.+.++..
T Consensus 162 pTIrS--Rc~~i~f~~~~~~~i~~~L~~~---~~~~~~~a~~la~~s~G~~~~A 210 (394)
T PRK07940 162 PTIRS--RCRHVALRTPSVEAVAEVLVRR---DGVDPETARRAARASQGHIGRA 210 (394)
T ss_pred HHHHh--hCeEEECCCCCHHHHHHHHHHh---cCCCHHHHHHHHHHcCCCHHHH
Confidence 99999 8854444 58888887777532 2355553 444555544433
No 76
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.39 E-value=7.9e-12 Score=124.16 Aligned_cols=146 Identities=16% Similarity=0.248 Sum_probs=93.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc------cccCCCCChHHHHHHHHHHH--------------HHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LESGNAGEPAKLIRQRYREA--------------ADIIK 217 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~------l~s~~~Ge~~~~ir~~f~~A--------------~~~~~ 217 (473)
..+||+||||||||++|+++|+.+|.+++.+++.. +.+.+.|.....+..-|... ..+..
T Consensus 22 ~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~ 101 (262)
T TIGR02640 22 YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTL 101 (262)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHH
Confidence 46899999999999999999999999999887643 33333332222111111000 00000
Q ss_pred -cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc----CCCCCceEEEecCCC-----C
Q 011983 218 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ----EENPRVPIIVTGNDF-----S 287 (473)
Q Consensus 218 -~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~----~~~~~V~VIaTTN~~-----~ 287 (473)
...+.+|+|||+|.+-+ .+...|+.++++ ..+.+++.-.. ...++..||+|+|.. .
T Consensus 102 A~~~g~~lllDEi~r~~~-------------~~q~~Ll~~Le~-~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~ 167 (262)
T TIGR02640 102 AVREGFTLVYDEFTRSKP-------------ETNNVLLSVFEE-GVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVH 167 (262)
T ss_pred HHHcCCEEEEcchhhCCH-------------HHHHHHHHHhcC-CeEEccCCCCCCceEecCCCCEEEEeeCCcccccee
Confidence 22456999999997532 345667777764 23334332000 122467799999976 3
Q ss_pred CCccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 288 TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 288 ~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
.++++|++ ||-.... .|+.++-.+|++..+
T Consensus 168 ~l~~aL~~--R~~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 168 ETQDALLD--RLITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred cccHHHHh--hcEEEECCCCCHHHHHHHHHHhh
Confidence 67899999 8854433 799999999998876
No 77
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.39 E-value=6.4e-12 Score=137.26 Aligned_cols=169 Identities=12% Similarity=0.170 Sum_probs=111.9
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------ 183 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------ 183 (473)
+|+++.+- ..+...+++.+.. .+.+..+||+||||+|||++|+++|+.++.
T Consensus 13 tFddVIGQ---------e~vv~~L~~aI~~--grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~~I 81 (702)
T PRK14960 13 NFNELVGQ---------NHVSRALSSALER--GRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCKAV 81 (702)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHHHH
Confidence 37777664 2223333444332 366889999999999999999999999764
Q ss_pred ------CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 184 ------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 184 ------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
.++.+++++- .....+|++...+...-..++..|+||||+|.+... ..+.|+.++
T Consensus 82 ~~g~hpDviEIDAAs~------~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~-------------A~NALLKtL 142 (702)
T PRK14960 82 NEGRFIDLIEIDAASR------TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTH-------------SFNALLKTL 142 (702)
T ss_pred hcCCCCceEEeccccc------CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHH-------------HHHHHHHHH
Confidence 2333333211 123456666665532222456789999999976321 234566666
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
+ +...++.+|++|+++..+++.+++ |+..+-+ .++.++..+.++.++...+ ++.+.+..++.
T Consensus 143 E-------------EPP~~v~FILaTtd~~kIp~TIlS--RCq~feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~ 207 (702)
T PRK14960 143 E-------------EPPEHVKFLFATTDPQKLPITVIS--RCLQFTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAE 207 (702)
T ss_pred h-------------cCCCCcEEEEEECChHhhhHHHHH--hhheeeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 445678889999999999999888 8866555 5788888888888887654 44555555554
Q ss_pred c
Q 011983 335 T 335 (473)
Q Consensus 335 ~ 335 (473)
.
T Consensus 208 ~ 208 (702)
T PRK14960 208 S 208 (702)
T ss_pred H
Confidence 4
No 78
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.37 E-value=1.3e-11 Score=138.39 Aligned_cols=173 Identities=14% Similarity=0.186 Sum_probs=108.5
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcE-E-ecccc------c
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPI-M-MSAGE------L 193 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i-~-vs~s~------l 193 (473)
+|+++++- ..++..+++.+.. .+.|..+|||||||||||++|+++|+.++..-. . ..|.. +
T Consensus 14 tFddIIGQ---------e~Iv~~LknaI~~--~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~~i 82 (944)
T PRK14949 14 TFEQMVGQ---------SHVLHALTNALTQ--QRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCVEI 82 (944)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHh--CCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHHHH
Confidence 37777764 2233334554443 267888999999999999999999999865310 0 00000 0
Q ss_pred ccC-------CCC---ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcc
Q 011983 194 ESG-------NAG---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263 (473)
Q Consensus 194 ~s~-------~~G---e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v 263 (473)
... +-+ .....+|++.+.+...-..++..|+||||+|.+-. ...+.|+..++
T Consensus 83 ~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~-------------eAqNALLKtLE----- 144 (944)
T PRK14949 83 AQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSR-------------SSFNALLKTLE----- 144 (944)
T ss_pred hcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCH-------------HHHHHHHHHHh-----
Confidence 000 001 12345666665553222245678999999998732 23356667666
Q ss_pred cCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHH
Q 011983 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLV 333 (473)
Q Consensus 264 ~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~ 333 (473)
+...++.+|++|+.+..|.+.|++ |+-.+-+ .++.++....|+.++...++ +.+.+..++
T Consensus 145 --------EPP~~vrFILaTTe~~kLl~TIlS--RCq~f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA 207 (944)
T PRK14949 145 --------EPPEHVKFLLATTDPQKLPVTVLS--RCLQFNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLA 207 (944)
T ss_pred --------ccCCCeEEEEECCCchhchHHHHH--hheEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 556778888889889999999998 8755444 46788888888887765444 333444433
No 79
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.36 E-value=1.8e-11 Score=120.89 Aligned_cols=151 Identities=17% Similarity=0.187 Sum_probs=102.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..+-++|||||||.|||+||..||+++|.++-..+++-|.. ..-+-.++. .-....|||||||+.+.+
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK------~gDlaaiLt------~Le~~DVLFIDEIHrl~~ 117 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEK------PGDLAAILT------NLEEGDVLFIDEIHRLSP 117 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccC------hhhHHHHHh------cCCcCCeEEEehhhhcCh
Confidence 56678999999999999999999999999998888886652 111222222 134578999999998864
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCC---CC-----cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLP---GM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-- 304 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~---g~-----~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-- 304 (473)
. +-..|.-.+++ .++| |. ...-+.+.-.+|++|-+...|..+|+. ||.....
T Consensus 118 ~-------------vEE~LYpaMED---f~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~lt~PLrd--RFGi~~rle 179 (332)
T COG2255 118 A-------------VEEVLYPAMED---FRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGMLTNPLRD--RFGIIQRLE 179 (332)
T ss_pred h-------------HHHHhhhhhhh---eeEEEEEccCCccceEeccCCCeeEeeeccccccccchhHH--hcCCeeeee
Confidence 3 22333332221 1222 11 001224556699999999999999999 8877666
Q ss_pred cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhc
Q 011983 305 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDT 335 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~ 335 (473)
+.+.++..+|+...... -.++.+...+++.+
T Consensus 180 fY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~r 212 (332)
T COG2255 180 FYTVEELEEIVKRSAKILGIEIDEEAALEIARR 212 (332)
T ss_pred cCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHh
Confidence 68999999999865543 45566655444444
No 80
>PLN03025 replication factor C subunit; Provisional
Probab=99.36 E-value=8e-12 Score=127.41 Aligned_cols=145 Identities=14% Similarity=0.203 Sum_probs=96.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-C----CCcEEecccccccCCCCChHHHHHHHHHHHHHH---HHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM-G----INPIMMSAGELESGNAGEPAKLIRQRYREAADI---IKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l-g----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~---~~~~~p~ILfIDEiD 230 (473)
.+|||||||||||++|+++|+++ + ..++.++.++.. | ...++...+..... .....+.|++|||+|
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~----~--~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d 109 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR----G--IDVVRNKIKMFAQKKVTLPPGRHKIVILDEAD 109 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc----c--HHHHHHHHHHHHhccccCCCCCeEEEEEechh
Confidence 58999999999999999999996 2 235556655432 1 12344443322100 002357899999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 309 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~e 309 (473)
.+... ..+.|+..++ .......+|++||..+.+.++|++ |+..+-+ .|+.+
T Consensus 110 ~lt~~-------------aq~aL~~~lE-------------~~~~~t~~il~~n~~~~i~~~L~S--Rc~~i~f~~l~~~ 161 (319)
T PLN03025 110 SMTSG-------------AQQALRRTME-------------IYSNTTRFALACNTSSKIIEPIQS--RCAIVRFSRLSDQ 161 (319)
T ss_pred hcCHH-------------HHHHHHHHHh-------------cccCCceEEEEeCCccccchhHHH--hhhcccCCCCCHH
Confidence 87432 1244555454 223456688899999999999998 7643333 48899
Q ss_pred HHHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 310 DRIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 310 eR~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
+....++.++...+ ++.+.+..++....
T Consensus 162 ~l~~~L~~i~~~egi~i~~~~l~~i~~~~~ 191 (319)
T PLN03025 162 EILGRLMKVVEAEKVPYVPEGLEAIIFTAD 191 (319)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99999998887654 56667777776643
No 81
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.35 E-value=1.4e-11 Score=127.96 Aligned_cols=147 Identities=12% Similarity=0.157 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+||+||||+|||++|+++|+++... ++.++++. ......++++.+
T Consensus 36 ~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~~~~~~~~~d~~~~~~~~------~~~v~~ir~i~~ 109 (363)
T PRK14961 36 RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICKEIEKGLCLDLIEIDAAS------RTKVEEMREILD 109 (363)
T ss_pred CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceEEecccc------cCCHHHHHHHHH
Confidence 578889999999999999999999997532 11121110 012344555555
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......|+||||+|.+.. ...+.|+..++ +...++.+|++|++++.+.
T Consensus 110 ~~~~~p~~~~~kviIIDEa~~l~~-------------~a~naLLk~lE-------------e~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 110 NIYYSPSKSRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPQHIKFILATTDVEKIP 163 (363)
T ss_pred HHhcCcccCCceEEEEEChhhcCH-------------HHHHHHHHHHh-------------cCCCCeEEEEEcCChHhhh
Confidence 432110123457999999997632 12234555454 4456777888888899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
+++++ |+-.+-+ .|+.++..++++.++...+ ++.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~ 209 (363)
T PRK14961 164 KTILS--RCLQFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYH 209 (363)
T ss_pred HHHHh--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99988 7744333 4789999999998887655 555555555544
No 82
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.34 E-value=2e-11 Score=134.43 Aligned_cols=159 Identities=16% Similarity=0.200 Sum_probs=105.9
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++- ..++..+++.+.. .+.|..+|||||||+|||++|+++|+.++..
T Consensus 14 ~f~divGQ---------e~vv~~L~~~l~~--~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~~i 82 (647)
T PRK07994 14 TFAEVVGQ---------EHVLTALANALDL--GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCREI 82 (647)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHHHH
Confidence 47777764 2223333444433 2578889999999999999999999997652
Q ss_pred -------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 185 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 185 -------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
++.+++.. ......+|++.+.+...-..+...|+||||+|.+.. ...+.|+..+
T Consensus 83 ~~g~~~D~ieidaas------~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~-------------~a~NALLKtL 143 (647)
T PRK07994 83 EQGRFVDLIEIDAAS------RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTL 143 (647)
T ss_pred HcCCCCCceeecccc------cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCH-------------HHHHHHHHHH
Confidence 22232221 012345666665543222255678999999997732 1235666666
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP 325 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~ 325 (473)
+ +...++.+|++|+++..|.+.|++ |+-.+.+ .++.++-...|+.++...++.
T Consensus 144 E-------------EPp~~v~FIL~Tt~~~kLl~TI~S--RC~~~~f~~Ls~~ei~~~L~~il~~e~i~ 197 (647)
T PRK07994 144 E-------------EPPEHVKFLLATTDPQKLPVTILS--RCLQFHLKALDVEQIRQQLEHILQAEQIP 197 (647)
T ss_pred H-------------cCCCCeEEEEecCCccccchHHHh--hheEeeCCCCCHHHHHHHHHHHHHHcCCC
Confidence 6 556788889889999999999999 8744444 478888888888877654443
No 83
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.33 E-value=2.9e-11 Score=124.69 Aligned_cols=168 Identities=15% Similarity=0.192 Sum_probs=98.4
Q ss_pred cCCCCChhhHHHHH-HHHHHhhhcC-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEecccccccC
Q 011983 128 DGLYIAPAFMDKVV-VHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG 196 (473)
Q Consensus 128 ~~~~i~~~~~d~~~-~~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s~ 196 (473)
...|+|+.+..+.. ...+..++.. .....|..++||||||||||++++++++++. +.++++++....+.
T Consensus 9 ~~~~~p~~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 9 EPDYVPDRIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCCCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 34566666655431 1112222211 1124567899999999999999999998753 46777777543211
Q ss_pred ----------C---------CCC-hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHh
Q 011983 197 ----------N---------AGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256 (473)
Q Consensus 197 ----------~---------~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l 256 (473)
. .|. ....++.+++.. .+..++.||+|||+|.+.+.. + .+...|+.+
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l---~~~~~~~vlvIDE~d~L~~~~----~------~~L~~l~~~ 155 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKEL---NERGDSLIIVLDEIDYLVGDD----D------DLLYQLSRA 155 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHH---HhcCCeEEEEECchhhhccCC----c------HHHHhHhcc
Confidence 0 010 112222233221 124568899999999997321 1 122233332
Q ss_pred hcCCCcccCCCCcccCCCCCceEEEecCCCC---CCccccccCCCce-EEEe--cCCHHHHHHHHHhhcC
Q 011983 257 ADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR 320 (473)
Q Consensus 257 ld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~---~Ld~aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~ 320 (473)
.+ +......++.+|+++|+++ .+++.+.+ ||. ..+. .++.++..+|++..+.
T Consensus 156 ~~----------~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s--~~~~~~i~f~p~~~~e~~~il~~r~~ 213 (365)
T TIGR02928 156 RS----------NGDLDNAKVGVIGISNDLKFRENLDPRVKS--SLCEEEIIFPPYDAEELRDILENRAE 213 (365)
T ss_pred cc----------ccCCCCCeEEEEEEECCcchHhhcCHHHhc--cCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 11 0112346788999999886 57888877 664 3344 4799999999997764
No 84
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.33 E-value=7.2e-12 Score=133.59 Aligned_cols=177 Identities=18% Similarity=0.194 Sum_probs=110.1
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHH
Q 011983 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 215 (473)
Q Consensus 141 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~ 215 (473)
....++.+...++ .....++||||||||||+|++++++++ +..++++++.++...+...........|.+.
T Consensus 133 a~~~~~~~~~~~~-~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~--- 208 (450)
T PRK00149 133 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTNDFVNALRNNTMEEFKEK--- 208 (450)
T ss_pred HHHHHHHHHhCcC-ccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHcCcHHHHHHH---
Confidence 4444555444443 334569999999999999999999996 5668888887765432211110001122221
Q ss_pred HHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CCC---Ccc
Q 011983 216 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYA 291 (473)
Q Consensus 216 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~~---Ld~ 291 (473)
-..+.+|+|||+|.+.++.. ..+.+..++..+.+ .+..+|+|+|. |.. +++
T Consensus 209 --~~~~dlLiiDDi~~l~~~~~-------~~~~l~~~~n~l~~----------------~~~~iiits~~~p~~l~~l~~ 263 (450)
T PRK00149 209 --YRSVDVLLIDDIQFLAGKER-------TQEEFFHTFNALHE----------------AGKQIVLTSDRPPKELPGLEE 263 (450)
T ss_pred --HhcCCEEEEehhhhhcCCHH-------HHHHHHHHHHHHHH----------------CCCcEEEECCCCHHHHHHHHH
Confidence 22578999999998865421 11233333323222 12235555554 444 678
Q ss_pred ccccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchhhHHHHH
Q 011983 292 PLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGALR 348 (473)
Q Consensus 292 aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~f~gal~ 348 (473)
.|.+ ||.. .+. .|+.++|..|++..+.. ..++.+.+..+++.+.+.--...|++.
T Consensus 264 ~l~S--Rl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~R~l~~~l~ 324 (450)
T PRK00149 264 RLRS--RFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITSNVRELEGALN 324 (450)
T ss_pred HHHh--HhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCCCHHHHHHHHH
Confidence 8888 8864 333 59999999999988764 357788888888888776555554443
No 85
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.32 E-value=3.6e-11 Score=127.95 Aligned_cols=164 Identities=15% Similarity=0.147 Sum_probs=104.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
...++||||||+|||+|++++++++ +..+++++...+...+.......-.+.|+.. -....+|+|||++.+.
T Consensus 141 ~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~~~~~l~~~~~~~f~~~-----~~~~dvLiIDDiq~l~ 215 (445)
T PRK12422 141 FNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEHLVSAIRSGEMQRFRQF-----YRNVDALFIEDIEVFS 215 (445)
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHHHHHHHhcchHHHHHHH-----cccCCEEEEcchhhhc
Confidence 3579999999999999999999985 6788888876654321110000000122221 3457899999999876
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-C---CCCccccccCCCce--EEEe--c
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-F---STLYAPLIRDGRME--KFYW--A 305 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~---~~Ld~aLlR~GRfd--~~i~--~ 305 (473)
++.. + .+.+..++-.+.+ .+..+|+|+|. | ..+++.|++ ||. ..+. .
T Consensus 216 ~k~~--~-----qeelf~l~N~l~~----------------~~k~IIlts~~~p~~l~~l~~rL~S--R~~~Gl~~~l~~ 270 (445)
T PRK12422 216 GKGA--T-----QEEFFHTFNSLHT----------------EGKLIVISSTCAPQDLKAMEERLIS--RFEWGIAIPLHP 270 (445)
T ss_pred CChh--h-----HHHHHHHHHHHHH----------------CCCcEEEecCCCHHHHhhhHHHHHh--hhcCCeEEecCC
Confidence 5321 1 1233333222221 23357777765 3 356788999 885 4444 4
Q ss_pred CCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCCCchhhHHHHHHH
Q 011983 306 PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGALRAR 350 (473)
Q Consensus 306 P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~f~gal~~~ 350 (473)
|+.++|..|++...... .++.+.+..++..+++..-...|++..-
T Consensus 271 pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~dir~L~g~l~~l 317 (445)
T PRK12422 271 LTKEGLRSFLERKAEALSIRIEETALDFLIEALSSNVKSLLHALTLL 317 (445)
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 99999999999877654 4677777778888887655666666544
No 86
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.32 E-value=2.7e-11 Score=136.98 Aligned_cols=147 Identities=12% Similarity=0.106 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC--------------------------cEEecccccccCCCCChHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--------------------------PIMMSAGELESGNAGEPAKLIRQR 208 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~--------------------------~i~vs~s~l~s~~~Ge~~~~ir~~ 208 (473)
+.+..+|||||+|||||++|++||+.+... |+.+++... .....||++
T Consensus 35 ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~~~~~g~~~~~dv~eidaas~------~~Vd~iR~l 108 (824)
T PRK07764 35 RINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCVALAPGGPGSLDVTEIDAASH------GGVDDAREL 108 (824)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHHHHHcCCCCCCcEEEeccccc------CCHHHHHHH
Confidence 677889999999999999999999998531 222222110 113445554
Q ss_pred HHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC
Q 011983 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288 (473)
Q Consensus 209 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~ 288 (473)
-+++...-......|+||||+|.+.. ...+.|+++++ +...++.+|++|+.++.
T Consensus 109 ~~~~~~~p~~~~~KV~IIDEad~lt~-------------~a~NaLLK~LE-------------EpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 109 RERAFFAPAESRYKIFIIDEAHMVTP-------------QGFNALLKIVE-------------EPPEHLKFIFATTEPDK 162 (824)
T ss_pred HHHHHhchhcCCceEEEEechhhcCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEeCChhh
Confidence 44332111146678999999998742 22356777666 55677888888888899
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 289 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 289 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
|.+.|++ |+..+-+ .++.++..++|+.++...++ +.+.+..++..
T Consensus 163 Ll~TIrS--Rc~~v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~ 210 (824)
T PRK07764 163 VIGTIRS--RTHHYPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRA 210 (824)
T ss_pred hhHHHHh--heeEEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 9999998 7655544 57888888888888876555 44444444333
No 87
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.32 E-value=7e-13 Score=123.80 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=85.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~----~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
|-..+||+||+|||||.+|+++|+.+.. +++.++++++... ++....+..++..+..........||||||||+
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~--~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidK 79 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEG--DDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDK 79 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSH--HHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGG
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhccccc--chHHhhhhhhhhcccceeeccchhhhhhHHHhh
Confidence 4467899999999999999999999997 9999999988751 011122222332221111122234999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~ 288 (473)
+.++.+ ...++....|.+.|++++++.+...-.| ......+++||+|+|--..
T Consensus 80 a~~~~~--~~~~v~~~~V~~~LL~~le~g~~~d~~g--~~vd~~n~ifI~Tsn~~~~ 132 (171)
T PF07724_consen 80 AHPSNS--GGADVSGEGVQNSLLQLLEGGTLTDSYG--RTVDTSNIIFIMTSNFGAE 132 (171)
T ss_dssp CSHTTT--TCSHHHHHHHHHHHHHHHHHSEEEETTC--CEEEGTTEEEEEEESSSTH
T ss_pred cccccc--ccchhhHHHHHHHHHHHhcccceecccc--eEEEeCCceEEEecccccc
Confidence 988622 3446667789999999998544332222 2345689999999997653
No 88
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.32 E-value=1e-11 Score=130.60 Aligned_cols=176 Identities=18% Similarity=0.193 Sum_probs=106.9
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHH
Q 011983 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 215 (473)
Q Consensus 141 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~ 215 (473)
....++.+...++ .....++||||||+|||+|++++++++ +..++++++.++...+.......-...|.+.
T Consensus 121 a~~~~~~~~~~~~-~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~~~~~~~~~~~~~~~~~~--- 196 (405)
T TIGR00362 121 AHAAALAVAENPG-KAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTNDFVNALRNNKMEEFKEK--- 196 (405)
T ss_pred HHHHHHHHHhCcC-ccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHHHHHHHHHcCCHHHHHHH---
Confidence 4444555544443 345679999999999999999999986 6778888887665322111000000112111
Q ss_pred HHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-CCC---CCcc
Q 011983 216 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFS---TLYA 291 (473)
Q Consensus 216 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~~~---~Ld~ 291 (473)
-..+.+|+|||+|.+.++.. . ...+..++..+.+ .+..+|+|+| .|. .+++
T Consensus 197 --~~~~dlLiiDDi~~l~~~~~--~-----~~~l~~~~n~~~~----------------~~~~iiits~~~p~~l~~l~~ 251 (405)
T TIGR00362 197 --YRSVDLLLIDDIQFLAGKER--T-----QEEFFHTFNALHE----------------NGKQIVLTSDRPPKELPGLEE 251 (405)
T ss_pred --HHhCCEEEEehhhhhcCCHH--H-----HHHHHHHHHHHHH----------------CCCCEEEecCCCHHHHhhhhh
Confidence 12367999999998865421 1 1223333322222 2234555555 344 3567
Q ss_pred ccccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchhhHHHH
Q 011983 292 PLIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGAL 347 (473)
Q Consensus 292 aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~f~gal 347 (473)
.|.+ ||.. .+. .|+.++|..|++..+.. ..++.+.+..+++.+.+.--...|++
T Consensus 252 ~l~S--Rl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~~~r~l~~~l 311 (405)
T TIGR00362 252 RLRS--RFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRSNVRELEGAL 311 (405)
T ss_pred hhhh--hccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCCHHHHHHHH
Confidence 8888 8864 334 59999999999988765 45677777888887766544444444
No 89
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.31 E-value=2.1e-11 Score=131.71 Aligned_cols=169 Identities=15% Similarity=0.201 Sum_probs=108.2
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++- ..++...++.+.. .+.|..+|||||||||||++|+++|+.++..
T Consensus 14 ~f~divGq---------~~v~~~L~~~~~~--~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 82 (509)
T PRK14958 14 CFQEVIGQ---------APVVRALSNALDQ--QYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREI 82 (509)
T ss_pred CHHHhcCC---------HHHHHHHHHHHHh--CCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHH
Confidence 37777764 2233344444433 3678899999999999999999999997542
Q ss_pred -------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 185 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 185 -------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
++.++++. ......+|++.+.+...-..++..|+||||+|.+... ..+.|+..+
T Consensus 83 ~~g~~~d~~eidaas------~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls~~-------------a~naLLk~L 143 (509)
T PRK14958 83 DEGRFPDLFEVDAAS------RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLSGH-------------SFNALLKTL 143 (509)
T ss_pred hcCCCceEEEEcccc------cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcCHH-------------HHHHHHHHH
Confidence 33333321 1123446666654431111455679999999977432 224566655
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~ 334 (473)
+ +..+++.+|++|+++..+.+.+++ |+..+-+ .++.++-...++.++...++ +.+.+..++.
T Consensus 144 E-------------epp~~~~fIlattd~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~ 208 (509)
T PRK14958 144 E-------------EPPSHVKFILATTDHHKLPVTVLS--RCLQFHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLAR 208 (509)
T ss_pred h-------------ccCCCeEEEEEECChHhchHHHHH--HhhhhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 455678888888999999999988 7754444 35677777777777765544 4444444444
Q ss_pred c
Q 011983 335 T 335 (473)
Q Consensus 335 ~ 335 (473)
.
T Consensus 209 ~ 209 (509)
T PRK14958 209 A 209 (509)
T ss_pred H
Confidence 4
No 90
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.30 E-value=3.7e-11 Score=128.73 Aligned_cols=171 Identities=16% Similarity=0.248 Sum_probs=113.6
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-------------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG------------------- 182 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg------------------- 182 (473)
+|+++++- ..++...++.+.. .+.|..+||+||||+|||++|+.+|+.+.
T Consensus 11 ~f~dliGQ---------e~vv~~L~~a~~~--~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i 79 (491)
T PRK14964 11 SFKDLVGQ---------DVLVRILRNAFTL--NKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISI 79 (491)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHH
Confidence 37666654 2233344444433 26788999999999999999999999753
Q ss_pred -----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 183 -----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 183 -----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
..++.+++++- .....+|.+.+.+...--.....|+||||+|.+.. ...+.|+..+
T Consensus 80 ~~~~~~Dv~eidaas~------~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls~-------------~A~NaLLK~L 140 (491)
T PRK14964 80 KNSNHPDVIEIDAASN------TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLSN-------------SAFNALLKTL 140 (491)
T ss_pred hccCCCCEEEEecccC------CCHHHHHHHHHHHHhccccCCceEEEEeChHhCCH-------------HHHHHHHHHH
Confidence 23345554321 12456777776654221145678999999987632 1234566655
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
+ +..+.+.+|++|+.++.|.+.+++ |+..+-+ .++.++....++.++...+ ++.+.+..++.
T Consensus 141 E-------------ePp~~v~fIlatte~~Kl~~tI~S--Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~ 205 (491)
T PRK14964 141 E-------------EPAPHVKFILATTEVKKIPVTIIS--RCQRFDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAE 205 (491)
T ss_pred h-------------CCCCCeEEEEEeCChHHHHHHHHH--hheeeecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 556778888888889999999998 7766555 4788888888888877654 45556655555
Q ss_pred cCC
Q 011983 335 TFP 337 (473)
Q Consensus 335 ~~s 337 (473)
...
T Consensus 206 ~s~ 208 (491)
T PRK14964 206 NSS 208 (491)
T ss_pred HcC
Confidence 543
No 91
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.30 E-value=5.2e-12 Score=125.64 Aligned_cols=164 Identities=17% Similarity=0.256 Sum_probs=103.4
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------CcEEecccccccCCCCChHHHHH---HHHH
Q 011983 140 VVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------NPIMMSAGELESGNAGEPAKLIR---QRYR 210 (473)
Q Consensus 140 ~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~------~~i~vs~s~l~s~~~Ge~~~~ir---~~f~ 210 (473)
.++...++-+.. +.-..+|||||||||||+.|+++|+++.- .+...+.+.-.+.- .++ +-|.
T Consensus 43 ~vV~~L~~a~~~---~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis------vvr~Kik~fa 113 (346)
T KOG0989|consen 43 HVVQVLKNALLR---RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS------VVREKIKNFA 113 (346)
T ss_pred HHHHHHHHHHhh---cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc------chhhhhcCHH
Confidence 345555554433 34457999999999999999999999754 11222333222111 222 2233
Q ss_pred HHHHHHH--cCC---c-eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC
Q 011983 211 EAADIIK--KGK---M-CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 284 (473)
Q Consensus 211 ~A~~~~~--~~~---p-~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN 284 (473)
+.....+ ... | .||+|||+|.+... ...+|...++ .....+.+|..||
T Consensus 114 kl~~~~~~~~~~~~~~fKiiIlDEcdsmtsd-------------aq~aLrr~mE-------------~~s~~trFiLIcn 167 (346)
T KOG0989|consen 114 KLTVLLKRSDGYPCPPFKIIILDECDSMTSD-------------AQAALRRTME-------------DFSRTTRFILICN 167 (346)
T ss_pred HHhhccccccCCCCCcceEEEEechhhhhHH-------------HHHHHHHHHh-------------ccccceEEEEEcC
Confidence 3222221 122 2 69999999987543 2366777666 4467788999999
Q ss_pred CCCCCccccccCCCceEEEec-CCHHHHHHHHHhhcCCCCCCH--HHHHHHHhcCCCCch
Q 011983 285 DFSTLYAPLIRDGRMEKFYWA-PTREDRIGVCSGIFRTDNVPK--EDIVKLVDTFPGQSI 341 (473)
Q Consensus 285 ~~~~Ld~aLlR~GRfd~~i~~-P~~eeR~~Il~~~l~~~~v~~--~~l~~l~~~~sga~l 341 (473)
..+.|+.++.+ |..++.+- ...+.....|+.+..+++++. +.+..++.. ++.++
T Consensus 168 ylsrii~pi~S--RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~-S~GdL 224 (346)
T KOG0989|consen 168 YLSRIIRPLVS--RCQKFRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKI-SDGDL 224 (346)
T ss_pred ChhhCChHHHh--hHHHhcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHH-cCCcH
Confidence 99999999999 99888883 345566677788887766554 444444433 33344
No 92
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=3.8e-11 Score=132.18 Aligned_cols=168 Identities=14% Similarity=0.174 Sum_probs=110.0
Q ss_pred hhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------ 184 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------ 184 (473)
|+++++- ..++..+++.+.. .+.|..+||+||||||||++|+++|+.++..
T Consensus 15 FddIIGQ---------e~vv~~L~~ai~~--~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr~i~ 83 (709)
T PRK08691 15 FADLVGQ---------EHVVKALQNALDE--GRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCTQID 83 (709)
T ss_pred HHHHcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHHHHh
Confidence 7666654 2233344444443 3678899999999999999999999997542
Q ss_pred ------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhc
Q 011983 185 ------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258 (473)
Q Consensus 185 ------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld 258 (473)
++.++.. .+.....+|.++..+...-...+..||||||+|.+.. ...+.|+..++
T Consensus 84 ~g~~~DvlEidaA------s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~-------------~A~NALLKtLE 144 (709)
T PRK08691 84 AGRYVDLLEIDAA------SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSK-------------SAFNAMLKTLE 144 (709)
T ss_pred ccCccceEEEecc------ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCH-------------HHHHHHHHHHH
Confidence 1112111 1122356777776553211135568999999986532 12245666555
Q ss_pred CCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 259 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 259 ~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
+...++.+|++||++..+.+.+++ |+-.+-+ .++.++-...++.++...++ +.+.+..++..
T Consensus 145 -------------EPp~~v~fILaTtd~~kL~~TIrS--RC~~f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~ 209 (709)
T PRK08691 145 -------------EPPEHVKFILATTDPHKVPVTVLS--RCLQFVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRA 209 (709)
T ss_pred -------------hCCCCcEEEEEeCCccccchHHHH--HHhhhhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Confidence 445678899999999999999887 8755444 57888888899888887654 44455555544
No 93
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.30 E-value=5.3e-11 Score=130.09 Aligned_cols=169 Identities=14% Similarity=0.190 Sum_probs=111.3
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI------------------ 183 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------ 183 (473)
+|+++.+- + .+....++.+.. .+.+..+|||||+|||||++|+.+|+.+..
T Consensus 14 ~f~~viGq----~-----~v~~~L~~~i~~--~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~i 82 (559)
T PRK05563 14 TFEDVVGQ----E-----HITKTLKNAIKQ--GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKAI 82 (559)
T ss_pred cHHhccCc----H-----HHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHHH
Confidence 37777764 2 222233333332 357889999999999999999999999642
Q ss_pred ------CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 184 ------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 184 ------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
+++.++++. +.....+|++...+...-......|+||||+|.+... ..+.|+..+
T Consensus 83 ~~g~~~dv~eidaas------~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~-------------a~naLLKtL 143 (559)
T PRK05563 83 TNGSLMDVIEIDAAS------NNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTG-------------AFNALLKTL 143 (559)
T ss_pred hcCCCCCeEEeeccc------cCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHH-------------HHHHHHHHh
Confidence 233333321 2234567777776642222455679999999977321 234566655
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
+ +...++.+|++|+.++.|++.+++ |+..+-+ .|+.++....++.++...+ ++.+.+..++.
T Consensus 144 E-------------epp~~~ifIlatt~~~ki~~tI~S--Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~ 208 (559)
T PRK05563 144 E-------------EPPAHVIFILATTEPHKIPATILS--RCQRFDFKRISVEDIVERLKYILDKEGIEYEDEALRLIAR 208 (559)
T ss_pred c-------------CCCCCeEEEEEeCChhhCcHHHHh--HheEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 5 445677788888889999999988 7766555 5788888888888887655 45455554444
Q ss_pred c
Q 011983 335 T 335 (473)
Q Consensus 335 ~ 335 (473)
.
T Consensus 209 ~ 209 (559)
T PRK05563 209 A 209 (559)
T ss_pred H
Confidence 4
No 94
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.29 E-value=1.4e-11 Score=127.18 Aligned_cols=143 Identities=20% Similarity=0.286 Sum_probs=109.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
..|||.||.|+|||+||+.+|+-+++||...++..|.. +|+|+ -+..|.+++..|..-.++.+-.|+||||+|++...
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 46888899999999999999999999999999999875 89998 45678888888876666788889999999999854
Q ss_pred -CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcc---------cCCCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011983 236 -MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN---------QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304 (473)
Q Consensus 236 -r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~---------~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~ 304 (473)
.+-+...++...-|++.|+.|++ .+-|.++..-. +.+..++++|+.. -+..||.-+-| |++....
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllE-GtvVnVpeK~~~~~~rgd~vqiDTtnILFiasG-AF~~Ldk~I~r--R~~d~sl 381 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLE-GTVVNVPEKGSRRKPRGDTVQIDTTNILFIASG-AFVGLDKIISR--RLDDKSL 381 (564)
T ss_pred CccccccccccchhHHHHHHHHhc-ccEEcccCCCCCCCCCCCeEEEeccceEEEecc-cccchHHHHHH--hhcchhc
Confidence 33233457778899999999887 77777754321 1223444444433 44568888888 8877665
No 95
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.29 E-value=5e-11 Score=128.44 Aligned_cols=148 Identities=16% Similarity=0.178 Sum_probs=100.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC----------------------------cEEecccccccCCCCChHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------------------PIMMSAGELESGNAGEPAKLIR 206 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------------------~i~vs~s~l~s~~~Ge~~~~ir 206 (473)
+.|..+||+||||||||++|+++|+.++.. ++.+++. .......++
T Consensus 41 ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C~~C~~i~~~~h~Dv~eidaa------s~~~vd~Ir 114 (507)
T PRK06645 41 RLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQCTNCISFNNHNHPDIIEIDAA------SKTSVDDIR 114 (507)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCChHHHHHhcCCCCcEEEeecc------CCCCHHHHH
Confidence 678899999999999999999999997542 1111111 012345677
Q ss_pred HHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 207 QRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 207 ~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
.+++.+...--.....|+||||+|.+.. .....|+..++ +..+.+.+|++|+.+
T Consensus 115 ~iie~a~~~P~~~~~KVvIIDEa~~Ls~-------------~a~naLLk~LE-------------epp~~~vfI~aTte~ 168 (507)
T PRK06645 115 RIIESAEYKPLQGKHKIFIIDEVHMLSK-------------GAFNALLKTLE-------------EPPPHIIFIFATTEV 168 (507)
T ss_pred HHHHHHHhccccCCcEEEEEEChhhcCH-------------HHHHHHHHHHh-------------hcCCCEEEEEEeCCh
Confidence 7777664221134567999999987632 12244555444 456777888888888
Q ss_pred CCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhcC
Q 011983 287 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDTF 336 (473)
Q Consensus 287 ~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~~ 336 (473)
+.+++++++ |+..+-+ .++.++...+++.++...++ +.+.+..++...
T Consensus 169 ~kI~~tI~S--Rc~~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s 219 (507)
T PRK06645 169 QKIPATIIS--RCQRYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKS 219 (507)
T ss_pred HHhhHHHHh--cceEEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 999999998 7754433 58899999999988876554 555555555543
No 96
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.6e-11 Score=129.05 Aligned_cols=169 Identities=12% Similarity=0.179 Sum_probs=109.0
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++. ..++..+++++.. .+.|..+|||||+|||||++|+++|+.++..
T Consensus 14 ~f~dviGQ---------e~vv~~L~~~l~~--~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~C~ 82 (618)
T PRK14951 14 SFSEMVGQ---------EHVVQALTNALTQ--QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGVCQ 82 (618)
T ss_pred CHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCccH
Confidence 37777754 2334445555443 2678899999999999999999999997531
Q ss_pred ------------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHH
Q 011983 185 ------------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT 252 (473)
Q Consensus 185 ------------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~ 252 (473)
++.+++.. ......+|++.+.+...-..++..|+||||+|.+... ..+.
T Consensus 83 ~C~~i~~g~h~D~~eldaas------~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~-------------a~Na 143 (618)
T PRK14951 83 ACRDIDSGRFVDYTELDAAS------NRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNT-------------AFNA 143 (618)
T ss_pred HHHHHHcCCCCceeecCccc------ccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHH-------------HHHH
Confidence 22222211 0123456666665431111344579999999977432 1244
Q ss_pred HHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHH
Q 011983 253 LMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDI 329 (473)
Q Consensus 253 Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l 329 (473)
|+..++ +....+.+|++|+++..+.+.+++ |+..+-+ .++.++....++.++...++ +.+.+
T Consensus 144 LLKtLE-------------EPP~~~~fIL~Ttd~~kil~TIlS--Rc~~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL 208 (618)
T PRK14951 144 MLKTLE-------------EPPEYLKFVLATTDPQKVPVTVLS--RCLQFNLRPMAPETVLEHLTQVLAAENVPAEPQAL 208 (618)
T ss_pred HHHhcc-------------cCCCCeEEEEEECCchhhhHHHHH--hceeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHH
Confidence 555454 456777888888889999989988 8755544 46788888888888766554 44445
Q ss_pred HHHHhc
Q 011983 330 VKLVDT 335 (473)
Q Consensus 330 ~~l~~~ 335 (473)
..++..
T Consensus 209 ~~La~~ 214 (618)
T PRK14951 209 RLLARA 214 (618)
T ss_pred HHHHHH
Confidence 555544
No 97
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.29 E-value=8.9e-11 Score=128.40 Aligned_cols=158 Identities=10% Similarity=0.115 Sum_probs=104.3
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++. ..++..+++++.. .+.|..+|||||+|||||++|+++|+.+...
T Consensus 11 ~f~eivGq---------~~i~~~L~~~i~~--~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i 79 (584)
T PRK14952 11 TFAEVVGQ---------EHVTEPLSSALDA--GRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVAL 79 (584)
T ss_pred cHHHhcCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHHh
Confidence 37777764 2334445555543 3678889999999999999999999986531
Q ss_pred ---------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHH
Q 011983 185 ---------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMN 255 (473)
Q Consensus 185 ---------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ 255 (473)
++.++++.. ..-..+|++.+.+...-......|+||||+|.+... ..+.|+.
T Consensus 80 ~~~~~~~~dvieidaas~------~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~-------------A~NALLK 140 (584)
T PRK14952 80 APNGPGSIDVVELDAASH------GGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTA-------------GFNALLK 140 (584)
T ss_pred hcccCCCceEEEeccccc------cCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHH-------------HHHHHHH
Confidence 222222111 123456666555432111455679999999977321 3355666
Q ss_pred hhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC
Q 011983 256 IADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV 324 (473)
Q Consensus 256 lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v 324 (473)
.++ +...++.+|++|+.++.|.++|++ |...+-+ .++.++..+.+..++...++
T Consensus 141 ~LE-------------Epp~~~~fIL~tte~~kll~TI~S--Rc~~~~F~~l~~~~i~~~L~~i~~~egi 195 (584)
T PRK14952 141 IVE-------------EPPEHLIFIFATTEPEKVLPTIRS--RTHHYPFRLLPPRTMRALIARICEQEGV 195 (584)
T ss_pred HHh-------------cCCCCeEEEEEeCChHhhHHHHHH--hceEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 555 556788888888888999999998 7654444 57788888888887776553
No 98
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.28 E-value=2.2e-11 Score=123.91 Aligned_cols=143 Identities=15% Similarity=0.130 Sum_probs=99.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccC--CCCChHHHH----------HHHHHHHHHHHHcCCceEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG--NAGEPAKLI----------RQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~--~~Ge~~~~i----------r~~f~~A~~~~~~~~p~IL 224 (473)
.+.|||.||||||||++++.+|+.++.+++.++++...+. ++|...-.+ ...+-.| ...+++|
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A-----~~~g~il 138 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWA-----LQHNVAL 138 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhH-----HhCCeEE
Confidence 3569999999999999999999999999999988765554 455432111 1123333 3467899
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc-CCCCCceEEEecCCCC------------CCcc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDFS------------TLYA 291 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~-~~~~~V~VIaTTN~~~------------~Ld~ 291 (473)
++||+|..-+ .+...|..+++....+.+++.... ...+...||+|+|... .|++
T Consensus 139 llDEin~a~p-------------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~ 205 (327)
T TIGR01650 139 CFDEYDAGRP-------------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQ 205 (327)
T ss_pred EechhhccCH-------------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCH
Confidence 9999997633 233556666665444444432111 2335678999999864 4688
Q ss_pred ccccCCCceEEEe--cCCHHHHHHHHHhhc
Q 011983 292 PLIRDGRMEKFYW--APTREDRIGVCSGIF 319 (473)
Q Consensus 292 aLlR~GRfd~~i~--~P~~eeR~~Il~~~l 319 (473)
+++. ||-..+. .|+.++-.+|+....
T Consensus 206 A~lD--RF~i~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 206 AQMD--RWSIVTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred HHHh--heeeEeeCCCCCHHHHHHHHHhhc
Confidence 9999 9977665 699999999987654
No 99
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.28 E-value=1e-10 Score=130.11 Aligned_cols=153 Identities=14% Similarity=0.182 Sum_probs=95.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccccCC----------------CC-ChHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGN----------------AG-EPAKLIRQRY 209 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s~~----------------~G-e~~~~ir~~f 209 (473)
...++|||+||||||++++.+.+++ .+.+++++|..+...+ .| .....+..+|
T Consensus 781 nnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF 860 (1164)
T PTZ00112 781 NQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLF 860 (1164)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHH
Confidence 3456799999999999999998875 2556788885433211 01 1223444445
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC---C
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND---F 286 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~---~ 286 (473)
.... -......||+|||||.+..+. + ..|.+|++ |......++.||+++|. +
T Consensus 861 ~~L~--k~~r~v~IIILDEID~L~kK~----------Q---DVLYnLFR----------~~~~s~SKLiLIGISNdlDLp 915 (1164)
T PTZ00112 861 NQNK--KDNRNVSILIIDEIDYLITKT----------Q---KVLFTLFD----------WPTKINSKLVLIAISNTMDLP 915 (1164)
T ss_pred hhhh--cccccceEEEeehHhhhCccH----------H---HHHHHHHH----------HhhccCCeEEEEEecCchhcc
Confidence 4321 013346799999999987531 1 33445444 33344567899999986 5
Q ss_pred CCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHh
Q 011983 287 STLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDIVKLVD 334 (473)
Q Consensus 287 ~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~ 334 (473)
+.|++.+.+..++.++.+ .++.+++.+||+..+.. .-++.+.+..+++
T Consensus 916 erLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIAr 966 (1164)
T PTZ00112 916 ERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCAR 966 (1164)
T ss_pred hhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHH
Confidence 567788888333333444 57999999999977653 2345554443333
No 100
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.27 E-value=8.7e-11 Score=133.93 Aligned_cols=162 Identities=14% Similarity=0.178 Sum_probs=103.6
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCCcE-EEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc------------CC
Q 011983 134 PAFMDKVVVHITKNFLNLPNVKVPLI-LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------GN 197 (473)
Q Consensus 134 ~~~~d~~~~~i~k~~l~~~~~~~p~g-lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s------------~~ 197 (473)
+..++.+..++.+....+.....|.+ +||+||||+|||.+|+++|+.+ ...++.++++++.. +|
T Consensus 572 ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gy 651 (852)
T TIGR03345 572 DHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGY 651 (852)
T ss_pred HHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCc
Confidence 33444444444443333333356775 8999999999999999999997 45778888766532 24
Q ss_pred CCChHH-HHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCC
Q 011983 198 AGEPAK-LIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276 (473)
Q Consensus 198 ~Ge~~~-~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~ 276 (473)
+|..+. .+...+ ++..++||+|||||++.+ .+...|++++++.....-.| ......+
T Consensus 652 vg~~~~g~L~~~v-------~~~p~svvllDEieka~~-------------~v~~~Llq~ld~g~l~d~~G--r~vd~~n 709 (852)
T TIGR03345 652 VGYGEGGVLTEAV-------RRKPYSVVLLDEVEKAHP-------------DVLELFYQVFDKGVMEDGEG--REIDFKN 709 (852)
T ss_pred ccccccchHHHHH-------HhCCCcEEEEechhhcCH-------------HHHHHHHHHhhcceeecCCC--cEEeccc
Confidence 443221 222222 267789999999996532 35577888888543322222 2234578
Q ss_pred ceEEEecCCCC-----------------------------CCccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 277 VPIIVTGNDFS-----------------------------TLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 277 V~VIaTTN~~~-----------------------------~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
.+||+|||... .+.|+|+. |++.+.+ ..+.++..+|+...+
T Consensus 710 ~iiI~TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEfln--Ri~iI~F~pLs~e~l~~Iv~~~L 780 (852)
T TIGR03345 710 TVILLTSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLG--RMTVIPYLPLDDDVLAAIVRLKL 780 (852)
T ss_pred cEEEEeCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhc--ceeEEEeCCCCHHHHHHHHHHHH
Confidence 99999998521 15677777 8884444 368888888887555
No 101
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.2e-10 Score=125.82 Aligned_cols=145 Identities=12% Similarity=0.183 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------------cEEecccccccCCCCChHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----------------------PIMMSAGELESGNAGEPAKLIRQRYRE 211 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~-----------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~~ 211 (473)
+.|..+|||||||||||++|+++|+.+... ++.++++. ......+|++.+.
T Consensus 34 ~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i~~~~h~dv~el~~~~------~~~vd~iR~l~~~ 107 (504)
T PRK14963 34 RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAVRRGAHPDVLEIDAAS------NNSVEDVRDLREK 107 (504)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHHhcCCCCceEEecccc------cCCHHHHHHHHHH
Confidence 577888999999999999999999997431 23333221 1123456665444
Q ss_pred HHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
+...--...+.||||||+|.+.. .....|+..++ +...++.+|++||.+..+++
T Consensus 108 ~~~~p~~~~~kVVIIDEad~ls~-------------~a~naLLk~LE-------------ep~~~t~~Il~t~~~~kl~~ 161 (504)
T PRK14963 108 VLLAPLRGGRKVYILDEAHMMSK-------------SAFNALLKTLE-------------EPPEHVIFILATTEPEKMPP 161 (504)
T ss_pred HhhccccCCCeEEEEECccccCH-------------HHHHHHHHHHH-------------hCCCCEEEEEEcCChhhCCh
Confidence 43111135678999999985521 12234555444 44567788888899999999
Q ss_pred ccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHH
Q 011983 292 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLV 333 (473)
Q Consensus 292 aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~ 333 (473)
.+++ |+..+-+ .|+.++....++.++...++ +.+.+..++
T Consensus 162 ~I~S--Rc~~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia 204 (504)
T PRK14963 162 TILS--RTQHFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVA 204 (504)
T ss_pred HHhc--ceEEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9998 7765444 58899998888888876554 444444443
No 102
>PRK06893 DNA replication initiation factor; Validated
Probab=99.27 E-value=2.3e-11 Score=118.51 Aligned_cols=149 Identities=16% Similarity=0.157 Sum_probs=89.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..++||||||||||+|++++|+++ +....+++..... .....+++. -.+..+|+|||++.+.+
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------~~~~dlLilDDi~~~~~ 105 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ--------YFSPAVLEN------LEQQDLVCLDDLQAVIG 105 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh--------hhhHHHHhh------cccCCEEEEeChhhhcC
Confidence 368999999999999999999985 3344444433211 011112221 22467999999998865
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec-CCCCCCc---cccccCCCceEEEe--cCCH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-NDFSTLY---APLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT-N~~~~Ld---~aLlR~GRfd~~i~--~P~~ 308 (473)
... ....|.++++ ...+ ....++|.|+ ..|..++ +.|.++.++...+. .|+.
T Consensus 106 ~~~-----------~~~~l~~l~n----------~~~~-~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~~l~~pd~ 163 (229)
T PRK06893 106 NEE-----------WELAIFDLFN----------RIKE-QGKTLLLISADCSPHALSIKLPDLASRLTWGEIYQLNDLTD 163 (229)
T ss_pred ChH-----------HHHHHHHHHH----------HHHH-cCCcEEEEeCCCChHHccccchhHHHHHhcCCeeeCCCCCH
Confidence 321 0112333333 0101 2223344444 4566554 78988444445555 5999
Q ss_pred HHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchh
Q 011983 309 EDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 309 eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~ 342 (473)
++|.+|++..+.. -.++.+.+.-++..+++.--.
T Consensus 164 e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~d~r~ 199 (229)
T PRK06893 164 EQKIIVLQRNAYQRGIELSDEVANFLLKRLDRDMHT 199 (229)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 9999999977654 456777777777776655433
No 103
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.27 E-value=1.4e-10 Score=125.76 Aligned_cols=147 Identities=14% Similarity=0.193 Sum_probs=97.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+.+|+.+.. .++.+++.. ..| ...++++.+
T Consensus 36 rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dlieidaas----~~g--vd~ir~ii~ 109 (546)
T PRK14957 36 KVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDLIEIDAAS----RTG--VEETKEILD 109 (546)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCceEEeeccc----ccC--HHHHHHHHH
Confidence 67888999999999999999999998753 222222211 111 234566666
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......|+||||+|.+.. ...+.|+..++ +....+.+|++|+++..+.
T Consensus 110 ~~~~~p~~g~~kViIIDEa~~ls~-------------~a~naLLK~LE-------------epp~~v~fIL~Ttd~~kil 163 (546)
T PRK14957 110 NIQYMPSQGRYKVYLIDEVHMLSK-------------QSFNALLKTLE-------------EPPEYVKFILATTDYHKIP 163 (546)
T ss_pred HHHhhhhcCCcEEEEEechhhccH-------------HHHHHHHHHHh-------------cCCCCceEEEEECChhhhh
Confidence 554322245678999999987632 12356666665 4456777887778888898
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
+.|++ |+..+-+ .++.++-...++.++...++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~ 209 (546)
T PRK14957 164 VTILS--RCIQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYH 209 (546)
T ss_pred hhHHH--heeeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888 7755554 57788888888877765544 44444544443
No 104
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.27 E-value=4e-11 Score=121.95 Aligned_cols=151 Identities=15% Similarity=0.197 Sum_probs=94.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEecccccccCC-------------CCC-------hHHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGN-------------AGE-------PAKLIRQRYREAA 213 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s~~-------------~Ge-------~~~~ir~~f~~A~ 213 (473)
++|||||||||||++|+++++++. .+++.++++++.... .+. ....++.+.+...
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 117 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYA 117 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHH
Confidence 689999999999999999999973 356777776543211 010 0122333332222
Q ss_pred HHHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccc
Q 011983 214 DIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292 (473)
Q Consensus 214 ~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~a 292 (473)
.... ...+.+|+|||+|.+... ..+.|..+++ .......+|++|+.+..+.++
T Consensus 118 ~~~~~~~~~~vlilDe~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~Il~~~~~~~~~~~ 171 (337)
T PRK12402 118 SYRPLSADYKTILLDNAEALRED-------------AQQALRRIME-------------QYSRTCRFIIATRQPSKLIPP 171 (337)
T ss_pred hcCCCCCCCcEEEEeCcccCCHH-------------HHHHHHHHHH-------------hccCCCeEEEEeCChhhCchh
Confidence 1111 134569999999976321 1234555444 223345577777777788888
Q ss_pred cccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 293 LIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 293 LlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
|.+ |+..... .|+.++...+++.++...+ ++.+.+..++...+
T Consensus 172 L~s--r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~ 217 (337)
T PRK12402 172 IRS--RCLPLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAG 217 (337)
T ss_pred hcC--CceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 888 6644433 5899999999998876644 56677777777653
No 105
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.26 E-value=3.4e-11 Score=131.24 Aligned_cols=160 Identities=19% Similarity=0.178 Sum_probs=105.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
.++|||++|+|||+|+.+||+++ +..++++++.++...+...........|.+. -..+.+|+||||+.+.
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~-----y~~~DLLlIDDIq~l~ 390 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRR-----YREMDILLVDDIQFLE 390 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHH-----hhcCCEEEEehhcccc
Confidence 48999999999999999999985 5678888887776443221111111123322 2357899999999887
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC----CCCccccccCCCceEEE--e--c
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF----STLYAPLIRDGRMEKFY--W--A 305 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~----~~Ld~aLlR~GRfd~~i--~--~ 305 (473)
++.. ....+..++..+.+ .+..||+|+|.+ ..|++.|++ ||..-+ . .
T Consensus 391 gke~-------tqeeLF~l~N~l~e----------------~gk~IIITSd~~P~eL~~l~~rL~S--Rf~~GLvv~I~~ 445 (617)
T PRK14086 391 DKES-------TQEEFFHTFNTLHN----------------ANKQIVLSSDRPPKQLVTLEDRLRN--RFEWGLITDVQP 445 (617)
T ss_pred CCHH-------HHHHHHHHHHHHHh----------------cCCCEEEecCCChHhhhhccHHHHh--hhhcCceEEcCC
Confidence 5421 11233333333222 234577788765 357888999 776543 3 4
Q ss_pred CCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCCCchhhHHHHH
Q 011983 306 PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGALR 348 (473)
Q Consensus 306 P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~f~gal~ 348 (473)
|+.+.|.+||+..+... .++.+.+.-|+.+++..--...|++.
T Consensus 446 PD~EtR~aIL~kka~~r~l~l~~eVi~yLa~r~~rnvR~LegaL~ 490 (617)
T PRK14086 446 PELETRIAILRKKAVQEQLNAPPEVLEFIASRISRNIRELEGALI 490 (617)
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhccCCHHHHHHHHH
Confidence 99999999999888764 45666777788887766445554443
No 106
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.26 E-value=3.7e-11 Score=104.75 Aligned_cols=128 Identities=20% Similarity=0.234 Sum_probs=79.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
....++++||||||||++++.+++.+ +.+++.+++.+.............. .+...........+.+|+|||++.+
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~lilDe~~~~ 96 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHF-LVRLLFELAEKAKPGVLFIDEIDSL 96 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhh-hHhHHHHhhccCCCeEEEEeChhhh
Confidence 45689999999999999999999998 8889988887665432211111000 0011111222567899999999977
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC--CCccccccCCCceEEEecC
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYWAP 306 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~--~Ld~aLlR~GRfd~~i~~P 306 (473)
... ....++.++.. +.. +. ....++.+|+++|... .+++.+.+ ||+..+.+|
T Consensus 97 ~~~-------------~~~~~~~~i~~-----~~~-~~-~~~~~~~ii~~~~~~~~~~~~~~~~~--r~~~~i~~~ 150 (151)
T cd00009 97 SRG-------------AQNALLRVLET-----LND-LR-IDRENVRVIGATNRPLLGDLDRALYD--RLDIRIVIP 150 (151)
T ss_pred hHH-------------HHHHHHHHHHh-----cCc-ee-ccCCCeEEEEecCccccCCcChhHHh--hhccEeecC
Confidence 211 11223332220 000 00 1246789999999887 67888888 998776654
No 107
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=1.1e-10 Score=133.21 Aligned_cols=165 Identities=16% Similarity=0.172 Sum_probs=106.2
Q ss_pred ChhhHHHHHHHHHHhhhcCCCCCCCc-EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc------------C
Q 011983 133 APAFMDKVVVHITKNFLNLPNVKVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES------------G 196 (473)
Q Consensus 133 ~~~~~d~~~~~i~k~~l~~~~~~~p~-glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s------------~ 196 (473)
-+..+..+...+.+....+.....|. .+||+||+|||||++|+++|+.+ +.+++.++.+++.. +
T Consensus 514 Q~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l~g~~~g 593 (821)
T CHL00095 514 QDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKLIGSPPG 593 (821)
T ss_pred hHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHhcCCCCc
Confidence 34455555555555554444445565 47999999999999999999996 46788888776532 1
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCC
Q 011983 197 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276 (473)
Q Consensus 197 ~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~ 276 (473)
|+|-.+. ..+.+.. +....+||+|||+|++.+ .+...|++++++.....-.|. .....+
T Consensus 594 yvg~~~~--~~l~~~~----~~~p~~VvllDeieka~~-------------~v~~~Llq~le~g~~~d~~g~--~v~~~~ 652 (821)
T CHL00095 594 YVGYNEG--GQLTEAV----RKKPYTVVLFDEIEKAHP-------------DIFNLLLQILDDGRLTDSKGR--TIDFKN 652 (821)
T ss_pred ccCcCcc--chHHHHH----HhCCCeEEEECChhhCCH-------------HHHHHHHHHhccCceecCCCc--EEecCc
Confidence 3332211 1122222 255568999999997642 356788888886544432222 234578
Q ss_pred ceEEEecCCCCC-------------------------------------CccccccCCCceEEEe--cCCHHHHHHHHHh
Q 011983 277 VPIIVTGNDFST-------------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSG 317 (473)
Q Consensus 277 V~VIaTTN~~~~-------------------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~ 317 (473)
.+||+|||.... +.|+|+. |+|.++. ..+.++..+|+..
T Consensus 653 ~i~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~pefln--Rid~ii~F~pL~~~~l~~Iv~~ 730 (821)
T CHL00095 653 TLIIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLN--RLDEIIVFRQLTKNDVWEIAEI 730 (821)
T ss_pred eEEEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhc--cCCeEEEeCCCCHHHHHHHHHH
Confidence 999999985321 2345677 8987766 3688888888775
Q ss_pred hcC
Q 011983 318 IFR 320 (473)
Q Consensus 318 ~l~ 320 (473)
.+.
T Consensus 731 ~l~ 733 (821)
T CHL00095 731 MLK 733 (821)
T ss_pred HHH
Confidence 554
No 108
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.26 E-value=9.5e-11 Score=120.27 Aligned_cols=149 Identities=15% Similarity=0.206 Sum_probs=99.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+++++.+... ++.+++.. ......++++++
T Consensus 34 ~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~~~~~~~~------~~~~~~~~~l~~ 107 (355)
T TIGR02397 34 RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDVIEIDAAS------NNGVDDIREILD 107 (355)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEeeccc------cCCHHHHHHHHH
Confidence 567899999999999999999999996421 22222221 122345677777
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......||+|||+|.+... ....|+..++ +...++.+|++||+++.|.
T Consensus 108 ~~~~~p~~~~~~vviidea~~l~~~-------------~~~~Ll~~le-------------~~~~~~~lIl~~~~~~~l~ 161 (355)
T TIGR02397 108 NVKYAPSSGKYKVYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPEHVVFILATTEPHKIP 161 (355)
T ss_pred HHhcCcccCCceEEEEeChhhcCHH-------------HHHHHHHHHh-------------CCccceeEEEEeCCHHHHH
Confidence 6541111344569999999977321 1234555444 3346677888889999899
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
+++++ |+..+-+ .|+.++..++++.++...+ ++.+.+..+++...
T Consensus 162 ~~l~s--r~~~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~ 209 (355)
T TIGR02397 162 ATILS--RCQRFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAAD 209 (355)
T ss_pred HHHHh--heeEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcC
Confidence 99988 7755444 4789999999998887654 56666666665543
No 109
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.26 E-value=7.8e-11 Score=122.82 Aligned_cols=155 Identities=14% Similarity=0.216 Sum_probs=93.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEeccccccc----------CCCC----ChHHHHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELES----------GNAG----EPAKLIRQRYREAADI 215 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s----------~~~G----e~~~~ir~~f~~A~~~ 215 (473)
..|..++||||||||||++++.+++++ ++.++++++....+ ...+ .......++++...+.
T Consensus 53 ~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~ 132 (394)
T PRK00411 53 SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEY 132 (394)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHH
Confidence 456678999999999999999999986 57788888754321 1111 0011122333333333
Q ss_pred HH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC---CCcc
Q 011983 216 IK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYA 291 (473)
Q Consensus 216 ~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~---~Ld~ 291 (473)
++ ...+.||+|||+|.+..+.. . .+...|+.+.+ .....++.+|+++|..+ .+++
T Consensus 133 l~~~~~~~viviDE~d~l~~~~~---~------~~l~~l~~~~~------------~~~~~~v~vI~i~~~~~~~~~l~~ 191 (394)
T PRK00411 133 LDERDRVLIVALDDINYLFEKEG---N------DVLYSLLRAHE------------EYPGARIGVIGISSDLTFLYILDP 191 (394)
T ss_pred HHhcCCEEEEEECCHhHhhccCC---c------hHHHHHHHhhh------------ccCCCeEEEEEEECCcchhhhcCH
Confidence 33 45689999999999872211 1 12233433222 11234788999998764 4667
Q ss_pred ccccCCCce-EEEe--cCCHHHHHHHHHhhcCC----CCCCHHHHHHH
Q 011983 292 PLIRDGRME-KFYW--APTREDRIGVCSGIFRT----DNVPKEDIVKL 332 (473)
Q Consensus 292 aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l 332 (473)
.+.+ ||. ..+. .++.++..+|++..+.. ..++.+.+..+
T Consensus 192 ~~~s--~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i 237 (394)
T PRK00411 192 RVKS--VFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLI 237 (394)
T ss_pred HHHh--cCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHH
Confidence 7766 553 2333 46899999999876642 23555544333
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.25 E-value=5.6e-11 Score=132.95 Aligned_cols=146 Identities=19% Similarity=0.223 Sum_probs=99.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecCCCCcccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiDal~~~ 235 (473)
...++||||||||||++|+++|+..+.+|+.+++... ..+.++..+..+..... .....+|||||+|.+...
T Consensus 52 ~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~-------~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~ 124 (725)
T PRK13341 52 VGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLA-------GVKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKA 124 (725)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhh-------hhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHH
Confidence 3468999999999999999999999999988876521 12345666666543333 345789999999976321
Q ss_pred CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011983 236 MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRI 312 (473)
Q Consensus 236 r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 312 (473)
....|+..++ ...+.+|++| |....++++|++ |...+.. .++.+++.
T Consensus 125 -------------qQdaLL~~lE---------------~g~IiLI~aTTenp~~~l~~aL~S--R~~v~~l~pLs~edi~ 174 (725)
T PRK13341 125 -------------QQDALLPWVE---------------NGTITLIGATTENPYFEVNKALVS--RSRLFRLKSLSDEDLH 174 (725)
T ss_pred -------------HHHHHHHHhc---------------CceEEEEEecCCChHhhhhhHhhc--cccceecCCCCHHHHH
Confidence 1234555443 2456666644 444578999998 6543333 47889999
Q ss_pred HHHHhhcC-------C--CCCCHHHHHHHHhcCCCC
Q 011983 313 GVCSGIFR-------T--DNVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 313 ~Il~~~l~-------~--~~v~~~~l~~l~~~~sga 339 (473)
.|++.++. . -.++.+.+..++...+|.
T Consensus 175 ~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD 210 (725)
T PRK13341 175 QLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGD 210 (725)
T ss_pred HHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCC
Confidence 99998775 2 346677777777765443
No 111
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.25 E-value=7.7e-11 Score=127.97 Aligned_cols=147 Identities=13% Similarity=0.188 Sum_probs=96.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+++|+.++.. ++.++++. ......+|++..
T Consensus 36 ~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~~i~~~~~~d~~ei~~~~------~~~vd~ir~l~~ 109 (527)
T PRK14969 36 RLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACLEIDSGRFVDLIEVDAAS------NTQVDAMRELLD 109 (527)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCceeEeeccc------cCCHHHHHHHHH
Confidence 678889999999999999999999997542 11121110 112345677766
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......|+||||+|.+... ..+.|+..++ +....+.+|++|++++.+.
T Consensus 110 ~~~~~p~~~~~kVvIIDEad~ls~~-------------a~naLLK~LE-------------epp~~~~fIL~t~d~~kil 163 (527)
T PRK14969 110 NAQYAPTRGRFKVYIIDEVHMLSKS-------------AFNAMLKTLE-------------EPPEHVKFILATTDPQKIP 163 (527)
T ss_pred HHhhCcccCCceEEEEcCcccCCHH-------------HHHHHHHHHh-------------CCCCCEEEEEEeCChhhCc
Confidence 5531111345679999999976321 2245666555 4557788888888888898
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
+.+++ |+-.+-+ .|+.++-...++.++...++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~ 209 (527)
T PRK14969 164 VTVLS--RCLQFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARA 209 (527)
T ss_pred hhHHH--HHHHHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 88888 7644444 57888888888887766544 44444444433
No 112
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=2.2e-11 Score=121.67 Aligned_cols=143 Identities=18% Similarity=0.265 Sum_probs=101.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCCCCChHHH-HHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEPAKL-IRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~~Ge~~~~-ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
..|||.||.|+|||+||+.+|+.+++||..-++..|. .+|+|+.-.+ +.++.+.|-.-..+....||+|||||+++.+
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVGEDVENillkLlqaadydV~rAerGIIyIDEIDKIark 177 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVGEDVENILLKLLQAADYDVERAERGIIYIDEIDKIARK 177 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccchhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhcc
Confidence 4689999999999999999999999999999998875 5899996554 4455555543344667789999999999876
Q ss_pred CCCC-CccchhhHHHHHHHHHhhcCCCcccCCCC---------cccCCCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011983 236 MGGT-TQYTVNNQMVNATLMNIADNPTNVQLPGM---------YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304 (473)
Q Consensus 236 r~~~-~~~~~~~~~v~~~Ll~lld~~~~v~l~g~---------~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~ 304 (473)
..+. -..++...-|+++|+.+++ .|.++++.. +.+.+..++++|+.. .+.-|+.-+.+ |......
T Consensus 178 SeN~SITRDVSGEGVQQALLKiiE-GTvasVPPqGGRKHP~Qe~iqvDT~NILFIcgG-AF~GlekiI~~--R~~~~~i 252 (408)
T COG1219 178 SENPSITRDVSGEGVQQALLKIIE-GTVASVPPQGGRKHPQQEFIQVDTSNILFICGG-AFAGLEKIIKK--RLGKKGI 252 (408)
T ss_pred CCCCCcccccCchHHHHHHHHHHc-CceeccCCCCCCCCCccceEEEcccceeEEecc-ccccHHHHHHH--hccCCcc
Confidence 4321 2246677889999999987 566665522 112334555555533 34556666666 6555433
No 113
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.24 E-value=4.7e-11 Score=127.05 Aligned_cols=174 Identities=17% Similarity=0.251 Sum_probs=105.1
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCCh-HHHHHHHHHHHHHHH
Q 011983 143 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEP-AKLIRQRYREAADII 216 (473)
Q Consensus 143 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~-~~~ir~~f~~A~~~~ 216 (473)
..++.+...++. +..++||||||+|||+|++++++++ +..++++++.++...+...- ...+ .-|.+..
T Consensus 118 ~~~~~~~~~~~~--~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~~~~~~~~~~~~-~~f~~~~--- 191 (440)
T PRK14088 118 HAALEVAKNPGR--YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKL-NEFREKY--- 191 (440)
T ss_pred HHHHHHHhCcCC--CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHhcccH-HHHHHHH---
Confidence 334444433432 4459999999999999999999985 45677888776543221100 0001 1122211
Q ss_pred HcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec-CCCCC---Cccc
Q 011983 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-NDFST---LYAP 292 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT-N~~~~---Ld~a 292 (473)
+..+.+|+|||++.+.+... ....+..++..+.+ .+..+|+|+ +.|.. +.+.
T Consensus 192 -~~~~dvLlIDDi~~l~~~~~-------~q~elf~~~n~l~~----------------~~k~iIitsd~~p~~l~~l~~r 247 (440)
T PRK14088 192 -RKKVDVLLIDDVQFLIGKTG-------VQTELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDR 247 (440)
T ss_pred -HhcCCEEEEechhhhcCcHH-------HHHHHHHHHHHHHH----------------cCCeEEEECCCCHHHHHHHHHH
Confidence 34688999999998865421 01223333333222 122455555 45554 5567
Q ss_pred cccCCCceE--EEe--cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchhhHHHHH
Q 011983 293 LIRDGRMEK--FYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSIDFFGALR 348 (473)
Q Consensus 293 LlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~f~gal~ 348 (473)
|.+ ||.. .+. .|+.+.|..|++..+.. ..++.+.+..+++.+++.--...|++.
T Consensus 248 L~S--R~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~~~R~L~g~l~ 307 (440)
T PRK14088 248 LVS--RFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDDNLRRLRGAII 307 (440)
T ss_pred Hhh--HHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccccCHHHHHHHHH
Confidence 787 7753 323 59999999999988764 456777788888887766545444443
No 114
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1e-10 Score=129.80 Aligned_cols=162 Identities=15% Similarity=0.153 Sum_probs=111.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCCC-cEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEeccccccc------------CCCC
Q 011983 136 FMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES------------GNAG 199 (473)
Q Consensus 136 ~~d~~~~~i~k~~l~~~~~~~p-~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s------------~~~G 199 (473)
-++.+...+.+....+...+.| -.+||.||.|+|||.||+++|..+. ..++.+++|+... +|+|
T Consensus 499 AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVSrLIGaPPGYVG 578 (786)
T COG0542 499 AVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVSRLIGAPPGYVG 578 (786)
T ss_pred HHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHHHHhCCCCCCce
Confidence 3334444444444444444555 4677899999999999999999987 8999999988753 2444
Q ss_pred ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceE
Q 011983 200 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279 (473)
Q Consensus 200 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~V 279 (473)
-.+. ..+-+|. ++...|||+||||++..+ .|.+.|++++|+.....-.|. .....+.+|
T Consensus 579 yeeG---G~LTEaV---Rr~PySViLlDEIEKAHp-------------dV~nilLQVlDdGrLTD~~Gr--~VdFrNtiI 637 (786)
T COG0542 579 YEEG---GQLTEAV---RRKPYSVILLDEIEKAHP-------------DVFNLLLQVLDDGRLTDGQGR--TVDFRNTII 637 (786)
T ss_pred eccc---cchhHhh---hcCCCeEEEechhhhcCH-------------HHHHHHHHHhcCCeeecCCCC--EEecceeEE
Confidence 3221 1222232 266689999999997654 477899999997655544433 456789999
Q ss_pred EEecCCCC----------------------------CCccccccCCCceEEEec--CCHHHHHHHHHhhcC
Q 011983 280 IVTGNDFS----------------------------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFR 320 (473)
Q Consensus 280 IaTTN~~~----------------------------~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~ 320 (473)
|+|||--. ...|+++. |+|.+|.+ .+.+...+|+..++.
T Consensus 638 ImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLN--Rid~II~F~~L~~~~l~~Iv~~~L~ 706 (786)
T COG0542 638 IMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLN--RIDEIIPFNPLSKEVLERIVDLQLN 706 (786)
T ss_pred EEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHh--hcccEEeccCCCHHHHHHHHHHHHH
Confidence 99998321 23677788 99977763 578888888876554
No 115
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.24 E-value=6.7e-11 Score=111.23 Aligned_cols=145 Identities=11% Similarity=0.085 Sum_probs=95.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+.+++.+-.. +..+... ... -....++++.+
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~---~~~--~~~~~i~~i~~ 86 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPE---GQS--IKVDQVRELVE 86 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccc---cCc--CCHHHHHHHHH
Confidence 678899999999999999999999996321 1111111 000 12345666666
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......||+|||+|.+... ....|+..++ +..+...+|++||.+..|.
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~ 140 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMNEA-------------AANALLKTLE-------------EPPPNTLFILITPSPEKLL 140 (188)
T ss_pred HHccCcccCCeEEEEEechhhhCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChHhCh
Confidence 5542111355679999999877432 1234556555 4456677888888889999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHhcC
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVDTF 336 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~ 336 (473)
+++++ |+..+-. .|+.++..+++... +++.+.+..++...
T Consensus 141 ~~i~s--r~~~~~~~~~~~~~~~~~l~~~----gi~~~~~~~i~~~~ 181 (188)
T TIGR00678 141 PTIRS--RCQVLPFPPLSEEALLQWLIRQ----GISEEAAELLLALA 181 (188)
T ss_pred HHHHh--hcEEeeCCCCCHHHHHHHHHHc----CCCHHHHHHHHHHc
Confidence 99998 7643333 47899988888776 46666665555543
No 116
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.23 E-value=2e-11 Score=108.86 Aligned_cols=120 Identities=18% Similarity=0.173 Sum_probs=74.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc------CCC---CChHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES------GNA---GEPAKLIRQRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s------~~~---Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
.|||+||||||||++|+.+|+.++.+++.+.++.... .|. +.. ......+-+| ...+++++|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~-~~~~~~l~~a-----~~~~~il~lDEi 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQF-EFKDGPLVRA-----MRKGGILVLDEI 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTT-CEEE-CCCTT-----HHEEEEEEESSC
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeeccccc-cccccccccc-----ccceeEEEECCc
Confidence 4899999999999999999999999998888764321 111 000 0000001111 126899999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCC------CceEEEecCCCC----CCccccccCCCc
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENP------RVPIIVTGNDFS----TLYAPLIRDGRM 299 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~------~V~VIaTTN~~~----~Ld~aLlR~GRf 299 (473)
+..- ..+...|+.++++-+.....+........ +..||+|+|..+ .|+++|+| ||
T Consensus 75 n~a~-------------~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~--Rf 139 (139)
T PF07728_consen 75 NRAP-------------PEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLD--RF 139 (139)
T ss_dssp GG---------------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHT--T-
T ss_pred ccCC-------------HHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHh--hC
Confidence 9653 24566777777754444222221111112 489999999998 99999999 87
No 117
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=1.2e-10 Score=127.53 Aligned_cols=167 Identities=9% Similarity=0.118 Sum_probs=105.2
Q ss_pred hhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------ 184 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------ 184 (473)
|+++++. ..+...+++++.. .+.+..+||+||||||||++|+++|+.+...
T Consensus 15 f~dIiGQ---------e~v~~~L~~ai~~--~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~~i~ 83 (624)
T PRK14959 15 FAEVAGQ---------ETVKAILSRAAQE--NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCRKVT 83 (624)
T ss_pred HHHhcCC---------HHHHHHHHHHHHc--CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHHHHh
Confidence 7777654 2223334444432 2567899999999999999999999997642
Q ss_pred ------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhc
Q 011983 185 ------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258 (473)
Q Consensus 185 ------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld 258 (473)
++.+++.. ......+|.+.+.+...-......||||||+|.+-. .....|+..++
T Consensus 84 ~g~hpDv~eId~a~------~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~-------------~a~naLLk~LE 144 (624)
T PRK14959 84 QGMHVDVVEIDGAS------NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTR-------------EAFNALLKTLE 144 (624)
T ss_pred cCCCCceEEEeccc------ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCH-------------HHHHHHHHHhh
Confidence 22232210 011233444333332111245668999999997732 12345666555
Q ss_pred CCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 259 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 259 ~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
+...++.+|++||.+..+.+.|++ |+..+-+ -++.++...+|+.++...+ ++.+.+..++.
T Consensus 145 -------------EP~~~~ifILaTt~~~kll~TI~S--Rcq~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~ 208 (624)
T PRK14959 145 -------------EPPARVTFVLATTEPHKFPVTIVS--RCQHFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIAR 208 (624)
T ss_pred -------------ccCCCEEEEEecCChhhhhHHHHh--hhhccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 445678888899999999988888 7754433 4778888888888776654 55555555444
No 118
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.23 E-value=8.2e-11 Score=129.08 Aligned_cols=169 Identities=11% Similarity=0.175 Sum_probs=109.0
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----------------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN----------------- 184 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~----------------- 184 (473)
+|+++++- ..+...+++.+.. .+.|..+|||||||+|||++|+++|+.+...
T Consensus 14 ~f~~iiGq---------~~v~~~L~~~i~~--~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~~i 82 (576)
T PRK14965 14 TFSDLTGQ---------EHVSRTLQNAIDT--GRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCVEI 82 (576)
T ss_pred CHHHccCc---------HHHHHHHHHHHHc--CCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHHHH
Confidence 37777764 2223333444433 3678899999999999999999999997531
Q ss_pred -------cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhh
Q 011983 185 -------PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIA 257 (473)
Q Consensus 185 -------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~ll 257 (473)
++.+++.+ ......+|++.+.+...-......|+||||+|.+... ..+.|+..+
T Consensus 83 ~~g~~~d~~eid~~s------~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~-------------a~naLLk~L 143 (576)
T PRK14965 83 TEGRSVDVFEIDGAS------NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTN-------------AFNALLKTL 143 (576)
T ss_pred hcCCCCCeeeeeccC------ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHH-------------HHHHHHHHH
Confidence 22222211 1123456676665531111344579999999876421 235666666
Q ss_pred cCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 258 DNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 258 d~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
+ +..+++.+|++||.++.|.+.|++ |+..+-+ .++.++-...+..++...+ ++.+.+..++.
T Consensus 144 E-------------epp~~~~fIl~t~~~~kl~~tI~S--Rc~~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~ 208 (576)
T PRK14965 144 E-------------EPPPHVKFIFATTEPHKVPITILS--RCQRFDFRRIPLQKIVDRLRYIADQEGISISDAALALVAR 208 (576)
T ss_pred H-------------cCCCCeEEEEEeCChhhhhHHHHH--hhhhhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence 5 556788899999999999999998 7655444 4677887777877776654 44555555444
Q ss_pred c
Q 011983 335 T 335 (473)
Q Consensus 335 ~ 335 (473)
.
T Consensus 209 ~ 209 (576)
T PRK14965 209 K 209 (576)
T ss_pred H
Confidence 4
No 119
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.23 E-value=5.2e-10 Score=119.43 Aligned_cols=147 Identities=12% Similarity=0.167 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-------------------------cEEecccccccCCCCChHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-------------------------PIMMSAGELESGNAGEPAKLIRQRY 209 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~-------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 209 (473)
+.|..+|||||||+|||++|+++|+.+... ++.+++.. .. .-..++++-
T Consensus 37 ~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d~~~i~g~~----~~--gid~ir~i~ 110 (451)
T PRK06305 37 RAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLDVLEIDGAS----HR--GIEDIRQIN 110 (451)
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCceEEeeccc----cC--CHHHHHHHH
Confidence 578899999999999999999999986431 22222110 01 123444443
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.....-......|+||||+|.+... ..+.|+..++ +..+.+.+|++||.+..|
T Consensus 111 ~~l~~~~~~~~~kvvIIdead~lt~~-------------~~n~LLk~lE-------------ep~~~~~~Il~t~~~~kl 164 (451)
T PRK06305 111 ETVLFTPSKSRYKIYIIDEVHMLTKE-------------AFNSLLKTLE-------------EPPQHVKFFLATTEIHKI 164 (451)
T ss_pred HHHHhhhhcCCCEEEEEecHHhhCHH-------------HHHHHHHHhh-------------cCCCCceEEEEeCChHhc
Confidence 33221111456789999999877421 2345666555 445677888888988999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
.++|++ |+..+.+ .++.++....+..++...+ ++.+.+..++..
T Consensus 165 ~~tI~s--Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~ 211 (451)
T PRK06305 165 PGTILS--RCQKMHLKRIPEETIIDKLALIAKQEGIETSREALLPIARA 211 (451)
T ss_pred chHHHH--hceEEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999999 8765544 4788888888887776554 555555555544
No 120
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.21 E-value=1.9e-10 Score=119.25 Aligned_cols=158 Identities=13% Similarity=0.160 Sum_probs=98.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc-------cccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA-------GELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~-------s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
+.|..+|||||||+|||++|+++++.+......... -++. .........++.+++++...--...+.||+||
T Consensus 37 ~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~i~~l~~~~~~~p~~~~~kiviID 115 (367)
T PRK14970 37 HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFELD-AASNNSVDDIRNLIDQVRIPPQTGKYKIYIID 115 (367)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEEec-cccCCCHHHHHHHHHHHhhccccCCcEEEEEe
Confidence 568899999999999999999999997542111000 0010 11112235677777765311113456799999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cC
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 306 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P 306 (473)
|+|.+... ....|+..++ +......+|++|+.+..+.+++.+ |+..+-+ .|
T Consensus 116 E~~~l~~~-------------~~~~ll~~le-------------~~~~~~~~Il~~~~~~kl~~~l~s--r~~~v~~~~~ 167 (367)
T PRK14970 116 EVHMLSSA-------------AFNAFLKTLE-------------EPPAHAIFILATTEKHKIIPTILS--RCQIFDFKRI 167 (367)
T ss_pred ChhhcCHH-------------HHHHHHHHHh-------------CCCCceEEEEEeCCcccCCHHHHh--cceeEecCCc
Confidence 99966321 1234545444 334456677778888899999988 6543322 47
Q ss_pred CHHHHHHHHHhhcCCCC--CCHHHHHHHHhcCCCCchh
Q 011983 307 TREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~sga~l~ 342 (473)
+.++...++...+...+ ++.+.+..++... +.++.
T Consensus 168 ~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~-~gdlr 204 (367)
T PRK14970 168 TIKDIKEHLAGIAVKEGIKFEDDALHIIAQKA-DGALR 204 (367)
T ss_pred cHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhC-CCCHH
Confidence 88888888888776655 5666666666653 33443
No 121
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.20 E-value=6.7e-11 Score=119.97 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=88.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCC---cEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecCCCCcc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 233 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~---~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 233 (473)
..++||||||||||+||+.|++....+ |+.+++..- .-+-+|.+|+.+..... ..+..|||||||+.+-
T Consensus 163 pSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a-------~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN 235 (554)
T KOG2028|consen 163 PSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNA-------KTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN 235 (554)
T ss_pred CceEEecCCCCchHHHHHHHHhhcCCCceEEEEEecccc-------chHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh
Confidence 358899999999999999999997665 777776532 24678999999875544 5667899999998653
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTRED 310 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT--N~~~~Ld~aLlR~GRfd~~i~-~P~~ee 310 (473)
.. | +.+|+-. .+.+.|.+|++| |..-.|..+|++ |+-.++. -.+.+.
T Consensus 236 ks-----Q--------QD~fLP~---------------VE~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~~n~ 285 (554)
T KOG2028|consen 236 KS-----Q--------QDTFLPH---------------VENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLPVNA 285 (554)
T ss_pred hh-----h--------hhcccce---------------eccCceEEEecccCCCccchhHHHHh--ccceeEeccCCHHH
Confidence 21 1 1334332 235778888744 666689999999 8766666 345666
Q ss_pred HHHHHHh
Q 011983 311 RIGVCSG 317 (473)
Q Consensus 311 R~~Il~~ 317 (473)
-..||.+
T Consensus 286 v~~iL~r 292 (554)
T KOG2028|consen 286 VVTILMR 292 (554)
T ss_pred HHHHHHH
Confidence 6677764
No 122
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.19 E-value=2.3e-10 Score=124.77 Aligned_cols=147 Identities=14% Similarity=0.203 Sum_probs=98.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+||+||||+|||++|+++|+.+.. .++.++++. ...-..+|.+.+
T Consensus 36 rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr~i~~~~h~DiieIdaas------~igVd~IReIi~ 109 (605)
T PRK05896 36 KLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCESINTNQSVDIVELDAAS------NNGVDEIRNIID 109 (605)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHHcCCCCceEEecccc------ccCHHHHHHHHH
Confidence 67889999999999999999999999642 122222211 012345666666
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...--.....|++|||+|.+-.. ..+.|+..++ ++...+.+|++|+.+..|.
T Consensus 110 ~~~~~P~~~~~KVIIIDEad~Lt~~-------------A~NaLLKtLE-------------EPp~~tvfIL~Tt~~~KLl 163 (605)
T PRK05896 110 NINYLPTTFKYKVYIIDEAHMLSTS-------------AWNALLKTLE-------------EPPKHVVFIFATTEFQKIP 163 (605)
T ss_pred HHHhchhhCCcEEEEEechHhCCHH-------------HHHHHHHHHH-------------hCCCcEEEEEECCChHhhh
Confidence 5531111334569999999976321 2356666565 4556788888888899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
+++++ |+..+-+ .|+.++....++..+...+ ++.+.+..++..
T Consensus 164 ~TI~S--Rcq~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~l 209 (605)
T PRK05896 164 LTIIS--RCQRYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADL 209 (605)
T ss_pred HHHHh--hhhhcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99998 7765444 4788888888888776544 566655555444
No 123
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.17 E-value=5.5e-10 Score=124.01 Aligned_cols=153 Identities=12% Similarity=0.209 Sum_probs=99.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE---eccccc----------c--cCCCCChHHHHHHHHHHHHHHHHcC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM---MSAGEL----------E--SGNAGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~---vs~s~l----------~--s~~~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
+.+..+|||||||+|||++|+++|+.+...--. -.|+.+ . ..........+|++.+.+...--..
T Consensus 38 rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g 117 (725)
T PRK07133 38 KISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQS 117 (725)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcC
Confidence 678899999999999999999999996542100 001000 0 0000012455777776664222245
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf 299 (473)
...|++|||+|.+... ....|+..++ ++...+.+|++|+.++.|++.|++ |+
T Consensus 118 ~~KV~IIDEa~~LT~~-------------A~NALLKtLE-------------EPP~~tifILaTte~~KLl~TI~S--Rc 169 (725)
T PRK07133 118 KYKIYIIDEVHMLSKS-------------AFNALLKTLE-------------EPPKHVIFILATTEVHKIPLTILS--RV 169 (725)
T ss_pred CCEEEEEEChhhCCHH-------------HHHHHHHHhh-------------cCCCceEEEEEcCChhhhhHHHHh--hc
Confidence 6789999999976421 2345666555 456677888888899999999998 87
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCCCCCC--HHHHHHHHhc
Q 011983 300 EKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 335 (473)
Q Consensus 300 d~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 335 (473)
..+-+ .|+.++....++.++...++. .+.+..++..
T Consensus 170 q~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~l 208 (725)
T PRK07133 170 QRFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKL 208 (725)
T ss_pred eeEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 65444 478888888888877665544 3334444433
No 124
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.17 E-value=9.6e-10 Score=125.83 Aligned_cols=183 Identities=14% Similarity=0.144 Sum_probs=111.6
Q ss_pred ChhhHHHHHHHHHHhhhcCCCC-CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC-----CCCChHH
Q 011983 133 APAFMDKVVVHITKNFLNLPNV-KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAK 203 (473)
Q Consensus 133 ~~~~~d~~~~~i~k~~l~~~~~-~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~~ 203 (473)
-+..++.+...+.+....+... +|...+||+||||||||++|+++|+.+ +.+++.++++++... ..|.+..
T Consensus 570 Q~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g 649 (852)
T TIGR03346 570 QDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPG 649 (852)
T ss_pred ChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCC
Confidence 3455555555555443322222 344578999999999999999999986 467888887765321 1221111
Q ss_pred HH----HHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceE
Q 011983 204 LI----RQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279 (473)
Q Consensus 204 ~i----r~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~V 279 (473)
++ ...+..+ ++....+||||||||++.+ .+...|++++++.... ++.-......+.+|
T Consensus 650 ~~g~~~~g~l~~~---v~~~p~~vlllDeieka~~-------------~v~~~Ll~~l~~g~l~--d~~g~~vd~rn~ii 711 (852)
T TIGR03346 650 YVGYEEGGQLTEA---VRRKPYSVVLFDEVEKAHP-------------DVFNVLLQVLDDGRLT--DGQGRTVDFRNTVI 711 (852)
T ss_pred ccCcccccHHHHH---HHcCCCcEEEEeccccCCH-------------HHHHHHHHHHhcCcee--cCCCeEEecCCcEE
Confidence 00 0112222 1255668999999997632 3557788888754433 22111233578899
Q ss_pred EEecCCCCC-------------------------CccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-----------
Q 011983 280 IVTGNDFST-------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT----------- 321 (473)
Q Consensus 280 IaTTN~~~~-------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~----------- 321 (473)
|+|||.... +.|+|+. |+|.++. .++.++...|+...+..
T Consensus 712 I~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~--Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~ 789 (852)
T TIGR03346 712 IMTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLN--RIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKIT 789 (852)
T ss_pred EEeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhc--CcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCe
Confidence 999997321 3466776 9988777 37888888887755431
Q ss_pred CCCCHHHHHHHHhc
Q 011983 322 DNVPKEDIVKLVDT 335 (473)
Q Consensus 322 ~~v~~~~l~~l~~~ 335 (473)
-.++.+.+..+++.
T Consensus 790 l~i~~~a~~~L~~~ 803 (852)
T TIGR03346 790 LELSDAALDFLAEA 803 (852)
T ss_pred ecCCHHHHHHHHHh
Confidence 23455556666553
No 125
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.17 E-value=4.1e-10 Score=121.14 Aligned_cols=147 Identities=17% Similarity=0.250 Sum_probs=94.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.+..+|||||||+|||++|+.+|+.++.. ++.++++ .......+|.+.+
T Consensus 36 ~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~~i~~g~~~d~~eidaa------s~~gvd~ir~I~~ 109 (486)
T PRK14953 36 RVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCVEIDKGSFPDLIEIDAA------SNRGIDDIRALRD 109 (486)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHHHHhcCCCCcEEEEeCc------cCCCHHHHHHHHH
Confidence 567889999999999999999999997521 1111111 0112334555554
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...--.....|++|||+|.+... ....|+..++ +..+.+.+|++|+.++.|+
T Consensus 110 ~~~~~P~~~~~KVvIIDEad~Lt~~-------------a~naLLk~LE-------------epp~~~v~Il~tt~~~kl~ 163 (486)
T PRK14953 110 AVSYTPIKGKYKVYIIDEAHMLTKE-------------AFNALLKTLE-------------EPPPRTIFILCTTEYDKIP 163 (486)
T ss_pred HHHhCcccCCeeEEEEEChhhcCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEECCHHHHH
Confidence 4431111455689999999976321 1244555454 4455667777778888899
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
+++++ |+..+.+ .|+.++....++.++...++ +.+.+..++..
T Consensus 164 ~tI~S--Rc~~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~ 209 (486)
T PRK14953 164 PTILS--RCQRFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQA 209 (486)
T ss_pred HHHHH--hceEEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99988 7655444 47899999999888776554 44555555544
No 126
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.17 E-value=2.5e-10 Score=124.24 Aligned_cols=163 Identities=17% Similarity=0.195 Sum_probs=94.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEeccccc-------ccCCCCChHHHH---HHHHHHH--
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGEL-------ESGNAGEPAKLI---RQRYREA-- 212 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l-------~s~~~Ge~~~~i---r~~f~~A-- 212 (473)
..|..+|||||||||||++|+++.+.+ +.+|+.+++... .....|....-+ ...|..+
T Consensus 84 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~ 163 (531)
T TIGR02902 84 PNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGI 163 (531)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCc
Confidence 346789999999999999999998752 357888887632 111111100000 0000000
Q ss_pred ----HHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCC-Ccc---------------cC
Q 011983 213 ----ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPG-MYN---------------QE 272 (473)
Q Consensus 213 ----~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g-~~~---------------~~ 272 (473)
...+......+|||||+|.+... ..+.|+.++++.. +.+.+ .|. ..
T Consensus 164 ~~~~~G~l~~a~gG~L~IdEI~~L~~~-------------~q~~LL~~Le~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (531)
T TIGR02902 164 PQPKPGAVTRAHGGVLFIDEIGELHPV-------------QMNKLLKVLEDRK-VFLDSAYYNSENPNIPSHIHDIFQNG 229 (531)
T ss_pred ccccCchhhccCCcEEEEechhhCCHH-------------HHHHHHHHHHhCe-eeeccccccccCcccccchhhhcccC
Confidence 00112344689999999987432 2344555554221 11111 000 01
Q ss_pred CCCCce-EEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHH
Q 011983 273 ENPRVP-IIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLV 333 (473)
Q Consensus 273 ~~~~V~-VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~ 333 (473)
...++. |++|||.++.|+|+|++ |+..+.+ .++.+++.+|++.++.+.+ ++.+.+..+.
T Consensus 230 ~~~d~rlI~ATt~~p~~L~paLrs--R~~~I~f~pL~~eei~~Il~~~a~k~~i~is~~al~~I~ 292 (531)
T TIGR02902 230 LPADFRLIGATTRNPEEIPPALRS--RCVEIFFRPLLDEEIKEIAKNAAEKIGINLEKHALELIV 292 (531)
T ss_pred cccceEEEEEecCCcccCChHHhh--hhheeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHH
Confidence 122334 44577899999999999 8876665 4678999999998887644 4455555443
No 127
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.16 E-value=4.2e-10 Score=96.83 Aligned_cols=125 Identities=18% Similarity=0.117 Sum_probs=78.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCC---cEEecccccccC--------------CCCChHHHHHHHHHHHHHHHHcC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSAGELESG--------------NAGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~---~i~vs~s~l~s~--------------~~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
+..++|+||||||||++++.+|+.+... ++.++++..... ........++..+..|. ..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ 77 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALAR----KL 77 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHH----hc
Confidence 4679999999999999999999998875 777777654322 12334455556666554 66
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CCCCccccccCCC
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYAPLIRDGR 298 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~~Ld~aLlR~GR 298 (473)
.+.+|||||++.+......... ........+.. .....+..+|+++|. ....+..+.+ |
T Consensus 78 ~~~viiiDei~~~~~~~~~~~~---~~~~~~~~~~~---------------~~~~~~~~~i~~~~~~~~~~~~~~~~--~ 137 (148)
T smart00382 78 KPDVLILDEITSLLDAEQEALL---LLLEELRLLLL---------------LKSEKNLTVILTTNDEKDLGPALLRR--R 137 (148)
T ss_pred CCCEEEEECCcccCCHHHHHHH---HhhhhhHHHHH---------------HHhcCCCEEEEEeCCCccCchhhhhh--c
Confidence 6899999999988654210000 00000000011 133567789999996 3344444555 7
Q ss_pred ceEEEec
Q 011983 299 MEKFYWA 305 (473)
Q Consensus 299 fd~~i~~ 305 (473)
++..+.+
T Consensus 138 ~~~~~~~ 144 (148)
T smart00382 138 FDRRIVL 144 (148)
T ss_pred cceEEEe
Confidence 8777763
No 128
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.16 E-value=1.1e-09 Score=120.89 Aligned_cols=154 Identities=14% Similarity=0.188 Sum_probs=98.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE----eccc--------------cc--ccCCCCChHHHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----MSAG--------------EL--ESGNAGEPAKLIRQRYREAAD 214 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~----vs~s--------------~l--~s~~~Ge~~~~ir~~f~~A~~ 214 (473)
+.+..+|||||||+|||++|+++|+.+...... -.|+ ++ .....+.....+|++.+.+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~ 115 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQF 115 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhh
Confidence 456789999999999999999999997642100 0011 00 011112334677777776641
Q ss_pred HHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccc
Q 011983 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLl 294 (473)
.--.....|+||||+|.+-. ...+.|+..++ +....+.+|++|++++.|.+.|+
T Consensus 116 ~p~~~~~KViIIDEad~Lt~-------------~a~naLLK~LE-------------ePp~~tvfIL~t~~~~~llpTIr 169 (620)
T PRK14948 116 APVQARWKVYVIDECHMLST-------------AAFNALLKTLE-------------EPPPRVVFVLATTDPQRVLPTII 169 (620)
T ss_pred ChhcCCceEEEEECccccCH-------------HHHHHHHHHHh-------------cCCcCeEEEEEeCChhhhhHHHH
Confidence 11134567999999997732 12345666555 45567788888888999999998
Q ss_pred cCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcC
Q 011983 295 RDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 336 (473)
Q Consensus 295 R~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 336 (473)
+ |+..+-+ .++.++-...+..++... .++.+.+..++...
T Consensus 170 S--Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s 212 (620)
T PRK14948 170 S--RCQRFDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRS 212 (620)
T ss_pred h--heeEEEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHc
Confidence 8 8766555 467777777777666554 34555555544443
No 129
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.15 E-value=2.2e-10 Score=120.94 Aligned_cols=135 Identities=16% Similarity=0.112 Sum_probs=77.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCC-------cEEecc----cccccCCC-C-ChHHHHHHHHHHHHHHHHc--CCc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGIN-------PIMMSA----GELESGNA-G-EPAKLIRQRYREAADIIKK--GKM 221 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~-------~i~vs~----s~l~s~~~-G-e~~~~ir~~f~~A~~~~~~--~~p 221 (473)
.+.++|+||||||||++|+.+|+.+... .+.++. .++..++. + ..-......|.++...++. ..|
T Consensus 194 ~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~ 273 (459)
T PRK11331 194 KKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKK 273 (459)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccCCCCCCeEecCchHHHHHHHHHhcccCC
Confidence 4579999999999999999999987531 122221 12222221 1 0001111233322222222 468
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-----cccC-------CCCcccCCCCCceEEEecCCCC--
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-----NVQL-------PGMYNQEENPRVPIIVTGNDFS-- 287 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-----~v~l-------~g~~~~~~~~~V~VIaTTN~~~-- 287 (473)
++||||||+..-.. .+...++.+++... .+.+ ..+ ....++.||+|.|..+
T Consensus 274 ~vliIDEINRani~------------kiFGel~~lLE~~~rg~~~~v~l~y~e~d~e~f---~iP~Nl~IIgTMNt~Drs 338 (459)
T PRK11331 274 YVFIIDEINRANLS------------KVFGEVMMLMEHDKRGENWSVPLTYSENDEERF---YVPENVYIIGLMNTADRS 338 (459)
T ss_pred cEEEEehhhccCHH------------Hhhhhhhhhccccccccccceeeeccccccccc---cCCCCeEEEEecCccccc
Confidence 99999999965321 23334444444211 0111 112 3358899999999988
Q ss_pred --CCccccccCCCceEEEecCCH
Q 011983 288 --TLYAPLIRDGRMEKFYWAPTR 308 (473)
Q Consensus 288 --~Ld~aLlR~GRfd~~i~~P~~ 308 (473)
.||.||+| ||..+-..|+.
T Consensus 339 ~~~lD~AlrR--RF~fi~i~p~~ 359 (459)
T PRK11331 339 LAVVDYALRR--RFSFIDIEPGF 359 (459)
T ss_pred hhhccHHHHh--hhheEEecCCC
Confidence 89999999 88554334643
No 130
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.6e-10 Score=119.07 Aligned_cols=137 Identities=12% Similarity=0.115 Sum_probs=98.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChH----HHHHHHHHHHHHHHHcCCceEEEec
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~----~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
+...+-..+||+||||+|||.||-.+|...+.||+.+-.++-. +|-+| ..|+.+|+.|. +..-+||++|
T Consensus 533 s~~s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~m---iG~sEsaKc~~i~k~F~DAY----kS~lsiivvD 605 (744)
T KOG0741|consen 533 SERSPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDM---IGLSESAKCAHIKKIFEDAY----KSPLSIIVVD 605 (744)
T ss_pred cccCcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHc---cCccHHHHHHHHHHHHHHhh----cCcceEEEEc
Confidence 4556678999999999999999999999999999986554322 24333 47889999998 8889999999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccc-cccCCCceEEEecC
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAP 306 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~a-LlR~GRfd~~i~~P 306 (473)
+|+.+..--. -...-...+.++|+-++. . ......+.+|++||.+.+.|..- ++. .|+..|.+|
T Consensus 606 diErLiD~vp---IGPRfSN~vlQaL~VllK-----~-----~ppkg~kLli~~TTS~~~vL~~m~i~~--~F~~~i~Vp 670 (744)
T KOG0741|consen 606 DIERLLDYVP---IGPRFSNLVLQALLVLLK-----K-----QPPKGRKLLIFGTTSRREVLQEMGILD--CFSSTIHVP 670 (744)
T ss_pred chhhhhcccc---cCchhhHHHHHHHHHHhc-----c-----CCCCCceEEEEecccHHHHHHHcCHHH--hhhheeecC
Confidence 9998864200 001112367778887776 1 11335678888999887765443 556 788888887
Q ss_pred CHHH
Q 011983 307 TRED 310 (473)
Q Consensus 307 ~~ee 310 (473)
+...
T Consensus 671 nl~~ 674 (744)
T KOG0741|consen 671 NLTT 674 (744)
T ss_pred ccCc
Confidence 6443
No 131
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.14 E-value=1.2e-09 Score=119.40 Aligned_cols=147 Identities=14% Similarity=0.149 Sum_probs=97.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+++|+.+... ++.+++.. ...-..++++.+
T Consensus 36 ~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~~i~~~~~~dv~~idgas------~~~vddIr~l~e 109 (563)
T PRK06647 36 KIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCKSIDNDNSLDVIEIDGAS------NTSVQDVRQIKE 109 (563)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHHHHHcCCCCCeEEecCcc------cCCHHHHHHHHH
Confidence 578899999999999999999999997532 12221110 012345555554
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...--.....|++|||+|.+.. ...+.|+..++ +....+.+|++|+.+..|.
T Consensus 110 ~~~~~p~~~~~KVvIIDEa~~Ls~-------------~a~naLLK~LE-------------epp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 110 EIMFPPASSRYRVYIIDEVHMLSN-------------SAFNALLKTIE-------------EPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred HHHhchhcCCCEEEEEEChhhcCH-------------HHHHHHHHhhc-------------cCCCCEEEEEecCChHHhH
Confidence 443111145677999999997632 12345556454 4567788888888889999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
++|++ |+..+-+ .|+.++..++++.++...+ ++.+.+..++..
T Consensus 164 ~tI~S--Rc~~~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~ 209 (563)
T PRK06647 164 ATIKS--RCQHFNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYK 209 (563)
T ss_pred HHHHH--hceEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99998 7775544 5788888888887775544 345555545444
No 132
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.13 E-value=3.6e-10 Score=110.59 Aligned_cols=147 Identities=13% Similarity=0.150 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..++||||||||||+|+.++|+++. ....+++...... ....+.+.+. . ..+|+|||++.+.+
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~-----~~~~~~~~~~-------~--~dlliiDdi~~~~~ 111 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAW-----FVPEVLEGME-------Q--LSLVCIDNIECIAG 111 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhh-----hhHHHHHHhh-------h--CCEEEEeChhhhcC
Confidence 4799999999999999999999854 3344555443221 0011111111 1 36899999998754
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-CCCC---CccccccCCCce--EEEe--cC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFST---LYAPLIRDGRME--KFYW--AP 306 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~~~~---Ld~aLlR~GRfd--~~i~--~P 306 (473)
+.. ....+...+..+.+ .++..+|+||+ .|.. +.|.|++ |+. ..+. .|
T Consensus 112 ~~~-------~~~~lf~l~n~~~e---------------~g~~~li~ts~~~p~~l~~~~~~L~S--Rl~~g~~~~l~~~ 167 (235)
T PRK08084 112 DEL-------WEMAIFDLYNRILE---------------SGRTRLLITGDRPPRQLNLGLPDLAS--RLDWGQIYKLQPL 167 (235)
T ss_pred CHH-------HHHHHHHHHHHHHH---------------cCCCeEEEeCCCChHHcCcccHHHHH--HHhCCceeeecCC
Confidence 311 11223333333222 23444566554 4444 5789999 884 3333 58
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchh
Q 011983 307 TREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~ 342 (473)
+.++|.++++..... -.++.+.+..++..+.+.--.
T Consensus 168 ~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~d~r~ 205 (235)
T PRK08084 168 SDEEKLQALQLRARLRGFELPEDVGRFLLKRLDREMRT 205 (235)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcCCHHH
Confidence 999999999875544 356677777777776555333
No 133
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.13 E-value=1.8e-09 Score=123.58 Aligned_cols=164 Identities=14% Similarity=0.163 Sum_probs=100.1
Q ss_pred hhhHHHHHHHHHHhhhcCCCCCCC-cEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC------------C
Q 011983 134 PAFMDKVVVHITKNFLNLPNVKVP-LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------N 197 (473)
Q Consensus 134 ~~~~d~~~~~i~k~~l~~~~~~~p-~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~------------~ 197 (473)
...++.+...+.+....+.....| ..+||+||||||||++|++||+.+ +.+++.++++++... |
T Consensus 574 ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy 653 (857)
T PRK10865 574 NEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGY 653 (857)
T ss_pred HHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcc
Confidence 334444444443333222222344 468999999999999999999986 457888887765321 2
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCc
Q 011983 198 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRV 277 (473)
Q Consensus 198 ~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V 277 (473)
+|.... ..+..+. +....+||||||+|++.+ .+...|++++++.... ++........+.
T Consensus 654 ~g~~~~---g~l~~~v---~~~p~~vLllDEieka~~-------------~v~~~Ll~ile~g~l~--d~~gr~vd~rn~ 712 (857)
T PRK10865 654 VGYEEG---GYLTEAV---RRRPYSVILLDEVEKAHP-------------DVFNILLQVLDDGRLT--DGQGRTVDFRNT 712 (857)
T ss_pred cccchh---HHHHHHH---HhCCCCeEEEeehhhCCH-------------HHHHHHHHHHhhCcee--cCCceEEeeccc
Confidence 221110 1122222 244558999999986632 3557788888743322 221112345677
Q ss_pred eEEEecCCC-------------------------CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC
Q 011983 278 PIIVTGNDF-------------------------STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR 320 (473)
Q Consensus 278 ~VIaTTN~~-------------------------~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~ 320 (473)
+||+|||.. ..+.|+|+. |+|.++. .++.++...|++.++.
T Consensus 713 iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln--Rld~iivF~PL~~edl~~Iv~~~L~ 780 (857)
T PRK10865 713 VVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN--RIDEVVVFHPLGEQHIASIAQIQLQ 780 (857)
T ss_pred EEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH--hCCeeEecCCCCHHHHHHHHHHHHH
Confidence 899999973 124567888 9987776 3688888888775553
No 134
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.12 E-value=1.1e-09 Score=110.51 Aligned_cols=144 Identities=15% Similarity=0.172 Sum_probs=92.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHH--cCCceEEEecCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFINDLDA 231 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~ILfIDEiDa 231 (473)
.++||||||||||++++++++++. .+++.++.++.. ....++..+........ ...+.+|+|||+|.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~------~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~ 113 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDER------GIDVIRNKIKEFARTAPVGGAPFKIIFLDEADN 113 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEecccccc------chHHHHHHHHHHHhcCCCCCCCceEEEEeCccc
Confidence 479999999999999999999963 244545433211 11223333332221110 13467999999997
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 310 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 310 (473)
+... ....|..+++ .......+|+++|.+..+.+++.+ |+..+.+ .|+.++
T Consensus 114 l~~~-------------~~~~L~~~le-------------~~~~~~~lIl~~~~~~~l~~~l~s--r~~~~~~~~l~~~e 165 (319)
T PRK00440 114 LTSD-------------AQQALRRTME-------------MYSQNTRFILSCNYSSKIIDPIQS--RCAVFRFSPLKKEA 165 (319)
T ss_pred CCHH-------------HHHHHHHHHh-------------cCCCCCeEEEEeCCccccchhHHH--HhheeeeCCCCHHH
Confidence 7421 1234555444 223456778888888888888888 7665444 578899
Q ss_pred HHHHHHhhcCCCC--CCHHHHHHHHhcC
Q 011983 311 RIGVCSGIFRTDN--VPKEDIVKLVDTF 336 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~~~~l~~l~~~~ 336 (473)
...+++.++...+ ++.+.+..++...
T Consensus 166 i~~~l~~~~~~~~~~i~~~al~~l~~~~ 193 (319)
T PRK00440 166 VAERLRYIAENEGIEITDDALEAIYYVS 193 (319)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 9999988886654 5666777776653
No 135
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.12 E-value=1.1e-09 Score=120.43 Aligned_cols=152 Identities=13% Similarity=0.163 Sum_probs=98.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec-------cc--------------ccccCCC--CChHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS-------AG--------------ELESGNA--GEPAKLIRQRYRE 211 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs-------~s--------------~l~s~~~--Ge~~~~ir~~f~~ 211 (473)
+.|..+|||||+|+|||++|+++|+.+.......+ ++ ++..... ......||++.+.
T Consensus 44 ri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~ 123 (598)
T PRK09111 44 RIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGVGEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIES 123 (598)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcccHHHHHHhcCCCCceEEecccccCCHHHHHHHHHH
Confidence 67899999999999999999999999764321111 00 0000000 0123457777766
Q ss_pred HHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
+...--.....|+||||+|.+.. ...+.|+..++ +....+.+|++|+.++.+.+
T Consensus 124 ~~~~P~~a~~KVvIIDEad~Ls~-------------~a~naLLKtLE-------------ePp~~~~fIl~tte~~kll~ 177 (598)
T PRK09111 124 VRYRPVSARYKVYIIDEVHMLST-------------AAFNALLKTLE-------------EPPPHVKFIFATTEIRKVPV 177 (598)
T ss_pred HHhchhcCCcEEEEEEChHhCCH-------------HHHHHHHHHHH-------------hCCCCeEEEEEeCChhhhhH
Confidence 54222244568999999987732 12345555454 45667788888888888988
Q ss_pred ccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHh
Q 011983 292 PLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVD 334 (473)
Q Consensus 292 aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~ 334 (473)
.|++ |+..+-+ .|+.++....++.++.+.+ ++.+.+..++.
T Consensus 178 tI~S--Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~ 221 (598)
T PRK09111 178 TVLS--RCQRFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIAR 221 (598)
T ss_pred HHHh--heeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 9988 7755444 5888888888888876654 44444444443
No 136
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.12 E-value=9.1e-10 Score=119.80 Aligned_cols=155 Identities=21% Similarity=0.368 Sum_probs=98.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH----cCCceEEEecCCCCcc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK----KGKMCCLFINDLDAGA 233 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~----~~~p~ILfIDEiDal~ 233 (473)
+++||+||||-|||+||+.||++.|..++.|++++=. +...++.....|..+-. ..+|.||+|||||-..
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvEINASDeR------t~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~ 400 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVEINASDER------TAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP 400 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEEecccccc------cHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc
Confidence 7999999999999999999999999999999999644 34556666666654433 4789999999999432
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc---------CCCCCceEEEecCCCCCCccccccCCC-ceEEE
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ---------EENPRVPIIVTGNDFSTLYAPLIRDGR-MEKFY 303 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~---------~~~~~V~VIaTTN~~~~Ld~aLlR~GR-fd~~i 303 (473)
......++.++. .+..+.-|.-.. ...-.-||||.+|+ |+.+-+|+-| |-..+
T Consensus 401 -------------~~~Vdvilslv~-a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNd---LYaPaLR~Lr~~A~ii 463 (877)
T KOG1969|consen 401 -------------RAAVDVILSLVK-ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICND---LYAPALRPLRPFAEII 463 (877)
T ss_pred -------------HHHHHHHHHHHH-hhcchhhcCcccchhhhhhhccccccCCEEEEecC---ccchhhhhcccceEEE
Confidence 122334444443 111121121000 01134689999998 4555555554 55555
Q ss_pred e-c-CCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 304 W-A-PTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 304 ~-~-P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
+ . |......+-|+.++..++ ++...|..|++.
T Consensus 464 ~f~~p~~s~Lv~RL~~IC~rE~mr~d~~aL~~L~el 499 (877)
T KOG1969|consen 464 AFVPPSQSRLVERLNEICHRENMRADSKALNALCEL 499 (877)
T ss_pred EecCCChhHHHHHHHHHHhhhcCCCCHHHHHHHHHH
Confidence 5 3 555444566666666544 445566655554
No 137
>PRK05642 DNA replication initiation factor; Validated
Probab=99.09 E-value=1.8e-09 Score=105.60 Aligned_cols=161 Identities=12% Similarity=0.141 Sum_probs=94.8
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHH
Q 011983 140 VVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADII 216 (473)
Q Consensus 140 ~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~ 216 (473)
.+...++.+...........++||||+|+|||+|++++++++ +...++++..++... ...+.+..
T Consensus 28 ~a~~~~~~~~~~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~--------~~~~~~~~---- 95 (234)
T PRK05642 28 AALGYVERLCEADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDR--------GPELLDNL---- 95 (234)
T ss_pred HHHHHHHHHhhccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhh--------hHHHHHhh----
Confidence 344444443322222234678999999999999999999863 667788887776532 11111111
Q ss_pred HcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-CCCC---Cccc
Q 011983 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFST---LYAP 292 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~~~~---Ld~a 292 (473)
....+|+|||++.+.++.. ....|..+.+ . ....+..+|+|++ .|.. +.+.
T Consensus 96 --~~~d~LiiDDi~~~~~~~~-----------~~~~Lf~l~n----------~--~~~~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 96 --EQYELVCLDDLDVIAGKAD-----------WEEALFHLFN----------R--LRDSGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred --hhCCEEEEechhhhcCChH-----------HHHHHHHHHH----------H--HHhcCCEEEEeCCCCHHHcCccCcc
Confidence 1235899999998755421 1122333333 0 1122334555554 3433 3678
Q ss_pred cccCCCce--EEEe--cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCC
Q 011983 293 LIRDGRME--KFYW--APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 293 LlR~GRfd--~~i~--~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga 339 (473)
|++ ||. ..+. .|+.++|..+++..... -.++.+.+..++..+.+.
T Consensus 151 L~S--Rl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~~~~~~d 201 (234)
T PRK05642 151 LKS--RLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFILTRGTRS 201 (234)
T ss_pred HHH--HHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 888 874 3333 58999999999955443 356666777777765544
No 138
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.09 E-value=1e-09 Score=115.37 Aligned_cols=153 Identities=16% Similarity=0.181 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-E---------Eeccccc------c-------cCCCC---ChHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-I---------MMSAGEL------E-------SGNAG---EPAKLIRQR 208 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-i---------~vs~s~l------~-------s~~~G---e~~~~ir~~ 208 (473)
+.|..+|||||||+|||++|+++|+.+...- . .-.++.. . ..+-| .....|+++
T Consensus 36 ~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l 115 (397)
T PRK14955 36 RVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLL 115 (397)
T ss_pred CcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHH
Confidence 6788999999999999999999999985521 0 0011110 0 00111 113445554
Q ss_pred HHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC
Q 011983 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288 (473)
Q Consensus 209 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~ 288 (473)
.+.+...--.....|+||||+|.+... -.+.|+..++ +..+...+|++|+++..
T Consensus 116 ~~~~~~~p~~~~~kvvIIdea~~l~~~-------------~~~~LLk~LE-------------ep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 116 RENVRYGPQKGRYRVYIIDEVHMLSIA-------------AFNAFLKTLE-------------EPPPHAIFIFATTELHK 169 (397)
T ss_pred HHHHhhchhcCCeEEEEEeChhhCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEeCChHH
Confidence 443320001334579999999877421 1234555444 44556667777777888
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhc
Q 011983 289 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDT 335 (473)
Q Consensus 289 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~ 335 (473)
|.++|.+ |...+-+ .++.++-...++.++...+ ++.+.+..++..
T Consensus 170 l~~tl~s--R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~ 217 (397)
T PRK14955 170 IPATIAS--RCQRFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRK 217 (397)
T ss_pred hHHHHHH--HHHHhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 8888888 6643323 3677777777777775543 555555555443
No 139
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.08 E-value=2.7e-09 Score=115.52 Aligned_cols=147 Identities=17% Similarity=0.199 Sum_probs=95.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC------------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI------------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+++|+.+.. .++.++++. . ..-..||.+..
T Consensus 34 rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~~~~~~h~dv~eldaas----~--~gId~IRelie 107 (535)
T PRK08451 34 RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQSALENRHIDIIEMDAAS----N--RGIDDIRELIE 107 (535)
T ss_pred CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhhcCCCeEEEecccc----c--cCHHHHHHHHH
Confidence 67888999999999999999999999631 122222111 0 01345565554
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-......|++|||+|.+.. ...+.|+..++ +..+.+.+|++|+++..|.
T Consensus 108 ~~~~~P~~~~~KVvIIDEad~Lt~-------------~A~NALLK~LE-------------Epp~~t~FIL~ttd~~kL~ 161 (535)
T PRK08451 108 QTKYKPSMARFKIFIIDEVHMLTK-------------EAFNALLKTLE-------------EPPSYVKFILATTDPLKLP 161 (535)
T ss_pred HHhhCcccCCeEEEEEECcccCCH-------------HHHHHHHHHHh-------------hcCCceEEEEEECChhhCc
Confidence 432000023456999999987632 12345666555 4456677888888899999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCC--CHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNV--PKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v--~~~~l~~l~~~ 335 (473)
++|++ |...+.+ .++.++-...++.++...++ +.+.+..++..
T Consensus 162 ~tI~S--Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~ 207 (535)
T PRK08451 162 ATILS--RTQHFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARS 207 (535)
T ss_pred hHHHh--hceeEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 99999 7654444 46788888888877776554 44555555544
No 140
>PRK06620 hypothetical protein; Validated
Probab=99.08 E-value=1.7e-09 Score=104.49 Aligned_cols=133 Identities=15% Similarity=0.147 Sum_probs=83.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 237 (473)
..++||||||||||+|++++++..+..++ +.... ....+ ....+|+|||||.+
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~~--~~~~~-----------~~~~~---------~~~d~lliDdi~~~----- 97 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYII--KDIFF-----------NEEIL---------EKYNAFIIEDIENW----- 97 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEEc--chhhh-----------chhHH---------hcCCEEEEeccccc-----
Confidence 67999999999999999999998875332 11100 01111 12478999999932
Q ss_pred CCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC--CccccccCCCceE----EEecCCHHHH
Q 011983 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST--LYAPLIRDGRMEK----FYWAPTREDR 311 (473)
Q Consensus 238 ~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~--Ld~aLlR~GRfd~----~i~~P~~eeR 311 (473)
+ ...+..++..+.+ .+..+||.++..|.. + ++|++ |+.. .+..|+.+++
T Consensus 98 ---~----~~~lf~l~N~~~e---------------~g~~ilits~~~p~~l~l-~~L~S--Rl~~gl~~~l~~pd~~~~ 152 (214)
T PRK06620 98 ---Q----EPALLHIFNIINE---------------KQKYLLLTSSDKSRNFTL-PDLSS--RIKSVLSILLNSPDDELI 152 (214)
T ss_pred ---h----HHHHHHHHHHHHh---------------cCCEEEEEcCCCccccch-HHHHH--HHhCCceEeeCCCCHHHH
Confidence 1 1233333322222 233455555544443 5 77888 8873 3336999999
Q ss_pred HHHHHhhcCCC--CCCHHHHHHHHhcCCCCchh
Q 011983 312 IGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 312 ~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~ 342 (473)
..+++..+... .++.+.+.-++..+++.--.
T Consensus 153 ~~~l~k~~~~~~l~l~~ev~~~L~~~~~~d~r~ 185 (214)
T PRK06620 153 KILIFKHFSISSVTISRQIIDFLLVNLPREYSK 185 (214)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHccCCHHH
Confidence 99998877643 56777777777776555433
No 141
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.07 E-value=2.5e-09 Score=117.81 Aligned_cols=174 Identities=14% Similarity=0.188 Sum_probs=103.8
Q ss_pred hhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE----------ecccc
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM----------MSAGE 192 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~----------vs~s~ 192 (473)
|+++++- ..++...++.+.. .+.|..+|||||||||||++|+++|+.+...--. -.|+.
T Consensus 15 f~eivGQ---------e~i~~~L~~~i~~--~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~ 83 (620)
T PRK14954 15 FADITAQ---------EHITHTIQNSLRM--DRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGE 83 (620)
T ss_pred HHHhcCc---------HHHHHHHHHHHHc--CCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCcc
Confidence 7766653 2233334444432 3788999999999999999999999998652100 01111
Q ss_pred c-----------c--cCCCCC---hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHh
Q 011983 193 L-----------E--SGNAGE---PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNI 256 (473)
Q Consensus 193 l-----------~--s~~~Ge---~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~l 256 (473)
. . ..+.|. ....|+.+.+.+...--.....|+||||+|.+... ..+.|+..
T Consensus 84 C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~-------------a~naLLK~ 150 (620)
T PRK14954 84 CESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTA-------------AFNAFLKT 150 (620)
T ss_pred CHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHH-------------HHHHHHHH
Confidence 0 0 001111 13455555444421001345679999999877321 13456665
Q ss_pred hcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHH
Q 011983 257 ADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLV 333 (473)
Q Consensus 257 ld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~ 333 (473)
++ +..+.+.+|++|+.+..|.+.|++ |...+-+ .++.++-...+..++...+ ++.+.+..++
T Consensus 151 LE-------------ePp~~tv~IL~t~~~~kLl~TI~S--Rc~~vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La 215 (620)
T PRK14954 151 LE-------------EPPPHAIFIFATTELHKIPATIAS--RCQRFNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIA 215 (620)
T ss_pred Hh-------------CCCCCeEEEEEeCChhhhhHHHHh--hceEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 55 445566677777778899999988 6654444 4778887777777766543 5655555544
Q ss_pred hc
Q 011983 334 DT 335 (473)
Q Consensus 334 ~~ 335 (473)
..
T Consensus 216 ~~ 217 (620)
T PRK14954 216 RK 217 (620)
T ss_pred HH
Confidence 33
No 142
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.07 E-value=7.1e-10 Score=113.61 Aligned_cols=145 Identities=16% Similarity=0.204 Sum_probs=91.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc--CCCCChHHHHH----HHHHHHH-HHHHcCCceEEEecCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES--GNAGEPAKLIR----QRYREAA-DIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s--~~~Ge~~~~ir----~~f~~A~-~~~~~~~p~ILfIDEiDa 231 (473)
.+||.||||||||++|+.+|+.++.+|+.+.+..-.. ...|...-..+ ..|..-. -+..... +|+|+|||+.
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~~~~~~~~~~~~~gpl~~~~~-~ill~DEInr 123 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAALLLEPGEFRFVPGPLFAAVR-VILLLDEINR 123 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhhhhccCCeEEEecCCcccccc-eEEEEecccc
Confidence 5999999999999999999999999999999864321 22332211110 0000000 0000111 4999999996
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-----CCCCCccccccCCCceEEEe--
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKFYW-- 304 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-----~~~~Ld~aLlR~GRfd~~i~-- 304 (473)
..+ .+...|++.++ ...+.+++...-.-....+||+|+| ....|++|+++ ||-..++
T Consensus 124 a~p-------------~~q~aLl~~l~-e~~vtv~~~~~~~~~~~f~viaT~Np~e~~g~~~l~eA~ld--Rf~~~~~v~ 187 (329)
T COG0714 124 APP-------------EVQNALLEALE-ERQVTVPGLTTIRLPPPFIVIATQNPGEYEGTYPLPEALLD--RFLLRIYVD 187 (329)
T ss_pred CCH-------------HHHHHHHHHHh-CcEEEECCcCCcCCCCCCEEEEccCccccCCCcCCCHHHHh--hEEEEEecC
Confidence 543 45577777776 4456666552112335677778889 66789999999 9976666
Q ss_pred cC-CHHHHHHHHHhhcC
Q 011983 305 AP-TREDRIGVCSGIFR 320 (473)
Q Consensus 305 ~P-~~eeR~~Il~~~l~ 320 (473)
.| ..++...++.....
T Consensus 188 yp~~~~e~~~i~~~~~~ 204 (329)
T COG0714 188 YPDSEEEERIILARVGG 204 (329)
T ss_pred CCCchHHHHHHHHhCcc
Confidence 57 55556555554443
No 143
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.06 E-value=1.3e-09 Score=116.46 Aligned_cols=178 Identities=13% Similarity=0.119 Sum_probs=107.6
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHH
Q 011983 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI 215 (473)
Q Consensus 141 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~ 215 (473)
....++.+...++ .....++|||++|+|||+|++++++++ +..++++++.++...+...-.... ..+.+....
T Consensus 126 A~~aa~~~a~~~~-~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~-~~~~~~~~~ 203 (450)
T PRK14087 126 AFIAVQTVSKNPG-ISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTH-KEIEQFKNE 203 (450)
T ss_pred HHHHHHHHHhCcC-cccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhh-hHHHHHHHH
Confidence 3344444444444 233569999999999999999999964 467788887776643321111000 111111100
Q ss_pred HHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC----CCCcc
Q 011983 216 IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF----STLYA 291 (473)
Q Consensus 216 ~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~----~~Ld~ 291 (473)
-....+|+|||++.+.++.. . ...+..++-.+.+ .+..||+|+|.+ ..+++
T Consensus 204 --~~~~dvLiIDDiq~l~~k~~--~-----~e~lf~l~N~~~~----------------~~k~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 204 --ICQNDVLIIDDVQFLSYKEK--T-----NEIFFTIFNNFIE----------------NDKQLFFSSDKSPELLNGFDN 258 (450)
T ss_pred --hccCCEEEEeccccccCCHH--H-----HHHHHHHHHHHHH----------------cCCcEEEECCCCHHHHhhccH
Confidence 24577999999998865321 1 1223333322222 223578887764 24577
Q ss_pred ccccCCCceEEEe----cCCHHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHH
Q 011983 292 PLIRDGRMEKFYW----APTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGAL 347 (473)
Q Consensus 292 aLlR~GRfd~~i~----~P~~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal 347 (473)
.|.+ ||..-+. .|+.++|.+|++..+... .++.+.+..++..+.|..-...|++
T Consensus 259 rL~S--R~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~~~l~~evl~~Ia~~~~gd~R~L~gaL 320 (450)
T PRK14087 259 RLIT--RFNMGLSIAIQKLDNKTATAIIKKEIKNQNIKQEVTEEAINFISNYYSDDVRKIKGSV 320 (450)
T ss_pred HHHH--HHhCCceeccCCcCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHccCCCHHHHHHHH
Confidence 8888 8864333 499999999999887653 4677777778887776655554444
No 144
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.05 E-value=2.2e-09 Score=118.14 Aligned_cols=148 Identities=13% Similarity=0.167 Sum_probs=93.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-------------------------EEecccccccCCCCChHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESGNAGEPAKLIRQRY 209 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-------------------------i~vs~s~l~s~~~Ge~~~~ir~~f 209 (473)
+.+..+|||||||+|||++|+++|+.+.... +.++.+ .......+|++.
T Consensus 36 ~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~~i~~~~~~d~~~i~~~------~~~~vd~ir~ii 109 (585)
T PRK14950 36 RVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCRAIAEGSAVDVIEMDAA------SHTSVDDAREII 109 (585)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHHHHhcCCCCeEEEEecc------ccCCHHHHHHHH
Confidence 5678899999999999999999999975321 111111 011234455555
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.+...-......||||||+|.+... ..+.|+..++ +...++.+|++++..+.+
T Consensus 110 ~~~~~~p~~~~~kVvIIDEa~~L~~~-------------a~naLLk~LE-------------epp~~tv~Il~t~~~~kl 163 (585)
T PRK14950 110 ERVQFRPALARYKVYIIDEVHMLSTA-------------AFNALLKTLE-------------EPPPHAIFILATTEVHKV 163 (585)
T ss_pred HHHhhCcccCCeEEEEEeChHhCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEeCChhhh
Confidence 43321111345679999999876321 1234555454 344567778778888888
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhcC
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTF 336 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~ 336 (473)
.+.|++ |+..+.+ .++..+...++..++...+ ++.+.+..++...
T Consensus 164 l~tI~S--R~~~i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s 211 (585)
T PRK14950 164 PATILS--RCQRFDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAA 211 (585)
T ss_pred hHHHHh--ccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 888887 7655444 4778888888887765543 4555555554443
No 145
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.04 E-value=2.9e-09 Score=102.35 Aligned_cols=148 Identities=18% Similarity=0.201 Sum_probs=92.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
..+..++||||||||||++|+++++++ +.+++++++..+.... ..++.. ...+.+|+|||+|.
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~~--------~~~~~~------~~~~~lLvIDdi~~ 101 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQAD--------PEVLEG------LEQADLVCLDDVEA 101 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHhH--------HHHHhh------cccCCEEEEeChhh
Confidence 457789999999999999999999885 4678888887665211 122221 12346999999997
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CCCCc---cccccCCCc--eEEEec
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLY---APLIRDGRM--EKFYWA 305 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~~Ld---~aLlR~GRf--d~~i~~ 305 (473)
+..... ....+...+..+.+ .+..+|+|++. +..++ +.|.+ |+ ...+.+
T Consensus 102 l~~~~~-------~~~~L~~~l~~~~~----------------~~~~iIits~~~~~~~~~~~~~L~~--r~~~~~~i~l 156 (226)
T TIGR03420 102 IAGQPE-------WQEALFHLYNRVRE----------------AGGRLLIAGRAAPAQLPLRLPDLRT--RLAWGLVFQL 156 (226)
T ss_pred hcCChH-------HHHHHHHHHHHHHH----------------cCCeEEEECCCChHHCCcccHHHHH--HHhcCeeEec
Confidence 743210 01122222222111 12246666653 33332 66777 55 355553
Q ss_pred --CCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCch
Q 011983 306 --PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSI 341 (473)
Q Consensus 306 --P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l 341 (473)
|+.+++..+++.+... -.++.+.+..+...++|.-.
T Consensus 157 ~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~gn~r 196 (226)
T TIGR03420 157 PPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSRDMG 196 (226)
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHH
Confidence 6789999999877643 35677788888886555433
No 146
>PHA02244 ATPase-like protein
Probab=99.02 E-value=1.2e-09 Score=112.77 Aligned_cols=135 Identities=17% Similarity=0.189 Sum_probs=82.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc---CCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---GNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..+||+||||||||++|+++|+.++.+|+.++...-.. ++...........|-+| ...+.+|+|||++.+.+
T Consensus 120 ~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A-----~~~GgvLiLDEId~a~p 194 (383)
T PHA02244 120 IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEA-----FKKGGLFFIDEIDASIP 194 (383)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHH-----hhcCCEEEEeCcCcCCH
Confidence 45899999999999999999999999999887421011 11111111111122223 34578999999997643
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----------CCCccccccCCCceEEE
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----------STLYAPLIRDGRMEKFY 303 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----------~~Ld~aLlR~GRfd~~i 303 (473)
. +...|..++++. .+.+.|... ...++..+|+|+|.+ ..|+++++. ||-.+.
T Consensus 195 ~-------------vq~~L~~lLd~r-~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllD--RFv~I~ 257 (383)
T PHA02244 195 E-------------ALIIINSAIANK-FFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLD--RFAPIE 257 (383)
T ss_pred H-------------HHHHHHHHhccC-eEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHh--hcEEee
Confidence 2 223344444422 222222211 124678999999973 678999999 997544
Q ss_pred e-cCCHHHHHHHH
Q 011983 304 W-APTREDRIGVC 315 (473)
Q Consensus 304 ~-~P~~eeR~~Il 315 (473)
+ .|. +....|.
T Consensus 258 ~dyp~-~~E~~i~ 269 (383)
T PHA02244 258 FDYDE-KIEHLIS 269 (383)
T ss_pred CCCCc-HHHHHHh
Confidence 4 576 3333444
No 147
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=2.6e-09 Score=118.85 Aligned_cols=136 Identities=21% Similarity=0.250 Sum_probs=100.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh----------CCCcEEeccccccc--CCCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELES--GNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s--~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
-+|.|+||+|||.+++.+|... +..++.++.+.|.. +|-|+.+..++.+.++.. ...+.|||||
T Consensus 194 PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~----~~~~vILFID 269 (786)
T COG0542 194 PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVE----KSKNVILFID 269 (786)
T ss_pred CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHHhccccccCcHHHHHHHHHHHHh----cCCCeEEEEe
Confidence 4567999999999999999983 56777888887764 689999999999999886 6669999999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-----CCCCCccccccCCCceEE
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-----DFSTLYAPLIRDGRMEKF 302 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-----~~~~Ld~aLlR~GRfd~~ 302 (473)
||+.+.+....... .+... +.|.-.+ ....+-+|++|. ..=.-|+||-| ||..+
T Consensus 270 EiHtiVGAG~~~G~-a~DAa---NiLKPaL---------------ARGeL~~IGATT~~EYRk~iEKD~AL~R--RFQ~V 328 (786)
T COG0542 270 EIHTIVGAGATEGG-AMDAA---NLLKPAL---------------ARGELRCIGATTLDEYRKYIEKDAALER--RFQKV 328 (786)
T ss_pred chhhhcCCCccccc-ccchh---hhhHHHH---------------hcCCeEEEEeccHHHHHHHhhhchHHHh--cCcee
Confidence 99999876331111 12211 1221111 145677887663 23356999999 99988
Q ss_pred Ee-cCCHHHHHHHHHhhcC
Q 011983 303 YW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 303 i~-~P~~eeR~~Il~~~l~ 320 (473)
+. -|+.++-..||+.+-.
T Consensus 329 ~V~EPs~e~ti~ILrGlk~ 347 (786)
T COG0542 329 LVDEPSVEDTIAILRGLKE 347 (786)
T ss_pred eCCCCCHHHHHHHHHHHHH
Confidence 88 7999999999995543
No 148
>PRK08727 hypothetical protein; Validated
Probab=99.01 E-value=5.6e-09 Score=102.05 Aligned_cols=143 Identities=14% Similarity=0.108 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..++||||+|||||+|+.+++++ .|...++++..++. ..+...++. -....+|+|||++.+..
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--------~~~~~~~~~------l~~~dlLiIDDi~~l~~ 107 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--------GRLRDALEA------LEGRSLVALDGLESIAG 107 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh--------hhHHHHHHH------HhcCCEEEEeCcccccC
Confidence 45999999999999999999877 35555666654332 122223321 23457999999998765
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-CCCCC---ccccccCCCceE--EEe--cC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFSTL---YAPLIRDGRMEK--FYW--AP 306 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~~~~L---d~aLlR~GRfd~--~i~--~P 306 (473)
... .. ..|..+.+ . ....+..||+|+| .|..+ ++.|++ ||.. .+. .|
T Consensus 108 ~~~-------~~----~~lf~l~n----------~--~~~~~~~vI~ts~~~p~~l~~~~~dL~S--Rl~~~~~~~l~~~ 162 (233)
T PRK08727 108 QRE-------DE----VALFDFHN----------R--ARAAGITLLYTARQMPDGLALVLPDLRS--RLAQCIRIGLPVL 162 (233)
T ss_pred ChH-------HH----HHHHHHHH----------H--HHHcCCeEEEECCCChhhhhhhhHHHHH--HHhcCceEEecCC
Confidence 421 01 12223322 0 1123455777776 45544 788998 7633 333 58
Q ss_pred CHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCC
Q 011983 307 TREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga 339 (473)
+.++|.+|++.+... -.++.+.+..+++.+.+.
T Consensus 163 ~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~rd 197 (233)
T PRK08727 163 DDVARAAVLRERAQRRGLALDEAAIDWLLTHGERE 197 (233)
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCCC
Confidence 999999999976643 467777888888876544
No 149
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.01 E-value=1.4e-09 Score=109.63 Aligned_cols=122 Identities=16% Similarity=0.227 Sum_probs=84.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC------------------------CCcEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG------------------------INPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg------------------------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+||+||||+|||++|.++|+++. -.++.+++++....- -....++++-+
T Consensus 22 ~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~lel~~s~~~~~~--i~~~~vr~~~~ 99 (325)
T COG0470 22 RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFLELNPSDLRKID--IIVEQVRELAE 99 (325)
T ss_pred CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceEEecccccCCCc--chHHHHHHHHH
Confidence 5677899999999999999999999977 467777777554221 11223333332
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.....-......|++|||+|.+... ..+.|+..++ ++..+.++|++||+++.|-
T Consensus 100 ~~~~~~~~~~~kviiidead~mt~~-------------A~nallk~lE-------------ep~~~~~~il~~n~~~~il 153 (325)
T COG0470 100 FLSESPLEGGYKVVIIDEADKLTED-------------AANALLKTLE-------------EPPKNTRFILITNDPSKIL 153 (325)
T ss_pred HhccCCCCCCceEEEeCcHHHHhHH-------------HHHHHHHHhc-------------cCCCCeEEEEEcCChhhcc
Confidence 2210000245789999999987542 2244555444 6678899999999999999
Q ss_pred cccccCCCceEEEecC
Q 011983 291 APLIRDGRMEKFYWAP 306 (473)
Q Consensus 291 ~aLlR~GRfd~~i~~P 306 (473)
+.+++ |.-.+.+.|
T Consensus 154 ~tI~S--Rc~~i~f~~ 167 (325)
T COG0470 154 PTIRS--RCQRIRFKP 167 (325)
T ss_pred chhhh--cceeeecCC
Confidence 99999 887766644
No 150
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=98.98 E-value=1.6e-09 Score=105.06 Aligned_cols=177 Identities=20% Similarity=0.204 Sum_probs=97.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHH
Q 011983 139 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 139 ~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
+...+.++.....++. .-..++||||+|+|||+|.++++++. +..++++++.++...+.......-...|...
T Consensus 17 ~~a~~~~~~ia~~~~~-~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~~~~~~~~~~~~~~~~~- 94 (219)
T PF00308_consen 17 ELAYAAAKAIAENPGE-RYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIREFADALRDGEIEEFKDR- 94 (219)
T ss_dssp HHHHHHHHHHHHSTTT-SSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHHHHHHHHTTSHHHHHHH-
T ss_pred HHHHHHHHHHHhcCCC-CCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHHHHHHHHcccchhhhhh-
Confidence 3444455554444443 22348999999999999999999883 5677788876655211100000000011111
Q ss_pred HHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec-CCCC---CC
Q 011983 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG-NDFS---TL 289 (473)
Q Consensus 214 ~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT-N~~~---~L 289 (473)
-....+|+||+++.+.++. .....|..+.+ .. ...+..+|+|+ ..|. .+
T Consensus 95 ----~~~~DlL~iDDi~~l~~~~-----------~~q~~lf~l~n----------~~--~~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 95 ----LRSADLLIIDDIQFLAGKQ-----------RTQEELFHLFN----------RL--IESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp ----HCTSSEEEEETGGGGTTHH-----------HHHHHHHHHHH----------HH--HHTTSEEEEEESS-TTTTTTS
T ss_pred ----hhcCCEEEEecchhhcCch-----------HHHHHHHHHHH----------HH--HhhCCeEEEEeCCCCcccccc
Confidence 2457799999999886531 12233334333 11 01233566666 3444 35
Q ss_pred ccccccCCCceE--EEe--cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCCCchhhHHH
Q 011983 290 YAPLIRDGRMEK--FYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGA 346 (473)
Q Consensus 290 d~aLlR~GRfd~--~i~--~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~f~ga 346 (473)
++.|.+ ||.. .+. .|+.+.|.+|++.+.... .++.+.+.-++..++..--...|+
T Consensus 148 ~~~L~S--Rl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 148 LPDLRS--RLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHH--HHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred Chhhhh--hHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcCCHHHHHHH
Confidence 677888 7755 333 599999999999877653 466667777777765544343333
No 151
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.97 E-value=9.7e-09 Score=99.33 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=88.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
..+..++|+||||||||+||+++++++ +.+++.+++.++.. .+. . .....+|+|||+|.
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~------------~~~--~----~~~~~~liiDdi~~ 101 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL------------AFD--F----DPEAELYAVDDVER 101 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH------------HHh--h----cccCCEEEEeChhh
Confidence 456789999999999999999999985 66777787765431 111 1 23467999999997
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC---CCccccccCCCce--EEEe--
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRME--KFYW-- 304 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~---~Ld~aLlR~GRfd--~~i~-- 304 (473)
+... . ...|..+++ .. .......+|.|++.+. .+.+.|.+ ||. ..+.
T Consensus 102 l~~~----~---------~~~L~~~~~----------~~-~~~~~~~vl~~~~~~~~~~~l~~~L~s--r~~~~~~i~l~ 155 (227)
T PRK08903 102 LDDA----Q---------QIALFNLFN----------RV-RAHGQGALLVAGPAAPLALPLREDLRT--RLGWGLVYELK 155 (227)
T ss_pred cCch----H---------HHHHHHHHH----------HH-HHcCCcEEEEeCCCCHHhCCCCHHHHH--HHhcCeEEEec
Confidence 6321 1 122333332 00 0122333555554322 34566776 663 4555
Q ss_pred cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCCchh
Q 011983 305 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga~l~ 342 (473)
.|+.+++..++..+... -.++.+.+..+...++|.-..
T Consensus 156 pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~gn~~~ 195 (227)
T PRK08903 156 PLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRRDMPS 195 (227)
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccCCHHH
Confidence 47777888888876654 456777788888866555443
No 152
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=4.8e-09 Score=107.67 Aligned_cols=135 Identities=14% Similarity=0.145 Sum_probs=93.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 209 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 209 (473)
.+.|..+||+||+|+|||++|+++|+.+... ++.+....- ++ .-....||++.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~-~~--~i~id~iR~l~ 95 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEA-DK--TIKVDQVRELV 95 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCC-CC--CCCHHHHHHHH
Confidence 4789999999999999999999999996431 111111000 00 01245677766
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.+...-......|++||++|.+-. ...+.|+..++ ++.+++.+|.+|++++.|
T Consensus 96 ~~~~~~~~~~~~kv~iI~~a~~m~~-------------~aaNaLLK~LE-------------EPp~~~~fiL~t~~~~~l 149 (328)
T PRK05707 96 SFVVQTAQLGGRKVVLIEPAEAMNR-------------NAANALLKSLE-------------EPSGDTVLLLISHQPSRL 149 (328)
T ss_pred HHHhhccccCCCeEEEECChhhCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEECChhhC
Confidence 6554222245677999999997743 22356666666 566788999999999999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
.|.+++ |+..+.+ .|+.++-.+.+....
T Consensus 150 l~TI~S--Rc~~~~~~~~~~~~~~~~L~~~~ 178 (328)
T PRK05707 150 LPTIKS--RCQQQACPLPSNEESLQWLQQAL 178 (328)
T ss_pred cHHHHh--hceeeeCCCcCHHHHHHHHHHhc
Confidence 999999 8877655 578888887776543
No 153
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=7.9e-09 Score=107.50 Aligned_cols=139 Identities=19% Similarity=0.266 Sum_probs=92.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-----cEEecccccccCC---------------CCChHHHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN-----PIMMSAGELESGN---------------AGEPAKLIRQRYREAAD 214 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~-----~i~vs~s~l~s~~---------------~Ge~~~~ir~~f~~A~~ 214 (473)
..|..+++|||||||||.+++.+++++.-. +++++|-...+.+ .|-+ ..++|+...+
T Consensus 40 ~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~~~~~~p~~g~~---~~~~~~~l~~ 116 (366)
T COG1474 40 ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILNKLGKVPLTGDS---SLEILKRLYD 116 (366)
T ss_pred CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHHHcCCCCCCCCc---hHHHHHHHHH
Confidence 456679999999999999999999996443 7888885543221 1111 1123333333
Q ss_pred HHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC---CCCc
Q 011983 215 IIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLY 290 (473)
Q Consensus 215 ~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~---~~Ld 290 (473)
.+. .....||++||+|.+..+.+ ..|.+|+. +......+|.+|+.+|.. +.||
T Consensus 117 ~~~~~~~~~IvvLDEid~L~~~~~-------------~~LY~L~r----------~~~~~~~~v~vi~i~n~~~~~~~ld 173 (366)
T COG1474 117 NLSKKGKTVIVILDEVDALVDKDG-------------EVLYSLLR----------APGENKVKVSIIAVSNDDKFLDYLD 173 (366)
T ss_pred HHHhcCCeEEEEEcchhhhccccc-------------hHHHHHHh----------hccccceeEEEEEEeccHHHHHHhh
Confidence 333 46788999999999987632 34445444 222335778899999886 4688
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
+-+.+.-......+ ..+.+|-..|++.-.
T Consensus 174 ~rv~s~l~~~~I~F~pY~a~el~~Il~~R~ 203 (366)
T COG1474 174 PRVKSSLGPSEIVFPPYTAEELYDILRERV 203 (366)
T ss_pred hhhhhccCcceeeeCCCCHHHHHHHHHHHH
Confidence 88877433334333 358999999998444
No 154
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.96 E-value=6.3e-09 Score=115.09 Aligned_cols=163 Identities=15% Similarity=0.221 Sum_probs=94.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc-------cCCCCChHHHHHHHHHHHHHH---
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE-------SGNAGEPAKLIRQRYREAADI--- 215 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~-------s~~~Ge~~~~ir~~f~~A~~~--- 215 (473)
.|..++|+||||||||++|+++++.. +.+|+.+++..+. ..+.|.... ..+..+...
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~---~~~~~a~~~l~~ 250 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPREVTNPLLGSVHD---PIYQGARRDLAE 250 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHHHhHHhcCCccH---HHHHHHHHHHHH
Confidence 35679999999999999999998765 3568888876552 112221111 111122111
Q ss_pred ----------HHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcc---------------
Q 011983 216 ----------IKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN--------------- 270 (473)
Q Consensus 216 ----------~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~--------------- 270 (473)
+......+|||||++.+-.. ....|+.++++.+..-..+.|.
T Consensus 251 ~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~-------------~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~ 317 (615)
T TIGR02903 251 TGVPEPKTGLVTDAHGGVLFIDEIGELDPL-------------LQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFE 317 (615)
T ss_pred cCCCchhcCchhhcCCCeEEEeccccCCHH-------------HHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcc
Confidence 11234569999999866321 2234445444221000011110
Q ss_pred cCCCCCceEEE-ecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 271 QEENPRVPIIV-TGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 271 ~~~~~~V~VIa-TTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
.....++++|+ ||+.++.++++|++ ||..+.+ .++.++...|++.++...+ ++.+ +..+...++
T Consensus 318 ~~~~~~~VLI~aTt~~~~~l~~aLrS--R~~~i~~~pls~edi~~Il~~~a~~~~v~ls~e-al~~L~~ys 385 (615)
T TIGR02903 318 EGAPADFVLIGATTRDPEEINPALRS--RCAEVFFEPLTPEDIALIVLNAAEKINVHLAAG-VEELIARYT 385 (615)
T ss_pred cCccceEEEEEeccccccccCHHHHh--ceeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHH-HHHHHHHCC
Confidence 01122344554 66788999999998 9987665 4688999999998877543 4443 444444443
No 155
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.96 E-value=9.3e-09 Score=113.60 Aligned_cols=147 Identities=12% Similarity=0.153 Sum_probs=95.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------CcEEecccccccCCCCChHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------------------NPIMMSAGELESGNAGEPAKLIRQRY 209 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~-------------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f 209 (473)
+.|..+|||||+|+|||++|+++|+.+.. +++.+++.. ......|+.+.
T Consensus 37 ~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC~~~~~~~~~n~~~ld~~~------~~~vd~Ir~li 110 (614)
T PRK14971 37 KLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESCVAFNEQRSYNIHELDAAS------NNSVDDIRNLI 110 (614)
T ss_pred CCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHHHHHhcCCCCceEEecccc------cCCHHHHHHHH
Confidence 67889999999999999999999998752 222222211 11134566666
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
..+...--.....|++|||+|.+.. .....|+..++ +......+|++|+....|
T Consensus 111 ~~~~~~P~~~~~KVvIIdea~~Ls~-------------~a~naLLK~LE-------------epp~~tifIL~tt~~~kI 164 (614)
T PRK14971 111 EQVRIPPQIGKYKIYIIDEVHMLSQ-------------AAFNAFLKTLE-------------EPPSYAIFILATTEKHKI 164 (614)
T ss_pred HHHhhCcccCCcEEEEEECcccCCH-------------HHHHHHHHHHh-------------CCCCCeEEEEEeCCchhc
Confidence 5553111133456999999997732 12345666665 445666777777777889
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--HHHHHHHHhc
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 335 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 335 (473)
-++|++ |+..+-+ .++.++-...++.++...++. .+.+..++..
T Consensus 165 l~tI~S--Rc~iv~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~ 211 (614)
T PRK14971 165 LPTILS--RCQIFDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQK 211 (614)
T ss_pred hHHHHh--hhheeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 999998 7755444 477888888888777665554 4444444443
No 156
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=4.5e-08 Score=101.89 Aligned_cols=138 Identities=14% Similarity=0.124 Sum_probs=89.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-------E----E--ec--c-----------cccc--cC-CCCC----
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-------I----M--MS--A-----------GELE--SG-NAGE---- 200 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-------i----~--vs--~-----------s~l~--s~-~~Ge---- 200 (473)
.+.|..+||+||+|+||+++|.++|+.+-..- . . +. + +++. .. +.+.
T Consensus 38 ~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~ 117 (365)
T PRK07471 38 GRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRL 117 (365)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHHHHHccCCCCeEEEecccccccccc
Confidence 37889999999999999999999999852110 0 0 00 0 0000 00 0010
Q ss_pred ----hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCC
Q 011983 201 ----PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276 (473)
Q Consensus 201 ----~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~ 276 (473)
....||++-+.+........+.|++|||+|.+-. ...+.|+..++ +...+
T Consensus 118 ~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m~~-------------~aanaLLK~LE-------------epp~~ 171 (365)
T PRK07471 118 RTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEMNA-------------NAANALLKVLE-------------EPPAR 171 (365)
T ss_pred cccccHHHHHHHHHHhCcCcccCCCEEEEEechHhcCH-------------HHHHHHHHHHh-------------cCCCC
Confidence 1233555444433222256788999999996622 22345666565 45567
Q ss_pred ceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 277 VPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 277 V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
+.+|++|++++.+.+.+++ |+..+-+ .|+.++-.+++....
T Consensus 172 ~~~IL~t~~~~~llpti~S--Rc~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 172 SLFLLVSHAPARLLPTIRS--RCRKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred eEEEEEECCchhchHHhhc--cceEEECCCCCHHHHHHHHHHhc
Confidence 7888999999999999888 8866665 578898888887754
No 157
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.92 E-value=6.5e-08 Score=100.20 Aligned_cols=153 Identities=14% Similarity=0.093 Sum_probs=94.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------cEEe--cc--------------cccc---cCC-C--C-----C
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMM--SA--------------GELE---SGN-A--G-----E 200 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------~i~v--s~--------------s~l~---s~~-~--G-----e 200 (473)
.+.|..+||+||+|+|||++|+.+|+.+... .... .+ +++. ..+ . | -
T Consensus 42 grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I 121 (351)
T PRK09112 42 GKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAI 121 (351)
T ss_pred CCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCCHHHHHHHcCCCCCEEEeecccccccccccccC
Confidence 3778999999999999999999999996431 0000 00 0010 000 0 0 0
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEE
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VI 280 (473)
+...+|++-+........+...|++|||+|.+-.. ..+.|+..++ +...++.+|
T Consensus 122 ~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l~~~-------------aanaLLk~LE-------------Epp~~~~fi 175 (351)
T PRK09112 122 TVDEIRRVGHFLSQTSGDGNWRIVIIDPADDMNRN-------------AANAILKTLE-------------EPPARALFI 175 (351)
T ss_pred CHHHHHHHHHHhhhccccCCceEEEEEchhhcCHH-------------HHHHHHHHHh-------------cCCCCceEE
Confidence 12344444333221112456789999999977321 1244666565 445667778
Q ss_pred EecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHh
Q 011983 281 VTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVD 334 (473)
Q Consensus 281 aTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~ 334 (473)
+.|+.++.|.|.+++ |+..+-. .|+.++-.+++.......+++.+.+..+..
T Consensus 176 Lit~~~~~llptIrS--Rc~~i~l~pl~~~~~~~~L~~~~~~~~~~~~~~~~i~~ 228 (351)
T PRK09112 176 LISHSSGRLLPTIRS--RCQPISLKPLDDDELKKALSHLGSSQGSDGEITEALLQ 228 (351)
T ss_pred EEECChhhccHHHHh--hccEEEecCCCHHHHHHHHHHhhcccCCCHHHHHHHHH
Confidence 878889999999988 8743333 578999999988754333355555544443
No 158
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=98.90 E-value=5e-09 Score=112.51 Aligned_cols=178 Identities=13% Similarity=0.208 Sum_probs=116.2
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc--EEeccccc------
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAGEL------ 193 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~--i~vs~s~l------ 193 (473)
.|++++|- ..+...+++.+.. .+.+.+.||.||.|||||++||.+|+.++..- ..--|+++
T Consensus 14 ~F~evvGQ---------e~v~~~L~nal~~--~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck~I 82 (515)
T COG2812 14 TFDDVVGQ---------EHVVKTLSNALEN--GRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCKEI 82 (515)
T ss_pred cHHHhccc---------HHHHHHHHHHHHh--CcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhHhh
Confidence 48888765 3344444444433 36788999999999999999999999976431 11111111
Q ss_pred ccC-CC---------CChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcc
Q 011983 194 ESG-NA---------GEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV 263 (473)
Q Consensus 194 ~s~-~~---------Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v 263 (473)
..+ ++ ...-..+|++.+++...-...++.|.+|||++-+.. ...+.|+.-++
T Consensus 83 ~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~-------------~afNALLKTLE----- 144 (515)
T COG2812 83 NEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSK-------------QAFNALLKTLE----- 144 (515)
T ss_pred hcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhH-------------HHHHHHhcccc-----
Confidence 111 00 012356777777663222255667999999986632 12344555344
Q ss_pred cCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCC--HHHHHHHHhcCCC
Q 011983 264 QLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVP--KEDIVKLVDTFPG 338 (473)
Q Consensus 264 ~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~~sg 338 (473)
++..+|.+|.+|-.+..+++.+++ |+-++-+ .-+.++....+..++.++++. .+.+..++....|
T Consensus 145 --------EPP~hV~FIlATTe~~Kip~TIlS--Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G 212 (515)
T COG2812 145 --------EPPSHVKFILATTEPQKIPNTILS--RCQRFDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG 212 (515)
T ss_pred --------cCccCeEEEEecCCcCcCchhhhh--ccccccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC
Confidence 678899999999999999999998 8777666 466678888888888876654 4455555555444
No 159
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=98.89 E-value=3.2e-08 Score=96.88 Aligned_cols=158 Identities=16% Similarity=0.196 Sum_probs=100.4
Q ss_pred HHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHc
Q 011983 142 VHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK 218 (473)
Q Consensus 142 ~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~ 218 (473)
..+++|........+...+||||++|||||+++|++.++ -|+.+|.+...+|.. +..+++..+ ..
T Consensus 37 ~~l~~Nt~~Fl~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~~---------l~~l~~~l~---~~ 104 (249)
T PF05673_consen 37 EALIENTEQFLQGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLGD---------LPELLDLLR---DR 104 (249)
T ss_pred HHHHHHHHHHHcCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhcc---------HHHHHHHHh---cC
Confidence 334444333223467899999999999999999999997 477888888776652 333444321 14
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccC--
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD-- 296 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~-- 296 (473)
...-|||+||+- +...+ .-...|..+++ |- ......||+|.+|+|+...+++.....
T Consensus 105 ~~kFIlf~DDLs--Fe~~d----------~~yk~LKs~Le--------Gg-le~~P~NvliyATSNRRHLv~E~~~d~~~ 163 (249)
T PF05673_consen 105 PYKFILFCDDLS--FEEGD----------TEYKALKSVLE--------GG-LEARPDNVLIYATSNRRHLVPESFSDRED 163 (249)
T ss_pred CCCEEEEecCCC--CCCCc----------HHHHHHHHHhc--------Cc-cccCCCcEEEEEecchhhccchhhhhccC
Confidence 457799999864 32211 11244555555 22 235578999999999987766544331
Q ss_pred -------------------CCceEEEe--cCCHHHHHHHHHhhcCCCC--CCHHHHHHH
Q 011983 297 -------------------GRMEKFYW--APTREDRIGVCSGIFRTDN--VPKEDIVKL 332 (473)
Q Consensus 297 -------------------GRfd~~i~--~P~~eeR~~Il~~~l~~~~--v~~~~l~~l 332 (473)
-||...+. .|+.++=.+|+++++...+ ++.+++..-
T Consensus 164 ~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~ 222 (249)
T PF05673_consen 164 IQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQE 222 (249)
T ss_pred CCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 15655555 4788888888888876543 333444433
No 160
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=98.87 E-value=2.1e-09 Score=95.42 Aligned_cols=118 Identities=14% Similarity=0.164 Sum_probs=62.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc-cccc-CCCCChHHHHHHHHHHHHHHHH-c---CCceEEEecCCCCc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG-ELES-GNAGEPAKLIRQRYREAADIIK-K---GKMCCLFINDLDAG 232 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s-~l~s-~~~Ge~~~~ir~~f~~A~~~~~-~---~~p~ILfIDEiDal 232 (473)
++||+|+||+|||++|+++|+.+|..|..|.+. ++.- ...|. .+|+......+ . --..|+|+|||...
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~------~v~~~~~~~f~~~~GPif~~ill~DEiNra 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGF------PVYDQETGEFEFRPGPIFTNILLADEINRA 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEE------EEEETTTTEEEEEE-TT-SSEEEEETGGGS
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceee------eeeccCCCeeEeecChhhhceeeecccccC
Confidence 489999999999999999999999999888764 2320 00010 01110000000 0 11249999999855
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 299 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRf 299 (473)
.+ .+++.|++.+. +..|.++|... .-.....||+|-|..+ .|+++++. ||
T Consensus 75 pp-------------ktQsAlLeam~-Er~Vt~~g~~~-~lp~pf~ViATqNp~e~~Gty~Lpea~~D--RF 129 (131)
T PF07726_consen 75 PP-------------KTQSALLEAME-ERQVTIDGQTY-PLPDPFFVIATQNPVEQEGTYPLPEAQLD--RF 129 (131)
T ss_dssp -H-------------HHHHHHHHHHH-HSEEEETTEEE-E--SS-EEEEEE-TT--S------HHHHT--TS
T ss_pred CH-------------HHHHHHHHHHH-cCeEEeCCEEE-ECCCcEEEEEecCccccCceecCCHHHhc--cc
Confidence 43 34577777776 46677776511 2234577888889876 68888888 76
No 161
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=1e-07 Score=96.38 Aligned_cols=91 Identities=22% Similarity=0.245 Sum_probs=66.8
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec----CCCCCCcccccc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIR 295 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT----N~~~~Ld~aLlR 295 (473)
+..||||||||+++.+.+. ...++..+-|+.-|+-|.+ .+.|+.. |-.....++++|++. ..|+.|-|.|.-
T Consensus 250 ~~GIvFIDEIDKIa~~~~~-g~~dvSREGVQRDlLPlvE-GstV~TK--yG~VkTdHILFIasGAFh~sKPSDLiPELQG 325 (444)
T COG1220 250 QNGIVFIDEIDKIAKRGGS-GGPDVSREGVQRDLLPLVE-GSTVSTK--YGPVKTDHILFIASGAFHVAKPSDLIPELQG 325 (444)
T ss_pred hcCeEEEehhhHHHhcCCC-CCCCcchhhhccccccccc-Cceeecc--ccccccceEEEEecCceecCChhhcChhhcC
Confidence 4569999999999987542 2236777788888888776 3333322 333678899999977 678888888865
Q ss_pred CCCceEEEec--CCHHHHHHHHH
Q 011983 296 DGRMEKFYWA--PTREDRIGVCS 316 (473)
Q Consensus 296 ~GRfd~~i~~--P~~eeR~~Il~ 316 (473)
||-..+.+ .+.++-..||.
T Consensus 326 --RfPIRVEL~~Lt~~Df~rILt 346 (444)
T COG1220 326 --RFPIRVELDALTKEDFERILT 346 (444)
T ss_pred --CCceEEEcccCCHHHHHHHHc
Confidence 99998884 78888777764
No 162
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.83 E-value=4.5e-08 Score=99.63 Aligned_cols=148 Identities=14% Similarity=0.130 Sum_probs=94.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC--------CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGI--------NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~--------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 225 (473)
.+.|..+|||||+|+|||++|+++|+.+-. .++.+... .++.. .-..||.+.+.+...--.....|++
T Consensus 23 ~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~--~~~~i--~v~~ir~~~~~~~~~p~~~~~kv~i 98 (313)
T PRK05564 23 NRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPI--NKKSI--GVDDIRNIIEEVNKKPYEGDKKVII 98 (313)
T ss_pred CCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccc--cCCCC--CHHHHHHHHHHHhcCcccCCceEEE
Confidence 367889999999999999999999998522 12222211 11111 2234666555442111145567999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW- 304 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~- 304 (473)
||++|.+-. ...+.|+..++ ++.+++.+|.+|++++.|.+.+++ |...+.+
T Consensus 99 I~~ad~m~~-------------~a~naLLK~LE-------------epp~~t~~il~~~~~~~ll~TI~S--Rc~~~~~~ 150 (313)
T PRK05564 99 IYNSEKMTE-------------QAQNAFLKTIE-------------EPPKGVFIILLCENLEQILDTIKS--RCQIYKLN 150 (313)
T ss_pred EechhhcCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEeCChHhCcHHHHh--hceeeeCC
Confidence 999986632 12356666555 556778888888889999999999 7754444
Q ss_pred cCCHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q 011983 305 APTREDRIGVCSGIFRTDNVPKEDIVKLVDT 335 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~ 335 (473)
.|+.++-...+...+. .++.+.+..++..
T Consensus 151 ~~~~~~~~~~l~~~~~--~~~~~~~~~l~~~ 179 (313)
T PRK05564 151 RLSKEEIEKFISYKYN--DIKEEEKKSAIAF 179 (313)
T ss_pred CcCHHHHHHHHHHHhc--CCCHHHHHHHHHH
Confidence 4777877777765543 4556655555443
No 163
>PRK08116 hypothetical protein; Validated
Probab=98.80 E-value=2.6e-08 Score=99.52 Aligned_cols=100 Identities=25% Similarity=0.407 Sum_probs=63.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHH-----HHHHHH-cCCceEEEe
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE-----AADIIK-KGKMCCLFI 226 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~-----A~~~~~-~~~p~ILfI 226 (473)
.+.+++|||+||||||+||.+||+++ +.+++.++.+++... ++..|.. ..+.++ -....+|+|
T Consensus 113 ~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~--------i~~~~~~~~~~~~~~~~~~l~~~dlLvi 184 (268)
T PRK08116 113 ENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNR--------IKSTYKSSGKEDENEIIRSLVNADLLIL 184 (268)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH--------HHHHHhccccccHHHHHHHhcCCCEEEE
Confidence 45689999999999999999999985 778888887776532 2222210 001111 234569999
Q ss_pred cCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 227 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 227 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
||+...... ......|.++++. ....+.++|+|||.+
T Consensus 185 DDlg~e~~t-----------~~~~~~l~~iin~------------r~~~~~~~IiTsN~~ 221 (268)
T PRK08116 185 DDLGAERDT-----------EWAREKVYNIIDS------------RYRKGLPTIVTTNLS 221 (268)
T ss_pred ecccCCCCC-----------HHHHHHHHHHHHH------------HHHCCCCEEEECCCC
Confidence 999642111 1222445555551 223556899999975
No 164
>PRK04132 replication factor C small subunit; Provisional
Probab=98.80 E-value=3.2e-08 Score=112.04 Aligned_cols=144 Identities=16% Similarity=0.140 Sum_probs=104.6
Q ss_pred EEEEc--CCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHc--CCceEEEecCCC
Q 011983 160 LGIWG--GKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKK--GKMCCLFINDLD 230 (473)
Q Consensus 160 lLL~G--PPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~--~~p~ILfIDEiD 230 (473)
-+..| |++.|||++|+++|+++ +.+++.+++++..+ ...||++.+++...... .+..|+||||+|
T Consensus 567 ~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg------id~IR~iIk~~a~~~~~~~~~~KVvIIDEaD 640 (846)
T PRK04132 567 NFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEAD 640 (846)
T ss_pred hhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc------HHHHHHHHHHHHhcCCcCCCCCEEEEEECcc
Confidence 34558 99999999999999997 56899999996432 34677777655421111 134799999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRE 309 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~e 309 (473)
.+-. ..++.|+.+++ ++..++.+|++||+++.+.++|++ |+..+-+ .|+.+
T Consensus 641 ~Lt~-------------~AQnALLk~lE-------------ep~~~~~FILi~N~~~kIi~tIrS--RC~~i~F~~ls~~ 692 (846)
T PRK04132 641 ALTQ-------------DAQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDE 692 (846)
T ss_pred cCCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChhhCchHHhh--hceEEeCCCCCHH
Confidence 8742 12366777666 556788999999999999999999 8765555 57888
Q ss_pred HHHHHHHhhcCCCC--CCHHHHHHHHhcCC
Q 011983 310 DRIGVCSGIFRTDN--VPKEDIVKLVDTFP 337 (473)
Q Consensus 310 eR~~Il~~~l~~~~--v~~~~l~~l~~~~s 337 (473)
+-..+++.++...+ ++.+.+..++....
T Consensus 693 ~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~ 722 (846)
T PRK04132 693 DIAKRLRYIAENEGLELTEEGLQAILYIAE 722 (846)
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHcC
Confidence 88888888877655 45666665555433
No 165
>PRK09087 hypothetical protein; Validated
Probab=98.80 E-value=3.8e-08 Score=95.90 Aligned_cols=134 Identities=17% Similarity=0.149 Sum_probs=82.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 237 (473)
.-++||||+|+|||+|++++|+..+..+ ++...+.. ..+... ...+|+|||+|.+..
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~~~~~--i~~~~~~~-----------~~~~~~-------~~~~l~iDDi~~~~~--- 101 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKSDALL--IHPNEIGS-----------DAANAA-------AEGPVLIEDIDAGGF--- 101 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhcCCEE--ecHHHcch-----------HHHHhh-------hcCeEEEECCCCCCC---
Confidence 3489999999999999999999876553 33322221 111211 125788999996521
Q ss_pred CCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CC---CCccccccCCCceE--EEe--cCCHH
Q 011983 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS---TLYAPLIRDGRMEK--FYW--APTRE 309 (473)
Q Consensus 238 ~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~---~Ld~aLlR~GRfd~--~i~--~P~~e 309 (473)
++ ..+...+..+. ..+..+|+|++. |. ...+.|++ |+.. .+. .|+.+
T Consensus 102 --~~-----~~lf~l~n~~~----------------~~g~~ilits~~~p~~~~~~~~dL~S--Rl~~gl~~~l~~pd~e 156 (226)
T PRK09087 102 --DE-----TGLFHLINSVR----------------QAGTSLLMTSRLWPSSWNVKLPDLKS--RLKAATVVEIGEPDDA 156 (226)
T ss_pred --CH-----HHHHHHHHHHH----------------hCCCeEEEECCCChHHhccccccHHH--HHhCCceeecCCCCHH
Confidence 11 12333332222 223445555543 33 24677888 8853 333 59999
Q ss_pred HHHHHHHhhcCCC--CCCHHHHHHHHhcCCCC
Q 011983 310 DRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 310 eR~~Il~~~l~~~--~v~~~~l~~l~~~~sga 339 (473)
+|.+|++..+... .++.+.+..++..+.+.
T Consensus 157 ~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r~ 188 (226)
T PRK09087 157 LLSQVIFKLFADRQLYVDPHVVYYLVSRMERS 188 (226)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHhhhh
Confidence 9999999888654 46666777777765533
No 166
>PRK12377 putative replication protein; Provisional
Probab=98.80 E-value=3.4e-08 Score=97.56 Aligned_cols=99 Identities=14% Similarity=0.169 Sum_probs=64.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHH---HHHHH-cCCceEEEecCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA---ADIIK-KGKMCCLFINDL 229 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A---~~~~~-~~~p~ILfIDEi 229 (473)
..+++|+||||||||+||.+||+++ |..++.++..++.. .++..|... .+.++ -....+|+|||+
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~--------~l~~~~~~~~~~~~~l~~l~~~dLLiIDDl 172 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMS--------RLHESYDNGQSGEKFLQELCKVDLLVLDEI 172 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHH--------HHHHHHhccchHHHHHHHhcCCCEEEEcCC
Confidence 4689999999999999999999996 66777777776653 233333211 01222 356889999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
....... .....|.++++. ......++|+|||..
T Consensus 173 g~~~~s~-----------~~~~~l~~ii~~------------R~~~~~ptiitSNl~ 206 (248)
T PRK12377 173 GIQRETK-----------NEQVVLNQIIDR------------RTASMRSVGMLTNLN 206 (248)
T ss_pred CCCCCCH-----------HHHHHHHHHHHH------------HHhcCCCEEEEcCCC
Confidence 7653211 122445555551 234567899999975
No 167
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.75 E-value=2.4e-08 Score=102.51 Aligned_cols=114 Identities=21% Similarity=0.274 Sum_probs=67.5
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHH-HHH---HH
Q 011983 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQR-YRE---AA 213 (473)
Q Consensus 141 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~-f~~---A~ 213 (473)
+...+++|..... ....+++||||||||||+|+.+||+++ |..++.++..++.... +.. |.. ..
T Consensus 168 ~~~~~~~f~~~f~-~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l--------~~~~~~~~~~~~ 238 (329)
T PRK06835 168 ILEKCKNFIENFD-KNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEIL--------REIRFNNDKELE 238 (329)
T ss_pred HHHHHHHHHHHHh-ccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHH--------HHHHhccchhHH
Confidence 3344444444322 223789999999999999999999995 7788888887765321 111 110 00
Q ss_pred HHHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 214 DIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 214 ~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
..++ -....+|+|||+...... ......|.++++. ....+.++|+|||..
T Consensus 239 ~~~~~l~~~DLLIIDDlG~e~~t-----------~~~~~~Lf~iin~------------R~~~~k~tIiTSNl~ 289 (329)
T PRK06835 239 EVYDLLINCDLLIIDDLGTEKIT-----------EFSKSELFNLINK------------RLLRQKKMIISTNLS 289 (329)
T ss_pred HHHHHhccCCEEEEeccCCCCCC-----------HHHHHHHHHHHHH------------HHHCCCCEEEECCCC
Confidence 0011 235679999999765322 1122344454441 122345789999974
No 168
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=98.75 E-value=1e-08 Score=105.31 Aligned_cols=83 Identities=19% Similarity=0.236 Sum_probs=56.4
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCceEEEecCCCC-CCccccccCCC
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRDGR 298 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V~VIaTTN~~~-~Ld~aLlR~GR 298 (473)
..+|||||++.+-. .+.+.|++.+++.+ .++.+|.. .....++++|+|+|..+ .++++|+. |
T Consensus 129 ~GiL~lDEInrl~~-------------~~q~~Lle~mee~~v~v~r~G~~-~~~p~rfiviAt~NP~e~~l~~aLld--R 192 (334)
T PRK13407 129 RGYLYIDEVNLLED-------------HIVDLLLDVAQSGENVVEREGLS-IRHPARFVLVGSGNPEEGELRPQLLD--R 192 (334)
T ss_pred CCeEEecChHhCCH-------------HHHHHHHHHHHcCCeEEEECCeE-EecCCCEEEEecCCcccCCCCHHHHh--h
Confidence 46899999997632 34466777666433 23445541 12345677888888654 68999999 9
Q ss_pred ceEEEec--C-CHHHHHHHHHhhc
Q 011983 299 MEKFYWA--P-TREDRIGVCSGIF 319 (473)
Q Consensus 299 fd~~i~~--P-~~eeR~~Il~~~l 319 (473)
|...+.+ | +.++|.+|++...
T Consensus 193 F~~~v~v~~~~~~~e~~~il~~~~ 216 (334)
T PRK13407 193 FGLSVEVRSPRDVETRVEVIRRRD 216 (334)
T ss_pred cceEEEcCCCCcHHHHHHHHHHhh
Confidence 9988884 4 4599999998754
No 169
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=8.2e-08 Score=98.60 Aligned_cols=138 Identities=12% Similarity=0.089 Sum_probs=89.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRY 209 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f 209 (473)
.+.|..+|||||+|+|||++|+++|+.+-.. +..+... +.. -+-..+|.+.
T Consensus 25 ~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~hpD~~~i~~~---~~~--i~id~ir~l~ 99 (329)
T PRK08058 25 NRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGNHPDVHLVAPD---GQS--IKKDQIRYLK 99 (329)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEeccc---ccc--CCHHHHHHHH
Confidence 3788999999999999999999999995321 1111111 000 1123455544
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.+...--.....|++|||+|.+-. ...+.|+..++ ++.+++.+|.+|+.+..|
T Consensus 100 ~~~~~~~~~~~~kvviI~~a~~~~~-------------~a~NaLLK~LE-------------EPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 100 EEFSKSGVESNKKVYIIEHADKMTA-------------SAANSLLKFLE-------------EPSGGTTAILLTENKHQI 153 (329)
T ss_pred HHHhhCCcccCceEEEeehHhhhCH-------------HHHHHHHHHhc-------------CCCCCceEEEEeCChHhC
Confidence 4332000134567999999986632 23356777666 567788888899999999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHH
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED 328 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~ 328 (473)
.|.+++ |.-.+.+ .|+.++-.++++. .+++.+.
T Consensus 154 l~TIrS--Rc~~i~~~~~~~~~~~~~L~~----~gi~~~~ 187 (329)
T PRK08058 154 LPTILS--RCQVVEFRPLPPESLIQRLQE----EGISESL 187 (329)
T ss_pred cHHHHh--hceeeeCCCCCHHHHHHHHHH----cCCChHH
Confidence 999999 8766666 5777777666653 3455543
No 170
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=6.7e-08 Score=99.63 Aligned_cols=136 Identities=14% Similarity=0.176 Sum_probs=91.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-------------------------EEecccccccC-------------
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP-------------------------IMMSAGELESG------------- 196 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-------------------------i~vs~s~l~s~------------- 196 (473)
+.|.++||+||+|+||+++|+.+|+.+.... ..+........
T Consensus 19 rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~~ 98 (342)
T PRK06964 19 RLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEADA 98 (342)
T ss_pred CcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccchh
Confidence 8899999999999999999999999864321 11111000000
Q ss_pred -CCC---------ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCC
Q 011983 197 -NAG---------EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP 266 (473)
Q Consensus 197 -~~G---------e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~ 266 (473)
--| -.-..||++.+.+......+...|++||++|.+-. ...+.|+..++
T Consensus 99 ~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------- 157 (342)
T PRK06964 99 DEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEALNV-------------AAANALLKTLE-------- 157 (342)
T ss_pred hcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhcCH-------------HHHHHHHHHhc--------
Confidence 000 11234555554432111145567999999997732 22356667666
Q ss_pred CCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhh
Q 011983 267 GMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGI 318 (473)
Q Consensus 267 g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~ 318 (473)
++.+++.+|.+|++++.|.|.+++ |+-.+.+ .|+.++..+.|...
T Consensus 158 -----EPp~~t~fiL~t~~~~~LLpTI~S--Rcq~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 158 -----EPPPGTVFLLVSARIDRLLPTILS--RCRQFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred -----CCCcCcEEEEEECChhhCcHHHHh--cCEEEEecCCCHHHHHHHHHHc
Confidence 678899999999999999999999 8865555 58888888887653
No 171
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=98.74 E-value=2.4e-07 Score=94.63 Aligned_cols=152 Identities=13% Similarity=0.130 Sum_probs=95.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------cEEecccccccC---------CCC--------
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------PIMMSAGELESG---------NAG-------- 199 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------~i~vs~s~l~s~---------~~G-------- 199 (473)
+.|..+||+||+|+||+++|.++|+.+-.. ++.+.......+ ..|
T Consensus 24 rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~ 103 (314)
T PRK07399 24 RIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQ 103 (314)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEeccccccccccchhhhhhcccccccccc
Confidence 678999999999999999999999995221 111111100000 000
Q ss_pred ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceE
Q 011983 200 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPI 279 (473)
Q Consensus 200 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~V 279 (473)
-....+|++.+.+...--.....|++||++|.+-. ...+.|+.+++ ++. +..+
T Consensus 104 I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m~~-------------~aaNaLLK~LE-------------EPp-~~~f 156 (314)
T PRK07399 104 IRLEQIREIKRFLSRPPLEAPRKVVVIEDAETMNE-------------AAANALLKTLE-------------EPG-NGTL 156 (314)
T ss_pred CcHHHHHHHHHHHccCcccCCceEEEEEchhhcCH-------------HHHHHHHHHHh-------------CCC-CCeE
Confidence 01123455444332111145678999999987632 23356777666 334 5567
Q ss_pred EEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCH--HHHHHHHhc
Q 011983 280 IVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPK--EDIVKLVDT 335 (473)
Q Consensus 280 IaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~--~~l~~l~~~ 335 (473)
|.+|++++.|.|.+++ |...+-+ .|+.++-.+++......+..+. ..+..++.+
T Consensus 157 ILi~~~~~~Ll~TI~S--Rcq~i~f~~l~~~~~~~~L~~~~~~~~~~~~~~~l~~~a~G 213 (314)
T PRK07399 157 ILIAPSPESLLPTIVS--RCQIIPFYRLSDEQLEQVLKRLGDEEILNINFPELLALAQG 213 (314)
T ss_pred EEEECChHhCcHHHHh--hceEEecCCCCHHHHHHHHHHhhccccchhHHHHHHHHcCC
Confidence 8888899999999999 8766655 5788999998887655444343 455555555
No 172
>PRK08181 transposase; Validated
Probab=98.72 E-value=2.2e-08 Score=100.02 Aligned_cols=101 Identities=18% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccCCCCC-hHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
...+++|+||||||||+||.+++++ .|..++.++..++...+... ....+.+.++ +-.++.+|+|||++.
T Consensus 105 ~~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~------~l~~~dLLIIDDlg~ 178 (269)
T PRK08181 105 KGANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIA------KLDKFDLLILDDLAY 178 (269)
T ss_pred cCceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHH------HHhcCCEEEEecccc
Confidence 3467999999999999999999976 47777888877666322100 0001111111 124578999999987
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
..... .....|.++++ .. ..+.++|+|||.+
T Consensus 179 ~~~~~-----------~~~~~Lf~lin----------~R---~~~~s~IiTSN~~ 209 (269)
T PRK08181 179 VTKDQ-----------AETSVLFELIS----------AR---YERRSILITANQP 209 (269)
T ss_pred ccCCH-----------HHHHHHHHHHH----------HH---HhCCCEEEEcCCC
Confidence 54321 12244555554 11 1124799999986
No 173
>PRK06526 transposase; Provisional
Probab=98.71 E-value=1.6e-08 Score=100.22 Aligned_cols=73 Identities=15% Similarity=0.144 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCC-hHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..+.+++|+||||||||+||.+|+.++ |..++.++..++....... ....+...+ -+-..+.+|+|||++
T Consensus 96 ~~~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l------~~l~~~dlLIIDD~g 169 (254)
T PRK06526 96 TGKENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAEL------VKLGRYPLLIVDEVG 169 (254)
T ss_pred hcCceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHH------HHhccCCEEEEcccc
Confidence 456789999999999999999999874 6666666655544221000 000011111 113457899999998
Q ss_pred Ccc
Q 011983 231 AGA 233 (473)
Q Consensus 231 al~ 233 (473)
.+.
T Consensus 170 ~~~ 172 (254)
T PRK06526 170 YIP 172 (254)
T ss_pred cCC
Confidence 764
No 174
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.70 E-value=9.2e-08 Score=94.32 Aligned_cols=99 Identities=12% Similarity=0.269 Sum_probs=64.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHH----HHHHH-cCCceEEEecC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA----ADIIK-KGKMCCLFIND 228 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A----~~~~~-~~~p~ILfIDE 228 (473)
..+++|+|+||||||+|+.+||+++ |..++.++.+++... ++..|..+ .++++ -....+|+|||
T Consensus 99 ~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~--------l~~~~~~~~~~~~~~l~~l~~~dlLvIDD 170 (244)
T PRK07952 99 IASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSA--------MKDTFSNSETSEEQLLNDLSNVDLLVIDE 170 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHH--------HHHHHhhccccHHHHHHHhccCCEEEEeC
Confidence 3589999999999999999999996 778888887776632 22222110 01111 23578999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
++..... ......|.++++ + ....+.++|+|||..
T Consensus 171 ig~~~~s-----------~~~~~~l~~Ii~----------~--Ry~~~~~tiitSNl~ 205 (244)
T PRK07952 171 IGVQTES-----------RYEKVIINQIVD----------R--RSSSKRPTGMLTNSN 205 (244)
T ss_pred CCCCCCC-----------HHHHHHHHHHHH----------H--HHhCCCCEEEeCCCC
Confidence 9875321 111234445554 1 234567899999975
No 175
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.68 E-value=1.5e-07 Score=96.23 Aligned_cols=143 Identities=15% Similarity=0.163 Sum_probs=92.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-EE---------ecc---cccc-----cCCCCC------hHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IM---------MSA---GELE-----SGNAGE------PAKLIRQRY 209 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-i~---------vs~---s~l~-----s~~~Ge------~~~~ir~~f 209 (473)
.+.|..+||+||+|+||+++|.++|+.+-..- .. +.. +++. ....|. ....||++.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 47899999999999999999999999853210 00 000 0110 000111 133455554
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.+...-..+...|++||++|.+-. .-.+.|+..++ ++.+++.+|.+|+.++.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~~~~~~~l 156 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAINR-------------AACNALLKTLE-------------EPSPGRYLWLISAQPARL 156 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhhCH-------------HHHHHHHHHhh-------------CCCCCCeEEEEECChhhC
Confidence 4432111134557999999998732 22356777666 667888999999999999
Q ss_pred ccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHH
Q 011983 290 YAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED 328 (473)
Q Consensus 290 d~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~ 328 (473)
.|.+++ |+..+-+ .|+.++-.+.+.. .+++..+
T Consensus 157 LpTIrS--RCq~i~~~~~~~~~~~~~L~~----~~~~~~~ 190 (319)
T PRK08769 157 PATIRS--RCQRLEFKLPPAHEALAWLLA----QGVSERA 190 (319)
T ss_pred chHHHh--hheEeeCCCcCHHHHHHHHHH----cCCChHH
Confidence 999999 9877766 5788777766653 2455553
No 176
>smart00350 MCM minichromosome maintenance proteins.
Probab=98.66 E-value=3.1e-08 Score=107.46 Aligned_cols=142 Identities=14% Similarity=0.221 Sum_probs=86.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe----cccccccCCCCCh--HHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEP--AKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v----s~s~l~s~~~Ge~--~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
...+||+|+||||||++|+++++.+....+.. ++..+.......+ ... .++ +- .+......+++|||+|
T Consensus 236 ~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~---~~~-~G-~l~~A~~Gil~iDEi~ 310 (509)
T smart00350 236 DINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTRDPETREF---TLE-GG-ALVLADNGVCCIDEFD 310 (509)
T ss_pred cceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceEccCcceE---Eec-Cc-cEEecCCCEEEEechh
Confidence 34799999999999999999999875432221 1111211000000 000 000 00 0113346799999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccC--CCCcccCCCCCceEEEecCCCC-------------CCcccccc
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIR 295 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l--~g~~~~~~~~~V~VIaTTN~~~-------------~Ld~aLlR 295 (473)
.+-.. ....|++.++. +.+.+ .|. ......+..||+|+|... .|++++++
T Consensus 311 ~l~~~-------------~q~~L~e~me~-~~i~i~k~G~-~~~l~~~~~viAa~NP~~g~y~~~~~~~~n~~l~~~lLs 375 (509)
T smart00350 311 KMDDS-------------DRTAIHEAMEQ-QTISIAKAGI-TTTLNARCSVLAAANPIGGRYDPKLTPEENIDLPAPILS 375 (509)
T ss_pred hCCHH-------------HHHHHHHHHhc-CEEEEEeCCE-EEEecCCcEEEEEeCCCCcccCCCcChhhccCCChHHhC
Confidence 87432 23455665552 22211 232 112346788999999653 59999999
Q ss_pred CCCceEEEe---cCCHHHHHHHHHhhcC
Q 011983 296 DGRMEKFYW---APTREDRIGVCSGIFR 320 (473)
Q Consensus 296 ~GRfd~~i~---~P~~eeR~~Il~~~l~ 320 (473)
|||..+. .|+.+.+.+|.++++.
T Consensus 376 --RFdLi~~~~d~~~~~~d~~i~~~i~~ 401 (509)
T smart00350 376 --RFDLLFVVLDEVDEERDRELAKHVVD 401 (509)
T ss_pred --ceeeEEEecCCCChHHHHHHHHHHHH
Confidence 9999888 4999999999987653
No 177
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=98.66 E-value=3.3e-08 Score=108.97 Aligned_cols=144 Identities=13% Similarity=0.117 Sum_probs=93.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecccccccCCCCChHHHHHHHHHHHH-----HHHHcCCceEEEecCCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 230 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----~~~~~~~p~ILfIDEiD 230 (473)
.+|||.|+||||||++|+++++.++. +|+.+..+......+|.- .+...+.... .++......+||||||+
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~i--dl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~ 94 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGI--DVEESLAGGQRVTQPGLLDEAPRGVLYVDMAN 94 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccch--hhhhhhhcCcccCCCCCeeeCCCCcEeccchh
Confidence 47999999999999999999998764 577777543333444432 1111111000 01112334699999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCc-ccCCCCcccCCCCCceEEEecCCCC---CCccccccCCCceEEEe--
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGRMEKFYW-- 304 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~-v~l~g~~~~~~~~~V~VIaTTN~~~---~Ld~aLlR~GRfd~~i~-- 304 (473)
.+-. .+...|++.+++.+. +.-.|.. .....+..||+|+|..+ .|+++|+. ||+..+.
T Consensus 95 rl~~-------------~~q~~Ll~al~~g~v~i~r~G~~-~~~p~~f~lIAt~np~e~~g~L~~~Lld--Rf~l~v~~~ 158 (589)
T TIGR02031 95 LLDD-------------GLSNRLLQALDEGVVIVEREGIS-VVHPAKFALIATYDPAEGGGGLPDHLLD--RLALHVSLE 158 (589)
T ss_pred hCCH-------------HHHHHHHHHHHcCCeEEEECCCc-eeecCceEEEEecCCccccCCCCHHHHH--hccCeeecC
Confidence 7643 344667776663321 2222321 12235678889988765 79999999 9999776
Q ss_pred -cCCHHHHHHHHHhhc
Q 011983 305 -APTREDRIGVCSGIF 319 (473)
Q Consensus 305 -~P~~eeR~~Il~~~l 319 (473)
+|..++|.+|++.++
T Consensus 159 ~~~~~~er~eil~~~~ 174 (589)
T TIGR02031 159 DVASQDLRVEIVRRER 174 (589)
T ss_pred CCCCHHHHHHHHHHHH
Confidence 588999999998765
No 178
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.65 E-value=2.2e-07 Score=95.24 Aligned_cols=137 Identities=9% Similarity=0.088 Sum_probs=92.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc--EEecccc--------------c--ccCCCC--ChHHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAGE--------------L--ESGNAG--EPAKLIRQRYREAA 213 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~--i~vs~s~--------------l--~s~~~G--e~~~~ir~~f~~A~ 213 (473)
.+.|.++||+||+|+||+++|+++|+.+-..- -.-.++. + .....| -....+|++-+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~ 100 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVS 100 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHh
Confidence 37889999999999999999999999853210 0001111 1 000011 12456666655543
Q ss_pred HHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcccc
Q 011983 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293 (473)
Q Consensus 214 ~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aL 293 (473)
.....+...|++||++|.+-. ...+.|+..++ ++.+++.+|.+|+.++.|.|.+
T Consensus 101 ~~~~~g~~KV~iI~~a~~m~~-------------~AaNaLLKtLE-------------EPp~~~~fiL~t~~~~~llpTI 154 (325)
T PRK06871 101 QHAQQGGNKVVYIQGAERLTE-------------AAANALLKTLE-------------EPRPNTYFLLQADLSAALLPTI 154 (325)
T ss_pred hccccCCceEEEEechhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChHhCchHH
Confidence 222255668999999997742 23366777666 6788899999999999999999
Q ss_pred ccCCCceEEEe-cCCHHHHHHHHHhh
Q 011983 294 IRDGRMEKFYW-APTREDRIGVCSGI 318 (473)
Q Consensus 294 lR~GRfd~~i~-~P~~eeR~~Il~~~ 318 (473)
++ |.-.+.+ .|+.++-.+.|...
T Consensus 155 ~S--RC~~~~~~~~~~~~~~~~L~~~ 178 (325)
T PRK06871 155 YS--RCQTWLIHPPEEQQALDWLQAQ 178 (325)
T ss_pred Hh--hceEEeCCCCCHHHHHHHHHHH
Confidence 99 8877666 57777777777654
No 179
>PRK06921 hypothetical protein; Provisional
Probab=98.63 E-value=1.4e-07 Score=94.15 Aligned_cols=68 Identities=18% Similarity=0.218 Sum_probs=47.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLD 230 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiD 230 (473)
...+++||||||+|||+|+.+||+++ |..+++++..++.. .++..|....+.++ -....+|+|||++
T Consensus 116 ~~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~--------~l~~~~~~~~~~~~~~~~~dlLiIDDl~ 187 (266)
T PRK06921 116 RKNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFG--------DLKDDFDLLEAKLNRMKKVEVLFIDDLF 187 (266)
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHH--------HHHHHHHHHHHHHHHhcCCCEEEEeccc
Confidence 35789999999999999999999984 66777777665542 23333332222222 3457899999995
Q ss_pred C
Q 011983 231 A 231 (473)
Q Consensus 231 a 231 (473)
.
T Consensus 188 ~ 188 (266)
T PRK06921 188 K 188 (266)
T ss_pred c
Confidence 4
No 180
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=98.63 E-value=6e-07 Score=94.13 Aligned_cols=176 Identities=19% Similarity=0.234 Sum_probs=108.0
Q ss_pred HHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEecccccccCCCCChHHHHHHHHHHHHH
Q 011983 140 VVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAAD 214 (473)
Q Consensus 140 ~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~ 214 (473)
....+++..-..++. .-.-++||||.|.|||+|++|++++.. ..+++++...+.. ..+..+.+...+
T Consensus 97 ~A~aa~~~va~~~g~-~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~-------~~v~a~~~~~~~ 168 (408)
T COG0593 97 LAYAAAKAVAENPGG-AYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN-------DFVKALRDNEME 168 (408)
T ss_pred HHHHHHHHHHhccCC-cCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH-------HHHHHHHhhhHH
Confidence 344445554444542 334589999999999999999999952 3455666554442 122222221222
Q ss_pred HHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-CCC---CC
Q 011983 215 IIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-DFS---TL 289 (473)
Q Consensus 215 ~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~~~---~L 289 (473)
..+ ...-.+++||||+.+.++.. + ......++..+.+ ..+ -||.|+. .|. .+
T Consensus 169 ~Fk~~y~~dlllIDDiq~l~gk~~--~-----qeefFh~FN~l~~---------------~~k-qIvltsdr~P~~l~~~ 225 (408)
T COG0593 169 KFKEKYSLDLLLIDDIQFLAGKER--T-----QEEFFHTFNALLE---------------NGK-QIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHhhccCeeeechHhHhcCChh--H-----HHHHHHHHHHHHh---------------cCC-EEEEEcCCCchhhccc
Confidence 222 23456999999999877632 1 2355555555444 122 4566653 344 35
Q ss_pred ccccccCCCceEEEe----cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCCCchhhHHHHH
Q 011983 290 YAPLIRDGRMEKFYW----APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSIDFFGALR 348 (473)
Q Consensus 290 d~aLlR~GRfd~~i~----~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~f~gal~ 348 (473)
.+.|.+ ||..-+. .|+.+.|..|++...... .++.+-+.-++..+...--+..|++.
T Consensus 226 ~~rL~S--R~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~nvReLegaL~ 288 (408)
T COG0593 226 EDRLRS--RLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDRNVRELEGALN 288 (408)
T ss_pred cHHHHH--HHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhccHHHHHHHHH
Confidence 588888 8877544 499999999999876654 45666666777776655555555553
No 181
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=98.62 E-value=6.3e-08 Score=107.65 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=90.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-----------------------------------CCCcEEecccccccCCCCChH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM-----------------------------------GINPIMMSAGELESGNAGEPA 202 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l-----------------------------------g~~~i~vs~s~l~s~~~Ge~~ 202 (473)
.+|||+|+||||||++|+++++.+ ..+|+.+..+......+|.-.
T Consensus 26 g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d 105 (633)
T TIGR02442 26 GGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLD 105 (633)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhhhhcccccccCCCCeeeCCCCCcHHHcCCccc
Confidence 469999999999999999999987 245555555443333444310
Q ss_pred HHHHHHHHHH-----HHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCC
Q 011983 203 KLIRQRYREA-----ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPR 276 (473)
Q Consensus 203 ~~ir~~f~~A-----~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~ 276 (473)
+...++.. ..++......|||||||+.+-. .+...|++.+++.+ .++-+|.. .....+
T Consensus 106 --~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l~~-------------~~q~~Ll~~le~g~~~v~r~g~~-~~~~~~ 169 (633)
T TIGR02442 106 --IERALREGEKAFQPGLLAEAHRGILYIDEVNLLDD-------------HLVDVLLDAAAMGVNRVEREGLS-VSHPAR 169 (633)
T ss_pred --HHHHhhcCCeeecCcceeecCCCeEEeChhhhCCH-------------HHHHHHHHHHhcCCEEEEECCce-eeecCC
Confidence 11111100 0111122346999999997743 23466777776433 33334431 123467
Q ss_pred ceEEEecCCC-CCCccccccCCCceEEEec---CCHHHHHHHHHhhc
Q 011983 277 VPIIVTGNDF-STLYAPLIRDGRMEKFYWA---PTREDRIGVCSGIF 319 (473)
Q Consensus 277 V~VIaTTN~~-~~Ld~aLlR~GRfd~~i~~---P~~eeR~~Il~~~l 319 (473)
+.+|+|+|.. ..|.++|+. ||+..+.+ .+.++|.+|++..+
T Consensus 170 ~~lIat~np~eg~l~~~L~d--R~~l~i~v~~~~~~~~~~~il~~~~ 214 (633)
T TIGR02442 170 FVLIGTMNPEEGDLRPQLLD--RFGLCVDVAAPRDPEERVEIIRRRL 214 (633)
T ss_pred eEEEEecCCCCCCCCHHHHh--hcceEEEccCCCchHHHHHHHHHHH
Confidence 8899999854 368899999 99987774 35688888887543
No 182
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.61 E-value=4.9e-07 Score=99.96 Aligned_cols=81 Identities=22% Similarity=0.183 Sum_probs=49.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe-cccc-------------cccC--CCCChHHHHHHHHHHHHHHH--
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM-SAGE-------------LESG--NAGEPAKLIRQRYREAADII-- 216 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v-s~s~-------------l~s~--~~Ge~~~~ir~~f~~A~~~~-- 216 (473)
.+...++|+||||||||++++.+|++++..++.. +... +... .+-.....++.++..|....
T Consensus 108 ~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~ 187 (637)
T TIGR00602 108 APKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQM 187 (637)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcc
Confidence 3445799999999999999999999988765442 1110 0000 01122334444555443211
Q ss_pred ----HcCCceEEEecCCCCcccc
Q 011983 217 ----KKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 217 ----~~~~p~ILfIDEiDal~~~ 235 (473)
......||||||++.++.+
T Consensus 188 ~g~~~~~~~~IILIDEiPn~~~r 210 (637)
T TIGR00602 188 LGDDLMTDKKIILVEDLPNQFYR 210 (637)
T ss_pred cccccCCceeEEEeecchhhchh
Confidence 0245679999999987654
No 183
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.61 E-value=3.3e-08 Score=92.92 Aligned_cols=67 Identities=19% Similarity=0.290 Sum_probs=44.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccCC-----CCChHHHHHHHHHHHHHHHHcCCceEEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGN-----AGEPAKLIRQRYREAADIIKKGKMCCLFI 226 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~~-----~Ge~~~~ir~~f~~A~~~~~~~~p~ILfI 226 (473)
+...+++|+||||||||+||.+++++ .|..++.++.++|.... -+...+. ++. -....+|+|
T Consensus 45 ~~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~----~~~------l~~~dlLil 114 (178)
T PF01695_consen 45 ENGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEEL----LKR------LKRVDLLIL 114 (178)
T ss_dssp SC--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHH----HHH------HHTSSCEEE
T ss_pred ccCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhh----cCc------cccccEecc
Confidence 45679999999999999999999987 47888888887775422 1111122 221 224679999
Q ss_pred cCCCC
Q 011983 227 NDLDA 231 (473)
Q Consensus 227 DEiDa 231 (473)
||+..
T Consensus 115 DDlG~ 119 (178)
T PF01695_consen 115 DDLGY 119 (178)
T ss_dssp ETCTS
T ss_pred cccce
Confidence 99964
No 184
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.60 E-value=3.1e-07 Score=93.50 Aligned_cols=69 Identities=17% Similarity=0.300 Sum_probs=48.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHH--HHHHH-cCCceEEEecCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA--ADIIK-KGKMCCLFINDL 229 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A--~~~~~-~~~p~ILfIDEi 229 (473)
..+|++||||||||||+|+.++|+++ |.++..+..+++.. .++..|..- .+.++ -....||+|||+
T Consensus 155 ~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~--------~lk~~~~~~~~~~~l~~l~~~dlLiIDDi 226 (306)
T PRK08939 155 KVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIR--------ELKNSISDGSVKEKIDAVKEAPVLMLDDI 226 (306)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHH--------HHHHHHhcCcHHHHHHHhcCCCEEEEecC
Confidence 46899999999999999999999996 77777777776652 222222110 11111 346789999999
Q ss_pred CCc
Q 011983 230 DAG 232 (473)
Q Consensus 230 Dal 232 (473)
.+.
T Consensus 227 G~e 229 (306)
T PRK08939 227 GAE 229 (306)
T ss_pred CCc
Confidence 754
No 185
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.60 E-value=2.8e-07 Score=85.22 Aligned_cols=119 Identities=16% Similarity=0.153 Sum_probs=76.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~-----------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
.+.|..+||+||+|+||+++|.++|+.+-- .++.+....-. . .-....+|.+..
T Consensus 16 ~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~-~--~i~i~~ir~i~~ 92 (162)
T PF13177_consen 16 GRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKPDKKK-K--SIKIDQIREIIE 92 (162)
T ss_dssp TC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEETTTSS-S--SBSHHHHHHHHH
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEeccccc-c--hhhHHHHHHHHH
Confidence 378999999999999999999999999421 12222222110 0 012355565555
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+..........|++|||+|.+-. ...+.|+..++ ++..++.+|++|+.++.|.
T Consensus 93 ~~~~~~~~~~~KviiI~~ad~l~~-------------~a~NaLLK~LE-------------epp~~~~fiL~t~~~~~il 146 (162)
T PF13177_consen 93 FLSLSPSEGKYKVIIIDEADKLTE-------------EAQNALLKTLE-------------EPPENTYFILITNNPSKIL 146 (162)
T ss_dssp HCTSS-TTSSSEEEEEETGGGS-H-------------HHHHHHHHHHH-------------STTTTEEEEEEES-GGGS-
T ss_pred HHHHHHhcCCceEEEeehHhhhhH-------------HHHHHHHHHhc-------------CCCCCEEEEEEECChHHCh
Confidence 442111145678999999997643 23466777676 6678999999999999999
Q ss_pred cccccCCCceEEE
Q 011983 291 APLIRDGRMEKFY 303 (473)
Q Consensus 291 ~aLlR~GRfd~~i 303 (473)
|.+++ |.-.+-
T Consensus 147 ~TI~S--Rc~~i~ 157 (162)
T PF13177_consen 147 PTIRS--RCQVIR 157 (162)
T ss_dssp HHHHT--TSEEEE
T ss_pred HHHHh--hceEEe
Confidence 99999 875543
No 186
>PRK13531 regulatory ATPase RavA; Provisional
Probab=98.58 E-value=1.9e-07 Score=99.76 Aligned_cols=135 Identities=14% Similarity=0.169 Sum_probs=74.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEeccc-ccccCCCCCh-HHHH--HHHHHHHHHHHHcC---CceEEEecC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESGNAGEP-AKLI--RQRYREAADIIKKG---KMCCLFIND 228 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s-~l~s~~~Ge~-~~~i--r~~f~~A~~~~~~~---~p~ILfIDE 228 (473)
..+||+||||||||++|+++++.++. +|...... ......+|.. -... ...|.... .+ ...+||+||
T Consensus 40 ~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~~~~~~g~f~r~~----~G~L~~A~lLfLDE 115 (498)
T PRK13531 40 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKDEGRYQRLT----SGYLPEAEIVFLDE 115 (498)
T ss_pred CCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHhhhhhcCchhhhc----CCccccccEEeecc
Confidence 36999999999999999999998653 33322221 0111222321 0111 11222111 11 234999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc------ccccCCCceEE
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA------PLIRDGRMEKF 302 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~------aLlR~GRfd~~ 302 (473)
|..+.+ .+...|++.+++ ..+..+|. ....+..++++|||. |++ ++.. ||-..
T Consensus 116 I~rasp-------------~~QsaLLeam~E-r~~t~g~~--~~~lp~rfiv~ATN~---LPE~g~~leAL~D--RFlir 174 (498)
T PRK13531 116 IWKAGP-------------AILNTLLTAINE-RRFRNGAH--EEKIPMRLLVTASNE---LPEADSSLEALYD--RMLIR 174 (498)
T ss_pred cccCCH-------------HHHHHHHHHHHh-CeEecCCe--EEeCCCcEEEEECCC---CcccCCchHHhHh--hEEEE
Confidence 974322 345677777753 33444433 122333445556674 554 7888 88666
Q ss_pred Eec--CC-HHHHHHHHHh
Q 011983 303 YWA--PT-REDRIGVCSG 317 (473)
Q Consensus 303 i~~--P~-~eeR~~Il~~ 317 (473)
+.+ |+ .++-.+|+..
T Consensus 175 i~vp~l~~~~~e~~lL~~ 192 (498)
T PRK13531 175 LWLDKVQDKANFRSMLTS 192 (498)
T ss_pred EECCCCCchHHHHHHHHc
Confidence 664 44 4555777764
No 187
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.58 E-value=1.4e-07 Score=97.09 Aligned_cols=144 Identities=14% Similarity=0.091 Sum_probs=94.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC-c-EEecccc--------------c--ccCCCC---ChHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN-P-IMMSAGE--------------L--ESGNAG---EPAKLIRQRYREA 212 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~-~-i~vs~s~--------------l--~s~~~G---e~~~~ir~~f~~A 212 (473)
.+.|..+||+||+|+||+++|.++|+.+-.. . -...++. + .....+ -+...||++-+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 4789999999999999999999999995221 0 0001111 1 000000 1234566655544
Q ss_pred HHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccc
Q 011983 213 ADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP 292 (473)
Q Consensus 213 ~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~a 292 (473)
...-..+...|++||++|++-. ...+.|+..++ ++.+++.+|.+|++++.|.|.
T Consensus 101 ~~~~~~g~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lLpT 154 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAALLTD-------------AAANALLKTLE-------------EPPENTWFFLACREPARLLAT 154 (334)
T ss_pred hhccccCCceEEEEcchHhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhChHH
Confidence 3222256678999999997732 23356777676 678889999999999999999
Q ss_pred cccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHH
Q 011983 293 LIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKED 328 (473)
Q Consensus 293 LlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~ 328 (473)
+++ |.-...+ .|+.++..+.+... .+++.+.
T Consensus 155 IrS--RCq~~~~~~~~~~~~~~~L~~~---~~~~~~~ 186 (334)
T PRK07993 155 LRS--RCRLHYLAPPPEQYALTWLSRE---VTMSQDA 186 (334)
T ss_pred HHh--ccccccCCCCCHHHHHHHHHHc---cCCCHHH
Confidence 999 8876555 47777777666432 2355544
No 188
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.57 E-value=1.2e-07 Score=88.25 Aligned_cols=122 Identities=17% Similarity=0.245 Sum_probs=73.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHH-----------HHHHHcCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREA-----------ADIIKKGK 220 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-----------~~~~~~~~ 220 (473)
..|.-|||+|++||||+++|++|-+.. +.+|+.++|+.+.. +..-.++|... ..++....
T Consensus 20 ~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~------~~~e~~LFG~~~~~~~~~~~~~~G~l~~A~ 93 (168)
T PF00158_consen 20 SSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPE------ELLESELFGHEKGAFTGARSDKKGLLEQAN 93 (168)
T ss_dssp TSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-H------HHHHHHHHEBCSSSSTTTSSEBEHHHHHTT
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhc------chhhhhhhccccccccccccccCCceeecc
Confidence 445779999999999999999999875 46899999986631 12222344221 12333555
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
...||||||+.+... ++..|++++++.+...+++. .....++.||+|||.. |. .+...|+|.
T Consensus 94 ~GtL~Ld~I~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~st~~~--l~-~~v~~g~fr 155 (168)
T PF00158_consen 94 GGTLFLDEIEDLPPE-------------LQAKLLRVLEEGKFTRLGSD--KPVPVDVRIIASTSKD--LE-ELVEQGRFR 155 (168)
T ss_dssp TSEEEEETGGGS-HH-------------HHHHHHHHHHHSEEECCTSS--SEEE--EEEEEEESS---HH-HHHHTTSS-
T ss_pred ceEEeecchhhhHHH-------------HHHHHHHHHhhchhcccccc--ccccccceEEeecCcC--HH-HHHHcCCCh
Confidence 789999999987542 34556666663333333322 2234689999999863 22 244556663
No 189
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.56 E-value=2.9e-07 Score=94.45 Aligned_cols=134 Identities=15% Similarity=0.200 Sum_probs=87.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------------------CcEEecccccccCCCC-----ChHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------------------NPIMMSAGELESGNAG-----EPAKL 204 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~-------------------------~~i~vs~s~l~s~~~G-----e~~~~ 204 (473)
+.|..+||+||+|+|||++|+.+|+.+.. .|+.++...-. ...| -....
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~-~~~g~~~~~I~id~ 97 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDE-PENGRKLLQIKIDA 97 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEeccccc-ccccccCCCcCHHH
Confidence 78999999999999999999999999531 12223221000 0011 12456
Q ss_pred HHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC
Q 011983 205 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN 284 (473)
Q Consensus 205 ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN 284 (473)
||++.+.+...-......|++||++|.+-.. ..+.|+.+++ +...++.+|++|+
T Consensus 98 iR~l~~~~~~~p~~~~~kV~iiEp~~~Ld~~-------------a~naLLk~LE-------------ep~~~~~~Ilvth 151 (325)
T PRK08699 98 VREIIDNVYLTSVRGGLRVILIHPAESMNLQ-------------AANSLLKVLE-------------EPPPQVVFLLVSH 151 (325)
T ss_pred HHHHHHHHhhCcccCCceEEEEechhhCCHH-------------HHHHHHHHHH-------------hCcCCCEEEEEeC
Confidence 6776665542222455679999999976322 2245556555 3334577888999
Q ss_pred CCCCCccccccCCCceEEEe-cCCHHHHHHHHHh
Q 011983 285 DFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSG 317 (473)
Q Consensus 285 ~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~ 317 (473)
+++.+.+.+.+ |.-.+.+ .|+.++..+.|..
T Consensus 152 ~~~~ll~ti~S--Rc~~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 152 AADKVLPTIKS--RCRKMVLPAPSHEEALAYLRE 183 (325)
T ss_pred ChHhChHHHHH--HhhhhcCCCCCHHHHHHHHHh
Confidence 99999999988 7765555 4677777666643
No 190
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.54 E-value=3.8e-07 Score=90.48 Aligned_cols=69 Identities=20% Similarity=0.322 Sum_probs=52.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHH---HHHHHH-cCCceEEEecC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYRE---AADIIK-KGKMCCLFIND 228 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~---A~~~~~-~~~p~ILfIDE 228 (473)
.+.+++||||||+|||+||-||++++ |.+++.+..++++ ..|+..|.. ...+.+ -....+|+|||
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~--------~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDD 175 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLL--------SKLKAAFDEGRLEEKLLRELKKVDLLIIDD 175 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHH--------HHHHHHHhcCchHHHHHHHhhcCCEEEEec
Confidence 67899999999999999999999994 7888888888877 344554542 112233 34578999999
Q ss_pred CCCc
Q 011983 229 LDAG 232 (473)
Q Consensus 229 iDal 232 (473)
+-..
T Consensus 176 lG~~ 179 (254)
T COG1484 176 IGYE 179 (254)
T ss_pred ccCc
Confidence 9754
No 191
>PRK09183 transposase/IS protein; Provisional
Probab=98.53 E-value=9.9e-08 Score=94.86 Aligned_cols=74 Identities=14% Similarity=0.081 Sum_probs=47.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccCCCCC-hHHHHHHHHHHHHHHHHcCCceEEEecCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
+....+++|+||||||||+|+.+++.+ .|..+..++..++...+... ....+...+... ...+.+++|||+
T Consensus 99 i~~~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~-----~~~~dlLiiDdl 173 (259)
T PRK09183 99 IERNENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG-----VMAPRLLIIDEI 173 (259)
T ss_pred hhcCCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH-----hcCCCEEEEccc
Confidence 344568999999999999999999876 46666666666554221100 001122233322 346789999999
Q ss_pred CCc
Q 011983 230 DAG 232 (473)
Q Consensus 230 Dal 232 (473)
+..
T Consensus 174 g~~ 176 (259)
T PRK09183 174 GYL 176 (259)
T ss_pred ccC
Confidence 765
No 192
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=98.52 E-value=5e-06 Score=81.97 Aligned_cols=155 Identities=14% Similarity=0.152 Sum_probs=81.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC-CcEE--ecccc---------ccc----CCCCCh-HHHHHHHHHHHHHHHHcC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGI-NPIM--MSAGE---------LES----GNAGEP-AKLIRQRYREAADIIKKG 219 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~-~~i~--vs~s~---------l~s----~~~Ge~-~~~ir~~f~~A~~~~~~~ 219 (473)
+..++|+||+|+|||++++.+++++.. .+.. +.... +.. ...+.. ...++.+..........+
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~ 122 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAG 122 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCC
Confidence 456889999999999999999998752 2211 11110 110 111111 122333333333333467
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC--CCCC----cccc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND--FSTL----YAPL 293 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~--~~~L----d~aL 293 (473)
.+.+|+|||++.+... ....|..+.+ +.......+.|++++.. .+.+ ...+
T Consensus 123 ~~~vliiDe~~~l~~~-------------~~~~l~~l~~----------~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l 179 (269)
T TIGR03015 123 KRALLVVDEAQNLTPE-------------LLEELRMLSN----------FQTDNAKLLQIFLVGQPEFRETLQSPQLQQL 179 (269)
T ss_pred CCeEEEEECcccCCHH-------------HHHHHHHHhC----------cccCCCCeEEEEEcCCHHHHHHHcCchhHHH
Confidence 8899999999976321 1122222222 11112234445555432 1111 1234
Q ss_pred ccCCCceEEEec--CCHHHHHHHHHhhcCC------CCCCHHHHHHHHhcC
Q 011983 294 IRDGRMEKFYWA--PTREDRIGVCSGIFRT------DNVPKEDIVKLVDTF 336 (473)
Q Consensus 294 lR~GRfd~~i~~--P~~eeR~~Il~~~l~~------~~v~~~~l~~l~~~~ 336 (473)
.+ |+...+.+ .+.++-.+++...+.. ..++.+.+..+.+..
T Consensus 180 ~~--r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s 228 (269)
T TIGR03015 180 RQ--RIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFS 228 (269)
T ss_pred Hh--heeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHc
Confidence 55 66666664 5788888888766642 246666666555543
No 193
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=98.52 E-value=3.2e-07 Score=94.84 Aligned_cols=85 Identities=15% Similarity=0.182 Sum_probs=55.9
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCceEEEecCCCC-CCccccccC
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRD 296 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V~VIaTTN~~~-~Ld~aLlR~ 296 (473)
....+|||||++.+-.. ++..|++.+++.+ .++-+|.. .....++++|+|.|..+ .++++|+.
T Consensus 143 A~~GiL~lDEInrL~~~-------------~Q~~LLeam~e~~~~ier~G~s-~~~p~rfiviaT~np~eg~l~~~Lld- 207 (350)
T CHL00081 143 ANRGILYVDEVNLLDDH-------------LVDILLDSAASGWNTVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 207 (350)
T ss_pred cCCCEEEecChHhCCHH-------------HHHHHHHHHHhCCeEEeeCCee-eecCCCEEEEeccCcccCCCCHHHHH-
Confidence 34579999999976432 3355666665322 12223431 12345677777778655 69999999
Q ss_pred CCceEEEe--cCC-HHHHHHHHHhhc
Q 011983 297 GRMEKFYW--APT-REDRIGVCSGIF 319 (473)
Q Consensus 297 GRfd~~i~--~P~-~eeR~~Il~~~l 319 (473)
||...+. .|. .+.|.+|++...
T Consensus 208 -Rf~l~i~l~~~~~~~~e~~il~~~~ 232 (350)
T CHL00081 208 -RFGMHAEIRTVKDPELRVKIVEQRT 232 (350)
T ss_pred -HhCceeecCCCCChHHHHHHHHhhh
Confidence 9998877 365 699999998754
No 194
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.52 E-value=1.1e-06 Score=89.90 Aligned_cols=133 Identities=17% Similarity=0.209 Sum_probs=90.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-----------------------CcEEecccccccCCCCChHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGI-----------------------NPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~-----------------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
.+.|..+||+||.|+||+.+|+.+|+.+-. .|+.+.... .++. -+...||++-+
T Consensus 22 ~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~-~~~~--I~vdqiR~l~~ 98 (319)
T PRK06090 22 GRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEK-EGKS--ITVEQIRQCNR 98 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCc-CCCc--CCHHHHHHHHH
Confidence 478999999999999999999999998521 111121110 0000 12345565544
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+......+...|++||++|.+-. ...+.|+..++ ++.+++.+|.+|++++.|-
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m~~-------------~AaNaLLKtLE-------------EPp~~t~fiL~t~~~~~lL 152 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAMNE-------------SASNALLKTLE-------------EPAPNCLFLLVTHNQKRLL 152 (319)
T ss_pred HHhhCcccCCceEEEecchhhhCH-------------HHHHHHHHHhc-------------CCCCCeEEEEEECChhhCh
Confidence 443222245568999999997732 23356777666 6678899999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHh
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSG 317 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~ 317 (473)
|.+++ |.-.+.+ .|+.++..+.+..
T Consensus 153 pTI~S--RCq~~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 153 PTIVS--RCQQWVVTPPSTAQAMQWLKG 178 (319)
T ss_pred HHHHh--cceeEeCCCCCHHHHHHHHHH
Confidence 99999 9876665 5888887777654
No 195
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=98.50 E-value=1.8e-07 Score=96.44 Aligned_cols=85 Identities=16% Similarity=0.178 Sum_probs=57.0
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCceEEEecCCCC-CCccccccC
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS-TLYAPLIRD 296 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V~VIaTTN~~~-~Ld~aLlR~ 296 (473)
....+|||||++.+-. .+++.|++.+++.. .++-+|.. .....++++|+|+|..+ .|+++|+.
T Consensus 130 A~~GvL~lDEi~~L~~-------------~~Q~~Ll~~l~~g~~~v~r~G~~-~~~~~r~iviat~np~eg~l~~~Lld- 194 (337)
T TIGR02030 130 ANRGILYIDEVNLLED-------------HLVDVLLDVAASGWNVVEREGIS-IRHPARFVLVGSGNPEEGELRPQLLD- 194 (337)
T ss_pred ccCCEEEecChHhCCH-------------HHHHHHHHHHHhCCeEEEECCEE-EEcCCCEEEEeccccccCCCCHHHHh-
Confidence 4467999999997632 34466667666432 23334442 12345677888888655 69999999
Q ss_pred CCceEEEec--CC-HHHHHHHHHhhc
Q 011983 297 GRMEKFYWA--PT-REDRIGVCSGIF 319 (473)
Q Consensus 297 GRfd~~i~~--P~-~eeR~~Il~~~l 319 (473)
||...+.+ |. .++|.+|++...
T Consensus 195 -Rf~l~i~l~~p~~~eer~eIL~~~~ 219 (337)
T TIGR02030 195 -RFGLHAEIRTVRDVELRVEIVERRT 219 (337)
T ss_pred -hcceEEECCCCCCHHHHHHHHHhhh
Confidence 99988773 54 589999998743
No 196
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.41 E-value=4.1e-06 Score=84.53 Aligned_cols=203 Identities=15% Similarity=0.145 Sum_probs=117.6
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEecccccccC------------CCCChH
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG------------NAGEPA 202 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s~------------~~Ge~~ 202 (473)
....++..|....+.++||+|++|.|||++++.+++... .+++.+....--+. ....+.
T Consensus 48 ~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP~~~~ 127 (302)
T PF05621_consen 48 RLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAPYRPR 127 (302)
T ss_pred HHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcccCCC
Confidence 344555566666677899999999999999999998743 24444444211000 000111
Q ss_pred HHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEe
Q 011983 203 KLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT 282 (473)
Q Consensus 203 ~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaT 282 (473)
..+.+....+..+++...+.+|+|||++.+..... ...+.+.+.|..|.+ .-+++||+.
T Consensus 128 ~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~------~~qr~~Ln~LK~L~N---------------eL~ipiV~v 186 (302)
T PF05621_consen 128 DRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSY------RKQREFLNALKFLGN---------------ELQIPIVGV 186 (302)
T ss_pred CCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccH------HHHHHHHHHHHHHhh---------------ccCCCeEEe
Confidence 22334455556677799999999999998753211 123455555555443 355667765
Q ss_pred cC----CCCCCccccccCCCceEEEe---cCCHHHHHHHHHhhcC------CCCCCHHHHHHHHhcCCCCchhhHHHHHH
Q 011983 283 GN----DFSTLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFR------TDNVPKEDIVKLVDTFPGQSIDFFGALRA 349 (473)
Q Consensus 283 TN----~~~~Ld~aLlR~GRfd~~i~---~P~~eeR~~Il~~~l~------~~~v~~~~l~~l~~~~sga~l~f~gal~~ 349 (473)
+. +.=.-|+.|-+ ||+.+.. -++.+- ..++..+-. ..++...+++...-..++..++-...+..
T Consensus 187 Gt~~A~~al~~D~QLa~--RF~~~~Lp~W~~d~ef-~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~iG~l~~ll~ 263 (302)
T PF05621_consen 187 GTREAYRALRTDPQLAS--RFEPFELPRWELDEEF-RRLLASFERALPLRKPSNLASPELARRIHERSEGLIGELSRLLN 263 (302)
T ss_pred ccHHHHHHhccCHHHHh--ccCCccCCCCCCCcHH-HHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCchHHHHHHHH
Confidence 42 12234677888 9887765 245444 344443322 24566667776666666666764434444
Q ss_pred HhhHHHHHHHHHHhcchhhhhhhccC
Q 011983 350 RVYDDEVRKWISEVGIERIGKRLVNS 375 (473)
Q Consensus 350 ~~~~~av~~~i~~~g~~~i~~~lv~~ 375 (473)
.+...| |.. |.|.|....++.
T Consensus 264 ~aA~~A----I~s-G~E~It~~~l~~ 284 (302)
T PF05621_consen 264 AAAIAA----IRS-GEERITREILDK 284 (302)
T ss_pred HHHHHH----Hhc-CCceecHHHHhh
Confidence 444443 333 666666655544
No 197
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=98.41 E-value=6.9e-07 Score=91.86 Aligned_cols=134 Identities=16% Similarity=0.197 Sum_probs=80.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccccCCCCChHHHHHHHHHHH-------H----HHHHcCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA-------A----DIIKKGKM 221 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A-------~----~~~~~~~p 221 (473)
....|||+|++||||+++|++|-.... .+|+.++|+.+.... .-..+|... . .++.....
T Consensus 21 ~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~------l~~~lfG~~~g~~~ga~~~~~G~~~~a~g 94 (329)
T TIGR02974 21 LDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENL------LDSELFGHEAGAFTGAQKRHQGRFERADG 94 (329)
T ss_pred CCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHH------HHHHHhccccccccCcccccCCchhhCCC
Confidence 345699999999999999999987653 699999998653211 111222211 0 01223457
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCccccc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 294 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~aLl 294 (473)
..|||||||.+-. .++..|+.++++.+...+.+. .....++.||+|||.. ..+.+.|.
T Consensus 95 GtL~Ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~at~~~l~~~~~~g~fr~dL~ 159 (329)
T TIGR02974 95 GTLFLDELATASL-------------LVQEKLLRVIEYGEFERVGGS--QTLQVDVRLVCATNADLPALAAEGRFRADLL 159 (329)
T ss_pred CEEEeCChHhCCH-------------HHHHHHHHHHHcCcEEecCCC--ceeccceEEEEechhhHHHHhhcCchHHHHH
Confidence 8999999998743 233556666653322222222 1234678899998753 23344555
Q ss_pred cCCCceE-EEecCCHHHHH
Q 011983 295 RDGRMEK-FYWAPTREDRI 312 (473)
Q Consensus 295 R~GRfd~-~i~~P~~eeR~ 312 (473)
. |+.. .|.+|...+|.
T Consensus 160 ~--rl~~~~i~lPpLReR~ 176 (329)
T TIGR02974 160 D--RLAFDVITLPPLRERQ 176 (329)
T ss_pred H--HhcchhcCCCchhhhh
Confidence 5 5543 44478766664
No 198
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=98.40 E-value=4.5e-06 Score=81.32 Aligned_cols=150 Identities=13% Similarity=0.213 Sum_probs=93.0
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-c
Q 011983 143 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-K 218 (473)
Q Consensus 143 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~ 218 (473)
.+++|-.......+...+||||..|||||+|+||+-++. |..++.|+-.+|.. +-.+++ .++ .
T Consensus 71 ~L~~NT~~F~~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~~---------Lp~l~~----~Lr~~ 137 (287)
T COG2607 71 ALVRNTEQFAEGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLAT---------LPDLVE----LLRAR 137 (287)
T ss_pred HHHHHHHHHHcCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHhh---------HHHHHH----HHhcC
Confidence 344443332334677899999999999999999999984 66788888776652 223333 222 5
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccC--
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD-- 296 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~-- 296 (473)
...-|||+|++- ++... .-...|...++ |- ......+|+|-+|+|+...|+.-....
T Consensus 138 ~~kFIlFcDDLS-----Fe~gd-------~~yK~LKs~Le--------G~-ve~rP~NVl~YATSNRRHLl~e~~~dn~~ 196 (287)
T COG2607 138 PEKFILFCDDLS-----FEEGD-------DAYKALKSALE--------GG-VEGRPANVLFYATSNRRHLLPEDMKDNEG 196 (287)
T ss_pred CceEEEEecCCC-----CCCCc-------hHHHHHHHHhc--------CC-cccCCCeEEEEEecCCcccccHhhhhCCC
Confidence 567899999874 21110 11233444343 32 234567899999999988776544321
Q ss_pred ------------------CCceEEEe--cCCHHHHHHHHHhhcCCCCCCH
Q 011983 297 ------------------GRMEKFYW--APTREDRIGVCSGIFRTDNVPK 326 (473)
Q Consensus 297 ------------------GRfd~~i~--~P~~eeR~~Il~~~l~~~~v~~ 326 (473)
-||...+- .++.++=..|+.++....+++.
T Consensus 197 ~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~ 246 (287)
T COG2607 197 STGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDI 246 (287)
T ss_pred cccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCC
Confidence 14444443 3567777777777766554443
No 199
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.40 E-value=1.3e-06 Score=76.26 Aligned_cols=75 Identities=16% Similarity=0.140 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--------CCCcEEeccccccc--------------CCCC-ChHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM--------GINPIMMSAGELES--------------GNAG-EPAKLIRQRYREA 212 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l--------g~~~i~vs~s~l~s--------------~~~G-e~~~~ir~~f~~A 212 (473)
....++++||||+|||++++.+++.+ ..+++.+.++...+ .... .+... +++..
T Consensus 3 ~~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---l~~~~ 79 (131)
T PF13401_consen 3 SQRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDE---LRSLL 79 (131)
T ss_dssp ----EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHH---HHHHH
T ss_pred CCcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHH---HHHHH
Confidence 34678999999999999999999997 67777776643321 0111 11222 22222
Q ss_pred HHHHHcCCceEEEecCCCCcc
Q 011983 213 ADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 213 ~~~~~~~~p~ILfIDEiDal~ 233 (473)
.+.++.....+|+|||+|.+.
T Consensus 80 ~~~l~~~~~~~lviDe~~~l~ 100 (131)
T PF13401_consen 80 IDALDRRRVVLLVIDEADHLF 100 (131)
T ss_dssp HHHHHHCTEEEEEEETTHHHH
T ss_pred HHHHHhcCCeEEEEeChHhcC
Confidence 333345556799999999864
No 200
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.37 E-value=3.1e-06 Score=95.92 Aligned_cols=112 Identities=18% Similarity=0.153 Sum_probs=80.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccc------cc---cCCCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE------LE---SGNAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~------l~---s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
+++.-+||.||.|+|||-+|+++|..+ .-.+|.++.++ +. .+|+|.++-- ++.+.. ++...+
T Consensus 589 ~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg--~Lteav----rrrP~s 662 (898)
T KOG1051|consen 589 NPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGG--QLTEAV----KRRPYS 662 (898)
T ss_pred CCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHH--HHHHHH----hcCCce
Confidence 577899999999999999999999995 34788888874 22 2467765542 233322 277789
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~ 287 (473)
||+|||||+... .+...|++++|...-..-.|. .....+++||+|+|...
T Consensus 663 VVLfdeIEkAh~-------------~v~n~llq~lD~GrltDs~Gr--~Vd~kN~I~IMTsn~~~ 712 (898)
T KOG1051|consen 663 VVLFEEIEKAHP-------------DVLNILLQLLDRGRLTDSHGR--EVDFKNAIFIMTSNVGS 712 (898)
T ss_pred EEEEechhhcCH-------------HHHHHHHHHHhcCccccCCCc--EeeccceEEEEecccch
Confidence 999999997643 355667777775544444433 45678999999998754
No 201
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.32 E-value=5.5e-06 Score=73.52 Aligned_cols=88 Identities=19% Similarity=0.204 Sum_probs=56.7
Q ss_pred HHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHH
Q 011983 138 DKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREA 212 (473)
Q Consensus 138 d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A 212 (473)
-+.++..++.++..++.+.|+.+-|+||||||||++++.||+.+ +.+++..-.+..--.....-..+-.++-++.
T Consensus 34 ~~~v~~ai~~~l~~~~p~KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 34 VEVVVNAIKGHLANPNPRKPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred HHHHHHHHHHHHcCCCCCCCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 35567778888888888999999999999999999999999993 4556554443332222222233333444444
Q ss_pred HHHHHcCCceEEE
Q 011983 213 ADIIKKGKMCCLF 225 (473)
Q Consensus 213 ~~~~~~~~p~ILf 225 (473)
.+.+.....++++
T Consensus 114 ~~~v~~C~rslFI 126 (127)
T PF06309_consen 114 RGNVSRCPRSLFI 126 (127)
T ss_pred HHHHHhCCcCeee
Confidence 4444455445444
No 202
>PF13173 AAA_14: AAA domain
Probab=98.31 E-value=2.5e-06 Score=75.42 Aligned_cols=69 Identities=16% Similarity=0.218 Sum_probs=45.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.++|+||.|||||++++.+++.+. -+++.++..+.......... +.+.|.+.. ...+.+|||||+..+
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~--~~~~~~~~~----~~~~~~i~iDEiq~~ 73 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD--LLEYFLELI----KPGKKYIFIDEIQYL 73 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh--hHHHHHHhh----ccCCcEEEEehhhhh
Confidence 5789999999999999999999876 67777776654321000000 111222111 236789999999876
No 203
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.31 E-value=1.9e-06 Score=86.29 Aligned_cols=108 Identities=18% Similarity=0.257 Sum_probs=71.1
Q ss_pred hhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCC
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGN 197 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~ 197 (473)
+++...+.++ +.+.+++.+|.++..++.+.|..+=|+|++||||.+.++.||+.+ ..+++..--+.+--..
T Consensus 80 L~~~lfGQHl----a~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~ 155 (344)
T KOG2170|consen 80 LARALFGQHL----AKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPH 155 (344)
T ss_pred HHHHhhchHH----HHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCC
Confidence 4444444333 346678889999999999999999999999999999999999984 2233322222221111
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 198 AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 198 ~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
...-+.+-.++-++.++.++..+.+|++|||+|++-+
T Consensus 156 ~~~ie~Yk~eL~~~v~~~v~~C~rslFIFDE~DKmp~ 192 (344)
T KOG2170|consen 156 ASKIEDYKEELKNRVRGTVQACQRSLFIFDEVDKLPP 192 (344)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCceEEechhhhcCH
Confidence 1111222223344444455588899999999998853
No 204
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=98.31 E-value=2.1e-06 Score=88.17 Aligned_cols=133 Identities=17% Similarity=0.226 Sum_probs=80.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHH-HHHHHHH-----------HHHHHcCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLI-RQRYREA-----------ADIIKKGK 220 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~i-r~~f~~A-----------~~~~~~~~ 220 (473)
.+..|||+|++||||+++|++|-... +.+|+.++|..+.. ..+ ..+|... ...+....
T Consensus 28 ~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~-------~~~~~~lfg~~~~~~~g~~~~~~g~l~~a~ 100 (326)
T PRK11608 28 LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-------NLLDSELFGHEAGAFTGAQKRHPGRFERAD 100 (326)
T ss_pred CCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCH-------HHHHHHHccccccccCCcccccCCchhccC
Confidence 34569999999999999999998775 36899999987531 111 1122111 01112444
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCcccc
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPL 293 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~aL 293 (473)
...|||||+|.+... ++..|++++++......++. .....++.||+||+.. ..+.+.|
T Consensus 101 gGtL~l~~i~~L~~~-------------~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~s~~~l~~l~~~g~f~~dL 165 (326)
T PRK11608 101 GGTLFLDELATAPML-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVAEGKFRADL 165 (326)
T ss_pred CCeEEeCChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCchhHHHHHHcCCchHHH
Confidence 678999999987532 33556665553221111211 1123468899988763 3455556
Q ss_pred ccCCCce-EEEecCCHHHHH
Q 011983 294 IRDGRME-KFYWAPTREDRI 312 (473)
Q Consensus 294 lR~GRfd-~~i~~P~~eeR~ 312 (473)
.. ||. ..|.+|...+|.
T Consensus 166 ~~--~l~~~~i~lPpLReR~ 183 (326)
T PRK11608 166 LD--RLAFDVVQLPPLRERQ 183 (326)
T ss_pred HH--hcCCCEEECCChhhhh
Confidence 66 663 456688777774
No 205
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=98.29 E-value=1e-06 Score=95.30 Aligned_cols=129 Identities=13% Similarity=0.101 Sum_probs=72.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC----------------------------CCcEEecccccccCCCCChHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG----------------------------INPIMMSAGELESGNAGEPAKLIRQ 207 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg----------------------------~~~i~vs~s~l~s~~~Ge~~~~ir~ 207 (473)
....++|+||||||||++++.++..+. .+|.....+......+|.....-..
T Consensus 210 ~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG 289 (499)
T TIGR00368 210 GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPG 289 (499)
T ss_pred CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhccccccccCCccccccccchhhhhCCccccchh
Confidence 346899999999999999999987531 1111111111000011110000001
Q ss_pred HHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCc-ccCCCCcccCCCCCceEEEecCCC
Q 011983 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTN-VQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 208 ~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~-v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
.+. .....+|||||++.+- ..+...|++.+++.+. +.-.|. ......++.+|+|+|.-
T Consensus 290 ~i~-------lA~~GvLfLDEi~e~~-------------~~~~~~L~~~LE~~~v~i~r~g~-~~~~pa~frlIaa~Npc 348 (499)
T TIGR00368 290 EIS-------LAHNGVLFLDELPEFK-------------RSVLDALREPIEDGSISISRASA-KIFYPARFQLVAAMNPC 348 (499)
T ss_pred hhh-------ccCCCeEecCChhhCC-------------HHHHHHHHHHHHcCcEEEEecCc-ceeccCCeEEEEecCCc
Confidence 112 3345799999998653 2345667776653221 111111 01224578899999852
Q ss_pred -----------------------CCCccccccCCCceEEEecCC
Q 011983 287 -----------------------STLYAPLIRDGRMEKFYWAPT 307 (473)
Q Consensus 287 -----------------------~~Ld~aLlR~GRfd~~i~~P~ 307 (473)
..|..+|+. |||..+.+|.
T Consensus 349 pcg~~~~~~~~c~c~~~~~~~y~~~is~pllD--R~dl~~~~~~ 390 (499)
T TIGR00368 349 PCGHYGGKNTHCRCSPQQISRYWNKLSGPFLD--RIDLSVEVPL 390 (499)
T ss_pred ccCcCCCCcccccCCHHHHHHHhhhccHhHHh--hCCEEEEEcC
Confidence 158889999 9999998654
No 206
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.29 E-value=4.5e-06 Score=86.93 Aligned_cols=32 Identities=31% Similarity=0.617 Sum_probs=28.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
+...+|+|+.||||+|+|||+|.-++++.+..
T Consensus 57 ~~~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~ 88 (362)
T PF03969_consen 57 PPPPPPKGLYLWGPVGRGKTMLMDLFYDSLPI 88 (362)
T ss_pred ccCCCCceEEEECCCCCchhHHHHHHHHhCCc
Confidence 34568999999999999999999999999765
No 207
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.27 E-value=2.3e-05 Score=77.80 Aligned_cols=178 Identities=17% Similarity=0.259 Sum_probs=105.8
Q ss_pred CCCChhhHHHHHHHHHHhhhcCC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-C--CCcEEecc-------------cc
Q 011983 130 LYIAPAFMDKVVVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKM-G--INPIMMSA-------------GE 192 (473)
Q Consensus 130 ~~i~~~~~d~~~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~lAkaIA~~l-g--~~~i~vs~-------------s~ 192 (473)
.|-|+.+......+...+++... ....-..+|+|||+|+||-+.+.++-+++ | +.=+.+.. +.
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~~~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEist 85 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLSSTGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEIST 85 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhcccCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEE
Confidence 34444444333333344444321 11233579999999999999999999984 2 11111100 01
Q ss_pred ccc--------CCCCChHH-HHHHHHHHHHHHHH-----cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhc
Q 011983 193 LES--------GNAGEPAK-LIRQRYREAADIIK-----KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258 (473)
Q Consensus 193 l~s--------~~~Ge~~~-~ir~~f~~A~~~~~-----~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld 258 (473)
+.+ .-+|...+ .+.++.++.....+ +..-.|++|.|+|.+... .+..|..-++
T Consensus 86 vsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ead~LT~d-------------AQ~aLRRTME 152 (351)
T KOG2035|consen 86 VSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEADELTRD-------------AQHALRRTME 152 (351)
T ss_pred ecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEechHhhhHH-------------HHHHHHHHHH
Confidence 111 12343333 34455554432111 233469999999988532 2244554333
Q ss_pred CCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce-EEEecCCHHHHHHHHHhhcCCCCCC--HHHHHHHHhc
Q 011983 259 NPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME-KFYWAPTREDRIGVCSGIFRTDNVP--KEDIVKLVDT 335 (473)
Q Consensus 259 ~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd-~~i~~P~~eeR~~Il~~~l~~~~v~--~~~l~~l~~~ 335 (473)
.+..++.+|..+|..+.+-+++++ |.= ..+..|+.++-..++...+.++++. .+-+.++++.
T Consensus 153 -------------kYs~~~RlIl~cns~SriIepIrS--RCl~iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~k 217 (351)
T KOG2035|consen 153 -------------KYSSNCRLILVCNSTSRIIEPIRS--RCLFIRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEK 217 (351)
T ss_pred -------------HHhcCceEEEEecCcccchhHHhh--heeEEeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHH
Confidence 456788999999999999999988 642 2222699999999999999887654 4445555555
No 208
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.26 E-value=2.1e-05 Score=93.30 Aligned_cols=135 Identities=19% Similarity=0.291 Sum_probs=75.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc---EEeccccc---ccCCC----CC---h----HHHHHHHHH------
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP---IMMSAGEL---ESGNA----GE---P----AKLIRQRYR------ 210 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~---i~vs~s~l---~s~~~----Ge---~----~~~ir~~f~------ 210 (473)
....+.+.|+||+|+|||+||+++++.+...| +.+....+ ...+. .. . ...+.++..
T Consensus 204 ~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~~~~~~~~~~~~~l~~~~l~~il~~~~~~~ 283 (1153)
T PLN03210 204 SEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYSSANPDDYNMKLHLQRAFLSEILDKKDIKI 283 (1153)
T ss_pred cCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcccccccccchhHHHHHHHHHHHhCCCCccc
Confidence 45678899999999999999999999875543 11111000 00000 00 0 011111111
Q ss_pred ----HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 211 ----EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 211 ----~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
..++.+ ..++.+|+|||+|.. .+...|....+ |. ..+..||+||.+.
T Consensus 284 ~~~~~~~~~L-~~krvLLVLDdv~~~---------------~~l~~L~~~~~----------~~---~~GsrIIiTTrd~ 334 (1153)
T PLN03210 284 YHLGAMEERL-KHRKVLIFIDDLDDQ---------------DVLDALAGQTQ----------WF---GSGSRIIVITKDK 334 (1153)
T ss_pred CCHHHHHHHH-hCCeEEEEEeCCCCH---------------HHHHHHHhhCc----------cC---CCCcEEEEEeCcH
Confidence 111111 567889999998631 12233333222 11 3456788898875
Q ss_pred CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCCC
Q 011983 287 STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD 322 (473)
Q Consensus 287 ~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~ 322 (473)
..+ +....++.|. .|+.++..++|..+....
T Consensus 335 ~vl-----~~~~~~~~~~v~~l~~~ea~~LF~~~Af~~ 367 (1153)
T PLN03210 335 HFL-----RAHGIDHIYEVCLPSNELALEMFCRSAFKK 367 (1153)
T ss_pred HHH-----HhcCCCeEEEecCCCHHHHHHHHHHHhcCC
Confidence 433 3234666666 589999999998776543
No 209
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.24 E-value=5.5e-06 Score=74.06 Aligned_cols=74 Identities=15% Similarity=0.226 Sum_probs=46.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc----------------------CCCCChHHHHHHHHHHHHH
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----------------------GNAGEPAKLIRQRYREAAD 214 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s----------------------~~~Ge~~~~ir~~f~~A~~ 214 (473)
++|+||||+|||+++..++... +.+.+.++...... .+.... ........+..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 79 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDP--AAARLLSKAER 79 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCC--cHHHHHHHHHH
Confidence 6899999999999999999886 44555555432211 111111 11111122233
Q ss_pred HHHcCCceEEEecCCCCcccc
Q 011983 215 IIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~~ 235 (473)
.+....|.+|+|||+..+...
T Consensus 80 ~~~~~~~~~lviDe~~~~~~~ 100 (165)
T cd01120 80 LRERGGDDLIILDELTRLVRA 100 (165)
T ss_pred HHhCCCCEEEEEEcHHHHHHH
Confidence 344788999999999988643
No 210
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.21 E-value=1.5e-05 Score=86.62 Aligned_cols=36 Identities=19% Similarity=0.205 Sum_probs=31.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
....+.+||+||||||||++++++|+++|..+....
T Consensus 42 ~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~ 77 (519)
T PF03215_consen 42 SSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWI 77 (519)
T ss_pred CCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEec
Confidence 345679999999999999999999999998877654
No 211
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.21 E-value=1.5e-06 Score=87.05 Aligned_cols=142 Identities=16% Similarity=0.244 Sum_probs=82.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCc-E--EecccccccCCCCChHHHHHHHHHHHHHHHH-------cCCceEEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINP-I--MMSAGELESGNAGEPAKLIRQRYREAADIIK-------KGKMCCLFIN 227 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~-i--~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-------~~~p~ILfID 227 (473)
+.+||+||+|||||.+++..-+.+.-.- + .+..+.. -+...++.+.+...+..+ .++.+|+|||
T Consensus 34 ~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~------Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiD 107 (272)
T PF12775_consen 34 RPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ------TTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFID 107 (272)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT------HHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEE
T ss_pred CcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC------CCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEec
Confidence 5689999999999999998777654322 2 2222211 123333333322110000 3456799999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccC-----CCCCceEEEecCCCC---CCccccccCCCc
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE-----ENPRVPIIVTGNDFS---TLYAPLIRDGRM 299 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~-----~~~~V~VIaTTN~~~---~Ld~aLlR~GRf 299 (473)
|+.--.....+ .+...++|.++++ ..|+|... .-.++.+|+|.|... .|++-|+| .|
T Consensus 108 DlN~p~~d~yg-------tq~~iElLRQ~i~------~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r--~f 172 (272)
T PF12775_consen 108 DLNMPQPDKYG-------TQPPIELLRQLID------YGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLR--HF 172 (272)
T ss_dssp TTT-S---TTS---------HHHHHHHHHHH------CSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHT--TE
T ss_pred ccCCCCCCCCC-------CcCHHHHHHHHHH------hcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhh--he
Confidence 99855433222 2345678888887 45655432 235788888887532 47778888 77
Q ss_pred eEEEe-cCCHHHHHHHHHhhcC
Q 011983 300 EKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 300 d~~i~-~P~~eeR~~Il~~~l~ 320 (473)
-.... .|+.+....|+..++.
T Consensus 173 ~i~~~~~p~~~sl~~If~~il~ 194 (272)
T PF12775_consen 173 NILNIPYPSDESLNTIFSSILQ 194 (272)
T ss_dssp EEEE----TCCHHHHHHHHHHH
T ss_pred EEEEecCCChHHHHHHHHHHHh
Confidence 65544 6999999988876654
No 212
>PF05729 NACHT: NACHT domain
Probab=98.20 E-value=1.7e-05 Score=71.47 Aligned_cols=145 Identities=21% Similarity=0.215 Sum_probs=75.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC---------CcEEecccccccCC-CCChHHHHHHHHHH--------HHHHHHcC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI---------NPIMMSAGELESGN-AGEPAKLIRQRYRE--------AADIIKKG 219 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~---------~~i~vs~s~l~s~~-~Ge~~~~ir~~f~~--------A~~~~~~~ 219 (473)
+.++|+|+||+|||++++.++..+.. .++.+...+..... .......|...+.. ....++..
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~ 80 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKN 80 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcC
Confidence 35899999999999999999988421 12233333322210 00111112111111 11233367
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf 299 (473)
...+|+||.+|.+...... .........|.+++. ....+++.+|+|++.... +. +.+...-
T Consensus 81 ~~~llilDglDE~~~~~~~-----~~~~~~~~~l~~l~~------------~~~~~~~~liit~r~~~~-~~-~~~~~~~ 141 (166)
T PF05729_consen 81 KRVLLILDGLDELEEQDQS-----QERQRLLDLLSQLLP------------QALPPGVKLIITSRPRAF-PD-LRRRLKQ 141 (166)
T ss_pred CceEEEEechHhcccchhh-----hHHHHHHHHHHHHhh------------hccCCCCeEEEEEcCChH-HH-HHHhcCC
Confidence 7889999999988754221 112233344444443 012456777777754332 11 2221111
Q ss_pred eEEEec--CCHHHHHHHHHhhcCC
Q 011983 300 EKFYWA--PTREDRIGVCSGIFRT 321 (473)
Q Consensus 300 d~~i~~--P~~eeR~~Il~~~l~~ 321 (473)
...+.+ -+.+++.++++.++..
T Consensus 142 ~~~~~l~~~~~~~~~~~~~~~f~~ 165 (166)
T PF05729_consen 142 AQILELEPFSEEDIKQYLRKYFSN 165 (166)
T ss_pred CcEEEECCCCHHHHHHHHHHHhhc
Confidence 123343 4788888988888753
No 213
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=98.20 E-value=2.9e-06 Score=94.58 Aligned_cols=154 Identities=14% Similarity=0.158 Sum_probs=88.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccccCCCCChHHHHHHHHHHH---H-----HHHHcCCceEEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREA---A-----DIIKKGKMCCLF 225 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A---~-----~~~~~~~p~ILf 225 (473)
...|||+|++||||+++|++|.+... .+|+.++|..+.. +..-.++|... . ..+.......||
T Consensus 348 ~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~------~~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ 421 (638)
T PRK11388 348 SFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPD------EALAEEFLGSDRTDSENGRLSKFELAHGGTLF 421 (638)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCCh------HHHHHHhcCCCCcCccCCCCCceeECCCCEEE
Confidence 34599999999999999999998754 6999999976531 11111222211 0 011134477899
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc------
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM------ 299 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf------ 299 (473)
|||||.+-.. ++..|+.++++.....+++. ....-++.||+|||..- ..+...|+|
T Consensus 422 ldei~~l~~~-------------~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~t~~~l---~~~~~~~~f~~dL~~ 483 (638)
T PRK11388 422 LEKVEYLSPE-------------LQSALLQVLKTGVITRLDSR--RLIPVDVRVIATTTADL---AMLVEQNRFSRQLYY 483 (638)
T ss_pred EcChhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceEEeeEEEEEeccCCH---HHHHhcCCChHHHhh
Confidence 9999977432 33556666653332223322 01123678999988642 233344555
Q ss_pred ---eEEEecCCHHHHH----HHHHhhcCC--------CCCCHHHHHHHHh
Q 011983 300 ---EKFYWAPTREDRI----GVCSGIFRT--------DNVPKEDIVKLVD 334 (473)
Q Consensus 300 ---d~~i~~P~~eeR~----~Il~~~l~~--------~~v~~~~l~~l~~ 334 (473)
...+.+|...+|. .+++.++.. ..++.+.+..|..
T Consensus 484 ~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~ 533 (638)
T PRK11388 484 ALHAFEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVS 533 (638)
T ss_pred hhceeEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHc
Confidence 3345578877774 233333321 2356666666554
No 214
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=98.19 E-value=1.5e-06 Score=84.32 Aligned_cols=110 Identities=15% Similarity=0.218 Sum_probs=69.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh-CC----CcEEecccccccCCCCChHHHHH---HHHHHHHHHHHcCCceEEEecCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM-GI----NPIMMSAGELESGNAGEPAKLIR---QRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l-g~----~~i~vs~s~l~s~~~Ge~~~~ir---~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
..++|.||||||||+.+.++|+++ |- -++.+++++=. | ...+| +.|.+-+-.+-.++..||++||+
T Consensus 49 P~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASdeR----G--IDvVRn~IK~FAQ~kv~lp~grhKIiILDEA 122 (333)
T KOG0991|consen 49 PNLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDER----G--IDVVRNKIKMFAQKKVTLPPGRHKIIILDEA 122 (333)
T ss_pred CceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCcccc----c--cHHHHHHHHHHHHhhccCCCCceeEEEeecc
Confidence 358899999999999999999994 42 34556655332 1 22333 23332221111456679999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceE
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~ 301 (473)
|++... . ++.|..-++ -+.....++.++|..+.+-+++.+ |+-.
T Consensus 123 DSMT~g----A---------QQAlRRtME-------------iyS~ttRFalaCN~s~KIiEPIQS--RCAi 166 (333)
T KOG0991|consen 123 DSMTAG----A---------QQALRRTME-------------IYSNTTRFALACNQSEKIIEPIQS--RCAI 166 (333)
T ss_pred chhhhH----H---------HHHHHHHHH-------------HHcccchhhhhhcchhhhhhhHHh--hhHh
Confidence 977421 1 244444333 234555688899999988888877 6543
No 215
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.19 E-value=3e-06 Score=96.14 Aligned_cols=144 Identities=14% Similarity=0.151 Sum_probs=80.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHH-HH----HHH-HHHHHHHcCCceEEEecCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-RQ----RYR-EAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~i-r~----~f~-~A~~~~~~~~p~ILfIDEi 229 (473)
....|||+|.||||||.+|+.+++...... +.++.... -+|-++... +. -|. ++- .+......+++|||+
T Consensus 491 gdihVLLvGDPGTGKSqLAr~Ih~lspR~~-ytsG~~~s--~vgLTa~~~~~d~~tG~~~le~G-aLvlAdgGtL~IDEi 566 (915)
T PTZ00111 491 GIINVLLCGDPGTAKSQLLHYTHLLSPRSI-YTSGKSSS--SVGLTASIKFNESDNGRAMIQPG-AVVLANGGVCCIDEL 566 (915)
T ss_pred CCceEEEeCCCCccHHHHHHHHHHhCCccc-cCCCCCCc--cccccchhhhcccccCcccccCC-cEEEcCCCeEEecch
Confidence 345899999999999999999998643221 11111000 011111100 00 000 000 111233569999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCceEEEecCCC-------------CCCcccccc
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDF-------------STLYAPLIR 295 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V~VIaTTN~~-------------~~Ld~aLlR 295 (473)
|++... ....|++.++..+ .+.-.|. ...-..++.||+|+|.. -.|+++|++
T Consensus 567 dkms~~-------------~Q~aLlEaMEqqtIsI~KaGi-~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLS 632 (915)
T PTZ00111 567 DKCHNE-------------SRLSLYEVMEQQTVTIAKAGI-VATLKAETAILASCNPINSRYNKNKAVIENINISPSLFT 632 (915)
T ss_pred hhCCHH-------------HHHHHHHHHhCCEEEEecCCc-ceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhh
Confidence 987432 2355666665221 1111122 11234678899999874 247899999
Q ss_pred CCCceEEEec---CCHHHHHHHHHhhc
Q 011983 296 DGRMEKFYWA---PTREDRIGVCSGIF 319 (473)
Q Consensus 296 ~GRfd~~i~~---P~~eeR~~Il~~~l 319 (473)
|||.++.+ |+.+.=..|-++++
T Consensus 633 --RFDLIf~l~D~~d~~~D~~lA~hI~ 657 (915)
T PTZ00111 633 --RFDLIYLVLDHIDQDTDQLISLSIA 657 (915)
T ss_pred --hhcEEEEecCCCChHHHHHHHHHHH
Confidence 99999883 77666556544443
No 216
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=98.17 E-value=1.8e-06 Score=89.11 Aligned_cols=56 Identities=21% Similarity=0.296 Sum_probs=43.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
-+++||.||||||||.||-++|+++| .||..++++++.+..+..++ .+.+.|++|.
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~isgSEiyS~e~kKTE-~L~qa~RraI 107 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVSISGSEIYSSEVKKTE-ALTQAFRRAI 107 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEEEEGGGG-BTTC-HHH-HHHHHHHCSE
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeEcccceeeecccCchH-HHHHHHHHhh
Confidence 48999999999999999999999998 79999999999987776665 4556777653
No 217
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=98.17 E-value=3.4e-06 Score=92.06 Aligned_cols=160 Identities=13% Similarity=0.202 Sum_probs=90.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHH-HHHHHHHH-----------HHHHcCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLI-RQRYREAA-----------DIIKKGK 220 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~i-r~~f~~A~-----------~~~~~~~ 220 (473)
....|||+|++|||||++|++|.... +.+|+.++|..+.. ..+ ..+|.... ..+....
T Consensus 218 ~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 290 (534)
T TIGR01817 218 SNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSE-------TLLESELFGHEKGAFTGAIAQRKGRFELAD 290 (534)
T ss_pred cCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCH-------HHHHHHHcCCCCCccCCCCcCCCCcccccC
Confidence 34569999999999999999999885 46999999987632 111 11221110 0111334
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc-
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM- 299 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf- 299 (473)
...|||||||.+.. .++..|+.++++.+.....+. .....++.||+||+.. +. .+...|+|
T Consensus 291 ~GtL~ldei~~L~~-------------~~Q~~Ll~~l~~~~~~~~~~~--~~~~~~~riI~~s~~~--l~-~~~~~~~f~ 352 (534)
T TIGR01817 291 GGTLFLDEIGEISP-------------AFQAKLLRVLQEGEFERVGGN--RTLKVDVRLVAATNRD--LE-EAVAKGEFR 352 (534)
T ss_pred CCeEEEechhhCCH-------------HHHHHHHHHHhcCcEEECCCC--ceEeecEEEEEeCCCC--HH-HHHHcCCCC
Confidence 67899999998743 233556666653222122221 1122467899988764 11 12334444
Q ss_pred -------eE-EEecCCHHHH----HHHHHhhcCC--------CCCCHHHHHHHHhc-CCCCc
Q 011983 300 -------EK-FYWAPTREDR----IGVCSGIFRT--------DNVPKEDIVKLVDT-FPGQS 340 (473)
Q Consensus 300 -------d~-~i~~P~~eeR----~~Il~~~l~~--------~~v~~~~l~~l~~~-~sga~ 340 (473)
.. .|.+|...+| ..|++.++.. ..++.+.+..|... |+|.-
T Consensus 353 ~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WPGNv 414 (534)
T TIGR01817 353 ADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWPGNV 414 (534)
T ss_pred HHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCCChH
Confidence 22 4557766555 2344444331 24566666666554 44443
No 218
>PHA00729 NTP-binding motif containing protein
Probab=98.17 E-value=4.1e-06 Score=81.55 Aligned_cols=28 Identities=21% Similarity=0.151 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
...++|+|+||||||++|.+|++.++..
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~~~ 44 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVFWK 44 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHHhh
Confidence 3579999999999999999999998643
No 219
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.16 E-value=8.1e-06 Score=88.73 Aligned_cols=162 Identities=15% Similarity=0.189 Sum_probs=91.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHHHHH-----------HHHHcC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKG 219 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~~A~-----------~~~~~~ 219 (473)
..+..|||+|++||||+++|++|.... +.+|+.++|..+... .+. .+|.... ..+...
T Consensus 208 ~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~-------~~e~~lfG~~~g~~~ga~~~~~g~~~~a 280 (509)
T PRK05022 208 ASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPES-------LAESELFGHVKGAFTGAISNRSGKFELA 280 (509)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChH-------HHHHHhcCccccccCCCcccCCcchhhc
Confidence 345679999999999999999999884 468999999876421 111 1221100 011134
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------CCccc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAP 292 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-------~Ld~a 292 (473)
....|||||||.+... ++..|+.++++.+...+.+. .....++.||+|||..- .+.+.
T Consensus 281 ~gGtL~ldeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l~~~~~~~~f~~d 345 (509)
T PRK05022 281 DGGTLFLDEIGELPLA-------------LQAKLLRVLQYGEIQRVGSD--RSLRVDVRVIAATNRDLREEVRAGRFRAD 345 (509)
T ss_pred CCCEEEecChhhCCHH-------------HHHHHHHHHhcCCEeeCCCC--cceecceEEEEecCCCHHHHHHcCCccHH
Confidence 4678999999987532 33455555553222222222 12345788999998742 12223
Q ss_pred cccCCCceE-EEecCCHHHHHH-H---HHhhcC---------CCCCCHHHHHHHHh-cCCCCc
Q 011983 293 LIRDGRMEK-FYWAPTREDRIG-V---CSGIFR---------TDNVPKEDIVKLVD-TFPGQS 340 (473)
Q Consensus 293 LlR~GRfd~-~i~~P~~eeR~~-I---l~~~l~---------~~~v~~~~l~~l~~-~~sga~ 340 (473)
|.. |+.. .|.+|...+|.+ | +++++. ...++.+.+..|.. .|+|.-
T Consensus 346 L~~--rl~~~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGNv 406 (509)
T PRK05022 346 LYH--RLSVFPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGNV 406 (509)
T ss_pred HHh--cccccEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCcH
Confidence 332 3333 344787666642 2 333322 13466666666654 445443
No 220
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.16 E-value=7e-06 Score=70.56 Aligned_cols=24 Identities=25% Similarity=0.265 Sum_probs=21.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
|.||||||+|||++|+.+|+.+.-
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~ 24 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLK 24 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHH
Confidence 579999999999999999988653
No 221
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.15 E-value=5.3e-06 Score=84.78 Aligned_cols=58 Identities=21% Similarity=0.195 Sum_probs=49.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
-.-+++|+.||||||||.||-+||+++| .||..++++++.+--+..++. +.+.|++|.
T Consensus 63 ~aGrgiLi~GppgTGKTAlA~gIa~eLG~dvPF~~isgsEiYS~E~kKTE~-L~qa~RraI 122 (450)
T COG1224 63 MAGRGILIVGPPGTGKTALAMGIARELGEDVPFVAISGSEIYSLEVKKTEA-LTQALRRAI 122 (450)
T ss_pred ccccEEEEECCCCCcHHHHHHHHHHHhCCCCCceeeccceeeeecccHHHH-HHHHHHHhh
Confidence 4458999999999999999999999997 799999999999877776654 557788775
No 222
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.14 E-value=9.9e-06 Score=86.83 Aligned_cols=126 Identities=17% Similarity=0.221 Sum_probs=79.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccc-----cCCCCChHHHHHHHHHHHHH-----HHHcCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-----SGNAGEPAKLIRQRYREAAD-----IIKKGK 220 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~-----s~~~Ge~~~~ir~~f~~A~~-----~~~~~~ 220 (473)
.+.+..|||.|.+||||.++|++|=+.+ +-+|+.++|+-+- |..+|-. +..|--|.. +++...
T Consensus 265 A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~LlESELFGye----~GAFTGA~~~GK~GlfE~A~ 340 (560)
T COG3829 265 AKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETLLESELFGYE----KGAFTGASKGGKPGLFELAN 340 (560)
T ss_pred cCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHHHHHHHhCcC----CccccccccCCCCcceeecc
Confidence 4667889999999999999999998875 4599999996442 2222211 112222220 011222
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
..-||+|||-.+-- .++.-|+..+.+-+-..+.|. +...-+|.||+|||+. ...++..|+|-
T Consensus 341 gGTLFLDEIgempl-------------~LQaKLLRVLQEkei~rvG~t--~~~~vDVRIIAATN~n---L~~~i~~G~FR 402 (560)
T COG3829 341 GGTLFLDEIGEMPL-------------PLQAKLLRVLQEKEIERVGGT--KPIPVDVRIIAATNRN---LEKMIAEGTFR 402 (560)
T ss_pred CCeEEehhhccCCH-------------HHHHHHHHHHhhceEEecCCC--CceeeEEEEEeccCcC---HHHHHhcCcch
Confidence 56799999976532 344556666665555556655 3345689999999984 23355667773
Q ss_pred E
Q 011983 301 K 301 (473)
Q Consensus 301 ~ 301 (473)
+
T Consensus 403 e 403 (560)
T COG3829 403 E 403 (560)
T ss_pred h
Confidence 3
No 223
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.13 E-value=2.7e-05 Score=81.38 Aligned_cols=149 Identities=15% Similarity=0.145 Sum_probs=94.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc-------------c-------------------ccccCCCCChHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA-------------G-------------------ELESGNAGEPAKL 204 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~-------------s-------------------~l~s~~~Ge~~~~ 204 (473)
-.|+||-|++|||||+++++|+.-+.-.-+...+ . .+..--.|.++..
T Consensus 38 iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDr 117 (423)
T COG1239 38 IGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDECRAKGDELEWLPREKRKVPFVALPLGATEDR 117 (423)
T ss_pred cceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHHHHhhccccccccccceecceecCCCccchhh
Confidence 3689999999999999999999986422111111 0 0111112223321
Q ss_pred H------HHHHHHHH-----HHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCC-CcccCCCCcccC
Q 011983 205 I------RQRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNP-TNVQLPGMYNQE 272 (473)
Q Consensus 205 i------r~~f~~A~-----~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~-~~v~l~g~~~~~ 272 (473)
+ .+..+.-. .++.+....||+|||+..+.. .+...|++.+.+. +.|+..|... .
T Consensus 118 vvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL~d-------------~lvd~LLd~aaeG~n~vereGisi-~ 183 (423)
T COG1239 118 LVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLLDD-------------HLVDALLDVAAEGVNDVEREGISI-R 183 (423)
T ss_pred hccccCHHHHHhcCccccCCcchhhccCCEEEEeccccccH-------------HHHHHHHHHHHhCCceeeeCceee-c
Confidence 1 11111100 011133346999999986632 3445677777655 6778888622 5
Q ss_pred CCCCceEEEecCCC-CCCccccccCCCceEEEe---cCCHHHHHHHHHhhcCC
Q 011983 273 ENPRVPIIVTGNDF-STLYAPLIRDGRMEKFYW---APTREDRIGVCSGIFRT 321 (473)
Q Consensus 273 ~~~~V~VIaTTN~~-~~Ld~aLlR~GRfd~~i~---~P~~eeR~~Il~~~l~~ 321 (473)
+.-++++|+|+|.. ..|-|.|+. ||...+. ..+.++|.+|.+.-..-
T Consensus 184 hpa~fvligTmNPEeGeLrpqLlD--Rfg~~v~~~~~~~~~~rv~Ii~r~~~f 234 (423)
T COG1239 184 HPARFLLIGTMNPEEGELRPQLLD--RFGLEVDTHYPLDLEERVEIIRRRLAF 234 (423)
T ss_pred cCccEEEEeecCccccccchhhHh--hhcceeeccCCCCHHHHHHHHHHHHHh
Confidence 66788899999975 468888999 9988887 36899999999866544
No 224
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.11 E-value=1.8e-05 Score=89.05 Aligned_cols=159 Identities=15% Similarity=0.219 Sum_probs=89.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc-----CCCCChH-------HHHHHHHHHHHHHHHcCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----GNAGEPA-------KLIRQRYREAADIIKKGK 220 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s-----~~~Ge~~-------~~ir~~f~~A~~~~~~~~ 220 (473)
....|||+|++|||||++|++|.... +.+|+.++|..+.. .++|... ......|. ...
T Consensus 398 ~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~~lfg~~~~~~~g~~~~~~g~le-------~a~ 470 (686)
T PRK15429 398 SDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLESDLFGHERGAFTGASAQRIGRFE-------LAD 470 (686)
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhhhhcCcccccccccccchhhHHH-------hcC
Confidence 34579999999999999999998874 56999999876532 1122100 00011233 334
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
...|||||||.+-. .+...|+.++++.+...+.+. .....++.||+||+..- ..+...|+|.
T Consensus 471 ~GtL~Ldei~~L~~-------------~~Q~~L~~~l~~~~~~~~g~~--~~~~~~~RiI~~t~~~l---~~~~~~~~f~ 532 (686)
T PRK15429 471 KSSLFLDEVGDMPL-------------ELQPKLLRVLQEQEFERLGSN--KIIQTDVRLIAATNRDL---KKMVADREFR 532 (686)
T ss_pred CCeEEEechhhCCH-------------HHHHHHHHHHHhCCEEeCCCC--CcccceEEEEEeCCCCH---HHHHHcCccc
Confidence 68999999998743 233455555543221122221 12235788999987641 1122223332
Q ss_pred --------E-EEecCCHHHHHH----HHHhhcCC---------CCCCHHHHHHHHh-cCCCC
Q 011983 301 --------K-FYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 339 (473)
Q Consensus 301 --------~-~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~-~~sga 339 (473)
. .|.+|...+|.+ +++.++.. ..++.+.+..|.. .|+|.
T Consensus 533 ~~L~~~l~~~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WPGN 594 (686)
T PRK15429 533 SDLYYRLNVFPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWPGN 594 (686)
T ss_pred HHHHhccCeeEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCc
Confidence 2 345787777643 33333321 1356666666644 44444
No 225
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=98.07 E-value=4.6e-06 Score=84.14 Aligned_cols=133 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCC------cEEecccccccCCCCChHHHHHHHHHHHHH--HHH-cCCceEEEecCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAGELESGNAGEPAKLIRQRYREAAD--IIK-KGKMCCLFINDL 229 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~------~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~--~~~-~~~p~ILfIDEi 229 (473)
.+|+|||||||||....+.|..+-.+ +..+++++-.. .+- .+.-.+.|.-+.. +.+ ...+..+++||.
T Consensus 64 h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~rg--id~-vr~qi~~fast~~~~~fst~~~fKlvILDEA 140 (360)
T KOG0990|consen 64 HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDDRG--IDP-VRQQIHLFASTQQPTTYSTHAAFKLVILDEA 140 (360)
T ss_pred cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCccC--Ccc-hHHHHHHHHhhccceeccccCceeEEEecch
Confidence 89999999999999999999986442 11223332111 111 1111233443320 111 126789999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEecC-CH
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAP-TR 308 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P-~~ 308 (473)
|++... .| ..|....+ ....+..++.-+|.+..+.|+++. |+.++-+.| +.
T Consensus 141 DaMT~~----AQ---------nALRRvie-------------k~t~n~rF~ii~n~~~ki~pa~qs--Rctrfrf~pl~~ 192 (360)
T KOG0990|consen 141 DAMTRD----AQ---------NALRRVIE-------------KYTANTRFATISNPPQKIHPAQQS--RCTRFRFAPLTM 192 (360)
T ss_pred hHhhHH----HH---------HHHHHHHH-------------HhccceEEEEeccChhhcCchhhc--ccccCCCCCCCh
Confidence 988532 12 33333332 335677788889999999999998 888877743 44
Q ss_pred HHHHHHHHhhcCCC
Q 011983 309 EDRIGVCSGIFRTD 322 (473)
Q Consensus 309 eeR~~Il~~~l~~~ 322 (473)
..-..++.++...+
T Consensus 193 ~~~~~r~shi~e~e 206 (360)
T KOG0990|consen 193 AQQTERQSHIRESE 206 (360)
T ss_pred hhhhhHHHHHHhcc
Confidence 55555566666553
No 226
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=98.06 E-value=9.7e-06 Score=88.43 Aligned_cols=136 Identities=15% Similarity=0.235 Sum_probs=79.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH-----------hCCCcEEecccccccC-----CCCChHHHHHHHHHHHH-----
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK-----------MGINPIMMSAGELESG-----NAGEPAKLIRQRYREAA----- 213 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~-----------lg~~~i~vs~s~l~s~-----~~Ge~~~~ir~~f~~A~----- 213 (473)
+....|||+|++||||+++|++|-+. .+.+|+.++|+.+... .+|... ..|.-+.
T Consensus 240 ~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal~e~lleseLFG~~~----gaftga~~~~~~ 315 (538)
T PRK15424 240 RSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAIAESLLEAELFGYEE----GAFTGSRRGGRA 315 (538)
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccCChhhHHHHhcCCcc----ccccCccccccC
Confidence 34567999999999999999999887 4569999999866421 111100 0011110
Q ss_pred HHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcccc
Q 011983 214 DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293 (473)
Q Consensus 214 ~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aL 293 (473)
.+++......||||||+.+-. .++..|+.++++-+...+.+. ....-++.||++||.. |. .+
T Consensus 316 Gl~e~A~gGTLfLdeI~~Lp~-------------~~Q~kLl~~L~e~~~~r~G~~--~~~~~dvRiIaat~~~--L~-~~ 377 (538)
T PRK15424 316 GLFEIAHGGTLFLDEIGEMPL-------------PLQTRLLRVLEEKEVTRVGGH--QPVPVDVRVISATHCD--LE-ED 377 (538)
T ss_pred CchhccCCCEEEEcChHhCCH-------------HHHHHHHhhhhcCeEEecCCC--ceeccceEEEEecCCC--HH-HH
Confidence 011233467899999997743 233556666654333333332 1223567899998764 11 23
Q ss_pred ccCCCceE---------EEecCCHHHHH
Q 011983 294 IRDGRMEK---------FYWAPTREDRI 312 (473)
Q Consensus 294 lR~GRfd~---------~i~~P~~eeR~ 312 (473)
...|+|.. .+.+|...+|.
T Consensus 378 v~~g~Fr~dL~yrL~~~~I~lPPLReR~ 405 (538)
T PRK15424 378 VRQGRFRRDLFYRLSILRLQLPPLRERV 405 (538)
T ss_pred HhcccchHHHHHHhcCCeecCCChhhch
Confidence 34444442 33367766664
No 227
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.06 E-value=1.7e-05 Score=86.55 Aligned_cols=157 Identities=14% Similarity=0.170 Sum_probs=87.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC-----CCCChH-------HHHHHHHHHHHHHHHcCCceE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPA-------KLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~-------~~ir~~f~~A~~~~~~~~p~I 223 (473)
-|||+|++||||+++|+++-... ..+|+.++|..+... .+|... ..-..+|+ ......
T Consensus 229 pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~~e~elFG~~~~~~~~~~~~~~g~~e-------~a~~Gt 301 (520)
T PRK10820 229 PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDVVESELFGHAPGAYPNALEGKKGFFE-------QANGGS 301 (520)
T ss_pred CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHHHHHHhcCCCCCCcCCcccCCCChhh-------hcCCCE
Confidence 49999999999999999986664 358999999866421 111100 00011233 334678
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------CCccccccC
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPLIRD 296 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-------~Ld~aLlR~ 296 (473)
|||||||.+... ++..|++++.+.+.....+. .....++.||+||+..- .+.+.|..
T Consensus 302 L~LdeI~~L~~~-------------~Q~~Ll~~l~~~~~~~~g~~--~~~~~~vRiI~st~~~l~~l~~~g~f~~dL~~- 365 (520)
T PRK10820 302 VLLDEIGEMSPR-------------MQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQKNLVELVQKGEFREDLYY- 365 (520)
T ss_pred EEEeChhhCCHH-------------HHHHHHHHHhcCCcccCCCC--cceeeeeEEEEecCCCHHHHHHcCCccHHHHh-
Confidence 999999987432 23445555553221112111 12235678999887641 23333444
Q ss_pred CCceE-EEecCCHHHHH-HH---HHhhcC---------CCCCCHHHHHHHHhc-CCCC
Q 011983 297 GRMEK-FYWAPTREDRI-GV---CSGIFR---------TDNVPKEDIVKLVDT-FPGQ 339 (473)
Q Consensus 297 GRfd~-~i~~P~~eeR~-~I---l~~~l~---------~~~v~~~~l~~l~~~-~sga 339 (473)
|+.. .+.+|...+|. .| ++.++. ...++.+.+..|... |+|.
T Consensus 366 -rL~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~WPGN 422 (520)
T PRK10820 366 -RLNVLTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYGWPGN 422 (520)
T ss_pred -hcCeeEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCCCCCH
Confidence 5443 34477766664 22 223322 124666777766654 5544
No 228
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=98.04 E-value=1.3e-05 Score=87.23 Aligned_cols=110 Identities=14% Similarity=0.266 Sum_probs=67.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHH-------HHH-----HHHHc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYR-------EAA-----DIIKK 218 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~-------~A~-----~~~~~ 218 (473)
+....|||+|++||||+++|++|-+.. +.+|+.++|+.+.. ..+. .+|. -|. .+++.
T Consensus 233 ~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e-------~lleseLFG~~~gaftga~~~~~~Gl~e~ 305 (526)
T TIGR02329 233 RSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAE-------SLLEAELFGYEEGAFTGARRGGRTGLIEA 305 (526)
T ss_pred CCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCCh-------hHHHHHhcCCcccccccccccccccchhh
Confidence 345679999999999999999998774 46999999986632 1111 1221 010 11113
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
.....|||||||.+-. .++..|+.++.+.+...+.+. .....++.||+|||..
T Consensus 306 A~gGTLfLdeI~~Lp~-------------~~Q~~Ll~~L~~~~~~r~g~~--~~~~~dvRiIaat~~~ 358 (526)
T TIGR02329 306 AHRGTLFLDEIGEMPL-------------PLQTRLLRVLEEREVVRVGGT--EPVPVDVRVVAATHCA 358 (526)
T ss_pred cCCceEEecChHhCCH-------------HHHHHHHHHHhcCcEEecCCC--ceeeecceEEeccCCC
Confidence 3467899999997743 233556666654332233322 1223467899988764
No 229
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.04 E-value=6.5e-06 Score=89.01 Aligned_cols=127 Identities=13% Similarity=0.066 Sum_probs=72.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC----CcEEec------cc-----cc-----ccC--------CCCChHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMS------AG-----EL-----ESG--------NAGEPAKLIRQ 207 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~----~~i~vs------~s-----~l-----~s~--------~~Ge~~~~ir~ 207 (473)
.-..++|+||||+|||++++.++..+.- ..+.+. +. .+ .+. .+|.....-..
T Consensus 209 ~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG 288 (506)
T PRK09862 209 GGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPG 288 (506)
T ss_pred CCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccccCCcCCCCccCCCccchHHHHhCCCceehhh
Confidence 3468999999999999999999976421 111111 00 00 000 01110000001
Q ss_pred HHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcc-cCCCCcccCCCCCceEEEecCCC
Q 011983 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNV-QLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 208 ~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v-~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
.+. .....+|||||++.+- ..+...|++.+++.+.. .-.|. ......++.+|+|+|..
T Consensus 289 ~l~-------~A~gGvLfLDEi~e~~-------------~~~~~~L~~~LE~g~v~I~r~g~-~~~~pa~f~lIAa~NP~ 347 (506)
T PRK09862 289 EIS-------LAHNGVLFLDELPEFE-------------RRTLDALREPIESGQIHLSRTRA-KITYPARFQLVAAMNPS 347 (506)
T ss_pred Hhh-------hccCCEEecCCchhCC-------------HHHHHHHHHHHHcCcEEEecCCc-ceeccCCEEEEEeecCc
Confidence 222 3345799999997542 24556777766533211 11111 01234678899999875
Q ss_pred C---------------------CCccccccCCCceEEEec
Q 011983 287 S---------------------TLYAPLIRDGRMEKFYWA 305 (473)
Q Consensus 287 ~---------------------~Ld~aLlR~GRfd~~i~~ 305 (473)
. .|..+++. |||..+.+
T Consensus 348 pcG~~~~~~c~c~~~~~~~Y~~~ls~plLD--RfdL~v~v 385 (506)
T PRK09862 348 PTGHYQGNHNRCTPEQTLRYLNRLSGPFLD--RFDLSLEI 385 (506)
T ss_pred cceecCCCCCCcCHHHHHHHHhhCCHhHHh--hccEEEEe
Confidence 2 47889999 99999995
No 230
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.03 E-value=1.8e-05 Score=79.82 Aligned_cols=123 Identities=11% Similarity=0.019 Sum_probs=80.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE-----e---cccccccCC-CC----ChHHHHHHHHHHHHHHHHcCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-----M---SAGELESGN-AG----EPAKLIRQRYREAADIIKKGK 220 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~-----v---s~s~l~s~~-~G----e~~~~ir~~f~~A~~~~~~~~ 220 (473)
.+.|..+||+||+|+||+.+|.++|+.+-..--. + .-+++..-. .| -+...+|++-+++...-....
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 4789999999999999999999999985321000 0 001110000 11 123455555554421111355
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
..|++||++|.+-.. ..+.|+.+++ ++.+++.+|..|+.++.|.|.+++ |+-
T Consensus 96 ~kv~ii~~ad~mt~~-------------AaNaLLK~LE-------------EPp~~~~fiL~~~~~~~ll~TI~S--Rcq 147 (290)
T PRK05917 96 YKIYIIHEADRMTLD-------------AISAFLKVLE-------------DPPQHGVIILTSAKPQRLPPTIRS--RSL 147 (290)
T ss_pred ceEEEEechhhcCHH-------------HHHHHHHHhh-------------cCCCCeEEEEEeCChhhCcHHHHh--cce
Confidence 579999999977432 2366777676 667889999999999999999998 876
Q ss_pred EEEe
Q 011983 301 KFYW 304 (473)
Q Consensus 301 ~~i~ 304 (473)
.+.+
T Consensus 148 ~~~~ 151 (290)
T PRK05917 148 SIHI 151 (290)
T ss_pred EEEc
Confidence 6555
No 231
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=98.03 E-value=4e-07 Score=87.28 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=20.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..++||+||||||||++|+.+..-+
T Consensus 22 ~h~lLl~GppGtGKTmlA~~l~~lL 46 (206)
T PF01078_consen 22 GHHLLLIGPPGTGKTMLARRLPSLL 46 (206)
T ss_dssp C--EEEES-CCCTHHHHHHHHHHCS
T ss_pred CCCeEEECCCCCCHHHHHHHHHHhC
Confidence 3699999999999999999999874
No 232
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.03 E-value=3.6e-05 Score=75.42 Aligned_cols=140 Identities=16% Similarity=0.119 Sum_probs=82.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 236 (473)
..+-.++||.|||||..+|.+|+.+|..++..++++..+ ...+.++|.-+. ...+-+.|||++.+-..
T Consensus 32 ~~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~------~~~l~ril~G~~-----~~GaW~cfdefnrl~~~- 99 (231)
T PF12774_consen 32 NLGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMD------YQSLSRILKGLA-----QSGAWLCFDEFNRLSEE- 99 (231)
T ss_dssp TTEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-------HHHHHHHHHHHH-----HHT-EEEEETCCCSSHH-
T ss_pred CCCCCCcCCCCCCchhHHHHHHHHhCCeEEEeccccccc------HHHHHHHHHHHh-----hcCchhhhhhhhhhhHH-
Confidence 356778999999999999999999999999999987653 567777887653 34788999999977432
Q ss_pred CCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011983 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 311 (473)
Q Consensus 237 ~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 311 (473)
..++-.+.+......+..+...+.+.|.-. .-.+++-+.+|.| ....||+.|+. -|--+-. .||...-
T Consensus 100 ----vLS~i~~~i~~i~~al~~~~~~~~~~g~~i-~l~~~~~iFiT~np~y~gr~~LP~nLk~--lFRpvam~~PD~~~I 172 (231)
T PF12774_consen 100 ----VLSVISQQIQSIQDALRAKQKSFTLEGQEI-KLNPNCGIFITMNPGYAGRSELPENLKA--LFRPVAMMVPDLSLI 172 (231)
T ss_dssp ----HHHHHHHHHHHHHHHHHCTSSEEEETTCEE-E--TT-EEEEEE-B-CCCC--S-HHHCT--TEEEEE--S--HHHH
T ss_pred ----HHHHHHHHHHHHHHhhcccccccccCCCEE-EEccceeEEEeeccccCCcccCCHhHHH--HhheeEEeCCCHHHH
Confidence 112222233332233334444555555422 1234555666776 34578888877 4433333 5888776
Q ss_pred HHHH
Q 011983 312 IGVC 315 (473)
Q Consensus 312 ~~Il 315 (473)
.+++
T Consensus 173 ~ei~ 176 (231)
T PF12774_consen 173 AEIL 176 (231)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6654
No 233
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.00 E-value=4.8e-05 Score=83.50 Aligned_cols=138 Identities=21% Similarity=0.275 Sum_probs=89.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccccC----------CCCChH------HHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------NAGEPA------KLIRQRYRE 211 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s~----------~~Ge~~------~~ir~~f~~ 211 (473)
..+.+.|-||||||.++..+-+++ ...|+.+++-.|.+. +.|+.. ..+...|..
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 368899999999999999998864 357778888666531 122211 111112210
Q ss_pred HHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
.. ....++||+|||+|.++.+. | ..|.++.+ |......++.||+.+|..+....
T Consensus 503 ~k---~~~~~~VvLiDElD~Lvtr~----Q---------dVlYn~fd----------Wpt~~~sKLvvi~IaNTmdlPEr 556 (767)
T KOG1514|consen 503 PK---PKRSTTVVLIDELDILVTRS----Q---------DVLYNIFD----------WPTLKNSKLVVIAIANTMDLPER 556 (767)
T ss_pred CC---CCCCCEEEEeccHHHHhccc----H---------HHHHHHhc----------CCcCCCCceEEEEecccccCHHH
Confidence 00 15668999999999998763 2 44667777 88888899999998887663222
Q ss_pred cccc--CCCc--eEEEe-cCCHHHHHHHHHhhcCC
Q 011983 292 PLIR--DGRM--EKFYW-APTREDRIGVCSGIFRT 321 (473)
Q Consensus 292 aLlR--~GRf--d~~i~-~P~~eeR~~Il~~~l~~ 321 (473)
-|.. .-|+ .+.-+ ..+.++..+|+..-+..
T Consensus 557 ~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~ 591 (767)
T KOG1514|consen 557 LLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKG 591 (767)
T ss_pred HhccchhhhccceeeecCCCCHHHHHHHHHHhhcc
Confidence 2221 0133 33333 36899999999877765
No 234
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=97.99 E-value=3.5e-06 Score=88.27 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=85.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH----hCCCcEEecccccccCCC-----CC-------hHHHHHHHHHHHHHHHHcCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGNA-----GE-------PAKLIRQRYREAADIIKKGK 220 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~----lg~~~i~vs~s~l~s~~~-----Ge-------~~~~ir~~f~~A~~~~~~~~ 220 (473)
-..+|++|++||||+++|++|... ...+|+.++|+.+..... |- ....-..+|+ +..
T Consensus 101 ~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~~~eLFG~~kGaftGa~~~k~Glfe-------~A~ 173 (403)
T COG1221 101 GLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQEAELFGHEKGAFTGAQGGKAGLFE-------QAN 173 (403)
T ss_pred CCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHHHHHHhccccceeecccCCcCchhe-------ecC
Confidence 367999999999999999999755 356999999986653211 10 0011112333 344
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcccccc--C--
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIR--D-- 296 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR--~-- 296 (473)
...||+|||..+-. .++..|+.++++.+...+.+. .....+|.+|++||.. ++.+++. .
T Consensus 174 GGtLfLDEI~~LP~-------------~~Q~kLl~~le~g~~~rvG~~--~~~~~dVRli~AT~~~--l~~~~~~g~dl~ 236 (403)
T COG1221 174 GGTLFLDEIHRLPP-------------EGQEKLLRVLEEGEYRRVGGS--QPRPVDVRLICATTED--LEEAVLAGADLT 236 (403)
T ss_pred CCEEehhhhhhCCH-------------hHHHHHHHHHHcCceEecCCC--CCcCCCceeeeccccC--HHHHHHhhcchh
Confidence 77999999986643 244667788886666666653 4567889999988752 3333322 0
Q ss_pred -CCceEEEecCCHHHHH
Q 011983 297 -GRMEKFYWAPTREDRI 312 (473)
Q Consensus 297 -GRfd~~i~~P~~eeR~ 312 (473)
-|+...|.+|...+|.
T Consensus 237 ~rl~~~~I~LPpLrER~ 253 (403)
T COG1221 237 RRLNILTITLPPLRERK 253 (403)
T ss_pred hhhcCceecCCChhhch
Confidence 0445555678877773
No 235
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.98 E-value=5.2e-05 Score=72.21 Aligned_cols=82 Identities=15% Similarity=0.230 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC--------CCCC-----------hHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------NAGE-----------PAKLIRQRYR 210 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~--------~~Ge-----------~~~~ir~~f~ 210 (473)
|+..-..++++||||+|||++|..++.+ .|...++++..++... +.+. ....+...+.
T Consensus 8 Gi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~~~~~rl~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 87 (209)
T TIGR02237 8 GVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEGLSPERFKQIAEDRPERALSNFIVFEVFDFDEQGVAIQ 87 (209)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCCHHHHHHHHHhChHHHhcCEEEEECCCHHHHHHHHH
Confidence 5566688999999999999999998875 3556777776541100 0000 0001112233
Q ss_pred HHHHHHHcCCceEEEecCCCCccc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
...+++....+++|+||-+.++..
T Consensus 88 ~l~~~~~~~~~~lvVIDSis~l~~ 111 (209)
T TIGR02237 88 KTSKFIDRDSASLVVVDSFTALYR 111 (209)
T ss_pred HHHHHHhhcCccEEEEeCcHHHhH
Confidence 334445566899999999999864
No 236
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=97.94 E-value=5.4e-05 Score=80.36 Aligned_cols=159 Identities=16% Similarity=0.236 Sum_probs=88.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHHHH-----------HHHHHcCCc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREA-----------ADIIKKGKM 221 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~~A-----------~~~~~~~~p 221 (473)
...++|+|++||||+++|+++.... +.+|+.+++..+.. ..+. .+|... ...+.....
T Consensus 162 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 234 (445)
T TIGR02915 162 DITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPE-------NLLESELFGYEKGAFTGAVKQTLGKIEYAHG 234 (445)
T ss_pred CCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCCh-------HHHHHHhcCCCCCCcCCCccCCCCceeECCC
Confidence 3568899999999999999998875 35899999886631 2221 122210 001123456
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCccccc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 294 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~aLl 294 (473)
..|||||+|.+.. .++..|+.++++.....+++. .....++.||+||+.. ..+.+.|.
T Consensus 235 gtl~l~~i~~l~~-------------~~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 299 (445)
T TIGR02915 235 GTLFLDEIGDLPL-------------NLQAKLLRFLQERVIERLGGR--EEIPVDVRIVCATNQDLKRMIAEGTFREDLF 299 (445)
T ss_pred CEEEEechhhCCH-------------HHHHHHHHHHhhCeEEeCCCC--ceeeeceEEEEecCCCHHHHHHcCCccHHHH
Confidence 7899999998753 233455555553221112221 1223467899988764 22333333
Q ss_pred cCCCce-EEEecCCHHHHHH----HHHhhcCC---------CCCCHHHHHHHHhc-CCCC
Q 011983 295 RDGRME-KFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVDT-FPGQ 339 (473)
Q Consensus 295 R~GRfd-~~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~~-~sga 339 (473)
. |+. ..+.+|...+|.+ +++.++.. ..++.+.+..|... |+|.
T Consensus 300 ~--~l~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 300 Y--RIAEISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred H--HhccceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 2 333 2344787777754 33333321 24666666666543 3443
No 237
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.93 E-value=0.00013 Score=72.30 Aligned_cols=152 Identities=18% Similarity=0.134 Sum_probs=77.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH--hCCCc---EEeccccccc-------------CC-----CCChHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK--MGINP---IMMSAGELES-------------GN-----AGEPAKLIRQRYRE 211 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~--lg~~~---i~vs~s~l~s-------------~~-----~Ge~~~~ir~~f~~ 211 (473)
.....+.|+|++|+|||+||..+++. ..-.| +.++.+.-.+ .. .......+...+.+
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 67789999999999999999999988 43333 2233221110 00 01111112222222
Q ss_pred HHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 212 AADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
.. ..++++|+||+++... .+ ..+...+. ....+..||+||.......
T Consensus 97 ~L----~~~~~LlVlDdv~~~~--------------~~-~~l~~~~~-------------~~~~~~kilvTTR~~~v~~- 143 (287)
T PF00931_consen 97 LL----KDKRCLLVLDDVWDEE--------------DL-EELREPLP-------------SFSSGSKILVTTRDRSVAG- 143 (287)
T ss_dssp HH----CCTSEEEEEEEE-SHH--------------HH--------H-------------CHHSS-EEEEEESCGGGGT-
T ss_pred hh----ccccceeeeeeecccc--------------cc-cccccccc-------------ccccccccccccccccccc-
Confidence 22 5669999999987432 11 11111000 1134667899998754221
Q ss_pred ccccCCCceEEEec--CCHHHHHHHHHhhcCCCC-----CCHHHHHHHHhcCCCCchh
Q 011983 292 PLIRDGRMEKFYWA--PTREDRIGVCSGIFRTDN-----VPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 292 aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~~~~-----v~~~~l~~l~~~~sga~l~ 342 (473)
.+- .-...+.+ .+.++..++|+....... ...+...++++.+.|-.+.
T Consensus 144 ~~~---~~~~~~~l~~L~~~ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~glPLa 198 (287)
T PF00931_consen 144 SLG---GTDKVIELEPLSEEEALELFKKRAGRKESESPEDLEDLAKEIVEKCGGLPLA 198 (287)
T ss_dssp THH---SCEEEEECSS--HHHHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT-HHH
T ss_pred ccc---cccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 111 11445554 588899999997765422 1122344555555555543
No 238
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=97.92 E-value=0.00012 Score=74.35 Aligned_cols=130 Identities=9% Similarity=0.103 Sum_probs=82.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------------CcEEecccccccCCCCChHHHHHHHHHHHHHHH-HcCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------------NPIMMSAGELESGNAGEPAKLIRQRYREAADII-KKGK 220 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~-------------~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~-~~~~ 220 (473)
+.+...||+|+.|.||+.+++.+++.+-. .++.++.. .... .-..++++.+...-.. ..+.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~---g~~i--~vd~Ir~l~~~~~~~~~~~~~ 90 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIF---DKDL--SKSEFLSAINKLYFSSFVQSQ 90 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccC---CCcC--CHHHHHHHHHHhccCCcccCC
Confidence 67889999999999999999999999611 11222200 0001 1234444444332000 0246
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
..|++||++|.+.. ...+.|+..++ ++.+++.+|.+|+.++.|-+.+++ |..
T Consensus 91 ~KvvII~~~e~m~~-------------~a~NaLLK~LE-------------EPp~~t~~il~~~~~~kll~TI~S--Rc~ 142 (299)
T PRK07132 91 KKILIIKNIEKTSN-------------SLLNALLKTIE-------------EPPKDTYFLLTTKNINKVLPTIVS--RCQ 142 (299)
T ss_pred ceEEEEecccccCH-------------HHHHHHHHHhh-------------CCCCCeEEEEEeCChHhChHHHHh--CeE
Confidence 78999999876521 22346777665 667788888888888999999988 765
Q ss_pred EEEe-cCCHHHHHHHHHh
Q 011983 301 KFYW-APTREDRIGVCSG 317 (473)
Q Consensus 301 ~~i~-~P~~eeR~~Il~~ 317 (473)
.+-+ .|+.++-.+.+..
T Consensus 143 ~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 143 VFNVKEPDQQKILAKLLS 160 (299)
T ss_pred EEECCCCCHHHHHHHHHH
Confidence 5544 4667766665543
No 239
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.91 E-value=0.00012 Score=67.66 Aligned_cols=28 Identities=25% Similarity=0.317 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++.+.-+++.|+||+|||+++..++..+
T Consensus 2 ~~~~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 2 IKMAMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred CCcceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3557789999999999999999999885
No 240
>PRK15115 response regulator GlrR; Provisional
Probab=97.91 E-value=2.3e-05 Score=83.13 Aligned_cols=154 Identities=15% Similarity=0.248 Sum_probs=89.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHHHHH-----------HHHHcCCc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGKM 221 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~~A~-----------~~~~~~~p 221 (473)
...++|+|++|||||++|+++.+.. +.+|+.+++..+.. ..+. .+|..+. ..+.....
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~ 229 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPE-------QLLESELFGHARGAFTGAVSNREGLFQAAEG 229 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCcCCCCCCccCCCCcEEECCC
Confidence 3468999999999999999998884 46899999886632 1111 2222111 01123446
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc--
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM-- 299 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf-- 299 (473)
..|||||+|.+... ++..|+..+++.+...+.+. .....++.||+||+.. ++. +...|+|
T Consensus 230 gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~g~~--~~~~~~~rii~~~~~~--l~~-~~~~~~f~~ 291 (444)
T PRK15115 230 GTLFLDEIGDMPAP-------------LQVKLLRVLQERKVRPLGSN--RDIDIDVRIISATHRD--LPK-AMARGEFRE 291 (444)
T ss_pred CEEEEEccccCCHH-------------HHHHHHHHHhhCCEEeCCCC--ceeeeeEEEEEeCCCC--HHH-HHHcCCccH
Confidence 78999999987532 33455555553322222222 1223478899999863 333 3444666
Q ss_pred -------eEEEecCCHHHHHH----HHHhhcCC---------CCCCHHHHHHHHhc
Q 011983 300 -------EKFYWAPTREDRIG----VCSGIFRT---------DNVPKEDIVKLVDT 335 (473)
Q Consensus 300 -------d~~i~~P~~eeR~~----Il~~~l~~---------~~v~~~~l~~l~~~ 335 (473)
...|.+|...+|.+ |++.++.. ..++.+.+..|...
T Consensus 292 ~l~~~l~~~~i~lPpLr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~ 347 (444)
T PRK15115 292 DLYYRLNVVSLKIPALAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTA 347 (444)
T ss_pred HHHHhhceeeecCCChHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhC
Confidence 23444688777742 33333321 13566666666543
No 241
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=97.91 E-value=7.3e-05 Score=80.00 Aligned_cols=161 Identities=14% Similarity=0.208 Sum_probs=92.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHcCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKM 221 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p 221 (473)
....+|++|++|||||++|+++.... +.+|+.++++.+... ..-..+|.... ..+....+
T Consensus 160 ~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~------~~~~~lfg~~~g~~~~~~~~~~g~~~~a~~ 233 (469)
T PRK10923 160 SSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKD------LIESELFGHEKGAFTGANTIRQGRFEQADG 233 (469)
T ss_pred cCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHH------HHHHHhcCCCCCCCCCCCcCCCCCeeECCC
Confidence 34569999999999999999999985 468999999866321 11112222110 00113345
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCccccc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 294 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~aLl 294 (473)
..|||||+|.+... ++..|+.++++.+...+++. .....++.||+||+.. ..+.+.|.
T Consensus 234 Gtl~l~~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~ 298 (469)
T PRK10923 234 GTLFLDEIGDMPLD-------------VQTRLLRVLADGQFYRVGGY--APVKVDVRIIAATHQNLEQRVQEGKFREDLF 298 (469)
T ss_pred CEEEEeccccCCHH-------------HHHHHHHHHhcCcEEeCCCC--CeEEeeEEEEEeCCCCHHHHHHcCCchHHHH
Confidence 68999999987532 33456666654333333332 1223567899988763 23445555
Q ss_pred cCCCce-EEEecCCHHHHH----HHHHhhcCC---------CCCCHHHHHHHHh-cCCCC
Q 011983 295 RDGRME-KFYWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVD-TFPGQ 339 (473)
Q Consensus 295 R~GRfd-~~i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~-~~sga 339 (473)
. |+. ..|.+|...+|. .++..++.. ..++.+.+..|.. .|+|.
T Consensus 299 ~--~l~~~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 356 (469)
T PRK10923 299 H--RLNVIRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 (469)
T ss_pred H--HhcceeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCh
Confidence 5 553 445577655554 344444321 1356666666554 34444
No 242
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=97.89 E-value=2.8e-05 Score=69.56 Aligned_cols=60 Identities=20% Similarity=0.242 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC---CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~---~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
..-|||+|+|||||+++|++|....+. +|+.+++..+. .++++ ...+..|||+|+|.+.
T Consensus 21 ~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~-----------~~~l~-------~a~~gtL~l~~i~~L~ 82 (138)
T PF14532_consen 21 SSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP-----------AELLE-------QAKGGTLYLKNIDRLS 82 (138)
T ss_dssp SS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC-----------HHHHH-------HCTTSEEEEECGCCS-
T ss_pred CCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc-----------HHHHH-------HcCCCEEEECChHHCC
Confidence 445899999999999999999998653 55555555322 23444 3468899999999875
Q ss_pred c
Q 011983 234 G 234 (473)
Q Consensus 234 ~ 234 (473)
.
T Consensus 83 ~ 83 (138)
T PF14532_consen 83 P 83 (138)
T ss_dssp H
T ss_pred H
Confidence 3
No 243
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=97.88 E-value=3e-05 Score=88.38 Aligned_cols=156 Identities=15% Similarity=0.202 Sum_probs=102.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCC-------hHHHHHHHHHHH-HHHHHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE-------PAKLIRQRYREA-ADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge-------~~~~ir~~f~~A-~~~~~~~~p~ILfIDEiD 230 (473)
.+|++||||+|||+.+.++|+++|..++..+++...+++... ....|...|..- .........-||++||+|
T Consensus 359 ~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 359 ALLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHHhcCCCCCCchhhHhhhhhhcccceeecCccccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 479999999999999999999999999999999877654321 112222222000 000002223399999999
Q ss_pred Ccccc-CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccc-cccCCCceEEEecCCH
Q 011983 231 AGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAP-LIRDGRMEKFYWAPTR 308 (473)
Q Consensus 231 al~~~-r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~a-LlR~GRfd~~i~~P~~ 308 (473)
.++.. |+ ....|..++. ...++||+|+|+.+....- +.+.+ ++..|.-|+.
T Consensus 439 ~~~~~dRg-----------~v~~l~~l~~---------------ks~~Piv~~cndr~~p~sr~~~~~~-~~l~f~kP~~ 491 (871)
T KOG1968|consen 439 GMFGEDRG-----------GVSKLSSLCK---------------KSSRPLVCTCNDRNLPKSRALSRAC-SDLRFSKPSS 491 (871)
T ss_pred cccchhhh-----------hHHHHHHHHH---------------hccCCeEEEecCCCCccccchhhhc-ceeeecCCcH
Confidence 88762 22 2233333333 4677899999998876653 33322 6666667999
Q ss_pred HHHHHHHHhhcCCC--CCCHHHHHHHHhcCCCCchh
Q 011983 309 EDRIGVCSGIFRTD--NVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 309 eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sga~l~ 342 (473)
+.+..-+..++..+ .++.+.+.+++... +.++.
T Consensus 492 ~~i~~ri~si~~se~~ki~~~~l~~~s~~~-~~DiR 526 (871)
T KOG1968|consen 492 ELIRSRIMSICKSEGIKISDDVLEEISKLS-GGDIR 526 (871)
T ss_pred HHHHhhhhhhhcccceecCcHHHHHHHHhc-ccCHH
Confidence 99988888777664 46666777777664 44443
No 244
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.87 E-value=0.00011 Score=78.86 Aligned_cols=35 Identities=29% Similarity=0.285 Sum_probs=31.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
..+.+||+||+|||||+.++.+++++|+.++..+.
T Consensus 109 ~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~N 143 (634)
T KOG1970|consen 109 GSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSN 143 (634)
T ss_pred CceEEEEeCCCCCCchhHHHHHHHhhCceeeeecC
Confidence 45789999999999999999999999999888663
No 245
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.86 E-value=0.00012 Score=68.01 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=25.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 190 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~ 190 (473)
.+|++||||||||+++..++.+ .|.+.++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 3789999999999999988775 3556666654
No 246
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=97.86 E-value=6.5e-05 Score=71.30 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+...++||||.|+|||+|++.+.+..
T Consensus 19 ~~~~~~l~G~rg~GKTsLl~~~~~~~ 44 (234)
T PF01637_consen 19 PSQHILLYGPRGSGKTSLLKEFINEL 44 (234)
T ss_dssp -SSEEEEEESTTSSHHHHHHHHHHHC
T ss_pred cCcEEEEEcCCcCCHHHHHHHHHHHh
Confidence 45789999999999999999999987
No 247
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=97.86 E-value=1.3e-05 Score=82.46 Aligned_cols=138 Identities=18% Similarity=0.215 Sum_probs=72.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc-----c---------ccCCCCChHHHHHHHHHHHHHHHHcCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-----L---------ESGNAGEPAKLIRQRYREAADIIKKGK 220 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~-----l---------~s~~~Ge~~~~ir~~f~~A~~~~~~~~ 220 (473)
+...++||.|.||||||.|.+.+++-..... ++++.. | ..+|.-+.... . ...
T Consensus 55 r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v-~~~g~~~s~~gLta~~~~d~~~~~~~leaGal-----------v-lad 121 (331)
T PF00493_consen 55 RGNIHILLVGDPGTGKSQLLKYVAKLAPRSV-YTSGKGSSAAGLTASVSRDPVTGEWVLEAGAL-----------V-LAD 121 (331)
T ss_dssp --S--EEEECSCHHCHHHHHHCCCCT-SSEE-EEECCGSTCCCCCEEECCCGGTSSECEEE-HH-----------H-HCT
T ss_pred ccccceeeccchhhhHHHHHHHHHhhCCceE-EECCCCcccCCccceeccccccceeEEeCCch-----------h-ccc
Confidence 3456999999999999999998876543332 233221 1 11111111111 1 334
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCceEEEecCCCC------------
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRVPIIVTGNDFS------------ 287 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V~VIaTTN~~~------------ 287 (473)
..|++|||+|++-.. ....|.+.++..+ .+.-.|. ...-..+.-|++++|...
T Consensus 122 ~GiccIDe~dk~~~~-------------~~~~l~eaMEqq~isi~kagi-~~~l~ar~svlaa~NP~~g~~~~~~~~~~n 187 (331)
T PF00493_consen 122 GGICCIDEFDKMKED-------------DRDALHEAMEQQTISIAKAGI-VTTLNARCSVLAAANPKFGRYDPNKSLSEN 187 (331)
T ss_dssp TSEEEECTTTT--CH-------------HHHHHHHHHHCSCEEECTSSS-EEEEE---EEEEEE--TT--S-TTS-CGCC
T ss_pred Cceeeecccccccch-------------HHHHHHHHHHcCeeccchhhh-cccccchhhhHHHHhhhhhhcchhhhhHHh
Confidence 679999999987432 1245556555322 1111121 112245677999998665
Q ss_pred -CCccccccCCCceEEEec---CCHHHHHHHHHhhcCC
Q 011983 288 -TLYAPLIRDGRMEKFYWA---PTREDRIGVCSGIFRT 321 (473)
Q Consensus 288 -~Ld~aLlR~GRfd~~i~~---P~~eeR~~Il~~~l~~ 321 (473)
.++++|++ |||.++.+ |+.+.-..|.++++..
T Consensus 188 i~l~~~LLS--RFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 188 INLPPPLLS--RFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp T-S-CCCHC--C-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred cccchhhHh--hcCEEEEeccccccccccccceEEEec
Confidence 58999999 99999984 7777677776766654
No 248
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.84 E-value=5e-05 Score=81.29 Aligned_cols=79 Identities=20% Similarity=0.140 Sum_probs=52.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCC------CCC--------hHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN------AGE--------PAKLIRQRYREAADI 215 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~------~Ge--------~~~~ir~~f~~A~~~ 215 (473)
|+.+-..+||+|+||+|||+++..+|... +.++++++..+-.... .|. .+..+.+++ +.
T Consensus 76 Gi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~----~~ 151 (446)
T PRK11823 76 GLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAIL----AT 151 (446)
T ss_pred CccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHH----HH
Confidence 56666789999999999999999998874 5677777764322110 010 001122222 23
Q ss_pred HHcCCceEEEecCCCCcccc
Q 011983 216 IKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 216 ~~~~~p~ILfIDEiDal~~~ 235 (473)
++..+|.+|+||++..+...
T Consensus 152 i~~~~~~lVVIDSIq~l~~~ 171 (446)
T PRK11823 152 IEEEKPDLVVIDSIQTMYSP 171 (446)
T ss_pred HHhhCCCEEEEechhhhccc
Confidence 34678999999999988653
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.84 E-value=1.7e-05 Score=68.62 Aligned_cols=32 Identities=28% Similarity=0.391 Sum_probs=28.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
.|+|.||||+|||++|+.+|+.+|++++.++.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 37899999999999999999999987766553
No 250
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.82 E-value=0.0004 Score=73.48 Aligned_cols=155 Identities=15% Similarity=0.210 Sum_probs=96.3
Q ss_pred HHHHHHhhhcCC-CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEeccccccc--------------CCCCC
Q 011983 141 VVHITKNFLNLP-NVKVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELES--------------GNAGE 200 (473)
Q Consensus 141 ~~~i~k~~l~~~-~~~~p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s--------------~~~Ge 200 (473)
...++++|.... ..+.+..+.+.|-||||||.+..-+-.... ...+++++.+|.. ...+.
T Consensus 158 e~~~v~~F~~~hle~~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~kI~~~~~q~~~s~ 237 (529)
T KOG2227|consen 158 EMDIVREFFSLHLELNTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKKIFSSLLQDLVSP 237 (529)
T ss_pred HHHHHHHHHHhhhhcccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHHHHHHHHHHhcCC
Confidence 334555655432 346778899999999999999887766632 2335666654321 11111
Q ss_pred -hHHHHHHHHHHHHHHHHcC-CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCce
Q 011983 201 -PAKLIRQRYREAADIIKKG-KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVP 278 (473)
Q Consensus 201 -~~~~ir~~f~~A~~~~~~~-~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~ 278 (473)
++....+.|.+ ..... .|-||++||+|.++.+.. ..|..+.. |......+++
T Consensus 238 ~~~~~~~~~~~~---h~~q~k~~~llVlDEmD~L~tr~~-------------~vLy~lFe----------wp~lp~sr~i 291 (529)
T KOG2227|consen 238 GTGMQHLEKFEK---HTKQSKFMLLLVLDEMDHLITRSQ-------------TVLYTLFE----------WPKLPNSRII 291 (529)
T ss_pred chhHHHHHHHHH---HHhcccceEEEEechhhHHhhccc-------------ceeeeehh----------cccCCcceee
Confidence 11222222221 22233 488999999999985432 23444444 7777889999
Q ss_pred EEEecCCCCCCccccccCCCceE-----EEe--cCCHHHHHHHHHhhcCCC
Q 011983 279 IIVTGNDFSTLYAPLIRDGRMEK-----FYW--APTREDRIGVCSGIFRTD 322 (473)
Q Consensus 279 VIaTTN~~~~Ld~aLlR~GRfd~-----~i~--~P~~eeR~~Il~~~l~~~ 322 (473)
+|+.+|..+.-|..|-|- +.|. .+. ..+.++..+||+.-+...
T Consensus 292 LiGiANslDlTdR~LprL-~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~ 341 (529)
T KOG2227|consen 292 LIGIANSLDLTDRFLPRL-NLDLTIKPKLLVFPPYTKDQIVEILQQRLSEE 341 (529)
T ss_pred eeeehhhhhHHHHHhhhh-hhccCCCCceeeecCCCHHHHHHHHHHHHhcc
Confidence 999999988777666441 1222 222 359999999999777653
No 251
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.81 E-value=7e-05 Score=77.63 Aligned_cols=57 Identities=16% Similarity=0.103 Sum_probs=41.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC-------CcEEecc----cccccCCCCChHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSA----GELESGNAGEPAKLIRQRYRE 211 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~-------~~i~vs~----s~l~s~~~Ge~~~~ir~~f~~ 211 (473)
...++++|+||||+|||++|++|++.++. +++.+.+ +.+.....+--...+|..|.+
T Consensus 76 ~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~~~~~sp~~e~Pl~l~p~~~r~~~~~ 143 (361)
T smart00763 76 ERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKWNGEESPMHEDPLHLFPDELREDLED 143 (361)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEecCCCCCCccCCcccCCHHHHHHHHH
Confidence 34588999999999999999999999987 8888888 433333333334445555543
No 252
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.79 E-value=0.00011 Score=75.41 Aligned_cols=107 Identities=17% Similarity=0.249 Sum_probs=62.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-EEecccccc-------cCCCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-IMMSAGELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-i~vs~s~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 225 (473)
..+|+|+.||||-|+|||+|.-..+..+..+- ..+....++ ....|++. - +..-|.++ ...-.||.
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~FM~~vH~~l~~l~g~~d-p---l~~iA~~~--~~~~~vLC 135 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRFMARVHQRLHTLQGQTD-P---LPPIADEL--AAETRVLC 135 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHHHHHHHHHHHHHcCCCC-c---cHHHHHHH--HhcCCEEE
Confidence 35789999999999999999999999865422 111111111 00112220 0 01111111 23345999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CCCCcc
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FSTLYA 291 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~~Ld~ 291 (473)
|||+.. .++.+.++...|++-+= ..+|.+++|+|. |+.|++
T Consensus 136 fDEF~V----------tDI~DAMiL~rL~~~Lf---------------~~GV~lvaTSN~~P~~LY~ 177 (367)
T COG1485 136 FDEFEV----------TDIADAMILGRLLEALF---------------ARGVVLVATSNTAPDNLYK 177 (367)
T ss_pred eeeeee----------cChHHHHHHHHHHHHHH---------------HCCcEEEEeCCCChHHhcc
Confidence 999862 23445677766665433 368899999996 344433
No 253
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.79 E-value=4.9e-05 Score=79.54 Aligned_cols=76 Identities=12% Similarity=0.130 Sum_probs=51.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC-----CcE-Eecccc---------------cccCCCCChHHHHH---HHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGI-----NPI-MMSAGE---------------LESGNAGEPAKLIR---QRYREAAD 214 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~-----~~i-~vs~s~---------------l~s~~~Ge~~~~ir---~~f~~A~~ 214 (473)
-.||+||||+|||+|++.|++.... ..+ .+.... +.+.+-..+...++ .++..|..
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~~~~~~~~~a~~~ie~Ae~ 250 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDEPAERHVQVAEMVIEKAKR 250 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 3677799999999999999998643 222 222221 23444445555555 45556665
Q ss_pred HHHcCCceEEEecCCCCccc
Q 011983 215 IIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~ 234 (473)
....++..+||||||..+..
T Consensus 251 ~~e~G~dVlL~iDsItR~ar 270 (416)
T PRK09376 251 LVEHGKDVVILLDSITRLAR 270 (416)
T ss_pred HHHcCCCEEEEEEChHHHHH
Confidence 55578899999999998864
No 254
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=97.77 E-value=0.00014 Score=72.31 Aligned_cols=122 Identities=7% Similarity=-0.079 Sum_probs=77.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc--------------cccccCC-CC--ChHHHHHHHHHHHHHHH-
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA--------------GELESGN-AG--EPAKLIRQRYREAADII- 216 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~--------------s~l~s~~-~G--e~~~~ir~~f~~A~~~~- 216 (473)
.+|..+||+||+|+||..+|.++|+.+-..--.-.+ +++.--+ .+ -....+|++-+......
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 578999999999999999999999884211000001 1111000 00 12234444443322000
Q ss_pred HcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccC
Q 011983 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~ 296 (473)
..+...|++|+++|.+-. ...+.|+.+++ ++.+++.+|.+|+.++.|.|.+++
T Consensus 85 e~~~~KV~II~~ae~m~~-------------~AaNaLLK~LE-------------EPp~~t~fiLit~~~~~lLpTI~S- 137 (261)
T PRK05818 85 ESNGKKIYIIYGIEKLNK-------------QSANSLLKLIE-------------EPPKNTYGIFTTRNENNILNTILS- 137 (261)
T ss_pred hcCCCEEEEeccHhhhCH-------------HHHHHHHHhhc-------------CCCCCeEEEEEECChHhCchHhhh-
Confidence 123468999999997642 23356777666 678899999999999999999999
Q ss_pred CCceEEEe
Q 011983 297 GRMEKFYW 304 (473)
Q Consensus 297 GRfd~~i~ 304 (473)
|.-....
T Consensus 138 -RCq~~~~ 144 (261)
T PRK05818 138 -RCVQYVV 144 (261)
T ss_pred -heeeeec
Confidence 8755443
No 255
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=97.76 E-value=0.00026 Score=71.69 Aligned_cols=133 Identities=13% Similarity=0.129 Sum_probs=83.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc-------E------Eec---ccccccCC-CCC--hHHHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP-------I------MMS---AGELESGN-AGE--PAKLIRQRYREAAD 214 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~-------i------~vs---~s~l~s~~-~Ge--~~~~ir~~f~~A~~ 214 (473)
.+.|..+||+|| +||+.+|+.+|+.+-..- - .+. -+++.--. .|. .-..||++.+.+..
T Consensus 21 ~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~~ 98 (290)
T PRK07276 21 DRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFSQ 98 (290)
T ss_pred CCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHhh
Confidence 378999999996 689999999999852210 0 000 01111000 111 23456665554431
Q ss_pred HHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccc
Q 011983 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLl 294 (473)
.-......|++||++|.+... ..+.|+..++ ++.+++.+|.+|+.++.|-|.++
T Consensus 99 ~p~~~~~kV~II~~ad~m~~~-------------AaNaLLKtLE-------------EPp~~t~~iL~t~~~~~lLpTI~ 152 (290)
T PRK07276 99 SGYEGKQQVFIIKDADKMHVN-------------AANSLLKVIE-------------EPQSEIYIFLLTNDENKVLPTIK 152 (290)
T ss_pred CcccCCcEEEEeehhhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEECChhhCchHHH
Confidence 111345579999999977432 2356777666 66778899999999999999999
Q ss_pred cCCCceEEEecCCHHHHHHHHH
Q 011983 295 RDGRMEKFYWAPTREDRIGVCS 316 (473)
Q Consensus 295 R~GRfd~~i~~P~~eeR~~Il~ 316 (473)
+ |.-.+.+.|+.++-.+++.
T Consensus 153 S--Rcq~i~f~~~~~~~~~~L~ 172 (290)
T PRK07276 153 S--RTQIFHFPKNEAYLIQLLE 172 (290)
T ss_pred H--cceeeeCCCcHHHHHHHHH
Confidence 9 8866665555555445443
No 256
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=97.75 E-value=9.6e-05 Score=78.61 Aligned_cols=132 Identities=16% Similarity=0.220 Sum_probs=76.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHH-----------HHHHcCCce
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAA-----------DIIKKGKMC 222 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----------~~~~~~~p~ 222 (473)
...+|++|++||||+++|+++.... +.+|+.+++..+... ..-..+|.... ..+......
T Consensus 166 ~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~------~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~g 239 (457)
T PRK11361 166 QASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPES------LLESELFGHEKGAFTGAQTLRQGLFERANEG 239 (457)
T ss_pred CcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHH------HHHHHhcCCCCCCCCCCCCCCCCceEECCCC
Confidence 4569999999999999999998774 468999998866321 11111222100 011133467
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceE-
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 301 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~- 301 (473)
+|||||+|.+... +...|+.++++.+...+++. .....++.||+|||..- ..+.+.|+|..
T Consensus 240 tl~ld~i~~l~~~-------------~q~~L~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~l---~~~~~~g~~~~~ 301 (457)
T PRK11361 240 TLLLDEIGEMPLV-------------LQAKLLRILQEREFERIGGH--QTIKVDIRIIAATNRDL---QAMVKEGTFRED 301 (457)
T ss_pred EEEEechhhCCHH-------------HHHHHHHHHhcCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCchHH
Confidence 8999999987532 33556666553222222221 12234688999998631 13344455533
Q ss_pred --------EEecCCHHHHH
Q 011983 302 --------FYWAPTREDRI 312 (473)
Q Consensus 302 --------~i~~P~~eeR~ 312 (473)
.+.+|...+|.
T Consensus 302 l~~~l~~~~i~~ppLreR~ 320 (457)
T PRK11361 302 LFYRLNVIHLILPPLRDRR 320 (457)
T ss_pred HHHHhccceecCCChhhch
Confidence 23357666663
No 257
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.75 E-value=3.1e-05 Score=70.77 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=30.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.+|..|+|+||||||||++|+.+|+.+|.+++..+
T Consensus 2 ~~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~d 36 (175)
T PRK00131 2 LKGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDTD 36 (175)
T ss_pred CCCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 35678999999999999999999999999887533
No 258
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.74 E-value=4.1e-05 Score=67.96 Aligned_cols=33 Identities=24% Similarity=0.460 Sum_probs=26.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
++++||||+|||++|+.+++.++. ..++...+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~--~~i~~D~~~ 34 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGA--VVISQDEIR 34 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTE--EEEEHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHCCC--EEEeHHHHH
Confidence 789999999999999999999994 445544443
No 259
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=9.7e-05 Score=68.64 Aligned_cols=52 Identities=19% Similarity=0.104 Sum_probs=36.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
-|++.||||+|||++|+.|++.++.+++.++.--....|...+...+..+.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~~~~~~~~~~~~ 54 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEGVPKEEQITVQN 54 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcCCCHHHHHHHHH
Confidence 4889999999999999999999999988776432222344444333333333
No 260
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.73 E-value=0.00024 Score=74.41 Aligned_cols=79 Identities=19% Similarity=0.138 Sum_probs=50.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC------CCCC--------hHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE--------PAKLIRQRYREAADI 215 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~------~~Ge--------~~~~ir~~f~~A~~~ 215 (473)
|+.+-..+||+|+||+|||+++..+|... +-+.++++..+-... ..|. .+..+..+++ .
T Consensus 78 Gi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~----~ 153 (372)
T cd01121 78 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILA----S 153 (372)
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHH----H
Confidence 45666789999999999999999998764 346667765432110 0010 0111222333 3
Q ss_pred HHcCCceEEEecCCCCcccc
Q 011983 216 IKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 216 ~~~~~p~ILfIDEiDal~~~ 235 (473)
++..+|.+|+||+|..+...
T Consensus 154 i~~~~~~lVVIDSIq~l~~~ 173 (372)
T cd01121 154 IEELKPDLVIIDSIQTVYSS 173 (372)
T ss_pred HHhcCCcEEEEcchHHhhcc
Confidence 34778999999999988643
No 261
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.72 E-value=0.00012 Score=71.12 Aligned_cols=81 Identities=17% Similarity=0.188 Sum_probs=53.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC--------------C---------------CCC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG--------------N---------------AGE 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~--------------~---------------~Ge 200 (473)
|+.....++++||||+|||+++..++.+ .|-..++++..+-... + ...
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~~~~~~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 100 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENTSKSYLKQMESVKIDISDFFLWGYLRIFPLNTEGFEW 100 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCCHHHHHHHHHHCCCChhHHHhCCCceEEecccccccc
Confidence 6777889999999999999999999765 3555555554221100 0 000
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
......+++......++...|.+|+||++-.+.
T Consensus 101 ~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~ 133 (234)
T PRK06067 101 NSTLANKLLELIIEFIKSKREDVIIIDSLTIFA 133 (234)
T ss_pred CcchHHHHHHHHHHHHHhcCCCEEEEecHHHHH
Confidence 112234556666666667789999999998764
No 262
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.71 E-value=5.1e-05 Score=73.79 Aligned_cols=76 Identities=18% Similarity=0.265 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc-cccC---------CCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE-LESG---------NAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~-l~s~---------~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
+.|..+||||+||+|||++|+.++.. .-++..+.+. ...+ ....+-..+.+.+.... ........|
T Consensus 10 ~~~~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~--~~~~~ydtV 85 (220)
T TIGR01618 10 RIPNMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQN--IQAVKYDNI 85 (220)
T ss_pred CCCcEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHH--hccccCCEE
Confidence 34777999999999999999999732 2222222211 0010 01111122223332111 013557899
Q ss_pred EecCCCCccc
Q 011983 225 FINDLDAGAG 234 (473)
Q Consensus 225 fIDEiDal~~ 234 (473)
+||.++.+..
T Consensus 86 VIDsI~~l~~ 95 (220)
T TIGR01618 86 VIDNISALQN 95 (220)
T ss_pred EEecHHHHHH
Confidence 9999998754
No 263
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.70 E-value=8.2e-05 Score=71.79 Aligned_cols=82 Identities=20% Similarity=0.230 Sum_probs=50.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC----CCCC-hHH--------------HHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE-PAK--------------LIRQRYR 210 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~----~~Ge-~~~--------------~ir~~f~ 210 (473)
|+..-..++++||||+|||++|..+|.+ .+.+.++++...+... ..+. ..+ .+....+
T Consensus 19 Gi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 98 (225)
T PRK09361 19 GFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTEGLSPERFKQIAGEDFEELLSNIIIFEPSSFEEQSEAIR 98 (225)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCHHHHHHHHhhChHhHhhCeEEEeCCCHHHHHHHHH
Confidence 5666678999999999999999999875 3667777776521100 0000 000 1111222
Q ss_pred HHHHHHHcCCceEEEecCCCCcccc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
....+++ .++.+|+||.+.+++..
T Consensus 99 ~~~~~~~-~~~~lvVIDsi~al~~~ 122 (225)
T PRK09361 99 KAEKLAK-ENVGLIVLDSATSLYRL 122 (225)
T ss_pred HHHHHHH-hcccEEEEeCcHHHhHH
Confidence 2222222 68999999999988643
No 264
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=97.69 E-value=7.1e-05 Score=79.89 Aligned_cols=122 Identities=16% Similarity=0.172 Sum_probs=75.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccc-----cCCCCChH-------HHHHHHHHHHHHHHHcC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE-----SGNAGEPA-------KLIRQRYREAADIIKKG 219 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~-----s~~~Ge~~-------~~ir~~f~~A~~~~~~~ 219 (473)
.....|||+|++||||-++|++|-+... -+|+.++|+.+- +..+|... ..-...|+ ..
T Consensus 162 ~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE-------~A 234 (464)
T COG2204 162 PSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFE-------QA 234 (464)
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCccee-------Ec
Confidence 3456799999999999999999988864 499999997553 22222110 00012344 34
Q ss_pred CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCc
Q 011983 220 KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRM 299 (473)
Q Consensus 220 ~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRf 299 (473)
....||||||..+-- .++.-|+..+.+.+--.+.|. +.-.-+|.||+|||+. |. .....|||
T Consensus 235 ~GGTLfLDEI~~mpl-------------~~Q~kLLRvLqe~~~~rvG~~--~~i~vdvRiIaaT~~d--L~-~~v~~G~F 296 (464)
T COG2204 235 NGGTLFLDEIGEMPL-------------ELQVKLLRVLQEREFERVGGN--KPIKVDVRIIAATNRD--LE-EEVAAGRF 296 (464)
T ss_pred CCceEEeeccccCCH-------------HHHHHHHHHHHcCeeEecCCC--cccceeeEEEeecCcC--HH-HHHHcCCc
Confidence 477999999986632 233445555554444444443 2334678999999974 22 23445666
Q ss_pred eE
Q 011983 300 EK 301 (473)
Q Consensus 300 d~ 301 (473)
-.
T Consensus 297 Re 298 (464)
T COG2204 297 RE 298 (464)
T ss_pred HH
Confidence 43
No 265
>PRK07261 topology modulation protein; Provisional
Probab=97.68 E-value=0.00011 Score=68.34 Aligned_cols=42 Identities=14% Similarity=0.140 Sum_probs=32.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGE 200 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge 200 (473)
-|++.|+||+|||++|+.+++.++.+++.++.-.....|...
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~~~ 43 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQER 43 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccccC
Confidence 378999999999999999999999988877654333334433
No 266
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.65 E-value=0.00013 Score=67.11 Aligned_cols=38 Identities=18% Similarity=0.249 Sum_probs=23.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC---cEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~---~i~vs~ 190 (473)
....+..++|+|++|+|||++.+.+...+... ++.+.+
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~ 60 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINC 60 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEE
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEE
Confidence 44667999999999999999999888875332 444444
No 267
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.63 E-value=0.00015 Score=71.91 Aligned_cols=79 Identities=13% Similarity=0.139 Sum_probs=49.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCC------cEEeccc------c----c-----ccCCCCChHHHHH---HHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG------E----L-----ESGNAGEPAKLIR---QRYRE 211 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~------~i~vs~s------~----l-----~s~~~Ge~~~~ir---~~f~~ 211 (473)
..--++|.||+|+|||++++.+++..... ++.+... + + .+.+-..+...++ .+...
T Consensus 15 ~Gqr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~ 94 (249)
T cd01128 15 KGQRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEK 94 (249)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHH
Confidence 34568888999999999999999987542 2222221 0 1 2222222333222 44555
Q ss_pred HHHHHHcCCceEEEecCCCCccc
Q 011983 212 AADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
|......++..+|||||+..+..
T Consensus 95 a~~~~~~G~~vll~iDei~r~a~ 117 (249)
T cd01128 95 AKRLVEHGKDVVILLDSITRLAR 117 (249)
T ss_pred HHHHHHCCCCEEEEEECHHHhhh
Confidence 55444467899999999998754
No 268
>PHA02624 large T antigen; Provisional
Probab=97.63 E-value=0.00043 Score=75.82 Aligned_cols=138 Identities=16% Similarity=0.111 Sum_probs=77.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+++.-+.+|||||||||||+++.+|++.+|-..+.++++.-.+ -|.-.- ...-.+.+||++-.-
T Consensus 427 giPKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks------------~FwL~p----l~D~~~~l~dD~t~~ 490 (647)
T PHA02624 427 NVPKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKL------------NFELGC----AIDQFMVVFEDVKGQ 490 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchh------------HHHhhh----hhhceEEEeeecccc
Confidence 4455569999999999999999999999955556666442211 111000 112347888988643
Q ss_pred cccCCCCCccchhhHHHH--HHHHHhhcCCCcccCCCC-cccCCCCCceEEEecCCCCCCccccccCCCceEEEec-CCH
Q 011983 233 AGRMGGTTQYTVNNQMVN--ATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWA-PTR 308 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~--~~Ll~lld~~~~v~l~g~-~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~-P~~ 308 (473)
.-.... -...+-+. ..|.+.+|-.-.|.++-. .......--|.|+|||.. .||..|.- ||-+.+.+ |..
T Consensus 491 ~~~~~~----Lp~G~~~dNl~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ney-~iP~T~~~--Rf~~~~~F~~k~ 563 (647)
T PHA02624 491 PADNKD----LPSGQGMNNLDNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNEY-LIPQTVKA--RFAKVLDFKPKP 563 (647)
T ss_pred cccccc----CCcccccchhhHHHhhcCCCCccccchhccCchhccCCCeEEeecCc-ccchhHHH--HHHHhccccccH
Confidence 321100 00001111 335555552213444421 011122335788999984 58888888 89888874 554
Q ss_pred HHHHH
Q 011983 309 EDRIG 313 (473)
Q Consensus 309 eeR~~ 313 (473)
--+..
T Consensus 564 ~l~~s 568 (647)
T PHA02624 564 YLKKS 568 (647)
T ss_pred HHHHH
Confidence 44443
No 269
>PHA02774 E1; Provisional
Probab=97.63 E-value=0.00042 Score=75.62 Aligned_cols=110 Identities=17% Similarity=0.170 Sum_probs=62.5
Q ss_pred HHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE-ecccccccCCCCChHHHHHHHHHHHHHHHHcCCc
Q 011983 143 HITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM-MSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221 (473)
Q Consensus 143 ~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~-vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p 221 (473)
...|++++ ++..-..++||||||||||++|.+|++.++-..+. ++...-+ | ++.+ ..-
T Consensus 422 ~~lk~~l~--~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~F--w-----------Lqpl------~d~ 480 (613)
T PHA02774 422 TALKDFLK--GIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSHF--W-----------LQPL------ADA 480 (613)
T ss_pred HHHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcccc--c-----------cchh------ccC
Confidence 34455542 33333589999999999999999999998644433 4432111 0 1211 112
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcc-cCCCCCceEEEecCCC
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN-QEENPRVPIIVTGNDF 286 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~-~~~~~~V~VIaTTN~~ 286 (473)
.|++|||+-.-+ -.-+...|.++++. ..|.+|-.-. ......-|+|+|||--
T Consensus 481 ki~vlDD~t~~~------------w~y~d~~Lrn~LdG-~~v~lD~Khk~~~q~k~pPlIITSN~d 533 (613)
T PHA02774 481 KIALLDDATHPC------------WDYIDTYLRNALDG-NPVSIDCKHKAPVQIKCPPLLITSNID 533 (613)
T ss_pred CEEEEecCcchH------------HHHHHHHHHHHcCC-CcceeeecccCcccccCCCEEEecCCC
Confidence 489999982110 01233456777762 3455442211 1234567899999943
No 270
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.62 E-value=8e-05 Score=70.67 Aligned_cols=121 Identities=17% Similarity=0.065 Sum_probs=57.0
Q ss_pred EEEEEcCCCCcHHHHHHHH-HHH---hCCCcEEeccccccc----CCCCChHH--HH----------HHHHHHHHHHHHc
Q 011983 159 ILGIWGGKGQGKSFQCELV-FAK---MGINPIMMSAGELES----GNAGEPAK--LI----------RQRYREAADIIKK 218 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaI-A~~---lg~~~i~vs~s~l~s----~~~Ge~~~--~i----------r~~f~~A~~~~~~ 218 (473)
+.+++|.||+|||+.|-.. ... .|.+++. +...|.- ...+.... .+ ...+..- ...
T Consensus 2 I~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~ 77 (193)
T PF05707_consen 2 IYLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDW---RKL 77 (193)
T ss_dssp EEEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHH---TTS
T ss_pred EEEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhh---ccc
Confidence 5789999999999987555 433 3555443 3322211 11111000 00 0011111 001
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCC
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGR 298 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GR 298 (473)
...++|+|||+...++.+.... ......+ ..|.. -.-.+.-||++|.++..||+.+++ .
T Consensus 78 ~~~~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~----------------hRh~g~diiliTQ~~~~id~~ir~--l 136 (193)
T PF05707_consen 78 PKGSLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQ----------------HRHYGWDIILITQSPSQIDKFIRD--L 136 (193)
T ss_dssp GTT-EEEETTGGGTSB---T-T------HHH-HGGGG----------------CCCTT-EEEEEES-GGGB-HHHHC--C
T ss_pred CCCcEEEEECChhhcCCCcccc--ccchHHH-HHHHH----------------hCcCCcEEEEEeCCHHHHhHHHHH--H
Confidence 2689999999999998765310 1111222 22211 223567899999999999999987 8
Q ss_pred ceEEEe
Q 011983 299 MEKFYW 304 (473)
Q Consensus 299 fd~~i~ 304 (473)
.+..+.
T Consensus 137 ve~~~~ 142 (193)
T PF05707_consen 137 VEYHYH 142 (193)
T ss_dssp EEEEEE
T ss_pred HheEEE
Confidence 887776
No 271
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.60 E-value=2.8e-05 Score=72.47 Aligned_cols=23 Identities=26% Similarity=0.276 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++|.|+||+||||+++.+++++
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 37999999999999999999997
No 272
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=0.0002 Score=65.80 Aligned_cols=41 Identities=17% Similarity=0.073 Sum_probs=32.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCCh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~ 201 (473)
.|+|.|+||||||++++.+|+.+|++|+..+. +.....|.+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d~--~~~~~~g~~ 43 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTDK--EIEKMTGMT 43 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECch--hhhhhcCCc
Confidence 48899999999999999999999999876543 343434443
No 273
>PRK13695 putative NTPase; Provisional
Probab=97.58 E-value=0.0003 Score=65.32 Aligned_cols=23 Identities=26% Similarity=0.312 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++|.|+||+|||++++.+++.+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999988774
No 274
>PRK06762 hypothetical protein; Provisional
Probab=97.56 E-value=0.00013 Score=66.98 Aligned_cols=38 Identities=18% Similarity=0.374 Sum_probs=32.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|..++|+|+||+|||++|+.+++.++..++.++...+.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r 39 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVR 39 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHH
Confidence 67899999999999999999999997666666665554
No 275
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.56 E-value=0.00044 Score=70.96 Aligned_cols=83 Identities=16% Similarity=0.206 Sum_probs=53.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC----CCCC--------hHHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGE--------PAKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~----~~Ge--------~~~~ir~~f~~A~~~~~ 217 (473)
|...-..++||||||+|||+||-.++.+ .|-..++++..+..+. ..|- ......+.+..+..+++
T Consensus 51 Glp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li~ 130 (321)
T TIGR02012 51 GLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLVR 130 (321)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHhh
Confidence 5666678999999999999998877665 3556666655332110 0010 00112233444444556
Q ss_pred cCCceEEEecCCCCcccc
Q 011983 218 KGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~~ 235 (473)
...+.+|+||-+-++.++
T Consensus 131 ~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 131 SGAVDIIVVDSVAALVPK 148 (321)
T ss_pred ccCCcEEEEcchhhhccc
Confidence 788999999999998764
No 276
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=97.55 E-value=0.00059 Score=65.46 Aligned_cols=39 Identities=15% Similarity=0.233 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
|+.....++++|+||+|||++|..+|.+. |.+.++++..
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 15 GVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 56667789999999999999999999774 4566666543
No 277
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=97.55 E-value=4.1e-05 Score=81.66 Aligned_cols=155 Identities=14% Similarity=0.186 Sum_probs=85.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHH-------HH----HHHHHcCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYR-------EA----ADIIKKGK 220 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~-------~A----~~~~~~~~ 220 (473)
....+++.|.+||||+++|+++.... +.+|+.+++..+.. ..+. .+|. .+ ...+....
T Consensus 156 ~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 228 (463)
T TIGR01818 156 SDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPK-------DLIESELFGHEKGAFTGANTRRQGRFEQAD 228 (463)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCH-------HHHHHHhcCCCCCCCCCcccCCCCcEEECC
Confidence 34578999999999999999998874 46899999876632 1111 1111 00 00111344
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------CCcccc
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------TLYAPL 293 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-------~Ld~aL 293 (473)
+..|||||+|.+... +...|++++++.+...+++. .....++.||+||+..- .+.+.|
T Consensus 229 ~gtl~l~ei~~l~~~-------------~q~~ll~~l~~~~~~~~~~~--~~~~~~~rii~~~~~~l~~~~~~~~f~~~L 293 (463)
T TIGR01818 229 GGTLFLDEIGDMPLD-------------AQTRLLRVLADGEFYRVGGR--TPIKVDVRIVAATHQNLEALVRQGKFREDL 293 (463)
T ss_pred CCeEEEEchhhCCHH-------------HHHHHHHHHhcCcEEECCCC--ceeeeeeEEEEeCCCCHHHHHHcCCcHHHH
Confidence 678999999987432 23445555553221122221 12234678899887541 222233
Q ss_pred ccCCCceE-EEecCCHHHHH----HHHHhhcCC---------CCCCHHHHHHHHh
Q 011983 294 IRDGRMEK-FYWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVD 334 (473)
Q Consensus 294 lR~GRfd~-~i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~ 334 (473)
.. |+.. .|.+|...+|. .++..++.. ..++.+.+..|..
T Consensus 294 ~~--rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~ 346 (463)
T TIGR01818 294 FH--RLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQ 346 (463)
T ss_pred HH--HhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHh
Confidence 33 3332 45577655553 334433321 2456666666554
No 278
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.52 E-value=0.00021 Score=66.40 Aligned_cols=34 Identities=18% Similarity=0.167 Sum_probs=28.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s 191 (473)
+.|+|.||||+|||++|+.+++.++..++.++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D 36 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVD 36 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCcc
Confidence 5799999999999999999999988776655443
No 279
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.52 E-value=0.00056 Score=70.24 Aligned_cols=83 Identities=16% Similarity=0.196 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC----CCCCh-H-------HHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP-A-------KLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~----~~Ge~-~-------~~ir~~f~~A~~~~~ 217 (473)
|+..-..+++|||||+|||+||-.++.+ .|-..++++..+-.+. ..|.. . ....+.+..+..+++
T Consensus 51 Glp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li~ 130 (325)
T cd00983 51 GYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLVR 130 (325)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHHh
Confidence 5566678999999999999999988755 4666676665321110 00100 0 011223444444556
Q ss_pred cCCceEEEecCCCCcccc
Q 011983 218 KGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~~ 235 (473)
...+.+|+||-+-++.++
T Consensus 131 s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 131 SGAVDLIVVDSVAALVPK 148 (325)
T ss_pred ccCCCEEEEcchHhhccc
Confidence 788999999999999864
No 280
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=97.49 E-value=0.00011 Score=73.48 Aligned_cols=56 Identities=18% Similarity=0.218 Sum_probs=46.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
-+.+||.||||||||.||-+|++++| .+|.-+.++++.+.-+-.++- +-+-|++|.
T Consensus 64 GravLlaGppgtGKTAlAlaisqELG~kvPFcpmvgSEvyS~EvKKTEv-LmenfRRaI 121 (456)
T KOG1942|consen 64 GRAVLLAGPPGTGKTALALAISQELGPKVPFCPMVGSEVYSNEVKKTEV-LMENFRRAI 121 (456)
T ss_pred CcEEEEecCCCCchhHHHHHHHHHhCCCCCcccccchhhhhhhhhHHHH-HHHHHHHHh
Confidence 37899999999999999999999986 689999999998876666654 346677775
No 281
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.48 E-value=0.00048 Score=66.60 Aligned_cols=82 Identities=15% Similarity=0.186 Sum_probs=51.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEecccccccC-CC-------C---------------C
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG-NA-------G---------------E 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s~-~~-------G---------------e 200 (473)
|+..-..+.|+||||+|||++|..++... +...++++..+-... .. + .
T Consensus 15 Gi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (235)
T cd01123 15 GIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERLVQIAERFGLDPEEVLDNIYVARAY 94 (235)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHHHHHHHHhccChHhHhcCEEEEecC
Confidence 56677889999999999999999998552 245666665431110 00 0 0
Q ss_pred hHHHHHHHHHHHHHHHHcC-CceEEEecCCCCccc
Q 011983 201 PAKLIRQRYREAADIIKKG-KMCCLFINDLDAGAG 234 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~-~p~ILfIDEiDal~~ 234 (473)
....+...+......+... ++.+|+||-+.++..
T Consensus 95 ~~~~l~~~l~~l~~~l~~~~~~~liVIDSis~~~~ 129 (235)
T cd01123 95 NSDHQLQLLEELEAILIESSRIKLVIVDSVTALFR 129 (235)
T ss_pred CHHHHHHHHHHHHHHHhhcCCeeEEEEeCcHHHHH
Confidence 0112223334444445566 899999999998753
No 282
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=97.48 E-value=0.00051 Score=72.67 Aligned_cols=132 Identities=14% Similarity=0.190 Sum_probs=76.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH-HHHHHHH-----------HHHHcCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-QRYREAA-----------DIIKKGK 220 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-~~f~~A~-----------~~~~~~~ 220 (473)
....++++|.+||||+++|+++.... +.+|+.++++.+.. ..+. .+|.... ..+....
T Consensus 161 ~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~-------~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~ 233 (441)
T PRK10365 161 SEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNE-------SLLESELFGHEKGAFTGADKRREGRFVEAD 233 (441)
T ss_pred CCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCH-------HHHHHHhcCCCCCCcCCCCcCCCCceeECC
Confidence 34678999999999999999998764 46899999986531 2221 1222110 0111345
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCce
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRME 300 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd 300 (473)
+..|||||||.+... +...|+..+++.+...+.+. .....++.+|+||+..- ..+..+|+|.
T Consensus 234 ~gtl~ldei~~l~~~-------------~q~~l~~~l~~~~~~~~~~~--~~~~~~~rii~~t~~~~---~~~~~~~~~~ 295 (441)
T PRK10365 234 GGTLFLDEIGDISPM-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDL---AAEVNAGRFR 295 (441)
T ss_pred CCEEEEeccccCCHH-------------HHHHHHHHHccCcEEeCCCC--ceeeeceEEEEeCCCCH---HHHHHcCCch
Confidence 788999999987542 22445555553221111111 11234567888886632 2344556663
Q ss_pred ---------EEEecCCHHHHH
Q 011983 301 ---------KFYWAPTREDRI 312 (473)
Q Consensus 301 ---------~~i~~P~~eeR~ 312 (473)
..+.+|...+|.
T Consensus 296 ~~l~~~l~~~~i~~ppLreR~ 316 (441)
T PRK10365 296 QDLYYRLNVVAIEVPSLRQRR 316 (441)
T ss_pred HHHHHHhccceecCCChhhcc
Confidence 344467766663
No 283
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.47 E-value=0.00025 Score=68.50 Aligned_cols=80 Identities=19% Similarity=0.157 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---h-CCCcEEecccccccC------CCC-----------------Ch----
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---M-GINPIMMSAGELESG------NAG-----------------EP---- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---l-g~~~i~vs~s~l~s~------~~G-----------------e~---- 201 (473)
|+.....+|+.||||+|||+++..++.+ . |-+.++++..+-... -.| .+
T Consensus 15 Gip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~ 94 (226)
T PF06745_consen 15 GIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIG 94 (226)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST
T ss_pred CCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEeccccccc
Confidence 5677889999999999999999987654 2 777777665221100 000 00
Q ss_pred --HHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 202 --AKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 202 --~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
...+..++....+.++..++.+++||-+..+
T Consensus 95 ~~~~~~~~l~~~i~~~i~~~~~~~vVIDsls~l 127 (226)
T PF06745_consen 95 WSPNDLEELLSKIREAIEELKPDRVVIDSLSAL 127 (226)
T ss_dssp -TSCCHHHHHHHHHHHHHHHTSSEEEEETHHHH
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEEECHHHH
Confidence 1122333344444445777899999999988
No 284
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.47 E-value=0.001 Score=65.13 Aligned_cols=81 Identities=16% Similarity=0.142 Sum_probs=52.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccc-----------------------------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE----------------------------------- 194 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~----------------------------------- 194 (473)
|..+...+|++||||+|||++|..++.+ .|-+.++++..+-.
T Consensus 17 G~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee~~~~i~~~~~~~g~~~~~~~~~g~l~~~d~~~~~~~~ 96 (237)
T TIGR03877 17 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEEHPVQVRRNMAQFGWDVRKYEEEGKFAIVDAFTGGIGE 96 (237)
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeCCHHHHHHHHHHhCCCHHHHhhcCCEEEEecccccccc
Confidence 5677789999999999999999876654 35566555542211
Q ss_pred ----cCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 195 ----SGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 195 ----s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
..|+-.....+..++....+.++..++.+|+||-+-.+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~vVIDSls~l~ 139 (237)
T TIGR03877 97 AAEREKYVVKDPTDVRELIDVLRQAIRDINAKRVVIDSVTTLY 139 (237)
T ss_pred ccccccccccCcccHHHHHHHHHHHHHHhCCCEEEEcChhHhh
Confidence 001101122344555555555567788899999998764
No 285
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.46 E-value=0.00089 Score=65.03 Aligned_cols=38 Identities=13% Similarity=0.091 Sum_probs=30.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||+++..++... |.++++++.
T Consensus 9 Gl~~G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 9 GLQPGDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 55666789999999999999998887763 777777664
No 286
>PRK03839 putative kinase; Provisional
Probab=97.45 E-value=0.00012 Score=68.21 Aligned_cols=31 Identities=29% Similarity=0.477 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|+|.|+||+|||++++.+|+.++++++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 4789999999999999999999999886644
No 287
>PRK04296 thymidine kinase; Provisional
Probab=97.43 E-value=0.001 Score=63.02 Aligned_cols=71 Identities=15% Similarity=0.236 Sum_probs=42.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc--cc------cccCCCCChH-----HHHHHHHHHHHHHHHcCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA--GE------LESGNAGEPA-----KLIRQRYREAADIIKKGKM 221 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~--s~------l~s~~~Ge~~-----~~ir~~f~~A~~~~~~~~p 221 (473)
...+++||||+|||+++..++..+ |..++.+.. .. +.+ ..|..- .....+++.+.+ ....+
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~-~lg~~~~~~~~~~~~~~~~~~~~--~~~~~ 79 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVS-RIGLSREAIPVSSDTDIFELIEE--EGEKI 79 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEec-CCCCcccceEeCChHHHHHHHHh--hCCCC
Confidence 468899999999999988888774 555555533 10 111 112110 122334444332 25678
Q ss_pred eEEEecCCCC
Q 011983 222 CCLFINDLDA 231 (473)
Q Consensus 222 ~ILfIDEiDa 231 (473)
.+|+|||+.-
T Consensus 80 dvviIDEaq~ 89 (190)
T PRK04296 80 DCVLIDEAQF 89 (190)
T ss_pred CEEEEEcccc
Confidence 8999999953
No 288
>PRK00625 shikimate kinase; Provisional
Probab=97.43 E-value=0.00014 Score=68.12 Aligned_cols=31 Identities=10% Similarity=-0.047 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|+|.|+||+|||++++.+|++++++|+.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4889999999999999999999999998776
No 289
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.42 E-value=0.00097 Score=61.73 Aligned_cols=116 Identities=13% Similarity=0.228 Sum_probs=70.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEE---ecccc-------------c--c---c--CCC-CCh---HHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIM---MSAGE-------------L--E---S--GNA-GEP---AKLIRQR 208 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~---vs~s~-------------l--~---s--~~~-Ge~---~~~ir~~ 208 (473)
.+.+|+++|.|||++|-.+|-. .|..+.. +.+.. + . . .+. .+. ....++.
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 4678999999999999988876 3444443 33320 0 0 0 000 111 2345567
Q ss_pred HHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC
Q 011983 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288 (473)
Q Consensus 209 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~ 288 (473)
|+.|.+.+......+|+|||+-...... -.....+. ++++ ....+.=||+|++.
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~g------li~~~~v~----~ll~-------------~rp~~~evIlTGr~--- 137 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYG------LLDVEEVV----DLLK-------------AKPEDLELVLTGRN--- 137 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCC------CCCHHHHH----HHHH-------------cCCCCCEEEEECCC---
Confidence 8888888888899999999998665431 11122333 3333 34566779999987
Q ss_pred CccccccCCCceEE
Q 011983 289 LYAPLIRDGRMEKF 302 (473)
Q Consensus 289 Ld~aLlR~GRfd~~ 302 (473)
.++.|+. +.|.+
T Consensus 138 ~p~~l~e--~AD~V 149 (159)
T cd00561 138 APKELIE--AADLV 149 (159)
T ss_pred CCHHHHH--hCcee
Confidence 3556655 44443
No 290
>PLN02200 adenylate kinase family protein
Probab=97.42 E-value=0.00016 Score=70.94 Aligned_cols=40 Identities=40% Similarity=0.705 Sum_probs=33.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
+.+.|..++|.||||+|||++|+.+|+++|+. .++.+++.
T Consensus 39 ~~~~~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdll 78 (234)
T PLN02200 39 KEKTPFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLL 78 (234)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHH
Confidence 45678899999999999999999999999864 56666554
No 291
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.41 E-value=0.00056 Score=61.51 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
++|+|+||+|||++|+.+++.++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 7899999999999999999998876553
No 292
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=97.40 E-value=0.00012 Score=77.89 Aligned_cols=166 Identities=19% Similarity=0.281 Sum_probs=94.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccc-----cCCCCChHHHHHHHHHHHHH----HHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE-----SGNAGEPAKLIRQRYREAAD----IIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~-----s~~~Ge~~~~ir~~f~~A~~----~~~~~~p~ 222 (473)
+....|||.|..||||-.+|++|=+.. .-+|+.++|..+- |..+|. .+..|.-|.. ..+-....
T Consensus 244 ~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlESELFGH----eKGAFTGA~~~r~GrFElAdGG 319 (550)
T COG3604 244 KSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLESELFGH----EKGAFTGAINTRRGRFELADGG 319 (550)
T ss_pred cCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHHHHhcc----cccccccchhccCcceeecCCC
Confidence 456789999999999999999998875 4599999996543 223332 2223333320 00022356
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceE-
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 301 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~- 301 (473)
-||+|||..+-- .++.-|+..+.+.+--.+.|. ....-+|.||++||+- |.. ..+.|+|-.
T Consensus 320 TLFLDEIGelPL-------------~lQaKLLRvLQegEieRvG~~--r~ikVDVRiIAATNRD--L~~-~V~~G~FRaD 381 (550)
T COG3604 320 TLFLDEIGELPL-------------ALQAKLLRVLQEGEIERVGGD--RTIKVDVRVIAATNRD--LEE-MVRDGEFRAD 381 (550)
T ss_pred eEechhhccCCH-------------HHHHHHHHHHhhcceeecCCC--ceeEEEEEEEeccchh--HHH-HHHcCcchhh
Confidence 899999976632 233445554543333334433 1234568899999983 333 345577633
Q ss_pred -EEe-------cCCHHHHH---HHHHhhc-C---------CCCCCHHHHHHHHh-cCCCCchh
Q 011983 302 -FYW-------APTREDRI---GVCSGIF-R---------TDNVPKEDIVKLVD-TFPGQSID 342 (473)
Q Consensus 302 -~i~-------~P~~eeR~---~Il~~~l-~---------~~~v~~~~l~~l~~-~~sga~l~ 342 (473)
.|. +|-.-+|. -+|-.+| . ...++.+.+..+.. .|+|..-+
T Consensus 382 LYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~wPGNVRE 444 (550)
T COG3604 382 LYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEWPGNVRE 444 (550)
T ss_pred hhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCCCCcHHH
Confidence 322 35544442 2222222 2 13456667777765 45555433
No 293
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.39 E-value=0.00016 Score=64.92 Aligned_cols=30 Identities=20% Similarity=0.315 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
|+|+||||+|||++|+.+|+.+|++++..+
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 789999999999999999999999887544
No 294
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.39 E-value=0.00036 Score=66.48 Aligned_cols=67 Identities=13% Similarity=0.217 Sum_probs=40.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCC----cEEeccc-ccc---------cCCCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAG-ELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~----~i~vs~s-~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
.+++.||+|+|||+++++++..+..+ .+.+... ++. ...+|.....+...++.+. ...|.+|
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~~~~~~i~t~e~~~E~~~~~~~~~i~q~~vg~~~~~~~~~i~~aL----r~~pd~i 78 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINKNKTHHILTIEDPIEFVHESKRSLINQREVGLDTLSFENALKAAL----RQDPDVI 78 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhhcCCcEEEEEcCCccccccCccceeeecccCCCccCHHHHHHHHh----cCCcCEE
Confidence 47899999999999999999886422 1222111 111 0112222222233333333 7789999
Q ss_pred EecCC
Q 011983 225 FINDL 229 (473)
Q Consensus 225 fIDEi 229 (473)
++||+
T Consensus 79 i~gEi 83 (198)
T cd01131 79 LVGEM 83 (198)
T ss_pred EEcCC
Confidence 99997
No 295
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=97.38 E-value=0.0016 Score=70.07 Aligned_cols=82 Identities=16% Similarity=0.154 Sum_probs=50.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC------CCCChHHHHH----HHHHHHHHHHHcC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGEPAKLIR----QRYREAADIIKKG 219 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~------~~Ge~~~~ir----~~f~~A~~~~~~~ 219 (473)
|+.+-..+||+|+||+|||+++..++... +-+.++++..+-... ..|-....+. .-+......++..
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 56666789999999999999999997764 346677776432210 0111000000 0012222333477
Q ss_pred CceEEEecCCCCccc
Q 011983 220 KMCCLFINDLDAGAG 234 (473)
Q Consensus 220 ~p~ILfIDEiDal~~ 234 (473)
+|.+|+||.|-.+..
T Consensus 170 ~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 NPQACVIDSIQTLYS 184 (454)
T ss_pred CCcEEEEecchhhcc
Confidence 899999999988754
No 296
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.38 E-value=0.00087 Score=65.51 Aligned_cols=38 Identities=18% Similarity=0.185 Sum_probs=27.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~ 190 (473)
++.....+++.||||||||++|..++.. -|...++++.
T Consensus 20 gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 20 GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 3555678999999999999998655553 2556666554
No 297
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.35 E-value=0.00053 Score=62.64 Aligned_cols=28 Identities=25% Similarity=0.318 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
++|.||||+|||++|+.+++.++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 4688999999999999999999866543
No 298
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.35 E-value=0.00018 Score=66.94 Aligned_cols=33 Identities=36% Similarity=0.684 Sum_probs=27.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|+|.||||+|||++|+.+|+++|+ ..++.+++.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~--~~is~~d~l 34 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGF--THLSAGDLL 34 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCC--eEEECChHH
Confidence 789999999999999999999986 445555444
No 299
>PRK14531 adenylate kinase; Provisional
Probab=97.34 E-value=0.00022 Score=66.93 Aligned_cols=30 Identities=27% Similarity=0.306 Sum_probs=26.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..|+++||||+|||++++.+|+.+|+.++.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is 32 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS 32 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe
Confidence 458999999999999999999999877654
No 300
>PRK08233 hypothetical protein; Provisional
Probab=97.34 E-value=0.00082 Score=62.02 Aligned_cols=32 Identities=22% Similarity=0.237 Sum_probs=26.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-CCcEEe
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG-INPIMM 188 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg-~~~i~v 188 (473)
+..|.+.|+||+||||+|+.|+..++ ..++.+
T Consensus 3 ~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~ 35 (182)
T PRK08233 3 TKIITIAAVSGGGKTTLTERLTHKLKNSKALYF 35 (182)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhCCCCceEEE
Confidence 56788999999999999999999986 333333
No 301
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=97.34 E-value=0.00024 Score=77.90 Aligned_cols=135 Identities=19% Similarity=0.252 Sum_probs=70.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHH-----HHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKL-----IRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~-----ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
.--.|||+|-||||||-+.+.+++-+..-.+ .++- .+.-+|.+.-. -+++.-+.-.+. -....|-.|||+|
T Consensus 461 ~~INILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGk--GsSavGLTayVtrd~dtkqlVLesGALV-LSD~GiCCIDEFD 536 (804)
T KOG0478|consen 461 GDINILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGK--GSSAVGLTAYVTKDPDTRQLVLESGALV-LSDNGICCIDEFD 536 (804)
T ss_pred ccceEEEecCCCcCHHHHHHHHHHhCCccee-ecCC--ccchhcceeeEEecCccceeeeecCcEE-EcCCceEEchhhh
Confidence 3468999999999999999999998644322 2211 01111211100 011111111000 2223456689999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------------CCccccccCC
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRDG 297 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-------------~Ld~aLlR~G 297 (473)
++-.. ++ ++-.+.+.+.-+.+.. -|. ...-+.+.-||+++|... .|+|.|++
T Consensus 537 KM~dS----tr-SvLhEvMEQQTvSIAK-------AGI-I~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLS-- 601 (804)
T KOG0478|consen 537 KMSDS----TR-SVLHEVMEQQTLSIAK-------AGI-IASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLS-- 601 (804)
T ss_pred hhhHH----HH-HHHHHHHHHhhhhHhh-------cce-eeeccccceeeeeeccccccCCCCCchhhccCCChhhhh--
Confidence 88322 11 1111111111111111 122 123356677999998432 48999999
Q ss_pred CceEEEec---CCHH
Q 011983 298 RMEKFYWA---PTRE 309 (473)
Q Consensus 298 Rfd~~i~~---P~~e 309 (473)
|||.+|.+ |++.
T Consensus 602 RFDLIylllD~~DE~ 616 (804)
T KOG0478|consen 602 RFDLIFLLLDKPDER 616 (804)
T ss_pred hhcEEEEEecCcchh
Confidence 99999984 5554
No 302
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.33 E-value=0.00016 Score=65.89 Aligned_cols=32 Identities=31% Similarity=0.319 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..||++|-||||||++|+.||..+|+.+|.|+
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 35899999999999999999999999988766
No 303
>PRK14532 adenylate kinase; Provisional
Probab=97.33 E-value=0.0002 Score=67.09 Aligned_cols=34 Identities=24% Similarity=0.403 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
.|+|.||||+|||++|+.+|++.|+.+ ++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~--is~~d~l 35 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQ--LSTGDML 35 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeE--EeCcHHH
Confidence 478999999999999999999998755 4544443
No 304
>PRK13948 shikimate kinase; Provisional
Probab=97.32 E-value=0.00044 Score=65.37 Aligned_cols=35 Identities=17% Similarity=0.005 Sum_probs=32.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
++|..|+|.|++|+|||++++.+|+.+|.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 56789999999999999999999999999998665
No 305
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.32 E-value=0.0015 Score=62.54 Aligned_cols=23 Identities=22% Similarity=-0.005 Sum_probs=21.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..++|.||.|+|||++.+.|+..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 68899999999999999999854
No 306
>PRK06696 uridine kinase; Validated
Probab=97.31 E-value=0.00053 Score=66.40 Aligned_cols=41 Identities=22% Similarity=0.269 Sum_probs=34.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 194 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~ 194 (473)
...|..|++.|++|+|||++|+.|+..+ |.+++.++..++.
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3578999999999999999999999998 6677776665554
No 307
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.30 E-value=0.0021 Score=63.97 Aligned_cols=81 Identities=16% Similarity=0.130 Sum_probs=52.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEeccccccc----------CCCCC---------------h---
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELES----------GNAGE---------------P--- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s----------~~~Ge---------------~--- 201 (473)
|+.+...+|++||||||||++|-.++.+ .|-+.++++..+-.. ...|- +
T Consensus 32 Gip~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~Ee~~~~~~~~l~~~a~~~g~d~~~~~~~l~~id~~~~~~ 111 (259)
T TIGR03878 32 GIPAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVESPANFVYTSLKERAKAMGVDFDKIEENIILIDAASSTE 111 (259)
T ss_pred CeECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCchHHHHHHHHHHHHcCCCHHHHhCCEEEEECCCchh
Confidence 5667789999999999999999988765 355666655431100 00000 0
Q ss_pred -HHHHHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 202 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 202 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
...+..++......+++.++.+|+||-+-++.
T Consensus 112 ~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~ 144 (259)
T TIGR03878 112 LRENVPNLLATLAYAIKEYKVKNTVIDSITGLY 144 (259)
T ss_pred hhhhHHHHHHHHHHHHHhhCCCEEEEcCchHhc
Confidence 02344455555556667889999999987664
No 308
>PRK09354 recA recombinase A; Provisional
Probab=97.30 E-value=0.00077 Score=69.83 Aligned_cols=82 Identities=16% Similarity=0.212 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC-------------CCCChHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG-------------NAGEPAKLIRQRYREAADII 216 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~-------------~~Ge~~~~ir~~f~~A~~~~ 216 (473)
|+..-..++||||||||||+||-.++.+ .|-..++++..+-... ++-++ ....+.+..+..++
T Consensus 56 Gip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp-~~~Eq~l~i~~~li 134 (349)
T PRK09354 56 GLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQP-DTGEQALEIADTLV 134 (349)
T ss_pred CCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecC-CCHHHHHHHHHHHh
Confidence 5566678999999999999999887654 4656666665431110 00000 11223344454556
Q ss_pred HcCCceEEEecCCCCcccc
Q 011983 217 KKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~ 235 (473)
+...+.+|+||-+-++.++
T Consensus 135 ~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hcCCCCEEEEeChhhhcch
Confidence 6788999999999998763
No 309
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.30 E-value=0.0017 Score=62.47 Aligned_cols=83 Identities=16% Similarity=0.197 Sum_probs=49.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---C------CCcEEecccccccC-C-------CC---------------C
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---G------INPIMMSAGELESG-N-------AG---------------E 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g------~~~i~vs~s~l~s~-~-------~G---------------e 200 (473)
|+..-..+.|+||||+|||++|..+|... + ...++++...-... . .+ .
T Consensus 15 G~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~~~~~~~~~~~~~~~~~i~~~~~~ 94 (226)
T cd01393 15 GIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLVQLAVRFGLDPEEVLDNIYVARPY 94 (226)
T ss_pred CCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHHHHHHHhccchhhhhccEEEEeCC
Confidence 56666789999999999999999998763 2 45566665432110 0 00 0
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
....+...++..........+.+|+||-+..+...
T Consensus 95 ~~~~~~~~l~~~~~~~~~~~~~lvVIDsis~l~~~ 129 (226)
T cd01393 95 NGEQQLEIVEELERIMSSGRVDLVVVDSVAALFRK 129 (226)
T ss_pred CHHHHHHHHHHHHHHhhcCCeeEEEEcCcchhhhh
Confidence 01111222222222222567899999999988653
No 310
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.28 E-value=0.0012 Score=72.93 Aligned_cols=69 Identities=19% Similarity=0.116 Sum_probs=51.6
Q ss_pred cccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC----CcEEeccccccc
Q 011983 126 TLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSAGELES 195 (473)
Q Consensus 126 ~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~----~~i~vs~s~l~s 195 (473)
+..+..+|+.|+-..+..++..+... ..+.+..|+|+|+||+|||++|++++..++. +++.++...+..
T Consensus 362 l~~G~~pP~~f~rpeV~~iL~~~~~~-r~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~ 434 (568)
T PRK05537 362 LREGLEIPEWFSFPEVVAELRRTYPP-RHKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRK 434 (568)
T ss_pred HHCCCCCChhhcHHHHHHHHHHHhcc-ccCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHH
Confidence 45677778888877777777665433 3467788999999999999999999999875 345666655543
No 311
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.28 E-value=0.00072 Score=61.50 Aligned_cols=34 Identities=21% Similarity=0.273 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
++|+|+||+|||++|+.++..+ +.+.+.++...+
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~ 38 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNV 38 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHH
Confidence 7899999999999999999998 666666665444
No 312
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.27 E-value=0.0003 Score=68.89 Aligned_cols=38 Identities=29% Similarity=0.471 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
..|.-|+|.||||+|||++|+.+|+.+|++++ +.+++.
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~i--s~gdll 41 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHI--NMGNIL 41 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEE--ECChHH
Confidence 45666889999999999999999999987665 444443
No 313
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=97.27 E-value=0.0002 Score=79.74 Aligned_cols=144 Identities=18% Similarity=0.222 Sum_probs=81.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHH-----HHHHHHHHcCCceEEEecCCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRY-----REAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f-----~~A~~~~~~~~p~ILfIDEiDa 231 (473)
=.++||.|-||||||.|.+.+++-+...++. ++. .+.-+|-++..++.-. -+|- .+--..+.|..|||+|+
T Consensus 319 DInILLvGDPgtaKSqlLk~v~~~aPr~vyt-sgk--gss~~GLTAav~rd~~tge~~LeaG-ALVlAD~Gv~cIDEfdK 394 (682)
T COG1241 319 DIHILLVGDPGTAKSQLLKYVAKLAPRGVYT-SGK--GSSAAGLTAAVVRDKVTGEWVLEAG-ALVLADGGVCCIDEFDK 394 (682)
T ss_pred ceeEEEcCCCchhHHHHHHHHHhhCCceEEE-ccc--cccccCceeEEEEccCCCeEEEeCC-EEEEecCCEEEEEeccC
Confidence 3689999999999999999999987654432 111 1122233332222222 1111 01134467899999997
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCC-cccCCCCCceEEEecCCCC-------------CCccccccCC
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-YNQEENPRVPIIVTGNDFS-------------TLYAPLIRDG 297 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~-~~~~~~~~V~VIaTTN~~~-------------~Ld~aLlR~G 297 (473)
+-... . ..+.+.|+ -+.+++... ....-..+.-|++|+|... .|+++|++
T Consensus 395 m~~~d----r---------~aihEaME-QQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLS-- 458 (682)
T COG1241 395 MNEED----R---------VAIHEAME-QQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLS-- 458 (682)
T ss_pred CChHH----H---------HHHHHHHH-hcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHh--
Confidence 74321 0 12222222 111222211 1122346677888888654 58999999
Q ss_pred CceEEEec---CCHHHHHHHHHhhcC
Q 011983 298 RMEKFYWA---PTREDRIGVCSGIFR 320 (473)
Q Consensus 298 Rfd~~i~~---P~~eeR~~Il~~~l~ 320 (473)
|||.++.+ |+.+.-..|..+++.
T Consensus 459 RFDLifvl~D~~d~~~D~~ia~hil~ 484 (682)
T COG1241 459 RFDLIFVLKDDPDEEKDEEIAEHILD 484 (682)
T ss_pred hCCeeEEecCCCCccchHHHHHHHHH
Confidence 99999984 776655555554443
No 314
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=97.26 E-value=0.00077 Score=67.76 Aligned_cols=36 Identities=25% Similarity=0.184 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l 193 (473)
+..++|.||||+|||++|+.+++++. .++.++...+
T Consensus 2 ~~liil~G~pGSGKSTla~~L~~~~~-~~~~l~~D~~ 37 (300)
T PHA02530 2 MKIILTVGVPGSGKSTWAREFAAKNP-KAVNVNRDDL 37 (300)
T ss_pred cEEEEEEcCCCCCHHHHHHHHHHHCC-CCEEEeccHH
Confidence 56789999999999999999999983 3345555444
No 315
>PRK13946 shikimate kinase; Provisional
Probab=97.25 E-value=0.00061 Score=64.01 Aligned_cols=35 Identities=17% Similarity=0.098 Sum_probs=30.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
.++.|+|.|+||+|||++++.+|+.+|++|+..+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D~ 43 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFLDADT 43 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeECcCH
Confidence 34679999999999999999999999999886653
No 316
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.25 E-value=0.00025 Score=62.92 Aligned_cols=30 Identities=30% Similarity=0.419 Sum_probs=27.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
|.+.|+||+|||++|+.+|+.++++++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 789999999999999999999999987665
No 317
>PRK14527 adenylate kinase; Provisional
Probab=97.24 E-value=0.0003 Score=66.34 Aligned_cols=32 Identities=22% Similarity=0.368 Sum_probs=28.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
+.|..++++||||+|||++|+.+|+++++..+
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~i 35 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKL 35 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCC
Confidence 45788999999999999999999999987554
No 318
>PRK13949 shikimate kinase; Provisional
Probab=97.23 E-value=0.00029 Score=65.59 Aligned_cols=31 Identities=19% Similarity=0.240 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|+|.||||+|||++++.+|+.++++++..+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 5889999999999999999999999887755
No 319
>PRK06547 hypothetical protein; Provisional
Probab=97.23 E-value=0.00035 Score=65.41 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..|..|++.|++|+|||++|+.+++.++..++.+
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 5688999999999999999999999998876644
No 320
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.23 E-value=0.00079 Score=70.84 Aligned_cols=77 Identities=14% Similarity=0.149 Sum_probs=48.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCC------cEEeccc--------------ccccCCCCChHHH-H---HHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGIN------PIMMSAG--------------ELESGNAGEPAKL-I---RQRYREAA 213 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~------~i~vs~s--------------~l~s~~~Ge~~~~-i---r~~f~~A~ 213 (473)
.-++|.||||+|||++++.|++....+ ++.+... .+...-.+++... + ..+...|.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 458999999999999999999985433 2222211 1111223333322 2 23444455
Q ss_pred HHHHcCCceEEEecCCCCccc
Q 011983 214 DIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 214 ~~~~~~~p~ILfIDEiDal~~ 234 (473)
.....++..||||||+..+..
T Consensus 249 ~~~~~GkdVVLlIDEitR~ar 269 (415)
T TIGR00767 249 RLVEHKKDVVILLDSITRLAR 269 (415)
T ss_pred HHHHcCCCeEEEEEChhHHHH
Confidence 444578899999999998754
No 321
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.23 E-value=0.00028 Score=65.94 Aligned_cols=33 Identities=36% Similarity=0.517 Sum_probs=27.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|+|.||||+|||++|+.||+.+|+.++ +.+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i--~~~~l~ 34 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHI--STGDLL 34 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEE--ECcHHH
Confidence 789999999999999999999887654 444443
No 322
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.22 E-value=0.0035 Score=60.60 Aligned_cols=23 Identities=35% Similarity=0.354 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
++.++|+||.|+|||++.+.++.
T Consensus 29 ~~~~~itGpNg~GKStlLk~i~~ 51 (213)
T cd03281 29 PSIMVITGPNSSGKSVYLKQVAL 51 (213)
T ss_pred ceEEEEECCCCCChHHHHHHHHH
Confidence 58899999999999999999983
No 323
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.20 E-value=0.0033 Score=59.11 Aligned_cols=27 Identities=19% Similarity=0.233 Sum_probs=22.7
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+...+.|.||.|+|||+|.+++...
T Consensus 18 i~~G~~~~l~G~nG~GKSTLl~~il~~ 44 (176)
T cd03238 18 IPLNVLVVVTGVSGSGKSTLVNEGLYA 44 (176)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhhc
Confidence 355567899999999999999999754
No 324
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.19 E-value=0.00035 Score=65.76 Aligned_cols=34 Identities=24% Similarity=0.300 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
-|+|.||||+||||+|+.|++.+ ++..++.+.+.
T Consensus 2 riiilG~pGaGK~T~A~~La~~~--~i~hlstgd~~ 35 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL--GLPHLDTGDIL 35 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh--CCcEEcHhHHh
Confidence 47888999999999999999995 44566655444
No 325
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=97.17 E-value=0.0015 Score=64.60 Aligned_cols=38 Identities=16% Similarity=0.172 Sum_probs=29.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
|..+-..++|.||||+|||+++..++... |.++++++.
T Consensus 26 G~~~g~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 26 GLRKGELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred EEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 44555688999999999999999887763 666666665
No 326
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.16 E-value=0.00087 Score=67.21 Aligned_cols=26 Identities=15% Similarity=-0.086 Sum_probs=23.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..+++|.||||+|||++.++++..+.
T Consensus 111 ~~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 111 VLNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eeEEEEEcCCCCCHHHHHHHHhCccC
Confidence 36899999999999999999999864
No 327
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.16 E-value=0.0019 Score=60.39 Aligned_cols=34 Identities=24% Similarity=0.395 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
.+|+.||||+|||++|..++.+.+.+.+++....
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~ 36 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQ 36 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCC
Confidence 5899999999999999999999887777766554
No 328
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=97.15 E-value=0.0002 Score=79.45 Aligned_cols=56 Identities=18% Similarity=0.188 Sum_probs=41.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCC----cEEecccc------cccCCCCChHHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGIN----PIMMSAGE------LESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~----~i~vs~s~------l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
.+++|+||||||||++|+++++.++.+ ++.+..+. +..-+.|..++.++..|..|+
T Consensus 38 ~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~~~~~~~~~~~v~~~~g~~~~~~~~~~~~ 103 (608)
T TIGR00764 38 RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNPEDPNMPRIVEVPAGEGREIVEDYKKKAF 103 (608)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCCCCCchHHHHHHHHhhchHHHHHHHHHhh
Confidence 489999999999999999999998754 22233322 223346677788888888876
No 329
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0015 Score=74.55 Aligned_cols=137 Identities=18% Similarity=0.160 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 225 (473)
+.-+|.|.||+|||.+++-+|+.. +..++.++.+.+. .++-|+.+..++.+.+++.. .....|||
T Consensus 209 ~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~aGa~~rge~E~rlk~l~k~v~~---~~~gvILf 285 (898)
T KOG1051|consen 209 NNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVAGAKRRGEFEERLKELLKEVES---GGGGVILF 285 (898)
T ss_pred CCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhcccCcccchHHHHHHHHHHHHHhc---CCCcEEEE
Confidence 556788999999999999999983 3456666666544 35678888888888887651 44677999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC-C----CCCCccccccCCCce
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN-D----FSTLYAPLIRDGRME 300 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN-~----~~~Ld~aLlR~GRfd 300 (473)
|||++-+.+.... +. .-...+.|.-++. ...+-+|+||. . .-.=||+|-| ||+
T Consensus 286 igelh~lvg~g~~---~~--~~d~~nlLkp~L~---------------rg~l~~IGatT~e~Y~k~iekdPalEr--rw~ 343 (898)
T KOG1051|consen 286 LGELHWLVGSGSN---YG--AIDAANLLKPLLA---------------RGGLWCIGATTLETYRKCIEKDPALER--RWQ 343 (898)
T ss_pred ecceeeeecCCCc---ch--HHHHHHhhHHHHh---------------cCCeEEEecccHHHHHHHHhhCcchhh--Ccc
Confidence 9999998765332 11 1122223332222 33478888653 2 2345899999 999
Q ss_pred EEEe-cCCHHHHHHHHHhhc
Q 011983 301 KFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 301 ~~i~-~P~~eeR~~Il~~~l 319 (473)
.... .|+.++-..||+..-
T Consensus 344 l~~v~~pS~~~~~~iL~~l~ 363 (898)
T KOG1051|consen 344 LVLVPIPSVENLSLILPGLS 363 (898)
T ss_pred eeEeccCcccchhhhhhhhh
Confidence 9988 799888777776443
No 330
>PRK14530 adenylate kinase; Provisional
Probab=97.15 E-value=0.00041 Score=66.69 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.||||+|||++|+.||+.+|++++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 478889999999999999999999776533
No 331
>PRK06217 hypothetical protein; Validated
Probab=97.14 E-value=0.00046 Score=64.69 Aligned_cols=31 Identities=16% Similarity=0.233 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4889999999999999999999998876544
No 332
>PRK04040 adenylate kinase; Provisional
Probab=97.14 E-value=0.00045 Score=65.50 Aligned_cols=30 Identities=17% Similarity=0.187 Sum_probs=26.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh--CCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM--GINP 185 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l--g~~~ 185 (473)
+|+.++++|+||||||++++.+++++ +..+
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~ 32 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKI 32 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeE
Confidence 36789999999999999999999999 5544
No 333
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.11 E-value=0.00046 Score=64.08 Aligned_cols=29 Identities=41% Similarity=0.690 Sum_probs=25.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
..+++.||||+|||++|+.+++++|...+
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~ 32 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHL 32 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 36788999999999999999999986554
No 334
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.11 E-value=0.00043 Score=64.69 Aligned_cols=32 Identities=19% Similarity=0.136 Sum_probs=28.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|.|.|++|+|||++.+++|+.++.+|+.++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 45788899999999999999999999998765
No 335
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=97.10 E-value=0.00069 Score=74.85 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=78.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecccccccCCCCChHHHHHHHHHHHH-----HHHHcCCceEEEecCCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIKKGKMCCLFINDLD 230 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----~~~~~~~p~ILfIDEiD 230 (473)
-|+||-|++|||||+++++++.-+.. +|..+..+--....+|.. -|...+..-. .++......|||+||+.
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~--Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~n 103 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGL--DLAATLRAGRPVAQRGLLAEADGGVLVLAMAE 103 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCc--hHHhHhhcCCcCCCCCceeeccCCEEEecCcc
Confidence 58999999999999999999998754 777666554444445532 1111111100 01112234799999998
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccC--CCCcccCCCCCceEEEecCCC---CCCccccccCCCceEEEec
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQL--PGMYNQEENPRVPIIVTGNDF---STLYAPLIRDGRMEKFYWA 305 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l--~g~~~~~~~~~V~VIaTTN~~---~~Ld~aLlR~GRfd~~i~~ 305 (473)
.+-. .+...|++-+++.+ |.+ +|.. .....+..+|+|-|.. ..|+++|+. ||+..+.+
T Consensus 104 ~~~~-------------~~~~aLleame~G~-vtIeR~G~s-~~~Pa~F~LIat~~~~~~~~~L~~~lLD--Rf~l~v~v 166 (584)
T PRK13406 104 RLEP-------------GTAARLAAALDTGE-VRLERDGLA-LRLPARFGLVALDEGAEEDERAPAALAD--RLAFHLDL 166 (584)
T ss_pred cCCH-------------HHHHHHHHHHhCCc-EEEEECCcE-EecCCCcEEEecCCChhcccCCCHHhHh--heEEEEEc
Confidence 5532 34566777666322 222 4441 1223455666663322 459999999 99999994
No 336
>PRK12608 transcription termination factor Rho; Provisional
Probab=97.09 E-value=0.0011 Score=69.32 Aligned_cols=76 Identities=18% Similarity=0.235 Sum_probs=46.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC-----CcEEecc---------------cccccCCCCChH-HHHH---HHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGI-----NPIMMSA---------------GELESGNAGEPA-KLIR---QRYREAAD 214 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~-----~~i~vs~---------------s~l~s~~~Ge~~-~~ir---~~f~~A~~ 214 (473)
-.||.||||||||++++.+++.+.. +++.+-. ..+......++. ..++ .+...|..
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast~de~~~~~~~v~~~~~~~Ae~ 214 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYASTFDRPPDEHIRVAELVLERAKR 214 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeecCCCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999999998643 2222111 111211211222 2222 33345555
Q ss_pred HHHcCCceEEEecCCCCccc
Q 011983 215 IIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~ 234 (473)
....++..+|++||+..++.
T Consensus 215 f~~~GkdVVLvlDsltr~A~ 234 (380)
T PRK12608 215 LVEQGKDVVILLDSLTRLAR 234 (380)
T ss_pred HHHcCCCEEEEEeCcHHHHH
Confidence 55578899999999998764
No 337
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.09 E-value=0.0026 Score=60.62 Aligned_cols=117 Identities=15% Similarity=0.131 Sum_probs=71.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecc---c----cc--cc--------------CCCC----ChHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA---G----EL--ES--------------GNAG----EPAKLIRQ 207 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~---s----~l--~s--------------~~~G----e~~~~ir~ 207 (473)
-.+.+||++|.|||+.|-.+|-. .|..+..+-. . +. .. .|.. +.....++
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 46889999999999999988877 2333222111 0 00 00 0111 12245667
Q ss_pred HHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC
Q 011983 208 RYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS 287 (473)
Q Consensus 208 ~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~ 287 (473)
.|+.|.+.+......+|++|||-..... .-.....|..+| + .....+=||+|.+.+
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~------gli~~eevi~~L----~-------------~rp~~~evVlTGR~~- 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKY------GYLDVEEVLEAL----N-------------ARPGMQHVVITGRGA- 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHC------CCccHHHHHHHH----H-------------cCCCCCEEEEECCCC-
Confidence 8899988888889999999999766543 111223343333 2 345667799999863
Q ss_pred CCccccccCCCceEE
Q 011983 288 TLYAPLIRDGRMEKF 302 (473)
Q Consensus 288 ~Ld~aLlR~GRfd~~ 302 (473)
++.|+. +.|.+
T Consensus 159 --p~~Lie--~ADlV 169 (191)
T PRK05986 159 --PRELIE--AADLV 169 (191)
T ss_pred --CHHHHH--hCchh
Confidence 555655 44443
No 338
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=97.05 E-value=0.0022 Score=60.97 Aligned_cols=44 Identities=23% Similarity=0.335 Sum_probs=34.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCCcEEecccccccCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGN 197 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i~vs~s~l~s~~ 197 (473)
...|..+++.|+||+|||++++.+..++ +-.++.++..++....
T Consensus 12 ~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~ 56 (199)
T PF06414_consen 12 QEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH 56 (199)
T ss_dssp -SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS
T ss_pred ccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc
Confidence 3789999999999999999999999998 7888999988876544
No 339
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=97.05 E-value=0.0039 Score=60.12 Aligned_cols=80 Identities=16% Similarity=0.149 Sum_probs=49.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC---------C-----CC--------Ch---HHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---------N-----AG--------EP---AKL 204 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~---------~-----~G--------e~---~~~ 204 (473)
|+.+...+++.|+||+|||++|..++.+ .|-+.++++..+-... | .+ .+ ...
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 91 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEEREERILGYAKSKGWDLEDYIDKSLYIVRLDPSDFKTS 91 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHcCCChHHHHhCCeEEEecCHHHHHhh
Confidence 5566788999999999999999988765 3656555554221100 0 00 00 011
Q ss_pred HHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 205 IRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 205 ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..+......++++..+..++||-+..+
T Consensus 92 ~~~l~~~~~~~i~~~~~~~vVIDsls~l 119 (224)
T TIGR03880 92 LNRIKNELPILIKELGASRVVIDPISLL 119 (224)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEcChHHH
Confidence 2333334444555677889999988876
No 340
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.05 E-value=0.00064 Score=62.58 Aligned_cols=31 Identities=19% Similarity=0.184 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.++|.|+||+|||++++.+|+.+|++|+..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5788999999999999999999999987543
No 341
>PRK04328 hypothetical protein; Provisional
Probab=97.05 E-value=0.0022 Score=63.31 Aligned_cols=37 Identities=22% Similarity=0.339 Sum_probs=27.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
|+.+...+|++||||+|||.+|..++.+ .|-+.++++
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 5666789999999999999998877654 344444444
No 342
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.04 E-value=0.0027 Score=59.28 Aligned_cols=73 Identities=22% Similarity=0.171 Sum_probs=45.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHH-------------HHHHHHHHHHcC-CceEEE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-------------RYREAADIIKKG-KMCCLF 225 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~-------------~f~~A~~~~~~~-~p~ILf 225 (473)
+|+.||||+|||++|..++...+.+.+++....-.. .+..+.|.. ......+.+... .+.+|+
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d---~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VL 78 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFD---DEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVL 78 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCC---HHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEE
Confidence 689999999999999999998787777776543221 111222211 001111122222 577999
Q ss_pred ecCCCCcccc
Q 011983 226 INDLDAGAGR 235 (473)
Q Consensus 226 IDEiDal~~~ 235 (473)
||-+..+...
T Consensus 79 IDclt~~~~n 88 (169)
T cd00544 79 IDCLTLWVTN 88 (169)
T ss_pred EEcHhHHHHH
Confidence 9998877543
No 343
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=97.04 E-value=0.004 Score=63.76 Aligned_cols=83 Identities=11% Similarity=0.020 Sum_probs=50.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---------hCCCcEEecccccccC--------CCCC-h-------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---------MGINPIMMSAGELESG--------NAGE-P------------- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---------lg~~~i~vs~s~l~s~--------~~Ge-~------------- 201 (473)
|+..-..++|+||||+|||.+|..+|-. .+-..++++..+-++. -.|. .
T Consensus 92 Gi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~~~a~~~g~d~~~~l~~i~~~~~~ 171 (313)
T TIGR02238 92 GIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIRAIAERFGVDPDAVLDNILYARAY 171 (313)
T ss_pred CCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHHHHHHHcCCChHHhcCcEEEecCC
Confidence 5666788999999999999999887742 1345566665431100 0000 0
Q ss_pred -HHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 202 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 202 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
.....+++......+....+.+|+||-|-+++..
T Consensus 172 ~~e~~~~~l~~l~~~i~~~~~~LvVIDSisal~r~ 206 (313)
T TIGR02238 172 TSEHQMELLDYLAAKFSEEPFRLLIVDSIMALFRV 206 (313)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEEcchHhhhh
Confidence 1111123333333444668999999999988753
No 344
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.03 E-value=0.0014 Score=64.55 Aligned_cols=34 Identities=24% Similarity=0.299 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
|+|+|+||+|||++|+.+++.+ +..++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999987 466666665444
No 345
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=97.02 E-value=0.00067 Score=62.12 Aligned_cols=27 Identities=30% Similarity=0.375 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
|.|+|+||||||+|++.+++. |.+++.
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v~ 28 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVVP 28 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE-
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEEe
Confidence 678999999999999999999 877663
No 346
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.02 E-value=0.0014 Score=67.96 Aligned_cols=69 Identities=16% Similarity=0.168 Sum_probs=42.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC----CcEEecc-cccc---------cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI----NPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~----~~i~vs~-s~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
..+|+.||+|+|||++.+++.+.+.. .++.+.. .++. ...+|.........++.+. +..|.+
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~l----r~~pd~ 198 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAAL----REDPDV 198 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhh----ccCCCE
Confidence 56899999999999999999987642 2222211 1111 1112322222334444444 889999
Q ss_pred EEecCCC
Q 011983 224 LFINDLD 230 (473)
Q Consensus 224 LfIDEiD 230 (473)
|++||+-
T Consensus 199 i~vgEir 205 (343)
T TIGR01420 199 ILIGEMR 205 (343)
T ss_pred EEEeCCC
Confidence 9999983
No 347
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=97.01 E-value=0.0021 Score=72.94 Aligned_cols=83 Identities=18% Similarity=0.188 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC----CCCCh--------HHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~f~~A~~~~~ 217 (473)
|+..-..++|+||||||||+||-.++.. .|-..++++..+-... -.|-. .....+.+..+..+++
T Consensus 56 Gip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~~~A~~lGvDl~~llv~~~~~~E~~l~~i~~lv~ 135 (790)
T PRK09519 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDPDYAKKLGVDTDSLLVSQPDTGEQALEIADMLIR 135 (790)
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhHHHHHHcCCChhHeEEecCCCHHHHHHHHHHHhh
Confidence 5666789999999999999999665443 4556666665432210 00100 0011223444555566
Q ss_pred cCCceEEEecCCCCcccc
Q 011983 218 KGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~~ 235 (473)
...+.+|+||-+.++.++
T Consensus 136 ~~~~~LVVIDSI~aL~~r 153 (790)
T PRK09519 136 SGALDIVVIDSVAALVPR 153 (790)
T ss_pred cCCCeEEEEcchhhhcch
Confidence 788999999999999863
No 348
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.0006 Score=63.02 Aligned_cols=28 Identities=21% Similarity=0.400 Sum_probs=25.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
.|-+.||||||||++|+.+|+++|++++
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~gl~~v 29 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHLGLKLV 29 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHhCCcee
Confidence 3678899999999999999999999985
No 349
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.01 E-value=0.00056 Score=63.83 Aligned_cols=30 Identities=30% Similarity=0.602 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.++++|.||||||++|+.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48899999999999999999 9999887655
No 350
>PRK14528 adenylate kinase; Provisional
Probab=97.01 E-value=0.00072 Score=63.78 Aligned_cols=30 Identities=23% Similarity=0.355 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+.+++.||||+|||++|+.+++..|++.+.
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is 31 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIS 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 348899999999999999999999877654
No 351
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.00 E-value=0.0028 Score=60.69 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=26.9
Q ss_pred CCCCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 151 LPNVKVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 151 ~~~~~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.|+.+....++|.|+-|+|||++++.|+.+
T Consensus 46 ~pg~k~d~~lvl~G~QG~GKStf~~~L~~~ 75 (198)
T PF05272_consen 46 EPGCKNDTVLVLVGKQGIGKSTFFRKLGPE 75 (198)
T ss_pred CCCCcCceeeeEecCCcccHHHHHHHHhHH
Confidence 568888889999999999999999999766
No 352
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=96.99 E-value=0.0054 Score=58.35 Aligned_cols=23 Identities=26% Similarity=0.031 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
...++|.||.|+|||++.+.|+.
T Consensus 29 ~~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 29 GRLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred CeEEEEECCCCCccHHHHHHHHH
Confidence 36799999999999999999993
No 353
>PRK02496 adk adenylate kinase; Provisional
Probab=96.99 E-value=0.00075 Score=63.06 Aligned_cols=29 Identities=28% Similarity=0.294 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
-++|.||||+|||++|+.+|+.++++.+.
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~ 31 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIS 31 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 47889999999999999999999876553
No 354
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=96.99 E-value=0.0063 Score=63.10 Aligned_cols=82 Identities=11% Similarity=-0.003 Sum_probs=49.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEeccccccc-----------CC-------------CC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES-----------GN-------------AG 199 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s-----------~~-------------~G 199 (473)
|+..-....|+||||||||.+|..+|-.. +-..++++...-+. ++ .-
T Consensus 122 Gi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~ia~~~g~d~~~~l~~I~~~~~~ 201 (344)
T PLN03187 122 GIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVPIAERFGMDADAVLDNIIYARAY 201 (344)
T ss_pred CCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHHHHHHcCCChhhhcCeEEEecCC
Confidence 55666788899999999999999887432 23556666532110 00 00
Q ss_pred ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 200 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 200 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
..+. +..++......+....+.+|+||-|-+++..
T Consensus 202 ~~e~-~~~~l~~l~~~i~~~~~~LvVIDSital~r~ 236 (344)
T PLN03187 202 TYEH-QYNLLLGLAAKMAEEPFRLLIVDSVIALFRV 236 (344)
T ss_pred CHHH-HHHHHHHHHHHHHhcCCCEEEEeCcHHhhhc
Confidence 1111 1123333333444667999999999988653
No 355
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=96.99 E-value=0.0016 Score=63.51 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=46.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC--------CCcEEecc-cccccCCCCChHHHHHHHHH------H---HHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG--------INPIMMSA-GELESGNAGEPAKLIRQRYR------E---AADIIK 217 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg--------~~~i~vs~-s~l~s~~~Ge~~~~ir~~f~------~---A~~~~~ 217 (473)
.-...|+.||||||||++.+-||+-+. ..+..++- +++.....|-+.-.+-...+ + -..+++
T Consensus 136 g~lntLiigpP~~GKTTlLRdiaR~~s~g~~~~l~kkv~IiDersEIag~~~gvpq~~~g~R~dVld~cpk~~gmmmaIr 215 (308)
T COG3854 136 GWLNTLIIGPPQVGKTTLLRDIARLLSDGINQFLPKKVGIIDERSEIAGCLNGVPQHGRGRRMDVLDPCPKAEGMMMAIR 215 (308)
T ss_pred CceeeEEecCCCCChHHHHHHHHHHhhccccccCCceEEEEeccchhhccccCCchhhhhhhhhhcccchHHHHHHHHHH
Confidence 345688999999999999999998742 23333433 34444444443322111111 0 123445
Q ss_pred cCCceEEEecCCC
Q 011983 218 KGKMCCLFINDLD 230 (473)
Q Consensus 218 ~~~p~ILfIDEiD 230 (473)
.+.|-|+++|||.
T Consensus 216 sm~PEViIvDEIG 228 (308)
T COG3854 216 SMSPEVIIVDEIG 228 (308)
T ss_pred hcCCcEEEEeccc
Confidence 8999999999996
No 356
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=96.99 E-value=0.0011 Score=67.65 Aligned_cols=50 Identities=18% Similarity=0.226 Sum_probs=39.3
Q ss_pred HHHHHHHhhhc-CCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 140 VVVHITKNFLN-LPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 140 ~~~~i~k~~l~-~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.+..+++.++. ...+.++..|+|.|+||||||++++.+|+.+|++|+.++
T Consensus 115 ~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 115 RVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 34555555544 234567789999999999999999999999999998544
No 357
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.98 E-value=0.004 Score=65.01 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=24.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+|+||.|||.-|||||+|.-.....
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 357999999999999999999999865
No 358
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=96.98 E-value=0.00066 Score=65.06 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
|+|.||||+|||++|+.+|+.+|+..+.
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is 29 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS 29 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 6889999999999999999999876544
No 359
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.96 E-value=0.0032 Score=58.15 Aligned_cols=57 Identities=21% Similarity=0.306 Sum_probs=40.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCC---CCh----HHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNA---GEP----AKLIRQRYREAA 213 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~---Ge~----~~~ir~~f~~A~ 213 (473)
|..|.|.|.||+|||++|+++.+.+ |.+.+.+++..+...+- |-+ ..+++.+-.-|.
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~~dl~fs~~dR~e~~rr~~~~A~ 68 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLNADLGFSKEDREENIRRIAEVAK 68 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTTTT--SSHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccCCCCCCCHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999985 78899999887775442 222 234555555554
No 360
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=96.96 E-value=0.0049 Score=57.82 Aligned_cols=117 Identities=15% Similarity=0.210 Sum_probs=72.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEEe---c----cccccc---------------CCCC----ChHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIMM---S----AGELES---------------GNAG----EPAKLIRQRY 209 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~v---s----~s~l~s---------------~~~G----e~~~~ir~~f 209 (473)
-+.+|+++|.|||+.|-.+|-. .|.+++.+ . .++... .|.. +.....++.|
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 4668889999999999988877 35544322 1 122100 0111 1224567788
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
+.|.+.+......+|++||+-...... -.....|..+| + ...+++=||+|...+
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~g------li~~~~v~~lL----~-------------~rp~~~evVlTGR~~--- 140 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYG------YLDVEEVVEAL----Q-------------ERPGHQHVIITGRGC--- 140 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCC------CcCHHHHHHHH----H-------------hCCCCCEEEEECCCC---
Confidence 888888888899999999997655431 11222333333 2 345667799999764
Q ss_pred ccccccCCCceEEE
Q 011983 290 YAPLIRDGRMEKFY 303 (473)
Q Consensus 290 d~aLlR~GRfd~~i 303 (473)
|+.|+. ..|.+-
T Consensus 141 p~~l~e--~AD~VT 152 (173)
T TIGR00708 141 PQDLLE--LADLVT 152 (173)
T ss_pred CHHHHH--hCceee
Confidence 566665 555443
No 361
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=96.96 E-value=0.006 Score=64.69 Aligned_cols=63 Identities=21% Similarity=0.181 Sum_probs=40.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFIND 228 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~----lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDE 228 (473)
+....++++.||||||||+++.+++.+ .| -.++.. .++..+-. ..+. -....+|+|||
T Consensus 206 ve~~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a-----------~Lf~~L~~---~~lg~v~~~DlLI~DE 268 (449)
T TIGR02688 206 VEPNYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVA-----------KLFYNIST---RQIGLVGRWDVVAFDE 268 (449)
T ss_pred HhcCCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHH-----------HHHHHHHH---HHHhhhccCCEEEEEc
Confidence 345578999999999999999998877 23 111222 22211111 1111 45688999999
Q ss_pred CCCcc
Q 011983 229 LDAGA 233 (473)
Q Consensus 229 iDal~ 233 (473)
+..+.
T Consensus 269 vgylp 273 (449)
T TIGR02688 269 VATLK 273 (449)
T ss_pred CCCCc
Confidence 98753
No 362
>PRK00279 adk adenylate kinase; Reviewed
Probab=96.96 E-value=0.00075 Score=64.89 Aligned_cols=34 Identities=35% Similarity=0.519 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
-|+++||||+|||++|+.+|+.+|+..+ +.+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~i--s~~dl~ 35 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHI--STGDML 35 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--ECCccH
Confidence 3889999999999999999999987655 444443
No 363
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=96.94 E-value=0.0059 Score=62.39 Aligned_cols=82 Identities=16% Similarity=0.231 Sum_probs=50.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEecccccccC--------CCCC-hH------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-PA------------ 202 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s~--------~~Ge-~~------------ 202 (473)
|+.....++|+||||+|||.+|-.+|... +-..++++..+-+.. ..|. .+
T Consensus 98 Gi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~~~~~~~g~~~~~~l~~i~~~~~~ 177 (317)
T PRK04301 98 GIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIEQMAEALGLDPDEVLDNIHVARAY 177 (317)
T ss_pred CccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHHHHHHHcCCChHhhhccEEEEeCC
Confidence 56777899999999999999999998763 235666665431110 0010 00
Q ss_pred --HHHHHHHHHHHHHHHc-CCceEEEecCCCCccc
Q 011983 203 --KLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 234 (473)
Q Consensus 203 --~~ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~ 234 (473)
.....+......++.. ..+.+|+||-|-+++.
T Consensus 178 ~~~~~~~~~~~l~~~i~~~~~~~lvVIDSisa~~~ 212 (317)
T PRK04301 178 NSDHQMLLAEKAEELIKEGENIKLVIVDSLTAHFR 212 (317)
T ss_pred CHHHHHHHHHHHHHHHhccCceeEEEEECchHHhh
Confidence 1111223333334444 6788999999998764
No 364
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.93 E-value=0.0034 Score=63.77 Aligned_cols=40 Identities=18% Similarity=0.419 Sum_probs=31.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEecccc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGE 192 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~ 192 (473)
|+.....++++||||+|||++|-.+|... +-..++++..+
T Consensus 91 Gi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 91 GIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 56677889999999999999999998763 22566666543
No 365
>PRK05973 replicative DNA helicase; Provisional
Probab=96.93 E-value=0.012 Score=57.93 Aligned_cols=38 Identities=13% Similarity=0.159 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||+++-.++.+. |.+.++++.
T Consensus 60 Gl~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 60 QLKPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CCCCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 55666789999999999999988877753 666666554
No 366
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=96.92 E-value=0.00099 Score=62.11 Aligned_cols=34 Identities=15% Similarity=0.058 Sum_probs=29.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
+..|+|.||+|+|||++++.+|+.++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 4568999999999999999999999998876653
No 367
>PF14516 AAA_35: AAA-like domain
Probab=96.91 E-value=0.055 Score=55.80 Aligned_cols=166 Identities=14% Similarity=0.125 Sum_probs=86.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHH--------------------------
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIR-------------------------- 206 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir-------------------------- 206 (473)
+..-+.++||..+|||++...+.+.+ |...+.++...+.+......++.++
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 34578999999999999998887664 7777778776654332222221111
Q ss_pred -----HHHHHHHHHHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEE
Q 011983 207 -----QRYREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPII 280 (473)
Q Consensus 207 -----~~f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VI 280 (473)
..|++. +++ ..+|-||+|||+|.++.... -.......|...-+.- .. ...-.++.+|
T Consensus 110 ~~~~~~~~~~~--ll~~~~~~lVL~iDEiD~l~~~~~-------~~~dF~~~LR~~~~~~---~~-----~~~~~~L~li 172 (331)
T PF14516_consen 110 KISCTEYFEEY--LLKQIDKPLVLFIDEIDRLFEYPQ-------IADDFFGLLRSWYEQR---KN-----NPIWQKLRLI 172 (331)
T ss_pred hhhHHHHHHHH--HHhcCCCCEEEEEechhhhccCcc-------hHHHHHHHHHHHHHhc---cc-----CcccceEEEE
Confidence 112211 122 46799999999999976311 0112333343322200 00 0112233344
Q ss_pred EecCCCCCCccc-cccCCCceEEEecC--CHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCc
Q 011983 281 VTGNDFSTLYAP-LIRDGRMEKFYWAP--TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQS 340 (473)
Q Consensus 281 aTTN~~~~Ld~a-LlR~GRfd~~i~~P--~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sga~ 340 (473)
++......+... =.+|.-+-.-+.+| +.++-..+++.+-. .++...+..+.+-..|+.
T Consensus 173 ~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~--~~~~~~~~~l~~~tgGhP 233 (331)
T PF14516_consen 173 LAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGL--EFSQEQLEQLMDWTGGHP 233 (331)
T ss_pred EecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhc--cCCHHHHHHHHHHHCCCH
Confidence 333221112211 23444444445553 67777777776633 355555666655555543
No 368
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=96.91 E-value=0.0012 Score=70.53 Aligned_cols=145 Identities=19% Similarity=0.249 Sum_probs=82.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-----cCCceEEEecCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----KGKMCCLFINDL 229 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-----~~~p~ILfIDEi 229 (473)
+.--.|+|.|.||+.||-|.+.|.+-.....+..--+ +.-+|-++..++.-..--. .++ -....|-.|||+
T Consensus 373 RGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrG---SSGVGLTAAVmkDpvTgEM-~LEGGALVLAD~GICCIDEf 448 (721)
T KOG0482|consen 373 RGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRG---SSGVGLTAAVMKDPVTGEM-VLEGGALVLADGGICCIDEF 448 (721)
T ss_pred ecceeEEecCCCchhHHHHHHHHHhcCcccceecCCC---CCccccchhhhcCCCCCee-EeccceEEEccCceEeehhh
Confidence 3446899999999999999999998765554433222 3345555544432111000 000 122446679999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-------------CCccccccC
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-------------TLYAPLIRD 296 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-------------~Ld~aLlR~ 296 (473)
|++..... +.-+.+. -+++ ..|.. -| .+..-+.+.-|++++|... .||+||++
T Consensus 449 DKM~e~DR-tAIHEVM---EQQT-ISIaK-------AG-I~TtLNAR~sILaAANPayGRYnprrs~e~NI~LPaALLS- 514 (721)
T KOG0482|consen 449 DKMDESDR-TAIHEVM---EQQT-ISIAK-------AG-INTTLNARTSILAAANPAYGRYNPRRSPEQNINLPAALLS- 514 (721)
T ss_pred hhhhhhhh-HHHHHHH---Hhhh-hhhhh-------hc-cccchhhhHHhhhhcCccccccCcccChhHhcCCcHHHHH-
Confidence 99865321 1111111 1111 11111 11 1223356677888887542 58999999
Q ss_pred CCceEEEe---cCCHHHHHHHHHhh
Q 011983 297 GRMEKFYW---APTREDRIGVCSGI 318 (473)
Q Consensus 297 GRfd~~i~---~P~~eeR~~Il~~~ 318 (473)
|||.... -|+++.-..+-+++
T Consensus 515 -RFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 515 -RFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred -hhhhhhhhccCCcccchHHHHHHh
Confidence 9998766 38887777776644
No 369
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=96.91 E-value=0.012 Score=56.88 Aligned_cols=37 Identities=22% Similarity=0.319 Sum_probs=27.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
|+.+...++++||||+|||+++..++.+ .|-..+.++
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is 55 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVT 55 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEE
Confidence 5667788999999999999999887654 244444444
No 370
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.90 E-value=0.012 Score=62.16 Aligned_cols=71 Identities=15% Similarity=0.192 Sum_probs=45.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.++ .++|+||-+||||++.+.+.+...-..+.++..++......- ..+...+..+. ......||||||..+
T Consensus 36 ~~~-i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l--~d~~~~~~~~~----~~~~~yifLDEIq~v 106 (398)
T COG1373 36 RPF-IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIEL--LDLLRAYIELK----EREKSYIFLDEIQNV 106 (398)
T ss_pred CCc-EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhH--HHHHHHHHHhh----ccCCceEEEecccCc
Confidence 344 999999999999999998888875556666665554322110 11112222222 225589999999865
No 371
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.90 E-value=0.0021 Score=70.43 Aligned_cols=59 Identities=22% Similarity=0.205 Sum_probs=37.6
Q ss_pred CCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC-CcEEecc
Q 011983 130 LYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI-NPIMMSA 190 (473)
Q Consensus 130 ~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~-~~i~vs~ 190 (473)
+|.-.+..++++..+......+. ....+++|.||||+|||+||++||+.+.. +++.+.+
T Consensus 78 ~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 78 FYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred ccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 44445555555543322222232 23468999999999999999999998754 4444444
No 372
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=96.90 E-value=0.0046 Score=73.52 Aligned_cols=146 Identities=15% Similarity=0.191 Sum_probs=88.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc------ccCC-CCChHH--H-HHHHHHHHHHHHHcCCceEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL------ESGN-AGEPAK--L-IRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l------~s~~-~Ge~~~--~-ir~~f~~A~~~~~~~~p~IL 224 (473)
..-+.+||-|.||+|||+|..++|+++|-.++.++.++- ++.+ +++... . ...-|-.| -....-+
T Consensus 1541 qv~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~a-----mr~G~WV 1615 (4600)
T COG5271 1541 QVGKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHA-----MRDGGWV 1615 (4600)
T ss_pred hcCCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHH-----hhcCCEE
Confidence 345679999999999999999999999999999998652 2222 222111 1 11223333 2345567
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc-CCCCCceEEEecCCC------CCCccccccCC
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGNDF------STLYAPLIRDG 297 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~-~~~~~V~VIaTTN~~------~~Ld~aLlR~G 297 (473)
++||+.-.. |.|..-|...+|+-...-++-.=.. .--++..|.+|-|.. ..||..++.
T Consensus 1616 lLDEiNLaS-------------QSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~n-- 1680 (4600)
T COG5271 1616 LLDEINLAS-------------QSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLN-- 1680 (4600)
T ss_pred EeehhhhhH-------------HHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhh--
Confidence 899986331 2344444444453322222211000 112555667766643 468999999
Q ss_pred CceEEEe-cCCHHHHHHHHHhhcC
Q 011983 298 RMEKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 298 Rfd~~i~-~P~~eeR~~Il~~~l~ 320 (473)
||..++. ..+.++...|..+++.
T Consensus 1681 RFsvV~~d~lt~dDi~~Ia~~~yp 1704 (4600)
T COG5271 1681 RFSVVKMDGLTTDDITHIANKMYP 1704 (4600)
T ss_pred hhheEEecccccchHHHHHHhhCC
Confidence 9988776 5666777777766664
No 373
>PRK01184 hypothetical protein; Provisional
Probab=96.89 E-value=0.00096 Score=62.25 Aligned_cols=30 Identities=33% Similarity=0.542 Sum_probs=25.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
+.|+|.||||+||||+++ ++++.|++++..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 468999999999999998 788998877544
No 374
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.89 E-value=0.019 Score=59.82 Aligned_cols=95 Identities=16% Similarity=0.281 Sum_probs=62.1
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc---------------CCCCChHH
Q 011983 139 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------------GNAGEPAK 203 (473)
Q Consensus 139 ~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---------------~~~Ge~~~ 203 (473)
+..+...+.++.......|.++.|||-.|||||++.+.+.++++.+.+.+++-++.. ...|..-+
T Consensus 12 e~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~~~~d~dg~~~~ 91 (438)
T KOG2543|consen 12 ESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKSQLADKDGDKVE 91 (438)
T ss_pred HHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHhccCCCchhhhh
Confidence 345555566666544578999999999999999999999999999988888744321 12222111
Q ss_pred H-------HHHHHHHHHHHHHcCCceEEEecCCCCcc
Q 011983 204 L-------IRQRYREAADIIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 204 ~-------ir~~f~~A~~~~~~~~p~ILfIDEiDal~ 233 (473)
. ...+|.+--.+-+..+...|++|.+|.+.
T Consensus 92 ~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr 128 (438)
T KOG2543|consen 92 GDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR 128 (438)
T ss_pred hHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh
Confidence 1 11223321112223467789999999885
No 375
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.87 E-value=0.021 Score=56.41 Aligned_cols=138 Identities=14% Similarity=0.225 Sum_probs=75.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc--EEecccccccCC---C-----C------ChHHHHHHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAGELESGN---A-----G------EPAKLIRQRYREAADIIK 217 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~--i~vs~s~l~s~~---~-----G------e~~~~ir~~f~~A~~~~~ 217 (473)
.+.|-.+.+.|++|+|||++++.+...+.-.| +.+-.+.....+ + . +.+..+...-....+..+
T Consensus 10 ~~~~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~ 89 (241)
T PF04665_consen 10 LKDPFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIK 89 (241)
T ss_pred cCCCceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhh
Confidence 46677788889999999999999988765422 222222211111 0 0 001111111111111111
Q ss_pred ---c---CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 218 ---K---GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 218 ---~---~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
. ..+++|+|||+-. . . ...+.+.+.+.+ ..--++.+|.++...-.||+
T Consensus 90 k~~~~k~~~~~LiIlDD~~~---~-----~--~k~~~l~~~~~~----------------gRH~~is~i~l~Q~~~~lp~ 143 (241)
T PF04665_consen 90 KSPQKKNNPRFLIILDDLGD---K-----K--LKSKILRQFFNN----------------GRHYNISIIFLSQSYFHLPP 143 (241)
T ss_pred hhcccCCCCCeEEEEeCCCC---c-----h--hhhHHHHHHHhc----------------ccccceEEEEEeeecccCCH
Confidence 1 3478999999732 1 0 011223333321 22356888889988899999
Q ss_pred ccccCCCceEEEec-CCHHHHHHHHHhhc
Q 011983 292 PLIRDGRMEKFYWA-PTREDRIGVCSGIF 319 (473)
Q Consensus 292 aLlR~GRfd~~i~~-P~~eeR~~Il~~~l 319 (473)
.++. -.+.++.+ -+..+...|++.+.
T Consensus 144 ~iR~--n~~y~i~~~~s~~dl~~i~~~~~ 170 (241)
T PF04665_consen 144 NIRS--NIDYFIIFNNSKRDLENIYRNMN 170 (241)
T ss_pred HHhh--cceEEEEecCcHHHHHHHHHhcc
Confidence 9866 67777754 34555555555554
No 376
>PF13245 AAA_19: Part of AAA domain
Probab=96.86 E-value=0.0017 Score=52.65 Aligned_cols=34 Identities=15% Similarity=0.280 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHH-HHHHHHHHHh------CCCcEEeccc
Q 011983 158 LILGIWGGKGQGKS-FQCELVFAKM------GINPIMMSAG 191 (473)
Q Consensus 158 ~glLL~GPPGtGKT-~lAkaIA~~l------g~~~i~vs~s 191 (473)
..+++.|||||||| ++++.++... +-.++.+..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t 51 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPT 51 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCC
Confidence 45677999999999 5566666665 4445555543
No 377
>PLN02674 adenylate kinase
Probab=96.85 E-value=0.0011 Score=65.53 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=30.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
+++..|+|.||||+|||++|+.+|+..|+. .++.++++
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~--his~Gdll 66 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLC--HLATGDML 66 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCc--EEchhHHH
Confidence 445668889999999999999999999865 45555544
No 378
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.85 E-value=0.003 Score=60.33 Aligned_cols=25 Identities=24% Similarity=0.476 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
|+.++|.||+|+|||+.+-.+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 7889999999999999887777763
No 379
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.85 E-value=0.0045 Score=64.92 Aligned_cols=102 Identities=20% Similarity=0.115 Sum_probs=68.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCC------CC--------ChHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGN------AG--------EPAKLIRQRYREAADII 216 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~------~G--------e~~~~ir~~f~~A~~~~ 216 (473)
|+-+-..+|+-|.||.|||+|.-.++..+. -+.+++++.+-...+ .| -.+.++..+++...
T Consensus 89 G~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~--- 165 (456)
T COG1066 89 GLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELE--- 165 (456)
T ss_pred CcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHH---
Confidence 334446788899999999999888887743 268889886543211 11 12334455555444
Q ss_pred HcCCceEEEecCCCCccccCCCCCccchh-hHHHHHHHHHhhc
Q 011983 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVN-NQMVNATLMNIAD 258 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~-~~~v~~~Ll~lld 258 (473)
..+|.+++||-|-.+....-.....++. -+.+...|+++.+
T Consensus 166 -~~~p~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK 207 (456)
T COG1066 166 -QEKPDLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAK 207 (456)
T ss_pred -hcCCCEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHH
Confidence 8999999999999987654222333443 4677888888776
No 380
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=96.85 E-value=0.0015 Score=71.27 Aligned_cols=144 Identities=19% Similarity=0.255 Sum_probs=80.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHH------HHHHHHHHHHcCCceEEEecC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ------RYREAADIIKKGKMCCLFIND 228 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~------~f~~A~~~~~~~~p~ILfIDE 228 (473)
+.-..+++.|.||+|||-+.+++++-+....+ +++. .+.-.|-+...++. .++ |-.++ -....|--|||
T Consensus 376 RGDinv~iVGDPgt~KSQfLk~v~~fsPR~vY-tsGk--aSSaAGLTaaVvkD~esgdf~iE-AGALm-LADnGICCIDE 450 (764)
T KOG0480|consen 376 RGDINVCIVGDPGTGKSQFLKAVCAFSPRSVY-TSGK--ASSAAGLTAAVVKDEESGDFTIE-AGALM-LADNGICCIDE 450 (764)
T ss_pred cCCceEEEeCCCCccHHHHHHHHhccCCcceE-ecCc--ccccccceEEEEecCCCCceeee-cCcEE-EccCceEEech
Confidence 44468999999999999999999998765533 3321 11112222111110 111 11011 12344667899
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCC--CCcccCCCCCceEEEecCCCC-------------CCcccc
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP--GMYNQEENPRVPIIVTGNDFS-------------TLYAPL 293 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~--g~~~~~~~~~V~VIaTTN~~~-------------~Ld~aL 293 (473)
+|++-.+. + .+|.+-|+ .+.+++- |. ...-..+--||+|+|... .|.++|
T Consensus 451 FDKMd~~d----q---------vAihEAME-QQtISIaKAGv-~aTLnARtSIlAAANPv~GhYdR~ktl~eNi~msApi 515 (764)
T KOG0480|consen 451 FDKMDVKD----Q---------VAIHEAME-QQTISIAKAGV-VATLNARTSILAAANPVGGHYDRKKTLRENINMSAPI 515 (764)
T ss_pred hcccChHh----H---------HHHHHHHH-hheehheecce-EEeecchhhhhhhcCCcCCccccccchhhhcCCCchh
Confidence 99874321 1 22222222 1111111 11 112234556888887652 479999
Q ss_pred ccCCCceEEEec---CCHHHHHHHHHhhcC
Q 011983 294 IRDGRMEKFYWA---PTREDRIGVCSGIFR 320 (473)
Q Consensus 294 lR~GRfd~~i~~---P~~eeR~~Il~~~l~ 320 (473)
++ |||.+|.+ |++..-..|-++++.
T Consensus 516 mS--RFDL~FiLlD~~nE~~D~~ia~hIld 543 (764)
T KOG0480|consen 516 MS--RFDLFFILLDDCNEVVDYAIARHILD 543 (764)
T ss_pred hh--hhcEEEEEecCCchHHHHHHHHHHHH
Confidence 99 99999984 888777777666654
No 381
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.83 E-value=0.00083 Score=60.75 Aligned_cols=31 Identities=32% Similarity=0.568 Sum_probs=25.4
Q ss_pred EEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 162 IWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 162 L~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|.||||+|||++|+.||++.|+ ..++.+++.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~--~~is~~~ll 31 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGL--VHISVGDLL 31 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTS--EEEEHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCc--ceechHHHH
Confidence 5799999999999999999875 556655554
No 382
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.83 E-value=0.0075 Score=54.79 Aligned_cols=28 Identities=25% Similarity=0.297 Sum_probs=23.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+-..++|.||.|+|||++.++++....
T Consensus 23 ~~g~~~~i~G~nGsGKStll~~l~g~~~ 50 (157)
T cd00267 23 KAGEIVALVGPNGSGKSTLLRAIAGLLK 50 (157)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 3446889999999999999999998753
No 383
>PTZ00035 Rad51 protein; Provisional
Probab=96.82 E-value=0.0083 Score=62.09 Aligned_cols=82 Identities=13% Similarity=0.103 Sum_probs=49.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEecccccccC---------C---------------CC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELESG---------N---------------AG 199 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s~---------~---------------~G 199 (473)
|+..-..+.|+||||+|||+++..+|-... -..++++....+.. + .-
T Consensus 114 Gi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~eri~~ia~~~g~~~~~~l~nI~~~~~~ 193 (337)
T PTZ00035 114 GIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPERIVQIAERFGLDPEDVLDNIAYARAY 193 (337)
T ss_pred CCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHHHHHHHHHhCCChHhHhhceEEEccC
Confidence 566677899999999999999998875422 23445554321110 0 00
Q ss_pred ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 200 EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 200 e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
..+.. ..++..+..++....+.+|+||-|-+++..
T Consensus 194 ~~e~~-~~~l~~~~~~l~~~~~~lvVIDSital~r~ 228 (337)
T PTZ00035 194 NHEHQ-MQLLSQAAAKMAEERFALLIVDSATALFRV 228 (337)
T ss_pred CHHHH-HHHHHHHHHHhhccCccEEEEECcHHhhhh
Confidence 01111 122223333444678899999999987653
No 384
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.82 E-value=0.0026 Score=60.27 Aligned_cols=26 Identities=23% Similarity=0.243 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.|+.+.|.||+|+|||+|++.+.++.
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57889999999999999999999885
No 385
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=96.81 E-value=0.019 Score=58.16 Aligned_cols=33 Identities=24% Similarity=0.548 Sum_probs=28.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
+....|..|.|+|+=|+|||++.+.+-+++.-.
T Consensus 15 ~~~~~~~~IgL~G~WGsGKSs~l~~l~~~L~~~ 47 (325)
T PF07693_consen 15 PDSDDPFVIGLYGEWGSGKSSFLNMLKEELKED 47 (325)
T ss_pred cCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcc
Confidence 334789999999999999999999998886544
No 386
>PRK04182 cytidylate kinase; Provisional
Probab=96.80 E-value=0.0012 Score=60.61 Aligned_cols=29 Identities=31% Similarity=0.534 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.|+|.|+||+|||++++.+|+.+|++++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 58899999999999999999999998765
No 387
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=96.80 E-value=0.0059 Score=57.05 Aligned_cols=41 Identities=17% Similarity=0.243 Sum_probs=32.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE 194 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~ 194 (473)
..++..++|.|+||+|||++++.++..+ |...+.+++..+.
T Consensus 15 ~~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r 58 (184)
T TIGR00455 15 GHRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVR 58 (184)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHH
Confidence 3677899999999999999999999986 4445666665543
No 388
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=96.79 E-value=0.0072 Score=55.60 Aligned_cols=28 Identities=21% Similarity=0.299 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+++--.+.|.||.|+|||+|.+.++...
T Consensus 23 i~~Ge~~~l~G~nGsGKSTLl~~i~G~~ 50 (163)
T cd03216 23 VRRGEVHALLGENGAGKSTLMKILSGLY 50 (163)
T ss_pred EeCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455689999999999999999999874
No 389
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=96.79 E-value=0.0054 Score=57.39 Aligned_cols=25 Identities=28% Similarity=0.276 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+---++|.||+|||||+|.|.+|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3346899999999999999999987
No 390
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.79 E-value=0.0016 Score=61.59 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=17.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+++||||||||+++..++..+
T Consensus 19 ~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 19 ITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp -EEEE-STTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCChHHHHHHHHHHh
Confidence 68999999999998766666665
No 391
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.78 E-value=0.0016 Score=62.66 Aligned_cols=24 Identities=17% Similarity=0.234 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
-++|.|+||+|||++|+-+|+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 478999999999999999999964
No 392
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=96.78 E-value=0.0012 Score=56.98 Aligned_cols=22 Identities=27% Similarity=0.448 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l 181 (473)
|+|.|+||+|||++|+.+++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 393
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=96.77 E-value=0.0032 Score=74.18 Aligned_cols=168 Identities=13% Similarity=0.158 Sum_probs=94.4
Q ss_pred CCCcEEEEEcCCCCcHHHH-HHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHH-----HHHH-----cCCceE
Q 011983 155 KVPLILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAA-----DIIK-----KGKMCC 223 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~l-AkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~-----~~~~-----~~~p~I 223 (473)
..-++++++||||+|||++ +-++-+++-..++.++.+.... ++..++-+=+... .+.. .-+.-|
T Consensus 1492 nt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~-----T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lV 1566 (3164)
T COG5245 1492 NTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTM-----TPSKLSVLERETEYYPNTGVVRLYPKPVVKDLV 1566 (3164)
T ss_pred hccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccC-----CHHHHHHHHhhceeeccCCeEEEccCcchhheE
Confidence 3457999999999999996 7788888888888887764431 2222222212110 0000 011238
Q ss_pred EEecCCCCcccc-CCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccC-----CCCCceEEEecCCCCCC-----ccc
Q 011983 224 LFINDLDAGAGR-MGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE-----ENPRVPIIVTGNDFSTL-----YAP 292 (473)
Q Consensus 224 LfIDEiDal~~~-r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~-----~~~~V~VIaTTN~~~~L-----d~a 292 (473)
||.|||. .++ +.-..+ .+.-+|..+++ -.|+|..- ...+++|.+++|.+... +.-
T Consensus 1567 LFcDeIn--Lp~~~~y~~~------~vI~FlR~l~e------~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eR 1632 (3164)
T COG5245 1567 LFCDEIN--LPYGFEYYPP------TVIVFLRPLVE------RQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYER 1632 (3164)
T ss_pred EEeeccC--CccccccCCC------ceEEeeHHHHH------hcccccchhhhHhhhcceEEEccCCCCCCcccCccHHH
Confidence 9999999 333 221111 12223333333 45666542 34677888899877543 222
Q ss_pred cccCCCceEEEe--cCCHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCchhhH
Q 011983 293 LIRDGRMEKFYW--APTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFF 344 (473)
Q Consensus 293 LlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sga~l~f~ 344 (473)
++| | -.+++ .|.......|...++...-+-.+++..++..+..+...++
T Consensus 1633 f~r--~-~v~vf~~ype~~SL~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly 1683 (3164)
T COG5245 1633 FIR--K-PVFVFCCYPELASLRNIYEAVLMGSYLCFDEFNRLSEETMSASVELY 1683 (3164)
T ss_pred Hhc--C-ceEEEecCcchhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Confidence 333 2 23444 5999999999887776644444444444444443444333
No 394
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=96.77 E-value=0.0092 Score=56.11 Aligned_cols=20 Identities=30% Similarity=0.027 Sum_probs=18.5
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 011983 160 LGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~ 179 (473)
++|+||.|.|||++.+.++-
T Consensus 2 ~~ltG~N~~GKst~l~~i~~ 21 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGL 21 (185)
T ss_pred EEEECCCCCcHHHHHHHHHH
Confidence 68999999999999999983
No 395
>PLN02459 probable adenylate kinase
Probab=96.77 E-value=0.0018 Score=64.65 Aligned_cols=37 Identities=19% Similarity=0.262 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
.|..++|.||||+|||++|+.+|+.+|+.. ++.++++
T Consensus 28 ~~~~ii~~G~PGsGK~T~a~~la~~~~~~~--is~gdll 64 (261)
T PLN02459 28 RNVNWVFLGCPGVGKGTYASRLSKLLGVPH--IATGDLV 64 (261)
T ss_pred CccEEEEECCCCCCHHHHHHHHHHHhCCcE--EeCcHHH
Confidence 445577889999999999999999998654 5555443
No 396
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.77 E-value=0.0028 Score=66.37 Aligned_cols=68 Identities=13% Similarity=0.203 Sum_probs=42.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEeccc-ccc-----------cCCCCChHHHHHHHHHHHHHHHHcCCc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-----------SGNAGEPAKLIRQRYREAADIIKKGKM 221 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s-~l~-----------s~~~Ge~~~~ir~~f~~A~~~~~~~~p 221 (473)
.+|++||+|+|||++.+++.++.. .+.+.+... ++. ...+|.... -|..+...+-+..|
T Consensus 151 lilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~~~~----~~~~~l~~aLR~~P 226 (372)
T TIGR02525 151 LGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGRDVD----SFANGIRLALRRAP 226 (372)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCCCcc----CHHHHHHHhhccCC
Confidence 588999999999999999988763 233333221 111 111222111 23333333338899
Q ss_pred eEEEecCCC
Q 011983 222 CCLFINDLD 230 (473)
Q Consensus 222 ~ILfIDEiD 230 (473)
.+|++.|+-
T Consensus 227 D~I~vGEiR 235 (372)
T TIGR02525 227 KIIGVGEIR 235 (372)
T ss_pred CEEeeCCCC
Confidence 999999984
No 397
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.77 E-value=0.0058 Score=56.40 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
.+++.||||+|||+++..+|..+ |..++.+++.
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D 37 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAAD 37 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcC
Confidence 47899999999999999998874 5566665554
No 398
>PF13479 AAA_24: AAA domain
Probab=96.73 E-value=0.0026 Score=61.35 Aligned_cols=72 Identities=15% Similarity=0.083 Sum_probs=40.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCC-CC-----ChHHHHHHHHHHHHHHHHcCCceEEEecC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGN-AG-----EPAKLIRQRYREAADIIKKGKMCCLFIND 228 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~-~G-----e~~~~ir~~f~~A~~~~~~~~p~ILfIDE 228 (473)
.|..++||||||+|||++|..+ -..-|+.+..+... ..+ -+ .+-..+.+.+.+.. -....-..|+||.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~---~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~--~~~~~y~tiVIDs 76 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL---PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELE--EDEADYDTIVIDS 76 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC---CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHH--hccCCCCEEEEEC
Confidence 4678999999999999999888 11222333333111 011 00 12223333333221 0145677999999
Q ss_pred CCCc
Q 011983 229 LDAG 232 (473)
Q Consensus 229 iDal 232 (473)
++.+
T Consensus 77 is~~ 80 (213)
T PF13479_consen 77 ISWL 80 (213)
T ss_pred HHHH
Confidence 9876
No 399
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.73 E-value=0.004 Score=62.47 Aligned_cols=75 Identities=16% Similarity=0.181 Sum_probs=43.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccc---cCC-CCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---SGN-AGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~---s~~-~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
-|+|+|.||+|||++|+.|++. .+...+.++...+. +.| -...++.+|..+..+.+.. -.+..||++|+.--
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~-ls~~~iVI~Dd~nY 81 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERA-LSKDTIVILDDNNY 81 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHH-HTT-SEEEE-S---
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHh-hccCeEEEEeCCch
Confidence 3789999999999999999997 45666667654443 122 2335777777666554332 23447899998775
Q ss_pred ccc
Q 011983 232 GAG 234 (473)
Q Consensus 232 l~~ 234 (473)
+-+
T Consensus 82 iKg 84 (270)
T PF08433_consen 82 IKG 84 (270)
T ss_dssp SHH
T ss_pred HHH
Confidence 533
No 400
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=96.72 E-value=0.0064 Score=57.16 Aligned_cols=76 Identities=17% Similarity=0.087 Sum_probs=42.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC--cEEeccccc--ccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGEL--ESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~--~i~vs~s~l--~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
++-..+.|.||.|+|||+|.+.++...... -+.+.+..+ ......- +.--++...-|+.+ ...|.++++||--
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~L-SgGq~qrv~laral--~~~p~lllLDEPt 99 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDL-SGGELQRVAIAAAL--LRNATFYLFDEPS 99 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCC-CHHHHHHHHHHHHH--hcCCCEEEEECCc
Confidence 445678899999999999999999874211 122222111 0111100 11112333323211 6789999999976
Q ss_pred Ccc
Q 011983 231 AGA 233 (473)
Q Consensus 231 al~ 233 (473)
..+
T Consensus 100 s~L 102 (177)
T cd03222 100 AYL 102 (177)
T ss_pred ccC
Confidence 443
No 401
>PRK14974 cell division protein FtsY; Provisional
Probab=96.72 E-value=0.013 Score=60.59 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=27.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
..|..++|.||||+|||+++..+|..+ |..+..+.+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 358899999999999999888888764 445544444
No 402
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.71 E-value=0.0019 Score=67.69 Aligned_cols=26 Identities=19% Similarity=0.282 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.....++|.||+|+|||+++..+|..
T Consensus 135 ~~g~ii~lvGptGvGKTTtiakLA~~ 160 (374)
T PRK14722 135 ERGGVFALMGPTGVGKTTTTAKLAAR 160 (374)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 44678999999999999999999976
No 403
>PTZ00202 tuzin; Provisional
Probab=96.70 E-value=0.064 Score=57.37 Aligned_cols=45 Identities=24% Similarity=0.375 Sum_probs=34.3
Q ss_pred HhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 146 KNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 146 k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
+..+.......|..+.|.||+|||||++++.+...++...+.++.
T Consensus 275 r~VL~~~d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNp 319 (550)
T PTZ00202 275 RQVLRRLDTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDV 319 (550)
T ss_pred HHHHhccCCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECC
Confidence 344433445567899999999999999999999998866555554
No 404
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=96.70 E-value=0.0029 Score=65.59 Aligned_cols=23 Identities=26% Similarity=0.421 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+++.|.||||||.+|-.+++++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 58899999999999999999997
No 405
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.69 E-value=0.0083 Score=65.30 Aligned_cols=82 Identities=10% Similarity=0.029 Sum_probs=52.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH-h---CCCcEEecccccccC---------C-----------------CC---
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK-M---GINPIMMSAGELESG---------N-----------------AG--- 199 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~-l---g~~~i~vs~s~l~s~---------~-----------------~G--- 199 (473)
|+.+...+||+|+||+|||+++..++.+ + |-+.++++..+-... | ..
T Consensus 27 G~p~Gs~~li~G~pGsGKT~l~~qf~~~~~~~~ge~~lyis~ee~~~~i~~~~~~~g~d~~~~~~~g~l~~~~~~~~~~~ 106 (509)
T PRK09302 27 GLPKGRPTLVSGTAGTGKTLFALQFLVNGIKRFDEPGVFVTFEESPEDIIRNVASFGWDLQKLIDEGKLFILDASPDPSE 106 (509)
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCEEEEEccCCHHHHHHHHHHcCCCHHHHhhCCeEEEEecCccccc
Confidence 5666788999999999999999987654 1 555555554221100 0 00
Q ss_pred ---ChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 200 ---EPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 200 ---e~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.....+..++.+..+.++..++..|+||-+..+..
T Consensus 107 ~~~~~~~~~~~l~~~l~~~i~~~~~~~vVIDSls~l~~ 144 (509)
T PRK09302 107 QEEAGEYDLEALFIRIEYAIDKIGAKRVVLDSIEALFS 144 (509)
T ss_pred ccccccccHHHHHHHHHHHHHhhCCCEEEECCHHHHHh
Confidence 00112344566666666688899999999987643
No 406
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.69 E-value=0.0017 Score=62.14 Aligned_cols=30 Identities=23% Similarity=0.111 Sum_probs=26.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
.|..+++.|+||+|||++|+.+|.++|..+
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 367899999999999999999999988754
No 407
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.68 E-value=0.011 Score=54.31 Aligned_cols=24 Identities=25% Similarity=0.149 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
|..+++.||.|+|||.+.++++-.
T Consensus 21 ~~~~~i~G~NgsGKS~~l~~i~~~ 44 (162)
T cd03227 21 GSLTIITGPNGSGKSTILDAIGLA 44 (162)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998655
No 408
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=96.67 E-value=0.0017 Score=55.47 Aligned_cols=24 Identities=17% Similarity=0.155 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+++++||+|+|||+++-.++.++.
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~ 25 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELL 25 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHH
Confidence 589999999999998888877753
No 409
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=96.67 E-value=0.0016 Score=71.30 Aligned_cols=166 Identities=16% Similarity=0.249 Sum_probs=100.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccc-----cCCCCChHHHHHHHHHHHH-HHHHcCCceEEEecCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELE-----SGNAGEPAKLIRQRYREAA-DIIKKGKMCCLFINDL 229 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~-----s~~~Ge~~~~ir~~f~~A~-~~~~~~~p~ILfIDEi 229 (473)
.-+|+.|.|||||-.++++|=+..+ -+|+-|++..+- ++++|-.+......+.+-. ..++......+|+|||
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 3589999999999999999988754 378888885432 2222221111111111100 0011233568999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-----
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW----- 304 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~----- 304 (473)
..+.- .++..|+..+.+.+-+.++|. ...-+|-||+||++.= ..|.+.|||-+-+|
T Consensus 417 gd~p~-------------~~Qs~LLrVl~e~~v~p~g~~---~~~vdirvi~ath~dl---~~lv~~g~fredLyyrL~~ 477 (606)
T COG3284 417 GDMPL-------------ALQSRLLRVLQEGVVTPLGGT---RIKVDIRVIAATHRDL---AQLVEQGRFREDLYYRLNA 477 (606)
T ss_pred hhchH-------------HHHHHHHHHHhhCceeccCCc---ceeEEEEEEeccCcCH---HHHHHcCCchHHHHHHhcC
Confidence 75532 234667777777777778876 3455788999998752 45788899865322
Q ss_pred ----cCCHHHH---HHHHHhhcCC-----CCCCHHHHHHHH-hcCCCCchh
Q 011983 305 ----APTREDR---IGVCSGIFRT-----DNVPKEDIVKLV-DTFPGQSID 342 (473)
Q Consensus 305 ----~P~~eeR---~~Il~~~l~~-----~~v~~~~l~~l~-~~~sga~l~ 342 (473)
+|...+| ..++..++.. ..++.+.++.|. -.+||..-+
T Consensus 478 ~~i~lP~lr~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNire 528 (606)
T COG3284 478 FVITLPPLRERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRE 528 (606)
T ss_pred eeeccCchhcccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHH
Confidence 4765555 4555555543 345666666554 456666544
No 410
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.67 E-value=0.0066 Score=57.61 Aligned_cols=39 Identities=18% Similarity=0.303 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
..|..+.|.|++|+|||+++++++..+ |...+.+++..+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 567899999999999999999999986 445566665443
No 411
>PRK14526 adenylate kinase; Provisional
Probab=96.67 E-value=0.0017 Score=62.75 Aligned_cols=34 Identities=24% Similarity=0.347 Sum_probs=27.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
.++|+||||+|||++++.+|+.+++.+ ++.+++.
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~--is~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYH--ISTGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCce--eecChHH
Confidence 378899999999999999999988654 4455543
No 412
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=96.67 E-value=0.0031 Score=65.04 Aligned_cols=103 Identities=16% Similarity=0.208 Sum_probs=66.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccc---------cCCCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 160 LGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
+||.|..||||-++|++.-.. ...+|+-++|..+- ..-.|..+ -..+|+.|. ..-+|+|
T Consensus 230 LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~aEsElFG~apg~~g--k~GffE~An-------gGTVlLD 300 (511)
T COG3283 230 LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDAAESELFGHAPGDEG--KKGFFEQAN-------GGTVLLD 300 (511)
T ss_pred eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhHhHHHHhcCCCCCCC--ccchhhhcc-------CCeEEee
Confidence 799999999999999987665 35689999986553 22233222 225666553 5678999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
||-.+.++ ++.-|+.++.+.+.-.+.+. .+..-+|.||+||..+
T Consensus 301 eIgEmSp~-------------lQaKLLRFL~DGtFRRVGee--~Ev~vdVRVIcatq~n 344 (511)
T COG3283 301 EIGEMSPR-------------LQAKLLRFLNDGTFRRVGED--HEVHVDVRVICATQVN 344 (511)
T ss_pred hhhhcCHH-------------HHHHHHHHhcCCceeecCCc--ceEEEEEEEEeccccc
Confidence 99766543 34556666664333332221 2334678999999664
No 413
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=96.66 E-value=0.014 Score=62.29 Aligned_cols=37 Identities=22% Similarity=0.367 Sum_probs=30.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
.+|..++|+||+|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 458899999999999999999998775 6666666653
No 414
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.66 E-value=0.0018 Score=59.09 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=26.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.|.|+|++|+|||++|+.+++.+|.+++.
T Consensus 2 iI~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 58899999999999999999999988654
No 415
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=96.66 E-value=0.014 Score=55.52 Aligned_cols=22 Identities=23% Similarity=0.193 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~ 179 (473)
+.++|.||.|+|||++.+.++.
T Consensus 29 ~~~~ltG~Ng~GKStll~~i~~ 50 (200)
T cd03280 29 RVLVITGPNAGGKTVTLKTLGL 50 (200)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 5799999999999999999983
No 416
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.64 E-value=0.014 Score=62.36 Aligned_cols=37 Identities=19% Similarity=0.266 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
..|..++|+|++|+|||+++..+|..+ |..+..+++.
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D 132 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAAD 132 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 468899999999999999999998875 5556656554
No 417
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.62 E-value=0.006 Score=56.44 Aligned_cols=37 Identities=16% Similarity=0.182 Sum_probs=29.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGE 192 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~ 192 (473)
.+..+.|.|+||+|||++++.++..+ |..+..++...
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~ 42 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDA 42 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcc
Confidence 45689999999999999999999987 43455565543
No 418
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=96.62 E-value=0.0032 Score=64.09 Aligned_cols=70 Identities=13% Similarity=0.230 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEeccc-ccc-------cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAG-ELE-------SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s-~l~-------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
..++|+.||+|+|||++++++++.+. ..++.+... ++. .-..+.....+..+++.+. +..|..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aL----R~~pD~ 207 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATL----RLRPDR 207 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHh----cCCCCE
Confidence 46799999999999999999998862 222222211 111 0001111113445556555 899999
Q ss_pred EEecCCC
Q 011983 224 LFINDLD 230 (473)
Q Consensus 224 LfIDEiD 230 (473)
|++.|+-
T Consensus 208 iivGEiR 214 (299)
T TIGR02782 208 IIVGEVR 214 (299)
T ss_pred EEEeccC
Confidence 9999984
No 419
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=96.61 E-value=0.009 Score=61.95 Aligned_cols=83 Identities=12% Similarity=0.125 Sum_probs=49.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEeccccccc---------CCCCCh-------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES---------GNAGEP------------- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s---------~~~Ge~------------- 201 (473)
|+.+-..++++|+||+|||.+|..+|-..- -..++++..+-++ .+--..
T Consensus 119 G~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl~qia~~~~~~~~~~l~~i~~~~~~ 198 (342)
T PLN03186 119 GIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRLIQIAERFGLNGADVLENVAYARAY 198 (342)
T ss_pred CCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHHHHHHHHcCCChhhhccceEEEecC
Confidence 456667888999999999999998874421 2456666543110 000000
Q ss_pred -HHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 202 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 202 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
...+..++..+..++....+.+|+||-|-+++..
T Consensus 199 ~~e~~~~ll~~~~~~~~~~~~~LIVIDSI~alfr~ 233 (342)
T PLN03186 199 NTDHQSELLLEAASMMAETRFALMIVDSATALYRT 233 (342)
T ss_pred CHHHHHHHHHHHHHHhhccCCCEEEEeCcHHHHHH
Confidence 1111223333333445678999999999988653
No 420
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.60 E-value=0.003 Score=49.84 Aligned_cols=31 Identities=26% Similarity=0.505 Sum_probs=24.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCCcEEecc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM-GINPIMMSA 190 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l-g~~~i~vs~ 190 (473)
+.+.|+||+|||++++++++.+ +.++..++.
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i~~ 33 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVLDE 33 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEEeE
Confidence 6788999999999999999996 344444443
No 421
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.59 E-value=0.0058 Score=54.95 Aligned_cols=30 Identities=20% Similarity=0.334 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
++...++|.|+.|+|||++++.+++.+|..
T Consensus 20 ~~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 20 DFGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 455689999999999999999999999865
No 422
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=96.58 E-value=0.0048 Score=58.07 Aligned_cols=71 Identities=18% Similarity=0.193 Sum_probs=42.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEeccc-ccccC-------------CCCChHHHHHHHHHHHHHHHHcC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAG-ELESG-------------NAGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s-~l~s~-------------~~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
....++|.||+|+|||++.++++..... ..+.+... ++... ..+.+...+.+.++.+. +.
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l----R~ 99 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSAL----RM 99 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHh----cc
Confidence 3467999999999999999999987532 12222111 11100 00111123344444444 78
Q ss_pred CceEEEecCCC
Q 011983 220 KMCCLFINDLD 230 (473)
Q Consensus 220 ~p~ILfIDEiD 230 (473)
.|.+|++.|+-
T Consensus 100 ~pd~i~igEir 110 (186)
T cd01130 100 RPDRIIVGEVR 110 (186)
T ss_pred CCCEEEEEccC
Confidence 89999999983
No 423
>PRK12338 hypothetical protein; Provisional
Probab=96.58 E-value=0.0021 Score=65.82 Aligned_cols=32 Identities=22% Similarity=0.317 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
..|..+++.|+||+|||++|+++|..+|+..+
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 35789999999999999999999999998653
No 424
>PRK13764 ATPase; Provisional
Probab=96.58 E-value=0.0033 Score=69.55 Aligned_cols=27 Identities=22% Similarity=0.094 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
...++|++||||+|||+++++++..+.
T Consensus 256 ~~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 256 RAEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 356899999999999999999998864
No 425
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.56 E-value=0.0023 Score=59.28 Aligned_cols=28 Identities=18% Similarity=0.306 Sum_probs=25.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+.|..|+|.|+||+|||++++.+++.+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 5678999999999999999999999975
No 426
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.56 E-value=0.0025 Score=64.17 Aligned_cols=73 Identities=15% Similarity=0.293 Sum_probs=51.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH------hCCCcEEecccccccCCCCChH-----HHHHHHHHHHH----HHHHcCCce
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK------MGINPIMMSAGELESGNAGEPA-----KLIRQRYREAA----DIIKKGKMC 222 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~------lg~~~i~vs~s~l~s~~~Ge~~-----~~ir~~f~~A~----~~~~~~~p~ 222 (473)
.-+||.||.|.|||+||+.|..- +.-.|+.++|..|.. .+. ..++..|.-|. .+++.....
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg----d~amsalfghvkgaftga~~~r~gllrsadgg 284 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG----DTAMSALFGHVKGAFTGARESREGLLRSADGG 284 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC----chHHHHHHhhhccccccchhhhhhhhccCCCc
Confidence 34899999999999999999764 566899999988863 322 12333333222 244456678
Q ss_pred EEEecCCCCccc
Q 011983 223 CLFINDLDAGAG 234 (473)
Q Consensus 223 ILfIDEiDal~~ 234 (473)
.||+|||..+..
T Consensus 285 mlfldeigelga 296 (531)
T COG4650 285 MLFLDEIGELGA 296 (531)
T ss_pred eEehHhhhhcCc
Confidence 999999987653
No 427
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.56 E-value=0.0049 Score=57.54 Aligned_cols=24 Identities=25% Similarity=0.194 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-.+|+||||+|||+++-.++..+
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHH
Confidence 358899999999999999888873
No 428
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.55 E-value=0.0098 Score=59.71 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
+.|+.++|.||||+|||+++..+|..+ |..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 567899999999999999998888764 5455445443
No 429
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.53 E-value=0.018 Score=55.39 Aligned_cols=26 Identities=19% Similarity=-0.031 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+....++|.||.|+|||++.+.++.-
T Consensus 27 ~~~~~~~l~G~n~~GKstll~~i~~~ 52 (204)
T cd03282 27 GSSRFHIITGPNMSGKSTYLKQIALL 52 (204)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 34477999999999999999999743
No 430
>PRK13975 thymidylate kinase; Provisional
Probab=96.52 E-value=0.0044 Score=58.14 Aligned_cols=28 Identities=25% Similarity=0.228 Sum_probs=25.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
+.|.|.|++|+|||++++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 5688999999999999999999998643
No 431
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.51 E-value=0.001 Score=63.92 Aligned_cols=22 Identities=23% Similarity=0.300 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l 181 (473)
++++|+||+|||++++.++...
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999999985
No 432
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.49 E-value=0.0038 Score=59.58 Aligned_cols=37 Identities=30% Similarity=0.638 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC-CCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG-INPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg-~~~i~vs~s 191 (473)
..|..|.|.||+|+|||+|++.|++.++ ..+..++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 4678999999999999999999999984 233344443
No 433
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=96.49 E-value=0.011 Score=60.60 Aligned_cols=82 Identities=17% Similarity=0.229 Sum_probs=49.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh------C---CCcEEecccccccC--------CCCC-hH------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM------G---INPIMMSAGELESG--------NAGE-PA------------ 202 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l------g---~~~i~vs~s~l~s~--------~~Ge-~~------------ 202 (473)
|+.+-..+.++||||+|||++|..+|... | -..++++..+.++. -.|. ..
T Consensus 92 Gi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~Rl~~ia~~~~~~~~~~l~~i~~~~~~ 171 (316)
T TIGR02239 92 GIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPERLLAIAERYGLNPEDVLDNVAYARAY 171 (316)
T ss_pred CCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHHHHHHHHHcCCChHHhhccEEEEecC
Confidence 56667889999999999999999888632 1 24456655432111 0000 00
Q ss_pred --HHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 203 --KLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 203 --~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..+..+...+...+....+.+|+||-|-+++.
T Consensus 172 ~~~~~~~~l~~~~~~~~~~~~~LvVIDSI~al~r 205 (316)
T TIGR02239 172 NTDHQLQLLQQAAAMMSESRFALLIVDSATALYR 205 (316)
T ss_pred ChHHHHHHHHHHHHhhccCCccEEEEECcHHHhh
Confidence 01112233333334466789999999998864
No 434
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=96.49 E-value=0.0051 Score=63.50 Aligned_cols=71 Identities=14% Similarity=0.151 Sum_probs=45.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEec-cccccc-----------C--CCCChHHHHHHHHHHHHHHHHcC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELES-----------G--NAGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs-~s~l~s-----------~--~~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
..+.+|+.||+|+|||++.+++.....- .++.+- ..++.- . -.|...-.+..+++.+. +.
T Consensus 159 ~~~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~L----R~ 234 (332)
T PRK13900 159 SKKNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACL----RL 234 (332)
T ss_pred cCCcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHh----cc
Confidence 4567999999999999999999998642 222221 111110 0 01222223455666665 89
Q ss_pred CceEEEecCCC
Q 011983 220 KMCCLFINDLD 230 (473)
Q Consensus 220 ~p~ILfIDEiD 230 (473)
.|..|++.|+-
T Consensus 235 ~PD~IivGEiR 245 (332)
T PRK13900 235 RPDRIIVGELR 245 (332)
T ss_pred CCCeEEEEecC
Confidence 99999999985
No 435
>PRK14529 adenylate kinase; Provisional
Probab=96.49 E-value=0.0024 Score=62.36 Aligned_cols=36 Identities=28% Similarity=0.381 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG 196 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~ 196 (473)
.|+|.||||+|||++++.|++.++++. ++.+++...
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~--is~gdllr~ 37 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAH--IESGAIFRE 37 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCC--cccchhhhh
Confidence 378899999999999999999998765 455555533
No 436
>PRK10867 signal recognition particle protein; Provisional
Probab=96.48 E-value=0.022 Score=60.88 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s 191 (473)
.+|..+++.||+|+|||+++-.+|..+ |..+..+++.
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D 138 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAAD 138 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcc
Confidence 468999999999999999877777653 6666666664
No 437
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.46 E-value=0.0039 Score=61.90 Aligned_cols=71 Identities=13% Similarity=0.116 Sum_probs=42.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCC---cEEec-ccccccCCCC-------ChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGIN---PIMMS-AGELESGNAG-------EPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~---~i~vs-~s~l~s~~~G-------e~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
.-..+++.||+|+|||++.+++..++... ++.+. ..++.-.... .......++++.+. +..|.+|
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~L----R~~pD~i 201 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSAL----RQDPDVI 201 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHT----TS--SEE
T ss_pred cceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHh----cCCCCcc
Confidence 34689999999999999999999986443 22222 1122111100 11223445555555 8889999
Q ss_pred EecCCC
Q 011983 225 FINDLD 230 (473)
Q Consensus 225 fIDEiD 230 (473)
+|.|+-
T Consensus 202 iigEiR 207 (270)
T PF00437_consen 202 IIGEIR 207 (270)
T ss_dssp EESCE-
T ss_pred cccccC
Confidence 999984
No 438
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=96.46 E-value=0.0056 Score=62.99 Aligned_cols=36 Identities=25% Similarity=0.231 Sum_probs=30.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
...+.|.|+||+|||+|++.+++..+.+++.-.+-+
T Consensus 162 ~~~~~~~G~~~~gkstl~~~l~~~~~~~~v~E~~R~ 197 (325)
T TIGR01526 162 VKTVAILGGESTGKSTLVNKLAAVFNTTSAWEYARE 197 (325)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCCEEeehhHH
Confidence 357899999999999999999999998886555443
No 439
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.45 E-value=0.014 Score=55.26 Aligned_cols=28 Identities=21% Similarity=0.317 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
++...++|.||+|+|||+|++.++....
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 3557899999999999999999999875
No 440
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.43 E-value=0.0053 Score=62.59 Aligned_cols=72 Identities=14% Similarity=0.134 Sum_probs=44.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEec-ccccccC----------C--CCChHHHHHHHHHHHHHHHHcC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMS-AGELESG----------N--AGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs-~s~l~s~----------~--~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
+....+++.||+|+|||+++++++..+.. ..+.+. ..++.-. . .+...-.+.+++..+. +.
T Consensus 142 ~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~L----r~ 217 (308)
T TIGR02788 142 ASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCL----RM 217 (308)
T ss_pred hCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHh----cC
Confidence 44578999999999999999999988532 111211 1111100 0 0111123445555555 88
Q ss_pred CceEEEecCCC
Q 011983 220 KMCCLFINDLD 230 (473)
Q Consensus 220 ~p~ILfIDEiD 230 (473)
.|.+|++||+-
T Consensus 218 ~pd~ii~gE~r 228 (308)
T TIGR02788 218 RPDRIILGELR 228 (308)
T ss_pred CCCeEEEeccC
Confidence 99999999985
No 441
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.43 E-value=0.08 Score=61.05 Aligned_cols=35 Identities=17% Similarity=-0.058 Sum_probs=27.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
...+.++++||+|.|||+++...+...+ ++..++.
T Consensus 30 ~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 30 NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 3456799999999999999999888766 5544443
No 442
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=96.43 E-value=0.0015 Score=71.16 Aligned_cols=138 Identities=16% Similarity=0.248 Sum_probs=74.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHH-----HHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLI-----RQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~i-----r~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
-..+||+|-||||||-+.|.+++-....++..-.+ +.-+|-+.... +++--+|-.+. -....|-+|||+|+
T Consensus 482 DinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqG---ASavGLTa~v~KdPvtrEWTLEaGALV-LADkGvClIDEFDK 557 (854)
T KOG0477|consen 482 DINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQG---ASAVGLTAYVRKDPVTREWTLEAGALV-LADKGVCLIDEFDK 557 (854)
T ss_pred ceeEEEecCCCccHHHHHHHHHhcCcceeEeccCC---ccccceeEEEeeCCccceeeeccCeEE-EccCceEEeehhhh
Confidence 35799999999999999999999865554432211 11122221110 11111111011 12234678999998
Q ss_pred ccccCCCCCccchh-------hHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----------C--CCcc
Q 011983 232 GAGRMGGTTQYTVN-------NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----------S--TLYA 291 (473)
Q Consensus 232 l~~~r~~~~~~~~~-------~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----------~--~Ld~ 291 (473)
+-......-...++ ...+..+| ..++.||+|+|.. + .|-.
T Consensus 558 MndqDRtSIHEAMEQQSISISKAGIVtsL--------------------qArctvIAAanPigGRY~~s~tFaqNV~lte 617 (854)
T KOG0477|consen 558 MNDQDRTSIHEAMEQQSISISKAGIVTSL--------------------QARCTVIAAANPIGGRYNPSLTFAQNVDLTE 617 (854)
T ss_pred hcccccchHHHHHHhcchhhhhhhHHHHH--------------------HhhhhhheecCCCCCccCCccchhhcccccc
Confidence 85431100000111 11122223 2456789998862 1 5678
Q ss_pred ccccCCCceEEEe----c-CCHHHHHH--HHHhhcC
Q 011983 292 PLIRDGRMEKFYW----A-PTREDRIG--VCSGIFR 320 (473)
Q Consensus 292 aLlR~GRfd~~i~----~-P~~eeR~~--Il~~~l~ 320 (473)
++++ |||..-. + |-.+++.. ++..+.+
T Consensus 618 PIlS--RFDiLcVvkD~vd~~~De~lA~fVV~Sh~r 651 (854)
T KOG0477|consen 618 PILS--RFDILCVVKDTVDPVQDEKLAKFVVGSHVR 651 (854)
T ss_pred chhh--hcceeeeeecccCchhHHHHHHHHHHhHhh
Confidence 8899 9998655 2 76666653 4445544
No 443
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.41 E-value=0.017 Score=55.94 Aligned_cols=22 Identities=36% Similarity=0.152 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~ 179 (473)
..++|.||.|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 6789999999999999999974
No 444
>PRK05439 pantothenate kinase; Provisional
Probab=96.37 E-value=0.0054 Score=62.72 Aligned_cols=39 Identities=36% Similarity=0.503 Sum_probs=32.4
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..+.|+.....+.|..|++.|+||+|||++|+.++..++
T Consensus 73 ~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~ 111 (311)
T PRK05439 73 ALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLS 111 (311)
T ss_pred HHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 445566655667899999999999999999999998764
No 445
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.33 E-value=0.0067 Score=64.21 Aligned_cols=32 Identities=19% Similarity=0.217 Sum_probs=27.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..+.|.|.|++|||||+|++++|+..|...+.
T Consensus 218 ~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 218 FVRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 45679999999999999999999998887543
No 446
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=96.33 E-value=0.0055 Score=63.03 Aligned_cols=70 Identities=14% Similarity=0.222 Sum_probs=44.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEec-ccccccC------CCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELESG------NAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs-~s~l~s~------~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
..++|+.|++|+|||++.++++.... ..++.+- ..++.-. +.....-.+..+++.+. +..|..|
T Consensus 144 ~~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aL----R~~PD~I 219 (323)
T PRK13833 144 RLNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTM----RLRPDRI 219 (323)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHh----CCCCCEE
Confidence 45799999999999999999998852 2233322 1222210 00111123445555555 8999999
Q ss_pred EecCCC
Q 011983 225 FINDLD 230 (473)
Q Consensus 225 fIDEiD 230 (473)
++.|+-
T Consensus 220 ivGEiR 225 (323)
T PRK13833 220 IVGEVR 225 (323)
T ss_pred EEeecC
Confidence 999983
No 447
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.33 E-value=0.0044 Score=62.98 Aligned_cols=32 Identities=31% Similarity=0.432 Sum_probs=29.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
.+.|..+++.|++|||||++|..+|+.+|.+.
T Consensus 89 ~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 89 SKEPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35789999999999999999999999998873
No 448
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=96.32 E-value=0.0062 Score=61.74 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=31.1
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..+.|+.....+.|..+.|.||+|+||||+|+.+...+.
T Consensus 49 ~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 49 VLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred HHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 344556555567899999999999999999999877753
No 449
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.30 E-value=0.02 Score=53.28 Aligned_cols=28 Identities=25% Similarity=0.367 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+.+...+.|.||.|+|||+|++.++...
T Consensus 25 i~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 25 LKQGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 3455689999999999999999999874
No 450
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.30 E-value=0.016 Score=62.89 Aligned_cols=38 Identities=11% Similarity=0.130 Sum_probs=30.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~----lg~~~i~vs~ 190 (473)
|+.+...+|+.||||||||++|..++.+ .|-+.++++.
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~ 58 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTF 58 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEE
Confidence 5677789999999999999999988543 2566666654
No 451
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.29 E-value=0.019 Score=62.19 Aligned_cols=82 Identities=17% Similarity=0.105 Sum_probs=50.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC------CCCC-hHH-----------------HH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------NAGE-PAK-----------------LI 205 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~------~~Ge-~~~-----------------~i 205 (473)
|+.+...+|+.||||+|||+++-.++.+. |-+.++++..+-... -.|- .+. .+
T Consensus 259 G~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~~ 338 (484)
T TIGR02655 259 GFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAGL 338 (484)
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCCh
Confidence 56677899999999999999999888863 556666665332111 0110 000 01
Q ss_pred HHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 206 RQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 206 r~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
........+.++...|.+|+||-+-.+..
T Consensus 339 ~~~~~~i~~~i~~~~~~~vvIDsi~~~~~ 367 (484)
T TIGR02655 339 EDHLQIIKSEIADFKPARIAIDSLSALAR 367 (484)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 12223333344477899999999887643
No 452
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.29 E-value=0.039 Score=58.23 Aligned_cols=27 Identities=19% Similarity=0.124 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..|..++|+||+|+|||+++..+|..+
T Consensus 172 ~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 172 LKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 357899999999999999999998764
No 453
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.27 E-value=0.018 Score=51.66 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
+.|.||+|+|||++++.+++.....
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 5788999999999999999986543
No 454
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=96.27 E-value=0.018 Score=56.89 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-.+-|.||+|||||||.+.||.-
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL 52 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGL 52 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46778899999999999999986
No 455
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.26 E-value=0.0065 Score=62.43 Aligned_cols=71 Identities=11% Similarity=0.195 Sum_probs=44.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEec-cccccc------CCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMS-AGELES------GNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs-~s~l~s------~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
....+++.||+|+|||+++++++.+.- ..++.+. ..++.- .+....+..+.++++.+. +..|..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aL----R~~PD~ 222 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTL----RMRPDR 222 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHh----cCCCCE
Confidence 346899999999999999999998731 1222211 122210 000111223456666666 899999
Q ss_pred EEecCCC
Q 011983 224 LFINDLD 230 (473)
Q Consensus 224 LfIDEiD 230 (473)
|++.|+-
T Consensus 223 IivGEiR 229 (319)
T PRK13894 223 ILVGEVR 229 (319)
T ss_pred EEEeccC
Confidence 9999984
No 456
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.26 E-value=0.029 Score=54.75 Aligned_cols=21 Identities=19% Similarity=0.097 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 011983 160 LGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~ 180 (473)
-+|+||||+|||+|+-.+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 478899999999999999875
No 457
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.22 E-value=0.015 Score=55.04 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+.++|.||+|+|||++++++-+..
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4678899999999999999999986
No 458
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=96.21 E-value=0.011 Score=53.27 Aligned_cols=74 Identities=14% Similarity=0.144 Sum_probs=42.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc--EEecccccccCCCC-Ch-HHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--IMMSAGELESGNAG-EP-AKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~--i~vs~s~l~s~~~G-e~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
++-..+.|.||.|+|||+|.++++......- +.++... .-.|+- -+ ...-|-.+.+|. ...|.++++||-.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~-~i~~~~~lS~G~~~rv~laral----~~~p~illlDEP~ 98 (144)
T cd03221 24 NPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTV-KIGYFEQLSGGEKMRLALAKLL----LENPNLLLLDEPT 98 (144)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeE-EEEEEccCCHHHHHHHHHHHHH----hcCCCEEEEeCCc
Confidence 4456889999999999999999998743210 1111100 000111 11 111112233333 6789999999976
Q ss_pred Ccc
Q 011983 231 AGA 233 (473)
Q Consensus 231 al~ 233 (473)
...
T Consensus 99 ~~L 101 (144)
T cd03221 99 NHL 101 (144)
T ss_pred cCC
Confidence 544
No 459
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.21 E-value=0.0091 Score=59.67 Aligned_cols=72 Identities=13% Similarity=0.167 Sum_probs=41.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecc-cccccCCCCChH--HHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG---INPIMMSA-GELESGNAGEPA--KLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~-s~l~s~~~Ge~~--~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
.+++.||+|+|||++.+++...+. ..++.+.. .++.-..+-+.+ .....-|..+...+-+..|.+|+|+|+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~~v~~~~~~~~~~~l~~~lR~~PD~i~vgEiR 159 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQVQVNEKAGLTFARGLRAILRQDPDIIMVGEIR 159 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEEEeCCcCCcCHHHHHHHHhccCCCEEEeccCC
Confidence 589999999999999999987763 23333321 122111100000 0001123333333338899999999984
No 460
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=96.21 E-value=0.0078 Score=59.87 Aligned_cols=83 Identities=16% Similarity=0.211 Sum_probs=49.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEeccccccc---------CCCCChH------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES---------GNAGEPA------------ 202 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s---------~~~Ge~~------------ 202 (473)
|+..-...=|+||||+|||.+|-.+|-.. +...++++...-++ .+--+.+
T Consensus 34 Gi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~~~~~~l~~I~v~~~~ 113 (256)
T PF08423_consen 34 GIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGLDPEEILDNIFVIRVF 113 (256)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-HHHHHHTEEEEE-S
T ss_pred CCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhccccccchhhhceeeeecC
Confidence 45555667799999999999999888663 23356665432111 1110111
Q ss_pred --HHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 203 --KLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 203 --~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
..+..+.......+...+-.+|+||-|-+++..
T Consensus 114 ~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaalfr~ 148 (256)
T PF08423_consen 114 DLEELLELLEQLPKLLSESKIKLIVIDSIAALFRS 148 (256)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSHHHHH
T ss_pred CHHHHHHHHHHHHhhccccceEEEEecchHHHHHH
Confidence 111222333333344677899999999998753
No 461
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.02 Score=52.85 Aligned_cols=28 Identities=29% Similarity=0.316 Sum_probs=24.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+.+-..+.|.||+|+|||+|.+.++...
T Consensus 25 i~~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 25 IKPGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred EcCCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 3455689999999999999999999984
No 462
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.20 E-value=0.017 Score=53.43 Aligned_cols=27 Identities=22% Similarity=0.454 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||+|.+.++...
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 344578999999999999999999863
No 463
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.17 E-value=0.005 Score=57.57 Aligned_cols=32 Identities=38% Similarity=0.634 Sum_probs=26.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|+|+|+||+|||++++.+++ +|++++ ++.++.
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i--~~D~~~ 33 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVI--DADKIA 33 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEE--ecCHHH
Confidence 78999999999999999999 787654 444444
No 464
>PRK08356 hypothetical protein; Provisional
Probab=96.17 E-value=0.0056 Score=57.98 Aligned_cols=32 Identities=22% Similarity=0.399 Sum_probs=25.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
+.++|+||||+|||++|+.+. +.|+. .++.++
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~--~is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFC--RVSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCc--EEeCCC
Confidence 568899999999999999995 46665 455554
No 465
>PRK13808 adenylate kinase; Provisional
Probab=96.17 E-value=0.0046 Score=63.80 Aligned_cols=33 Identities=30% Similarity=0.498 Sum_probs=27.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
|+|+||||+|||++|+.||+.+|+.. ++.++++
T Consensus 3 Iiv~GpPGSGK~T~a~~LA~~ygl~~--is~gdlL 35 (333)
T PRK13808 3 LILLGPPGAGKGTQAQRLVQQYGIVQ--LSTGDML 35 (333)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCce--ecccHHH
Confidence 78899999999999999999998744 4545444
No 466
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=96.16 E-value=0.011 Score=64.60 Aligned_cols=59 Identities=24% Similarity=0.388 Sum_probs=40.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
..|..++++|+||+|||++|+.++...|.. .++...+ |. .......|.+.++.+.+.||
T Consensus 367 ~~p~LVil~G~pGSGKST~A~~l~~~~g~~--~vn~D~l-----g~----~~~~~~~a~~~L~~G~sVVI 425 (526)
T TIGR01663 367 APCEMVIAVGFPGAGKSHFCKKFFQPAGYK--HVNADTL-----GS----TQNCLTACERALDQGKRCAI 425 (526)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHcCCe--EECcHHH-----HH----HHHHHHHHHHHHhCCCcEEE
Confidence 567899999999999999999999987654 4454443 11 22334455555656666443
No 467
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.15 E-value=0.016 Score=58.40 Aligned_cols=38 Identities=16% Similarity=0.285 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----C-CCcEEecccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----G-INPIMMSAGE 192 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----g-~~~i~vs~s~ 192 (473)
..+..++|.||+|+|||+++..+|..+ | ..+..++...
T Consensus 192 ~~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 192 EQGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 356789999999999999999998764 4 5555555543
No 468
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=96.15 E-value=0.025 Score=61.58 Aligned_cols=82 Identities=18% Similarity=0.134 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC------CCC-----------------Ch-HHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG------NAG-----------------EP-AKLI 205 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~------~~G-----------------e~-~~~i 205 (473)
|+.....++++||||+|||+++..++.+ .|-+.++++..+-... -.| .+ ...+
T Consensus 269 G~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~~~~~i~~~~~~~g~~~~~~~~~g~l~i~~~~~~~~~~ 348 (509)
T PRK09302 269 GFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEESRAQLIRNARSWGIDLEKMEEKGLLKIICARPESYGL 348 (509)
T ss_pred CCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecCCHHHHHHHHHHcCCChHHHhhcCCceeecCCcccCCH
Confidence 5666778999999999999999988865 3666666654321100 000 00 0011
Q ss_pred HHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 206 RQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 206 r~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
...+....+.++..++.+|+||-+..+..
T Consensus 349 ~~~~~~i~~~i~~~~~~~vVIDslt~l~~ 377 (509)
T PRK09302 349 EDHLIIIKREIEEFKPSRVAIDPLSALAR 377 (509)
T ss_pred HHHHHHHHHHHHHcCCCEEEEcCHHHHHH
Confidence 22333333444577899999999988754
No 469
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.14 E-value=0.0081 Score=62.35 Aligned_cols=72 Identities=15% Similarity=0.154 Sum_probs=45.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecc-cccccC------------CCCChHHHHHHHHHHHHHHHHcC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-GELESG------------NAGEPAKLIRQRYREAADIIKKG 219 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~-s~l~s~------------~~Ge~~~~ir~~f~~A~~~~~~~ 219 (473)
+.-+.+|+.||+|+|||+++++++..... ..+.+.. .++.-. ..|...-....+++.+. +.
T Consensus 160 ~~~~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~L----R~ 235 (344)
T PRK13851 160 VGRLTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASL----RM 235 (344)
T ss_pred HcCCeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHh----cC
Confidence 34567999999999999999999998543 2222111 111100 01111223445566665 88
Q ss_pred CceEEEecCCC
Q 011983 220 KMCCLFINDLD 230 (473)
Q Consensus 220 ~p~ILfIDEiD 230 (473)
.|..|++.|+-
T Consensus 236 ~pD~IivGEiR 246 (344)
T PRK13851 236 RPDRILLGEMR 246 (344)
T ss_pred CCCeEEEEeeC
Confidence 99999999984
No 470
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.13 E-value=0.052 Score=52.90 Aligned_cols=25 Identities=24% Similarity=-0.051 Sum_probs=21.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
.....++|.||.|+|||++.+.++.
T Consensus 29 ~~g~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 29 EGGYCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3446789999999999999999988
No 471
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.13 E-value=0.0051 Score=58.15 Aligned_cols=25 Identities=28% Similarity=0.414 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
.|.|.||+|+|||++|+.|+..++.
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~ 25 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNK 25 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCc
Confidence 4789999999999999999999873
No 472
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.12 E-value=0.0064 Score=58.84 Aligned_cols=40 Identities=20% Similarity=0.115 Sum_probs=30.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGN 197 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~ 197 (473)
+.++|+||+|||||.+|-++|++.|.++|..+.-.+....
T Consensus 2 ~v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l 41 (233)
T PF01745_consen 2 KVYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPEL 41 (233)
T ss_dssp EEEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGG
T ss_pred cEEEEECCCCCChhHHHHHHHHHhCCCEEEecceeccccc
Confidence 3578999999999999999999999999998876665443
No 473
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.09 E-value=0.051 Score=50.28 Aligned_cols=27 Identities=30% Similarity=0.386 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||+|.+.++...
T Consensus 26 ~~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 26 EPGESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcc
Confidence 344578999999999999999999874
No 474
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.08 E-value=0.015 Score=54.43 Aligned_cols=25 Identities=16% Similarity=0.161 Sum_probs=22.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++.++|.||+|+||+++++.++++.
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcC
Confidence 3568999999999999999999985
No 475
>PLN02199 shikimate kinase
Probab=96.08 E-value=0.0066 Score=61.57 Aligned_cols=33 Identities=18% Similarity=0.127 Sum_probs=29.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
...|+|.|++|+|||++++.+|+.+|++|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 457889999999999999999999999997655
No 476
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.07 E-value=0.024 Score=58.23 Aligned_cols=36 Identities=22% Similarity=0.363 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
..|..++|.||+|+|||+++..+|..+ |..+..+.+
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 457899999999999999999999874 444444443
No 477
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.06 E-value=0.0064 Score=57.93 Aligned_cols=34 Identities=26% Similarity=0.344 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
.|.|+|++|+|||++++.+++.+|.+++ ++.++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i--~~D~~~ 36 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPIL--DADIYA 36 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEe--eCcHHH
Confidence 5899999999999999999998888776 444443
No 478
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=96.06 E-value=0.003 Score=67.27 Aligned_cols=24 Identities=21% Similarity=0.151 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-+++||+||||||||++|+.+..-
T Consensus 198 gHnLl~~GpPGtGKTmla~Rl~~l 221 (490)
T COG0606 198 GHNLLLVGPPGTGKTMLASRLPGL 221 (490)
T ss_pred CCcEEEecCCCCchHHhhhhhccc
Confidence 368999999999999999988765
No 479
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.05 E-value=0.05 Score=58.11 Aligned_cols=37 Identities=22% Similarity=0.431 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s 191 (473)
.+|..+++.||||+|||++|-.+|..+ |..+..+++.
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D 137 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACD 137 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecc
Confidence 458899999999999999988777663 5566666654
No 480
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.05 E-value=0.0054 Score=57.57 Aligned_cols=29 Identities=14% Similarity=0.175 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
..+.|.||+|+|||++++.++...+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 36889999999999999999998876543
No 481
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=96.03 E-value=0.0067 Score=58.41 Aligned_cols=33 Identities=27% Similarity=0.396 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..|..|.|+|++|||||++++.+++++|.+++.
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vid 36 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVC 36 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 346789999999999999999999999988654
No 482
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.03 E-value=0.01 Score=56.32 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++|+.|++|+|||++.+.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 79999999999999999887773
No 483
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=96.00 E-value=0.0081 Score=60.72 Aligned_cols=57 Identities=19% Similarity=0.186 Sum_probs=47.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAA 213 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~ 213 (473)
.-+.+|+.|+||||||.+|-.+++.+| .||..++++++.+--...++ .+.+.|+++.
T Consensus 65 aGraiLiaG~pgtGKtAiAmg~sksLG~~tpF~~i~gSEI~SlEmsKTE-AltQAfRksi 123 (454)
T KOG2680|consen 65 AGRAILIAGQPGTGKTAIAMGMSKSLGDDTPFTSISGSEIYSLEMSKTE-ALTQAFRKSI 123 (454)
T ss_pred cceEEEEecCCCCCceeeeeehhhhhCCCCceeeeecceeeeecccHHH-HHHHHHHHhh
Confidence 457899999999999999999999998 49999999999875555544 4567788765
No 484
>COG0645 Predicted kinase [General function prediction only]
Probab=95.99 E-value=0.019 Score=53.58 Aligned_cols=71 Identities=20% Similarity=0.193 Sum_probs=47.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCC---------------ChHHHHHHHHHHHHHHHHcCCce
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAG---------------EPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~G---------------e~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+|++|-||+|||++|+.+++.+|.-.+..+. +.....| .+.+.-..++..|..+++.+.+.
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~lrsD~--irk~L~g~p~~~r~~~g~ys~~~~~~vy~~l~~~A~l~l~~G~~V 79 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIRLRSDV--IRKRLFGVPEETRGPAGLYSPAATAAVYDELLGRAELLLSSGHSV 79 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceEEehHH--HHHHhcCCcccccCCCCCCcHHHHHHHHHHHHHHHHHHHhCCCcE
Confidence 468999999999999999999999886554332 2211222 23344456777777777777776
Q ss_pred EEEecCCCCcccc
Q 011983 223 CLFINDLDAGAGR 235 (473)
Q Consensus 223 ILfIDEiDal~~~ 235 (473)
|+ |+.+.+
T Consensus 80 Vl-----Da~~~r 87 (170)
T COG0645 80 VL-----DATFDR 87 (170)
T ss_pred EE-----ecccCC
Confidence 65 555543
No 485
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=95.98 E-value=0.0077 Score=58.47 Aligned_cols=30 Identities=33% Similarity=0.467 Sum_probs=26.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
+..+.|.||+|+|||++++.+|+++++.++
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~ 31 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYL 31 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 356889999999999999999999998765
No 486
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=95.98 E-value=0.0064 Score=56.35 Aligned_cols=25 Identities=20% Similarity=0.296 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
.++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 5789999999999999999998754
No 487
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=95.97 E-value=0.0063 Score=57.80 Aligned_cols=27 Identities=26% Similarity=0.314 Sum_probs=23.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh-CCCcE
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM-GINPI 186 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l-g~~~i 186 (473)
|.+.|+||+|||++|+.+++.+ ++.++
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i 29 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVI 29 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEE
Confidence 6789999999999999999998 44443
No 488
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=95.97 E-value=0.0053 Score=56.79 Aligned_cols=26 Identities=27% Similarity=0.296 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
+.++|.||+|+|||++++.+++....
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcc
Confidence 46889999999999999999997654
No 489
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=95.96 E-value=0.0069 Score=57.87 Aligned_cols=27 Identities=33% Similarity=0.722 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
....+.|.||+|+||||++++++..++
T Consensus 5 ~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 5 KGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 446788999999999999999999876
No 490
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.93 E-value=0.0076 Score=58.73 Aligned_cols=31 Identities=23% Similarity=0.445 Sum_probs=27.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+..|.+.||||+|||++++.+|+++|++++.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~ 34 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLD 34 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4678999999999999999999999988754
No 491
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=95.93 E-value=0.0083 Score=56.30 Aligned_cols=35 Identities=26% Similarity=0.469 Sum_probs=27.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 194 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~ 194 (473)
|++.|+||+|||++|+.+++.++ .+...++..++.
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~ 39 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYY 39 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhcc
Confidence 78999999999999999999973 455555555443
No 492
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=95.90 E-value=0.031 Score=56.75 Aligned_cols=68 Identities=18% Similarity=0.147 Sum_probs=43.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.+..+.++|+|+.|+|||++.+.|.+-+|-..+.+..+...... +.. .|..|. -..--++++||++.-
T Consensus 73 ~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~~~~~~~~~~~~-~~~------~f~~a~----l~gk~l~~~~E~~~~ 140 (304)
T TIGR01613 73 YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYATTAVASLKMNEF-QEH------RFGLAR----LEGKRAVIGDEVQKG 140 (304)
T ss_pred CCceEEEEEECCCCCcHHHHHHHHHHHhChhhccCCcchhhhhc-cCC------Cchhhh----hcCCEEEEecCCCCC
Confidence 45678999999999999999999999888765443333222221 110 233332 233457778998743
No 493
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=95.89 E-value=0.012 Score=66.46 Aligned_cols=27 Identities=30% Similarity=0.460 Sum_probs=22.8
Q ss_pred CCCCcE--EEEEcCCCCcHHHHHHHHHHH
Q 011983 154 VKVPLI--LGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 154 ~~~p~g--lLL~GPPGtGKT~lAkaIA~~ 180 (473)
...|.| +.+.|+.|||||||+|.+..-
T Consensus 494 L~I~~Ge~vaIvG~SGsGKSTL~KLL~gl 522 (709)
T COG2274 494 LEIPPGEKVAIVGRSGSGKSTLLKLLLGL 522 (709)
T ss_pred EEeCCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 344445 999999999999999999886
No 494
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=95.89 E-value=0.082 Score=49.97 Aligned_cols=28 Identities=25% Similarity=0.252 Sum_probs=24.3
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+.+...+.|.||+|+|||+|.+.|+...
T Consensus 32 i~~Ge~~~l~G~nGsGKStLl~~i~Gl~ 59 (194)
T cd03213 32 AKPGELTAIMGPSGAGKSTLLNALAGRR 59 (194)
T ss_pred EcCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3455689999999999999999999875
No 495
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=95.88 E-value=0.0091 Score=61.04 Aligned_cols=35 Identities=17% Similarity=0.176 Sum_probs=29.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
.|+.++|.||+|+|||++|..+|++++..++..+.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds 37 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEIISADS 37 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcEEeccc
Confidence 35689999999999999999999999887665544
No 496
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=95.83 E-value=0.0099 Score=62.04 Aligned_cols=40 Identities=18% Similarity=0.248 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC---CcEEecccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELE 194 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~---~~i~vs~s~l~ 194 (473)
..|..+.+.||.|||||++.++|.+.+.. .++.+..+.+.
T Consensus 20 ~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~A 62 (364)
T PF05970_consen 20 EEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIA 62 (364)
T ss_pred cCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHH
Confidence 46778999999999999999999888633 34444443333
No 497
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=95.81 E-value=0.038 Score=56.09 Aligned_cols=28 Identities=29% Similarity=0.262 Sum_probs=24.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
...+..+.|.||||+|||+++..++..+
T Consensus 31 ~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 31 TGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred cCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999998874
No 498
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=95.81 E-value=0.017 Score=60.39 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=22.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..++++||+|+|||++.+++++.+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999886
No 499
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=95.80 E-value=0.028 Score=62.93 Aligned_cols=71 Identities=18% Similarity=0.205 Sum_probs=45.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCC---C----hHHHHHHHHHHHHHHHHcCCceEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAG---E----PAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~G---e----~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
..|..++++|.||+|||++|+++++.+ +...+.++...+.....+ - ....++.+...|..++ ....++
T Consensus 458 ~~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~~~~~~~~r~~~~~~l~~~a~~~~--~~G~~V 535 (632)
T PRK05506 458 QKPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRDLGFSDADRVENIRRVAEVARLMA--DAGLIV 535 (632)
T ss_pred CCcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCCCCCCHHHHHHHHHHHHHHHHHHH--hCCCEE
Confidence 468899999999999999999999996 456677776655432221 1 2234444444443232 334566
Q ss_pred Eec
Q 011983 225 FIN 227 (473)
Q Consensus 225 fID 227 (473)
++|
T Consensus 536 ivd 538 (632)
T PRK05506 536 LVS 538 (632)
T ss_pred EEE
Confidence 666
No 500
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=95.80 E-value=0.032 Score=52.52 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=45.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC---CCCCh----HHHHHHHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEP----AKLIRQRYREAADI 215 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~---~~Ge~----~~~ir~~f~~A~~~ 215 (473)
...|..|.|.|.+|+|||++|.++.+. .|.+.+.+++..+... -.|-+ ..+||.+-.-|+.+
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~dLgFs~edR~eniRRvaevAkll 91 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNRDLGFSREDRIENIRRVAEVAKLL 91 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccCCCCCChHHHHHHHHHHHHHHHHH
Confidence 467889999999999999999999998 5889999998776533 23332 24566665555533
Done!