Query 011983
Match_columns 473
No_of_seqs 408 out of 2952
Neff 6.5
Searched_HMMs 29240
Date Mon Mar 25 19:17:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011983.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011983hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3t15_A Ribulose bisphosphate c 100.0 3.2E-50 1.1E-54 402.1 26.1 293 122-414 1-293 (293)
2 4b4t_J 26S protease regulatory 100.0 3.4E-39 1.2E-43 334.7 17.4 189 152-357 177-371 (405)
3 4b4t_L 26S protease subunit RP 100.0 3.3E-38 1.1E-42 331.3 17.3 189 152-357 210-404 (437)
4 4b4t_I 26S protease regulatory 100.0 2.1E-38 7.2E-43 330.2 15.5 188 152-357 211-405 (437)
5 4b4t_H 26S protease regulatory 100.0 7.8E-38 2.7E-42 328.6 19.0 190 152-358 238-433 (467)
6 4b4t_M 26S protease regulatory 100.0 5E-38 1.7E-42 329.6 16.7 190 152-358 210-405 (434)
7 4b4t_K 26S protease regulatory 100.0 6.9E-37 2.4E-41 320.6 15.4 188 152-357 201-396 (428)
8 3cf2_A TER ATPase, transitiona 100.0 1.6E-36 5.5E-41 338.5 8.1 248 152-418 506-765 (806)
9 3cf2_A TER ATPase, transitiona 100.0 1.6E-32 5.4E-37 306.4 19.1 221 123-363 203-430 (806)
10 1xwi_A SKD1 protein; VPS4B, AA 100.0 3.7E-29 1.3E-33 252.9 20.7 243 153-416 41-319 (322)
11 3eie_A Vacuolar protein sortin 100.0 6.5E-29 2.2E-33 250.4 18.8 244 153-417 47-319 (322)
12 3cf0_A Transitional endoplasmi 100.0 1.7E-28 5.9E-33 245.3 19.0 244 153-415 45-300 (301)
13 2qp9_X Vacuolar protein sortin 100.0 2.5E-28 8.4E-33 250.1 17.0 244 153-417 80-352 (355)
14 2x8a_A Nuclear valosin-contain 100.0 5.6E-28 1.9E-32 239.3 16.4 190 152-361 39-239 (274)
15 2zan_A Vacuolar protein sortin 99.9 2.8E-27 9.7E-32 249.2 17.3 242 154-416 164-441 (444)
16 2ce7_A Cell division protein F 99.9 5.4E-27 1.8E-31 249.1 16.7 184 152-354 44-235 (476)
17 2qz4_A Paraplegin; AAA+, SPG7, 99.9 2.9E-26 9.8E-31 221.7 13.5 174 153-342 35-219 (262)
18 3h4m_A Proteasome-activating n 99.9 7.8E-26 2.7E-30 222.2 16.5 185 153-354 47-237 (285)
19 1lv7_A FTSH; alpha/beta domain 99.9 2.5E-25 8.4E-30 216.2 19.3 174 153-342 41-222 (257)
20 2dhr_A FTSH; AAA+ protein, hex 99.9 1.8E-25 6E-30 238.7 14.8 182 152-352 59-248 (499)
21 3hu3_A Transitional endoplasmi 99.9 4.5E-25 1.5E-29 235.3 17.6 188 153-360 234-427 (489)
22 3d8b_A Fidgetin-like protein 1 99.9 3.7E-25 1.3E-29 226.4 15.6 230 155-416 115-354 (357)
23 1ypw_A Transitional endoplasmi 99.9 3.5E-27 1.2E-31 265.2 -1.6 192 153-362 507-705 (806)
24 3vfd_A Spastin; ATPase, microt 99.9 8.7E-25 3E-29 225.7 15.5 230 155-416 146-385 (389)
25 3b9p_A CG5977-PA, isoform A; A 99.9 2.2E-24 7.5E-29 213.3 16.9 230 155-415 52-291 (297)
26 1ixz_A ATP-dependent metallopr 99.9 4.8E-24 1.6E-28 206.7 14.3 174 153-342 45-226 (254)
27 2r62_A Cell division protease 99.9 2.9E-25 9.8E-30 216.5 1.6 175 153-342 40-223 (268)
28 1iy2_A ATP-dependent metallopr 99.9 7.1E-23 2.4E-27 201.6 15.1 174 153-342 69-250 (278)
29 3thg_A Ribulose bisphosphate c 99.9 5.6E-22 1.9E-26 165.7 11.0 103 306-408 5-107 (107)
30 1ypw_A Transitional endoplasmi 99.9 6.2E-21 2.1E-25 214.5 20.3 215 123-357 203-424 (806)
31 2c9o_A RUVB-like 1; hexameric 99.8 3.4E-22 1.2E-26 210.9 -4.3 154 153-319 59-239 (456)
32 3syl_A Protein CBBX; photosynt 99.8 5.2E-18 1.8E-22 168.0 18.4 156 153-334 63-234 (309)
33 1d2n_A N-ethylmaleimide-sensit 99.8 8.8E-19 3E-23 171.4 12.2 165 152-338 59-228 (272)
34 3m6a_A ATP-dependent protease 99.8 8.7E-18 3E-22 181.2 16.6 189 156-360 107-320 (543)
35 1ofh_A ATP-dependent HSL prote 99.7 1.9E-16 6.6E-21 155.9 12.9 157 155-317 48-213 (310)
36 1g41_A Heat shock protein HSLU 99.7 4.1E-17 1.4E-21 171.5 6.5 135 155-315 48-188 (444)
37 3hws_A ATP-dependent CLP prote 99.6 1E-16 3.6E-21 163.5 5.1 160 155-317 49-267 (363)
38 1jbk_A CLPB protein; beta barr 99.6 1.8E-16 6.2E-21 143.4 6.0 136 155-315 41-194 (195)
39 3uk6_A RUVB-like 2; hexameric 99.6 4.1E-15 1.4E-19 150.7 14.9 153 155-335 68-290 (368)
40 3pfi_A Holliday junction ATP-d 99.6 2E-14 6.9E-19 144.2 17.5 158 155-339 53-219 (338)
41 4fcw_A Chaperone protein CLPB; 99.6 1.7E-14 5.8E-19 142.6 16.4 206 133-362 22-285 (311)
42 3u61_B DNA polymerase accessor 99.6 1.1E-14 3.6E-19 145.6 13.2 148 155-336 46-205 (324)
43 3te6_A Regulatory protein SIR3 99.6 1.2E-14 4.2E-19 146.7 12.5 137 155-320 43-212 (318)
44 3pxg_A Negative regulator of g 99.6 1.8E-14 6E-19 152.6 14.1 143 156-339 200-367 (468)
45 3pvs_A Replication-associated 99.6 3E-14 1E-18 150.2 15.5 144 158-338 51-206 (447)
46 1um8_A ATP-dependent CLP prote 99.5 2.4E-14 8.2E-19 146.5 12.4 105 155-259 70-177 (376)
47 2p65_A Hypothetical protein PF 99.5 9.2E-15 3.1E-19 132.2 8.2 125 155-304 41-182 (187)
48 3pxi_A Negative regulator of g 99.5 1.1E-13 3.7E-18 154.5 18.5 155 155-334 518-701 (758)
49 1r6b_X CLPA protein; AAA+, N-t 99.5 5.7E-14 1.9E-18 156.5 15.0 158 156-334 487-692 (758)
50 1hqc_A RUVB; extended AAA-ATPa 99.5 7.1E-14 2.4E-18 138.9 13.1 158 155-338 36-202 (324)
51 1l8q_A Chromosomal replication 99.5 5.8E-14 2E-18 140.5 11.6 162 145-336 26-198 (324)
52 1qvr_A CLPB protein; coiled co 99.5 4.2E-14 1.4E-18 159.9 11.5 157 156-338 190-373 (854)
53 1r6b_X CLPA protein; AAA+, N-t 99.5 1.3E-13 4.3E-18 153.7 14.6 141 155-320 205-363 (758)
54 2chg_A Replication factor C sm 99.5 7.4E-13 2.5E-17 122.2 16.6 144 159-336 40-193 (226)
55 3pxi_A Negative regulator of g 99.5 1.8E-13 6.1E-18 152.7 14.4 126 155-321 199-340 (758)
56 1sxj_A Activator 1 95 kDa subu 99.4 1.4E-13 4.9E-18 147.2 9.6 154 156-338 76-243 (516)
57 2qby_B CDC6 homolog 3, cell di 99.4 9E-13 3.1E-17 133.6 14.0 146 155-333 43-228 (384)
58 2z4s_A Chromosomal replication 99.4 2.6E-13 8.8E-18 142.6 10.1 154 157-339 130-298 (440)
59 1njg_A DNA polymerase III subu 99.4 2.6E-12 8.9E-17 119.7 15.8 154 155-336 43-217 (250)
60 2v1u_A Cell division control p 99.4 7.9E-13 2.7E-17 133.4 12.1 152 155-332 42-231 (387)
61 1qvr_A CLPB protein; coiled co 99.4 2.5E-12 8.4E-17 145.5 16.0 186 156-362 587-826 (854)
62 2chq_A Replication factor C sm 99.4 1.8E-12 6.1E-17 127.7 13.1 148 156-338 38-195 (319)
63 1sxj_D Activator 1 41 kDa subu 99.3 5.3E-12 1.8E-16 126.5 13.4 144 160-337 61-225 (353)
64 1a5t_A Delta prime, HOLB; zinc 99.3 1.6E-11 5.5E-16 124.0 15.0 147 155-335 22-193 (334)
65 1iqp_A RFCS; clamp loader, ext 99.3 8.5E-12 2.9E-16 123.3 12.1 144 159-336 48-201 (327)
66 3bos_A Putative DNA replicatio 99.3 2.3E-11 7.8E-16 114.4 14.5 145 156-338 51-208 (242)
67 1sxj_B Activator 1 37 kDa subu 99.3 1.3E-11 4.5E-16 121.7 12.0 147 155-336 41-198 (323)
68 1jr3_A DNA polymerase III subu 99.3 2.8E-11 9.7E-16 122.1 14.4 150 155-338 36-212 (373)
69 2r44_A Uncharacterized protein 99.3 6.1E-12 2.1E-16 126.0 9.4 142 158-321 47-200 (331)
70 1sxj_E Activator 1 40 kDa subu 99.3 4.4E-11 1.5E-15 120.3 15.7 147 155-335 35-225 (354)
71 2qby_A CDC6 homolog 1, cell di 99.3 4.2E-11 1.4E-15 120.5 14.9 153 155-333 43-228 (386)
72 1in4_A RUVB, holliday junction 99.3 8.4E-11 2.9E-15 118.7 16.6 158 155-339 49-215 (334)
73 1g8p_A Magnesium-chelatase 38 99.3 1.4E-12 4.7E-17 130.8 2.8 143 158-319 46-232 (350)
74 3n70_A Transport activator; si 99.2 9E-12 3.1E-16 110.7 7.2 91 156-286 23-116 (145)
75 1fnn_A CDC6P, cell division co 99.2 6.5E-11 2.2E-15 119.7 14.3 152 158-336 45-227 (389)
76 1ojl_A Transcriptional regulat 99.2 1.4E-11 4.7E-16 123.2 9.2 156 155-335 23-215 (304)
77 2bjv_A PSP operon transcriptio 99.2 1E-11 3.4E-16 120.6 7.2 154 157-334 29-219 (265)
78 1sxj_C Activator 1 40 kDa subu 99.2 1.1E-10 3.7E-15 117.7 13.9 143 155-332 45-197 (340)
79 3co5_A Putative two-component 99.2 2.7E-12 9.1E-17 114.0 1.3 90 157-286 27-116 (143)
80 4akg_A Glutathione S-transfera 99.2 2E-11 6.7E-16 150.7 8.5 143 157-320 1267-1432(2695)
81 3f9v_A Minichromosome maintena 99.2 5E-12 1.7E-16 137.7 2.9 139 158-321 328-492 (595)
82 3nbx_X ATPase RAVA; AAA+ ATPas 99.2 1.7E-11 6E-16 130.8 5.5 139 158-319 42-196 (500)
83 2gno_A DNA polymerase III, gam 99.1 2.6E-10 8.8E-15 114.3 12.1 129 157-319 18-152 (305)
84 3ec2_A DNA replication protein 99.1 9.1E-10 3.1E-14 100.5 12.1 86 139-232 20-112 (180)
85 3cmw_A Protein RECA, recombina 99.0 2.1E-10 7.1E-15 136.5 6.1 114 156-286 1079-1218(1706)
86 2vhj_A Ntpase P4, P4; non- hyd 98.9 1.7E-09 6E-14 109.0 7.1 121 154-293 120-242 (331)
87 1w5s_A Origin recognition comp 98.8 1.3E-08 4.6E-13 103.6 11.9 158 156-335 49-248 (412)
88 2w58_A DNAI, primosome compone 98.8 2.2E-08 7.5E-13 92.7 11.9 72 156-233 53-128 (202)
89 2kjq_A DNAA-related protein; s 98.8 7.8E-09 2.7E-13 92.7 7.2 59 156-233 35-96 (149)
90 2r2a_A Uncharacterized protein 98.8 1.3E-08 4.5E-13 95.9 7.8 126 156-305 4-150 (199)
91 1tue_A Replication protein E1; 98.7 4E-08 1.4E-12 93.2 8.0 126 144-304 47-176 (212)
92 1svm_A Large T antigen; AAA+ f 98.6 4.6E-08 1.6E-12 100.8 8.8 118 153-307 165-284 (377)
93 2qgz_A Helicase loader, putati 98.6 3.1E-08 1.1E-12 99.1 6.7 83 144-232 139-226 (308)
94 3k1j_A LON protease, ATP-depen 98.5 1.7E-07 5.9E-12 101.9 10.3 102 219-336 200-327 (604)
95 4akg_A Glutathione S-transfera 98.5 5.5E-07 1.9E-11 111.6 12.5 141 157-316 645-790 (2695)
96 3cmu_A Protein RECA, recombina 98.4 3.8E-07 1.3E-11 110.1 8.2 102 153-258 1423-1548(2050)
97 2qen_A Walker-type ATPase; unk 98.4 2.9E-06 9.9E-11 83.9 13.1 154 158-335 32-234 (350)
98 3vkg_A Dynein heavy chain, cyt 98.3 3.2E-07 1.1E-11 114.5 5.9 141 158-319 1305-1469(3245)
99 2fna_A Conserved hypothetical 98.3 6.3E-06 2.2E-10 81.5 14.2 35 158-192 31-65 (357)
100 1u0j_A DNA replication protein 98.3 2.3E-06 7.8E-11 84.1 10.6 42 141-183 89-130 (267)
101 1ye8_A Protein THEP1, hypothet 98.1 5.9E-06 2E-10 76.0 8.5 27 159-185 2-28 (178)
102 2cvh_A DNA repair and recombin 98.1 8.6E-06 2.9E-10 75.5 9.7 81 153-234 16-119 (220)
103 1ny5_A Transcriptional regulat 98.1 1.3E-06 4.5E-11 89.9 3.8 106 158-286 161-282 (387)
104 3dzd_A Transcriptional regulat 98.1 3.3E-06 1.1E-10 86.4 5.9 128 158-311 153-304 (368)
105 3f8t_A Predicted ATPase involv 98.0 9.7E-07 3.3E-11 93.1 0.1 126 158-311 240-386 (506)
106 1n0w_A DNA repair protein RAD5 97.9 1.1E-05 3.7E-10 76.0 6.7 83 153-235 20-134 (243)
107 1qhx_A CPT, protein (chloramph 97.9 1.6E-05 5.6E-10 71.4 6.8 35 157-191 3-37 (178)
108 3vkg_A Dynein heavy chain, cyt 97.9 5.6E-05 1.9E-09 94.9 12.8 140 158-316 605-750 (3245)
109 3cmu_A Protein RECA, recombina 97.8 3.5E-05 1.2E-09 93.3 9.3 82 153-234 728-824 (2050)
110 1jr3_D DNA polymerase III, del 97.8 0.00021 7.3E-09 71.4 13.2 147 155-338 16-176 (343)
111 3hr8_A Protein RECA; alpha and 97.8 6.5E-05 2.2E-09 76.7 9.2 82 153-234 57-153 (356)
112 2w0m_A SSO2452; RECA, SSPF, un 97.7 4.9E-05 1.7E-09 70.6 7.3 28 153-180 19-46 (235)
113 2zr9_A Protein RECA, recombina 97.7 2.5E-05 8.5E-10 79.5 5.3 82 153-234 57-153 (349)
114 1xp8_A RECA protein, recombina 97.7 0.00011 3.7E-09 75.3 10.0 82 153-234 70-166 (366)
115 2p5t_B PEZT; postsegregational 97.7 0.00018 6.1E-09 69.2 10.7 41 153-193 28-68 (253)
116 1gvn_B Zeta; postsegregational 97.7 7.8E-05 2.7E-09 73.6 7.9 62 134-195 9-71 (287)
117 4a74_A DNA repair and recombin 97.7 7.8E-05 2.7E-09 69.3 7.4 29 153-181 21-49 (231)
118 3trf_A Shikimate kinase, SK; a 97.7 3.1E-05 1.1E-09 70.2 4.5 34 156-189 4-37 (185)
119 3cmw_A Protein RECA, recombina 97.6 7.7E-05 2.6E-09 89.3 8.7 82 153-234 728-824 (1706)
120 2ehv_A Hypothetical protein PH 97.6 0.00018 6.3E-09 67.7 9.6 26 153-178 26-51 (251)
121 2rhm_A Putative kinase; P-loop 97.6 4.2E-05 1.4E-09 69.4 4.9 34 154-187 2-35 (193)
122 2z43_A DNA repair and recombin 97.6 0.00011 3.9E-09 73.4 8.1 82 153-234 103-217 (324)
123 1u94_A RECA protein, recombina 97.6 9.6E-05 3.3E-09 75.4 7.5 82 153-234 59-155 (356)
124 3a4m_A L-seryl-tRNA(SEC) kinas 97.6 0.00017 5.7E-09 69.8 8.6 70 156-228 3-79 (260)
125 1v5w_A DMC1, meiotic recombina 97.6 7.6E-05 2.6E-09 75.5 6.2 82 153-234 118-233 (343)
126 1pzn_A RAD51, DNA repair and r 97.5 0.00031 1.1E-08 71.2 10.3 82 153-234 127-245 (349)
127 2zts_A Putative uncharacterize 97.5 0.00025 8.5E-09 66.6 9.0 38 153-190 26-67 (251)
128 3iij_A Coilin-interacting nucl 97.5 5.7E-05 2E-09 68.2 4.4 34 155-188 9-42 (180)
129 3umf_A Adenylate kinase; rossm 97.5 6E-05 2.1E-09 71.7 4.3 41 152-194 24-64 (217)
130 3vaa_A Shikimate kinase, SK; s 97.5 6.7E-05 2.3E-09 69.3 4.6 35 155-189 23-57 (199)
131 2cdn_A Adenylate kinase; phosp 97.5 8.4E-05 2.9E-09 68.5 5.0 35 154-188 17-51 (201)
132 2dr3_A UPF0273 protein PH0284; 97.5 0.00066 2.3E-08 63.6 10.9 38 153-190 19-59 (247)
133 3io5_A Recombination and repai 97.4 0.00013 4.3E-09 73.5 6.1 77 159-235 30-126 (333)
134 2iyv_A Shikimate kinase, SK; t 97.4 7E-05 2.4E-09 67.8 3.9 32 158-189 3-34 (184)
135 1tev_A UMP-CMP kinase; ploop, 97.4 7.6E-05 2.6E-09 67.5 4.0 31 157-187 3-33 (196)
136 2c95_A Adenylate kinase 1; tra 97.4 9.2E-05 3.1E-09 67.3 4.2 34 156-189 8-41 (196)
137 3kb2_A SPBC2 prophage-derived 97.4 0.00011 3.9E-09 65.1 4.7 32 158-189 2-33 (173)
138 2b8t_A Thymidine kinase; deoxy 97.4 0.00033 1.1E-08 66.9 8.1 74 158-232 13-101 (223)
139 2orw_A Thymidine kinase; TMTK, 97.4 7.4E-05 2.5E-09 68.9 3.4 31 158-188 4-37 (184)
140 3kw6_A 26S protease regulatory 97.4 0.00029 9.8E-09 55.8 6.3 51 305-358 2-56 (78)
141 1aky_A Adenylate kinase; ATP:A 97.4 0.0001 3.4E-09 69.0 4.2 34 155-188 2-35 (220)
142 1qf9_A UMP/CMP kinase, protein 97.4 0.00012 4.2E-09 65.9 4.6 34 155-188 4-37 (194)
143 1g41_A Heat shock protein HSLU 97.4 0.00074 2.5E-08 70.8 10.9 90 221-316 251-346 (444)
144 1zuh_A Shikimate kinase; alpha 97.4 0.00012 4E-09 65.4 4.2 33 157-189 7-39 (168)
145 1y63_A LMAJ004144AAA protein; 97.4 0.0001 3.5E-09 67.3 3.9 34 156-189 9-43 (184)
146 1g5t_A COB(I)alamin adenosyltr 97.3 0.0003 1E-08 65.9 6.9 118 159-304 30-176 (196)
147 3t61_A Gluconokinase; PSI-biol 97.3 0.00015 5.1E-09 66.8 4.6 33 155-187 16-48 (202)
148 3lda_A DNA repair protein RAD5 97.3 0.00044 1.5E-08 71.6 8.5 82 153-234 174-287 (400)
149 2bwj_A Adenylate kinase 5; pho 97.3 0.00013 4.4E-09 66.5 3.9 33 156-188 11-43 (199)
150 1ukz_A Uridylate kinase; trans 97.3 0.00014 4.7E-09 66.9 4.2 35 155-189 13-47 (203)
151 2r6a_A DNAB helicase, replicat 97.3 0.00063 2.2E-08 71.2 9.6 38 153-190 199-240 (454)
152 1kag_A SKI, shikimate kinase I 97.3 0.00015 5E-09 64.8 4.1 31 157-187 4-34 (173)
153 3lw7_A Adenylate kinase relate 97.3 0.00013 4.5E-09 64.3 3.7 30 158-188 2-31 (179)
154 1via_A Shikimate kinase; struc 97.3 0.00012 4.3E-09 65.8 3.6 29 159-187 6-34 (175)
155 3cm0_A Adenylate kinase; ATP-b 97.3 0.00011 3.8E-09 66.4 3.2 31 157-187 4-34 (186)
156 1ly1_A Polynucleotide kinase; 97.3 0.00011 3.8E-09 65.6 3.1 29 157-185 2-31 (181)
157 1zd8_A GTP:AMP phosphotransfer 97.3 0.00014 4.8E-09 68.4 3.8 34 155-188 5-38 (227)
158 2vli_A Antibiotic resistance p 97.3 0.00012 4.2E-09 65.8 3.2 31 156-186 4-34 (183)
159 3tlx_A Adenylate kinase 2; str 97.3 0.00017 5.7E-09 69.2 4.3 34 155-188 27-60 (243)
160 1kht_A Adenylate kinase; phosp 97.3 0.00013 4.6E-09 65.7 3.3 26 157-182 3-28 (192)
161 1e6c_A Shikimate kinase; phosp 97.2 0.00016 5.5E-09 64.4 3.6 31 158-188 3-33 (173)
162 2i1q_A DNA repair and recombin 97.2 0.00049 1.7E-08 68.4 7.2 82 153-234 94-218 (322)
163 1zp6_A Hypothetical protein AT 97.2 0.00017 5.9E-09 65.4 3.6 39 154-192 6-44 (191)
164 1ak2_A Adenylate kinase isoenz 97.2 0.00021 7.2E-09 67.7 4.3 34 155-188 14-47 (233)
165 2q6t_A DNAB replication FORK h 97.2 0.001 3.6E-08 69.3 9.9 39 152-190 195-237 (444)
166 1zak_A Adenylate kinase; ATP:A 97.2 0.00015 5E-09 68.0 2.9 32 156-187 4-35 (222)
167 2pt5_A Shikimate kinase, SK; a 97.2 0.00026 9E-09 62.8 4.3 30 159-188 2-31 (168)
168 3be4_A Adenylate kinase; malar 97.2 0.0002 6.7E-09 67.1 3.6 32 157-188 5-36 (217)
169 2ze6_A Isopentenyl transferase 97.1 0.00029 9.9E-09 68.0 4.7 33 158-190 2-34 (253)
170 2a5y_B CED-4; apoptosis; HET: 97.1 0.0037 1.3E-07 66.8 13.7 25 155-179 150-174 (549)
171 3dl0_A Adenylate kinase; phosp 97.1 0.00027 9.2E-09 65.7 4.2 30 159-188 2-31 (216)
172 3fb4_A Adenylate kinase; psych 97.1 0.00029 9.9E-09 65.4 4.3 30 159-188 2-31 (216)
173 3sr0_A Adenylate kinase; phosp 97.1 0.00027 9.3E-09 66.5 4.1 33 159-193 2-34 (206)
174 1knq_A Gluconate kinase; ALFA/ 97.1 0.00041 1.4E-08 62.1 4.6 32 156-187 7-38 (175)
175 1cr0_A DNA primase/helicase; R 97.1 0.00086 2.9E-08 65.6 7.1 29 153-181 31-59 (296)
176 2krk_A 26S protease regulatory 97.0 0.00038 1.3E-08 56.5 3.7 51 305-358 10-64 (86)
177 4eun_A Thermoresistant glucoki 97.0 0.00043 1.5E-08 63.8 4.6 37 155-193 27-63 (200)
178 3sfz_A APAF-1, apoptotic pepti 97.0 0.0076 2.6E-07 69.2 15.5 26 155-180 145-170 (1249)
179 2pez_A Bifunctional 3'-phospho 97.0 0.00059 2E-08 61.5 4.9 39 155-193 3-44 (179)
180 3uie_A Adenylyl-sulfate kinase 97.0 0.0017 5.7E-08 59.8 8.0 39 155-193 23-64 (200)
181 1z6t_A APAF-1, apoptotic prote 97.0 0.0032 1.1E-07 67.3 11.3 25 155-179 145-169 (591)
182 1e4v_A Adenylate kinase; trans 97.0 0.00048 1.6E-08 64.1 4.2 30 159-188 2-31 (214)
183 2pbr_A DTMP kinase, thymidylat 97.0 0.00064 2.2E-08 61.3 4.8 31 159-189 2-35 (195)
184 1nlf_A Regulatory protein REPA 96.9 0.0033 1.1E-07 61.0 10.2 28 153-180 26-53 (279)
185 1cke_A CK, MSSA, protein (cyti 96.9 0.0006 2E-08 63.5 4.7 31 157-187 5-35 (227)
186 2yvu_A Probable adenylyl-sulfa 96.9 0.0025 8.5E-08 57.7 8.7 39 155-193 11-52 (186)
187 2v54_A DTMP kinase, thymidylat 96.9 0.00047 1.6E-08 63.0 3.8 34 156-189 3-37 (204)
188 1uf9_A TT1252 protein; P-loop, 96.9 0.00052 1.8E-08 62.6 4.0 34 155-189 6-39 (203)
189 2bbw_A Adenylate kinase 4, AK4 96.9 0.00071 2.4E-08 64.4 5.0 32 156-187 26-57 (246)
190 2wwf_A Thymidilate kinase, put 96.9 0.00035 1.2E-08 64.3 2.7 34 155-188 8-41 (212)
191 2ga8_A Hypothetical 39.9 kDa p 96.9 0.00043 1.5E-08 70.6 3.5 30 158-187 25-54 (359)
192 1nn5_A Similar to deoxythymidy 96.9 0.00043 1.5E-08 63.7 3.0 32 155-186 7-38 (215)
193 2z0h_A DTMP kinase, thymidylat 96.9 0.0015 5E-08 59.2 6.5 31 159-189 2-35 (197)
194 1uj2_A Uridine-cytidine kinase 96.9 0.00073 2.5E-08 64.7 4.5 40 155-194 20-67 (252)
195 1jjv_A Dephospho-COA kinase; P 96.8 0.00062 2.1E-08 62.7 3.7 29 158-187 3-31 (206)
196 2plr_A DTMP kinase, probable t 96.8 0.00078 2.7E-08 61.6 4.3 28 157-184 4-31 (213)
197 1nks_A Adenylate kinase; therm 96.8 0.00046 1.6E-08 62.1 2.7 25 158-182 2-26 (194)
198 3r20_A Cytidylate kinase; stru 96.8 0.00077 2.6E-08 64.7 4.4 33 155-187 7-39 (233)
199 3dm5_A SRP54, signal recogniti 96.8 0.0068 2.3E-07 63.5 11.9 71 156-230 99-192 (443)
200 2jaq_A Deoxyguanosine kinase; 96.8 0.00072 2.5E-08 61.5 4.1 29 159-187 2-30 (205)
201 2if2_A Dephospho-COA kinase; a 96.8 0.00063 2.2E-08 62.4 3.6 30 159-189 3-32 (204)
202 3ake_A Cytidylate kinase; CMP 96.8 0.00089 3E-08 61.2 4.6 31 159-189 4-34 (208)
203 2xb4_A Adenylate kinase; ATP-b 96.8 0.00074 2.5E-08 63.5 4.0 30 159-188 2-31 (223)
204 1m7g_A Adenylylsulfate kinase; 96.8 0.002 7E-08 59.7 6.9 40 155-194 23-66 (211)
205 3crm_A TRNA delta(2)-isopenten 96.8 0.00081 2.8E-08 67.7 4.4 36 156-191 4-39 (323)
206 1vma_A Cell division protein F 96.8 0.0073 2.5E-07 60.1 11.2 72 155-230 102-196 (306)
207 3bh0_A DNAB-like replicative h 96.8 0.0028 9.5E-08 63.1 8.1 38 153-190 64-104 (315)
208 3tau_A Guanylate kinase, GMP k 96.7 0.0014 4.9E-08 60.9 5.4 28 155-182 6-33 (208)
209 2qt1_A Nicotinamide riboside k 96.7 0.0008 2.7E-08 62.1 3.4 35 153-187 17-52 (207)
210 3zvl_A Bifunctional polynucleo 96.7 0.0011 3.8E-08 68.7 4.7 37 155-193 256-292 (416)
211 1vht_A Dephospho-COA kinase; s 96.7 0.0011 3.6E-08 61.8 4.1 32 156-188 3-34 (218)
212 2axn_A 6-phosphofructo-2-kinas 96.7 0.0018 6E-08 69.3 6.3 31 155-185 33-63 (520)
213 3bgw_A DNAB-like replicative h 96.7 0.0047 1.6E-07 64.6 9.5 38 153-190 193-233 (444)
214 1q57_A DNA primase/helicase; d 96.7 0.0067 2.3E-07 64.1 10.7 38 153-190 238-279 (503)
215 2iut_A DNA translocase FTSK; n 96.7 0.013 4.4E-07 63.2 12.9 72 222-316 345-420 (574)
216 2h92_A Cytidylate kinase; ross 96.6 0.001 3.4E-08 61.8 3.6 32 157-188 3-34 (219)
217 2fz4_A DNA repair protein RAD2 96.6 0.0038 1.3E-07 59.4 7.8 33 159-191 110-142 (237)
218 4gp7_A Metallophosphoesterase; 96.6 0.0021 7.3E-08 57.8 5.7 22 155-176 7-28 (171)
219 3jvv_A Twitching mobility prot 96.6 0.0018 6.2E-08 65.9 5.6 69 158-230 124-206 (356)
220 2grj_A Dephospho-COA kinase; T 96.6 0.0013 4.3E-08 61.1 3.9 33 157-189 12-44 (192)
221 2r8r_A Sensor protein; KDPD, P 96.6 0.018 6.2E-07 55.0 12.0 34 157-190 6-42 (228)
222 2eyu_A Twitching motility prot 96.6 0.00084 2.9E-08 65.3 2.7 72 155-230 23-108 (261)
223 1rz3_A Hypothetical protein rb 96.6 0.0035 1.2E-07 57.8 6.8 49 136-189 6-57 (201)
224 2f6r_A COA synthase, bifunctio 96.6 0.0013 4.4E-08 64.4 4.0 33 155-188 73-105 (281)
225 1ltq_A Polynucleotide kinase; 96.6 0.00098 3.4E-08 65.0 3.1 30 157-186 2-32 (301)
226 1q3t_A Cytidylate kinase; nucl 96.5 0.0019 6.5E-08 61.1 4.8 34 154-187 13-46 (236)
227 3a8t_A Adenylate isopentenyltr 96.5 0.0043 1.5E-07 62.7 7.5 36 155-190 38-73 (339)
228 4e22_A Cytidylate kinase; P-lo 96.5 0.002 6.9E-08 61.8 4.6 32 156-187 26-57 (252)
229 4a1f_A DNAB helicase, replicat 96.5 0.0025 8.7E-08 64.4 5.4 38 153-190 42-82 (338)
230 3nwj_A ATSK2; P loop, shikimat 96.4 0.0016 5.4E-08 63.1 3.7 32 158-189 49-80 (250)
231 3ney_A 55 kDa erythrocyte memb 96.4 0.0034 1.2E-07 58.7 5.6 27 156-182 18-44 (197)
232 2qor_A Guanylate kinase; phosp 96.4 0.002 6.7E-08 59.5 3.7 28 155-182 10-37 (204)
233 3vlf_B 26S protease regulatory 96.3 0.0044 1.5E-07 50.2 5.2 49 307-358 2-54 (88)
234 3kl4_A SRP54, signal recogniti 96.3 0.013 4.4E-07 61.2 9.9 36 155-190 95-133 (433)
235 2j41_A Guanylate kinase; GMP, 96.3 0.0025 8.6E-08 58.1 4.1 27 155-181 4-30 (207)
236 3foz_A TRNA delta(2)-isopenten 96.2 0.0034 1.2E-07 62.8 4.9 36 155-190 8-43 (316)
237 3asz_A Uridine kinase; cytidin 96.2 0.0027 9.1E-08 58.5 3.7 32 155-186 4-37 (211)
238 2ewv_A Twitching motility prot 96.2 0.0018 6E-08 66.2 2.5 27 155-181 134-160 (372)
239 1x6v_B Bifunctional 3'-phospho 96.1 0.011 3.8E-07 64.5 8.8 38 156-193 51-91 (630)
240 3c8u_A Fructokinase; YP_612366 96.1 0.006 2E-07 56.4 5.7 29 154-182 19-47 (208)
241 3tqc_A Pantothenate kinase; bi 96.1 0.0074 2.5E-07 60.6 6.6 39 144-182 79-117 (321)
242 3gmt_A Adenylate kinase; ssgci 96.1 0.0032 1.1E-07 60.4 3.7 30 158-187 9-38 (230)
243 3fdi_A Uncharacterized protein 96.0 0.0048 1.6E-07 57.4 4.5 30 158-187 7-36 (201)
244 2j37_W Signal recognition part 96.0 0.032 1.1E-06 59.3 11.3 36 155-190 99-137 (504)
245 2c9o_A RUVB-like 1; hexameric 96.0 0.0063 2.1E-07 63.6 5.8 84 221-332 296-394 (456)
246 1sq5_A Pantothenate kinase; P- 96.0 0.0065 2.2E-07 60.2 5.6 38 145-182 68-105 (308)
247 3d3q_A TRNA delta(2)-isopenten 96.0 0.0042 1.4E-07 62.9 4.2 33 157-189 7-39 (340)
248 1kgd_A CASK, peripheral plasma 96.0 0.0049 1.7E-07 55.8 4.2 26 157-182 5-30 (180)
249 2bdt_A BH3686; alpha-beta prot 96.0 0.0044 1.5E-07 56.1 3.8 25 158-182 3-27 (189)
250 3tr0_A Guanylate kinase, GMP k 95.9 0.0052 1.8E-07 56.0 4.2 33 156-190 6-38 (205)
251 2gks_A Bifunctional SAT/APS ki 95.9 0.012 4.2E-07 63.1 7.3 64 129-193 345-411 (546)
252 1tf7_A KAIC; homohexamer, hexa 95.8 0.038 1.3E-06 58.7 10.7 24 154-177 36-59 (525)
253 1odf_A YGR205W, hypothetical 3 95.8 0.012 4.2E-07 57.9 6.3 29 154-182 28-56 (290)
254 2xxa_A Signal recognition part 95.7 0.048 1.6E-06 56.8 11.1 37 155-191 98-138 (433)
255 3exa_A TRNA delta(2)-isopenten 95.7 0.0065 2.2E-07 60.9 4.3 34 157-190 3-36 (322)
256 3a00_A Guanylate kinase, GMP k 95.7 0.0053 1.8E-07 55.8 3.4 26 157-182 1-26 (186)
257 1m8p_A Sulfate adenylyltransfe 95.6 0.017 5.9E-07 62.3 7.4 39 155-193 394-436 (573)
258 4eaq_A DTMP kinase, thymidylat 95.6 0.0091 3.1E-07 56.6 4.5 29 155-183 24-52 (229)
259 2pt7_A CAG-ALFA; ATPase, prote 95.6 0.0081 2.8E-07 60.3 4.4 70 158-231 172-251 (330)
260 2jeo_A Uridine-cytidine kinase 95.6 0.0087 3E-07 56.9 4.3 31 154-184 22-52 (245)
261 1xx6_A Thymidine kinase; NESG, 95.6 0.017 5.8E-07 53.5 6.1 32 157-188 8-42 (191)
262 3eph_A TRNA isopentenyltransfe 95.6 0.0091 3.1E-07 61.8 4.7 34 156-189 1-34 (409)
263 1bif_A 6-phosphofructo-2-kinas 95.5 0.017 5.8E-07 60.5 6.9 31 155-185 37-67 (469)
264 2ius_A DNA translocase FTSK; n 95.5 0.059 2E-06 57.4 11.0 72 222-316 299-374 (512)
265 3hdt_A Putative kinase; struct 95.5 0.009 3.1E-07 56.7 4.2 31 157-187 14-44 (223)
266 3ice_A Transcription terminati 95.5 0.028 9.5E-07 58.1 8.0 78 157-234 174-275 (422)
267 3e70_C DPA, signal recognition 95.5 0.075 2.6E-06 53.3 10.9 27 155-181 127-153 (328)
268 1g8f_A Sulfate adenylyltransfe 95.4 0.011 3.8E-07 63.0 4.9 54 129-183 368-421 (511)
269 1gtv_A TMK, thymidylate kinase 95.4 0.0051 1.8E-07 56.4 1.9 24 159-182 2-25 (214)
270 1sky_E F1-ATPase, F1-ATP synth 95.4 0.015 5E-07 61.3 5.5 23 159-181 153-175 (473)
271 1ex7_A Guanylate kinase; subst 95.3 0.016 5.4E-07 53.6 5.1 26 160-185 4-29 (186)
272 1a7j_A Phosphoribulokinase; tr 95.3 0.0062 2.1E-07 60.0 2.4 39 156-194 4-45 (290)
273 1w4r_A Thymidine kinase; type 95.3 0.057 1.9E-06 50.4 8.7 36 155-190 18-56 (195)
274 1lvg_A Guanylate kinase, GMP k 95.2 0.0094 3.2E-07 54.9 3.1 27 156-182 3-29 (198)
275 2ocp_A DGK, deoxyguanosine kin 95.2 0.012 4.2E-07 55.5 4.0 26 157-182 2-27 (241)
276 1j8m_F SRP54, signal recogniti 95.2 0.098 3.4E-06 51.6 10.7 34 157-190 98-134 (297)
277 3aji_B S6C, proteasome (prosom 95.2 0.0051 1.7E-07 48.9 1.1 47 307-356 2-52 (83)
278 1ls1_A Signal recognition part 95.2 0.051 1.8E-06 53.5 8.5 26 156-181 97-122 (295)
279 1zu4_A FTSY; GTPase, signal re 95.1 0.071 2.4E-06 53.2 9.5 36 154-189 102-140 (320)
280 3p32_A Probable GTPase RV1496/ 95.1 0.068 2.3E-06 53.8 9.2 27 155-181 77-103 (355)
281 1znw_A Guanylate kinase, GMP k 95.0 0.015 5.1E-07 53.7 3.9 29 154-182 17-45 (207)
282 1z6g_A Guanylate kinase; struc 95.0 0.013 4.6E-07 54.8 3.5 28 154-181 20-47 (218)
283 3b9q_A Chloroplast SRP recepto 94.9 0.037 1.3E-06 54.8 6.8 28 154-181 97-124 (302)
284 1p5z_B DCK, deoxycytidine kina 94.9 0.0059 2E-07 58.6 0.9 32 154-185 21-53 (263)
285 2qmh_A HPR kinase/phosphorylas 94.9 0.01 3.5E-07 55.7 2.5 32 157-189 34-65 (205)
286 3thx_B DNA mismatch repair pro 94.9 0.1 3.6E-06 59.2 11.1 24 156-179 672-695 (918)
287 3aez_A Pantothenate kinase; tr 94.8 0.02 6.8E-07 57.0 4.3 29 154-182 87-115 (312)
288 3b6e_A Interferon-induced heli 94.7 0.041 1.4E-06 49.9 6.1 24 158-181 49-72 (216)
289 1htw_A HI0065; nucleotide-bind 94.7 0.025 8.6E-07 50.6 4.3 27 155-181 31-57 (158)
290 3lxw_A GTPase IMAP family memb 94.6 0.036 1.2E-06 52.9 5.6 26 155-180 19-44 (247)
291 1c9k_A COBU, adenosylcobinamid 94.6 0.017 6E-07 53.1 3.2 32 160-192 2-33 (180)
292 2og2_A Putative signal recogni 94.6 0.05 1.7E-06 55.3 6.9 28 154-181 154-181 (359)
293 2oap_1 GSPE-2, type II secreti 94.6 0.02 7E-07 60.9 4.1 70 157-230 260-343 (511)
294 3lnc_A Guanylate kinase, GMP k 94.5 0.011 3.9E-07 55.3 1.7 27 155-181 25-52 (231)
295 1p9r_A General secretion pathw 94.5 0.037 1.3E-06 57.4 5.8 25 158-182 168-192 (418)
296 4i1u_A Dephospho-COA kinase; s 94.5 0.023 7.8E-07 53.6 3.7 32 157-189 9-40 (210)
297 3v9p_A DTMP kinase, thymidylat 94.4 0.049 1.7E-06 51.8 6.0 26 156-181 24-49 (227)
298 1vt4_I APAF-1 related killer D 94.4 0.094 3.2E-06 60.5 9.1 25 156-180 149-173 (1221)
299 1tf7_A KAIC; homohexamer, hexa 94.4 0.062 2.1E-06 57.0 7.3 29 153-181 277-305 (525)
300 4b3f_X DNA-binding protein smu 94.4 0.021 7E-07 62.3 3.5 33 159-191 207-242 (646)
301 1wb9_A DNA mismatch repair pro 94.3 0.21 7.3E-06 55.9 11.8 24 157-180 607-630 (800)
302 2v9p_A Replication protein E1; 94.3 0.029 1E-06 55.8 4.2 28 154-181 123-150 (305)
303 2j9r_A Thymidine kinase; TK1, 94.3 0.048 1.6E-06 51.6 5.4 33 157-189 28-63 (214)
304 3thx_A DNA mismatch repair pro 94.2 0.22 7.7E-06 56.7 11.8 22 158-179 663-684 (934)
305 1rj9_A FTSY, signal recognitio 94.2 0.035 1.2E-06 55.1 4.6 26 156-181 101-126 (304)
306 2px0_A Flagellar biosynthesis 94.2 0.095 3.2E-06 51.6 7.7 36 155-190 103-142 (296)
307 2i3b_A HCR-ntpase, human cance 94.2 0.028 9.5E-07 51.8 3.5 23 159-181 3-25 (189)
308 1xjc_A MOBB protein homolog; s 94.2 0.033 1.1E-06 50.7 4.0 33 157-189 4-39 (169)
309 3upu_A ATP-dependent DNA helic 94.1 0.027 9.3E-07 58.7 3.8 23 159-181 47-69 (459)
310 1s96_A Guanylate kinase, GMP k 94.1 0.035 1.2E-06 52.4 4.1 28 155-182 14-41 (219)
311 1np6_A Molybdopterin-guanine d 94.0 0.038 1.3E-06 50.3 4.1 26 156-181 5-30 (174)
312 4edh_A DTMP kinase, thymidylat 94.0 0.037 1.3E-06 51.9 4.1 27 156-182 5-31 (213)
313 3tmk_A Thymidylate kinase; pho 94.0 0.052 1.8E-06 51.2 5.1 29 156-184 4-32 (216)
314 2yhs_A FTSY, cell division pro 93.8 0.085 2.9E-06 56.0 6.8 28 154-181 290-317 (503)
315 3e1s_A Exodeoxyribonuclease V, 93.7 0.037 1.3E-06 59.7 3.9 33 157-189 204-239 (574)
316 3kta_A Chromosome segregation 93.7 0.045 1.6E-06 48.8 3.9 26 158-183 27-52 (182)
317 3lv8_A DTMP kinase, thymidylat 93.7 0.044 1.5E-06 52.4 4.0 27 156-182 26-52 (236)
318 2gza_A Type IV secretion syste 93.6 0.084 2.9E-06 53.4 6.2 25 158-182 176-200 (361)
319 2ffh_A Protein (FFH); SRP54, s 93.6 0.19 6.4E-06 52.3 8.9 26 156-181 97-122 (425)
320 3ch4_B Pmkase, phosphomevalona 93.5 0.073 2.5E-06 49.9 5.1 30 154-183 8-37 (202)
321 2dzn_B 26S protease regulatory 93.4 0.01 3.6E-07 47.2 -0.7 47 309-358 1-51 (82)
322 3vkw_A Replicase large subunit 93.4 0.14 4.9E-06 53.5 7.5 25 155-179 159-183 (446)
323 3ld9_A DTMP kinase, thymidylat 93.3 0.06 2.1E-06 51.1 4.3 29 155-183 19-47 (223)
324 1nrj_B SR-beta, signal recogni 93.3 0.06 2E-06 49.2 4.1 27 155-181 10-36 (218)
325 3l0o_A Transcription terminati 93.3 0.18 6.3E-06 52.0 8.0 75 159-233 177-275 (427)
326 2onk_A Molybdate/tungstate ABC 93.2 0.047 1.6E-06 52.2 3.3 27 154-181 22-48 (240)
327 2p67_A LAO/AO transport system 93.2 0.23 8E-06 49.6 8.6 27 155-181 54-80 (341)
328 3cr8_A Sulfate adenylyltranfer 93.1 0.096 3.3E-06 56.3 6.0 28 155-182 367-394 (552)
329 1ewq_A DNA mismatch repair pro 93.1 0.2 6.8E-06 55.9 8.6 23 158-180 577-599 (765)
330 2v3c_C SRP54, signal recogniti 93.0 0.083 2.8E-06 55.0 5.0 37 155-191 97-136 (432)
331 2f9l_A RAB11B, member RAS onco 92.9 0.056 1.9E-06 48.9 3.3 23 158-180 6-28 (199)
332 2gk6_A Regulator of nonsense t 92.9 0.055 1.9E-06 58.8 3.8 23 159-181 197-219 (624)
333 1z2a_A RAS-related protein RAB 92.9 0.061 2.1E-06 46.3 3.4 24 157-180 5-28 (168)
334 1oix_A RAS-related protein RAB 92.9 0.057 2E-06 48.7 3.2 25 157-181 29-53 (191)
335 2ged_A SR-beta, signal recogni 92.8 0.078 2.7E-06 47.2 4.0 26 155-180 46-71 (193)
336 2pcj_A ABC transporter, lipopr 92.8 0.049 1.7E-06 51.4 2.8 26 156-181 29-54 (224)
337 4tmk_A Protein (thymidylate ki 92.8 0.074 2.5E-06 49.9 4.0 25 157-181 3-27 (213)
338 3tqf_A HPR(Ser) kinase; transf 92.8 0.064 2.2E-06 49.3 3.4 27 158-185 17-43 (181)
339 2cbz_A Multidrug resistance-as 92.7 0.053 1.8E-06 51.6 2.9 27 155-181 29-55 (237)
340 3b85_A Phosphate starvation-in 92.7 0.047 1.6E-06 51.0 2.5 23 158-180 23-45 (208)
341 3bc1_A RAS-related protein RAB 92.7 0.068 2.3E-06 47.1 3.4 26 155-180 9-34 (195)
342 2dyk_A GTP-binding protein; GT 92.7 0.068 2.3E-06 45.8 3.3 22 159-180 3-24 (161)
343 1kao_A RAP2A; GTP-binding prot 92.6 0.071 2.4E-06 45.6 3.3 23 158-180 4-26 (167)
344 3tif_A Uncharacterized ABC tra 92.6 0.057 2E-06 51.3 2.9 27 155-181 29-55 (235)
345 1u8z_A RAS-related protein RAL 92.6 0.072 2.5E-06 45.6 3.4 24 157-180 4-27 (168)
346 1upt_A ARL1, ADP-ribosylation 92.5 0.096 3.3E-06 45.3 4.1 26 155-180 5-30 (171)
347 2f1r_A Molybdopterin-guanine d 92.5 0.05 1.7E-06 49.3 2.2 25 158-182 3-27 (171)
348 1ky3_A GTP-binding protein YPT 92.4 0.076 2.6E-06 46.3 3.3 26 155-180 6-31 (182)
349 2ce2_X GTPase HRAS; signaling 92.4 0.078 2.7E-06 45.2 3.3 23 158-180 4-26 (166)
350 1b0u_A Histidine permease; ABC 92.3 0.064 2.2E-06 51.9 2.9 28 155-182 30-57 (262)
351 2wsm_A Hydrogenase expression/ 92.3 0.099 3.4E-06 47.9 4.1 28 156-183 29-56 (221)
352 2d2e_A SUFC protein; ABC-ATPas 92.3 0.076 2.6E-06 50.9 3.4 25 156-180 28-52 (250)
353 2o8b_B DNA mismatch repair pro 92.2 0.46 1.6E-05 54.7 10.3 23 157-179 789-811 (1022)
354 2nzj_A GTP-binding protein REM 92.2 0.082 2.8E-06 45.9 3.3 24 157-180 4-27 (175)
355 1lw7_A Transcriptional regulat 92.2 0.075 2.6E-06 53.5 3.5 27 157-183 170-196 (365)
356 2lkc_A Translation initiation 92.2 0.088 3E-06 45.9 3.5 26 155-180 6-31 (178)
357 1g6h_A High-affinity branched- 92.2 0.066 2.3E-06 51.5 2.9 26 156-181 32-57 (257)
358 1ek0_A Protein (GTP-binding pr 92.2 0.071 2.4E-06 45.9 2.8 23 158-180 4-26 (170)
359 2zu0_C Probable ATP-dependent 92.2 0.079 2.7E-06 51.4 3.4 26 155-180 44-69 (267)
360 1mv5_A LMRA, multidrug resista 92.2 0.068 2.3E-06 50.9 2.9 27 155-181 26-52 (243)
361 3sop_A Neuronal-specific septi 92.2 0.08 2.7E-06 51.5 3.4 23 159-181 4-26 (270)
362 4dcu_A GTP-binding protein ENG 92.1 0.2 6.9E-06 52.0 6.7 23 158-180 24-46 (456)
363 4f4c_A Multidrug resistance pr 92.1 0.56 1.9E-05 55.4 11.1 27 155-181 442-468 (1321)
364 3fvq_A Fe(3+) IONS import ATP- 92.1 0.077 2.6E-06 54.0 3.3 25 157-181 30-54 (359)
365 3clv_A RAB5 protein, putative; 92.1 0.11 3.6E-06 46.1 3.9 25 156-180 6-30 (208)
366 1ji0_A ABC transporter; ATP bi 92.1 0.071 2.4E-06 50.8 2.9 26 156-181 31-56 (240)
367 1w36_D RECD, exodeoxyribonucle 92.0 0.085 2.9E-06 57.2 3.8 24 158-181 165-188 (608)
368 2olj_A Amino acid ABC transpor 92.0 0.073 2.5E-06 51.6 2.9 27 155-181 48-74 (263)
369 1yrb_A ATP(GTP)binding protein 92.0 0.17 5.7E-06 47.7 5.4 35 155-189 12-48 (262)
370 2vp4_A Deoxynucleoside kinase; 92.0 0.064 2.2E-06 50.3 2.4 26 155-180 18-43 (230)
371 2ghi_A Transport protein; mult 92.0 0.075 2.6E-06 51.3 2.9 27 155-181 44-70 (260)
372 1g16_A RAS-related protein SEC 91.9 0.092 3.1E-06 45.2 3.3 23 158-180 4-26 (170)
373 2wji_A Ferrous iron transport 91.9 0.089 3E-06 46.0 3.2 23 158-180 4-26 (165)
374 1sgw_A Putative ABC transporte 91.9 0.069 2.4E-06 50.2 2.6 25 157-181 35-59 (214)
375 1z0j_A RAB-22, RAS-related pro 91.9 0.094 3.2E-06 45.2 3.3 25 157-181 6-30 (170)
376 2ixe_A Antigen peptide transpo 91.9 0.076 2.6E-06 51.6 2.9 27 155-181 43-69 (271)
377 3gfo_A Cobalt import ATP-bindi 91.9 0.074 2.5E-06 52.0 2.8 26 156-181 33-58 (275)
378 1wms_A RAB-9, RAB9, RAS-relate 91.9 0.095 3.2E-06 45.7 3.3 24 157-180 7-30 (177)
379 2ff7_A Alpha-hemolysin translo 91.9 0.076 2.6E-06 50.9 2.9 27 155-181 33-59 (247)
380 1dek_A Deoxynucleoside monopho 91.9 0.071 2.4E-06 51.2 2.6 28 158-185 2-29 (241)
381 2pze_A Cystic fibrosis transme 91.8 0.078 2.7E-06 50.1 2.8 26 156-181 33-58 (229)
382 2zej_A Dardarin, leucine-rich 91.8 0.075 2.6E-06 47.4 2.6 21 159-179 4-24 (184)
383 1z08_A RAS-related protein RAB 91.8 0.098 3.4E-06 45.2 3.3 25 156-180 5-29 (170)
384 1f2t_A RAD50 ABC-ATPase; DNA d 91.8 0.1 3.6E-06 45.8 3.5 25 157-181 23-47 (149)
385 2hf9_A Probable hydrogenase ni 91.8 0.12 4.1E-06 47.5 4.1 27 156-182 37-63 (226)
386 2wjg_A FEOB, ferrous iron tran 91.8 0.093 3.2E-06 46.4 3.2 24 157-180 7-30 (188)
387 1c1y_A RAS-related protein RAP 91.8 0.1 3.5E-06 44.8 3.4 23 158-180 4-26 (167)
388 4g1u_C Hemin import ATP-bindin 91.8 0.079 2.7E-06 51.4 2.8 26 156-181 36-61 (266)
389 1r2q_A RAS-related protein RAB 91.7 0.1 3.5E-06 44.8 3.3 24 157-180 6-29 (170)
390 2qm8_A GTPase/ATPase; G protei 91.7 0.12 4.2E-06 51.7 4.3 28 154-181 52-79 (337)
391 1z47_A CYSA, putative ABC-tran 91.7 0.092 3.1E-06 53.3 3.4 25 157-181 41-65 (355)
392 2qi9_C Vitamin B12 import ATP- 91.6 0.083 2.8E-06 50.8 2.8 26 156-181 25-50 (249)
393 1r8s_A ADP-ribosylation factor 91.6 0.11 3.9E-06 44.5 3.5 22 159-180 2-23 (164)
394 3rlf_A Maltose/maltodextrin im 91.6 0.094 3.2E-06 53.8 3.4 26 156-181 28-53 (381)
395 1vpl_A ABC transporter, ATP-bi 91.6 0.087 3E-06 50.9 2.9 27 155-181 39-65 (256)
396 2yyz_A Sugar ABC transporter, 91.6 0.099 3.4E-06 53.1 3.5 26 156-181 28-53 (359)
397 2yz2_A Putative ABC transporte 91.6 0.088 3E-06 51.0 2.9 27 155-181 31-57 (266)
398 4hlc_A DTMP kinase, thymidylat 91.5 0.15 5.2E-06 47.4 4.5 31 158-188 3-35 (205)
399 2ihy_A ABC transporter, ATP-bi 91.5 0.085 2.9E-06 51.6 2.8 26 156-181 46-71 (279)
400 2it1_A 362AA long hypothetical 91.5 0.1 3.4E-06 53.2 3.4 26 156-181 28-53 (362)
401 2hxs_A RAB-26, RAS-related pro 91.5 0.1 3.4E-06 45.6 3.1 25 156-180 5-29 (178)
402 2atv_A RERG, RAS-like estrogen 91.5 0.13 4.4E-06 46.1 3.9 26 155-180 26-51 (196)
403 2erx_A GTP-binding protein DI- 91.5 0.093 3.2E-06 45.2 2.8 23 158-180 4-26 (172)
404 1g29_1 MALK, maltose transport 91.5 0.099 3.4E-06 53.4 3.4 26 156-181 28-53 (372)
405 2wjy_A Regulator of nonsense t 91.5 0.1 3.5E-06 58.5 3.8 23 159-181 373-395 (800)
406 3q85_A GTP-binding protein REM 91.4 0.11 3.7E-06 44.9 3.2 21 159-179 4-24 (169)
407 2y8e_A RAB-protein 6, GH09086P 91.4 0.11 3.8E-06 45.1 3.2 23 158-180 15-37 (179)
408 2a9k_A RAS-related protein RAL 91.4 0.12 4E-06 45.3 3.4 25 156-180 17-41 (187)
409 3q72_A GTP-binding protein RAD 91.3 0.1 3.5E-06 45.0 2.9 21 159-179 4-24 (166)
410 1v43_A Sugar-binding transport 91.3 0.11 3.7E-06 53.1 3.4 27 155-181 35-61 (372)
411 1svi_A GTP-binding protein YSX 91.3 0.11 3.9E-06 46.1 3.3 25 156-180 22-46 (195)
412 1moz_A ARL1, ADP-ribosylation 91.3 0.12 4.1E-06 45.4 3.4 25 155-179 16-40 (183)
413 1m7b_A RND3/RHOE small GTP-bin 91.3 0.11 3.9E-06 46.0 3.3 25 156-180 6-30 (184)
414 1z0f_A RAB14, member RAS oncog 91.3 0.12 4.1E-06 44.9 3.3 25 156-180 14-38 (179)
415 2fwr_A DNA repair protein RAD2 91.2 0.27 9.3E-06 50.6 6.4 33 159-191 110-142 (472)
416 3d31_A Sulfate/molybdate ABC t 91.2 0.089 3E-06 53.2 2.7 26 156-181 25-50 (348)
417 2nq2_C Hypothetical ABC transp 91.2 0.084 2.9E-06 50.8 2.4 27 155-181 29-55 (253)
418 2fn4_A P23, RAS-related protei 91.2 0.13 4.3E-06 44.9 3.3 24 157-180 9-32 (181)
419 4dsu_A GTPase KRAS, isoform 2B 91.2 0.11 3.8E-06 45.7 3.0 24 157-180 4-27 (189)
420 1pui_A ENGB, probable GTP-bind 91.1 0.066 2.3E-06 48.5 1.5 26 155-180 24-49 (210)
421 2gj8_A MNME, tRNA modification 91.1 0.13 4.6E-06 45.4 3.5 24 157-180 4-27 (172)
422 3bwd_D RAC-like GTP-binding pr 91.1 0.16 5.4E-06 44.4 3.9 25 156-180 7-31 (182)
423 2bme_A RAB4A, RAS-related prot 91.0 0.13 4.3E-06 45.3 3.2 25 156-180 9-33 (186)
424 2efe_B Small GTP-binding prote 91.0 0.13 4.5E-06 44.9 3.3 25 156-180 11-35 (181)
425 3con_A GTPase NRAS; structural 91.0 0.13 4.5E-06 45.6 3.3 24 157-180 21-44 (190)
426 2oil_A CATX-8, RAS-related pro 91.0 0.13 4.5E-06 45.8 3.3 26 155-180 23-48 (193)
427 2pjz_A Hypothetical protein ST 91.0 0.11 3.6E-06 50.5 2.8 25 157-181 30-54 (263)
428 1m2o_B GTP-binding protein SAR 91.0 0.14 4.8E-06 46.0 3.5 25 156-180 22-46 (190)
429 2g6b_A RAS-related protein RAB 90.9 0.12 4.1E-06 45.1 2.9 26 155-180 8-33 (180)
430 2p5s_A RAS and EF-hand domain 90.8 0.16 5.4E-06 45.8 3.7 26 155-180 26-51 (199)
431 3tw8_B RAS-related protein RAB 90.8 0.13 4.3E-06 44.9 3.0 25 156-180 8-32 (181)
432 3kkq_A RAS-related protein M-R 90.8 0.15 5.2E-06 44.8 3.5 25 156-180 17-41 (183)
433 3tkl_A RAS-related protein RAB 90.7 0.15 5E-06 45.3 3.4 26 155-180 14-39 (196)
434 3hjn_A DTMP kinase, thymidylat 90.7 0.23 7.8E-06 45.8 4.7 30 160-189 3-35 (197)
435 1ksh_A ARF-like protein 2; sma 90.6 0.16 5.5E-06 44.8 3.5 26 155-180 16-41 (186)
436 1mh1_A RAC1; GTP-binding, GTPa 90.6 0.15 5.2E-06 44.6 3.3 23 158-180 6-28 (186)
437 3b1v_A Ferrous iron uptake tra 90.6 0.39 1.3E-05 46.5 6.6 23 158-180 4-26 (272)
438 1oxx_K GLCV, glucose, ABC tran 90.6 0.089 3E-06 53.3 2.0 26 156-181 30-55 (353)
439 3k53_A Ferrous iron transport 90.5 0.15 5.2E-06 48.9 3.5 23 158-180 4-26 (271)
440 2www_A Methylmalonic aciduria 90.5 0.42 1.4E-05 48.0 6.9 26 156-181 73-98 (349)
441 1vg8_A RAS-related protein RAB 90.5 0.15 5.3E-06 45.7 3.3 26 155-180 6-31 (207)
442 2xzl_A ATP-dependent helicase 90.5 0.14 4.7E-06 57.5 3.6 33 159-191 377-413 (802)
443 3t1o_A Gliding protein MGLA; G 90.5 0.16 5.4E-06 44.9 3.3 26 156-181 13-38 (198)
444 1z06_A RAS-related protein RAB 90.5 0.16 5.4E-06 45.2 3.3 25 156-180 19-43 (189)
445 2gf9_A RAS-related protein RAB 90.5 0.16 5.4E-06 45.2 3.3 24 157-180 22-45 (189)
446 3gd7_A Fusion complex of cysti 90.4 0.14 4.9E-06 52.6 3.4 26 155-180 45-70 (390)
447 3dz8_A RAS-related protein RAB 90.4 0.16 5.5E-06 45.3 3.4 26 156-181 22-47 (191)
448 2cxx_A Probable GTP-binding pr 90.4 0.14 4.9E-06 45.1 3.0 22 159-180 3-24 (190)
449 2gf0_A GTP-binding protein DI- 90.4 0.21 7E-06 44.5 4.1 26 155-180 6-31 (199)
450 2hjg_A GTP-binding protein ENG 90.4 0.37 1.3E-05 49.7 6.5 22 159-180 5-26 (436)
451 2x77_A ADP-ribosylation factor 90.4 0.14 4.9E-06 45.4 3.0 25 155-179 20-44 (189)
452 1zd9_A ADP-ribosylation factor 90.4 0.14 4.9E-06 45.6 3.0 26 155-180 20-45 (188)
453 3i8s_A Ferrous iron transport 90.3 0.55 1.9E-05 45.2 7.3 24 157-180 3-26 (274)
454 1x3s_A RAS-related protein RAB 90.3 0.17 5.7E-06 44.8 3.3 24 157-180 15-38 (195)
455 3t34_A Dynamin-related protein 90.3 1.5 5E-05 43.8 10.7 25 155-180 33-57 (360)
456 2bbs_A Cystic fibrosis transme 90.3 0.13 4.5E-06 50.5 2.9 27 155-181 62-88 (290)
457 1zj6_A ADP-ribosylation factor 90.2 0.19 6.6E-06 44.5 3.7 26 155-180 14-39 (187)
458 3c5c_A RAS-like protein 12; GD 90.2 0.17 5.8E-06 45.2 3.3 24 157-180 21-44 (187)
459 2obl_A ESCN; ATPase, hydrolase 90.1 0.22 7.4E-06 50.3 4.4 28 157-184 71-98 (347)
460 3cph_A RAS-related protein SEC 90.1 0.2 6.7E-06 45.2 3.7 26 155-180 18-43 (213)
461 2bov_A RAla, RAS-related prote 90.1 0.18 6.3E-06 45.0 3.5 24 157-180 14-37 (206)
462 2fg5_A RAB-22B, RAS-related pr 90.1 0.15 5.1E-06 45.6 2.9 26 155-180 21-46 (192)
463 3t5g_A GTP-binding protein RHE 90.1 0.17 5.9E-06 44.3 3.2 24 157-180 6-29 (181)
464 2npi_A Protein CLP1; CLP1-PCF1 90.1 0.15 5.1E-06 53.5 3.2 24 157-180 138-161 (460)
465 3iby_A Ferrous iron transport 90.1 0.42 1.4E-05 45.7 6.2 22 159-180 3-24 (256)
466 3pqc_A Probable GTP-binding pr 90.0 0.18 6.1E-06 44.5 3.3 23 158-180 24-46 (195)
467 3qks_A DNA double-strand break 90.0 0.19 6.3E-06 46.5 3.5 27 157-183 23-49 (203)
468 2iwr_A Centaurin gamma 1; ANK 90.0 0.14 4.7E-06 44.8 2.5 24 157-180 7-30 (178)
469 2fh5_B SR-beta, signal recogni 89.9 0.2 6.8E-06 45.5 3.6 25 156-180 6-30 (214)
470 2qe7_A ATP synthase subunit al 89.9 0.47 1.6E-05 50.2 6.9 65 159-230 164-229 (502)
471 2a5j_A RAS-related protein RAB 89.9 0.19 6.3E-06 44.9 3.3 25 156-180 20-44 (191)
472 3ihw_A Centg3; RAS, centaurin, 89.9 0.18 6.3E-06 45.0 3.3 24 157-180 20-43 (184)
473 4gzl_A RAS-related C3 botulinu 89.9 0.2 6.9E-06 45.4 3.6 26 155-180 28-53 (204)
474 1fzq_A ADP-ribosylation factor 89.9 0.2 6.8E-06 44.5 3.5 26 155-180 14-39 (181)
475 3oes_A GTPase rhebl1; small GT 89.8 0.18 6.3E-06 45.4 3.3 25 156-180 23-47 (201)
476 3reg_A RHO-like small GTPase; 89.8 0.19 6.5E-06 44.8 3.3 26 155-180 21-46 (194)
477 2dpy_A FLII, flagellum-specifi 89.8 0.23 7.9E-06 51.7 4.4 30 155-184 155-184 (438)
478 2r9v_A ATP synthase subunit al 89.7 0.43 1.5E-05 50.7 6.4 65 159-230 177-242 (515)
479 3e2i_A Thymidine kinase; Zn-bi 89.6 0.24 8.1E-06 46.9 3.9 34 156-189 27-63 (219)
480 1zbd_A Rabphilin-3A; G protein 89.6 0.19 6.4E-06 45.1 3.2 24 157-180 8-31 (203)
481 2xau_A PRE-mRNA-splicing facto 89.6 0.33 1.1E-05 54.1 5.8 23 158-180 110-132 (773)
482 1f6b_A SAR1; gtpases, N-termin 89.6 0.19 6.5E-06 45.5 3.2 23 157-179 25-47 (198)
483 2bcg_Y Protein YP2, GTP-bindin 89.5 0.2 6.7E-06 45.2 3.2 24 157-180 8-31 (206)
484 2b6h_A ADP-ribosylation factor 89.5 0.18 6.3E-06 45.2 3.0 26 155-180 27-52 (192)
485 1gwn_A RHO-related GTP-binding 89.5 0.2 6.8E-06 45.8 3.2 25 156-180 27-51 (205)
486 3nh6_A ATP-binding cassette SU 89.4 0.14 4.6E-06 50.9 2.1 27 155-181 78-104 (306)
487 3lxx_A GTPase IMAP family memb 89.3 0.2 6.7E-06 46.9 3.2 25 156-180 28-52 (239)
488 2orv_A Thymidine kinase; TP4A 89.3 2 6.8E-05 41.0 10.1 34 156-189 18-54 (234)
489 3tui_C Methionine import ATP-b 89.3 0.21 7.1E-06 50.9 3.4 27 155-181 52-78 (366)
490 2ew1_A RAS-related protein RAB 89.1 0.22 7.4E-06 45.5 3.2 25 156-180 25-49 (201)
491 1fx0_A ATP synthase alpha chai 89.1 0.44 1.5E-05 50.5 5.9 65 159-230 165-230 (507)
492 2q3h_A RAS homolog gene family 89.0 0.25 8.6E-06 44.2 3.6 26 155-180 18-43 (201)
493 2h17_A ADP-ribosylation factor 89.0 0.2 6.7E-06 44.3 2.7 25 156-180 20-44 (181)
494 4bas_A ADP-ribosylation factor 89.0 0.21 7.3E-06 44.3 3.0 26 155-180 15-40 (199)
495 2atx_A Small GTP binding prote 89.0 0.23 7.9E-06 44.2 3.2 24 157-180 18-41 (194)
496 2fu5_C RAS-related protein RAB 88.9 0.13 4.6E-06 45.1 1.6 25 156-180 7-31 (183)
497 3mfy_A V-type ATP synthase alp 88.8 0.29 9.8E-06 52.6 4.2 46 159-211 229-274 (588)
498 2rcn_A Probable GTPase ENGC; Y 88.7 0.23 7.9E-06 50.4 3.4 24 158-181 216-239 (358)
499 2fv8_A H6, RHO-related GTP-bin 88.6 0.25 8.4E-06 44.8 3.2 24 157-180 25-48 (207)
500 4ag6_A VIRB4 ATPase, type IV s 88.6 0.39 1.3E-05 48.6 5.0 33 157-189 35-70 (392)
No 1
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=100.00 E-value=3.2e-50 Score=402.11 Aligned_cols=293 Identities=90% Similarity=1.437 Sum_probs=253.7
Q ss_pred hhhccccCCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCCh
Q 011983 122 HLDNTLDGLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201 (473)
Q Consensus 122 ~f~~~~~~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~ 201 (473)
+|+++.+++|++++|++++..+++++++..++.++|+++|||||||||||++|++||++++.+|+.++++++.++|+|++
T Consensus 1 ~~~~~~~~~y~~~~~~~~~~~~~~k~~l~~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~ 80 (293)
T 3t15_A 1 NLDNKLDGFYIAPAFMDKLVVHITKNFLKLPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEP 80 (293)
T ss_dssp CCCCEETTEECCHHHHHHHHHHHHHTTSCCTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HH
T ss_pred CcccccCcccCCHHHHHHHHHHHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchh
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEE
Q 011983 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281 (473)
Q Consensus 202 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIa 281 (473)
+..++++|+.|.++++..+|+||||||||++++++++..+.+...+.+...|++++|+.+.+++++.+......+++||+
T Consensus 81 ~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ 160 (293)
T 3t15_A 81 AKLIRQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIV 160 (293)
T ss_dssp HHHHHHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEE
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEE
Confidence 99999999999878888999999999999999876655566667889999999999999999999887667788999999
Q ss_pred ecCCCCCCccccccCCCceEEEecCCHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011983 282 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWIS 361 (473)
Q Consensus 282 TTN~~~~Ld~aLlR~GRfd~~i~~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~ 361 (473)
|||+++.||++|+|+||||..+++|+.++|.+|++.++...+++.+.++.++++|++++++|+++++++.+++.+++|+.
T Consensus 161 ttN~~~~ld~al~R~~R~d~~i~~P~~~~r~~Il~~~~~~~~~~~~~l~~~~~~~~~~~l~~~~~l~~~~~~~~i~~~~~ 240 (293)
T 3t15_A 161 TGNDFSTLYAPLIRDGRMEKFYWAPTREDRIGVCTGIFRTDNVPAEDVVKIVDNFPGQSIDFFGALRARVYDDEVRKWVS 240 (293)
T ss_dssp ECSSCCC--CHHHHHHHEEEEEECCCHHHHHHHHHHHHGGGCCCHHHHHHHHHHSCSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCcccCCHHHhCCCCCceeEeCcCHHHHHHHHHHhccCCCCCHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999988999999999999999999999999999999999999999
Q ss_pred HhcchhhhhhhccCCCCCCCcCCCcccHHHHHHHHhhhhhhHHHHHHHHHHHH
Q 011983 362 EVGIERIGKRLVNSKEGPPTFEQPKMTLDKLLEYGRMLVQEQENVKRVQLADK 414 (473)
Q Consensus 362 ~~g~~~i~~~lv~~~~~~p~f~~~~~t~e~ll~~~~~~v~eqe~v~~~~l~~~ 414 (473)
+.|.+++.+.+++++...|.|.++.+++++++++++.++.||++++.++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~eq~~~~~~~l~~~ 293 (293)
T 3t15_A 241 GTGIEKIGDKLLNSFDGPPTFEQPKMTIEKLLEYGNMLVQEQENVKRVQLADK 293 (293)
T ss_dssp HTCSTTCHHHHTSCSSCSCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HhCHHHHHHHHHcCCCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccC
Confidence 99999999999999999999999999999999999999999999999999863
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.4e-39 Score=334.69 Aligned_cols=189 Identities=19% Similarity=0.289 Sum_probs=160.0
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.++++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+ ..+||||||||+|+
T Consensus 177 ~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~sk~vGese~~vr~lF~~Ar----~~aP~IIFiDEiDa 252 (405)
T 4b4t_J 177 LGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAR----EHAPSIIFMDEIDS 252 (405)
T ss_dssp HTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSCSSTTHHHHHHHHHHHHHH----HTCSEEEEEESSSC
T ss_pred CCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhccccchHHHHHHHHHHHHH----HhCCceEeeecchh
Confidence 37899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++++|...... .+..+..++.+++. +|||+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.+
T Consensus 253 i~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~V~vIaATNrpd~LDpAllRpGRfD~~I~i~lPd~~ 322 (405)
T 4b4t_J 253 IGSTRVEGSGG--GDSEVQRTMLELLN-----QLDGF---ETSKNIKIIMATNRLDILDPALLRPGRIDRKIEFPPPSVA 322 (405)
T ss_dssp CTTSCSCSSSG--GGGHHHHHHHHHHH-----HHHTT---TCCCCEEEEEEESCSSSSCHHHHSTTSSCCEEECCCCCHH
T ss_pred hccCCCCCCCC--CcHHHHHHHHHHHH-----hhhcc---CCCCCeEEEeccCChhhCCHhHcCCCcCceEEEcCCcCHH
Confidence 99876532221 11222222333333 45666 567889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
+|.+||+.++++ .+++.+.+++.+++|+|+++. ++|..+...+++
T Consensus 323 ~R~~Il~~~~~~~~l~~dvdl~~lA~~t~G~SGADi~---~l~~eA~~~Air 371 (405)
T 4b4t_J 323 ARAEILRIHSRKMNLTRGINLRKVAEKMNGCSGADVK---GVCTEAGMYALR 371 (405)
T ss_dssp HHHHHHHHHHTTSBCCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCccCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHH
Confidence 999999988876 457788999999999999988 777777666554
No 3
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.3e-38 Score=331.26 Aligned_cols=189 Identities=25% Similarity=0.366 Sum_probs=158.8
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.++++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.++.+|..|. ..+||||||||+|+
T Consensus 210 ~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~sk~~Gese~~ir~~F~~A~----~~~P~IifiDEiDa 285 (437)
T 4b4t_L 210 VGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVDKYIGESARIIREMFAYAK----EHEPCIIFMDEVDA 285 (437)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCCSSSSHHHHHHHHHHHHHH----HSCSEEEEEECCCS
T ss_pred CCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhccccchHHHHHHHHHHHHHH----hcCCceeeeecccc
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++++|...... .+..+..++..++. +|||+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.+
T Consensus 286 i~~~R~~~~~~--~~~~~~~~l~~lL~-----~lDg~---~~~~~vivI~ATNrp~~LDpAllRpGRfD~~I~i~lPd~~ 355 (437)
T 4b4t_L 286 IGGRRFSEGTS--ADREIQRTLMELLT-----QMDGF---DNLGQTKIIMATNRPDTLDPALLRPGRLDRKVEIPLPNEA 355 (437)
T ss_dssp SSCCCSSSCCS--STTHHHHHHHHHHH-----HHHSS---SCTTSSEEEEEESSTTSSCTTTTSTTSEEEEECCCCCCHH
T ss_pred cccccccCCCC--cchHHHHHHHHHHH-----Hhhcc---cCCCCeEEEEecCCchhhCHHHhCCCccceeeecCCcCHH
Confidence 99887532221 11222223333333 45566 556889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
+|.+||+.++.+ .+++.+.+++.+++|+|++|. ++|..+...+++
T Consensus 356 ~R~~Il~~~~~~~~~~~d~dl~~lA~~t~G~sGADi~---~l~~eA~~~air 404 (437)
T 4b4t_L 356 GRLEIFKIHTAKVKKTGEFDFEAAVKMSDGFNGADIR---NCATEAGFFAIR 404 (437)
T ss_dssp HHHHHHHHHHHTSCBCSCCCHHHHHHTCCSCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcccCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHH
Confidence 999999988865 467888999999999999887 777666555554
No 4
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-38 Score=330.18 Aligned_cols=188 Identities=23% Similarity=0.313 Sum_probs=159.2
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.++++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.++.+|..|. ..+||||||||+|+
T Consensus 211 ~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 286 (437)
T 4b4t_I 211 MGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAG----ENAPSIVFIDEIDA 286 (437)
T ss_dssp HTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCCSSSSHHHHHHHHHHHHHH----HTCSEEEEEEEESS
T ss_pred CCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhhccCchHHHHHHHHHHHHH----hcCCcEEEEehhhh
Confidence 47899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccccCCCCCcc-chhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 232 GAGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 232 l~~~r~~~~~~-~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
+++.|...... +...+.+...|++ ++||+ ....+|+||+|||+++.|||||+||||||+.|+ +|+.
T Consensus 287 i~~~R~~~~~~~~~~~~~~l~~LL~--------~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRfD~~I~v~lPd~ 355 (437)
T 4b4t_I 287 IGTKRYDSNSGGEREIQRTMLELLN--------QLDGF---DDRGDVKVIMATNKIETLDPALIRPGRIDRKILFENPDL 355 (437)
T ss_dssp SSCCCSCSSCSSCCHHHHHHHHHHH--------HHHHC---CCSSSEEEEEEESCSTTCCTTSSCTTTEEEEECCCCCCH
T ss_pred hcccCCCCCCCccHHHHHHHHHHHH--------HhhCc---CCCCCEEEEEeCCChhhcCHHHhcCCceeEEEEcCCcCH
Confidence 99887543221 1122222233333 44555 567889999999999999999999999999999 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
++|.+||+.++.+ .+++.+.++..+++|+|++|. ++|..+...+++
T Consensus 356 ~~R~~Il~~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eA~~~Air 405 (437)
T 4b4t_I 356 STKKKILGIHTSKMNLSEDVNLETLVTTKDDLSGADIQ---AMCTEAGLLALR 405 (437)
T ss_dssp HHHHHHHHHHHTTSCBCSCCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHH
Confidence 9999999988876 457788999999999999988 777766666554
No 5
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=7.8e-38 Score=328.59 Aligned_cols=190 Identities=21% Similarity=0.313 Sum_probs=160.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.++++|+|+|||||||||||++|++||++++.+|+.++++++.++|+|++++.++.+|..|+ ..+||||||||+|+
T Consensus 238 ~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~sk~vGesek~ir~lF~~Ar----~~aP~IIfiDEiDa 313 (467)
T 4b4t_H 238 LGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMAR----TKKACIIFFDEIDA 313 (467)
T ss_dssp HTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCCCSSSHHHHHHHHHHHHHH----HTCSEEEEEECCTT
T ss_pred CCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhcccCCHHHHHHHHHHHHHH----hcCCceEeeccccc
Confidence 47899999999999999999999999999999999999999999999999999999999998 99999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++.+|..... .....+..++..++. +|+|+ ....+|+||+|||+++.||+||+||||||+.|+ +|+.+
T Consensus 314 i~~~R~~~~~--~~~~~~~~~l~~lL~-----~lDg~---~~~~~ViVIaATNrpd~LDpALlRpGRFD~~I~i~lPd~~ 383 (467)
T 4b4t_H 314 VGGARFDDGA--GGDNEVQRTMLELIT-----QLDGF---DPRGNIKVMFATNRPNTLDPALLRPGRIDRKVEFSLPDLE 383 (467)
T ss_dssp TSBCCSSSSC--GGGGHHHHHHHHHHH-----HHHSS---CCTTTEEEEEECSCTTSBCHHHHSTTTCCEEECCCCCCHH
T ss_pred ccccccCcCC--CccHHHHHHHHHHHH-----Hhhcc---CCCCcEEEEeCCCCcccCChhhhccccccEEEEeCCcCHH
Confidence 9988754322 112222233333333 45555 567889999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+|.+||+.++++ .+++.+.|++.+++|+|++|. ++|..+...++++
T Consensus 384 ~R~~Ilk~~l~~~~l~~dvdl~~LA~~T~GfSGADI~---~l~~eAa~~Air~ 433 (467)
T 4b4t_H 384 GRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRA 433 (467)
T ss_dssp HHHHHHHHHHTTSCBCSSCCHHHHHHHCCSCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCCCCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999988876 457788999999999999988 7777776666553
No 6
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5e-38 Score=329.64 Aligned_cols=190 Identities=22% Similarity=0.352 Sum_probs=161.9
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|. ..+||||||||+|+
T Consensus 210 ~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~~~vGese~~ir~lF~~A~----~~aP~IifiDEiDa 285 (434)
T 4b4t_M 210 MGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAK----EKAPTIIFIDELDA 285 (434)
T ss_dssp HCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCSSCSSHHHHHHHHHHHHHH----HHCSEEEEEECTHH
T ss_pred CCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhhcccchHHHHHHHHHHHHH----hcCCeEEeecchhh
Confidence 37899999999999999999999999999999999999999999999999999999999998 88999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++++|.... ....+.+..++..++. +|+|+ ....+|+||+|||+|+.|||||+||||||+.|+ +|+.+
T Consensus 286 l~~~R~~~~--~~~~~~~~~~~~~lL~-----~ldg~---~~~~~ViVIaaTNrp~~LD~AllRpGRfD~~I~i~lPd~~ 355 (434)
T 4b4t_M 286 IGTKRFDSE--KSGDREVQRTMLELLN-----QLDGF---SSDDRVKVLAATNRVDVLDPALLRSGRLDRKIEFPLPSED 355 (434)
T ss_dssp HHCCCSSGG--GGTTHHHHHHHHHHHH-----HHTTS---CSSCSSEEEEECSSCCCCCTTTCSTTSEEEEEECCCCCHH
T ss_pred hhhccCCCC--CCCchHHHHHHHHHHH-----Hhhcc---CCCCCEEEEEeCCCchhcCHhHhcCCceeEEEEeCCcCHH
Confidence 998875422 2222333344444444 56676 556789999999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 310 DRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 310 eR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+|.+||+.++++ .+++.+.+++.+++|+|+++. ++|..+...++++
T Consensus 356 ~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~sGADi~---~l~~eA~~~a~r~ 405 (434)
T 4b4t_M 356 SRAQILQIHSRKMTTDDDINWQELARSTDEFNGAQLK---AVTVEAGMIALRN 405 (434)
T ss_dssp HHHHHHHHHHHHSCBCSCCCHHHHHHHCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCCcCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHc
Confidence 999999987764 567888999999999999988 7777776666553
No 7
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.9e-37 Score=320.64 Aligned_cols=188 Identities=21% Similarity=0.286 Sum_probs=158.4
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|+++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++.+|..|+ ..+||||||||+|+
T Consensus 201 ~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~~~~Ge~e~~ir~lF~~A~----~~aP~IifiDEiD~ 276 (428)
T 4b4t_K 201 IGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLAR----ENAPSIIFIDEVDS 276 (428)
T ss_dssp HCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCCSSCSHHHHHHHHHHHHHH----HTCSEEEEEECTHH
T ss_pred CCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhccccchhHHHHHHHHHHHH----HcCCCeeechhhhh
Confidence 47899999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccccCCCCCcc-chhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe---cCC
Q 011983 232 GAGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW---APT 307 (473)
Q Consensus 232 l~~~r~~~~~~-~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~---~P~ 307 (473)
+++.|...... +...+++...|++ ++||+ ....+|+||+|||+++.|||||+||||||+.|+ +|+
T Consensus 277 i~~~R~~~~~~~~~~~~r~l~~lL~--------~ldg~---~~~~~v~vI~aTN~~~~LD~AllRpGRfd~~I~~p~lPd 345 (428)
T 4b4t_K 277 IATKRFDAQTGSDREVQRILIELLT--------QMDGF---DQSTNVKVIMATNRADTLDPALLRPGRLDRKIEFPSLRD 345 (428)
T ss_dssp HHCSCSSSCSCCCCHHHHHHHHHHH--------HHHHS---CSSCSEEEEEEESCSSSCCHHHHSSSSEEEEEECCSSCC
T ss_pred hhccccCCCCCCChHHHHHHHHHHH--------HhhCC---CCCCCEEEEEecCChhhcChhhhcCCcceEEEEcCCCCC
Confidence 99877532221 2222333333444 34555 456789999999999999999999999999987 379
Q ss_pred HHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHH
Q 011983 308 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVR 357 (473)
Q Consensus 308 ~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~ 357 (473)
.++|..||+.++.+ .+++.+.++..+++|+|+++. ++|..+...+++
T Consensus 346 ~~~R~~Il~~~~~~~~l~~~~dl~~lA~~t~G~sgadi~---~l~~eA~~~a~r 396 (428)
T 4b4t_K 346 RRERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVR 396 (428)
T ss_dssp HHHHHHHHHHHHHSSCBCTTCCHHHHHHHTTTCCHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCcccCHHHHHHHCCCCCHHHHH---HHHHHHHHHHHH
Confidence 99999999988865 457788999999999999888 777776666554
No 8
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-36 Score=338.53 Aligned_cols=248 Identities=20% Similarity=0.297 Sum_probs=149.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+.++|+|+|||||||||||++|+++|++++.+|+.++++++.++|+|++++.++++|+.|+ ..+||||||||||+
T Consensus 506 ~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s~~vGese~~vr~lF~~Ar----~~~P~IifiDEiDs 581 (806)
T 3cf2_A 506 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDS 581 (806)
T ss_dssp SCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHTTTCSSCHHHHHHHHHHHH----TTCSEEEECSCGGG
T ss_pred cCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhccccchHHHHHHHHHHHHH----HcCCceeechhhhH
Confidence 36789999999999999999999999999999999999999999999999999999999998 89999999999999
Q ss_pred ccccCCCCC--ccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 232 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 232 l~~~r~~~~--~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
+++.|+... ......+.++++|.+ |||+ ....+|+||+|||+|+.||+||+||||||+.|+ +|+
T Consensus 582 l~~~R~~~~~~~~~~~~rv~~~lL~~---------mdg~---~~~~~V~vi~aTN~p~~lD~AllRpgRfd~~i~v~lPd 649 (806)
T 3cf2_A 582 IAKARGGNIGDGGGAADRVINQILTE---------MDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649 (806)
T ss_dssp CC--------------CHHHHHHHHH---------HHSS---CSSSSEEEECC-CCSSSSCHHHHSTTTSCCEEEC----
T ss_pred HhhccCCCCCCCchHHHHHHHHHHHH---------HhCC---CCCCCEEEEEeCCCchhCCHhHcCCCcceEEEEECCcC
Confidence 998876322 222334556555543 4455 556789999999999999999999999999999 599
Q ss_pred HHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccC-CCCCCCc
Q 011983 308 REDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS-KEGPPTF 382 (473)
Q Consensus 308 ~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~-~~~~p~f 382 (473)
.++|.+||+.++++ .+++.+.+++.+++|+|++|. ++|..+...++++.++...........-.. .......
T Consensus 650 ~~~R~~il~~~l~~~~~~~~~dl~~la~~t~g~SGadi~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 726 (806)
T 3cf2_A 650 EKSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDD 726 (806)
T ss_dssp -CHHHHTTTTTSSCC--CCC----------------CHH---HHHHHHHHHHHHHHHC----------------------
T ss_pred HHHHHHHHHHHhcCCCCCCCCCHHHHHHhCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhhccCcccccccccc
Confidence 99999999999876 356777899999999999999 999999999999887653111100000000 0000001
Q ss_pred CCCccc---HHHHHHHHhhhhhhHHHHHHHHHHHHHhhh
Q 011983 383 EQPKMT---LDKLLEYGRMLVQEQENVKRVQLADKYLSE 418 (473)
Q Consensus 383 ~~~~~t---~e~ll~~~~~~v~eqe~v~~~~l~~~~~~~ 418 (473)
..+.++ ++..++..++.|.+++...|.+|.++|.+.
T Consensus 727 ~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~~ 765 (806)
T 3cf2_A 727 PVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQS 765 (806)
T ss_dssp -CCC----CCTTTC---------------CCCC------
T ss_pred ccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhcc
Confidence 112233 334567778889998888898888887554
No 9
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=1.6e-32 Score=306.43 Aligned_cols=221 Identities=21% Similarity=0.286 Sum_probs=179.4
Q ss_pred hhccccCCCCChhhHHHHHHHHHH-hhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCCh
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~ 201 (473)
|+++.+-.....++.+.+...+.. ......++++|+|||||||||||||++|++||++++.+|+.++++++.++|+|++
T Consensus 203 ~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~sk~~ges 282 (806)
T 3cf2_A 203 YDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp GGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHSSCTTHH
T ss_pred hhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhcccchHH
Confidence 776655433333443333222222 1223457899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEE
Q 011983 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281 (473)
Q Consensus 202 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIa 281 (473)
++.++.+|+.|. +++||||||||||++++++++. ...... .+.+.|+.+++ |+ ....+|+||+
T Consensus 283 e~~lr~lF~~A~----~~~PsIIfIDEiDal~~~r~~~-~~~~~~-riv~~LL~~md--------g~---~~~~~V~VIa 345 (806)
T 3cf2_A 283 ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREKT-HGEVER-RIVSQLLTLMD--------GL---KQRAHVIVMA 345 (806)
T ss_dssp HHHHHHHHHHHT----TSCSEEEEEESGGGTCCTTTTC-CCTTHH-HHHHHHHTHHH--------HC---CGGGCEEEEE
T ss_pred HHHHHHHHHHHH----HcCCeEEEEehhcccccccCCC-CChHHH-HHHHHHHHHHh--------cc---cccCCEEEEE
Confidence 999999999998 9999999999999999887642 333344 44445555444 33 3356899999
Q ss_pred ecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHH
Q 011983 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355 (473)
Q Consensus 282 TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~a 355 (473)
|||+++.||++|+|+||||+.|+ +|+.++|.+||+.++.+ .+++.+.++..+.+|+|+++. +++.++...+
T Consensus 346 aTN~~d~LD~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~~dvdl~~lA~~T~GfsgaDL~---~Lv~eA~~~A 422 (806)
T 3cf2_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQA 422 (806)
T ss_dssp ECSSTTTSCTTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEECTTCCHHHHHHHCCSCCHHHHH---HHHHHHHHHH
T ss_pred ecCChhhcCHHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCCcccCHHHHHHhcCCCCHHHHH---HHHHHHHHHH
Confidence 99999999999999999999999 59999999999988876 567888999999999999998 8999998888
Q ss_pred HHHHHHHh
Q 011983 356 VRKWISEV 363 (473)
Q Consensus 356 v~~~i~~~ 363 (473)
+++....+
T Consensus 423 ~~r~~~~i 430 (806)
T 3cf2_A 423 IRKKMDLI 430 (806)
T ss_dssp HHHHHHHG
T ss_pred HHhccccc
Confidence 88877664
No 10
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.96 E-value=3.7e-29 Score=252.93 Aligned_cols=243 Identities=18% Similarity=0.263 Sum_probs=179.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
+..+|+++|||||||||||++|+++|+++ +.+|+.++++++.++|.|+.++.++.+|..|. ..+|+||||||+|.
T Consensus 41 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~~~~g~~~~~~~~lf~~a~----~~~~~vl~iDEid~ 116 (322)
T 1xwi_A 41 KRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDS 116 (322)
T ss_dssp TCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCCSSCCSCHHHHHHHHHHHH----HTSSEEEEEETTTG
T ss_pred CCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHhhhhhHHHHHHHHHHHHHH----hcCCcEEEeecHHH
Confidence 35678999999999999999999999999 89999999999999999999999999999887 88999999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+.+.+... ......+.+++ |+..++ |. .....+++||+|||+++.||++|+| ||+..++ +|+.+
T Consensus 117 l~~~~~~~-~~~~~~~~~~~-ll~~ld--------~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~ 182 (322)
T 1xwi_A 117 LCGSRSEN-ESEAARRIKTE-FLVQMQ--------GV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEPH 182 (322)
T ss_dssp GGCCSSSC-CTTHHHHHHHH-HHHHHH--------CS--SSCCTTEEEEEEESCTTTSCHHHHH--TCCEEEECCCCCHH
T ss_pred hccccccc-cchHHHHHHHH-HHHHHh--------cc--cccCCCEEEEEecCCcccCCHHHHh--hcCeEEEeCCcCHH
Confidence 98876532 22333344444 444333 22 1235789999999999999999999 9999888 59999
Q ss_pred HHHHHHHhhcCCCC--CCHH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhh-----------hhc
Q 011983 310 DRIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK-----------RLV 373 (473)
Q Consensus 310 eR~~Il~~~l~~~~--v~~~---~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~-----------~lv 373 (473)
+|.+||+.++...+ ++.. .+++.+++|+|+++. +++.++...++++.+.......... ...
T Consensus 183 ~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (322)
T 1xwi_A 183 ARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADIS---IIVRDALMQPVRKVQSATHFKKVRGPSRADPNHLVDDLL 259 (322)
T ss_dssp HHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHH---HHHHHHHTHHHHHHHHCSEEEEEEEECSSCTTSEEEEEE
T ss_pred HHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccc
Confidence 99999999887643 3444 555666778888887 8888888888888765421110000 000
Q ss_pred c-CC------------C-CCCCcCCCcccHHHHHHHH---hhhhhhHHHHHHHHHHHHHh
Q 011983 374 N-SK------------E-GPPTFEQPKMTLDKLLEYG---RMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 374 ~-~~------------~-~~p~f~~~~~t~e~ll~~~---~~~v~eqe~v~~~~l~~~~~ 416 (473)
. .. . .......+.++.+++.++. ++.+.+++...|.+|.++|.
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~ 319 (322)
T 1xwi_A 260 TPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFG 319 (322)
T ss_dssp EECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTC
T ss_pred ccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 0 00 0 0001123457777765554 45688888888988888874
No 11
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.96 E-value=6.5e-29 Score=250.42 Aligned_cols=244 Identities=21% Similarity=0.294 Sum_probs=180.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..+|+++|||||||||||++|+++|++++.+|+.++++++.++|+|+.++.++.+|..|. ..+|+||||||+|.+
T Consensus 47 ~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 122 (322)
T 3eie_A 47 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 122 (322)
T ss_dssp TCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTTTGGGHHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhcccchHHHHHHHHHHHHH----hcCCeEEEechhhhh
Confidence 4577899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
.+.+... +..... .+...|+..++ + ......+++||+|||+++.||++|+| ||+..++ +|+.++
T Consensus 123 ~~~~~~~-~~~~~~-~~~~~ll~~l~--------~--~~~~~~~v~vi~atn~~~~ld~al~~--Rf~~~i~~~~p~~~~ 188 (322)
T 3eie_A 123 TGTRGEG-ESEASR-RIKTELLVQMN--------G--VGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 188 (322)
T ss_dssp SCC-------CCTH-HHHHHHHHHHG--------G--GGTSCCCEEEEEEESCGGGSCHHHHH--HCCEEEECCCCCHHH
T ss_pred hccCCCC-cchHHH-HHHHHHHHHhc--------c--ccccCCceEEEEecCChhhCCHHHHc--ccCeEEEeCCCCHHH
Confidence 8876432 222333 34444545444 1 12346789999999999999999999 9999888 699999
Q ss_pred HHHHHHhhcCCCC--CCHH---HHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhh------hhcc-C---
Q 011983 311 RIGVCSGIFRTDN--VPKE---DIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK------RLVN-S--- 375 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~~~---~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~------~lv~-~--- 375 (473)
|.+||+.++.... ++.. .++..+++|+|+++. +++..+...++++....+....+.. .+.. .
T Consensus 189 r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~---~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (322)
T 3eie_A 189 RTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGD 265 (322)
T ss_dssp HHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHH---HHHHHHTTHHHHHHHHCEEEEECC----CCCCEEECCSSC
T ss_pred HHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhhhhhhhhccccccccccccccccc
Confidence 9999999987654 3444 455566777777777 8888888888888877643222110 0000 0
Q ss_pred ---------CCCCCCcCCCcccHHHHHHH---HhhhhhhHHHHHHHHHHHHHhh
Q 011983 376 ---------KEGPPTFEQPKMTLDKLLEY---GRMLVQEQENVKRVQLADKYLS 417 (473)
Q Consensus 376 ---------~~~~p~f~~~~~t~e~ll~~---~~~~v~eqe~v~~~~l~~~~~~ 417 (473)
.-.......+.++.+++.++ .++.+...+...|.+|.++|.+
T Consensus 266 ~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 319 (322)
T 3eie_A 266 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 319 (322)
T ss_dssp TTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC-
T ss_pred cccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcC
Confidence 00011122345777776554 4566888888899999988854
No 12
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.96 E-value=1.7e-28 Score=245.25 Aligned_cols=244 Identities=20% Similarity=0.292 Sum_probs=179.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..++.++|||||||||||++|+++|++++.+|+.++++++.++|+|+.++.++.+|..|. ...|+||||||+|.+
T Consensus 45 ~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~p~il~iDEid~l 120 (301)
T 3cf0_A 45 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 120 (301)
T ss_dssp CCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHHHHHTTCTTHHHHHHHHHH----HTCSEEEEECSTTHH
T ss_pred CCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHhhhcCchHHHHHHHHHHHH----hcCCeEEEEEChHHH
Confidence 5678999999999999999999999999999999999999999999999999999999987 788999999999999
Q ss_pred cccCCCCCc--cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~~~--~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
...++.... .....+.+ ..|+..++ +. ....+++||+|||+++.||++++|+|||+..++ .|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~-~~lL~~l~--------~~---~~~~~v~vi~atn~~~~ld~al~r~gRf~~~i~i~~p~~ 188 (301)
T 3cf0_A 121 AKARGGNIGDGGGAADRVI-NQILTEMD--------GM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDE 188 (301)
T ss_dssp HHHHTTTTCCSSCSCCHHH-HHHHHHHH--------SS---CTTSSEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCCH
T ss_pred hhccCCCcCCcchHHHHHH-HHHHHHhh--------cc---cCCCCEEEEEecCCccccChHHhcCCccceEEecCCcCH
Confidence 876432111 11223334 44555444 22 235689999999999999999999999999888 5999
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccC-CCCCCCcC
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNS-KEGPPTFE 383 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~-~~~~p~f~ 383 (473)
++|.+|++.++.. .+++.+.++..+.+|+|+++. .++.+++..++++.+............... ........
T Consensus 189 ~~r~~il~~~l~~~~~~~~~~~~~la~~~~g~sg~dl~---~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (301)
T 3cf0_A 189 KSRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDP 265 (301)
T ss_dssp HHHHHHHHHHHTTSCBCSSCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHHHHHHHC--------------------
T ss_pred HHHHHHHHHHHccCCCCccchHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhhccccccccccccccc
Confidence 9999999988875 356778888889999999887 888888888887766542110000000000 00000011
Q ss_pred CCcccHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Q 011983 384 QPKMTLDKLLEYGRM---LVQEQENVKRVQLADKY 415 (473)
Q Consensus 384 ~~~~t~e~ll~~~~~---~v~eqe~v~~~~l~~~~ 415 (473)
.+.++.+++.++... .+.+.+...|..|.++|
T Consensus 266 ~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~ 300 (301)
T 3cf0_A 266 VPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTL 300 (301)
T ss_dssp CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 235666676655544 47777777888887776
No 13
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=2.5e-28 Score=250.11 Aligned_cols=244 Identities=20% Similarity=0.296 Sum_probs=172.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..+++++|||||||||||++|+++|++++.+|+.++++++.+.|.|+.++.++.+|..|. ..+|+||||||+|.+
T Consensus 80 ~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 155 (355)
T 2qp9_X 80 NRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMAR----ENKPSIIFIDQVDAL 155 (355)
T ss_dssp SCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSCC---CHHHHHHHHHHHH----HTSSEEEEEECGGGG
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4578899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
.+.++.. +.... +.+...|+..++ + ......+++||+|||+++.||++++| ||+..++ +|+.++
T Consensus 156 ~~~r~~~-~~~~~-~~~~~~ll~~l~--------~--~~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 221 (355)
T 2qp9_X 156 TGTRGEG-ESEAS-RRIKTELLVQMN--------G--VGNDSQGVLVLGATNIPWQLDSAIRR--RFERRIYIPLPDLAA 221 (355)
T ss_dssp TC-------CTHH-HHHHHHHHHHHH--------H--CC---CCEEEEEEESCGGGSCHHHHH--TCCEEEECCCCCHHH
T ss_pred cccCCCC-cchHH-HHHHHHHHHHhh--------c--ccccCCCeEEEeecCCcccCCHHHHc--ccCEEEEeCCcCHHH
Confidence 8776532 22233 334444555444 1 12335689999999999999999999 9999888 599999
Q ss_pred HHHHHHhhcCCCC--CCH---HHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhh------hhc------
Q 011983 311 RIGVCSGIFRTDN--VPK---EDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK------RLV------ 373 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~~---~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~------~lv------ 373 (473)
|.+||+.++...+ ++. +.|+..+.+|+|+++. +++.+++..++++.........+.. ...
T Consensus 222 r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~---~l~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (355)
T 2qp9_X 222 RTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIA---VVVKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGD 298 (355)
T ss_dssp HHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHHHHHHHHHHCSEEEECCC-----CCEEEECTTS
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHHhhhhhhhccccccccccCcCCccc
Confidence 9999999987654 333 3566677788888887 7888888888877654421110000 000
Q ss_pred ----c-CC-C-CCCCcCCCcccHHHHHHH---HhhhhhhHHHHHHHHHHHHHhh
Q 011983 374 ----N-SK-E-GPPTFEQPKMTLDKLLEY---GRMLVQEQENVKRVQLADKYLS 417 (473)
Q Consensus 374 ----~-~~-~-~~p~f~~~~~t~e~ll~~---~~~~v~eqe~v~~~~l~~~~~~ 417 (473)
. .. . .......+.++.+++..+ .++.+.+++...|.+|.++|..
T Consensus 299 ~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~~~~~ 352 (355)
T 2qp9_X 299 DGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQ 352 (355)
T ss_dssp SSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHHHTC-
T ss_pred cchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 0 00 0 000112334666666554 4456888888899999888843
No 14
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.95 E-value=5.6e-28 Score=239.26 Aligned_cols=190 Identities=24% Similarity=0.378 Sum_probs=150.7
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+..+|+|+||+||||||||+|++++|.+++..++.+++.++.+.+.|+.++.++.+|+.+. ...|+++||||+|.
T Consensus 39 ~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~----~~~p~i~~~Deid~ 114 (274)
T 2x8a_A 39 LGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNMYVGESERAVRQVFQRAK----NSAPCVIFFDEVDA 114 (274)
T ss_dssp TTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSSTTHHHHHHHHHHHHHHH----HTCSEEEEEETCTT
T ss_pred cCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhhhhhHHHHHHHHHHHHHH----hcCCCeEeeehhhh
Confidence 46788999999999999999999999999999999999999999999999999999999887 78899999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
++..++.. ......+.+++ ++. +|+|. .....++++++||+|+.||++++||||||+.++ +|+.+
T Consensus 115 ~~~~r~~~-~~~~~~~~~~~-~l~--------~Lsgg---~~~~~~i~ia~tn~p~~LD~al~r~gRfd~~i~~~~P~~~ 181 (274)
T 2x8a_A 115 LCPRRSDR-ETGASVRVVNQ-LLT--------EMDGL---EARQQVFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181 (274)
T ss_dssp TCC----------CTTHHHH-HHH--------HHHTC---CSTTCEEEEEEESCGGGSCHHHHSTTSSCEEEECCSCCHH
T ss_pred hhcccCCC-cchHHHHHHHH-HHH--------hhhcc---cccCCEEEEeecCChhhCCHhhcCcccCCeEEEeCCcCHH
Confidence 88654321 11111233333 333 23444 445678899999999999999999999999999 59999
Q ss_pred HHHHHHHhhcCC-------CCCCHHHHHHH--HhcCCCCchhhHHHHHHHhhHHHHHHHHH
Q 011983 310 DRIGVCSGIFRT-------DNVPKEDIVKL--VDTFPGQSIDFFGALRARVYDDEVRKWIS 361 (473)
Q Consensus 310 eR~~Il~~~l~~-------~~v~~~~l~~l--~~~~sga~l~f~gal~~~~~~~av~~~i~ 361 (473)
+|.+||+.++.. .+++.+.++.. +++|+|+++. ++|.+++..++++.+.
T Consensus 182 ~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~---~l~~~a~~~a~~~~~~ 239 (274)
T 2x8a_A 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLS---ALVREASICALRQEMA 239 (274)
T ss_dssp HHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHH---HHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHH---HHHHHHHHHHHHHHHh
Confidence 999999988743 35666677765 4599999998 8888888777776543
No 15
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.95 E-value=2.8e-27 Score=249.24 Aligned_cols=242 Identities=18% Similarity=0.250 Sum_probs=170.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
..+|+++|||||||||||++|+++|+++ +.+|+.++++++.+.|+|+.++.++.+|..|. ..+|+||||||||.+
T Consensus 164 ~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~----~~~~~vl~iDEid~l 239 (444)
T 2zan_A 164 RTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLAR----ENKPSIIFIDEIDSL 239 (444)
T ss_dssp GCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC---------CCCTHHHHHHHHH----HSCSEEEEESCTTTT
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhhcchHHHHHHHHHHHHH----HcCCeEEEEechHhh
Confidence 4678999999999999999999999999 89999999999999999999999999999887 889999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
++.+... ..... +.+...|+.. +++. .....+++||+|||+++.||++|+| ||+..++ +|+.++
T Consensus 240 ~~~~~~~-~~~~~-~~~~~~lL~~--------l~~~--~~~~~~v~vI~atn~~~~ld~al~r--Rf~~~i~i~~P~~~~ 305 (444)
T 2zan_A 240 CGSRSEN-ESEAA-RRIKTEFLVQ--------MQGV--GVDNDGILVLGATNIPWVLDSAIRR--RFEKRIYIPLPEAHA 305 (444)
T ss_dssp CCCSSCC-CCGGG-HHHHHHHHTT--------TTCS--SCCCSSCEEEEEESCGGGSCHHHHT--TCCEEEECCCCCHHH
T ss_pred ccCCCCc-cccHH-HHHHHHHHHH--------HhCc--ccCCCCEEEEecCCCccccCHHHHh--hcceEEEeCCcCHHH
Confidence 8876532 22233 3444445443 3333 1235789999999999999999999 9998888 599999
Q ss_pred HHHHHHhhcCCCC--CC---HHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhh-----------hhc-
Q 011983 311 RIGVCSGIFRTDN--VP---KEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGK-----------RLV- 373 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~---~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~-----------~lv- 373 (473)
|..||+.++...+ ++ .+.++..+++|+|+++. +++.+++..++++.+.......+.. .+.
T Consensus 306 r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~---~l~~~a~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (444)
T 2zan_A 306 RAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADIS---IIVRDALMQPVRKVQSATHFKKVRGPSRADPNCIVNDLLT 382 (444)
T ss_dssp HHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHHHHHCSEEEEECCBCSSCTTSBCSCEEE
T ss_pred HHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHHhhhhhhhhccccccccccccccccc
Confidence 9999999887643 33 34667777888888888 8888888888888776421111000 000
Q ss_pred ------------cCCC-CCCCcCCCcccHHHHHHHH---hhhhhhHHHHHHHHHHHHHh
Q 011983 374 ------------NSKE-GPPTFEQPKMTLDKLLEYG---RMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 374 ------------~~~~-~~p~f~~~~~t~e~ll~~~---~~~v~eqe~v~~~~l~~~~~ 416 (473)
+... .......+.++.+++..+. ++.+.+++...|.+|.++|.
T Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~ 441 (444)
T 2zan_A 383 PCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFG 441 (444)
T ss_dssp EECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCT
T ss_pred cCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHc
Confidence 0000 0011223467777775554 45688888888877776663
No 16
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.94 E-value=5.4e-27 Score=249.05 Aligned_cols=184 Identities=21% Similarity=0.271 Sum_probs=144.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+.+.|+++||+||||||||++|+++|++++.+|+.++++++...++|..+..++.+|..|. ..+||||||||+|+
T Consensus 44 ~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~~g~~~~~~r~lf~~A~----~~~p~ILfIDEid~ 119 (476)
T 2ce7_A 44 IGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAK----AHAPCIVFIDEIDA 119 (476)
T ss_dssp TTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCCTTHHHHHHHHHHHHHH----HTCSEEEEEETGGG
T ss_pred cCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHHhcccHHHHHHHHHHHH----hcCCCEEEEechhh
Confidence 36788999999999999999999999999999999999999999999999999999999997 88999999999999
Q ss_pred ccccCCCCC--ccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 232 GAGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 232 l~~~r~~~~--~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
+...++... ......+.++++|.. ++ |+ ....+++||+|||+++.||++++|+||||+.+. .|+
T Consensus 120 l~~~r~~~~~g~~~~~~~~l~~LL~~-ld--------~~---~~~~~viVIaaTn~~~~Ld~allR~gRFd~~i~i~~Pd 187 (476)
T 2ce7_A 120 VGRHRGAGLGGGHDEREQTLNQLLVE-MD--------GF---DSKEGIIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187 (476)
T ss_dssp TCCC---------CHHHHHHHHHHHH-HH--------HS---CGGGTEEEEEEESCGGGSCGGGGSTTSSCEEEECCCCC
T ss_pred hhhhcccccCcCcHHHHHHHHHHHHH-Hh--------cc---CCCCCEEEEEecCChhhhchhhcccCcceeEeecCCCC
Confidence 987754211 111222344444433 32 22 234679999999999999999999999999888 599
Q ss_pred HHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011983 308 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~ 354 (473)
.++|.+|++.++... +++.+.++..+.+|+|+++. .++.++...
T Consensus 188 ~~~R~~Il~~~~~~~~l~~~v~l~~la~~t~G~sgadL~---~lv~~Aal~ 235 (476)
T 2ce7_A 188 MLGRKKILEIHTRNKPLAEDVNLEIIAKRTPGFVGADLE---NLVNEAALL 235 (476)
T ss_dssp HHHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCcchhhHHHHHHhcCCCcHHHHH---HHHHHHHHH
Confidence 999999999888763 45566677777777777666 455444333
No 17
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.93 E-value=2.9e-26 Score=221.74 Aligned_cols=174 Identities=24% Similarity=0.366 Sum_probs=127.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+...|.++|||||||||||++|+++|++++.+++.++++++.+.+.|..+..++.+|..+. ...|+||||||+|.+
T Consensus 35 g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDeid~l 110 (262)
T 2qz4_A 35 GAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEAR----ARAPCIVYIDEIDAV 110 (262)
T ss_dssp -CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTTHHHHHHHHHHHHHH----HTCSEEEEEECC---
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccChhHHHHHHHHHHHH----hcCCeEEEEeCcchh
Confidence 5578999999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred cccCCCCCc---cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 233 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 233 ~~~r~~~~~---~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
...+..... .......+...| +.++ +. ....+++||+|||.++.||++++|+|||+..++ .|+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~l~~ll-~~~~--------~~---~~~~~~~vi~~tn~~~~ld~~l~~~~R~~~~i~i~~p~ 178 (262)
T 2qz4_A 111 GKKRSTTMSGFSNTEEEQTLNQLL-VEMD--------GM---GTTDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPT 178 (262)
T ss_dssp ----------------CHHHHHHH-HHHH--------TC---CTTCCEEEEEEESCGGGGGSGGGSTTSCCEEEECCSCC
T ss_pred hccccccccCccchhHHHHHHHHH-HHhh--------Cc---CCCCCEEEEecCCChhhcCHHHhcCCcCCeEEEeCCcC
Confidence 876532110 011122333333 3232 21 234689999999999999999999999999888 599
Q ss_pred HHHHHHHHHhhcCCCCCCH------HHHHHHHhcCCCCchh
Q 011983 308 REDRIGVCSGIFRTDNVPK------EDIVKLVDTFPGQSID 342 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~~v~~------~~l~~l~~~~sga~l~ 342 (473)
.++|.+|++.++...++.. +.++..+.+|+++++.
T Consensus 179 ~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~ 219 (262)
T 2qz4_A 179 LQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIA 219 (262)
T ss_dssp HHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHH
Confidence 9999999998887644432 2344445555555444
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.93 E-value=7.8e-26 Score=222.18 Aligned_cols=185 Identities=23% Similarity=0.335 Sum_probs=145.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..+|.++|||||||||||++|+++|++++.+++.++++++.+.+.|+....++.+|..+. ...|+||||||+|.+
T Consensus 47 ~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l 122 (285)
T 3h4m_A 47 GIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAK----EKAPSIIFIDEIDAI 122 (285)
T ss_dssp CCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCCCSTTHHHHHHHHHHHHHH----HTCSEEEEEETTHHH
T ss_pred CCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHHhccchHHHHHHHHHHHHH----HcCCeEEEEECHHHh
Confidence 5678899999999999999999999999999999999999999999999999999999887 889999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
..++.+... .........|..+++ .+++. ....+++||+|||.++.|+++++|++||+..+. .|+.++
T Consensus 123 ~~~~~~~~~--~~~~~~~~~l~~ll~-----~~~~~---~~~~~~~vI~ttn~~~~l~~~l~~~~Rf~~~i~~~~p~~~~ 192 (285)
T 3h4m_A 123 AAKRTDALT--GGDREVQRTLMQLLA-----EMDGF---DARGDVKIIGATNRPDILDPAILRPGRFDRIIEVPAPDEKG 192 (285)
T ss_dssp HBCCSSSCC--GGGGHHHHHHHHHHH-----HHHTT---CSSSSEEEEEECSCGGGBCHHHHSTTSEEEEEECCCCCHHH
T ss_pred cccCccccC--CccHHHHHHHHHHHH-----HhhCC---CCCCCEEEEEeCCCchhcCHHHcCCCcCCeEEEECCCCHHH
Confidence 876543211 112222333333333 22222 334689999999999999999999999999888 599999
Q ss_pred HHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHH
Q 011983 311 RIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDD 354 (473)
Q Consensus 311 R~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~ 354 (473)
|.+|++.++... ..+.+.++..+.+++++++. .++..+...
T Consensus 193 r~~il~~~~~~~~~~~~~~~~~l~~~~~g~~~~~i~---~l~~~a~~~ 237 (285)
T 3h4m_A 193 RLEILKIHTRKMNLAEDVNLEEIAKMTEGCVGAELK---AICTEAGMN 237 (285)
T ss_dssp HHHHHHHHHTTSCBCTTCCHHHHHHHCTTCCHHHHH---HHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHH
Confidence 999999888753 45567788888887777666 454444333
No 19
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.93 E-value=2.5e-25 Score=216.15 Aligned_cols=174 Identities=22% Similarity=0.299 Sum_probs=134.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.+.|+++|||||||||||++|+++|++++.+++.++++++...+.|+.++.++.+|+.|. ...|++|||||+|.+
T Consensus 41 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~il~iDeid~l 116 (257)
T 1lv7_A 41 GGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAK----KAAPCIIFIDEIDAV 116 (257)
T ss_dssp --CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTSCCCCCHHHHHHHHHHHH----TTCSEEEEETTHHHH
T ss_pred CCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHHhhhhhHHHHHHHHHHHH----HcCCeeehhhhhhhh
Confidence 4578899999999999999999999999999999999999999999999999999999887 788999999999999
Q ss_pred cccCCCCCccch-h-hHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGTTQYTV-N-NQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~~~~~~-~-~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
...+........ . .+.+...| ..++ +. ....+++||+|||+++.||++++|+|||++.+. .|+.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~ll-~~l~--------~~---~~~~~~~vI~~tn~~~~l~~~l~r~~rf~~~i~i~~P~~ 184 (257)
T 1lv7_A 117 GRQRGAGLGGGHDEREQTLNQML-VEMD--------GF---EGNEGIIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDV 184 (257)
T ss_dssp TCCCSTTSCCTTCHHHHHHHHHH-HHHH--------TC---CSSSCEEEEEEESCTTTSCGGGGSTTSSCEEEECCCCCH
T ss_pred ccCCCCCcCCCchHHHHHHHHHH-HHhh--------Cc---ccCCCEEEEEeeCCchhCCHHHcCCCcCCeEEEeCCCCH
Confidence 876542211111 1 23344333 3233 22 335679999999999999999999999999888 5999
Q ss_pred HHHHHHHHhhcCCCCCC----HHHHHHHHhcCCCCchh
Q 011983 309 EDRIGVCSGIFRTDNVP----KEDIVKLVDTFPGQSID 342 (473)
Q Consensus 309 eeR~~Il~~~l~~~~v~----~~~l~~l~~~~sga~l~ 342 (473)
++|.+|++.++...++. ...++..+.+|+++++.
T Consensus 185 ~~r~~il~~~~~~~~l~~~~~~~~la~~~~G~~~~dl~ 222 (257)
T 1lv7_A 185 RGREQILKVHMRRVPLAPDIDAAIIARGTPGFSGADLA 222 (257)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHhcCCCCccccHHHHHHHcCCCCHHHHH
Confidence 99999999888764433 33444444555544444
No 20
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.92 E-value=1.8e-25 Score=238.68 Aligned_cols=182 Identities=21% Similarity=0.291 Sum_probs=142.1
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.+.+.|+|+|||||||||||+||++||++++.+|+.++++++...++|...+.++.+|+.+. ...|+|+||||||.
T Consensus 59 lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~g~~~~~v~~lfq~a~----~~~p~il~IDEId~ 134 (499)
T 2dhr_A 59 MGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDA 134 (499)
T ss_dssp TSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCTTHHHHHHHHHTTTSS----SSSSCEEEEECGGG
T ss_pred ccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhhhhHHHHHHHHHHHHH----hcCCCEEEEehHHH
Confidence 45688999999999999999999999999999999999999999999999899999999775 67899999999999
Q ss_pred ccccCCCCCc--cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 232 GAGRMGGTTQ--YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 232 l~~~r~~~~~--~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
+...+..... .....+.+++.| . +++|. .....+++|++||+|+.||++|+|+||||+.+. .|+
T Consensus 135 l~~~r~~~~~~~~~e~~~~l~~LL-~--------~Ldg~---~~~~~viviAatn~p~~LD~aLlr~gRfdr~i~i~~Pd 202 (499)
T 2dhr_A 135 VGRKRGSGVGGGNDEREQTLNQLL-V--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPD 202 (499)
T ss_dssp TCCCSSSSTTTSSHHHHHHHHHHH-H--------HGGGC---CSSCCCEEEECCSCGGGSCTTTSSTTSSCCEEECCCCC
T ss_pred HHHhhccCcCCCcHHHHHHHHHHH-H--------Hhccc---ccCccEEEEEecCChhhcCcccccccccceEEecCCCC
Confidence 9876542111 111123344333 2 34454 445678999999999999999999999999988 599
Q ss_pred HHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhh
Q 011983 308 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVY 352 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~ 352 (473)
.++|.+||+.++... +++.+.++..+.+|+|+++. .++.++.
T Consensus 203 ~~~R~~IL~~~~~~~~l~~dv~l~~lA~~t~G~~gadL~---~lv~~Aa 248 (499)
T 2dhr_A 203 VKGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE---NLLNEAA 248 (499)
T ss_dssp HHHHHHHHHHTTSSSCCCCSSTTHHHHTTSCSCCHHHHH---HHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCChHHHHHHHHHhcCCCCHHHHH---HHHHHHH
Confidence 999999999887653 34455666666666666665 4444443
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.92 E-value=4.5e-25 Score=235.27 Aligned_cols=188 Identities=23% Similarity=0.315 Sum_probs=155.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..+|.++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.+..++.+|..|. ..+|++|||||||.+
T Consensus 234 g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~~g~~~~~~~~~f~~A~----~~~p~iLfLDEId~l 309 (489)
T 3hu3_A 234 GVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGESESNLRKAFEEAE----KNAPAIIFIDELDAI 309 (489)
T ss_dssp TCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSCTTHHHHHHHHHHHHHH----HTCSEEEEEESHHHH
T ss_pred CCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhhcchhHHHHHHHHHHHH----hcCCcEEEecchhhh
Confidence 5678999999999999999999999999999999999999999999999999999999987 889999999999999
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRED 310 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ee 310 (473)
.+++... . ......+...|+.+++ +. ....+++||+|||+++.||++++|+|||+..++ +|+.++
T Consensus 310 ~~~~~~~-~-~~~~~~~~~~LL~~ld--------~~---~~~~~v~vIaaTn~~~~Ld~al~r~gRf~~~i~i~~P~~~e 376 (489)
T 3hu3_A 310 APKREKT-H-GEVERRIVSQLLTLMD--------GL---KQRAHVIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATG 376 (489)
T ss_dssp CBCTTSC-C-CHHHHHHHHHHHHHHH--------HS---CTTSCEEEEEEESCGGGBCGGGGSTTSSCEEEECCCCCHHH
T ss_pred ccccccc-c-chHHHHHHHHHHHHhh--------cc---ccCCceEEEEecCCccccCHHHhCCCcCceEEEeCCCCHHH
Confidence 9876532 2 2233455566666665 11 345689999999999999999999999999888 599999
Q ss_pred HHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHH
Q 011983 311 RIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWI 360 (473)
Q Consensus 311 R~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i 360 (473)
|.+||+.++... +++.+.++..+.+|+++++. +++.++...++++..
T Consensus 377 R~~IL~~~~~~~~l~~~~~l~~la~~t~g~s~~dL~---~L~~~A~~~a~r~~~ 427 (489)
T 3hu3_A 377 RLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQAIRKKM 427 (489)
T ss_dssp HHHHHHHHTTTSCBCTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHhcCCCcchhhHHHHHHHccCCcHHHHH---HHHHHHHHHHHHhcc
Confidence 999999888753 44566778888888887777 777766666665433
No 22
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.92 E-value=3.7e-25 Score=226.45 Aligned_cols=230 Identities=17% Similarity=0.230 Sum_probs=160.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.+|+++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.+..++.+|..+. ..+|+||||||+|.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~vl~iDEid~l~~ 190 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVAR----CQQPAVIFIDEIDSLLS 190 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHH----HTCSEEEEEETHHHHTB
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEeCchhhhc
Confidence 67899999999999999999999999999999999999999999999999999999887 78899999999999987
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 312 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 312 (473)
.+... .... ...+...|+..++ +. ......+++||+|||+++.|+++++| ||+..++ +|+.++|.
T Consensus 191 ~~~~~-~~~~-~~~~~~~lL~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--Rf~~~i~i~~p~~~~r~ 257 (357)
T 3d8b_A 191 QRGDG-EHES-SRRIKTEFLVQLD--------GA-TTSSEDRILVVGATNRPQEIDEAARR--RLVKRLYIPLPEASARK 257 (357)
T ss_dssp C-------CH-HHHHHHHHHHHHH--------C-----CCCCEEEEEEESCGGGBCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCC-cchH-HHHHHHHHHHHHh--------cc-cccCCCCEEEEEecCChhhCCHHHHh--hCceEEEeCCcCHHHHH
Confidence 65422 1222 3334444444343 11 11235689999999999999999999 9998777 69999999
Q ss_pred HHHHhhcCCC--CCCHHH---HHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011983 313 GVCSGIFRTD--NVPKED---IVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387 (473)
Q Consensus 313 ~Il~~~l~~~--~v~~~~---l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~ 387 (473)
+|++.++... .++.+. ++..+.+|+++++. .++..++..++++.... . .+.+.. -....+
T Consensus 258 ~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~---~l~~~a~~~~ir~l~~~----~--~~~~~~------~~~~~i 322 (357)
T 3d8b_A 258 QIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMT---QLCREASLGPIRSLQTA----D--IATITP------DQVRPI 322 (357)
T ss_dssp HHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHH---HHHHHHHTHHHHHCCC----------------------CCCB
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHhhhh----h--hccccc------cccCCc
Confidence 9999888654 355554 44555666666665 56665555554432100 0 000000 011245
Q ss_pred cHHHHH---HHHhhhhhhHHHHHHHHHHHHHh
Q 011983 388 TLDKLL---EYGRMLVQEQENVKRVQLADKYL 416 (473)
Q Consensus 388 t~e~ll---~~~~~~v~eqe~v~~~~l~~~~~ 416 (473)
+.+++. ....+.+...+...+..|.+.|.
T Consensus 323 ~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g 354 (357)
T 3d8b_A 323 AYIDFENAFRTVRPSVSPKDLELYENWNKTFG 354 (357)
T ss_dssp CHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhC
Confidence 555554 44455566667777888888774
No 23
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=3.5e-27 Score=265.22 Aligned_cols=192 Identities=21% Similarity=0.345 Sum_probs=154.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+..++.++|||||||||||++|+++|++++.+|+.++++++.++|+|+.++.++.+|+.|. ...||||||||||++
T Consensus 507 ~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~----~~~p~vl~iDEid~l 582 (806)
T 1ypw_A 507 GMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLTMWFGESEANVREIFDKAR----QAAPCVLFFDELDSI 582 (806)
T ss_dssp CCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTTCCTTTSSHHHHHHHHHHH----HHCSBCCCCSSHHHH
T ss_pred CCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhhhhcCccHHHHHHHHHHHH----hcCCeEEEEEChhhh
Confidence 4567889999999999999999999999999999999999999999999999999999998 778999999999999
Q ss_pred cccCCCCCcc-chhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 233 AGRMGGTTQY-TVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 233 ~~~r~~~~~~-~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
+..+++.... ......+...|++ .|++. ....+++||+|||+++.||++++|||||+..++ .|+.+
T Consensus 583 ~~~r~~~~~~~~~~~~~v~~~LL~--------~ld~~---~~~~~v~vI~tTN~~~~ld~allrpgRf~~~i~~~~p~~~ 651 (806)
T 1ypw_A 583 AKARGGNIGDGGGAADRVINQILT--------EMDGM---STKKNVFIIGATNRPDIIDPAILRPGRLDQLIYIPLPDEK 651 (806)
T ss_dssp CCTTTTCCSHHHHHHHHHHHHHHT--------TCC---------CCBCCCCCBSCGGGSCTTSSGGGTTSCCCCCCCCCS
T ss_pred hhhccCCCCCcchhHHHHHHHHHH--------HHhcc---cccCCeEEEEecCCcccCCHHHhCccccCceeecCCCCHH
Confidence 8876542211 1123344445554 45555 456789999999999999999999999998888 59999
Q ss_pred HHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 310 DRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 310 eR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
+|.+||+.++... +++.+.+++.+.+|+|+++. +++..+...++++.++.
T Consensus 652 ~r~~Il~~~l~~~~~~~~~~l~~la~~t~g~sgadi~---~l~~~a~~~a~~~~~~~ 705 (806)
T 1ypw_A 652 SRVAILKANLRKSPVAKDVDLEFLAKMTNGFSGADLT---EICQRACKLAIRESIES 705 (806)
T ss_dssp HHHHHTTTTTSCC----CCCCSCSCGGGSSSCCHHHH---HHHHHHHHHHHSCC---
T ss_pred HHHHHHHHHhccCCCCcccCHHHHHHhccccCHHHHH---HHHHHHHHHHHHHHHHH
Confidence 9999999998763 45666788889999999988 78888888777765543
No 24
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.92 E-value=8.7e-25 Score=225.73 Aligned_cols=230 Identities=19% Similarity=0.267 Sum_probs=148.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.+++++|||||||||||++|++||++++.+|+.++++++.+.|.|+.+..++.+|..+. ...|+||||||||.++.
T Consensus 146 ~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~----~~~~~il~iDEid~l~~ 221 (389)
T 3vfd_A 146 APARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVAR----ELQPSIIFIDQVDSLLC 221 (389)
T ss_dssp CCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC-------CHHHHHHHHHHHH----HSSSEEEEEETGGGGC-
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHH----hcCCeEEEEECchhhcc
Confidence 46789999999999999999999999999999999999999999999999999999887 88999999999999987
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 312 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 312 (473)
.+... ......+.. ..|+..++ |. ......+++||+|||+++.|+++++| ||+..++ .|+.++|.
T Consensus 222 ~~~~~-~~~~~~~~~-~~ll~~l~--------~~-~~~~~~~v~vI~atn~~~~l~~~l~~--R~~~~i~i~~p~~~~r~ 288 (389)
T 3vfd_A 222 ERREG-EHDASRRLK-TEFLIEFD--------GV-QSAGDDRVLVMGATNRPQELDEAVLR--RFIKRVYVSLPNEETRL 288 (389)
T ss_dssp --------CTHHHHH-HHHHHHHH--------HH-C-----CEEEEEEESCGGGCCHHHHT--TCCEEEECCCCCHHHHH
T ss_pred cCCCc-cchHHHHHH-HHHHHHhh--------cc-cccCCCCEEEEEecCCchhcCHHHHc--CcceEEEcCCcCHHHHH
Confidence 65422 222233333 34444333 11 11235679999999999999999999 9997777 59999999
Q ss_pred HHHHhhcCCC--CCCHHHHHH---HHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011983 313 GVCSGIFRTD--NVPKEDIVK---LVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387 (473)
Q Consensus 313 ~Il~~~l~~~--~v~~~~l~~---l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~ 387 (473)
+||+.++... .++.+.+.. .+.+|+++++. .++..++..++++ +....+ +.+. .-....+
T Consensus 289 ~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~---~L~~~a~~~~~re----l~~~~~-~~~~-------~~~~~~i 353 (389)
T 3vfd_A 289 LLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLT---ALAKDAALGPIRE----LKPEQV-KNMS-------ASEMRNI 353 (389)
T ss_dssp HHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHT----SCCC----CCS-------SSCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh----hhhhhh-hccc-------hhhcCCc
Confidence 9999888764 355554444 45555555554 5555555444443 111110 0000 0112346
Q ss_pred cHHHHHHHHhh---hhhhHHHHHHHHHHHHHh
Q 011983 388 TLDKLLEYGRM---LVQEQENVKRVQLADKYL 416 (473)
Q Consensus 388 t~e~ll~~~~~---~v~eqe~v~~~~l~~~~~ 416 (473)
+.+++..+... .+..+....+.+|.+.|.
T Consensus 354 ~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g 385 (389)
T 3vfd_A 354 RLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385 (389)
T ss_dssp CHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 67776555443 345555666667766663
No 25
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.92 E-value=2.2e-24 Score=213.30 Aligned_cols=230 Identities=19% Similarity=0.264 Sum_probs=155.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.++.++|||||||||||++|+++|++++.+|+.++++++.+.+.|+.+..++.+|..+. ...|+||||||+|.+..
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~vl~iDEid~l~~ 127 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVAR----HMQPSIIFIDEVDSLLS 127 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSSSCSCHHHHHHHHHHHHH----HTCSEEEEEETGGGTSB
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhcccchHHHHHHHHHHHHH----HcCCcEEEeccHHHhcc
Confidence 46789999999999999999999999999999999999999999999999999999887 78999999999999987
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCHHHHH
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDRI 312 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~ 312 (473)
.+... ......+... .|+..++ .+.. .....+++||+|||+++.|+++++| ||+..++ +|+.++|.
T Consensus 128 ~~~~~-~~~~~~~~~~-~ll~~l~-----~~~~---~~~~~~v~vi~~tn~~~~l~~~l~~--R~~~~i~~~~p~~~~r~ 195 (297)
T 3b9p_A 128 ERSSS-EHEASRRLKT-EFLVEFD-----GLPG---NPDGDRIVVLAATNRPQELDEAALR--RFTKRVYVSLPDEQTRE 195 (297)
T ss_dssp CC------CCSHHHHH-HHHHHHH-----HCC---------CEEEEEEESCGGGBCHHHHH--HCCEEEECCCCCHHHHH
T ss_pred ccccC-cchHHHHHHH-HHHHHHh-----cccc---cCCCCcEEEEeecCChhhCCHHHHh--hCCeEEEeCCcCHHHHH
Confidence 65421 1222233333 3444333 1111 0223679999999999999999999 9988877 69999999
Q ss_pred HHHHhhcCCC--CCCHHH---HHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCCcc
Q 011983 313 GVCSGIFRTD--NVPKED---IVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQPKM 387 (473)
Q Consensus 313 ~Il~~~l~~~--~v~~~~---l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~~~ 387 (473)
.|++.++... .++.+. ++..+.+|+++++. +++..++..++++.... . .+.+. .-....+
T Consensus 196 ~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~---~l~~~a~~~a~r~~~~~----~-~~~~~-------~~~~~~i 260 (297)
T 3b9p_A 196 LLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLT---ALAKDAALEPIRELNVE----Q-VKCLD-------ISAMRAI 260 (297)
T ss_dssp HHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHH---HHHHHHTTHHHHTCC--------------------CCCCCCC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHHHhhh----h-ccccc-------ccccCCc
Confidence 9999887653 345554 44455666666665 55655555555432111 0 00000 0012356
Q ss_pred cHHHHHHHHhh---hhhhHHHHHHHHHHHHH
Q 011983 388 TLDKLLEYGRM---LVQEQENVKRVQLADKY 415 (473)
Q Consensus 388 t~e~ll~~~~~---~v~eqe~v~~~~l~~~~ 415 (473)
+.+++..+... .+..++...+.+|.+.|
T Consensus 261 ~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~ 291 (297)
T 3b9p_A 261 TEQDFHSSLKRIRRSVAPQSLNSYEKWSQDY 291 (297)
T ss_dssp CHHHHHHHTTSCCCSSCHHHHHHHHHHC---
T ss_pred CHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 77777766543 34455566666666666
No 26
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.91 E-value=4.8e-24 Score=206.68 Aligned_cols=174 Identities=21% Similarity=0.309 Sum_probs=131.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+...|+|++|+||||||||++++++++.++..++.+++.++...+.+...+.++.+|+.+. ...|+++||||+|.+
T Consensus 45 ~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~~Deid~l 120 (254)
T 1ixz_A 45 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAV 120 (254)
T ss_dssp TCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSCTTHHHHHHHHHHHHHT----TSSSEEEEEETHHHH
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHHHhhHHHHHHHHHHHHHH----hcCCeEEEehhhhhh
Confidence 5678899999999999999999999999999999999998888888888888999999875 678999999999998
Q ss_pred cccCCCCC--ccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~~--~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
...+.... ......+.+.. ++.. ++|. .....++++++||+|+.||++++|+|||++.++ .|+.
T Consensus 121 ~~~~~~~~~~~~~~~~~~~~~-ll~~--------l~g~---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 188 (254)
T 1ixz_A 121 GRKRGSGVGGGNDEREQTLNQ-LLVE--------MDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 188 (254)
T ss_dssp HC---------CHHHHHHHHH-HHHH--------HHTC---CTTCCEEEEEEESCGGGSCGGGGSTTSSCEEEECCSCCH
T ss_pred hcccCccccccchHHHHHHHH-HHHH--------HhCC---CCCCCEEEEEccCCchhCCHHHcCCCcCCeEEeeCCcCH
Confidence 76543210 11111233333 3332 3333 334567888999999999999999999999988 5999
Q ss_pred HHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchh
Q 011983 309 EDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 309 eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~ 342 (473)
++|.+||+.+.... +++...++..+.+|+|+++.
T Consensus 189 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 226 (254)
T 1ixz_A 189 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 226 (254)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 99999999877653 34455666666666655555
No 27
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.90 E-value=2.9e-25 Score=216.50 Aligned_cols=175 Identities=20% Similarity=0.293 Sum_probs=130.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+.+.|+++|||||||||||++|+++|++++.+++.++++.+.+.+.|..+..++.+|..|. ...|+||||||+|.+
T Consensus 40 ~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~a~----~~~~~vl~iDEid~l 115 (268)
T 2r62_A 40 GAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAK----KQAPSIIFIDEIDAI 115 (268)
T ss_dssp SCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTSCSSSCSSSSSTTHHHHH----HSCSCEEEESCGGGT
T ss_pred CCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHhhcchHHHHHHHHHHHHH----hcCCeEEEEeChhhh
Confidence 4577889999999999999999999999999999999999999999988888888999887 778999999999999
Q ss_pred cccCCCCCc---cchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 233 AGRMGGTTQ---YTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 233 ~~~r~~~~~---~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
...+..... .....+.+ ..|+. .+++. .....+++||+|||.++.||++++|+|||+..++ .|+
T Consensus 116 ~~~~~~~~~~~~~~~~~~~~-~~ll~--------~l~~~--~~~~~~v~vi~ttn~~~~ld~~l~r~~Rf~~~i~i~~p~ 184 (268)
T 2r62_A 116 GKSRAAGGVVSGNDEREQTL-NQLLA--------EMDGF--GSENAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKPD 184 (268)
T ss_dssp TC----------CCCSCSST-TTTTT--------TTTCS--SCSCSCCEEEECBSCCTTSCGGGGSSSSSCCCCBCCCCC
T ss_pred cccccccccCCCchhHHHHH-HHHHH--------HhhCc--ccCCCCEEEEEecCCchhcCHhHcCCCCCCeEEEecCcC
Confidence 876421100 00001111 12222 22222 1234568999999999999999999999998877 599
Q ss_pred HHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchh
Q 011983 308 REDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~ 342 (473)
.++|.+||+.++... +++.+.++..+.+|+|+++.
T Consensus 185 ~~~r~~il~~~~~~~~~~~~~~~~~la~~~~g~~g~dl~ 223 (268)
T 2r62_A 185 FNGRVEILKVHIKGVKLANDVNLQEVAKLTAGLAGADLA 223 (268)
T ss_dssp TTTHHHHHHHHTSSSCCCSSCCTTTTTSSSCSSCHHHHH
T ss_pred HHHHHHHHHHHHhcCCCCCccCHHHHHHHcCCCCHHHHH
Confidence 999999999888653 33445555556666654443
No 28
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.89 E-value=7.1e-23 Score=201.61 Aligned_cols=174 Identities=21% Similarity=0.303 Sum_probs=131.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+...|++++|+||||||||++++++++.++..++.+++.++...+.+...+.++.+|+.+. ...|+++||||+|.+
T Consensus 69 ~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~~~i~~iDeid~l 144 (278)
T 1iy2_A 69 GARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAK----RHAPCIVFIDEIDAV 144 (278)
T ss_dssp TCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHSTTTHHHHHHHHHHHHHH----TSCSEEEEEETHHHH
T ss_pred CCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHHhhHHHHHHHHHHHHHH----hcCCcEEehhhhHhh
Confidence 5677889999999999999999999999999999999988888888888888899999886 678999999999998
Q ss_pred cccCCCCC--ccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCCH
Q 011983 233 AGRMGGTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTR 308 (473)
Q Consensus 233 ~~~r~~~~--~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~~ 308 (473)
...+.... ......+.+.+.+ . +++|. .....++++++||+|+.||++++|++||++.++ .|+.
T Consensus 145 ~~~~~~~~~~~~~~~~~~~~~ll-~--------~lsgg---~~~~~~i~~a~t~~p~~ld~~l~r~~rf~~~i~i~~p~~ 212 (278)
T 1iy2_A 145 GRKRGSGVGGGNDEREQTLNQLL-V--------EMDGF---EKDTAIVVMAATNRPDILDPALLRPGRFDRQIAIDAPDV 212 (278)
T ss_dssp HCC--------CHHHHHHHHHHH-H--------HHTTC---CTTCCEEEEEEESCTTSSCHHHHSTTSSCCEEECCCCCH
T ss_pred hcccccccCCcchHHHHHHHHHH-H--------HHhCC---CCCCCEEEEEecCCchhCCHhHcCCCcCCeEEEeCCcCH
Confidence 76543210 0111122333333 2 24444 344567888999999999999999999999888 5999
Q ss_pred HHHHHHHHhhcCCCC----CCHHHHHHHHhcCCCCchh
Q 011983 309 EDRIGVCSGIFRTDN----VPKEDIVKLVDTFPGQSID 342 (473)
Q Consensus 309 eeR~~Il~~~l~~~~----v~~~~l~~l~~~~sga~l~ 342 (473)
++|.+||+.++.... ++...++..+.+++++++.
T Consensus 213 ~~r~~il~~~~~~~~~~~~~~~~~la~~~~G~~~~dl~ 250 (278)
T 1iy2_A 213 KGREQILRIHARGKPLAEDVDLALLAKRTPGFVGADLE 250 (278)
T ss_dssp HHHHHHHHHHHTTSCBCTTCCHHHHHHTCTTCCHHHHH
T ss_pred HHHHHHHHHHHccCCCCcccCHHHHHHHcCCCCHHHHH
Confidence 999999998876533 3444555555555555554
No 29
>3thg_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; four-helix bundle, rubisco reactivation, chloroplast stroma, ATPase; 1.88A {Larrea tridentata}
Probab=99.87 E-value=5.6e-22 Score=165.73 Aligned_cols=103 Identities=86% Similarity=1.362 Sum_probs=96.7
Q ss_pred CCHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHHHHHHhcchhhhhhhccCCCCCCCcCCC
Q 011983 306 PTREDRIGVCSGIFRTDNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWISEVGIERIGKRLVNSKEGPPTFEQP 385 (473)
Q Consensus 306 P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~~i~~~g~~~i~~~lv~~~~~~p~f~~~ 385 (473)
.++++|..|++.++..++++.+++.+|++.|++|.++|||||++|+|++++++|+..+|.++++++++++++++|+|++|
T Consensus 5 ~treDrigiv~gif~~Dgls~~dv~~LVd~Fp~QsiDFFGALRsR~YDd~Vr~wI~~vG~e~ig~~Lvns~e~~P~F~~P 84 (107)
T 3thg_A 5 FTREDRIGVCKGIFRTDNVADDDIVKLVDTFPGQSIDFFGALRARVYDDEVRKWVSEVGVDTIGKKLVNSKEGPPSFEQP 84 (107)
T ss_dssp CCHHHHHHHHHHHTTTTTCCHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCCCCCCCC
T ss_pred ccHHHHHHHHHHHhccCCCCHHHHHHHHHcCCCCCchHHHHHHHHHhHHHHHHHHHHhCHHHHhHHHHcCCCCCCCCCCC
Confidence 47899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHHHHHHHhhhhhhHHHHHH
Q 011983 386 KMTLDKLLEYGRMLVQEQENVKR 408 (473)
Q Consensus 386 ~~t~e~ll~~~~~~v~eqe~v~~ 408 (473)
++|+++|+++++++++||++|++
T Consensus 85 ~~tl~~Lle~G~~Lv~EQ~~V~~ 107 (107)
T 3thg_A 85 KMTIDKLLGYGGMLVQEQENVKR 107 (107)
T ss_dssp CCCHHHHHHHHHHHHTTC-----
T ss_pred cCCHHHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999974
No 30
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.86 E-value=6.2e-21 Score=214.51 Aligned_cols=215 Identities=20% Similarity=0.273 Sum_probs=162.3
Q ss_pred hhccccCCCCChhhHHHHHHHHHH-hhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCCh
Q 011983 123 LDNTLDGLYIAPAFMDKVVVHITK-NFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEP 201 (473)
Q Consensus 123 f~~~~~~~~i~~~~~d~~~~~i~k-~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~ 201 (473)
|+++.+-...-..+.+.+...+.. ......++.++.++|||||||||||++|++||++++.+++.+++.++.+.+.|+.
T Consensus 203 ~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~~~g~~ 282 (806)
T 1ypw_A 203 YDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKLAGES 282 (806)
T ss_dssp GGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSSSTTHH
T ss_pred HHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhhhhhhH
Confidence 666665433333333322222221 2233446789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEE
Q 011983 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281 (473)
Q Consensus 202 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIa 281 (473)
+..++.+|+.+. ...|++|||||+|.++..++. .. ....+.+...|+++++ |. ....++.+|+
T Consensus 283 ~~~l~~vf~~a~----~~~p~il~iDEid~l~~~~~~-~~-~~~~~~~~~~Ll~ll~--------g~---~~~~~v~vI~ 345 (806)
T 1ypw_A 283 ESNLRKAFEEAE----KNAPAIIFIDELDAIAPKREK-TH-GEVERRIVSQLLTLMD--------GL---KQRAHVIVMA 345 (806)
T ss_dssp HHHHHHHHHHHH----HHCSEEEEEESGGGTSCTTSC-CC-SHHHHHHHHHHHHHHH--------SS---CTTSCCEEEE
T ss_pred HHHHHHHHHHHH----hcCCcEEEeccHHHhhhcccc-cc-chHHHHHHHHHHHHhh--------hh---cccccEEEec
Confidence 999999999987 778999999999999887542 22 2233455566667665 22 3346899999
Q ss_pred ecCCCCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCCC----CCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHH
Q 011983 282 TGNDFSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRTD----NVPKEDIVKLVDTFPGQSIDFFGALRARVYDDE 355 (473)
Q Consensus 282 TTN~~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~~----~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~a 355 (473)
|||+++.||++++|+|||+..+. +|+.++|.+||+.++... +.+...++..+.+|+++++. +++..+...+
T Consensus 346 atn~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~~~~~l~~la~~t~g~~g~dl~---~l~~ea~~~a 422 (806)
T 1ypw_A 346 ATNRPNSIDPALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLADDVDLEQVANETHGHVGADLA---ALCSEAALQA 422 (806)
T ss_dssp ECSCTTTSCTTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCCTTCCTHHHHHSCSSCCHHHHH---HHHHHHHHHH
T ss_pred ccCCchhcCHHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCcccchhHHHHHhhcCcchHHHH---HHHHHHHHHH
Confidence 99999999999999999999888 699999999999887653 44556777777777777765 5555555444
Q ss_pred HH
Q 011983 356 VR 357 (473)
Q Consensus 356 v~ 357 (473)
++
T Consensus 423 ~r 424 (806)
T 1ypw_A 423 IR 424 (806)
T ss_dssp HH
T ss_pred Hh
Confidence 44
No 31
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.81 E-value=3.4e-22 Score=210.92 Aligned_cols=154 Identities=8% Similarity=0.039 Sum_probs=109.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC--CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG--INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
+..+|+++|||||||||||++|+++|++++ .+|+.++++++.++++|+++. +++.|+.|.. .+..+||||||||+|
T Consensus 59 ~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~f~~a~~-~~~~~~~il~iDEid 136 (456)
T 2c9o_A 59 KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIKKTEV-LMENFRRAIG-LRIKETKEVYEGEVT 136 (456)
T ss_dssp TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSCHHHH-HHHHHHHTEE-EEEEEEEEEEEEEEE
T ss_pred CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhhhhHH-HHHHHHHHHh-hhhcCCcEEEEechh
Confidence 446789999999999999999999999999 999999999999999999988 8999998821 117789999999999
Q ss_pred CccccCCCCCccchhhHH-------------------HHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc
Q 011983 231 AGAGRMGGTTQYTVNNQM-------------------VNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA 291 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~-------------------v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~ 291 (473)
++++.+...... ..... ....+..+.. .+. .....++|++|||+++.+|+
T Consensus 137 ~l~~~r~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~-------~~~---~~~~~v~i~attn~~~~ld~ 205 (456)
T 2c9o_A 137 ELTPCETENPMG-GYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQK-------ERV---EAGDVIYIEANSGAVKRQGR 205 (456)
T ss_dssp EEEEC---------------CEEEEEEETTEEEEEEECHHHHHHHHH-------TTC---CTTEEEEEETTTCCEEEEEE
T ss_pred hcccccCCCCCC-CcchHHHHHHHHHhccccchhHhhhHHHHHHHhh-------ccC---CCCCEEEEEcCCCCcccCCh
Confidence 999876532110 00000 0111111111 011 22334555689999999999
Q ss_pred ccccCCCceE----EEecCC--HHHHHHHHHhhc
Q 011983 292 PLIRDGRMEK----FYWAPT--REDRIGVCSGIF 319 (473)
Q Consensus 292 aLlR~GRfd~----~i~~P~--~eeR~~Il~~~l 319 (473)
+++|+||||+ .+..|+ .++|.+|++.+.
T Consensus 206 a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~ 239 (456)
T 2c9o_A 206 CDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT 239 (456)
T ss_dssp ETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE
T ss_pred hhcCCcccCcceeEecCCCchhHHHHHHHHHHHH
Confidence 9999999999 333564 467888877554
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.78 E-value=5.2e-18 Score=168.00 Aligned_cols=156 Identities=13% Similarity=0.116 Sum_probs=120.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC-------CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG-------INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg-------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 225 (473)
..+++..+|||||||||||++|+++|+.++ .+++.++++++.+.+.|.....++.+|..+. ++|||
T Consensus 63 ~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~-------~~vl~ 135 (309)
T 3syl_A 63 HETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAM-------GGVLF 135 (309)
T ss_dssp SSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGTCCSSTTCHHHHHHHHHHHHT-------TSEEE
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHhhhhcccccHHHHHHHHHhcC-------CCEEE
Confidence 345677899999999999999999999973 3899999999999999999998888888663 78999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCce
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 300 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRfd 300 (473)
|||+|.++..+.+ ......+...|+++++ ....++.||+|||... .++|+|++ ||+
T Consensus 136 iDEid~l~~~~~~----~~~~~~~~~~Ll~~l~-------------~~~~~~~~i~~~~~~~~~~~~~~~~~l~~--R~~ 196 (309)
T 3syl_A 136 IDEAYYLYRPDNE----RDYGQEAIEILLQVME-------------NNRDDLVVILAGYADRMENFFQSNPGFRS--RIA 196 (309)
T ss_dssp EETGGGSCCCC-------CCTHHHHHHHHHHHH-------------HCTTTCEEEEEECHHHHHHHHHHSTTHHH--HEE
T ss_pred EEChhhhccCCCc----ccccHHHHHHHHHHHh-------------cCCCCEEEEEeCChHHHHHHHhhCHHHHH--hCC
Confidence 9999999865432 1123455566777666 3356788999998654 35799999 998
Q ss_pred EEEe--cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHh
Q 011983 301 KFYW--APTREDRIGVCSGIFRTD--NVPKEDIVKLVD 334 (473)
Q Consensus 301 ~~i~--~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~ 334 (473)
..+. .|+.+++.+|++.++... .++.+.+..+..
T Consensus 197 ~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~ 234 (309)
T 3syl_A 197 HHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRA 234 (309)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHH
T ss_pred eEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 8777 489999999999888754 355555555444
No 33
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.77 E-value=8.8e-19 Score=171.44 Aligned_cols=165 Identities=11% Similarity=0.151 Sum_probs=118.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChH----HHHHHHHHHHHHHHHcCCceEEEec
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA----KLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~----~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
.+..++.++|||||||||||++|+++|++++.+|+.+++++ .+.|... ..++.+|..+. ...++|||||
T Consensus 59 ~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~---~~~g~~~~~~~~~~~~~~~~~~----~~~~~vl~iD 131 (272)
T 1d2n_A 59 SDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPD---KMIGFSETAKCQAMKKIFDDAY----KSQLSCVVVD 131 (272)
T ss_dssp CSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGG---GCTTCCHHHHHHHHHHHHHHHH----TSSEEEEEEC
T ss_pred cCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHH---HhcCCchHHHHHHHHHHHHHHH----hcCCcEEEEE
Confidence 34577899999999999999999999999999999998775 3344433 56677777765 7889999999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcc-ccccCCCceEEEecC
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYA-PLIRDGRMEKFYWAP 306 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~-aLlR~GRfd~~i~~P 306 (473)
|+|.+++.+..... ....+.+.|..+++ .......+++||+|||.++.|++ .+++ ||+..+.+|
T Consensus 132 Eid~l~~~~~~~~~---~~~~~l~~L~~~~~----------~~~~~~~~~~ii~ttn~~~~l~~~~l~~--rf~~~i~~p 196 (272)
T 1d2n_A 132 DIERLLDYVPIGPR---FSNLVLQALLVLLK----------KAPPQGRKLLIIGTTSRKDVLQEMEMLN--AFSTTIHVP 196 (272)
T ss_dssp CHHHHTTCBTTTTB---CCHHHHHHHHHHTT----------CCCSTTCEEEEEEEESCHHHHHHTTCTT--TSSEEEECC
T ss_pred ChhhhhccCCCChh---HHHHHHHHHHHHhc----------CccCCCCCEEEEEecCChhhcchhhhhc--ccceEEcCC
Confidence 99999766432111 12345566666555 11123567889999999999988 5666 999999988
Q ss_pred CHHHHHHHHHhhcCCCCCCHHHHHHHHhcCCC
Q 011983 307 TREDRIGVCSGIFRTDNVPKEDIVKLVDTFPG 338 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~~~v~~~~l~~l~~~~sg 338 (473)
...+|.+|...+.....++.+.+..++....|
T Consensus 197 ~l~~r~~i~~i~~~~~~~~~~~~~~l~~~~~g 228 (272)
T 1d2n_A 197 NIATGEQLLEALELLGNFKDKERTTIAQQVKG 228 (272)
T ss_dssp CEEEHHHHHHHHHHHTCSCHHHHHHHHHHHTT
T ss_pred CccHHHHHHHHHHhcCCCCHHHHHHHHHHhcC
Confidence 77666666655444445666666666555433
No 34
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.75 E-value=8.7e-18 Score=181.21 Aligned_cols=189 Identities=17% Similarity=0.280 Sum_probs=121.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc---------CCCCChHHHHHHHHHHHHHHHHcCCceEEEe
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES---------GNAGEPAKLIRQRYREAADIIKKGKMCCLFI 226 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s---------~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfI 226 (473)
++.++||+||||||||++|++||+.++.+++.++++.+.. .|+|.....+.+.|..|. ...| ||||
T Consensus 107 ~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ig~~~~~~~~~~~~a~----~~~~-vl~l 181 (543)
T 3m6a_A 107 KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTYVGAMPGRIIQGMKKAG----KLNP-VFLL 181 (543)
T ss_dssp CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------------CHHHHHHTTC----SSSE-EEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHHhccCchHHHHHHHHhh----ccCC-EEEE
Confidence 5678999999999999999999999999999998876543 566766666777777663 3444 9999
Q ss_pred cCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccC--CCCCceEEEecCCCCCCccccccCCCceEEEe
Q 011983 227 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQE--ENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW 304 (473)
Q Consensus 227 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~--~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~ 304 (473)
||+|.+...+.+. ....|++++++.+...+...+... ...+++||+|||+++.|+++|++ ||+.+.+
T Consensus 182 DEid~l~~~~~~~---------~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~iI~ttN~~~~l~~aL~~--R~~vi~~ 250 (543)
T 3m6a_A 182 DEIDKMSSDFRGD---------PSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLFIATANNLATIPGPLRD--RMEIINI 250 (543)
T ss_dssp EESSSCC------------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEEEEECSSTTTSCHHHHH--HEEEEEC
T ss_pred hhhhhhhhhhccC---------HHHHHHHHHhhhhcceeecccCCeeecccceEEEeccCccccCCHHHHh--hcceeee
Confidence 9999997654321 335677777754444333222211 23789999999999999999999 9975433
Q ss_pred -cCCHHHHHHHHHhhcCC------------CCCCHHHHHHHHhcCCCC-chhhHHHHHHHhhHHHHHHHH
Q 011983 305 -APTREDRIGVCSGIFRT------------DNVPKEDIVKLVDTFPGQ-SIDFFGALRARVYDDEVRKWI 360 (473)
Q Consensus 305 -~P~~eeR~~Il~~~l~~------------~~v~~~~l~~l~~~~sga-~l~f~gal~~~~~~~av~~~i 360 (473)
.|+.+++.+|++.++.. -.++.+.+..++..|++. .+.-......+++..+..+.+
T Consensus 251 ~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~~~i~~~~~~aa~~~~ 320 (543)
T 3m6a_A 251 AGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLERQLAAICRKAAKAIV 320 (543)
T ss_dssp CCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHHHHHHHHHHHHHHHHH
Confidence 59999999999987621 234677888888777642 222121334444444444444
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.68 E-value=1.9e-16 Score=155.90 Aligned_cols=157 Identities=18% Similarity=0.163 Sum_probs=112.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHH-cCCceEEEecCCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIK-KGKMCCLFINDLDA 231 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiDa 231 (473)
..|.++|||||||||||++|+++|+.++.+++.++++.+.. +|+|. ....++.++..+...++ ...++||||||+|.
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~ 127 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDK 127 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGGSTTHHHHHHHHTTTTCHHHHHHHCEEEEECGGG
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCccHHHHHHHHHHHhhHHHhhccCCCEEEEEChhh
Confidence 45789999999999999999999999999999999998876 56664 34556666664311111 23489999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEe----cCCCCCCccccccCCCceEEEe--c
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT----GNDFSTLYAPLIRDGRMEKFYW--A 305 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaT----TN~~~~Ld~aLlR~GRfd~~i~--~ 305 (473)
+...... .........+...|+.++++.+.....+. ....++.||++ ++.+..++++|++ ||+..+. .
T Consensus 128 l~~~~~~-~~~~~~~~~~~~~Ll~~le~~~~~~~~~~---~~~~~~~~i~~~~~~~~~~~~l~~~l~~--R~~~~i~~~~ 201 (310)
T 1ofh_A 128 ICKKGEY-SGADVSREGVQRDLLPLVEGSTVSTKHGM---VKTDHILFIASGAFQVARPSDLIPELQG--RLPIRVELTA 201 (310)
T ss_dssp GSCCSSC-CSSHHHHHHHHHHHHHHHHCCEEEETTEE---EECTTCEEEEEECCSSSCGGGSCHHHHH--TCCEEEECCC
T ss_pred cCccccc-cccchhHHHHHHHHHHHhcCCeEeccccc---ccCCcEEEEEcCCcccCCcccCCHHHHh--hCCceEEcCC
Confidence 9876432 12233344556777777773221111111 23467888888 5688899999999 9997677 4
Q ss_pred CCHHHHHHHHHh
Q 011983 306 PTREDRIGVCSG 317 (473)
Q Consensus 306 P~~eeR~~Il~~ 317 (473)
|+.+++.+|++.
T Consensus 202 ~~~~~~~~il~~ 213 (310)
T 1ofh_A 202 LSAADFERILTE 213 (310)
T ss_dssp CCHHHHHHHHHS
T ss_pred cCHHHHHHHHHh
Confidence 899999999984
No 36
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.66 E-value=4.1e-17 Score=171.46 Aligned_cols=135 Identities=12% Similarity=0.068 Sum_probs=60.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc-CCCCC-hHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES-GNAGE-PAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s-~~~Ge-~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.+|+++||+||||||||++|+++|+.++.+|+.++++.+.+ +|+|+ .+..++.+|..|..+ +++||+|.+
T Consensus 48 ~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~d~e~~lr~lf~~a~~~--------~~~De~d~~ 119 (444)
T 1g41_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDLTDSAMKL--------VRQQEIAKN 119 (444)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCCCTHHHHHHHHHHHHHH--------HHHHHHHSC
T ss_pred cCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeeccHHHHHHHHHHHHHhc--------chhhhhhhh
Confidence 36789999999999999999999999999999999999888 69995 899999999998733 358998877
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEe-cCCCCCCccccccCCCceEEEe--cCCHH
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT-GNDFSTLYAPLIRDGRMEKFYW--APTRE 309 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaT-TN~~~~Ld~aLlR~GRfd~~i~--~P~~e 309 (473)
.... ...... ++...|+. +|||+ .....+ +++ ||+++.||++|+|+||||+.|+ +|+..
T Consensus 120 ~~~~----~~~~e~-rvl~~LL~--------~~dg~---~~~~~v--~a~~TN~~~~ld~aL~rggr~D~~i~i~lP~~~ 181 (444)
T 1g41_A 120 RARA----EDVAEE-RILDALLP--------PAKNQ---WGEVEN--HDSHSSTRQAFRKKLREGQLDDKEIEIDVSAGV 181 (444)
T ss_dssp C-------------------------------------------------------------------------------
T ss_pred hccc----hhhHHH-HHHHHHHH--------Hhhcc---cccccc--ccccccCHHHHHHHHHcCCCcceEEEEcCCCCc
Confidence 5432 222233 44444544 45555 222333 555 9999999999999999999999 58776
Q ss_pred -HHHHHH
Q 011983 310 -DRIGVC 315 (473)
Q Consensus 310 -eR~~Il 315 (473)
.|.+|+
T Consensus 182 ~~~~ei~ 188 (444)
T 1g41_A 182 SMGVEIM 188 (444)
T ss_dssp -------
T ss_pred cchhhhh
Confidence 677775
No 37
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.63 E-value=1e-16 Score=163.47 Aligned_cols=160 Identities=18% Similarity=0.251 Sum_probs=111.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccC-CCCCh-HHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-NAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~-~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.++.++||+||||||||++|++||+.++.+|+.++++++... |+|.. ...++.+|+.+...+....++||||||+|++
T Consensus 49 ~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l 128 (363)
T 3hws_A 49 LGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGEDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKI 128 (363)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHHHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhh
Confidence 367899999999999999999999999999999999988744 67765 5667777776522223456899999999999
Q ss_pred cccCCCCC-ccchhhHHHHHHHHHhhcCCCcccCC---CC------cccCCCCCceEEEecCCC----------CC----
Q 011983 233 AGRMGGTT-QYTVNNQMVNATLMNIADNPTNVQLP---GM------YNQEENPRVPIIVTGNDF----------ST---- 288 (473)
Q Consensus 233 ~~~r~~~~-~~~~~~~~v~~~Ll~lld~~~~v~l~---g~------~~~~~~~~V~VIaTTN~~----------~~---- 288 (473)
...+.+.. ......+.+...|+++++ ...+.+. |. ...-...++++|+|+|.. ..
T Consensus 129 ~~~~~~~~~~~~~~~~~~~~~Ll~~le-g~~~~~~~~~~~~~~~~~~~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~ 207 (363)
T 3hws_A 129 SRKSDNPSITRDVSGEGVQQALLKLIE-GTVAAVPPQGGRKHPQQEFLQVDTSKILFICGGAFAGLDKVISHRVETGSGI 207 (363)
T ss_dssp CCCSSCC---CHHHHHHHHHHHHHHHH-CC----------------CCCCCTTSSEEEEEECCTTHHHHHHHHHCCCC--
T ss_pred cccccccccccccchHHHHHHHHHHhc-CceeeccCccccccCCCceEEEECCCceEEecCCcHHHHHHHHHhhhccccC
Confidence 87654321 223334557788888887 3322221 10 001234566677776642 11
Q ss_pred -------------------------------CccccccCCCceEEEe--cCCHHHHHHHHHh
Q 011983 289 -------------------------------LYAPLIRDGRMEKFYW--APTREDRIGVCSG 317 (473)
Q Consensus 289 -------------------------------Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~ 317 (473)
+.|+|+. ||+.++. .|+.+++.+|+..
T Consensus 208 gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~--R~~~~~~~~pl~~~~~~~I~~~ 267 (363)
T 3hws_A 208 GFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIG--RLPVVATLNELSEEALIQILKE 267 (363)
T ss_dssp ----------CCSCHHHHHHTCCHHHHHHHTCCHHHHT--TCCEEEECCCCCHHHHHHHHHS
T ss_pred CccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhc--ccCeeeecCCCCHHHHHHHHHH
Confidence 6788888 9999987 4899999999876
No 38
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.63 E-value=1.8e-16 Score=143.37 Aligned_cols=136 Identities=20% Similarity=0.211 Sum_probs=96.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+..++|+||||||||++++++++++ +.+++.++++.+. ..+.|.....++.++..+. +...++
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMGALVAGAKYRGEFEERLKGVLNDLA---KQEGNV 117 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHH---HSTTTE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHHHHhccCCccccHHHHHHHHHHHHh---hcCCCe
Confidence 446789999999999999999999996 7788888887765 2344555556666666443 356789
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 297 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~G 297 (473)
||||||+|.+...+...... .+...|..+++ ..++.+|++||.+. .+++++++
T Consensus 118 vl~iDe~~~l~~~~~~~~~~-----~~~~~l~~~~~---------------~~~~~~i~~~~~~~~~~~~~~~~~l~~-- 175 (195)
T 1jbk_A 118 ILFIDELHTMVGAGKADGAM-----DAGNMLKPALA---------------RGELHCVGATTLDEYRQYIEKDAALER-- 175 (195)
T ss_dssp EEEEETGGGGTT------CC-----CCHHHHHHHHH---------------TTSCCEEEEECHHHHHHHTTTCHHHHT--
T ss_pred EEEEeCHHHHhccCcccchH-----HHHHHHHHhhc---------------cCCeEEEEeCCHHHHHHHHhcCHHHHH--
Confidence 99999999997553211111 12233444343 35678999999876 78999999
Q ss_pred CceEEEe-cCCHHHHHHHH
Q 011983 298 RMEKFYW-APTREDRIGVC 315 (473)
Q Consensus 298 Rfd~~i~-~P~~eeR~~Il 315 (473)
||+.+.. .|+.++|.+|+
T Consensus 176 r~~~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 176 RFQKVFVAEPSVEDTIAIL 194 (195)
T ss_dssp TEEEEECCCCCHHHHHTTC
T ss_pred HhceeecCCCCHHHHHHHh
Confidence 9985333 69999998876
No 39
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.61 E-value=4.1e-15 Score=150.71 Aligned_cols=153 Identities=15% Similarity=0.087 Sum_probs=103.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecccccccCCC----------------------------------
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGELESGNA---------------------------------- 198 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s~l~s~~~---------------------------------- 198 (473)
.++.++|||||||||||++|+++|+.++. +++.+++..+.+.+.
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~ 147 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVI 147 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSCHHHHHHHHHHHSBEECC------CEEHHHHHHH
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccchhHHHHHHHHHHHHHHhhhhccccccHhhhhhh
Confidence 45689999999999999999999999875 777787766444333
Q ss_pred ---------------CChHHHHHHHHHHHHHHHH-cC----CceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhc
Q 011983 199 ---------------GEPAKLIRQRYREAADIIK-KG----KMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIAD 258 (473)
Q Consensus 199 ---------------Ge~~~~ir~~f~~A~~~~~-~~----~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld 258 (473)
|+....++..+..+..... .. .|+||||||+|.+.. .....|+.+++
T Consensus 148 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~IDEi~~l~~-------------~~~~~L~~~le 214 (368)
T 3uk6_A 148 NSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLFIDEVHMLDI-------------ESFSFLNRALE 214 (368)
T ss_dssp TC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEEEESGGGSBH-------------HHHHHHHHHTT
T ss_pred hcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEEEhhccccCh-------------HHHHHHHHHhh
Confidence 3334456666666553322 22 378999999997742 23345666555
Q ss_pred CCCcccCCCCcccCCCCCceEEEec-----------CCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CCC
Q 011983 259 NPTNVQLPGMYNQEENPRVPIIVTG-----------NDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNV 324 (473)
Q Consensus 259 ~~~~v~l~g~~~~~~~~~V~VIaTT-----------N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~v 324 (473)
.....+++++|. |.+..++++|++ ||..+.+ .|+.+++.+|++..+.. ..+
T Consensus 215 -------------~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~s--R~~~i~~~~~~~~e~~~il~~~~~~~~~~~ 279 (368)
T 3uk6_A 215 -------------SDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLD--RLLIVSTTPYSEKDTKQILRIRCEEEDVEM 279 (368)
T ss_dssp -------------CTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHT--TEEEEEECCCCHHHHHHHHHHHHHHTTCCB
T ss_pred -------------CcCCCeeeeecccceeeeeccCCCCcccCCHHHHh--hccEEEecCCCHHHHHHHHHHHHHHcCCCC
Confidence 223334444443 357889999999 9987544 58999999999987754 345
Q ss_pred CHHHHHHHHhc
Q 011983 325 PKEDIVKLVDT 335 (473)
Q Consensus 325 ~~~~l~~l~~~ 335 (473)
+.+.+..++..
T Consensus 280 ~~~~l~~l~~~ 290 (368)
T 3uk6_A 280 SEDAYTVLTRI 290 (368)
T ss_dssp CHHHHHHHHHH
T ss_pred CHHHHHHHHHH
Confidence 66655555544
No 40
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.59 E-value=2e-14 Score=144.23 Aligned_cols=158 Identities=13% Similarity=0.078 Sum_probs=111.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.++..+||+||||||||++|+++|+.++.+|+.++++.+. ....+...+. ....+++|||||||.+..
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~------~~~~~~~~~~------~~~~~~vl~lDEi~~l~~ 120 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIE------KSGDLAAILT------NLSEGDILFIDEIHRLSP 120 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCC------SHHHHHHHHH------TCCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhcc------chhHHHHHHH------hccCCCEEEEechhhcCH
Confidence 4567899999999999999999999999999999987653 1233333333 145789999999998742
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCC-----cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGM-----YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~-----~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
.+...|+..+++.....+.+. ......+++.+|+|||+...++++|++ ||+..+. .|+
T Consensus 121 -------------~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~atn~~~~l~~~L~~--R~~~~i~l~~~~ 185 (338)
T 3pfi_A 121 -------------AIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGATTRAGMLSNPLRD--RFGMQFRLEFYK 185 (338)
T ss_dssp -------------HHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred -------------HHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeCCCccccCHHHHh--hcCEEeeCCCcC
Confidence 233445555553221111110 000122368999999999999999999 9988777 489
Q ss_pred HHHHHHHHHhhcCCCC--CCHHHHHHHHhcCCCC
Q 011983 308 REDRIGVCSGIFRTDN--VPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~sga 339 (473)
.+++..|++.++...+ ++.+.+..+...++|.
T Consensus 186 ~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G~ 219 (338)
T 3pfi_A 186 DSELALILQKAALKLNKTCEEKAALEIAKRSRST 219 (338)
T ss_dssp HHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTTC
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcC
Confidence 9999999998876543 5667777777755443
No 41
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.59 E-value=1.7e-14 Score=142.61 Aligned_cols=206 Identities=13% Similarity=0.100 Sum_probs=125.7
Q ss_pred ChhhHHHHHHHHHHhhhcCCCC-CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC------------
Q 011983 133 APAFMDKVVVHITKNFLNLPNV-KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG------------ 196 (473)
Q Consensus 133 ~~~~~d~~~~~i~k~~l~~~~~-~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~------------ 196 (473)
....+..+...+.+........ +++..+||+||||||||++|+++|+.+ +.+++.++++.+...
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~ 101 (311)
T 4fcw_A 22 QDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPG 101 (311)
T ss_dssp CHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHHHHHCCCTT
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHHHhcCCCCc
Confidence 3444444444444333222222 334579999999999999999999997 456888888765432
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCC
Q 011983 197 NAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPR 276 (473)
Q Consensus 197 ~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~ 276 (473)
+.|.... ..+..+. ....++||||||+|.+.. .+...|+.++++.....-.+. .....+
T Consensus 102 ~~~~~~~---~~~~~~~---~~~~~~vl~lDEi~~l~~-------------~~~~~Ll~~le~~~~~~~~~~--~~~~~~ 160 (311)
T 4fcw_A 102 YVGYEEG---GQLTEAV---RRRPYSVILFDAIEKAHP-------------DVFNILLQMLDDGRLTDSHGR--TVDFRN 160 (311)
T ss_dssp STTTTTC---CHHHHHH---HHCSSEEEEEETGGGSCH-------------HHHHHHHHHHHHSEEECTTSC--EEECTT
T ss_pred ccccccc---chHHHHH---HhCCCeEEEEeChhhcCH-------------HHHHHHHHHHhcCEEEcCCCC--EEECCC
Confidence 1111110 1122221 245579999999997732 344566666663322211111 122357
Q ss_pred ceEEEecCC--------------------------CCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-------
Q 011983 277 VPIIVTGND--------------------------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT------- 321 (473)
Q Consensus 277 V~VIaTTN~--------------------------~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~------- 321 (473)
++||+|||. ...++++|++ ||+..+. .|+.+++..|++.++..
T Consensus 161 ~iiI~ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~--R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~ 238 (311)
T 4fcw_A 161 TVIIMTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE 238 (311)
T ss_dssp EEEEEEESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT
T ss_pred cEEEEecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHh--cCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh
Confidence 789999999 5578899998 9988777 48899999999977643
Q ss_pred ----CCCCHHHHHHHHh-cC--CCCchhhHHHHHHHhhHHHHHHHHHH
Q 011983 322 ----DNVPKEDIVKLVD-TF--PGQSIDFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 322 ----~~v~~~~l~~l~~-~~--sga~l~f~gal~~~~~~~av~~~i~~ 362 (473)
..++.+.+..+.. .| +|..-+ ...++.+++..++.+.+..
T Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~gn~R~-L~~~i~~~~~~~~~~~i~~ 285 (311)
T 4fcw_A 239 KRISLELTEAAKDFLAERGYDPVFGARP-LRRVIQRELETPLAQKILA 285 (311)
T ss_dssp TTCEEEECHHHHHHHHHHSCBTTTBTTT-HHHHHHHHTHHHHHHHHHH
T ss_pred CCcEEEeCHHHHHHHHHhCCCccCCchh-HHHHHHHHHHHHHHHHHHh
Confidence 2356667777766 44 232212 2255566666555555544
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.57 E-value=1.1e-14 Score=145.62 Aligned_cols=148 Identities=18% Similarity=0.320 Sum_probs=103.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-cCCceEEEecCCCCcc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-KGKMCCLFINDLDAGA 233 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-~~~p~ILfIDEiDal~ 233 (473)
+.|..+|++||||||||++|+++|++++.+++.++++... ...++..+..+..... ...+.||||||+|.+.
T Consensus 46 ~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~-------~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~ 118 (324)
T 3u61_B 46 KIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK-------IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSG 118 (324)
T ss_dssp CCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-------HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGG
T ss_pred CCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-------HHHHHHHHHHHHhhcccCCCCeEEEEECCcccC
Confidence 6678899999999999999999999999999999977532 4555655554331111 2368999999999885
Q ss_pred ccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHH
Q 011983 234 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRI 312 (473)
Q Consensus 234 ~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~ 312 (473)
+. .....|+.+++ ....++.+|+|||++..++++|++ ||..+.+ .|+.++|.
T Consensus 119 ~~------------~~~~~L~~~le-------------~~~~~~~iI~~~n~~~~l~~~l~s--R~~~i~~~~~~~~e~~ 171 (324)
T 3u61_B 119 LA------------ESQRHLRSFME-------------AYSSNCSIIITANNIDGIIKPLQS--RCRVITFGQPTDEDKI 171 (324)
T ss_dssp GH------------HHHHHHHHHHH-------------HHGGGCEEEEEESSGGGSCTTHHH--HSEEEECCCCCHHHHH
T ss_pred cH------------HHHHHHHHHHH-------------hCCCCcEEEEEeCCccccCHHHHh--hCcEEEeCCCCHHHHH
Confidence 21 12345555554 224678899999999999999999 8865333 58999987
Q ss_pred HHHHhhc-------CCC--CCCH-HHHHHHHhcC
Q 011983 313 GVCSGIF-------RTD--NVPK-EDIVKLVDTF 336 (473)
Q Consensus 313 ~Il~~~l-------~~~--~v~~-~~l~~l~~~~ 336 (473)
+|++.++ ... .++. +.+..++...
T Consensus 172 ~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~ 205 (324)
T 3u61_B 172 EMMKQMIRRLTEICKHEGIAIADMKVVAALVKKN 205 (324)
T ss_dssp HHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhC
Confidence 7655332 222 3444 5555555553
No 43
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.56 E-value=1.2e-14 Score=146.71 Aligned_cols=137 Identities=11% Similarity=0.034 Sum_probs=96.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccccC----------------CCCChHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESG----------------NAGEPAKLIRQR 208 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~ 208 (473)
..|.+++||||||||||++++.+++++ ...++.+++..+.+. ..+.....++..
T Consensus 43 ~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~~~~I~~~L~g~~~~~~~~~~~L~~~ 122 (318)
T 3te6_A 43 SQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDALYEKIWFAISKENLCGDISLEALNFY 122 (318)
T ss_dssp TCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHHHHHHHHHHSCCC--CCCCHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHHHHHHHHHhcCCCCCchHHHHHHHHH
Confidence 578899999999999999999999998 356788887654332 124455667777
Q ss_pred HHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC
Q 011983 209 YREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST 288 (473)
Q Consensus 209 f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~ 288 (473)
|.... -....++||||||+|.+. . + . .|..+++ |......++.||+++|..+.
T Consensus 123 f~~~~--~~~~~~~ii~lDE~d~l~-~-----q------~---~L~~l~~----------~~~~~~s~~~vI~i~n~~d~ 175 (318)
T 3te6_A 123 ITNVP--KAKKRKTLILIQNPENLL-S-----E------K---ILQYFEK----------WISSKNSKLSIICVGGHNVT 175 (318)
T ss_dssp HHHSC--GGGSCEEEEEEECCSSSC-C-----T------H---HHHHHHH----------HHHCSSCCEEEEEECCSSCC
T ss_pred HHHhh--hccCCceEEEEecHHHhh-c-----c------h---HHHHHHh----------cccccCCcEEEEEEecCccc
Confidence 77531 015678999999999987 1 1 2 2333333 33355678999999999875
Q ss_pred ----CccccccCCCceE-EEe--cCCHHHHHHHHHhhcC
Q 011983 289 ----LYAPLIRDGRMEK-FYW--APTREDRIGVCSGIFR 320 (473)
Q Consensus 289 ----Ld~aLlR~GRfd~-~i~--~P~~eeR~~Il~~~l~ 320 (473)
|++++++ ||.. .|. .++.++..+|++..+.
T Consensus 176 ~~~~L~~~v~S--R~~~~~i~F~pYt~~el~~Il~~Rl~ 212 (318)
T 3te6_A 176 IREQINIMPSL--KAHFTEIKLNKVDKNELQQMIITRLK 212 (318)
T ss_dssp CHHHHHTCHHH--HTTEEEEECCCCCHHHHHHHHHHHHH
T ss_pred chhhcchhhhc--cCCceEEEeCCCCHHHHHHHHHHHHH
Confidence 4555667 7863 444 4799999999985553
No 44
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.56 E-value=1.8e-14 Score=152.58 Aligned_cols=143 Identities=17% Similarity=0.190 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILf 225 (473)
.+.++||+||||||||++|+++|+.+ +.+++.++++ ..|.|+.+..++.+|..+. ...|+|||
T Consensus 200 ~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~---~~~~g~~e~~~~~~~~~~~----~~~~~iLf 272 (468)
T 3pxg_A 200 TKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDMG---TKYRGEFEDRLKKVMDEIR----QAGNIILF 272 (468)
T ss_dssp SSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEEE
T ss_pred CCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeCC---ccccchHHHHHHHHHHHHH----hcCCeEEE
Confidence 34578999999999999999999996 7888888887 6788888888899999886 77899999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCce
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRME 300 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRfd 300 (473)
|| +. . ...+.|+..+. ...+.+|+|||... .+|++|+| ||.
T Consensus 273 iD------~~-----~------~a~~~L~~~L~---------------~g~v~vI~at~~~e~~~~~~~~~al~~--Rf~ 318 (468)
T 3pxg_A 273 ID------AA-----I------DASNILKPSLA---------------RGELQCIGATTLDEYRKYIEKDAALER--RFQ 318 (468)
T ss_dssp EC------C-------------------CCCTT---------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SEE
T ss_pred Ee------Cc-----h------hHHHHHHHhhc---------------CCCEEEEecCCHHHHHHHhhcCHHHHH--hCc
Confidence 99 11 1 11233333222 45789999999987 69999999 998
Q ss_pred EEEe-cCCHHHHHHHHHhhcCC----C--CCCHH---HHHHHHhcCCCC
Q 011983 301 KFYW-APTREDRIGVCSGIFRT----D--NVPKE---DIVKLVDTFPGQ 339 (473)
Q Consensus 301 ~~i~-~P~~eeR~~Il~~~l~~----~--~v~~~---~l~~l~~~~sga 339 (473)
.+.. .|+.+++..|++.++.. . .++.+ .+..++.+|...
T Consensus 319 ~i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~ 367 (468)
T 3pxg_A 319 PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISD 367 (468)
T ss_dssp EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCC
T ss_pred cceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhcc
Confidence 6444 69999999999987754 2 34444 444555665543
No 45
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.56 E-value=3e-14 Score=150.20 Aligned_cols=144 Identities=19% Similarity=0.242 Sum_probs=106.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 237 (473)
..+|||||||||||++|++|++.++.+|+.+++.. .....++.++..+........+.||||||||.+....
T Consensus 51 ~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~-------~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~~- 122 (447)
T 3pvs_A 51 HSMILWGPPGTGKTTLAEVIARYANADVERISAVT-------SGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQ- 122 (447)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTT-------CCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC-----
T ss_pred cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEecc-------CCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHHH-
Confidence 68999999999999999999999999999988653 2356788888888765556789999999999885321
Q ss_pred CCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec--CCCCCCccccccCCCceEEEe-cCCHHHHHHH
Q 011983 238 GTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG--NDFSTLYAPLIRDGRMEKFYW-APTREDRIGV 314 (473)
Q Consensus 238 ~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT--N~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~I 314 (473)
+ ..|+..++ ...+.+|++| |....++++|++ |+..+.. .|+.+++..|
T Consensus 123 ---q---------~~LL~~le---------------~~~v~lI~att~n~~~~l~~aL~s--R~~v~~l~~l~~edi~~i 173 (447)
T 3pvs_A 123 ---Q---------DAFLPHIE---------------DGTITFIGATTENPSFELNSALLS--RARVYLLKSLSTEDIEQV 173 (447)
T ss_dssp --------------CCHHHHH---------------TTSCEEEEEESSCGGGSSCHHHHT--TEEEEECCCCCHHHHHHH
T ss_pred ---H---------HHHHHHHh---------------cCceEEEecCCCCcccccCHHHhC--ceeEEeeCCcCHHHHHHH
Confidence 1 23445444 2456777755 555689999999 8875554 5899999999
Q ss_pred HHhhcCC---------CCCCHHHHHHHHhcCCC
Q 011983 315 CSGIFRT---------DNVPKEDIVKLVDTFPG 338 (473)
Q Consensus 315 l~~~l~~---------~~v~~~~l~~l~~~~sg 338 (473)
++.++.. ..++.+.+..++....|
T Consensus 174 l~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G 206 (447)
T 3pvs_A 174 LTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG 206 (447)
T ss_dssp HHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS
T ss_pred HHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC
Confidence 9988764 23666666666665433
No 46
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.54 E-value=2.4e-14 Score=146.53 Aligned_cols=105 Identities=17% Similarity=0.269 Sum_probs=66.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc-cCCCCCh-HHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE-SGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~-s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.++..+|||||||||||++|+++|+.++.+|+.++++.+. .++.|.. ...+...+..+...+....++||||||+|.+
T Consensus 70 ~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l 149 (376)
T 1um8_A 70 LSKSNILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKI 149 (376)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC
T ss_pred cCCCCEEEECCCCCCHHHHHHHHHHHhCCCEEEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHH
Confidence 4567899999999999999999999999999999998875 4566654 4455556554322222456899999999999
Q ss_pred cccCCCCC-ccchhhHHHHHHHHHhhcC
Q 011983 233 AGRMGGTT-QYTVNNQMVNATLMNIADN 259 (473)
Q Consensus 233 ~~~r~~~~-~~~~~~~~v~~~Ll~lld~ 259 (473)
...+.+.. ..+.....+...|+.+++.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~Ll~~le~ 177 (376)
T 1um8_A 150 SRLSENRSITRDVSGEGVQQALLKIVEG 177 (376)
T ss_dssp --------------CHHHHHHHHHHHHC
T ss_pred hhhcCCCceecccchHHHHHHHHHHhhc
Confidence 76643211 1122233467788888873
No 47
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.54 E-value=9.2e-15 Score=132.19 Aligned_cols=125 Identities=14% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+..+||+||||||||++|+++++++ +.+++.+++..+. ..+.|.....++.++..+. +...|+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~ 117 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLSSLIAGAKYRGDFEERLKSILKEVQ---DAEGQV 117 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHHHHHHHCCSHHHHHHHHHHHHHHHH---HTTTSE
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHHHhhcCCCchhHHHHHHHHHHHHHH---hcCCce
Confidence 346789999999999999999999997 7778888776654 2344445555666666553 234789
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDG 297 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~G 297 (473)
||||||+|.+.+.+... ... ..+...|..+++ ..++.+|++||.+. .++++|++
T Consensus 118 vl~iDe~~~l~~~~~~~-~~~---~~~~~~l~~~~~---------------~~~~~ii~~~~~~~~~~~~~~~~~l~~-- 176 (187)
T 2p65_A 118 VMFIDEIHTVVGAGAVA-EGA---LDAGNILKPMLA---------------RGELRCIGATTVSEYRQFIEKDKALER-- 176 (187)
T ss_dssp EEEETTGGGGSSSSSSC-TTS---CCTHHHHHHHHH---------------TTCSCEEEEECHHHHHHHTTTCHHHHH--
T ss_pred EEEEeCHHHhccccccc-ccc---hHHHHHHHHHHh---------------cCCeeEEEecCHHHHHHHHhccHHHHH--
Confidence 99999999997543311 100 122334444444 35688999999875 68999999
Q ss_pred CceEEEe
Q 011983 298 RMEKFYW 304 (473)
Q Consensus 298 Rfd~~i~ 304 (473)
||+. +.
T Consensus 177 R~~~-i~ 182 (187)
T 2p65_A 177 RFQQ-IL 182 (187)
T ss_dssp HEEE-EE
T ss_pred hcCc-cc
Confidence 9996 44
No 48
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.54 E-value=1.1e-13 Score=154.45 Aligned_cols=155 Identities=12% Similarity=0.143 Sum_probs=108.9
Q ss_pred CCCc-EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPL-ILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~-glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..|. .+||+||||||||++|+++|+.+ +.+|+.++++++...+.... .. ++... +...++||||||||
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~-~~---l~~~~----~~~~~~vl~lDEi~ 589 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSG-GQ---LTEKV----RRKPYSVVLLDAIE 589 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC-------CHHHH----HHCSSSEEEEECGG
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccccc-ch---hhHHH----HhCCCeEEEEeCcc
Confidence 3454 69999999999999999999997 68999999999988776651 11 12222 25668999999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC------------CccccccCCC
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST------------LYAPLIRDGR 298 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~------------Ld~aLlR~GR 298 (473)
.+.. .+...|++++++.+.....|. .....++.||+|||.+.. +.|+|++ |
T Consensus 590 ~~~~-------------~~~~~Ll~~le~g~~~~~~g~--~~~~~~~~iI~ttn~~~~~~~~~~~~~~~~f~p~l~~--R 652 (758)
T 3pxi_A 590 KAHP-------------DVFNILLQVLEDGRLTDSKGR--TVDFRNTILIMTSNVGASEKDKVMGELKRAFRPEFIN--R 652 (758)
T ss_dssp GSCH-------------HHHHHHHHHHHHSBCC-------CCBCTTCEEEEEESSSTTCCHHHHHHHHHHSCHHHHT--T
T ss_pred ccCH-------------HHHHHHHHHhccCeEEcCCCC--EeccCCeEEEEeCCCChhhHHHHHHHHHhhCCHHHHh--h
Confidence 7632 455677777774333322222 234578899999997654 7888988 9
Q ss_pred ceEEEec--CCHHHHHHHHHhhcCC-----------CCCCHHHHHHHHh
Q 011983 299 MEKFYWA--PTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 334 (473)
Q Consensus 299 fd~~i~~--P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~ 334 (473)
|+..+.+ |+.+++..|++.++.. ..++.+.+..++.
T Consensus 653 l~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 653 IDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAE 701 (758)
T ss_dssp SSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHG
T ss_pred CCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHH
Confidence 9887774 7899999998866542 1355666666654
No 49
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.52 E-value=5.7e-14 Score=156.53 Aligned_cols=158 Identities=16% Similarity=0.172 Sum_probs=108.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccC-----CCCChHHHH-----HHHHHHHHHHHHcCCceEEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESG-----NAGEPAKLI-----RQRYREAADIIKKGKMCCLF 225 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~-----~~Ge~~~~i-----r~~f~~A~~~~~~~~p~ILf 225 (473)
+...+||+||||||||++|+++|+.++.+|+.++++++... .+|.+..++ ..+... ++...++|||
T Consensus 487 p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~~~g~~g~~~~~~l~~~----~~~~~~~vl~ 562 (758)
T 1r6b_X 487 PVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDA----VIKHPHAVLL 562 (758)
T ss_dssp CSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCCCSCSHHHHHTTHHHHH----HHHCSSEEEE
T ss_pred CceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCCCCCCcCccccchHHHH----HHhCCCcEEE
Confidence 33479999999999999999999999999999999887542 333321111 112222 2256689999
Q ss_pred ecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC------------------
Q 011983 226 INDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS------------------ 287 (473)
Q Consensus 226 IDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~------------------ 287 (473)
|||||++.+ .+...|++++++.+...-.|. .....+++||+|||...
T Consensus 563 lDEi~~~~~-------------~~~~~Ll~~le~~~~~~~~g~--~~~~~~~~iI~tsN~~~~~~~~~~~g~~~~~~~~~ 627 (758)
T 1r6b_X 563 LDEIEKAHP-------------DVFNILLQVMDNGTLTDNNGR--KADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTD 627 (758)
T ss_dssp EETGGGSCH-------------HHHHHHHHHHHHSEEEETTTE--EEECTTEEEEEEECSSCC-----------------
T ss_pred EeCccccCH-------------HHHHHHHHHhcCcEEEcCCCC--EEecCCeEEEEecCcchhhhhhcccCccccchHHH
Confidence 999997632 355677777774322211111 12236788999999854
Q ss_pred -------CCccccccCCCceEEEec--CCHHHHHHHHHhhcCC-----------CCCCHHHHHHHHh
Q 011983 288 -------TLYAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD 334 (473)
Q Consensus 288 -------~Ld~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~ 334 (473)
.++|+|++ ||+..+.+ |+.+++..|++.++.. ..++.+.+..+..
T Consensus 628 ~~~~~~~~~~~~l~~--R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~ 692 (758)
T 1r6b_X 628 AMEEIKKIFTPEFRN--RLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAE 692 (758)
T ss_dssp CHHHHHHHSCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHh--hCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHHHHHHH
Confidence 67899998 99988774 7899999999977652 1355665655554
No 50
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.51 E-value=7.1e-14 Score=138.89 Aligned_cols=158 Identities=17% Similarity=0.145 Sum_probs=107.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..+..+||+||||||||++|++++++++.+++.++++.+.. ...+...|..+ ...+++|||||+|.+..
T Consensus 36 ~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~------~~~l~~~l~~~-----~~~~~~l~lDEi~~l~~ 104 (324)
T 1hqc_A 36 EPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK------PGDLAAILANS-----LEEGDILFIDEIHRLSR 104 (324)
T ss_dssp SCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS------HHHHHHHHTTT-----CCTTCEEEETTTTSCCH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC------hHHHHHHHHHh-----ccCCCEEEEECCccccc
Confidence 45678999999999999999999999999999988876532 23333333321 25689999999997753
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcc-----cCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYN-----QEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~-----~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
. ....|+.++++.....+.+.-. .....++.+|+|||++..++++|++ ||+..+. .|+
T Consensus 105 ~-------------~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~~~~~~~l~~--R~~~~i~l~~~~ 169 (324)
T 1hqc_A 105 Q-------------AEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRPGLITAPLLS--RFGIVEHLEYYT 169 (324)
T ss_dssp H-------------HHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCCSSCSCSTTT--TCSCEEECCCCC
T ss_pred c-------------hHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCcccCCHHHHh--cccEEEecCCCC
Confidence 2 1233444444211111111100 0012468899999999999999999 9976666 589
Q ss_pred HHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCC
Q 011983 308 REDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 338 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sg 338 (473)
.+++..+++.++... .++.+.+..+.....|
T Consensus 170 ~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G 202 (324)
T 1hqc_A 170 PEELAQGVMRDARLLGVRITEEAALEIGRRSRG 202 (324)
T ss_dssp HHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC
Confidence 999999999887643 4666777777666433
No 51
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.50 E-value=5.8e-14 Score=140.54 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=103.4
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCc
Q 011983 145 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKM 221 (473)
Q Consensus 145 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p 221 (473)
++.+...++ ..+..++||||||||||++|+++++++ +.+++.+++.++...+.+.........|... ...+
T Consensus 26 ~~~~~~~~~-~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~ 99 (324)
T 1l8q_A 26 VKEALENLG-SLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNM-----YKSV 99 (324)
T ss_dssp HHHHHHTTT-TSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHHHHHHTCHHHHHHH-----HHTC
T ss_pred HHHHHhCcC-CCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHHHHHHHcCcHHHHHHH-----hcCC
Confidence 333443343 456789999999999999999999998 8999999987764322211111111122222 2348
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC---CCccccccCCC
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS---TLYAPLIRDGR 298 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~---~Ld~aLlR~GR 298 (473)
+||||||++.+...+. ..+.+...+..+.+ ....+||+++|.+. .++++|++ |
T Consensus 100 ~vL~iDEi~~l~~~~~-------~~~~l~~~l~~~~~---------------~~~~iii~~~~~~~~l~~l~~~L~s--R 155 (324)
T 1l8q_A 100 DLLLLDDVQFLSGKER-------TQIEFFHIFNTLYL---------------LEKQIILASDRHPQKLDGVSDRLVS--R 155 (324)
T ss_dssp SEEEEECGGGGTTCHH-------HHHHHHHHHHHHHH---------------TTCEEEEEESSCGGGCTTSCHHHHH--H
T ss_pred CEEEEcCcccccCChH-------HHHHHHHHHHHHHH---------------CCCeEEEEecCChHHHHHhhhHhhh--c
Confidence 9999999998764311 11222233322222 22345555666665 68999999 8
Q ss_pred ce--EEEec-CCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcC
Q 011983 299 ME--KFYWA-PTREDRIGVCSGIFRT--DNVPKEDIVKLVDTF 336 (473)
Q Consensus 299 fd--~~i~~-P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~ 336 (473)
|. ..+.+ |+.++|.+|++.++.. ..++.+.+..++...
T Consensus 156 ~~~~~~i~l~~~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~ 198 (324)
T 1l8q_A 156 FEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENT 198 (324)
T ss_dssp HHTSEEEECCCCHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC
T ss_pred ccCceEEEeCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC
Confidence 86 55554 4899999999988763 456777777777766
No 52
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.50 E-value=4.2e-14 Score=159.94 Aligned_cols=157 Identities=18% Similarity=0.203 Sum_probs=100.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcC-Cce
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKG-KMC 222 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~-~p~ 222 (473)
.+.++||+||||||||++|+++|+.+ +.+++.++++.+. .++.|+.+..++.+|..+. .. .|+
T Consensus 190 ~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~----~~~~~~ 265 (854)
T 1qvr_A 190 TKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVV----QSQGEV 265 (854)
T ss_dssp SCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC-----------CHHHHHHHHHHHHH----TTCSSE
T ss_pred CCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeehHHhhccCccchHHHHHHHHHHHHHH----hcCCCe
Confidence 35578999999999999999999997 8899999998886 5688999999999998775 43 789
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC----CCccccccCCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS----TLYAPLIRDGR 298 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~----~Ld~aLlR~GR 298 (473)
||||||+|.+.+.... . ....+.+.|..+++ ..++.+|++||.++ .++++|+| |
T Consensus 266 iL~IDEi~~l~~~~~~--~---g~~~~~~~L~~~l~---------------~~~i~~I~at~~~~~~~~~~d~aL~r--R 323 (854)
T 1qvr_A 266 ILFIDELHTVVGAGKA--E---GAVDAGNMLKPALA---------------RGELRLIGATTLDEYREIEKDPALER--R 323 (854)
T ss_dssp EEEECCC------------------------HHHHH---------------TTCCCEEEEECHHHHHHHTTCTTTCS--C
T ss_pred EEEEecHHHHhccCCc--c---chHHHHHHHHHHHh---------------CCCeEEEEecCchHHhhhccCHHHHh--C
Confidence 9999999999865321 1 11223334444444 35678999998774 48999999 9
Q ss_pred ceEEEe-cCCHHHHHHHHHhhcCC------CCCCHH---HHHHHHhcCCC
Q 011983 299 MEKFYW-APTREDRIGVCSGIFRT------DNVPKE---DIVKLVDTFPG 338 (473)
Q Consensus 299 fd~~i~-~P~~eeR~~Il~~~l~~------~~v~~~---~l~~l~~~~sg 338 (473)
|+.+.. .|+.+++.+||+.++.. ..++.+ .+..++.+|..
T Consensus 324 f~~i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~ 373 (854)
T 1qvr_A 324 FQPVYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYIT 373 (854)
T ss_dssp CCCEEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCC
T ss_pred CceEEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcc
Confidence 997444 69999999999866542 234444 34455555433
No 53
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.49 E-value=1.3e-13 Score=153.71 Aligned_cols=141 Identities=15% Similarity=0.176 Sum_probs=104.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccc--cCCCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELE--SGNAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~--s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+.++||+||||||||++|+++|+.+ +..++.++.+.+. .++.|+.+..++.+|+.+. ...++
T Consensus 205 ~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~~l~~~~~~~g~~e~~l~~~~~~~~----~~~~~ 280 (758)
T 1r6b_X 205 RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLE----QDTNS 280 (758)
T ss_dssp SSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC---CCCCCSSCHHHHHHHHHHHHS----SSSCE
T ss_pred cCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHHHHhccccccchHHHHHHHHHHHHH----hcCCe
Confidence 356789999999999999999999986 5667777777766 4688999999999998775 66789
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-----CCCccccccCC
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-----STLYAPLIRDG 297 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-----~~Ld~aLlR~G 297 (473)
||||||+|.+.+..... . ........|..+++ ..++.+|++||.+ ..+|++|.|
T Consensus 281 iL~IDEi~~l~~~~~~~-~---~~~~~~~~L~~~l~---------------~~~~~~I~at~~~~~~~~~~~d~aL~~-- 339 (758)
T 1r6b_X 281 ILFIDEIHTIIGAGAAS-G---GQVDAANLIKPLLS---------------SGKIRVIGSTTYQEFSNIFEKDRALAR-- 339 (758)
T ss_dssp EEEETTTTTTTTSCCSS-S---CHHHHHHHHSSCSS---------------SCCCEEEEEECHHHHHCCCCCTTSSGG--
T ss_pred EEEEechHHHhhcCCCC-c---chHHHHHHHHHHHh---------------CCCeEEEEEeCchHHhhhhhcCHHHHh--
Confidence 99999999998764321 1 11223333433222 4678899998864 357899999
Q ss_pred CceEEEe-cCCHHHHHHHHHhhcC
Q 011983 298 RMEKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 298 Rfd~~i~-~P~~eeR~~Il~~~l~ 320 (473)
||+.+.. .|+.++|.+||+.+..
T Consensus 340 Rf~~i~v~~p~~~e~~~il~~l~~ 363 (758)
T 1r6b_X 340 RFQKIDITEPSIEETVQIINGLKP 363 (758)
T ss_dssp GEEEEECCCCCHHHHHHHHHHHHH
T ss_pred CceEEEcCCCCHHHHHHHHHHHHH
Confidence 9985433 6999999999987654
No 54
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.48 E-value=7.4e-13 Score=122.23 Aligned_cols=144 Identities=19% Similarity=0.214 Sum_probs=97.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHH--HHcCCceEEEecCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 231 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~ILfIDEiDa 231 (473)
.++|+||||||||++++++++++ ...++.++++... ....++..+...... .....+.||||||+|.
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 113 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDER------GIDVVRHKIKEFARTAPIGGAPFKIIFLDEADA 113 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTT------CHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHhccccccceEEecccccc------ChHHHHHHHHHHhcccCCCccCceEEEEeChhh
Confidence 49999999999999999999985 3456666665432 122333333322100 0025789999999998
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 310 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 310 (473)
+... ....|+.+++ ....++.+|+|||.+..+++++.+ |+..+.. .|+.++
T Consensus 114 l~~~-------------~~~~l~~~l~-------------~~~~~~~~i~~~~~~~~~~~~l~~--r~~~i~~~~~~~~~ 165 (226)
T 2chg_A 114 LTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVPKEA 165 (226)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCCCHHH
T ss_pred cCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcCHHHHH--hCceeecCCCCHHH
Confidence 7432 1234555454 234678899999999999999999 8873333 478999
Q ss_pred HHHHHHhhcCC--CCCCHHHHHHHHhcC
Q 011983 311 RIGVCSGIFRT--DNVPKEDIVKLVDTF 336 (473)
Q Consensus 311 R~~Il~~~l~~--~~v~~~~l~~l~~~~ 336 (473)
..++++.++.. ..++.+.+..+....
T Consensus 166 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 193 (226)
T 2chg_A 166 MKKRLLEICEKEGVKITEDGLEALIYIS 193 (226)
T ss_dssp HHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 99999987753 345666666666543
No 55
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.48 E-value=1.8e-13 Score=152.74 Aligned_cols=126 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----------CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCL 224 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~IL 224 (473)
..+.++|||||||||||++|+++|+.+ +.+++.++. ..+|.|+.+..++.+|..+. ...|+||
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~---g~~~~G~~e~~l~~~~~~~~----~~~~~iL 271 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM---GTKYRGEFEDRLKKVMDEIR----QAGNIIL 271 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC-------------CTTHHHHHHHHH----TCCCCEE
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc---cccccchHHHHHHHHHHHHH----hcCCEEE
Confidence 345679999999999999999999997 778887777 46688998999999999887 7889999
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRM 299 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRf 299 (473)
||| +. . .....|+..++ ...+.+|+|||... .+|++|+| ||
T Consensus 272 fiD------~~-----~------~~~~~L~~~l~---------------~~~v~~I~at~~~~~~~~~~~d~al~r--Rf 317 (758)
T 3pxi_A 272 FID------AA-----I------DASNILKPSLA---------------RGELQCIGATTLDEYRKYIEKDAALER--RF 317 (758)
T ss_dssp EEC------C-------------------CCCTT---------------SSSCEEEEECCTTTTHHHHTTCSHHHH--SE
T ss_pred EEc------Cc-----h------hHHHHHHHHHh---------------cCCEEEEeCCChHHHHHHhhccHHHHh--hC
Confidence 999 11 0 11123333222 46789999999988 79999999 99
Q ss_pred eEEEe-cCCHHHHHHHHHhhcCC
Q 011983 300 EKFYW-APTREDRIGVCSGIFRT 321 (473)
Q Consensus 300 d~~i~-~P~~eeR~~Il~~~l~~ 321 (473)
..+.. .|+.+++.+||+.+...
T Consensus 318 ~~i~v~~p~~~~~~~il~~~~~~ 340 (758)
T 3pxi_A 318 QPIQVDQPSVDESIQILQGLRDR 340 (758)
T ss_dssp EEEECCCCCHHHHHHHHHHTTTT
T ss_pred cEEEeCCCCHHHHHHHHHHHHHH
Confidence 65333 59999999999977654
No 56
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.44 E-value=1.4e-13 Score=147.17 Aligned_cols=154 Identities=17% Similarity=0.191 Sum_probs=96.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChH-------HHHHHHHHHHHHHH-HcCCceEEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPA-------KLIRQRYREAADII-KKGKMCCLFIN 227 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~-------~~ir~~f~~A~~~~-~~~~p~ILfID 227 (473)
+++++||+||||||||++|+++|++++.+++.++++++.+....+.. ..++..|..+.... ...+++|||||
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliID 155 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMD 155 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEEC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEE
Confidence 67899999999999999999999999999999999876532110000 00112222221000 13678999999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC--CCccccccCCCceEEEe-
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRMEKFYW- 304 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~--~Ld~aLlR~GRfd~~i~- 304 (473)
|+|.+..... .....|.++++ ..+++||+++|... .++ ++.| |.. .+.
T Consensus 156 Eid~l~~~~~----------~~l~~L~~~l~---------------~~~~~iIli~~~~~~~~l~-~l~~--r~~-~i~f 206 (516)
T 1sxj_A 156 EVDGMSGGDR----------GGVGQLAQFCR---------------KTSTPLILICNERNLPKMR-PFDR--VCL-DIQF 206 (516)
T ss_dssp SGGGCCTTST----------THHHHHHHHHH---------------HCSSCEEEEESCTTSSTTG-GGTT--TSE-EEEC
T ss_pred CCCccchhhH----------HHHHHHHHHHH---------------hcCCCEEEEEcCCCCccch-hhHh--ceE-EEEe
Confidence 9999875321 11234555554 13445666666543 343 4544 433 444
Q ss_pred -cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCC
Q 011983 305 -APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 338 (473)
Q Consensus 305 -~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sg 338 (473)
.|+.+++.+++..++.. ..++.+.+..++....|
T Consensus 207 ~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G 243 (516)
T 1sxj_A 207 RRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG 243 (516)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 59999999999877654 34666677777665433
No 57
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.43 E-value=9e-13 Score=133.63 Aligned_cols=146 Identities=14% Similarity=0.212 Sum_probs=97.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----------CCCcEEecccccc-c-----------------CCCCCh-HHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM-----------GINPIMMSAGELE-S-----------------GNAGEP-AKL 204 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l-----------g~~~i~vs~s~l~-s-----------------~~~Ge~-~~~ 204 (473)
..|..++||||||||||++|+++++++ +.+++.+++.... + ...|.. ...
T Consensus 43 ~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~ 122 (384)
T 2qby_B 43 EVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGTPQAVLSSLAGKLTGFSVPKHGINLGEY 122 (384)
T ss_dssp CCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSCHHHHHHHHHHHHHCSCCCSSSSCTHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCCHHHHHHHHHHHhcCCCCCCCCCCHHHH
Confidence 557799999999999999999999997 8899999876533 1 011211 122
Q ss_pred HHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHH-HHHhhcCCCcccCCCCcccCCCCCceEEEec
Q 011983 205 IRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNAT-LMNIADNPTNVQLPGMYNQEENPRVPIIVTG 283 (473)
Q Consensus 205 ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~-Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT 283 (473)
+..++. .++...+ ||||||+|.+..... + .. +..+++ +. .++.||+||
T Consensus 123 ~~~l~~----~l~~~~~-vlilDEi~~l~~~~~---~---------~~~l~~l~~----------~~----~~~~iI~~t 171 (384)
T 2qby_B 123 IDKIKN----GTRNIRA-IIYLDEVDTLVKRRG---G---------DIVLYQLLR----------SD----ANISVIMIS 171 (384)
T ss_dssp HHHHHH----HHSSSCE-EEEEETTHHHHHSTT---S---------HHHHHHHHT----------SS----SCEEEEEEC
T ss_pred HHHHHH----HhccCCC-EEEEECHHHhccCCC---C---------ceeHHHHhc----------CC----cceEEEEEE
Confidence 222222 2223334 999999998864321 1 22 333333 11 678999999
Q ss_pred CCC---CCCccccccCCCceEEEe--cCCHHHHHHHHHhhcC----CCCCCHHHHHHHH
Q 011983 284 NDF---STLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFR----TDNVPKEDIVKLV 333 (473)
Q Consensus 284 N~~---~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~----~~~v~~~~l~~l~ 333 (473)
|.+ +.+++++++ ||...+. .|+.++..+|++..+. ...++.+.+..++
T Consensus 172 ~~~~~~~~l~~~l~s--r~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~ 228 (384)
T 2qby_B 172 NDINVRDYMEPRVLS--SLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIA 228 (384)
T ss_dssp SSTTTTTTSCHHHHH--TCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHH
T ss_pred CCCchHhhhCHHHHh--cCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHH
Confidence 988 678999998 8766666 4799999999998654 2345555444333
No 58
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.43 E-value=2.6e-13 Score=142.62 Aligned_cols=154 Identities=16% Similarity=0.241 Sum_probs=98.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
+..++||||||||||+||+++++++ +.+++.+++..+...+.+.........|.... ...++||||||+|.
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~vL~IDEi~~ 205 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLNDLVDSMKEGKLNEFREKY----RKKVDILLIDDVQF 205 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHHHHHHHHHHTTCHHHHHHHH----TTTCSEEEEECGGG
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHcccHHHHHHHh----cCCCCEEEEeCccc
Confidence 7789999999999999999999997 88899998876542111100000001222221 23799999999998
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CCC---CccccccCCCce--EEEe-
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FST---LYAPLIRDGRME--KFYW- 304 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~~---Ld~aLlR~GRfd--~~i~- 304 (473)
+.+... ....+..++..+.+ .+..||+||++ +.. ++++|++ ||. ..+.
T Consensus 206 l~~~~~-------~q~~l~~~l~~l~~----------------~~~~iIitt~~~~~~l~~l~~~L~s--R~~~g~~i~l 260 (440)
T 2z4s_A 206 LIGKTG-------VQTELFHTFNELHD----------------SGKQIVICSDREPQKLSEFQDRLVS--RFQMGLVAKL 260 (440)
T ss_dssp GSSCHH-------HHHHHHHHHHHHHT----------------TTCEEEEEESSCGGGCSSCCHHHHH--HHHSSBCCBC
T ss_pred ccCChH-------HHHHHHHHHHHHHH----------------CCCeEEEEECCCHHHHHHHHHHHHh--hccCCeEEEe
Confidence 865311 11223333322222 23345555554 444 8899999 885 4444
Q ss_pred -cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCC
Q 011983 305 -APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 305 -~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga 339 (473)
.|+.++|.+|++..+.. -.++.+.+..++....|.
T Consensus 261 ~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~gn 298 (440)
T 2z4s_A 261 EPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDDN 298 (440)
T ss_dssp CCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCSC
T ss_pred CCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCCC
Confidence 59999999999987753 346666666676665543
No 59
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.42 E-value=2.6e-12 Score=119.68 Aligned_cols=154 Identities=13% Similarity=0.124 Sum_probs=95.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc----------------cccccC--CCCChHHHHHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA----------------GELESG--NAGEPAKLIRQRYREAADII 216 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~----------------s~l~s~--~~Ge~~~~ir~~f~~A~~~~ 216 (473)
+.|..++|+||||+|||++++++++.++........ .++... ........++.+++.+....
T Consensus 43 ~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (250)
T 1njg_A 43 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAP 122 (250)
T ss_dssp CCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhch
Confidence 456789999999999999999999987543211000 000000 00112233444444321000
Q ss_pred HcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccC
Q 011983 217 KKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRD 296 (473)
Q Consensus 217 ~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~ 296 (473)
...++.+|+|||+|.+.. .....|+.+++ ....++.+|++||++..+++++++
T Consensus 123 ~~~~~~vlviDe~~~l~~-------------~~~~~l~~~l~-------------~~~~~~~~i~~t~~~~~~~~~l~~- 175 (250)
T 1njg_A 123 ARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLPVTILS- 175 (250)
T ss_dssp SSSSSEEEEEETGGGSCH-------------HHHHHHHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT-
T ss_pred hcCCceEEEEECcccccH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCCHHHHH-
Confidence 134589999999997632 12244555454 335678899999999999999988
Q ss_pred CCceEEEe-cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcC
Q 011983 297 GRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 336 (473)
Q Consensus 297 GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 336 (473)
|+..... .|+.++..++++.++... .++.+.+..+.+..
T Consensus 176 -r~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 217 (250)
T 1njg_A 176 -RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAA 217 (250)
T ss_dssp -TSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHH
T ss_pred -HhhhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHc
Confidence 7633322 478999999999887543 45566565555553
No 60
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.41 E-value=7.9e-13 Score=133.40 Aligned_cols=152 Identities=13% Similarity=0.122 Sum_probs=97.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEecccccccC----------------CCCChHHH-HHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKL-IRQR 208 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s~----------------~~Ge~~~~-ir~~ 208 (473)
..+..++||||||||||++++++++++ +..++.+++....+. ..|.+... +..+
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l 121 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHRETPYRVASAIAEAVGVRVPFTGLSVGEVYERL 121 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHH
Confidence 567799999999999999999999998 888888887653211 11222222 2222
Q ss_pred HHHHHHHHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCC-CCCceEEEecCCC
Q 011983 209 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-NPRVPIIVTGNDF 286 (473)
Q Consensus 209 f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~-~~~V~VIaTTN~~ 286 (473)
+. .++ ...|+||||||+|.+...+ ..+.+...|++..+ ... ..++.+|++||.+
T Consensus 122 ~~----~l~~~~~~~vlilDEi~~l~~~~--------~~~~~l~~l~~~~~------------~~~~~~~~~~I~~t~~~ 177 (387)
T 2v1u_A 122 VK----RLSRLRGIYIIVLDEIDFLPKRP--------GGQDLLYRITRINQ------------ELGDRVWVSLVGITNSL 177 (387)
T ss_dssp HH----HHTTSCSEEEEEEETTTHHHHST--------THHHHHHHHHHGGG------------CC-----CEEEEECSCS
T ss_pred HH----HHhccCCeEEEEEccHhhhcccC--------CCChHHHhHhhchh------------hcCCCceEEEEEEECCC
Confidence 22 222 4458999999999885432 01222233333222 011 5678999999988
Q ss_pred ---CCCccccccCCCceE-EEe--cCCHHHHHHHHHhhcCC----CCCCHHHHHHH
Q 011983 287 ---STLYAPLIRDGRMEK-FYW--APTREDRIGVCSGIFRT----DNVPKEDIVKL 332 (473)
Q Consensus 287 ---~~Ld~aLlR~GRfd~-~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l 332 (473)
+.+++.+.+ ||.. .+. .|+.+++.+|++..+.. ..++.+.+..+
T Consensus 178 ~~~~~l~~~l~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l 231 (387)
T 2v1u_A 178 GFVENLEPRVKS--SLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLC 231 (387)
T ss_dssp TTSSSSCHHHHT--TTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHH
T ss_pred chHhhhCHHHHh--cCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Confidence 788999999 8865 444 47899999999876542 34554444333
No 61
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.39 E-value=2.5e-12 Score=145.48 Aligned_cols=186 Identities=14% Similarity=0.133 Sum_probs=115.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC-----CCCChHHHHH----HHHHHHHHHHHcCCceE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG-----NAGEPAKLIR----QRYREAADIIKKGKMCC 223 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~-----~~Ge~~~~ir----~~f~~A~~~~~~~~p~I 223 (473)
+...+||+||||||||++|+++++.+ +.+|+.++++++... ..|.+..++. ..|..+ ++...++|
T Consensus 587 p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g~l~~~---~~~~~~~v 663 (854)
T 1qvr_A 587 PIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGGQLTEA---VRRRPYSV 663 (854)
T ss_dssp CSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC--------------CHHHH---HHHCSSEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccchHHHH---HHhCCCeE
Confidence 33589999999999999999999998 789999999876542 2222111110 112222 12556799
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC------------------
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND------------------ 285 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~------------------ 285 (473)
|||||+|.+. ..+...|++++++.....-.| ......+++||+|||.
T Consensus 664 l~lDEi~~l~-------------~~~~~~Ll~~l~~~~~~~~~g--~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l 728 (854)
T 1qvr_A 664 ILFDEIEKAH-------------PDVFNILLQILDDGRLTDSHG--RTVDFRNTVIILTSNLGSPLILEGLQKGWPYERI 728 (854)
T ss_dssp EEESSGGGSC-------------HHHHHHHHHHHTTTEECCSSS--CCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHH
T ss_pred EEEecccccC-------------HHHHHHHHHHhccCceECCCC--CEeccCCeEEEEecCcChHHHhhhcccccchHHH
Confidence 9999999653 245677888888543221111 1123467889999997
Q ss_pred --------CCCCccccccCCCceEEEe--cCCHHHHHHHHHhhcCC-----------CCCCHHHHHHHHh-cC--CCCch
Q 011983 286 --------FSTLYAPLIRDGRMEKFYW--APTREDRIGVCSGIFRT-----------DNVPKEDIVKLVD-TF--PGQSI 341 (473)
Q Consensus 286 --------~~~Ld~aLlR~GRfd~~i~--~P~~eeR~~Il~~~l~~-----------~~v~~~~l~~l~~-~~--sga~l 341 (473)
...+.|+|+. |++..+. .|+.++...|++.++.. ..++.+.+..+.. .| +|..-
T Consensus 729 ~~~v~~~~~~~f~~~l~~--Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~L~~~~~~~~gn~R 806 (854)
T 1qvr_A 729 RDEVFKVLQQHFRPEFLN--RLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLELTEAAKDFLAERGYDPVFGAR 806 (854)
T ss_dssp HHHHHHHHHTTSCHHHHH--TCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHHHHCBTTTBTS
T ss_pred HHHHHHHHHhhCCHHHHH--hcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEEECHHHHHHHHHcCCCCCCChH
Confidence 2346777888 9988776 37899999998876641 2356666666665 34 22221
Q ss_pred hhHHHHHHHhhHHHHHHHHHH
Q 011983 342 DFFGALRARVYDDEVRKWISE 362 (473)
Q Consensus 342 ~f~gal~~~~~~~av~~~i~~ 362 (473)
..- .++.+.+...+.+.+-.
T Consensus 807 ~L~-~~i~~~~~~~~~~~i~~ 826 (854)
T 1qvr_A 807 PLR-RVIQRELETPLAQKILA 826 (854)
T ss_dssp THH-HHHHHHTHHHHHHHHHH
T ss_pred HHH-HHHHHHHHHHHHHHHHh
Confidence 211 44555555554444443
No 62
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.39 E-value=1.8e-12 Score=127.72 Aligned_cols=148 Identities=19% Similarity=0.240 Sum_probs=101.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHH--HcCCceEEEecC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADII--KKGKMCCLFIND 228 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~--~~~~p~ILfIDE 228 (473)
.|. +|||||||||||++|+++++.+ +.+++.++++...+ ... ++..+....... ....+.||+|||
T Consensus 38 ~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~~~~~~vliiDe 110 (319)
T 2chq_A 38 IPH-LLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG--IDV----VRHKIKEFARTAPIGGAPFKIIFLDE 110 (319)
T ss_dssp CCC-EEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC--TTT----SSHHHHHHHHSCCSSSCCCEEEEEET
T ss_pred CCe-EEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC--hHH----HHHHHHHHHhcCCCCCCCceEEEEeC
Confidence 344 9999999999999999999996 34577787765432 111 222222221000 025589999999
Q ss_pred CCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCC
Q 011983 229 LDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APT 307 (473)
Q Consensus 229 iDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~ 307 (473)
+|.+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.+ .|+
T Consensus 111 ~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~i~~~~~~ 162 (319)
T 2chq_A 111 ADALTAD-------------AQAALRRTME-------------MYSKSCRFILSCNYVSRIIEPIQS--RCAVFRFKPVP 162 (319)
T ss_dssp GGGSCHH-------------HHHTTGGGTS-------------SSSSSEEEEEEESCGGGSCHHHHT--TCEEEECCCCC
T ss_pred CCcCCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCChhhcchHHHh--hCeEEEecCCC
Confidence 9977431 1234555444 445778899999999999999999 8864433 589
Q ss_pred HHHHHHHHHhhcCCCC--CCHHHHHHHHhcCCC
Q 011983 308 REDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 338 (473)
Q Consensus 308 ~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~sg 338 (473)
.+++..++..++...+ ++.+.+..++....|
T Consensus 163 ~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G 195 (319)
T 2chq_A 163 KEAMKKRLLEICEKEGVKITEDGLEALIYISGG 195 (319)
T ss_dssp HHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC
Confidence 9999999998887644 567777777755433
No 63
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.35 E-value=5.3e-12 Score=126.46 Aligned_cols=144 Identities=13% Similarity=0.177 Sum_probs=97.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhC------CCcEEecccccccCCCCChHHHHHHHHHHHHHH------------HHcCCc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMG------INPIMMSAGELESGNAGEPAKLIRQRYREAADI------------IKKGKM 221 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg------~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~------------~~~~~p 221 (473)
+|||||||||||++|+++++.++ ..++.+++++.. ....+++.+...... .....+
T Consensus 61 ~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (353)
T 1sxj_D 61 MLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER------GISIVREKVKNFARLTVSKPSKHDLENYPCPPY 134 (353)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC------CHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSC
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc------chHHHHHHHHHHhhhcccccchhhcccCCCCCc
Confidence 99999999999999999999854 456777766532 123333333322210 002346
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceE
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK 301 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~ 301 (473)
.||||||+|.+... ....|+.+++ +...++.+|++||.+..+++++++ |+..
T Consensus 135 ~vliiDE~~~l~~~-------------~~~~Ll~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--R~~~ 186 (353)
T 1sxj_D 135 KIIILDEADSMTAD-------------AQSALRRTME-------------TYSGVTRFCLICNYVTRIIDPLAS--QCSK 186 (353)
T ss_dssp EEEEETTGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--HSEE
T ss_pred eEEEEECCCccCHH-------------HHHHHHHHHH-------------hcCCCceEEEEeCchhhCcchhhc--cCce
Confidence 79999999977432 1244555555 234567788899999999999999 8874
Q ss_pred EEe-cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCC
Q 011983 302 FYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFP 337 (473)
Q Consensus 302 ~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~s 337 (473)
+.+ .|+.++...+++.++... .++.+.+..++....
T Consensus 187 i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~ 225 (353)
T 1sxj_D 187 FRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISA 225 (353)
T ss_dssp EECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTS
T ss_pred EEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcC
Confidence 433 588999999999887654 466766666665533
No 64
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.32 E-value=1.6e-11 Score=123.99 Aligned_cols=147 Identities=12% Similarity=0.105 Sum_probs=100.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+|||||||+|||++|+++|+.+... ++.+...+ .-...+...++.+.+
T Consensus 22 ~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~---~~~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 22 RGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEK---GKNTLGVDAVREVTE 98 (334)
T ss_dssp CCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCT---TCSSBCHHHHHHHHH
T ss_pred CcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccc---cCCCCCHHHHHHHHH
Confidence 678899999999999999999999997532 22222210 000122455677666
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+...-....+.|++|||+|.+... ..+.|+..++ ++..++.+|++||.++.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~~~-------------a~naLLk~lE-------------ep~~~~~~Il~t~~~~~l~ 152 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLTDA-------------AANALLKTLE-------------EPPAETWFFLATREPERLL 152 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBCHH-------------HHHHHHHHHT-------------SCCTTEEEEEEESCGGGSC
T ss_pred HHhhccccCCcEEEEECchhhcCHH-------------HHHHHHHHhc-------------CCCCCeEEEEEeCChHhCc
Confidence 5531111345789999999977421 2245666565 4567788999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCCCCCHHHHHHHHhc
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTDNVPKEDIVKLVDT 335 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~v~~~~l~~l~~~ 335 (473)
+++++ |+..+.+ .|+.++..+++.... .++.+.+..++..
T Consensus 153 ~ti~S--Rc~~~~~~~~~~~~~~~~L~~~~---~~~~~~~~~l~~~ 193 (334)
T 1a5t_A 153 ATLRS--RCRLHYLAPPPEQYAVTWLSREV---TMSQDALLAALRL 193 (334)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHC---CCCHHHHHHHHHH
T ss_pred HHHhh--cceeeeCCCCCHHHHHHHHHHhc---CCCHHHHHHHHHH
Confidence 99999 8765444 589999999988776 4566655555443
No 65
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.31 E-value=8.5e-12 Score=123.29 Aligned_cols=144 Identities=19% Similarity=0.206 Sum_probs=96.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEecccccccCCCCChHHHHHHHHHHHHHH--HHcCCceEEEecCCCC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADI--IKKGKMCCLFINDLDA 231 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~--~~~~~p~ILfIDEiDa 231 (473)
.+|||||||||||++|+++++.+. ..++.+++++... ...++..+...... .....+.||+|||+|.
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~ 121 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDERG------INVIREKVKEFARTKPIGGASFKIIFLDEADA 121 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHHH------HHTTHHHHHHHHHSCCGGGCSCEEEEEETGGG
T ss_pred eEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccCc------hHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCc
Confidence 499999999999999999999963 2356666553321 12222222222100 0025688999999997
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cCCHHH
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTRED 310 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~ee 310 (473)
+... ....|+.+++ ....++.+|++||.+..+++++.+ |+..+.+ .|+.++
T Consensus 122 l~~~-------------~~~~L~~~le-------------~~~~~~~~i~~~~~~~~l~~~l~s--r~~~~~~~~l~~~~ 173 (327)
T 1iqp_A 122 LTQD-------------AQQALRRTME-------------MFSSNVRFILSCNYSSKIIEPIQS--RCAIFRFRPLRDED 173 (327)
T ss_dssp SCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHH--TEEEEECCCCCHHH
T ss_pred CCHH-------------HHHHHHHHHH-------------hcCCCCeEEEEeCCccccCHHHHh--hCcEEEecCCCHHH
Confidence 7421 2244555555 334678899999999999999999 8774433 478999
Q ss_pred HHHHHHhhcCCCC--CCHHHHHHHHhcC
Q 011983 311 RIGVCSGIFRTDN--VPKEDIVKLVDTF 336 (473)
Q Consensus 311 R~~Il~~~l~~~~--v~~~~l~~l~~~~ 336 (473)
...+++.++...+ ++.+.+..++...
T Consensus 174 ~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 201 (327)
T 1iqp_A 174 IAKRLRYIAENEGLELTEEGLQAILYIA 201 (327)
T ss_dssp HHHHHHHHHHTTTCEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHHHC
Confidence 9999998876554 5666666555543
No 66
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.31 E-value=2.3e-11 Score=114.43 Aligned_cols=145 Identities=15% Similarity=0.202 Sum_probs=94.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.+..++|+||||||||++|+++++++. .+++.++++++...+. ..++ ....+.+|||||+|.+
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~------~~~~~~vliiDe~~~~ 116 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASIST--------ALLE------GLEQFDLICIDDVDAV 116 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCG--------GGGT------TGGGSSEEEEETGGGG
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHH--------HHHH------hccCCCEEEEeccccc
Confidence 567899999999999999999999864 6788888877664321 1111 0245889999999987
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCC-CC---CCccccccCCCce--EEEe--
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGND-FS---TLYAPLIRDGRME--KFYW-- 304 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~-~~---~Ld~aLlR~GRfd--~~i~-- 304 (473)
.... .....|..+++. . .....+.+|+|||. +. .+++.+.+ ||. ..+.
T Consensus 117 ~~~~-----------~~~~~l~~~l~~----------~-~~~~~~~ii~~~~~~~~~~~~~~~~l~~--r~~~~~~i~l~ 172 (242)
T 3bos_A 117 AGHP-----------LWEEAIFDLYNR----------V-AEQKRGSLIVSASASPMEAGFVLPDLVS--RMHWGLTYQLQ 172 (242)
T ss_dssp TTCH-----------HHHHHHHHHHHH----------H-HHHCSCEEEEEESSCTTTTTCCCHHHHH--HHHHSEEEECC
T ss_pred cCCH-----------HHHHHHHHHHHH----------H-HHcCCCeEEEEcCCCHHHHHHhhhhhhh--HhhcCceEEeC
Confidence 5431 011223333220 0 00123335555553 33 45688888 774 5566
Q ss_pred cCCHHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCC
Q 011983 305 APTREDRIGVCSGIFRT--DNVPKEDIVKLVDTFPG 338 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sg 338 (473)
.|+.+++.++++.++.. ..++.+.+..+...+.|
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g 208 (242)
T 3bos_A 173 PMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR 208 (242)
T ss_dssp CCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC
Confidence 48999999999988754 35677777777776544
No 67
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.3e-11 Score=121.72 Aligned_cols=147 Identities=14% Similarity=0.181 Sum_probs=99.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH---cCCceEEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK---KGKMCCLFI 226 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~---~~~p~ILfI 226 (473)
+.|. +|||||||+|||++|+++++++ +..++.+++++.. ....++.+++....... ...+.||+|
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~------~~~~i~~~~~~~~~~~~~~~~~~~~viii 113 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDR------GIDVVRNQIKHFAQKKLHLPPGKHKIVIL 113 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCC------SHHHHHTHHHHHHHBCCCCCTTCCEEEEE
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCcccc------ChHHHHHHHHHHHhccccCCCCCceEEEE
Confidence 4455 9999999999999999999995 3456677665422 13445555544321000 234889999
Q ss_pred cCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-c
Q 011983 227 NDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-A 305 (473)
Q Consensus 227 DEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~ 305 (473)
||+|.+... ....|+.+++ +...++.+|++||.+..+++++.+ |+..+.. .
T Consensus 114 De~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~~~~~~l~~~l~s--r~~~i~~~~ 165 (323)
T 1sxj_B 114 DEADSMTAG-------------AQQALRRTME-------------LYSNSTRFAFACNQSNKIIEPLQS--QCAILRYSK 165 (323)
T ss_dssp ESGGGSCHH-------------HHHTTHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCC
T ss_pred ECcccCCHH-------------HHHHHHHHHh-------------ccCCCceEEEEeCChhhchhHHHh--hceEEeecC
Confidence 999977431 1234455444 334677889999999999999999 7764333 5
Q ss_pred CCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcC
Q 011983 306 PTREDRIGVCSGIFRTD--NVPKEDIVKLVDTF 336 (473)
Q Consensus 306 P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~ 336 (473)
|+.++..++++.++... .++.+.+..++...
T Consensus 166 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 198 (323)
T 1sxj_B 166 LSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTA 198 (323)
T ss_dssp CCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHc
Confidence 89999999999877543 45666665555543
No 68
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.28 E-value=2.8e-11 Score=122.09 Aligned_cols=150 Identities=15% Similarity=0.164 Sum_probs=98.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC------------------------cEEecccccccCCCCChHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN------------------------PIMMSAGELESGNAGEPAKLIRQRYR 210 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~------------------------~i~vs~s~l~s~~~Ge~~~~ir~~f~ 210 (473)
+.|..+||+||||||||++|+++++.++.. ++.++... . .....++.+++
T Consensus 36 ~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~~~~l~~ 109 (373)
T 1jr3_A 36 RIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCREIEQGRFVDLIEIDAAS----R--TKVEDTRDLLD 109 (373)
T ss_dssp CCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHHHHTSCCSSCEEEETTC----S--CCSSCHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhccCCCceEEecccc----c--CCHHHHHHHHH
Confidence 456789999999999999999999997542 22222221 0 11123455555
Q ss_pred HHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCc
Q 011983 211 EAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLY 290 (473)
Q Consensus 211 ~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld 290 (473)
.+........+.||+|||+|.+.. .....|+.+++ +...++.+|++||.+..++
T Consensus 110 ~~~~~~~~~~~~vliiDe~~~l~~-------------~~~~~Ll~~le-------------~~~~~~~~Il~~~~~~~l~ 163 (373)
T 1jr3_A 110 NVQYAPARGRFKVYLIDEVHMLSR-------------HSFNALLKTLE-------------EPPEHVKFLLATTDPQKLP 163 (373)
T ss_dssp HTTSCCSSSSSEEEEEECGGGSCH-------------HHHHHHHHHHH-------------SCCSSEEEEEEESCGGGSC
T ss_pred HHhhccccCCeEEEEEECcchhcH-------------HHHHHHHHHHh-------------cCCCceEEEEEeCChHhCc
Confidence 432110134578999999997732 12244555555 3456788999999999999
Q ss_pred cccccCCCceEEEe-cCCHHHHHHHHHhhcCCC--CCCHHHHHHHHhcCCC
Q 011983 291 APLIRDGRMEKFYW-APTREDRIGVCSGIFRTD--NVPKEDIVKLVDTFPG 338 (473)
Q Consensus 291 ~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~~sg 338 (473)
+++++ |+..+-. .|+.++..++++.++... .++.+.+..++....|
T Consensus 164 ~~l~s--r~~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G 212 (373)
T 1jr3_A 164 VTILS--RCLQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG 212 (373)
T ss_dssp HHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS
T ss_pred HHHHh--heeEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC
Confidence 99998 7743333 589999999999887643 4455556656555433
No 69
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.28 E-value=6.1e-12 Score=126.04 Aligned_cols=142 Identities=13% Similarity=0.128 Sum_probs=88.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHH-HHHHHHHHHH-cCC---ceEEEecCCCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQ-RYREAADIIK-KGK---MCCLFINDLDAG 232 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~-~f~~A~~~~~-~~~---p~ILfIDEiDal 232 (473)
.++|||||||||||++|+++|+.++.+++.+++..-.. ....+.. .+........ ... .+||||||+|.+
T Consensus 47 ~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~-----~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~ 121 (331)
T 2r44_A 47 GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLL-----PSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRS 121 (331)
T ss_dssp CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCC-----HHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGS
T ss_pred CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCC-----hhhcCCceeecCCCCceEeccCcccccEEEEEccccC
Confidence 47999999999999999999999999998887631100 0000000 0000000000 112 379999999975
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----CCccccccCCCceEEEe--c
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----TLYAPLIRDGRMEKFYW--A 305 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----~Ld~aLlR~GRfd~~i~--~ 305 (473)
.. .+...|++.+++. .+.++|... ....++.||+|+|..+ .|+++|++ ||+..+. .
T Consensus 122 ~~-------------~~~~~Ll~~l~~~-~~~~~g~~~-~~~~~~~viat~np~~~~~~~~l~~~l~~--Rf~~~i~i~~ 184 (331)
T 2r44_A 122 PA-------------KVQSALLECMQEK-QVTIGDTTY-PLDNPFLVLATQNPVEQEGTYPLPEAQVD--RFMMKIHLTY 184 (331)
T ss_dssp CH-------------HHHHHHHHHHHHS-EEEETTEEE-ECCSSCEEEEEECTTCCSCCCCCCHHHHT--TSSEEEECCC
T ss_pred CH-------------HHHHHHHHHHhcC-ceeeCCEEE-ECCCCEEEEEecCCCcccCcccCCHHHHh--heeEEEEcCC
Confidence 32 2334555555522 222333211 2234677888888543 38999999 9987666 5
Q ss_pred CCHHHHHHHHHhhcCC
Q 011983 306 PTREDRIGVCSGIFRT 321 (473)
Q Consensus 306 P~~eeR~~Il~~~l~~ 321 (473)
|+.++|.+|++.....
T Consensus 185 p~~~~~~~il~~~~~~ 200 (331)
T 2r44_A 185 LDKESELEVMRRVSNM 200 (331)
T ss_dssp CCHHHHHHHHHHHHCT
T ss_pred CCHHHHHHHHHhcccc
Confidence 9999999999987754
No 70
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.28 E-value=4.4e-11 Score=120.30 Aligned_cols=147 Identities=17% Similarity=0.360 Sum_probs=90.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh-CC----------------------------CcEEecccccccCCCCC-hHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM-GI----------------------------NPIMMSAGELESGNAGE-PAKL 204 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l-g~----------------------------~~i~vs~s~l~s~~~Ge-~~~~ 204 (473)
+.|. +||+||||+|||++++++++++ +. .++.++.+. .+. ....
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~ 108 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASNRKLELNVVSSPYHLEITPSD-----MGNNDRIV 108 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------CCEECSSEEEECCC---------CCHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccccccceeeeecccceEEecHhh-----cCCcchHH
Confidence 4556 9999999999999999999974 11 112222211 111 1113
Q ss_pred HHHHHHHHHHHHH----------cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCC
Q 011983 205 IRQRYREAADIIK----------KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN 274 (473)
Q Consensus 205 ir~~f~~A~~~~~----------~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~ 274 (473)
+++.++.+..... ...|.||+|||++.+-. .....|+.+++ +..
T Consensus 109 ~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L~~-------------~~~~~L~~~le-------------~~~ 162 (354)
T 1sxj_E 109 IQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSLTK-------------DAQAALRRTME-------------KYS 162 (354)
T ss_dssp HHHHHHHHTTTTC------------CCEEEEEECTTSSCH-------------HHHHHHHHHHH-------------HST
T ss_pred HHHHHHHHHHhccccccccccccCCCCeEEEEeCccccCH-------------HHHHHHHHHHH-------------hhc
Confidence 4444444321000 23678999999998421 11234555444 223
Q ss_pred CCceEEEecCCCCCCccccccCCCceEEEe-cCCHHHHHHHHHhhcCCCC--CC-HHHHHHHHhc
Q 011983 275 PRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRTDN--VP-KEDIVKLVDT 335 (473)
Q Consensus 275 ~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~~~--v~-~~~l~~l~~~ 335 (473)
.++.+|++||+++.+.+++++ |+..+-+ .|+.++..++++.++...+ ++ .+.+..++..
T Consensus 163 ~~~~~Il~t~~~~~l~~~l~s--R~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~l~~i~~~ 225 (354)
T 1sxj_E 163 KNIRLIMVCDSMSPIIAPIKS--QCLLIRCPAPSDSEISTILSDVVTNERIQLETKDILKRIAQA 225 (354)
T ss_dssp TTEEEEEEESCSCSSCHHHHT--TSEEEECCCCCHHHHHHHHHHHHHHHTCEECCSHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHh--hceEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHH
Confidence 567899999999999999999 8843333 5899999999998876543 34 5555444443
No 71
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.27 E-value=4.2e-11 Score=120.45 Aligned_cols=153 Identities=15% Similarity=0.246 Sum_probs=96.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh------CCCcEEeccccccc----------C------CCCChHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELES----------G------NAGEPAKLIRQRYREA 212 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l------g~~~i~vs~s~l~s----------~------~~Ge~~~~ir~~f~~A 212 (473)
..+..++|+||||||||++++++++.+ +..++.+++..... . ..|.+.. .+++..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~---~~~~~l 119 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTPYRVLADLLESLDVKVPFTGLSIA---ELYRRL 119 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSHHHHHHHHTTTTSCCCCSSSCCHH---HHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HHHHHH
Confidence 457789999999999999999999998 88888888653211 0 1122222 222322
Q ss_pred HHHHHc-CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC---CC
Q 011983 213 ADIIKK-GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---ST 288 (473)
Q Consensus 213 ~~~~~~-~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~---~~ 288 (473)
...+.. ..|+||+|||+|.+..... . .+...|+.++++ ....++.+|++||.+ ..
T Consensus 120 ~~~l~~~~~~~vlilDE~~~l~~~~~---~------~~l~~l~~~~~~------------~~~~~~~~I~~~~~~~~~~~ 178 (386)
T 2qby_A 120 VKAVRDYGSQVVIVLDEIDAFVKKYN---D------DILYKLSRINSE------------VNKSKISFIGITNDVKFVDL 178 (386)
T ss_dssp HHHHHTCCSCEEEEEETHHHHHHSSC---S------THHHHHHHHHHS------------CCC--EEEEEEESCGGGGGG
T ss_pred HHHHhccCCeEEEEEcChhhhhccCc---C------HHHHHHhhchhh------------cCCCeEEEEEEECCCChHhh
Confidence 223333 4499999999998864321 1 122334443431 134678899999987 46
Q ss_pred CccccccCCCce-EEEe--cCCHHHHHHHHHhhcC----CCCCCHHHHHHHH
Q 011983 289 LYAPLIRDGRME-KFYW--APTREDRIGVCSGIFR----TDNVPKEDIVKLV 333 (473)
Q Consensus 289 Ld~aLlR~GRfd-~~i~--~P~~eeR~~Il~~~l~----~~~v~~~~l~~l~ 333 (473)
+++.+.+ ||. ..+. .++.++..+|++..+. ...++.+.+..+.
T Consensus 179 ~~~~~~~--r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~ 228 (386)
T 2qby_A 179 LDPRVKS--SLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCA 228 (386)
T ss_dssp CTTHHHH--TTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHH
T ss_pred hCHHHhc--cCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Confidence 7888888 664 2444 4789999999987653 2455555444333
No 72
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.26 E-value=8.4e-11 Score=118.74 Aligned_cols=158 Identities=13% Similarity=0.070 Sum_probs=101.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
.+|..++||||||+|||++++++|+.++.++...++..+.. ...+..++.. ...+.|+||||++.+..
T Consensus 49 ~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~------~~~l~~~~~~------~~~~~v~~iDE~~~l~~ 116 (334)
T 1in4_A 49 EVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK------QGDMAAILTS------LERGDVLFIDEIHRLNK 116 (334)
T ss_dssp CCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS------HHHHHHHHHH------CCTTCEEEEETGGGCCH
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC------HHHHHHHHHH------ccCCCEEEEcchhhcCH
Confidence 45678999999999999999999999999887766554321 2333333321 23578999999997753
Q ss_pred cCCCCCccchhhHHHHHHHHHhhcCCCc-ccC-CCC---cccCCCCCceEEEecCCCCCCccccccCCCceEEEe--cCC
Q 011983 235 RMGGTTQYTVNNQMVNATLMNIADNPTN-VQL-PGM---YNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APT 307 (473)
Q Consensus 235 ~r~~~~~~~~~~~~v~~~Ll~lld~~~~-v~l-~g~---~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~--~P~ 307 (473)
. +...|+..+++... +-+ .+. ........+.+|++||++..|++++++ ||...+. .|+
T Consensus 117 ~-------------~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~~~~Ls~~l~s--R~~l~~~Ld~~~ 181 (334)
T 1in4_A 117 A-------------VEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTRSGLLSSPLRS--RFGIILELDFYT 181 (334)
T ss_dssp H-------------HHHHHHHHHHTSCCCC---------------CCCEEEEEESCGGGSCHHHHT--TCSEEEECCCCC
T ss_pred H-------------HHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCCcccCCHHHHH--hcCceeeCCCCC
Confidence 1 11223322221100 000 000 000122456788899999999999999 9976655 589
Q ss_pred HHHHHHHHHhhcCC--CCCCHHHHHHHHhcCCCC
Q 011983 308 REDRIGVCSGIFRT--DNVPKEDIVKLVDTFPGQ 339 (473)
Q Consensus 308 ~eeR~~Il~~~l~~--~~v~~~~l~~l~~~~sga 339 (473)
.+++.+|++..... ..++.+.+..+++...|.
T Consensus 182 ~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G~ 215 (334)
T 1in4_A 182 VKELKEIIKRAASLMDVEIEDAAAEMIAKRSRGT 215 (334)
T ss_dssp HHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTTC
T ss_pred HHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCCC
Confidence 99999999977643 346667777777765443
No 73
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.25 E-value=1.4e-12 Score=130.79 Aligned_cols=143 Identities=17% Similarity=0.204 Sum_probs=83.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC-------CcEEeccccc---------------------ccCCCCChHHHH----
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI-------NPIMMSAGEL---------------------ESGNAGEPAKLI---- 205 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~-------~~i~vs~s~l---------------------~s~~~Ge~~~~i---- 205 (473)
.++|||||||||||++|+++++.++. +| ++... .....+.+...+
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~ 122 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPV---SSPNVEMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGAL 122 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTT---CCSSGGGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEE
T ss_pred ceEEEECCCCccHHHHHHHHHHhCccccccccccc---cccccccccchhhhhccccccCCCcccccCCCcchhhheeec
Confidence 35999999999999999999999863 21 11100 000112222211
Q ss_pred --HHHHHHHH-----HHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCC-cccCCCCcccCCCCCc
Q 011983 206 --RQRYREAA-----DIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPT-NVQLPGMYNQEENPRV 277 (473)
Q Consensus 206 --r~~f~~A~-----~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~-~v~l~g~~~~~~~~~V 277 (473)
+..+..+. ..+....++||||||+|.+... +...|+.++++.+ .+...|.. .....++
T Consensus 123 ~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~~~-------------~~~~Ll~~le~~~~~~~~~g~~-~~~~~~~ 188 (350)
T 1g8p_A 123 DIERAISKGEKAFEPGLLARANRGYLYIDECNLLEDH-------------IVDLLLDVAQSGENVVERDGLS-IRHPARF 188 (350)
T ss_dssp CHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSCHH-------------HHHHHHHHHHHSEEEECCTTCC-EEEECCE
T ss_pred hhhhhhcCCceeecCceeeecCCCEEEEeChhhCCHH-------------HHHHHHHHHhcCceEEEecceE-EeeCCce
Confidence 12222210 0011224789999999977432 2345555554211 12222220 0112478
Q ss_pred eEEEecCCCC-CCccccccCCCceEEEec--C-CHHHHHHHHHhhc
Q 011983 278 PIIVTGNDFS-TLYAPLIRDGRMEKFYWA--P-TREDRIGVCSGIF 319 (473)
Q Consensus 278 ~VIaTTN~~~-~Ld~aLlR~GRfd~~i~~--P-~~eeR~~Il~~~l 319 (473)
.||+|||..+ .++++|++ ||+..+.+ | +.++|.+|++..+
T Consensus 189 ~li~~~n~~~~~l~~~L~~--R~~~~~~l~~~~~~~~~~~il~~~~ 232 (350)
T 1g8p_A 189 VLVGSGNPEEGDLRPQLLD--RFGLSVEVLSPRDVETRVEVIRRRD 232 (350)
T ss_dssp EEEEEECSCSCCCCHHHHT--TCSEEEECCCCCSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCCCCHHHHh--hcceEEEcCCCCcHHHHHHHHHHHH
Confidence 8999999755 89999999 99887773 5 7888889987653
No 74
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.24 E-value=9e-12 Score=110.72 Aligned_cols=91 Identities=10% Similarity=0.096 Sum_probs=65.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
.+..+||+||||||||++|+++++.. +.+|+ ++++.+... ..+...|..| .+++|||||+|.+
T Consensus 23 ~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~------~~~~~~~~~a-------~~g~l~ldei~~l 88 (145)
T 3n70_A 23 TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA------PQLNDFIALA-------QGGTLVLSHPEHL 88 (145)
T ss_dssp CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS------SCHHHHHHHH-------TTSCEEEECGGGS
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc------hhhhcHHHHc-------CCcEEEEcChHHC
Confidence 34569999999999999999999986 77899 998876643 2234455544 3689999999977
Q ss_pred cccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 233 AGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 233 ~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
... +...|+.++. ....++.+|+|||.+
T Consensus 89 ~~~-------------~q~~Ll~~l~-------------~~~~~~~~I~~t~~~ 116 (145)
T 3n70_A 89 TRE-------------QQYHLVQLQS-------------QEHRPFRLIGIGDTS 116 (145)
T ss_dssp CHH-------------HHHHHHHHHH-------------SSSCSSCEEEEESSC
T ss_pred CHH-------------HHHHHHHHHh-------------hcCCCEEEEEECCcC
Confidence 432 2234555443 334567899999974
No 75
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.24 E-value=6.5e-11 Score=119.75 Aligned_cols=152 Identities=11% Similarity=0.105 Sum_probs=98.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecccccccC----------------CCCChHHHHHHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESG----------------NAGEPAKLIRQRYREAADIIK 217 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~f~~A~~~~~ 217 (473)
..++|+||||||||++++++++.+ +..++.+++....+. ..|..... +++.....+.
T Consensus 45 ~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~---~~~~l~~~l~ 121 (389)
T 1fnn_A 45 PRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAIIGEIARSLNIPFPRRGLSRDE---FLALLVEHLR 121 (389)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHHHHHHHHHTTCCCCSSCCCHHH---HHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHHHHHHHHHhCccCCCCCCCHHH---HHHHHHHHHh
Confidence 389999999999999999999998 677888886543210 01211222 2222222222
Q ss_pred -cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC---CCCcccc
Q 011983 218 -KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF---STLYAPL 293 (473)
Q Consensus 218 -~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~---~~Ld~aL 293 (473)
...|.||||||+|.+- ......|+.++++ +......++.||++||.+ +.+++.+
T Consensus 122 ~~~~~~vlilDE~~~l~-------------~~~~~~L~~~~~~---------~~~~~~~~~~iI~~~~~~~~~~~l~~~~ 179 (389)
T 1fnn_A 122 ERDLYMFLVLDDAFNLA-------------PDILSTFIRLGQE---------ADKLGAFRIALVIVGHNDAVLNNLDPST 179 (389)
T ss_dssp HTTCCEEEEEETGGGSC-------------HHHHHHHHHHTTC---------HHHHSSCCEEEEEEESSTHHHHTSCHHH
T ss_pred hcCCeEEEEEECccccc-------------hHHHHHHHHHHHh---------CCCCCcCCEEEEEEECCchHHHHhCHHh
Confidence 4569999999999871 1233455554431 000011578999999988 6788888
Q ss_pred ccCCCceE-EEe--cCCHHHHHHHHHhhcCC----CCCCHHHHHHHHhcC
Q 011983 294 IRDGRMEK-FYW--APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTF 336 (473)
Q Consensus 294 lR~GRfd~-~i~--~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~ 336 (473)
.+ ||.. .+. .++.++..++++..+.. ..++.+.+..+....
T Consensus 180 ~~--r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 227 (389)
T 1fnn_A 180 RG--IMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADIT 227 (389)
T ss_dssp HH--HHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHH
T ss_pred hh--cCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHH
Confidence 88 7764 444 36889999999876643 457777666555543
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.24 E-value=1.4e-11 Score=123.20 Aligned_cols=156 Identities=15% Similarity=0.167 Sum_probs=94.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc-----C--------CCCChHHHHHHHHHHHHHHHHc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES-----G--------NAGEPAKLIRQRYREAADIIKK 218 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s-----~--------~~Ge~~~~ir~~f~~A~~~~~~ 218 (473)
..+..+||+||||||||++|++|++.+ +.+|+.++++.+.. . +.|... .....|..|
T Consensus 23 ~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg~~~g~~tg~~~-~~~g~~~~a------ 95 (304)
T 1ojl_A 23 PSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFGHEKGAFTGADK-RREGRFVEA------ 95 (304)
T ss_dssp STTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTCCCSSCCC---C-CCCCHHHHH------
T ss_pred CCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcCccccccCchhh-hhcCHHHhc------
Confidence 345679999999999999999999975 57899999876532 1 111110 111234433
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCcc
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYA 291 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~ 291 (473)
.+++|||||||.+... +...|+.++++.+...+++. .....++.||+|||.. ..+++
T Consensus 96 -~~g~L~LDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~riI~atn~~l~~~v~~g~fr~ 159 (304)
T 1ojl_A 96 -DGGTLFLDEIGDISPL-------------MQVRLLRAIQEREVQRVGSN--QTISVDVRLIAATHRDLAEEVSAGRFRQ 159 (304)
T ss_dssp -TTSEEEEESCTTCCHH-------------HHHHHHHHHHSSBCCBTTBC--CCCBCCCEEEEEESSCHHHHHHHTSSCH
T ss_pred -CCCEEEEeccccCCHH-------------HHHHHHHHHhcCEeeecCCc--ccccCCeEEEEecCccHHHHHHhCCcHH
Confidence 3679999999987432 23456666664322222222 1234578899999985 23455
Q ss_pred ccccCCCceEE-EecCCHHHHH----HHHHhhcCC---------CCCCHHHHHHHHhc
Q 011983 292 PLIRDGRMEKF-YWAPTREDRI----GVCSGIFRT---------DNVPKEDIVKLVDT 335 (473)
Q Consensus 292 aLlR~GRfd~~-i~~P~~eeR~----~Il~~~l~~---------~~v~~~~l~~l~~~ 335 (473)
.|.. ||... +.+|...+|. .+++.++.. ..++.+.+..+...
T Consensus 160 ~L~~--Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~ 215 (304)
T 1ojl_A 160 DLYY--RLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHY 215 (304)
T ss_dssp HHHH--HHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHC
T ss_pred HHHh--hcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcC
Confidence 6666 66433 5577766553 355444321 24666666666654
No 77
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.22 E-value=1e-11 Score=120.59 Aligned_cols=154 Identities=16% Similarity=0.183 Sum_probs=91.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccccCCCCChHHHHH-HHH-------HHHH----HHHHcCCc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELESGNAGEPAKLIR-QRY-------REAA----DIIKKGKM 221 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s~~~Ge~~~~ir-~~f-------~~A~----~~~~~~~p 221 (473)
+..+||+||||||||++|+++++.+. .+|+.++++.+.. ..+. .+| ..+. ..+....+
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~-------~~~~~~l~g~~~~~~~g~~~~~~~~l~~a~~ 101 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNE-------NLLDSELFGHEAGAFTGAQKRHPGRFERADG 101 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCH-------HHHHHHHHCCC---------CCCCHHHHTTT
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCCh-------hHHHHHhcCCcccccccccccccchhhhcCC
Confidence 46799999999999999999999875 6899999886531 1111 111 1110 01113346
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC-------CCCccccc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF-------STLYAPLI 294 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~-------~~Ld~aLl 294 (473)
.+|||||+|.+... +...|+.++++.+...+++. .....++.||+|||.. ..+.++|.
T Consensus 102 ~~l~lDEi~~l~~~-------------~q~~Ll~~l~~~~~~~~g~~--~~~~~~~~iI~atn~~~~~~~~~~~~~~~L~ 166 (265)
T 2bjv_A 102 GTLFLDELATAPMM-------------VQEKLLRVIEYGELERVGGS--QPLQVNVRLVCATNADLPAMVNEGTFRADLL 166 (265)
T ss_dssp SEEEEESGGGSCHH-------------HHHHHHHHHHHCEECCCCC----CEECCCEEEEEESSCHHHHHHHTSSCHHHH
T ss_pred cEEEEechHhcCHH-------------HHHHHHHHHHhCCeecCCCc--ccccCCeEEEEecCcCHHHHHHcCCccHHHH
Confidence 89999999977432 23445555553221111111 1123568899999984 24778888
Q ss_pred cCCCceE-EEecCCHHHH----HHHHHhhcCC----------CCCCHHHHHHHHh
Q 011983 295 RDGRMEK-FYWAPTREDR----IGVCSGIFRT----------DNVPKEDIVKLVD 334 (473)
Q Consensus 295 R~GRfd~-~i~~P~~eeR----~~Il~~~l~~----------~~v~~~~l~~l~~ 334 (473)
+ ||.. .+.+|...+| ..+++.++.. ..++.+.+..+..
T Consensus 167 ~--Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~ 219 (265)
T 2bjv_A 167 D--ALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLN 219 (265)
T ss_dssp H--HHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHH
T ss_pred H--hhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHh
Confidence 8 8864 4557776554 3344433321 1456666666653
No 78
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.20 E-value=1.1e-10 Score=117.71 Aligned_cols=143 Identities=15% Similarity=0.215 Sum_probs=92.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC-----CCcEEecccccccCCCCChHHHHHHHHHHHHHHHH--cCCceEEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG-----INPIMMSAGELESGNAGEPAKLIRQRYREAADIIK--KGKMCCLFIN 227 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg-----~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~--~~~p~ILfID 227 (473)
+.|. +|||||||||||++++++|+.+. ..++.++.++.. | ...++........... ...+.|++||
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~----~--~~~ir~~i~~~~~~~~~~~~~~~viiiD 117 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR----G--IDVVRNQIKDFASTRQIFSKGFKLIILD 117 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC----S--HHHHHTHHHHHHHBCCSSSCSCEEEEET
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc----c--HHHHHHHHHHHHhhcccCCCCceEEEEe
Confidence 4455 99999999999999999999963 234555554321 2 2344444433220000 1247899999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEe-cC
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYW-AP 306 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~-~P 306 (473)
|+|.+... ....|+.+++ +....+.+|++||.+..+.+++++ |+..+.+ .+
T Consensus 118 e~~~l~~~-------------~~~~L~~~le-------------~~~~~~~~il~~n~~~~i~~~i~s--R~~~~~~~~l 169 (340)
T 1sxj_C 118 EADAMTNA-------------AQNALRRVIE-------------RYTKNTRFCVLANYAHKLTPALLS--QCTRFRFQPL 169 (340)
T ss_dssp TGGGSCHH-------------HHHHHHHHHH-------------HTTTTEEEEEEESCGGGSCHHHHT--TSEEEECCCC
T ss_pred CCCCCCHH-------------HHHHHHHHHh-------------cCCCCeEEEEEecCccccchhHHh--hceeEeccCC
Confidence 99977421 1234555555 334567788899999999999999 8875444 46
Q ss_pred CHHHHHHHHHhhcCCC--CCCHHHHHHH
Q 011983 307 TREDRIGVCSGIFRTD--NVPKEDIVKL 332 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~~--~v~~~~l~~l 332 (473)
+.++..+++..++... .++.+.+..+
T Consensus 170 ~~~~~~~~l~~~~~~~~~~i~~~~~~~i 197 (340)
T 1sxj_C 170 PQEAIERRIANVLVHEKLKLSPNAEKAL 197 (340)
T ss_dssp CHHHHHHHHHHHHHTTTCCBCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 7888888888777543 3554443333
No 79
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.19 E-value=2.7e-12 Score=114.04 Aligned_cols=90 Identities=12% Similarity=0.033 Sum_probs=65.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 236 (473)
+..+|||||||||||++|+++++..+ +|+.++++.+...+ ++..|..| .+.+|||||+|.+...
T Consensus 27 ~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~-------~~~~~~~a-------~~~~l~lDei~~l~~~- 90 (143)
T 3co5_A 27 TSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDM-------PMELLQKA-------EGGVLYVGDIAQYSRN- 90 (143)
T ss_dssp SSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHC-------HHHHHHHT-------TTSEEEEEECTTCCHH-
T ss_pred CCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHh-------hhhHHHhC-------CCCeEEEeChHHCCHH-
Confidence 45699999999999999999999988 89999988765322 44555533 3789999999987432
Q ss_pred CCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 237 ~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
....|+.++++ ....++.+|+|||..
T Consensus 91 ------------~q~~Ll~~l~~------------~~~~~~~iI~~tn~~ 116 (143)
T 3co5_A 91 ------------IQTGITFIIGK------------AERCRVRVIASCSYA 116 (143)
T ss_dssp ------------HHHHHHHHHHH------------HTTTTCEEEEEEEEC
T ss_pred ------------HHHHHHHHHHh------------CCCCCEEEEEecCCC
Confidence 22345554441 124568899999865
No 80
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.18 E-value=2e-11 Score=150.66 Aligned_cols=143 Identities=14% Similarity=0.162 Sum_probs=95.0
Q ss_pred CcEEEEEcCCCCcHHHHHHH-HHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH-----------cCCceEE
Q 011983 157 PLILGIWGGKGQGKSFQCEL-VFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK-----------KGKMCCL 224 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAka-IA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~-----------~~~p~IL 224 (473)
.+++||+||||||||++|+. +++..+..++.++.+...+ ...+...++...+..+ .++++||
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts------~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~Vl 1340 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT------TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVL 1340 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC------HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC------HHHHHHHHHHHhhhccccCCccccCCCCCceEEE
Confidence 47899999999999999955 4444466777777664432 3444455443311000 1345799
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCC-----CCCceEEEecCCCC-----CCccccc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEE-----NPRVPIIVTGNDFS-----TLYAPLI 294 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~-----~~~V~VIaTTN~~~-----~Ld~aLl 294 (473)
||||+|.....+.+ + +.+...|.++++ .+|+|.... ..++.+|+|+|.+. .|+++|+
T Consensus 1341 FiDEinmp~~d~yg-~------q~~lelLRq~le------~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rll 1407 (2695)
T 4akg_A 1341 FCDEINLPKLDKYG-S------QNVVLFLRQLME------KQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFT 1407 (2695)
T ss_dssp EEETTTCSCCCSSS-C------CHHHHHHHHHHH------TSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccccccccccC-c------hhHHHHHHHHHh------cCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhh
Confidence 99999965433322 2 245566777666 344433211 14688999999994 8999999
Q ss_pred cCCCceEEEe-cCCHHHHHHHHHhhcC
Q 011983 295 RDGRMEKFYW-APTREDRIGVCSGIFR 320 (473)
Q Consensus 295 R~GRfd~~i~-~P~~eeR~~Il~~~l~ 320 (473)
| ||..+.. .|+.+++..|+..++.
T Consensus 1408 R--rf~vi~i~~P~~~~l~~I~~~il~ 1432 (2695)
T 4akg_A 1408 R--HAAILYLGYPSGKSLSQIYEIYYK 1432 (2695)
T ss_dssp T--TEEEEECCCCTTTHHHHHHHHHHH
T ss_pred h--eeeEEEeCCCCHHHHHHHHHHHHH
Confidence 9 9944333 6999999999987764
No 81
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.18 E-value=5e-12 Score=137.71 Aligned_cols=139 Identities=17% Similarity=0.204 Sum_probs=88.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe----cccccccCCCCChHH----HHHHHHHHHHHHHHcCCceEEEecCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMM----SAGELESGNAGEPAK----LIRQRYREAADIIKKGKMCCLFINDL 229 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v----s~s~l~s~~~Ge~~~----~ir~~f~~A~~~~~~~~p~ILfIDEi 229 (473)
..+||+||||||||++|+++|+.++..++.. ++..+.......... .-...+..| ..+|||||||
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~~~~~~g~~~~~~G~l~~A-------~~gil~IDEi 400 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVVREKGTGEYYLEAGALVLA-------DGGIAVIDEI 400 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECSSGGGTSSCSEEECHHHHH-------SSSEECCTTT
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceeeeccccccccccCCeeEec-------CCCcEEeehh
Confidence 3799999999999999999999987554432 222222211111000 000112222 3689999999
Q ss_pred CCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCC--CCcccCCCCCceEEEecCCCC-------------CCccccc
Q 011983 230 DAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLP--GMYNQEENPRVPIIVTGNDFS-------------TLYAPLI 294 (473)
Q Consensus 230 Dal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~--g~~~~~~~~~V~VIaTTN~~~-------------~Ld~aLl 294 (473)
|.+... +...|++++++.+ +.+. |. ......++.||+|||... .|+++|+
T Consensus 401 d~l~~~-------------~q~~Ll~~le~~~-i~i~~~g~-~~~~~~~~~vIaatNp~~G~~~~~~~~~~ni~l~~aLl 465 (595)
T 3f9v_A 401 DKMRDE-------------DRVAIHEAMEQQT-VSIAKAGI-VAKLNARAAVIAAGNPKFGRYISERPVSDNINLPPTIL 465 (595)
T ss_dssp TCCCSH-------------HHHHHHHHHHSSS-EEEESSSS-EEEECCCCEEEEEECCTTCCSCTTSCSCTTTCSCSSSG
T ss_pred hhCCHh-------------HhhhhHHHHhCCE-EEEecCCc-EEEecCceEEEEEcCCcCCccCcccCchhccCCCHHHH
Confidence 987432 3356677666322 1111 21 112346788999999986 8999999
Q ss_pred cCCCceEEEe---cCCHHHHHHHHHhhcCC
Q 011983 295 RDGRMEKFYW---APTREDRIGVCSGIFRT 321 (473)
Q Consensus 295 R~GRfd~~i~---~P~~eeR~~Il~~~l~~ 321 (473)
+ |||..+. .|+.+ ...|.++++..
T Consensus 466 ~--RFDl~~~~~~~~~~e-~~~i~~~il~~ 492 (595)
T 3f9v_A 466 S--RFDLIFILKDQPGEQ-DRELANYILDV 492 (595)
T ss_dssp G--GCSCCEEECCTTHHH-HHHHHHHHHTT
T ss_pred h--hCeEEEEeCCCCCHH-HHHHHHHHHHH
Confidence 9 9986555 47777 88888877754
No 82
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.15 E-value=1.7e-11 Score=130.76 Aligned_cols=139 Identities=14% Similarity=0.124 Sum_probs=81.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecc-----cccccCCCCChHHHHHHHHHHHHHHHHcC---CceEEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSA-----GELESGNAGEPAKLIRQRYREAADIIKKG---KMCCLFIN 227 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~-----s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~---~p~ILfID 227 (473)
..+||+||||||||++|+++|+.++. +|..+.+ +++.+.+.+..... ...|..+. .+ .++|||||
T Consensus 42 ~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~~~~~-~g~~~~~~----~g~l~~~~IL~ID 116 (500)
T 3nbx_X 42 ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQALKD-EGRYERLT----SGYLPEAEIVFLD 116 (500)
T ss_dssp CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC-----------CBCC----TTSGGGCSEEEEE
T ss_pred CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHHHHhh-chhHHhhh----ccCCCcceeeeHH
Confidence 47999999999999999999998853 3333332 23333222221110 11222111 22 46799999
Q ss_pred CCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCC---CccccccCCCceEEEe
Q 011983 228 DLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFST---LYAPLIRDGRMEKFYW 304 (473)
Q Consensus 228 EiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~---Ld~aLlR~GRfd~~i~ 304 (473)
||+.+.+ .+...|++++++ ..+.++|.. ...+..++|+|||.+.. +.+++++ ||...+.
T Consensus 117 EI~r~~~-------------~~q~~LL~~lee-~~v~i~G~~--~~~~~~~iI~ATN~lpe~~~~~~aLld--RF~~~i~ 178 (500)
T 3nbx_X 117 EIWKAGP-------------AILNTLLTAINE-RQFRNGAHV--EKIPMRLLVAASNELPEADSSLEALYD--RMLIRLW 178 (500)
T ss_dssp SGGGCCH-------------HHHHHHHHHHHS-SEEECSSSE--EECCCCEEEEEESSCCCTTCTTHHHHT--TCCEEEE
T ss_pred hHhhhcH-------------HHHHHHHHHHHH-HhccCCCCc--CCcchhhhhhccccCCCccccHHHHHH--HHHHHHH
Confidence 9975422 344667777763 333444441 12233356888886322 3358999 9988788
Q ss_pred c--CCH-HHHHHHHHhhc
Q 011983 305 A--PTR-EDRIGVCSGIF 319 (473)
Q Consensus 305 ~--P~~-eeR~~Il~~~l 319 (473)
+ |+. +++..|++...
T Consensus 179 v~~p~~~ee~~~IL~~~~ 196 (500)
T 3nbx_X 179 LDKVQDKANFRSMLTSQQ 196 (500)
T ss_dssp CCSCCCHHHHHHHHTCCC
T ss_pred HHHhhhhhhHHHHHhccc
Confidence 4 664 78899998655
No 83
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.12 E-value=2.6e-10 Score=114.33 Aligned_cols=129 Identities=7% Similarity=-0.062 Sum_probs=91.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh------CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM------GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l------g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
+..+|||||||+|||++|+++|+.+ ...++.++++. . ..+...+|++.+.+...--.....|+||||+|
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~---~--~~~id~ir~li~~~~~~p~~~~~kvviIdead 92 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEG---E--NIGIDDIRTIKDFLNYSPELYTRKYVIVHDCE 92 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSS---S--CBCHHHHHHHHHHHTSCCSSSSSEEEEETTGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCc---C--CCCHHHHHHHHHHHhhccccCCceEEEeccHH
Confidence 6689999999999999999999974 34566666541 0 12345677877766311002335799999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEecCCHHH
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPTRED 310 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P~~ee 310 (473)
.+-.. ..+.|+..++ ++.+++.+|++||.++.|.+++++ | -..+..|+.++
T Consensus 93 ~lt~~-------------a~naLLk~LE-------------ep~~~t~fIl~t~~~~kl~~tI~S--R-~~~f~~l~~~~ 143 (305)
T 2gno_A 93 RMTQQ-------------AANAFLKALE-------------EPPEYAVIVLNTRRWHYLLPTIKS--R-VFRVVVNVPKE 143 (305)
T ss_dssp GBCHH-------------HHHHTHHHHH-------------SCCTTEEEEEEESCGGGSCHHHHT--T-SEEEECCCCHH
T ss_pred HhCHH-------------HHHHHHHHHh-------------CCCCCeEEEEEECChHhChHHHHc--e-eEeCCCCCHHH
Confidence 87321 2345666565 556788888889999999999999 7 33333678888
Q ss_pred HHHHHHhhc
Q 011983 311 RIGVCSGIF 319 (473)
Q Consensus 311 R~~Il~~~l 319 (473)
..+.++..+
T Consensus 144 i~~~L~~~~ 152 (305)
T 2gno_A 144 FRDLVKEKI 152 (305)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 888888776
No 84
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.06 E-value=9.1e-10 Score=100.52 Aligned_cols=86 Identities=16% Similarity=0.193 Sum_probs=55.9
Q ss_pred HHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecccccccCCCCChHHHHHHHHHHHH-
Q 011983 139 KVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAGELESGNAGEPAKLIRQRYREAA- 213 (473)
Q Consensus 139 ~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~- 213 (473)
+.....++.+..........+++|+||||||||++++++++.+ |..++.++..++.. .++..+....
T Consensus 20 ~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~~~ 91 (180)
T 3ec2_A 20 NRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIF--------RLKHLMDEGKD 91 (180)
T ss_dssp HHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHH--------HHHHHHHHTCC
T ss_pred HHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHH--------HHHHHhcCchH
Confidence 3445556666655555567899999999999999999999986 66666676655542 1222221100
Q ss_pred -HHH-HcCCceEEEecCCCCc
Q 011983 214 -DII-KKGKMCCLFINDLDAG 232 (473)
Q Consensus 214 -~~~-~~~~p~ILfIDEiDal 232 (473)
..+ .-..|.+|+|||++..
T Consensus 92 ~~~~~~~~~~~llilDE~~~~ 112 (180)
T 3ec2_A 92 TKFLKTVLNSPVLVLDDLGSE 112 (180)
T ss_dssp SHHHHHHHTCSEEEEETCSSS
T ss_pred HHHHHHhcCCCEEEEeCCCCC
Confidence 001 1236899999999854
No 85
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=99.00 E-value=2.1e-10 Score=136.51 Aligned_cols=114 Identities=15% Similarity=0.175 Sum_probs=82.3
Q ss_pred CCcE--EEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccc------------cCCCCC----hHHHHHHHHHHHHH
Q 011983 156 VPLI--LGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELE------------SGNAGE----PAKLIRQRYREAAD 214 (473)
Q Consensus 156 ~p~g--lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~------------s~~~Ge----~~~~ir~~f~~A~~ 214 (473)
+|+| +|||||||||||+||++++.+. |-+.+.|+..++. ++|+++ +++.++.+|..|+
T Consensus 1079 ~p~g~~~l~~G~~g~GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar- 1157 (1706)
T 3cmw_A 1079 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR- 1157 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH-
T ss_pred CCCCCEEEEEcCCCCChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHH-
Confidence 5555 9999999999999999999986 4455555555433 677788 8999999998887
Q ss_pred HHHcCCceEEEecCCCCccccCC---CCC--ccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 215 IIKKGKMCCLFINDLDAGAGRMG---GTT--QYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~~r~---~~~--~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
...||+||+|++|+++++++ ... +.....+.+++.|.++. +. ....+|.|| +||+.
T Consensus 1158 ---~~~~~~i~~d~~~al~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~---------~~---~~~~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1158 ---SGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLA---------GN---LKQSNTLLI-FINQI 1218 (1706)
T ss_dssp ---HTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHH---------HH---HHHTTCEEE-EEECE
T ss_pred ---hcCCeEEEeCchHhcCcccccccccccccccHHHHHHHHHHHHHH---------hh---hccCCeEEE-Eeccc
Confidence 88999999999999998732 111 11333455777666533 22 335677777 77765
No 86
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.88 E-value=1.7e-09 Score=109.03 Aligned_cols=121 Identities=16% Similarity=0.108 Sum_probs=69.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC--cEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~--~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
..+...++|+||||||||+||..+|.+.|.+ |+.....+..+.+....+..++.+++... +.. +||||+++.
T Consensus 120 i~~gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~----~~~--LLVIDsI~a 193 (331)
T 2vhj_A 120 RYASGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAML----QHR--VIVIDSLKN 193 (331)
T ss_dssp EEESEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHH----HCS--EEEEECCTT
T ss_pred CCCCcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHh----hCC--EEEEecccc
Confidence 4445678999999999999999999886655 44442244444444445555544444332 444 999999999
Q ss_pred ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCcccc
Q 011983 232 GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPL 293 (473)
Q Consensus 232 l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aL 293 (473)
+.....+........+.+.+.|..|.. + ....++.+|+++| +...++++
T Consensus 194 L~~~~~~~s~~G~v~~~lrqlL~~L~~----------~--~k~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 194 VIGAAGGNTTSGGISRGAFDLLSDIGA----------M--AASRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp TC-----------CCHHHHHHHHHHHH----------H--HHHHTCEEEEECC-CSSCSSSH
T ss_pred cccccccccccchHHHHHHHHHHHHHH----------H--HhhCCCEEEEEeC-CcccchhH
Confidence 865432211111112334444444332 0 1134677888888 55666664
No 87
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=98.83 E-value=1.3e-08 Score=103.62 Aligned_cols=158 Identities=9% Similarity=0.107 Sum_probs=91.6
Q ss_pred CCcEEEE--EcCCCCcHHHHHHHHHHHh---------CCCcEEecccccccC----------------CCCChHHHHHHH
Q 011983 156 VPLILGI--WGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG----------------NAGEPAKLIRQR 208 (473)
Q Consensus 156 ~p~glLL--~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s~----------------~~Ge~~~~ir~~ 208 (473)
.+..++| +||||+|||++++.+++++ +..++.+++....+. ..|.+.. .+
T Consensus 49 ~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~---~~ 125 (412)
T 1w5s_A 49 SDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFNAPNLYTILSLIVRQTGYPIQVRGAPAL---DI 125 (412)
T ss_dssp CCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGGCCSHHHHHHHHHHHHTCCCCCTTCCHH---HH
T ss_pred CCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCHH---HH
Confidence 4678999 9999999999999999886 556677775321100 0111111 12
Q ss_pred HHHHHHHHH-cCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCC--CCceEEEecCC
Q 011983 209 YREAADIIK-KGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEEN--PRVPIIVTGND 285 (473)
Q Consensus 209 f~~A~~~~~-~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~--~~V~VIaTTN~ 285 (473)
+......+. ..+|.||+|||+|.+...... ...+...|+.++.+ +. ... .++.||+|||.
T Consensus 126 ~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~-------~~~~l~~l~~~~~~-----~~-----~~~~~~~v~lI~~~~~ 188 (412)
T 1w5s_A 126 LKALVDNLYVENHYLLVILDEFQSMLSSPRI-------AAEDLYTLLRVHEE-----IP-----SRDGVNRIGFLLVASD 188 (412)
T ss_dssp HHHHHHHHHHHTCEEEEEEESTHHHHSCTTS-------CHHHHHHHHTHHHH-----SC-----CTTSCCBEEEEEEEEE
T ss_pred HHHHHHHHHhcCCeEEEEEeCHHHHhhccCc-------chHHHHHHHHHHHh-----cc-----cCCCCceEEEEEEecc
Confidence 222222222 467999999999988543110 11222333333330 00 113 67889999987
Q ss_pred CC---CCc---cccccCCCceEEEec--CCHHHHHHHHHhhcC----CCCCCHHHHHHHHhc
Q 011983 286 FS---TLY---APLIRDGRMEKFYWA--PTREDRIGVCSGIFR----TDNVPKEDIVKLVDT 335 (473)
Q Consensus 286 ~~---~Ld---~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~----~~~v~~~~l~~l~~~ 335 (473)
++ .++ +.+.+ |+...+.+ ++.++..+++...+. ...++.+.+..+...
T Consensus 189 ~~~~~~l~~~~~~~~~--~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~ 248 (412)
T 1w5s_A 189 VRALSYMREKIPQVES--QIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDV 248 (412)
T ss_dssp THHHHHHHHHCHHHHT--TCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHH
T ss_pred ccHHHHHhhhcchhhh--hcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHH
Confidence 65 334 55666 55444554 688999999975543 234566655555444
No 88
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.82 E-value=2.2e-08 Score=92.72 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=45.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCCh-HHHHHHHHHHHHHHHHcCCceEEEecCCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEP-AKLIRQRYREAADIIKKGKMCCLFINDLDA 231 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~-~~~ir~~f~~A~~~~~~~~p~ILfIDEiDa 231 (473)
.|.+++||||||||||++|+++++++ +.+++.++++++...+.... ...+...+... ..+.+|+|||++.
T Consensus 53 ~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~lilDei~~ 126 (202)
T 2w58_A 53 KMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELKHSLQDQTMNEKLDYI------KKVPVLMLDDLGA 126 (202)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHHHC---CCCHHHHHHH------HHSSEEEEEEECC
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHHHHhccchHHHHHHHh------cCCCEEEEcCCCC
Confidence 45899999999999999999999987 66777777765432110000 00011112211 1246999999976
Q ss_pred cc
Q 011983 232 GA 233 (473)
Q Consensus 232 l~ 233 (473)
..
T Consensus 127 ~~ 128 (202)
T 2w58_A 127 EA 128 (202)
T ss_dssp C-
T ss_pred Cc
Confidence 53
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.78 E-value=7.8e-09 Score=92.66 Aligned_cols=59 Identities=20% Similarity=0.282 Sum_probs=46.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
....++|+||+|+|||+|++++++.+ |...+.++..++... +. ..+|.+|+|||++.+
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~---------------~~----~~~~~lLilDE~~~~ 95 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLT---------------DA----AFEAEYLAVDQVEKL 95 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCC---------------GG----GGGCSEEEEESTTCC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHH---------------HH----HhCCCEEEEeCcccc
Confidence 45689999999999999999999987 777888887776532 11 235899999999875
Q ss_pred c
Q 011983 233 A 233 (473)
Q Consensus 233 ~ 233 (473)
.
T Consensus 96 ~ 96 (149)
T 2kjq_A 96 G 96 (149)
T ss_dssp C
T ss_pred C
Confidence 3
No 90
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.75 E-value=1.3e-08 Score=95.87 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=77.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH--------hC-CCcEEecccccccCCC----------CChHH--HHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK--------MG-INPIMMSAGELESGNA----------GEPAK--LIRQRYREAAD 214 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~--------lg-~~~i~vs~s~l~s~~~----------Ge~~~--~ir~~f~~A~~ 214 (473)
.+.+.|++|+||+|||++|...+.. .| .+++..+..+|...+. ..... ....+++.+.
T Consensus 4 ~~mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~- 82 (199)
T 2r2a_A 4 MAEICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIK- 82 (199)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTT-
T ss_pred ceeEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhh-
Confidence 4678999999999999999886544 34 5555555555543221 11100 0011222110
Q ss_pred HHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccc
Q 011983 215 IIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLI 294 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLl 294 (473)
.....++||+|||++.+++.+..... .. ..|.++.. ......-||++|+.++.|+.+|+
T Consensus 83 -~~~~~~~vliIDEAq~l~~~~~~~~e---~~----rll~~l~~-------------~r~~~~~iil~tq~~~~l~~~lr 141 (199)
T 2r2a_A 83 -KPENIGSIVIVDEAQDVWPARSAGSK---IP----ENVQWLNT-------------HRHQGIDIFVLTQGPKLLDQNLR 141 (199)
T ss_dssp -SGGGTTCEEEETTGGGTSBCCCTTCC---CC----HHHHGGGG-------------TTTTTCEEEEEESCGGGBCHHHH
T ss_pred -ccccCceEEEEEChhhhccCccccch---hH----HHHHHHHh-------------cCcCCeEEEEECCCHHHHhHHHH
Confidence 01566899999999999765421111 11 22222211 23456678889999999999998
Q ss_pred cCCCceEEEec
Q 011983 295 RDGRMEKFYWA 305 (473)
Q Consensus 295 R~GRfd~~i~~ 305 (473)
+ |++..+.+
T Consensus 142 ~--ri~~~~~l 150 (199)
T 2r2a_A 142 T--LVRKHYHI 150 (199)
T ss_dssp T--TEEEEEEE
T ss_pred H--HhheEEEE
Confidence 8 99998884
No 91
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.66 E-value=4e-08 Score=93.16 Aligned_cols=126 Identities=16% Similarity=0.131 Sum_probs=68.1
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
.++.++. ++....++|||||||||||++|.++|+.+.-..+....+. + .. .+.. -....|
T Consensus 47 ~l~~~~~--~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~--s-------~f---~l~~------l~~~kI 106 (212)
T 1tue_A 47 ALKSFLK--GTPKKNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST--S-------HF---WLEP------LTDTKV 106 (212)
T ss_dssp HHHHHHH--TCTTCSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS--S-------CG---GGGG------GTTCSS
T ss_pred HHHHHHh--cCCcccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc--c-------hh---hhcc------cCCCCE
Confidence 3444443 2333468999999999999999999999754332211110 0 00 0111 122459
Q ss_pred EEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc-CCCCCceEEEecCC---CCCCccccccCCCc
Q 011983 224 LFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-EENPRVPIIVTGND---FSTLYAPLIRDGRM 299 (473)
Q Consensus 224 LfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~-~~~~~V~VIaTTN~---~~~Ld~aLlR~GRf 299 (473)
|+|||+|.-. -+.+...+.++++. ..+.+|-.+.. ......|+|+|||. .+...+.|.+ |+
T Consensus 107 iiLDEad~~~------------~~~~d~~lrn~ldG-~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~S--Ri 171 (212)
T 1tue_A 107 AMLDDATTTC------------WTYFDTYMRNALDG-NPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLES--RI 171 (212)
T ss_dssp EEEEEECHHH------------HHHHHHHCHHHHHT-CCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHT--SC
T ss_pred EEEECCCchh------------HHHHHHHHHHHhCC-CcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhh--hE
Confidence 9999998321 12233455555551 23333322111 11235699999997 3334456777 77
Q ss_pred eEEEe
Q 011983 300 EKFYW 304 (473)
Q Consensus 300 d~~i~ 304 (473)
-.+-+
T Consensus 172 ~~f~F 176 (212)
T 1tue_A 172 TVFEF 176 (212)
T ss_dssp EEEEC
T ss_pred EEEEc
Confidence 65554
No 92
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.65 E-value=4.6e-08 Score=100.80 Aligned_cols=118 Identities=9% Similarity=0.081 Sum_probs=75.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAG 232 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal 232 (473)
+++++..++|+||||+|||+++++++...+..++.+..+. .. . .|.-. ...+..++|+||++.+
T Consensus 165 ~i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~-------~~---~--~~~lg----~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 165 NIPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL-------DR---L--NFELG----VAIDQFLVVFEDVKGT 228 (377)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT-------TT---H--HHHHG----GGTTCSCEEETTCCCS
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc-------hh---H--HHHHH----HhcchhHHHHHHHHHH
Confidence 4567789999999999999999999998776554432221 10 0 11101 1234577899999998
Q ss_pred cc-cCCCCCccchhhHHH-HHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceEEEecCC
Q 011983 233 AG-RMGGTTQYTVNNQMV-NATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEKFYWAPT 307 (473)
Q Consensus 233 ~~-~r~~~~~~~~~~~~v-~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~~i~~P~ 307 (473)
.. .+..... . ..+ ...+.+.++ +.+.|+++||+++.+ ++++||||++..++.+.
T Consensus 229 ~~~~r~l~~~-~---~~~~~~~l~~~ld----------------G~v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 229 GGESRDLPSG-Q---GINNLDNLRDYLD----------------GSVKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp TTTTTTCCCC-S---HHHHHHTTHHHHH----------------CSSCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHhhcccc-C---cchHHHHHHHHhc----------------CCCeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 75 2221111 0 111 112222222 346789999999999 79999999999888544
No 93
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.63 E-value=3.1e-08 Score=99.13 Aligned_cols=83 Identities=12% Similarity=0.195 Sum_probs=49.0
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC----CCcEEecccccccCCCCC-hHHHHHHHHHHHHHHHHc
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELESGNAGE-PAKLIRQRYREAADIIKK 218 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg----~~~i~vs~s~l~s~~~Ge-~~~~ir~~f~~A~~~~~~ 218 (473)
.++.++.......+.+++||||||||||+||.++|+++. .+++.++.+++...+... ....+...+.. -
T Consensus 139 ~~~~~i~~~~~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l~~~~~~~~~~~~~~~------~ 212 (308)
T 2qgz_A 139 AILDFVEQYPSAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDVKNAISNGSVKEEIDA------V 212 (308)
T ss_dssp HHHHHHHHCSCSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHHHCCCC----CCTTHH------H
T ss_pred HHHHHHHhccccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHHHHHhccchHHHHHHH------h
Confidence 444454432222468999999999999999999998754 677777776554311110 00001111111 1
Q ss_pred CCceEEEecCCCCc
Q 011983 219 GKMCCLFINDLDAG 232 (473)
Q Consensus 219 ~~p~ILfIDEiDal 232 (473)
..+.+|||||++..
T Consensus 213 ~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 213 KNVPVLILDDIGAE 226 (308)
T ss_dssp HTSSEEEEETCCC-
T ss_pred cCCCEEEEcCCCCC
Confidence 23569999999755
No 94
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=98.55 E-value=1.7e-07 Score=101.94 Aligned_cols=102 Identities=15% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCc---------ccCCCCCceEEEecCCC--C
Q 011983 219 GKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMY---------NQEENPRVPIIVTGNDF--S 287 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~---------~~~~~~~V~VIaTTN~~--~ 287 (473)
..+.+|||||+|.+.. .+...|+.++++.+ +...|.. ......++.||+|||+. +
T Consensus 200 a~~gvL~LDEi~~l~~-------------~~q~~Ll~~Le~~~-~~~~g~~~~~~~~~l~~~~~p~~~~vI~atn~~~~~ 265 (604)
T 3k1j_A 200 AHKGVLFIDEIATLSL-------------KMQQSLLTAMQEKK-FPITGQSEMSSGAMVRTEPVPCDFVLVAAGNLDTVD 265 (604)
T ss_dssp TTTSEEEETTGGGSCH-------------HHHHHHHHHHHHSE-ECCBCSCTTSGGGGCBCSCEECCCEEEEEECHHHHH
T ss_pred cCCCEEEEechhhCCH-------------HHHHHHHHHHHcCc-EEecccccccccccCCCCccceeEEEEEecCHHHHh
Confidence 3567999999998621 23345555555222 1111110 00113467899999987 6
Q ss_pred CCccccccCCCce---EEEecC-----CHHHHHHHHHhhcC-------CCCCCHHHHHHHHhcC
Q 011983 288 TLYAPLIRDGRME---KFYWAP-----TREDRIGVCSGIFR-------TDNVPKEDIVKLVDTF 336 (473)
Q Consensus 288 ~Ld~aLlR~GRfd---~~i~~P-----~~eeR~~Il~~~l~-------~~~v~~~~l~~l~~~~ 336 (473)
.++++|++ ||+ ..+.++ ..+....+++.+.. ...++.+.+..+...+
T Consensus 266 ~l~~~l~~--R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~ 327 (604)
T 3k1j_A 266 KMHPALRS--RIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREA 327 (604)
T ss_dssp HSCHHHHH--HHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHH
T ss_pred hcCHHHHH--HhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHH
Confidence 89999999 986 444542 35555555543321 1356777776666543
No 95
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.45 E-value=5.5e-07 Score=111.63 Aligned_cols=141 Identities=10% Similarity=0.086 Sum_probs=94.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRM 236 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r 236 (473)
-.+++++||||||||.+++.+|+.+|.+++.+++++-.. ...+..+|..+. ..++.++|||++.+-..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld------~~~lg~~~~g~~-----~~Gaw~~~DE~nr~~~e- 712 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFD------YQVLSRLLVGIT-----QIGAWGCFDEFNRLDEK- 712 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCC------HHHHHHHHHHHH-----HHTCEEEEETTTSSCHH-
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCC------hhHhhHHHHHHH-----hcCCEeeehhhhhcChH-
Confidence 357899999999999999999999999999999986553 455677777663 33689999999976432
Q ss_pred CCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011983 237 GGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 311 (473)
Q Consensus 237 ~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 311 (473)
.. ++-.+.+...+..+.+....+.+.|... .-.++..|++|.| ....|+++|++ ||-.+.. .|+.+..
T Consensus 713 ---vL-s~l~~~l~~i~~al~~~~~~i~~~g~~i-~l~~~~~vfiT~NPgy~g~~eLP~~Lk~--~Fr~v~m~~Pd~~~i 785 (2695)
T 4akg_A 713 ---VL-SAVSANIQQIQNGLQVGKSHITLLEEET-PLSPHTAVFITLNPGYNGRSELPENLKK--SFREFSMKSPQSGTI 785 (2695)
T ss_dssp ---HH-HHHHHHHHHHHHHHHHTCSEEECSSSEE-ECCTTCEEEEEECCCSSSSCCCCHHHHT--TEEEEECCCCCHHHH
T ss_pred ---HH-HHHHHHHHHHHHHHHcCCcEEeeCCcEE-ecCCCceEEEEeCCCccCcccccHHHHh--heEEEEeeCCCHHHH
Confidence 01 1111111111122223333445555411 2345677888988 55679999999 8854333 6999988
Q ss_pred HHHHH
Q 011983 312 IGVCS 316 (473)
Q Consensus 312 ~~Il~ 316 (473)
.+|+-
T Consensus 786 ~ei~l 790 (2695)
T 4akg_A 786 AEMIL 790 (2695)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88853
No 96
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=98.38 E-value=3.8e-07 Score=110.11 Aligned_cols=102 Identities=15% Similarity=0.205 Sum_probs=66.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc----C------------CCCChHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----G------------NAGEPAKLIRQRYREAA 213 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s----~------------~~Ge~~~~ir~~f~~A~ 213 (473)
++.++.+++||||||||||+||.+++.+. |.....++..+... . .+...++.++.+++.+
T Consensus 1423 Gi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lv- 1501 (2050)
T 3cmu_A 1423 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALA- 1501 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHH-
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHH-
Confidence 57789999999999999999999998874 44555555543321 1 1223445555555544
Q ss_pred HHHHcCCceEEEecCCCCccccC---CCCCccch--hhHHHHHHHHHhhc
Q 011983 214 DIIKKGKMCCLFINDLDAGAGRM---GGTTQYTV--NNQMVNATLMNIAD 258 (473)
Q Consensus 214 ~~~~~~~p~ILfIDEiDal~~~r---~~~~~~~~--~~~~v~~~Ll~lld 258 (473)
+..+|++|||||++++.+.. +......+ ..+.+.+.|.+|..
T Consensus 1502 ---r~~~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~ 1548 (2050)
T 3cmu_A 1502 ---RSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAG 1548 (2050)
T ss_dssp ---HHTCCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHH
T ss_pred ---hcCCCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHH
Confidence 48899999999999998742 11111122 34555666666554
No 97
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.37 E-value=2.9e-06 Score=83.90 Aligned_cols=154 Identities=19% Similarity=0.203 Sum_probs=85.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc------------c---CCCCC---------------------h
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE------------S---GNAGE---------------------P 201 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~------------s---~~~Ge---------------------~ 201 (473)
..++|+||+|+|||++++.++++.+ .+.+++.... . ...+. .
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 109 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPR 109 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGG
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccc
Confidence 5899999999999999999999986 4455443211 0 00000 0
Q ss_pred HHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEE
Q 011983 202 AKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIV 281 (473)
Q Consensus 202 ~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIa 281 (473)
...+..+++.....++...|.+|+|||++.+..... .....+...|..+.+ . ..++.+|+
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~------~~~~~~~~~L~~~~~-------------~-~~~~~~il 169 (350)
T 2qen_A 110 KLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS------RGGKELLALFAYAYD-------------S-LPNLKIIL 169 (350)
T ss_dssp GCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT------TTTHHHHHHHHHHHH-------------H-CTTEEEEE
T ss_pred cchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc------cchhhHHHHHHHHHH-------------h-cCCeEEEE
Confidence 012233333333233333499999999998754100 001223344444433 1 24677888
Q ss_pred ecCCCCCC---------ccccccCCCceEEEec--CCHHHHHHHHHhhcCCC--CCCHHHHHHHHhc
Q 011983 282 TGNDFSTL---------YAPLIRDGRMEKFYWA--PTREDRIGVCSGIFRTD--NVPKEDIVKLVDT 335 (473)
Q Consensus 282 TTN~~~~L---------d~aLlR~GRfd~~i~~--P~~eeR~~Il~~~l~~~--~v~~~~l~~l~~~ 335 (473)
|+.....+ ..++. ||+...+.+ .+.++-.+++...+... .++.+.+..+...
T Consensus 170 ~g~~~~~l~~~l~~~~~~~~l~--~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~~~~~~~~i~~~ 234 (350)
T 2qen_A 170 TGSEVGLLHDFLKITDYESPLY--GRIAGEVLVKPFDKDTSVEFLKRGFREVNLDVPENEIEEAVEL 234 (350)
T ss_dssp EESSHHHHHHHHCTTCTTSTTT--TCCCEEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHH
T ss_pred ECCcHHHHHHHHhhcCCCCccc--cCccceeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 77543211 22232 366555663 58888888888766443 3555555444443
No 98
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.32 E-value=3.2e-07 Score=114.54 Aligned_cols=141 Identities=13% Similarity=0.199 Sum_probs=91.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH-hCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHH------------cCCceEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK-MGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIK------------KGKMCCL 224 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~-lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~------------~~~p~IL 224 (473)
+.+||+||||||||.+++..... .+.+++.++.+.-. +...+...++...+... .++..|+
T Consensus 1305 ~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~T------ta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~Vl 1378 (3245)
T 3vkg_A 1305 RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSAT------TPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVV 1378 (3245)
T ss_dssp CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTC------CHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEE
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCC------CHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEE
Confidence 45899999999999877654444 35566677766433 23445555542110000 1334699
Q ss_pred EecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCccc-----CCCCCceEEEecCCC-----CCCccccc
Q 011983 225 FINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQ-----EENPRVPIIVTGNDF-----STLYAPLI 294 (473)
Q Consensus 225 fIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~-----~~~~~V~VIaTTN~~-----~~Ld~aLl 294 (473)
||||++.-.....+ + |.+...|.+++|. .|+|.. ....++.+|+|.|.+ ..|++.++
T Consensus 1379 FiDDiNmp~~D~yG-t------Q~~ielLrqlld~------~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~ 1445 (3245)
T 3vkg_A 1379 FCDEINLPSTDKYG-T------QRVITFIRQMVEK------GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFL 1445 (3245)
T ss_dssp EETTTTCCCCCTTS-C------CHHHHHHHHHHHH------SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHH
T ss_pred EecccCCCCccccc-c------ccHHHHHHHHHHc------CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHH
Confidence 99999854332221 2 3566778887772 233321 123677899999987 46999999
Q ss_pred cCCCceEEEe-cCCHHHHHHHHHhhc
Q 011983 295 RDGRMEKFYW-APTREDRIGVCSGIF 319 (473)
Q Consensus 295 R~GRfd~~i~-~P~~eeR~~Il~~~l 319 (473)
| ||..+.. .|+.+....|+..++
T Consensus 1446 r--~F~vi~i~~ps~esL~~If~til 1469 (3245)
T 3vkg_A 1446 R--HAPILLVDFPSTSSLTQIYGTFN 1469 (3245)
T ss_dssp T--TCCEEECCCCCHHHHHHHHHHHH
T ss_pred h--hceEEEeCCCCHHHHHHHHHHHH
Confidence 9 9988666 799999999987554
No 99
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.31 E-value=6.3e-06 Score=81.52 Aligned_cols=35 Identities=17% Similarity=0.185 Sum_probs=30.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
..++|+||+|+|||++++.++++.+..++.+++..
T Consensus 31 ~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~ 65 (357)
T 2fna_A 31 PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRK 65 (357)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGG
T ss_pred CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchh
Confidence 48999999999999999999999877777777653
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.31 E-value=2.3e-06 Score=84.12 Aligned_cols=42 Identities=10% Similarity=0.091 Sum_probs=30.7
Q ss_pred HHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 141 VVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 141 ~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
....+++++... ..+..+++||||||||||++|++||+..+.
T Consensus 89 ~~~~l~~~l~~~-~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 89 AASVFLGWATKK-FGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp HHHHHHHHHTTC-STTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHhCC-CCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 344455555431 123468999999999999999999998655
No 101
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.12 E-value=5.9e-06 Score=75.99 Aligned_cols=27 Identities=22% Similarity=0.340 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
.+.|.||+|+|||||++.++..+++.+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~ 28 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRA 28 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcC
Confidence 478999999999999999999987544
No 102
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=98.12 E-value=8.6e-06 Score=75.50 Aligned_cols=81 Identities=11% Similarity=0.094 Sum_probs=51.0
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc------ccc--CCCCC---------------hHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE------LES--GNAGE---------------PAKLIRQRY 209 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~------l~s--~~~Ge---------------~~~~ir~~f 209 (473)
++.+...++|+||||+|||++++.++...+...+.++... +.. ...|. ....+++..
T Consensus 16 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 95 (220)
T 2cvh_A 16 GFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQMAETRGLNPEEALSRFILFTPSDFKEQRRVI 95 (220)
T ss_dssp SBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHHHHTTTCCHHHHHHHEEEECCTTTSHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHHHHhcCCChHHHhhcEEEEecCCHHHHHHHH
Confidence 4566678999999999999999999986666666666543 000 00010 001112233
Q ss_pred HHHHHHHHcCCceEEEecCCCCccc
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
..+..+++. .|.+|+|||+..+..
T Consensus 96 ~~~~~l~~~-~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 96 GSLKKTVDS-NFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHHHCCT-TEEEEEEECCCCCTT
T ss_pred HHHHHHhhc-CCCEEEEcCcHHHhh
Confidence 333333323 699999999998864
No 103
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.09 E-value=1.3e-06 Score=89.90 Aligned_cols=106 Identities=17% Similarity=0.188 Sum_probs=66.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEeccccccc-------------CCCCChHHHHHHHHHHHHHHHHcCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELES-------------GNAGEPAKLIRQRYREAADIIKKGKM 221 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~s-------------~~~Ge~~~~ir~~f~~A~~~~~~~~p 221 (473)
..+||+|++|||||++|+++....+ .+|+.++++.+.. .+.|.... ....|..| ..
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~-~~g~~~~a-------~~ 232 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSS-KEGFFELA-------DG 232 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSC-BCCHHHHT-------TT
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccc-cCCceeeC-------CC
Confidence 4579999999999999999998864 5899999876531 01111100 11234433 36
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF 286 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~ 286 (473)
.+||||||+.+.. .++..|+.++++.+...+++. .....++.||+|||..
T Consensus 233 gtlfldei~~l~~-------------~~q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~ 282 (387)
T 1ny5_A 233 GTLFLDEIGELSL-------------EAQAKLLRVIESGKFYRLGGR--KEIEVNVRILAATNRN 282 (387)
T ss_dssp SEEEEESGGGCCH-------------HHHHHHHHHHHHSEECCBTCC--SBEECCCEEEEEESSC
T ss_pred cEEEEcChhhCCH-------------HHHHHHHHHHhcCcEEeCCCC--ceeeccEEEEEeCCCC
Confidence 7999999997743 233455555553222223322 1223578899999974
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.05 E-value=3.3e-06 Score=86.42 Aligned_cols=128 Identities=19% Similarity=0.274 Sum_probs=75.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCC--cEEecccccccCC-------------CCChHHHHHHHHHHHHHHHHcCCce
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGIN--PIMMSAGELESGN-------------AGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~--~i~vs~s~l~s~~-------------~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+|++|++||||+++|+++....+.. |+.++++.+-... .|... .-...|..| ...
T Consensus 153 ~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~-~~~g~~~~a-------~~g 224 (368)
T 3dzd_A 153 APVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALT-RKKGKLELA-------DQG 224 (368)
T ss_dssp SCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCC-CEECHHHHT-------TTS
T ss_pred hhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCccc-ccCChHhhc-------CCC
Confidence 348999999999999999999987653 9999998654211 01000 001133323 356
Q ss_pred EEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCCccccccCCCceE-
Q 011983 223 CLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTLYAPLIRDGRMEK- 301 (473)
Q Consensus 223 ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~Ld~aLlR~GRfd~- 301 (473)
.||||||+.+-. .++..|+.++++.+-..+.+. ....-++.||+|||.. + ..+...|+|..
T Consensus 225 tlfldei~~l~~-------------~~Q~~Ll~~l~~~~~~~~g~~--~~~~~~~rii~at~~~--l-~~~v~~g~fr~d 286 (368)
T 3dzd_A 225 TLFLDEVGELDQ-------------RVQAKLLRVLETGSFTRLGGN--QKIEVDIRVISATNKN--L-EEEIKKGNFRED 286 (368)
T ss_dssp EEEEETGGGSCH-------------HHHHHHHHHHHHSEECCBTCC--CBEECCCEEEEEESSC--H-HHHHHTTSSCHH
T ss_pred eEEecChhhCCH-------------HHHHHHHHHHHhCCcccCCCC--cceeeeeEEEEecCCC--H-HHHHHcCCccHH
Confidence 899999997743 233556666653332233322 1223467899999853 1 22344455533
Q ss_pred --------EEecCCHHHH
Q 011983 302 --------FYWAPTREDR 311 (473)
Q Consensus 302 --------~i~~P~~eeR 311 (473)
.+.+|...+|
T Consensus 287 L~~rl~~~~i~lPpLreR 304 (368)
T 3dzd_A 287 LYYRLSVFQIYLPPLRER 304 (368)
T ss_dssp HHHHHTSEEEECCCGGGS
T ss_pred HHHHhCCeEEeCCChhhc
Confidence 3556665444
No 105
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=97.97 E-value=9.7e-07 Score=93.12 Aligned_cols=126 Identities=13% Similarity=0.048 Sum_probs=72.0
Q ss_pred cEEEEEcCCCCcHHHHHHHH-HHHhCCCcEEecc--c---ccccCCCCChHHHH-HHHHHHHHHHHHcCCceEEEecCCC
Q 011983 158 LILGIWGGKGQGKSFQCELV-FAKMGINPIMMSA--G---ELESGNAGEPAKLI-RQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaI-A~~lg~~~i~vs~--s---~l~s~~~Ge~~~~i-r~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
..+||.|+||| ||++|+++ ++-+.... .+.+ + .|.....+.+...+ ...+. .....++|||||+
T Consensus 240 ihVLL~G~PGt-KS~Lar~i~~~i~pR~~-ft~g~~ss~~gLt~s~r~~tG~~~~~G~l~-------LAdgGvl~lDEIn 310 (506)
T 3f8t_A 240 LHVLLAGYPVV-CSEILHHVLDHLAPRGV-YVDLRRTELTDLTAVLKEDRGWALRAGAAV-------LADGGILAVDHLE 310 (506)
T ss_dssp CCEEEESCHHH-HHHHHHHHHHHTCSSEE-EEEGGGCCHHHHSEEEEESSSEEEEECHHH-------HTTTSEEEEECCT
T ss_pred eeEEEECCCCh-HHHHHHHHHHHhCCCeE-EecCCCCCccCceEEEEcCCCcccCCCeeE-------EcCCCeeehHhhh
Confidence 37999999999 99999999 66543322 2211 0 01100000000000 00112 1225799999999
Q ss_pred CccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC-----------CCccccccCCCc
Q 011983 231 AGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS-----------TLYAPLIRDGRM 299 (473)
Q Consensus 231 al~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~-----------~Ld~aLlR~GRf 299 (473)
.+-. .....|++.++ ...+.+.|. .-..+..||+|+|... .|+++++. ||
T Consensus 311 ~~~~-------------~~qsaLlEaME-e~~VtI~G~---~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLD--RF 371 (506)
T 3f8t_A 311 GAPE-------------PHRWALMEAMD-KGTVTVDGI---ALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLS--HF 371 (506)
T ss_dssp TCCH-------------HHHHHHHHHHH-HSEEEETTE---EEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHT--TC
T ss_pred hCCH-------------HHHHHHHHHHh-CCcEEECCE---EcCCCeEEEEEeCcccccCCCCCccccCCChHHhh--he
Confidence 7632 23356666665 234455554 3356788999999865 78999999 99
Q ss_pred eEEEec---CCHHHH
Q 011983 300 EKFYWA---PTREDR 311 (473)
Q Consensus 300 d~~i~~---P~~eeR 311 (473)
|..+.+ |+.+.-
T Consensus 372 DLi~i~~d~pd~e~d 386 (506)
T 3f8t_A 372 DLIAFLGVDPRPGEP 386 (506)
T ss_dssp SEEEETTC-------
T ss_pred eeEEEecCCCChhHh
Confidence 998883 665543
No 106
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.94 E-value=1.1e-05 Score=76.02 Aligned_cols=83 Identities=12% Similarity=0.149 Sum_probs=52.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH--h-------CCCcEEeccccccc--------CCCCC---------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK--M-------GINPIMMSAGELES--------GNAGE--------------- 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~--l-------g~~~i~vs~s~l~s--------~~~Ge--------------- 200 (473)
++.+...++|+||||+|||++++.++.. + +...++++...... ...|-
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 99 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSDVLDNVAYARAF 99 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHHHhhCeEEEecC
Confidence 4566678999999999999999999995 2 34456665543100 00110
Q ss_pred hHHHHHHHHHHHHHHHHcCCceEEEecCCCCcccc
Q 011983 201 PAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGR 235 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~ 235 (473)
....+..++..+.+.++...|.+|+|||+..+...
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~ 134 (243)
T 1n0w_A 100 NTDHQTQLLYQASAMMVESRYALLIVDSATALYRT 134 (243)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-
T ss_pred CHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHH
Confidence 11122233344445555788999999999988643
No 107
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.90 E-value=1.6e-05 Score=71.41 Aligned_cols=35 Identities=14% Similarity=0.104 Sum_probs=30.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s 191 (473)
|..|+|.||||+|||++++++++.++.+++.++..
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D 37 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVD 37 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccc
Confidence 56799999999999999999999999888875543
No 108
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.86 E-value=5.6e-05 Score=94.86 Aligned_cols=140 Identities=16% Similarity=0.137 Sum_probs=93.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCCCccccCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLDAGAGRMG 237 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~~r~ 237 (473)
.|..+.||+|||||.+++.+|+.+|..++.++|++-. ....+.++|.-+. ...+-..|||++.+-..
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~------d~~~~g~i~~G~~-----~~GaW~cfDEfNrl~~~-- 671 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF------DLQAMSRIFVGLC-----QCGAWGCFDEFNRLEER-- 671 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC------CHHHHHHHHHHHH-----HHTCEEEEETTTSSCHH--
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC------CHHHHHHHHhhHh-----hcCcEEEehhhhcCCHH--
Confidence 4667999999999999999999999999999998644 2455667776553 34677889999976322
Q ss_pred CCCccchhhHHHHHHHHHhhcCCCcccCC-CCcccCCCCCceEEEecC----CCCCCccccccCCCceEEEe-cCCHHHH
Q 011983 238 GTTQYTVNNQMVNATLMNIADNPTNVQLP-GMYNQEENPRVPIIVTGN----DFSTLYAPLIRDGRMEKFYW-APTREDR 311 (473)
Q Consensus 238 ~~~~~~~~~~~v~~~Ll~lld~~~~v~l~-g~~~~~~~~~V~VIaTTN----~~~~Ld~aLlR~GRfd~~i~-~P~~eeR 311 (473)
..++-.+.+......+.+....+.+. |.-. .-.+...|++|.| ....||+.|+. ||--+.. .|+.+..
T Consensus 672 ---vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i-~l~~~~~vfiTmNpgY~gr~eLP~nLk~--lFr~v~m~~Pd~~~i 745 (3245)
T 3vkg_A 672 ---ILSAVSQQIQTIQVALKENSKEVELLGGKNI-SLHQDMGIFVTMNPGYAGRSNLPDNLKK--LFRSMAMIKPDREMI 745 (3245)
T ss_dssp ---HHHHHHHHHHHHHHHHHHTCSEECCC---CE-ECCTTCEEEECBCCCGGGCCCSCHHHHT--TEEEEECCSCCHHHH
T ss_pred ---HHHHHHHHHHHHHHHHHcCCCeEEecCCCEE-eecCCeEEEEEeCCCccCcccChHHHHh--hcEEEEEeCCCHHHH
Confidence 11111122222222233445556666 5311 2346778889998 35689999999 7755443 6999888
Q ss_pred HHHHH
Q 011983 312 IGVCS 316 (473)
Q Consensus 312 ~~Il~ 316 (473)
.+|+-
T Consensus 746 ~ei~L 750 (3245)
T 3vkg_A 746 AQVML 750 (3245)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88753
No 109
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.80 E-value=3.5e-05 Score=93.33 Aligned_cols=82 Identities=16% Similarity=0.183 Sum_probs=62.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCC----CC--------ChHHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AG--------EPAKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~----~G--------e~~~~ir~~f~~A~~~~~ 217 (473)
++.+...++|+|+||+|||+||..+|..+ +.++++++..+....+ .| ..+..+.+++..+..+.+
T Consensus 728 Gl~~G~lilIaG~PG~GKTtLalqlA~~~a~~g~~VlyiS~Ees~~ql~A~rlG~~~~~l~i~~~~~i~~i~~~~r~l~~ 807 (2050)
T 3cmu_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (2050)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECCCcHHHHHHHHcCCCccceEEecCCCHHHHHHHHHHHhh
Confidence 56788899999999999999999999885 3468888876544332 22 122346667777776666
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...|++||||.+..+..
T Consensus 808 ~~~~~LVIIDsLq~i~~ 824 (2050)
T 3cmu_A 808 SGAVDVIVVDSVAALTP 824 (2050)
T ss_dssp HTCCSEEEESCGGGCCC
T ss_pred ccCCCEEEEcchhhhcc
Confidence 78899999999999976
No 110
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=97.77 E-value=0.00021 Score=71.43 Aligned_cols=147 Identities=12% Similarity=0.088 Sum_probs=90.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CC-CcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GI-NPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~-~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
+.+..+|||||+|.||+..++.+++.+ +. ++..+. +. + ...++++++.+...---....|++|||++
T Consensus 16 ~~~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~---~~----~--~~~~~~l~~~~~~~plf~~~kvvii~~~~ 86 (343)
T 1jr3_D 16 GLRAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFS---ID----P--NTDWNAIFSLCQAMSLFASRQTLLLLLPE 86 (343)
T ss_dssp CCCSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEE---CC----T--TCCHHHHHHHHHHHHHCCSCEEEEEECCS
T ss_pred CCCcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEE---ec----C--CCCHHHHHHHhcCcCCccCCeEEEEECCC
Confidence 456789999999999999999999874 32 111111 11 1 12355666655422224567899999998
Q ss_pred C-ccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCC------CCCccccccCCCceEEE
Q 011983 231 A-GAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDF------STLYAPLIRDGRMEKFY 303 (473)
Q Consensus 231 a-l~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~------~~Ld~aLlR~GRfd~~i 303 (473)
. +... ....|+..++ +..+++++|.+|+.+ ..+.+++.+ |...+-
T Consensus 87 ~kl~~~-------------~~~aLl~~le-------------~p~~~~~~il~~~~~~~~~~~~k~~~~i~s--r~~~~~ 138 (343)
T 1jr3_D 87 NGPNAA-------------INEQLLTLTG-------------LLHDDLLLIVRGNKLSKAQENAAWFTALAN--RSVQVT 138 (343)
T ss_dssp SCCCTT-------------HHHHHHHHHT-------------TCBTTEEEEEEESCCCTTTTTSHHHHHHTT--TCEEEE
T ss_pred CCCChH-------------HHHHHHHHHh-------------cCCCCeEEEEEcCCCChhhHhhHHHHHHHh--CceEEE
Confidence 7 4211 2244666555 344566666655543 457778887 554433
Q ss_pred e-cCCHHHHHHHHHhhcCCCC--CCHHHHHHHHhcCCC
Q 011983 304 W-APTREDRIGVCSGIFRTDN--VPKEDIVKLVDTFPG 338 (473)
Q Consensus 304 ~-~P~~eeR~~Il~~~l~~~~--v~~~~l~~l~~~~sg 338 (473)
+ .|+.++....++..+...+ ++.+.+..+++...|
T Consensus 139 ~~~l~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g 176 (343)
T 1jr3_D 139 CQTPEQAQLPRWVAARAKQLNLELDDAANQVLCYCYEG 176 (343)
T ss_dssp ECCCCTTHHHHHHHHHHHHTTCEECHHHHHHHHHSSTT
T ss_pred eeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhch
Confidence 3 5677788878887776554 556666666655433
No 111
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.75 E-value=6.5e-05 Score=76.70 Aligned_cols=82 Identities=15% Similarity=0.150 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCC----CCC--------hHHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGE--------PAKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~----~Ge--------~~~~ir~~f~~A~~~~~ 217 (473)
|+.+...++|+||||+|||+|+..++..+ +-.+++++........ .|- ....+.+++..+..+++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVR 136 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhh
Confidence 55666789999999999999999999873 5566666664422100 000 00112334444444555
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...+.+++||.+-.+.+
T Consensus 137 ~~~~dlvVIDSi~~l~~ 153 (356)
T 3hr8_A 137 SGVVDLIVVDSVAALVP 153 (356)
T ss_dssp TSCCSEEEEECTTTCCC
T ss_pred hcCCCeEEehHhhhhcC
Confidence 68899999999999886
No 112
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.73 E-value=4.9e-05 Score=70.55 Aligned_cols=28 Identities=21% Similarity=0.347 Sum_probs=23.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
++.+...++|+||||+|||++++.++..
T Consensus 19 gi~~G~~~~i~G~~GsGKTtl~~~l~~~ 46 (235)
T 2w0m_A 19 GIPQGFFIALTGEPGTGKTIFSLHFIAK 46 (235)
T ss_dssp SEETTCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3455568999999999999999999965
No 113
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.71 E-value=2.5e-05 Score=79.47 Aligned_cols=82 Identities=16% Similarity=0.169 Sum_probs=53.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccC----CCCCh--------HHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESG----NAGEP--------AKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~f~~A~~~~~ 217 (473)
++.+...++|+||||+|||+||..++... |-..++++....... ..|.. ...+.+++..+..+++
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~ 136 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVR 136 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHh
Confidence 45666789999999999999999998763 556666665432210 01100 0012334444444555
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...|.+|+||++..+..
T Consensus 137 ~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 137 SGALDIIVIDSVAALVP 153 (349)
T ss_dssp TTCCSEEEEECGGGCCC
T ss_pred cCCCCEEEEcChHhhcc
Confidence 77899999999999974
No 114
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.71 E-value=0.00011 Score=75.30 Aligned_cols=82 Identities=15% Similarity=0.136 Sum_probs=54.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecccccccCC----CCCh--------HHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELESGN----AGEP--------AKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s~~----~Ge~--------~~~ir~~f~~A~~~~~ 217 (473)
|+.+...++|+||||+|||++|..+|... |.++++++...-.... .|.. ...+.+++..+..+++
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~ 149 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVR 149 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHT
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHh
Confidence 45666789999999999999999988763 5666776654322110 1100 0112334444444555
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...+.+|+||.+..+..
T Consensus 150 ~~~~~lVVIDsl~~l~~ 166 (366)
T 1xp8_A 150 SGAIDVVVVDSVAALTP 166 (366)
T ss_dssp TTCCSEEEEECTTTCCC
T ss_pred cCCCCEEEEeChHHhcc
Confidence 67899999999999975
No 115
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.68 E-value=0.00018 Score=69.22 Aligned_cols=41 Identities=17% Similarity=0.285 Sum_probs=35.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l 193 (473)
....|..++|.||||+|||++++.+++.++..++.+++..+
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 45678899999999999999999999999876777777665
No 116
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.66 E-value=7.8e-05 Score=73.56 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=43.3
Q ss_pred hhhHHHHHHHHHHhhhcC-CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccccc
Q 011983 134 PAFMDKVVVHITKNFLNL-PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELES 195 (473)
Q Consensus 134 ~~~~d~~~~~i~k~~l~~-~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s 195 (473)
++-+.++...++..++.. .....|..++|.||||+|||++|+.++++++..++.++...+..
T Consensus 9 ~~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~ 71 (287)
T 1gvn_B 9 DKQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQ 71 (287)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHT
T ss_pred HHHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHH
Confidence 333344445555555542 23456889999999999999999999999865667777655543
No 117
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.65 E-value=7.8e-05 Score=69.35 Aligned_cols=29 Identities=17% Similarity=0.320 Sum_probs=24.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++.+-..+.|.||+|+|||+|++.++...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 45566789999999999999999999854
No 118
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.65 E-value=3.1e-05 Score=70.15 Aligned_cols=34 Identities=12% Similarity=-0.142 Sum_probs=29.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.++.|+|.||||+|||++++.+|+.+|.+++..+
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 3567999999999999999999999999887554
No 119
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=97.63 E-value=7.7e-05 Score=89.29 Aligned_cols=82 Identities=16% Similarity=0.191 Sum_probs=59.3
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccccc----CCCCC--------hHHHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGELES----GNAGE--------PAKLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l~s----~~~Ge--------~~~~ir~~f~~A~~~~~ 217 (473)
|+.+...++|+||||+|||+||..+|.+. +.++++++..+... ...|- .+..+.+++..+..+.+
T Consensus 728 Gl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees~~ql~A~~lGvd~~~L~i~~~~~leei~~~l~~lv~ 807 (1706)
T 3cmw_A 728 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 807 (1706)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccchHHHHHHHHcCCChhheEEecCCcHHHHHHHHHHHHH
Confidence 56788899999999999999999998874 45677777654331 11120 11134566666666666
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...|.+|+||.+..+.+
T Consensus 808 ~~~~~lVVIDsLq~l~~ 824 (1706)
T 3cmw_A 808 SGAVDVIVVDSVAALTP 824 (1706)
T ss_dssp HTCCSEEEESCSTTCCC
T ss_pred ccCCCEEEEechhhhcc
Confidence 78999999999999975
No 120
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.62 E-value=0.00018 Score=67.66 Aligned_cols=26 Identities=19% Similarity=0.228 Sum_probs=22.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVF 178 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA 178 (473)
++.+...++|.||+|+|||+|++.++
T Consensus 26 gi~~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHH
Confidence 45566789999999999999999998
No 121
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.62 E-value=4.2e-05 Score=69.38 Aligned_cols=34 Identities=12% Similarity=0.249 Sum_probs=30.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
...|..|+|.|+||+|||++++.+++.++..++.
T Consensus 2 ~~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 2 MQTPALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp CSCCEEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 3567889999999999999999999999987765
No 122
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.59 E-value=0.00011 Score=73.40 Aligned_cols=82 Identities=9% Similarity=0.165 Sum_probs=54.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEeccccccc--------CCCCC---------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELES--------GNAGE--------------- 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s--------~~~Ge--------------- 200 (473)
++.+...++|+||||+|||++|..+|... +...++++...... ...|-
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~ 182 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAI 182 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCC
Confidence 45666789999999999999999999874 44566666543210 00110
Q ss_pred hHHHHHHHHHHHHHHHHc-CCceEEEecCCCCccc
Q 011983 201 PAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 234 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~ 234 (473)
....+.+++..+..+++. ..+.+|+||.+..+..
T Consensus 183 ~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 217 (324)
T 2z43_A 183 NTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFR 217 (324)
T ss_dssp SHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHH
T ss_pred CHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhh
Confidence 011122344555555656 8899999999998864
No 123
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.59 E-value=9.6e-05 Score=75.38 Aligned_cols=82 Identities=16% Similarity=0.177 Sum_probs=53.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC----CCCChH--------HHHHHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG----NAGEPA--------KLIRQRYREAADIIK 217 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~----~~Ge~~--------~~ir~~f~~A~~~~~ 217 (473)
|+.+...++|+||||+|||++|..+|.. .|..+++++....... ..|... ....++...+..+++
T Consensus 59 Gl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~ 138 (356)
T 1u94_A 59 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALAR 138 (356)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHh
Confidence 4566788999999999999999999876 3567777776432110 001000 012233333334445
Q ss_pred cCCceEEEecCCCCccc
Q 011983 218 KGKMCCLFINDLDAGAG 234 (473)
Q Consensus 218 ~~~p~ILfIDEiDal~~ 234 (473)
...+.+|+||.+..+..
T Consensus 139 ~~~~~lVVIDsl~~l~~ 155 (356)
T 1u94_A 139 SGAVDVIVVDSVAALTP 155 (356)
T ss_dssp HTCCSEEEEECGGGCCC
T ss_pred ccCCCEEEEcCHHHhcc
Confidence 67899999999999875
No 124
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=97.56 E-value=0.00017 Score=69.81 Aligned_cols=70 Identities=14% Similarity=0.183 Sum_probs=44.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccccccC---CCCChHHHHHHHHHHH-HHHHHcCCceEEEecC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGELESG---NAGEPAKLIRQRYREA-ADIIKKGKMCCLFIND 228 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~l~s~---~~Ge~~~~ir~~f~~A-~~~~~~~~p~ILfIDE 228 (473)
.+..|+|.|+||+|||++|+.+++. .|..++.++...+... |....+..++.....+ ...+ . . ..+++|.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~l~~~~~~~e~~~~~~~~~~i~~~l-~-~-~~vIiD~ 79 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRESFPVWKEKYEEFIKKSTYRLIDSAL-K-N-YWVIVDD 79 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTTSSSCCGGGHHHHHHHHHHHHHHHH-T-T-SEEEECS
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHHHhhhhHHHHHHHHHHHHHHHHHHh-h-C-CEEEEeC
Confidence 3668999999999999999999998 7888876665544332 3222344444332222 1122 2 2 6677775
No 125
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.55 E-value=7.6e-05 Score=75.46 Aligned_cols=82 Identities=13% Similarity=0.065 Sum_probs=52.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------CCCcEEecccccccC--------CCCC-h-------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------GINPIMMSAGELESG--------NAGE-P------------- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------g~~~i~vs~s~l~s~--------~~Ge-~------------- 201 (473)
++.+...++|+||||+|||++|..+|... +-..++++....+.. ..|. .
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~~g~~~~~~l~~l~~~~~~ 197 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADRFNVDHDAVLDNVLYARAY 197 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHcCCCHHHHHhceeEeecC
Confidence 55666789999999999999999999872 445566665432110 0010 0
Q ss_pred -HHHHHHHHHHHHHHHHc--CCceEEEecCCCCccc
Q 011983 202 -AKLIRQRYREAADIIKK--GKMCCLFINDLDAGAG 234 (473)
Q Consensus 202 -~~~ir~~f~~A~~~~~~--~~p~ILfIDEiDal~~ 234 (473)
...+..++..+..+++. ..+.+|+||.+..+..
T Consensus 198 ~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~ 233 (343)
T 1v5w_A 198 TSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFR 233 (343)
T ss_dssp STTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHH
T ss_pred CHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHH
Confidence 01112333444455556 7899999999999874
No 126
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.53 E-value=0.00031 Score=71.24 Aligned_cols=82 Identities=17% Similarity=0.176 Sum_probs=53.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEeccccccc--------CCCCC---------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGE--------------- 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s--------~~~Ge--------------- 200 (473)
++.+-..++|+||||+|||+|++.++.... -..++++..+... ...+-
T Consensus 127 gi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~~~~~i~~i~q~~~~~~~~v~~ni~~~~~~ 206 (349)
T 1pzn_A 127 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTFRPERIREIAQNRGLDPDEVLKHIYVARAF 206 (349)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCCCHHHHHHHHHTTTCCHHHHGGGEEEEECC
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCCCHHHHHHHHHHcCCCHHHHhhCEEEEecC
Confidence 456667899999999999999999999862 2335555533210 00000
Q ss_pred hHHHHHHHHHHHHHHHHc-----CCceEEEecCCCCccc
Q 011983 201 PAKLIRQRYREAADIIKK-----GKMCCLFINDLDAGAG 234 (473)
Q Consensus 201 ~~~~ir~~f~~A~~~~~~-----~~p~ILfIDEiDal~~ 234 (473)
......+++..+..+++. ..|.+|+|||+-++..
T Consensus 207 ~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld 245 (349)
T 1pzn_A 207 NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFR 245 (349)
T ss_dssp SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHH
T ss_pred ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhh
Confidence 012233455556656655 7899999999998864
No 127
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.53 E-value=0.00025 Score=66.63 Aligned_cols=38 Identities=18% Similarity=0.233 Sum_probs=28.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH----hCCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK----MGINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~----lg~~~i~vs~ 190 (473)
|+.+-..++|+|+||+|||++|-.+|.+ .+.+.++++.
T Consensus 26 Gl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 26 GFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp SEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 4566678999999999999999877643 3566666554
No 128
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.52 E-value=5.7e-05 Score=68.23 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..+..|+|+|+||+|||++++.+++.++..++.+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4456789999999999999999999999877654
No 129
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.50 E-value=6e-05 Score=71.72 Aligned_cols=41 Identities=32% Similarity=0.571 Sum_probs=33.6
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccc
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELE 194 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~ 194 (473)
...+.|+.|+|.||||+||+|+|+.|++++|++. ++.++++
T Consensus 24 ~~~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~h--IstGdll 64 (217)
T 3umf_A 24 QKLAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNH--LSSGDLL 64 (217)
T ss_dssp CCTTSCEEEEEECCTTCCHHHHHHHHHHHHCCEE--ECHHHHH
T ss_pred hhccCCcEEEEECCCCCCHHHHHHHHHHHHCCce--EcHHHHH
Confidence 4567889999999999999999999999998754 5555443
No 130
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.50 E-value=6.7e-05 Score=69.29 Aligned_cols=35 Identities=17% Similarity=0.137 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.+...|+|.||||+|||++++.+|+.+|..++..+
T Consensus 23 ~~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 23 NAMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 45568999999999999999999999999887544
No 131
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.48 E-value=8.4e-05 Score=68.46 Aligned_cols=35 Identities=26% Similarity=0.284 Sum_probs=30.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
...|..|+|.|+||+|||++|+.+++.++.+++.+
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 35677899999999999999999999999887654
No 132
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.46 E-value=0.00066 Score=63.64 Aligned_cols=38 Identities=21% Similarity=0.322 Sum_probs=27.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~ 190 (473)
++.+...++|+||||+|||+++..++.. .+...++++.
T Consensus 19 Gl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 19 GIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp SEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 4555678999999999999999888765 2444444443
No 133
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.45 E-value=0.00013 Score=73.52 Aligned_cols=77 Identities=16% Similarity=0.120 Sum_probs=48.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEecccccccC----CCCCh--------HHHHHHH-HHHHHHH--HHc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAGELESG----NAGEP--------AKLIRQR-YREAADI--IKK 218 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s~l~s~----~~Ge~--------~~~ir~~-f~~A~~~--~~~ 218 (473)
.++|+||||+|||+||-.++.+. |-..++++..+-... ..|-. +....++ +..+..+ ++.
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~l~~i~~ 109 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQLDAIER 109 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHHHHTCCT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHHHHHhhc
Confidence 68999999999999988776653 566777776532210 01110 0112233 3322222 357
Q ss_pred CCceEEEecCCCCcccc
Q 011983 219 GKMCCLFINDLDAGAGR 235 (473)
Q Consensus 219 ~~p~ILfIDEiDal~~~ 235 (473)
.+|.+|+||-|-++.++
T Consensus 110 ~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 110 GEKVVVFIDSLGNLASK 126 (333)
T ss_dssp TCCEEEEEECSTTCBCC
T ss_pred cCceEEEEecccccccc
Confidence 78999999999999853
No 134
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.44 E-value=7e-05 Score=67.81 Aligned_cols=32 Identities=19% Similarity=0.135 Sum_probs=28.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|+|.|+||+|||++|+.+++.+|++++..+
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 35889999999999999999999999876543
No 135
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.44 E-value=7.6e-05 Score=67.50 Aligned_cols=31 Identities=35% Similarity=0.705 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
|..|+|.|+||+|||++|+.+++.+|.+++.
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 6789999999999999999999999987654
No 136
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.41 E-value=9.2e-05 Score=67.28 Aligned_cols=34 Identities=32% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.+..|+|.|+||+|||++++.+++.++.+++..+
T Consensus 8 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 8 KTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp TSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 4678999999999999999999999998766543
No 137
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.41 E-value=0.00011 Score=65.07 Aligned_cols=32 Identities=16% Similarity=-0.071 Sum_probs=28.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|+|.||||+|||++++.+++.++.+++..+
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 35889999999999999999999998876544
No 138
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.40 E-value=0.00033 Score=66.86 Aligned_cols=74 Identities=11% Similarity=0.044 Sum_probs=44.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc-------ccccCCCCCh-----HHHHHHHHHHHHHHHHcCCce
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG-------ELESGNAGEP-----AKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s-------~l~s~~~Ge~-----~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..++++||||+|||+++..++..+ |...+.+... .+.+. .|.. .....++++.+.+.+....+.
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~sr-lG~~~~~~~~~~~~~i~~~i~~~~~~~~~d 91 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSR-TGTSLPSVEVESAPEILNYIMSNSFNDETK 91 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCC-CCCSSCCEEESSTHHHHHHHHSTTSCTTCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHh-cCCCccccccCCHHHHHHHHHHHhhCCCCC
Confidence 578889999999999988887774 5555555322 12222 2211 011224555444222235689
Q ss_pred EEEecCCCCc
Q 011983 223 CLFINDLDAG 232 (473)
Q Consensus 223 ILfIDEiDal 232 (473)
+|+|||+..+
T Consensus 92 vViIDEaQ~l 101 (223)
T 2b8t_A 92 VIGIDEVQFF 101 (223)
T ss_dssp EEEECSGGGS
T ss_pred EEEEecCccC
Confidence 9999999643
No 139
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.40 E-value=7.4e-05 Score=68.90 Aligned_cols=31 Identities=13% Similarity=-0.066 Sum_probs=23.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEe
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK---MGINPIMM 188 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~v 188 (473)
..++++||||+|||+++..++.. .|...+.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 57889999999999998666655 35544443
No 140
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=97.39 E-value=0.00029 Score=55.75 Aligned_cols=51 Identities=16% Similarity=0.226 Sum_probs=42.0
Q ss_pred cCCHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 305 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+|+.++|.+||+.++.+ .+++.+.+++.+++|+|++|. ++|..+...++++
T Consensus 2 lPd~~~R~~Il~~~l~~~~~~~~~dl~~la~~t~G~SGADi~---~l~~eA~~~a~~~ 56 (78)
T 3kw6_A 2 PPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRE 56 (78)
T ss_dssp CCCHHHHHHHHHHHHTTSEECTTCCHHHHHHTCTTCCHHHHH---HHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHhcCCCCCCccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 69999999999988876 467888999999999999888 7777766666554
No 141
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.38 E-value=0.0001 Score=69.01 Aligned_cols=34 Identities=15% Similarity=0.192 Sum_probs=29.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
+++..|+|.|+||+|||++++.+|+.++..++..
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4567899999999999999999999999876554
No 142
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.37 E-value=0.00012 Score=65.95 Aligned_cols=34 Identities=26% Similarity=0.497 Sum_probs=29.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..|+.|+|.|+||+|||++|+.+++.+|..++..
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 3567899999999999999999999999776654
No 143
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.36 E-value=0.00074 Score=70.82 Aligned_cols=90 Identities=17% Similarity=0.138 Sum_probs=65.5
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEec----CCCCCCccccccC
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTG----NDFSTLYAPLIRD 296 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTT----N~~~~Ld~aLlR~ 296 (473)
..|||+||+|+++...++ ...++...-|++.|+.+++..+ +.. .|.....++|++|+|+ +.+..+-|+|+.
T Consensus 251 ~~il~~DEidki~~~~~~-~~~D~s~egvq~aLL~~le~~~-~~~--~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~- 325 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEY-SGADVSREGVQRDLLPLVEGST-VST--KHGMVKTDHILFIASGAFQVARPSDLIPELQG- 325 (444)
T ss_dssp HCEEEEETGGGGSCCSSC-SSSHHHHHHHHHHHHHHHHCCE-EEE--TTEEEECTTCEEEEEECCSSCCGGGSCHHHHT-
T ss_pred CCeeeHHHHHHHhhccCC-CCCCchHHHHHHHHHHHhcccc-ccc--ccceecCCcEEEEeccccccCChhhcchHHhc-
Confidence 568999999999865432 3445566678899999998433 222 2334567899999998 234445578888
Q ss_pred CCceEEEec--CCHHHHHHHHH
Q 011983 297 GRMEKFYWA--PTREDRIGVCS 316 (473)
Q Consensus 297 GRfd~~i~~--P~~eeR~~Il~ 316 (473)
||+..+.+ .+.++..+|+.
T Consensus 326 -R~~i~i~l~~lt~~e~~~Il~ 346 (444)
T 1g41_A 326 -RLPIRVELTALSAADFERILT 346 (444)
T ss_dssp -TCCEEEECCCCCHHHHHHHHH
T ss_pred -ccceeeeCCCCCHHHHHHHHH
Confidence 99998885 68999999984
No 144
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.36 E-value=0.00012 Score=65.41 Aligned_cols=33 Identities=18% Similarity=0.079 Sum_probs=28.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
...|+|.|+||+|||++++.+|+.+|++++..+
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~~lg~~~id~D 39 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGLALKLEVLDTD 39 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 357999999999999999999999999887643
No 145
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.36 E-value=0.0001 Score=67.27 Aligned_cols=34 Identities=24% Similarity=0.324 Sum_probs=28.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH-hCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK-MGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~-lg~~~i~vs 189 (473)
.+..|+|+|+||+|||++++.+++. +|++++.++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 3567999999999999999999999 787776543
No 146
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.35 E-value=0.0003 Score=65.93 Aligned_cols=118 Identities=14% Similarity=0.126 Sum_probs=74.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecccc---------cccCC-----------CCC------hHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAGE---------LESGN-----------AGE------PAKLIRQRY 209 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s~---------l~s~~-----------~Ge------~~~~ir~~f 209 (473)
.|++|+++|.|||++|-.+|-. .|..+..+..-. +.... .-. .....+..|
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~l 109 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAVW 109 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHHH
Confidence 5889999999999999999887 466666653211 22211 111 134556778
Q ss_pred HHHHHHHHcCCceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCCCC
Q 011983 210 REAADIIKKGKMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFSTL 289 (473)
Q Consensus 210 ~~A~~~~~~~~p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~~L 289 (473)
..+.+.+......+|+|||+-....-.- .....+.+.| . ....+.-||+|+|.+
T Consensus 110 ~~a~~~l~~~~yDlvILDEi~~al~~g~------l~~~ev~~~l----~-------------~Rp~~~~vIlTGr~a--- 163 (196)
T 1g5t_A 110 QHGKRMLADPLLDMVVLDELTYMVAYDY------LPLEEVISAL----N-------------ARPGHQTVIITGRGC--- 163 (196)
T ss_dssp HHHHHHTTCTTCSEEEEETHHHHHHTTS------SCHHHHHHHH----H-------------TSCTTCEEEEECSSC---
T ss_pred HHHHHHHhcCCCCEEEEeCCCccccCCC------CCHHHHHHHH----H-------------hCcCCCEEEEECCCC---
Confidence 8888777778899999999965432210 0111233333 2 445678899999985
Q ss_pred ccccccCCCceEEEe
Q 011983 290 YAPLIRDGRMEKFYW 304 (473)
Q Consensus 290 d~aLlR~GRfd~~i~ 304 (473)
+++|+. .-|.+-.
T Consensus 164 p~~l~e--~AD~VTe 176 (196)
T 1g5t_A 164 HRDILD--LADTVSE 176 (196)
T ss_dssp CHHHHH--HCSEEEE
T ss_pred cHHHHH--hCcceee
Confidence 566666 5555444
No 147
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.33 E-value=0.00015 Score=66.81 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+.|+.|+|.||||+|||++++.+++.+|..++.
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 346789999999999999999999999877665
No 148
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=97.32 E-value=0.00044 Score=71.59 Aligned_cols=82 Identities=15% Similarity=0.137 Sum_probs=51.8
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---------CCcEEeccccccc--------CCCCCh--------------
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKMG---------INPIMMSAGELES--------GNAGEP-------------- 201 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---------~~~i~vs~s~l~s--------~~~Ge~-------------- 201 (473)
++.+-..++|+||||+|||+|++.+|-..- -..++++...... ..+|-.
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~~vleni~~~~~~ 253 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPDDALNNVAYARAY 253 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECC
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChHhHhhcEEEeccC
Confidence 456667899999999999999998775432 2355555543210 001110
Q ss_pred -HHHHHHHHHHHHHHHHcCCceEEEecCCCCccc
Q 011983 202 -AKLIRQRYREAADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 202 -~~~ir~~f~~A~~~~~~~~p~ILfIDEiDal~~ 234 (473)
......+..++..++....|.+|+||++-.+..
T Consensus 254 ~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~ 287 (400)
T 3lda_A 254 NADHQLRLLDAAAQMMSESRFSLIVVDSVMALYR 287 (400)
T ss_dssp SHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC
T ss_pred ChHHHHHHHHHHHHHHHhcCCceEEecchhhhCc
Confidence 112223445555556678899999999988765
No 149
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.31 E-value=0.00013 Score=66.48 Aligned_cols=33 Identities=36% Similarity=0.533 Sum_probs=28.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|..|+|.|+||+|||++|+.+++.+|..++.+
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 356899999999999999999999999766543
No 150
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.31 E-value=0.00014 Score=66.87 Aligned_cols=35 Identities=23% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|+.|+|.|+||+|||++++.+++.+|..++..+
T Consensus 13 ~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 13 DQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp TTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 45678999999999999999999999988665543
No 151
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=97.30 E-value=0.00063 Score=71.21 Aligned_cols=38 Identities=11% Similarity=0.028 Sum_probs=29.9
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
|+.+-..++|.|+||+|||+++..+|... |.+++.++.
T Consensus 199 Gl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 199 GFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp SBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 56666789999999999999999988763 556666553
No 152
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.30 E-value=0.00015 Score=64.76 Aligned_cols=31 Identities=16% Similarity=0.075 Sum_probs=27.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+..++|.||||+|||++++.+|..++..++.
T Consensus 4 ~~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 4568999999999999999999999876553
No 153
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.30 E-value=0.00013 Score=64.27 Aligned_cols=30 Identities=33% Similarity=0.401 Sum_probs=26.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
+.|+|.||||+|||++|+.+ +.+|.+++.+
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 36889999999999999999 8899887654
No 154
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.29 E-value=0.00012 Score=65.77 Aligned_cols=29 Identities=17% Similarity=0.114 Sum_probs=26.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.++|.||||+|||++++.+|+.++++++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 58899999999999999999999987764
No 155
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.29 E-value=0.00011 Score=66.39 Aligned_cols=31 Identities=19% Similarity=0.282 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+..|+|.||||+||||+++.+++.+|.+++.
T Consensus 4 g~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 4 GQAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4678999999999999999999999876653
No 156
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.28 E-value=0.00011 Score=65.58 Aligned_cols=29 Identities=28% Similarity=0.237 Sum_probs=24.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH-HhCCCc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFA-KMGINP 185 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~-~lg~~~ 185 (473)
|..|+|.||||+|||++|+.+++ ..+..+
T Consensus 2 ~~~I~i~G~~GsGKST~a~~L~~~~~~~~~ 31 (181)
T 1ly1_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYN 31 (181)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEE
T ss_pred CeEEEEecCCCCCHHHHHHHHHhhcCCcEE
Confidence 67899999999999999999999 455443
No 157
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.27 E-value=0.00014 Score=68.43 Aligned_cols=34 Identities=18% Similarity=0.185 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..|..|+|.||||+|||++++.+++.+|..++.+
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4567899999999999999999999998776543
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.26 E-value=0.00012 Score=65.81 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
.|..|+|.|+||+|||++|+.+++.++.+++
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 4678999999999999999999999998876
No 159
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.26 E-value=0.00017 Score=69.16 Aligned_cols=34 Identities=18% Similarity=0.003 Sum_probs=29.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
++|..|+|.||||+|||++|+.+++.+|+.++.+
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 4688899999999999999999999998766543
No 160
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.25 E-value=0.00013 Score=65.74 Aligned_cols=26 Identities=15% Similarity=0.284 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+..|+|.||||+|||++++.+++.++
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46799999999999999999999987
No 161
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.23 E-value=0.00016 Score=64.37 Aligned_cols=31 Identities=13% Similarity=0.094 Sum_probs=27.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
+.|+|.|+||+|||++++.+++.+|.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 4589999999999999999999999877653
No 162
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=97.21 E-value=0.00049 Score=68.41 Aligned_cols=82 Identities=13% Similarity=0.164 Sum_probs=51.5
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---------------C----CCcEEeccccccc-C-------CCCC-----
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---------------G----INPIMMSAGELES-G-------NAGE----- 200 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---------------g----~~~i~vs~s~l~s-~-------~~Ge----- 200 (473)
++.+...++|+||||+|||++|..+|... | ...++++....+. . ..|-
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~~~g~~~~~~ 173 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAEHAGIDGQTV 173 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHHHHTCCHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHHHcCCCHHHH
Confidence 45666789999999999999999999763 2 3455565543210 0 0000
Q ss_pred ----------hHHHHHHHHHHHHHHHHc-CCceEEEecCCCCccc
Q 011983 201 ----------PAKLIRQRYREAADIIKK-GKMCCLFINDLDAGAG 234 (473)
Q Consensus 201 ----------~~~~ir~~f~~A~~~~~~-~~p~ILfIDEiDal~~ 234 (473)
....+.+++..+..+++. ..+.+|+||.+..+..
T Consensus 174 ~~~l~~~~~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~ 218 (322)
T 2i1q_A 174 LDNTFVARAYNSDMQMLFAEKIEDLIQEGNNIKLVVIDSLTSTFR 218 (322)
T ss_dssp HHTEEEEECSSHHHHHHHHHTHHHHHHTTCEEEEEEEECSSHHHH
T ss_pred hcCEEEEeCCCHHHHHHHHHHHHHHHhhccCccEEEEECcHHHHH
Confidence 011111233344445556 7899999999998864
No 163
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.21 E-value=0.00017 Score=65.36 Aligned_cols=39 Identities=23% Similarity=0.193 Sum_probs=31.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
+.++..++|.||||+||||+++.++...+...+.++..+
T Consensus 6 i~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~ 44 (191)
T 1zp6_A 6 DLGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDD 44 (191)
T ss_dssp CCTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccc
Confidence 456678999999999999999999998766666666543
No 164
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.21 E-value=0.00021 Score=67.65 Aligned_cols=34 Identities=15% Similarity=0.136 Sum_probs=29.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..+..|+|.|+||+|||++|+.+|+++++.++..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4457899999999999999999999999776554
No 165
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=97.20 E-value=0.001 Score=69.34 Aligned_cols=39 Identities=13% Similarity=-0.008 Sum_probs=30.5
Q ss_pred CCCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 152 PNVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 152 ~~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
.|..+-..++|.|+||+|||++|..+|... |.+++.++.
T Consensus 195 gGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 195 GTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred CCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 356667789999999999999999888762 556666554
No 166
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.19 E-value=0.00015 Score=67.99 Aligned_cols=32 Identities=38% Similarity=0.511 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.|..|+|.||||+|||++++.+|+.++..++.
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 45679999999999999999999999975543
No 167
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.16 E-value=0.00026 Score=62.76 Aligned_cols=30 Identities=20% Similarity=0.058 Sum_probs=27.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.|+||+|||++++.+++.+|.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 588999999999999999999999887653
No 168
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.16 E-value=0.0002 Score=67.10 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
+..|+|.|+||+|||++|+.+|+.+|++++.+
T Consensus 5 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 5 KHNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 35688999999999999999999999877654
No 169
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.15 E-value=0.00029 Score=68.02 Aligned_cols=33 Identities=18% Similarity=0.227 Sum_probs=29.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
+.++|.||||+|||++|+.+|++++..++.++.
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 358899999999999999999999988876654
No 170
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.14 E-value=0.0037 Score=66.79 Aligned_cols=25 Identities=24% Similarity=0.317 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
..++.+.|+|++|+|||+||+.+++
T Consensus 150 ~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 150 LDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHH
Confidence 3568899999999999999999997
No 171
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00027 Score=65.67 Aligned_cols=30 Identities=37% Similarity=0.386 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.||||+|||++|+.+++++|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 478899999999999999999998877654
No 172
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.13 E-value=0.00029 Score=65.36 Aligned_cols=30 Identities=30% Similarity=0.335 Sum_probs=26.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.||||+|||++|+.+++++|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 478899999999999999999999877654
No 173
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.12 E-value=0.00027 Score=66.48 Aligned_cols=33 Identities=30% Similarity=0.472 Sum_probs=27.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l 193 (473)
.|+|.||||+||+|+|+.||++.|++. ++.+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~--istGdl 34 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVH--ISTGDI 34 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEE--EEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeE--EcHHHH
Confidence 578889999999999999999998765 454444
No 174
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.07 E-value=0.00041 Score=62.10 Aligned_cols=32 Identities=22% Similarity=0.117 Sum_probs=27.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
....++|.||||+|||++++.++..+|..++.
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 34678999999999999999999999865543
No 175
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=97.05 E-value=0.00086 Score=65.55 Aligned_cols=29 Identities=17% Similarity=0.137 Sum_probs=24.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++.+-..++|.||||+|||+|++.+|...
T Consensus 31 ~l~~G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 31 GARGGEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp SBCTTCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 45556789999999999999999998873
No 176
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=97.05 E-value=0.00038 Score=56.49 Aligned_cols=51 Identities=16% Similarity=0.219 Sum_probs=42.9
Q ss_pred cCCHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 305 APTREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 305 ~P~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
.|+.++|.+||+.++++ .+++++.|++.+++|+|++|. ++|..+...++++
T Consensus 10 ~Pd~~~R~~IL~~~l~~~~l~~dvdl~~LA~~T~G~SGADL~---~l~~eAa~~alr~ 64 (86)
T 2krk_A 10 HPNEEARLDILKIHSRKMNLTRGINLRKIAELMPGASGAEVK---GVCTEAGMYALRE 64 (86)
T ss_dssp CCCHHHHHHHHHHHTTTSEECTTCCCHHHHHTCSSCCHHHHH---HHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHHcCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHH
Confidence 69999999999999876 467888999999999999998 7777776666554
No 177
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.04 E-value=0.00043 Score=63.83 Aligned_cols=37 Identities=19% Similarity=0.196 Sum_probs=29.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l 193 (473)
.++..++|.||+|+|||++++.++..+|..+ +++..+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~--i~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEF--AEADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEE--EEGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeE--Eccccc
Confidence 4567899999999999999999999997654 444443
No 178
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.00 E-value=0.0076 Score=69.23 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..++.+.|+|++|+|||+||+.+++.
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45678999999999999999999876
No 179
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.00059 Score=61.48 Aligned_cols=39 Identities=15% Similarity=0.128 Sum_probs=32.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
..+..+.|.|++|+|||++++.++..+ |.+++.++...+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHH
Confidence 345778899999999999999999997 988887775433
No 180
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.98 E-value=0.0017 Score=59.79 Aligned_cols=39 Identities=15% Similarity=0.160 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
.++..+.|.||+|+|||+++++++..+ |...+.++...+
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNV 64 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchh
Confidence 456789999999999999999999998 555345554443
No 181
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=96.98 E-value=0.0032 Score=67.29 Aligned_cols=25 Identities=28% Similarity=0.229 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
..++.++|+||+|+|||+||+.+++
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3467899999999999999999975
No 182
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.97 E-value=0.00048 Score=64.12 Aligned_cols=30 Identities=27% Similarity=0.391 Sum_probs=26.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.||||+|||++|+.+++.+|..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 478999999999999999999999877654
No 183
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.96 E-value=0.00064 Score=61.34 Aligned_cols=31 Identities=19% Similarity=0.354 Sum_probs=27.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
.|+|.|+||+|||++++.+++.+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 57899999999999999999998 88887664
No 184
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.95 E-value=0.0033 Score=60.99 Aligned_cols=28 Identities=21% Similarity=0.191 Sum_probs=23.7
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
++..-..++|+||||+|||+|+..++..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~ 53 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQ 53 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 3445568999999999999999999875
No 185
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.94 E-value=0.0006 Score=63.50 Aligned_cols=31 Identities=19% Similarity=0.309 Sum_probs=27.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+..+.|.||+|+||||+++.+++.+|++++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 4578999999999999999999999976653
No 186
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.94 E-value=0.0025 Score=57.66 Aligned_cols=39 Identities=10% Similarity=0.077 Sum_probs=29.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l 193 (473)
..+..++|.|+||+|||++++.++..++ ..+..++...+
T Consensus 11 ~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~ 52 (186)
T 2yvu_A 11 EKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWA 52 (186)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHH
Confidence 4567899999999999999999999864 34445554433
No 187
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.94 E-value=0.00047 Score=63.02 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=28.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh-CCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM-GINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i~vs 189 (473)
.++.|.|.|+||+||||+++.+++.+ |.+++.+.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 46789999999999999999999998 57776654
No 188
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.93 E-value=0.00052 Score=62.58 Aligned_cols=34 Identities=35% Similarity=0.516 Sum_probs=28.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|..|.|.|++|+|||++++.+++. |++++..+
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 45788999999999999999999998 87766433
No 189
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.92 E-value=0.00071 Score=64.39 Aligned_cols=32 Identities=25% Similarity=0.402 Sum_probs=28.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.|..++|.||||+||||+++.|++.+|...+.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 47789999999999999999999999886643
No 190
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.90 E-value=0.00035 Score=64.26 Aligned_cols=34 Identities=24% Similarity=0.188 Sum_probs=28.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..++.|+|.|+||+|||++++.+++.++...+.+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~~~~ 41 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNNVEV 41 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTTCCE
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcE
Confidence 4567899999999999999999999977654433
No 191
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.90 E-value=0.00043 Score=70.60 Aligned_cols=30 Identities=20% Similarity=0.162 Sum_probs=27.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..++|+||||+|||++++++|+.++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 468899999999999999999999988855
No 192
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.87 E-value=0.00043 Score=63.74 Aligned_cols=32 Identities=16% Similarity=0.102 Sum_probs=26.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPI 186 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i 186 (473)
+.|..|+|.|+||+|||++++.+++.++...+
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~~ 38 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALCAAGH 38 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHHHTTC
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHHHcCC
Confidence 35678999999999999999999998764433
No 193
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.0015 Score=59.23 Aligned_cols=31 Identities=29% Similarity=0.373 Sum_probs=26.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
.|.|.|++|+||||+++.+++.+ |.+++...
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~ 35 (197)
T 2z0h_A 2 FITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEee
Confidence 47899999999999999999998 98887554
No 194
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.85 E-value=0.00073 Score=64.73 Aligned_cols=40 Identities=28% Similarity=0.595 Sum_probs=32.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc--------EEecccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP--------IMMSAGELE 194 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~--------i~vs~s~l~ 194 (473)
..|..|.|.|+||+|||++|+.+++.+|.++ +.++..++.
T Consensus 20 ~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~ 67 (252)
T 1uj2_A 20 GEPFLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFY 67 (252)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGB
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCccc
Confidence 5678899999999999999999999999764 256666655
No 195
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.83 E-value=0.00062 Score=62.68 Aligned_cols=29 Identities=31% Similarity=0.566 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..+.|.||+|+||||+++.+++ +|.+++.
T Consensus 3 ~~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 3 YIVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 5688999999999999999998 8887764
No 196
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.83 E-value=0.00078 Score=61.64 Aligned_cols=28 Identities=25% Similarity=0.343 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
+..|+|.|+||+|||++++.+++.++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 5678999999999999999999998874
No 197
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.83 E-value=0.00046 Score=62.14 Aligned_cols=25 Identities=28% Similarity=0.066 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+.|+|.|+||+|||++++.+++.++
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3588999999999999999999876
No 198
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00077 Score=64.75 Aligned_cols=33 Identities=21% Similarity=0.240 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..|..+.|.||||+|||++++.+++.+|+.++.
T Consensus 7 ~~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d 39 (233)
T 3r20_A 7 SGSLVVAVDGPAGTGKSSVSRGLARALGARYLD 39 (233)
T ss_dssp --CCEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 346789999999999999999999999976653
No 199
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.82 E-value=0.0068 Score=63.50 Aligned_cols=71 Identities=14% Similarity=0.147 Sum_probs=48.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc-------------------cc-CCCCChHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL-------------------ES-GNAGEPAKLIRQRYREA 212 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l-------------------~s-~~~Ge~~~~ir~~f~~A 212 (473)
+|..+++.|++|+||||++..+|..+ |..+..+++... .. .....+...++..++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999998764 566655554321 11 11123444555555555
Q ss_pred HHHHHcCCceEEEecCCC
Q 011983 213 ADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 213 ~~~~~~~~p~ILfIDEiD 230 (473)
. ...+.+|+||..-
T Consensus 179 ~----~~~~DvVIIDTaG 192 (443)
T 3dm5_A 179 K----SKGVDIIIVDTAG 192 (443)
T ss_dssp H----HTTCSEEEEECCC
T ss_pred H----hCCCCEEEEECCC
Confidence 4 6778999999764
No 200
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.82 E-value=0.00072 Score=61.47 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=25.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.|.|.|+||+||||+++.+++.++..++.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~~ 30 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIFK 30 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEEC
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEEc
Confidence 47899999999999999999999986653
No 201
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.81 E-value=0.00063 Score=62.43 Aligned_cols=30 Identities=23% Similarity=0.341 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|.|.||+|+|||++++.+++ +|++++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 588999999999999999999 887766544
No 202
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.81 E-value=0.00089 Score=61.22 Aligned_cols=31 Identities=29% Similarity=0.299 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.|.|.|++|+|||++++.+++.+|++++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 7899999999999999999999998877543
No 203
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.80 E-value=0.00074 Score=63.54 Aligned_cols=30 Identities=33% Similarity=0.386 Sum_probs=26.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|+|.||||+|||++++.+++.+|..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 478999999999999999999998765443
No 204
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.79 E-value=0.002 Score=59.73 Aligned_cols=40 Identities=13% Similarity=0.125 Sum_probs=31.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CCcEEecccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGELE 194 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg----~~~i~vs~s~l~ 194 (473)
..+..++|.|+||+|||++++.+++.++ .+++.++...+.
T Consensus 23 ~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r 66 (211)
T 1m7g_A 23 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIR 66 (211)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHh
Confidence 4567899999999999999999999764 557777654443
No 205
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.79 E-value=0.00081 Score=67.70 Aligned_cols=36 Identities=14% Similarity=0.163 Sum_probs=31.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s 191 (473)
.|+.++|.||+|+|||++++.+|++++..++.++.-
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELISVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEEeccch
Confidence 456899999999999999999999999888777543
No 206
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.77 E-value=0.0073 Score=60.14 Aligned_cols=72 Identities=17% Similarity=0.323 Sum_probs=44.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc--------------------ccCCCCChHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL--------------------ESGNAGEPAKLIRQRYRE 211 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l--------------------~s~~~Ge~~~~ir~~f~~ 211 (473)
++|..++|.||+|+|||+++..+|..+ |-.+..+..... .....+++...+...+..
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~~a~eqL~~~~~~~gl~~~~~~s~~~~~~v~~~al~~ 181 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRAAAIEQLKIWGERVGATVISHSEGADPAAVAFDAVAH 181 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCHHHHHHHHHHHHHHTCEEECCSTTCCHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 567899999999999999999999874 444443332211 001122333333333333
Q ss_pred HHHHHHcCCceEEEecCCC
Q 011983 212 AADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 212 A~~~~~~~~p~ILfIDEiD 230 (473)
+. ...+.+|+||+.-
T Consensus 182 a~----~~~~dvvIiDtpg 196 (306)
T 1vma_A 182 AL----ARNKDVVIIDTAG 196 (306)
T ss_dssp HH----HTTCSEEEEEECC
T ss_pred HH----hcCCCEEEEECCC
Confidence 33 6788999999764
No 207
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.76 E-value=0.0028 Score=63.10 Aligned_cols=38 Identities=16% Similarity=-0.097 Sum_probs=29.4
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||++|..+|... |.+.+.++.
T Consensus 64 Gl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 64 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp SBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 56666789999999999999999998763 345555543
No 208
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.74 E-value=0.0014 Score=60.88 Aligned_cols=28 Identities=29% Similarity=0.330 Sum_probs=24.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+++..+.|.||+|+|||++++.++..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3567889999999999999999999875
No 209
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.70 E-value=0.0008 Score=62.09 Aligned_cols=35 Identities=20% Similarity=0.240 Sum_probs=29.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCCcEE
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM-GINPIM 187 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i~ 187 (473)
.++++..++|.||||+|||++++.+++.+ ++.++.
T Consensus 17 ~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~ 52 (207)
T 2qt1_A 17 RGSKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVIS 52 (207)
T ss_dssp CSCCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEE
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEe
Confidence 45677889999999999999999999987 555443
No 210
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.69 E-value=0.0011 Score=68.68 Aligned_cols=37 Identities=22% Similarity=0.186 Sum_probs=30.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l 193 (473)
..|..|+|.|+||+|||++|+.+++.+++.+ ++...+
T Consensus 256 ~~~~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 256 PNPEVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp SSCCEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 4578899999999999999999999987654 444444
No 211
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.69 E-value=0.0011 Score=61.76 Aligned_cols=32 Identities=34% Similarity=0.481 Sum_probs=27.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
.|..|.|.|++|+|||++++.+++ +|.+++..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 467899999999999999999998 88766544
No 212
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.68 E-value=0.0018 Score=69.27 Aligned_cols=31 Identities=13% Similarity=0.215 Sum_probs=26.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
..|..|+|.|+||+|||++|+.+++.++..+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~ 63 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIG 63 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcC
Confidence 4567899999999999999999999985443
No 213
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=96.68 E-value=0.0047 Score=64.60 Aligned_cols=38 Identities=16% Similarity=-0.097 Sum_probs=30.1
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||++|-.+|... |.+++.++.
T Consensus 193 Gl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 193 GYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp SBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred CCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 56666789999999999999999888774 556666554
No 214
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=96.67 E-value=0.0067 Score=64.07 Aligned_cols=38 Identities=11% Similarity=-0.035 Sum_probs=30.2
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||++|..+|... |.+++.++.
T Consensus 238 Gl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 238 GARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred ccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 45566789999999999999999998874 556666654
No 215
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.67 E-value=0.013 Score=63.20 Aligned_cols=72 Identities=10% Similarity=0.141 Sum_probs=48.7
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC--CCccccccCCCc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 299 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~--~Ld~aLlR~GRf 299 (473)
.+|+|||+..++.... ..+...|..|.. .-..-+|-+|++|.+|+ .|+..++. -|
T Consensus 345 ivvVIDE~~~L~~~~~---------~~~~~~L~~Iar------------~GRa~GIhLIlaTQRPs~d~I~~~Ira--n~ 401 (574)
T 2iut_A 345 IVVVVDEFADMMMIVG---------KKVEELIARIAQ------------KARAAGIHLILATQRPSVDVITGLIKA--NI 401 (574)
T ss_dssp EEEEESCCTTHHHHTC---------HHHHHHHHHHHH------------HCTTTTEEEEEEESCCCTTTSCHHHHH--TC
T ss_pred EEEEEeCHHHHhhhhh---------HHHHHHHHHHHH------------HHhhCCeEEEEEecCcccccccHHHHh--hh
Confidence 5899999998865311 123334444333 13467899999999998 78888777 56
Q ss_pred eEEEe--cCCHHHHHHHHH
Q 011983 300 EKFYW--APTREDRIGVCS 316 (473)
Q Consensus 300 d~~i~--~P~~eeR~~Il~ 316 (473)
...|. +.+..+...|+.
T Consensus 402 ~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 402 PTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp CEEEEECCSCHHHHHHHHS
T ss_pred ccEEEEEcCCHHHHHHhcC
Confidence 66555 577777777774
No 216
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.64 E-value=0.001 Score=61.79 Aligned_cols=32 Identities=16% Similarity=0.171 Sum_probs=28.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
|..+.|.|++|+|||++++.+++.+|++++..
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 46789999999999999999999999877654
No 217
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.64 E-value=0.0038 Score=59.39 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s 191 (473)
.++++||+|+|||.++.+++...+...+.+...
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~ 142 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 388999999999999999999987766666544
No 218
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=96.63 E-value=0.0021 Score=57.84 Aligned_cols=22 Identities=23% Similarity=0.246 Sum_probs=19.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCEL 176 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAka 176 (473)
.....++|.||+|+|||+++++
T Consensus 7 ~~gei~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 7 PELSLVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp ESSEEEEEECCTTSCHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHH
Confidence 3456789999999999999994
No 219
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.61 E-value=0.0018 Score=65.92 Aligned_cols=69 Identities=12% Similarity=0.120 Sum_probs=41.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc-cccc---------cCCCCChHHHHHHHHHHHHHHHHcCCceE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA-GELE---------SGNAGEPAKLIRQRYREAADIIKKGKMCC 223 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~-s~l~---------s~~~Ge~~~~ir~~f~~A~~~~~~~~p~I 223 (473)
..+++.||+|+|||++.++++..+ +-.++.+.. .++. ...++.....+...+..|. ...|.+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL----~~~Pdv 199 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSAL----REDPDI 199 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHT----TSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHh----hhCcCE
Confidence 368999999999999999998874 222222211 1111 0011111122333444444 889999
Q ss_pred EEecCCC
Q 011983 224 LFINDLD 230 (473)
Q Consensus 224 LfIDEiD 230 (473)
|++||+-
T Consensus 200 illDEp~ 206 (356)
T 3jvv_A 200 ILVGEMR 206 (356)
T ss_dssp EEESCCC
T ss_pred EecCCCC
Confidence 9999983
No 220
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.59 E-value=0.0013 Score=61.14 Aligned_cols=33 Identities=30% Similarity=0.601 Sum_probs=28.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
-..|.|.|++|+|||++++.+++.+|++++..+
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 457889999999999999999999898776544
No 221
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=96.59 E-value=0.018 Score=55.01 Aligned_cols=34 Identities=15% Similarity=0.139 Sum_probs=26.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
-..+++.|+||+|||+++-.+|..+ |..++.+..
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~ 42 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVV 42 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEe
Confidence 4679999999999999998888773 666554443
No 222
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.58 E-value=0.00084 Score=65.31 Aligned_cols=72 Identities=18% Similarity=0.259 Sum_probs=42.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC---CcEEecccccc-----------cCCCCChHHHHHHHHHHHHHHHHcCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI---NPIMMSAGELE-----------SGNAGEPAKLIRQRYREAADIIKKGK 220 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~---~~i~vs~s~l~-----------s~~~Ge~~~~ir~~f~~A~~~~~~~~ 220 (473)
++-..++|.||.|+|||++.++++..... --+.+....+. ...+|.....++..+..|. ...
T Consensus 23 ~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~~~~~~~v~q~~~gl~~~~l~~~la~aL----~~~ 98 (261)
T 2eyu_A 23 RKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVFKHKKSIVNQREVGEDTKSFADALRAAL----RED 98 (261)
T ss_dssp CSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHH----HHC
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeecCCcceeeeHHHhCCCHHHHHHHHHHHH----hhC
Confidence 44457899999999999999999987421 11212111110 0011111123344455554 568
Q ss_pred ceEEEecCCC
Q 011983 221 MCCLFINDLD 230 (473)
Q Consensus 221 p~ILfIDEiD 230 (473)
|.+|++||.-
T Consensus 99 p~illlDEp~ 108 (261)
T 2eyu_A 99 PDVIFVGEMR 108 (261)
T ss_dssp CSEEEESCCC
T ss_pred CCEEEeCCCC
Confidence 9999999983
No 223
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.57 E-value=0.0035 Score=57.78 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=35.0
Q ss_pred hHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 136 FMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 136 ~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
+++.++.++.+. ....+..+.|.||+|+|||++++.++..+ +.+++..+
T Consensus 6 ~~~~l~~~~~~~-----~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 6 RIDFLCKTILAI-----KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp HHHHHHHHHHTS-----CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHh-----ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 445555555432 24567889999999999999999999875 55555443
No 224
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.56 E-value=0.0013 Score=64.44 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=28.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEe
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMM 188 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~v 188 (473)
..|..|+|.|+||+|||++|+.++ ++|++++..
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 457889999999999999999999 688766544
No 225
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.56 E-value=0.00098 Score=65.05 Aligned_cols=30 Identities=33% Similarity=0.303 Sum_probs=25.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-CCCcE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM-GINPI 186 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l-g~~~i 186 (473)
|..|+|.|+||+|||++++.+++.+ +..++
T Consensus 2 ~~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 2 KKIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 5679999999999999999999974 65544
No 226
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.52 E-value=0.0019 Score=61.07 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
...+..+.|.|++|+|||++++.+++.+|++++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 3556789999999999999999999999987654
No 227
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.50 E-value=0.0043 Score=62.74 Aligned_cols=36 Identities=22% Similarity=0.215 Sum_probs=30.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
+.++.|+|.||+|+|||+|+..+|++++..+|..+.
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 345688999999999999999999999877766544
No 228
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.46 E-value=0.002 Score=61.85 Aligned_cols=32 Identities=16% Similarity=0.335 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
+...|.|.||+|+|||++++.+|+.+|+.++.
T Consensus 26 ~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 26 IAPVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp TSCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 34578899999999999999999999987653
No 229
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=96.46 E-value=0.0025 Score=64.45 Aligned_cols=38 Identities=11% Similarity=-0.062 Sum_probs=29.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEecc
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMSA 190 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~ 190 (473)
|..+-..++|.|+||+|||+++..+|.. .|.++++++.
T Consensus 42 Gl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 42 GFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp SBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 5566678999999999999999999887 3555555543
No 230
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.45 E-value=0.0016 Score=63.08 Aligned_cols=32 Identities=16% Similarity=0.157 Sum_probs=28.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
..|.|.||+|+|||++++.+|+.+|.+|+..+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d 80 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCD 80 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCc
Confidence 46889999999999999999999999877643
No 231
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.40 E-value=0.0034 Score=58.70 Aligned_cols=27 Identities=19% Similarity=0.201 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.++.+.|.||+|+|||+|++++++...
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 456788999999999999999998864
No 232
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.36 E-value=0.002 Score=59.51 Aligned_cols=28 Identities=21% Similarity=0.183 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..++.++|.||||+|||++++.+++.++
T Consensus 10 ~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 10 ARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4567789999999999999999999875
No 233
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=96.33 E-value=0.0044 Score=50.23 Aligned_cols=49 Identities=14% Similarity=0.102 Sum_probs=40.0
Q ss_pred CHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 307 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
+.++|.+||+.++++ .+++.+.|++.+++|+|+++. ++|..+...++++
T Consensus 2 d~~~R~~Il~~~~~~~~~~~dvdl~~lA~~t~G~SGADl~---~l~~eAa~~a~r~ 54 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVERGIRWELISRLCPNSTGAELR---SVCTEAGMFAIRA 54 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBCSCCCHHHHHHTCSSCCHHHHH---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCCCccCHHHHHHHcCCCcHHHHH---HHHHHHHHHHHHh
Confidence 567899999988876 467788999999999999988 7887777776665
No 234
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.31 E-value=0.013 Score=61.22 Aligned_cols=36 Identities=25% Similarity=0.358 Sum_probs=28.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
.+|..+++.||+|+||||++..+|..+ |..+..+++
T Consensus 95 ~~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 95 KLPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 357899999999999999999998764 556555553
No 235
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.30 E-value=0.0025 Score=58.11 Aligned_cols=27 Identities=22% Similarity=0.315 Sum_probs=24.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++..+.|.||+|+|||++++.++..+
T Consensus 4 ~~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 4 EKGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 456789999999999999999999876
No 236
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.23 E-value=0.0034 Score=62.83 Aligned_cols=36 Identities=14% Similarity=0.178 Sum_probs=30.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
..|+.++|.||+|+|||+||..+|+.++..++..+.
T Consensus 8 ~~~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 8 SLPKAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred CCCcEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 457788999999999999999999999877666554
No 237
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.21 E-value=0.0027 Score=58.50 Aligned_cols=32 Identities=25% Similarity=0.567 Sum_probs=26.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC--CCcE
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG--INPI 186 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg--~~~i 186 (473)
+++..+.|.||+|+||||+++.++..++ +.++
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v 37 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALL 37 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEE
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEE
Confidence 4567899999999999999999999987 5444
No 238
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.17 E-value=0.0018 Score=66.24 Aligned_cols=27 Identities=19% Similarity=0.202 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++...++|.||+|+|||++.++++...
T Consensus 134 ~~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 134 RKMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 445678999999999999999999874
No 239
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=96.15 E-value=0.011 Score=64.46 Aligned_cols=38 Identities=16% Similarity=0.143 Sum_probs=33.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAGEL 193 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s~l 193 (473)
.+..|+|.|+||+|||++|+++++.+ |.+++.++...+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHh
Confidence 57789999999999999999999998 999988875444
No 240
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.13 E-value=0.006 Score=56.45 Aligned_cols=29 Identities=21% Similarity=0.250 Sum_probs=25.5
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+++..+.|.||+|+|||||+++|+..+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 35667899999999999999999999874
No 241
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.10 E-value=0.0074 Score=60.57 Aligned_cols=39 Identities=38% Similarity=0.537 Sum_probs=32.0
Q ss_pred HHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 144 ITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 144 i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+...++.....+.|..+.|.||+|+||||+++.++..++
T Consensus 79 ~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 79 ATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred HHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455555567899999999999999999999999875
No 242
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=96.09 E-value=0.0032 Score=60.37 Aligned_cols=30 Identities=33% Similarity=0.509 Sum_probs=26.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
.-+.|.||||+|||++|+.|++.+|++.+.
T Consensus 9 ~~~~~~G~pGsGKsT~a~~L~~~~g~~~is 38 (230)
T 3gmt_A 9 MRLILLGAPGAGKGTQANFIKEKFGIPQIS 38 (230)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCEEC
T ss_pred cceeeECCCCCCHHHHHHHHHHHhCCCeee
Confidence 357789999999999999999999987654
No 243
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.02 E-value=0.0048 Score=57.44 Aligned_cols=30 Identities=17% Similarity=0.182 Sum_probs=27.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
..|.|.||+|||||++++.+|+.+|++|+.
T Consensus 7 ~iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 7 IIIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 478999999999999999999999999874
No 244
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=96.01 E-value=0.032 Score=59.33 Aligned_cols=36 Identities=19% Similarity=0.292 Sum_probs=28.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
..|..|+|.|+||+|||+++..+|..+ |..+..+++
T Consensus 99 ~~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 99 GKQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp S--EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 457889999999999999999999764 666666655
No 245
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.01 E-value=0.0063 Score=63.55 Aligned_cols=84 Identities=13% Similarity=0.056 Sum_probs=56.0
Q ss_pred ceEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEe---------cC---CCCC
Q 011983 221 MCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVT---------GN---DFST 288 (473)
Q Consensus 221 p~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaT---------TN---~~~~ 288 (473)
|.|+||||+|.+-. ...+.|+..++ ++..+++|++| |+ .+..
T Consensus 296 ~~VliIDEa~~l~~-------------~a~~aLlk~lE-------------e~~~~~~il~tn~~~~~i~~~~~~~~~~~ 349 (456)
T 2c9o_A 296 PGVLFVDEVHMLDI-------------ECFTYLHRALE-------------SSIAPIVIFASNRGNCVIRGTEDITSPHG 349 (456)
T ss_dssp ECEEEEESGGGCBH-------------HHHHHHHHHTT-------------STTCCEEEEEECCSEEECBTTSSCEEETT
T ss_pred ceEEEEechhhcCH-------------HHHHHHHHHhh-------------ccCCCEEEEecCCcccccccccccccccc
Confidence 47999999998731 34466777665 33445544455 32 2678
Q ss_pred CccccccCCCceEEEe-cCCHHHHHHHHHhhcCC--CCCCHHHHHHH
Q 011983 289 LYAPLIRDGRMEKFYW-APTREDRIGVCSGIFRT--DNVPKEDIVKL 332 (473)
Q Consensus 289 Ld~aLlR~GRfd~~i~-~P~~eeR~~Il~~~l~~--~~v~~~~l~~l 332 (473)
|++.+++ ||..+.+ .|+.++..+|++..+.. ..++.+.+..+
T Consensus 350 l~~~i~s--R~~~~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i 394 (456)
T 2c9o_A 350 IPLDLLD--RVMIIRTMLYTPQEMKQIIKIRAQTEGINISEEALNHL 394 (456)
T ss_dssp CCHHHHT--TEEEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHH
T ss_pred CChhHHh--hcceeeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 8999999 9988544 47999999999877643 33455544333
No 246
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.00 E-value=0.0065 Score=60.16 Aligned_cols=38 Identities=26% Similarity=0.433 Sum_probs=30.0
Q ss_pred HHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 145 TKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 145 ~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+.++.......+..+.|.||+|+||||+++.++..++
T Consensus 68 ~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 68 LEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp HHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred HHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34455444446678899999999999999999999876
No 247
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=95.99 E-value=0.0042 Score=62.92 Aligned_cols=33 Identities=24% Similarity=0.192 Sum_probs=28.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
++.|+|.||+|+|||++|+.+|+.++..++.++
T Consensus 7 ~~lI~I~GptgSGKTtla~~La~~l~~~iis~D 39 (340)
T 3d3q_A 7 PFLIVIVGPTASGKTELSIEVAKKFNGEIISGD 39 (340)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTEEEEECC
T ss_pred CceEEEECCCcCcHHHHHHHHHHHcCCceeccc
Confidence 357899999999999999999999986555544
No 248
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=95.98 E-value=0.0049 Score=55.78 Aligned_cols=26 Identities=19% Similarity=0.253 Sum_probs=23.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
...+.|.||+|+|||+|++.++....
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 45788999999999999999999764
No 249
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=95.96 E-value=0.0044 Score=56.09 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..++|.||+|+|||++++.++...+
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS
T ss_pred eEEEEECCCCCcHHHHHHHHhcccC
Confidence 3578999999999999999998654
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=95.93 E-value=0.0052 Score=55.96 Aligned_cols=33 Identities=18% Similarity=0.189 Sum_probs=26.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
+...+.|.||+|+||||+++.++.... .+.+..
T Consensus 6 ~g~ii~l~Gp~GsGKSTl~~~L~~~~~--~~~~~~ 38 (205)
T 3tr0_A 6 KANLFIISAPSGAGKTSLVRALVKALA--EIKISI 38 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSS--SEEECC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCC--CeEEec
Confidence 346788999999999999999999853 344443
No 251
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=95.85 E-value=0.012 Score=63.13 Aligned_cols=64 Identities=16% Similarity=0.096 Sum_probs=40.9
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEeccccc
Q 011983 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGEL 193 (473)
Q Consensus 129 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l 193 (473)
+..+|+.|+-..+..+.+...... .+.+..|+|.|+||+|||++|+.+++.++ .++..++...+
T Consensus 345 g~~~p~~~~r~eV~~~lr~~~~~~-~~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~i 411 (546)
T 2gks_A 345 GRKLPEWFTRPEVAEILAETYVPK-HKQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVV 411 (546)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHH
T ss_pred CCCCCccccchhHHHHHHHhhccc-cccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHh
Confidence 333444444334445555443211 24567899999999999999999999864 45666665443
No 252
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.77 E-value=0.038 Score=58.68 Aligned_cols=24 Identities=17% Similarity=0.163 Sum_probs=20.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHH
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELV 177 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaI 177 (473)
+.+-..++|.||+|+|||+|++.+
T Consensus 36 i~~Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 36 LPIGRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CCCCeEEEEEcCCCCCHHHHHHHH
Confidence 455578999999999999999994
No 253
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.75 E-value=0.012 Score=57.95 Aligned_cols=29 Identities=31% Similarity=0.516 Sum_probs=26.2
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+.|..|.|.||+|+|||++++.|+..++
T Consensus 28 ~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 28 NKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp CCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 46788999999999999999999999875
No 254
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=95.74 E-value=0.048 Score=56.83 Aligned_cols=37 Identities=19% Similarity=0.220 Sum_probs=30.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~s 191 (473)
++|+.+++.|++|+|||+++-.+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 468899999999999999999998764 7777766664
No 255
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=95.74 E-value=0.0065 Score=60.94 Aligned_cols=34 Identities=15% Similarity=0.172 Sum_probs=28.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEecc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMSA 190 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~ 190 (473)
++.++|.||+|+|||+|+..+|+.++..++..+.
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 36 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDS 36 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTTTEEEEECCG
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhCccceeecCc
Confidence 4568899999999999999999998866555443
No 256
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.73 E-value=0.0053 Score=55.75 Aligned_cols=26 Identities=31% Similarity=0.308 Sum_probs=22.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
|..+.|.||+|+|||++++.++....
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35688999999999999999998864
No 257
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.62 E-value=0.017 Score=62.31 Aligned_cols=39 Identities=8% Similarity=0.055 Sum_probs=32.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC----CCcEEeccccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG----INPIMMSAGEL 193 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg----~~~i~vs~s~l 193 (473)
+.+..|+|.|+||+|||++|+++++.++ .+++.++...+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~i 436 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTV 436 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHH
Confidence 5678899999999999999999999976 77777766543
No 258
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.58 E-value=0.0091 Score=56.59 Aligned_cols=29 Identities=17% Similarity=0.291 Sum_probs=25.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
.....|.|.||||+||||+++.+++.++.
T Consensus 24 ~~g~~i~i~G~~GsGKsT~~~~l~~~l~~ 52 (229)
T 4eaq_A 24 AMSAFITFEGPEGSGKTTVINEVYHRLVK 52 (229)
T ss_dssp CCCEEEEEECCTTSCHHHHHHHHHHHHTT
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHhc
Confidence 45678889999999999999999999863
No 259
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=95.58 E-value=0.0081 Score=60.28 Aligned_cols=70 Identities=11% Similarity=0.064 Sum_probs=43.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecccc-cccC-------CCCChHHHHHHHHHHHHHHHHcCCceEEEec
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-------NAGEPAKLIRQRYREAADIIKKGKMCCLFIN 227 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s~-l~s~-------~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfID 227 (473)
..++|.||+|+|||+++++++..... ..+.+.... +.-. ++.......+..+..|. ...|.+|++|
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL----~~~p~ilild 247 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCL----RMRPDRIILG 247 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHT----TSCCSEEEEC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHh----hhCCCEEEEc
Confidence 46899999999999999999998532 233333321 1100 11001122334555555 7889999999
Q ss_pred CCCC
Q 011983 228 DLDA 231 (473)
Q Consensus 228 EiDa 231 (473)
|.-.
T Consensus 248 E~~~ 251 (330)
T 2pt7_A 248 ELRS 251 (330)
T ss_dssp CCCS
T ss_pred CCCh
Confidence 9753
No 260
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.57 E-value=0.0087 Score=56.85 Aligned_cols=31 Identities=35% Similarity=0.714 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
+..+..+.|.||.|+||||+++.++..+|..
T Consensus 22 i~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 22 SMRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp -CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 4566789999999999999999999988754
No 261
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=95.56 E-value=0.017 Score=53.51 Aligned_cols=32 Identities=16% Similarity=-0.037 Sum_probs=25.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEe
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMM 188 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~v 188 (473)
-+..+++||+|+|||+.+-.+++.. |..++.+
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4688899999999999888887774 6655554
No 262
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=95.56 E-value=0.0091 Score=61.82 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=28.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
+++.|+|.||+|+|||+|+..+|+.++..++..+
T Consensus 1 ~~~~i~i~GptgsGKttla~~La~~~~~~iis~D 34 (409)
T 3eph_A 1 SKKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSD 34 (409)
T ss_dssp CCEEEEEEECSSSSHHHHHHHHHHHHTEEEEECC
T ss_pred CCcEEEEECcchhhHHHHHHHHHHHCCCeEeecC
Confidence 3567889999999999999999999987665543
No 263
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.55 E-value=0.017 Score=60.51 Aligned_cols=31 Identities=13% Similarity=0.252 Sum_probs=26.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
..|..|+|.|.||+|||++++.+++.++..+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~ 67 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIG 67 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTT
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccC
Confidence 4577899999999999999999999976443
No 264
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.54 E-value=0.059 Score=57.39 Aligned_cols=72 Identities=6% Similarity=0.118 Sum_probs=45.5
Q ss_pred eEEEecCCCCccccCCCCCccchhhHHHHHHHHHhhcCCCcccCCCCcccCCCCCceEEEecCCCC--CCccccccCCCc
Q 011983 222 CCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNQEENPRVPIIVTGNDFS--TLYAPLIRDGRM 299 (473)
Q Consensus 222 ~ILfIDEiDal~~~r~~~~~~~~~~~~v~~~Ll~lld~~~~v~l~g~~~~~~~~~V~VIaTTN~~~--~Ld~aLlR~GRf 299 (473)
-+|+|||+..++... ...+...+..|.. ....-++.+|++|.+++ .|+..++. -+
T Consensus 299 ivlvIDE~~~ll~~~---------~~~~~~~l~~Lar------------~gRa~GI~LIlaTQrp~~dvl~~~i~~--n~ 355 (512)
T 2ius_A 299 IVVLVDEFADLMMTV---------GKKVEELIARLAQ------------KARAAGIHLVLATQRPSVDVITGLIKA--NI 355 (512)
T ss_dssp EEEEEETHHHHHHHH---------HHHHHHHHHHHHH------------HCGGGTEEEEEEESCCCTTTSCHHHHH--HC
T ss_pred EEEEEeCHHHHHhhh---------hHHHHHHHHHHHH------------HhhhCCcEEEEEecCCccccccHHHHh--hc
Confidence 389999997765321 1123333433332 01234788999999987 57777766 56
Q ss_pred eEEEe--cCCHHHHHHHHH
Q 011983 300 EKFYW--APTREDRIGVCS 316 (473)
Q Consensus 300 d~~i~--~P~~eeR~~Il~ 316 (473)
...+. +.+..+...|+.
T Consensus 356 ~~RI~lrv~s~~dsr~ilg 374 (512)
T 2ius_A 356 PTRIAFTVSSKIDSRTILD 374 (512)
T ss_dssp CEEEEECCSSHHHHHHHHS
T ss_pred CCeEEEEcCCHHHHHHhcC
Confidence 55444 678888888775
No 265
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.52 E-value=0.009 Score=56.72 Aligned_cols=31 Identities=23% Similarity=0.229 Sum_probs=28.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEE
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIM 187 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~ 187 (473)
...|.|.|++|||||++++.+|+.+|++|+.
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 4689999999999999999999999999864
No 266
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=95.52 E-value=0.028 Score=58.06 Aligned_cols=78 Identities=12% Similarity=0.131 Sum_probs=46.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEeccc---------------ccccCCCCCh-HHHHH---HHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGEP-AKLIR---QRYREA 212 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s---------------~l~s~~~Ge~-~~~ir---~~f~~A 212 (473)
-.-++|.||+|+|||+|++.|++.. ++.++.+-.+ .+......++ ...++ .....|
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i~~~~~~v~~I~~lIGER~~Ev~~~~~~~~~~vV~atadep~~~r~~~a~~alt~A 253 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSIAYNHPDCVLMVLLIDERPEEVTEMQRLVKGEVVASTFDEPASRHVQVAEMVIEKA 253 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHHHHHCTTSEEEEEEESSCHHHHHHHHTTCSSEEEEECTTSCHHHHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHHhhcCCCeeEEEEEecCChHHHHHHHHHhCeEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 3468899999999999999999864 3334333222 1111112222 22222 122334
Q ss_pred HHHHHcCCceEEEecCCCCccc
Q 011983 213 ADIIKKGKMCCLFINDLDAGAG 234 (473)
Q Consensus 213 ~~~~~~~~p~ILfIDEiDal~~ 234 (473)
......++..+||+|++...+.
T Consensus 254 Eyfrd~G~dVLil~DslTR~A~ 275 (422)
T 3ice_A 254 KRLVEHKKDVIILLDSITRLAR 275 (422)
T ss_dssp HHHHHTSCEEEEEEECHHHHHH
T ss_pred HHHHhcCCCEEEEEeCchHHHH
Confidence 4444478899999999987653
No 267
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.45 E-value=0.075 Score=53.28 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=24.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+|..+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 567899999999999999999999874
No 268
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=95.41 E-value=0.011 Score=62.97 Aligned_cols=54 Identities=13% Similarity=-0.045 Sum_probs=39.4
Q ss_pred CCCCChhhHHHHHHHHHHhhhcCCCCCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 129 GLYIAPAFMDKVVVHITKNFLNLPNVKVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 129 ~~~i~~~~~d~~~~~i~k~~l~~~~~~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
+..+|+.|+-..+..+++.+.... .+.+..|.|.|++|||||++++++|+.++.
T Consensus 368 G~~~P~~f~rpeV~~vLr~~~~~~-~~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 368 GGEIPEWFSYPEVVKILRESNPPR-PKQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp TCCCCTTTSCHHHHHHHHHHSCCG-GGCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred CCCCCccccChhhHHHHHHhcccc-cccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 444566666666666666644221 245578999999999999999999999985
No 269
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.38 E-value=0.0051 Score=56.41 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.|.|.||+|+||||+++.+++.++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999975
No 270
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=95.36 E-value=0.015 Score=61.35 Aligned_cols=23 Identities=26% Similarity=0.645 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++|+||+|+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58899999999999999988764
No 271
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.34 E-value=0.016 Score=53.57 Aligned_cols=26 Identities=31% Similarity=0.278 Sum_probs=22.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
|+|.||+|+|||+|++.+.++..-.|
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 78999999999999999998865433
No 272
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.32 E-value=0.0062 Score=60.00 Aligned_cols=39 Identities=13% Similarity=0.192 Sum_probs=27.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC---CCcEEecccccc
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG---INPIMMSAGELE 194 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg---~~~i~vs~s~l~ 194 (473)
.+..|.|.||+|+|||++|+.+++.++ ..+..++...+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 456799999999999999999999876 445555655443
No 273
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=95.28 E-value=0.057 Score=50.35 Aligned_cols=36 Identities=19% Similarity=-0.034 Sum_probs=27.8
Q ss_pred CCCcEEEEEcCCCCcHH-HHHHHHHHH--hCCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKS-FQCELVFAK--MGINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT-~lAkaIA~~--lg~~~i~vs~ 190 (473)
..-...++|||.|+||| .|.+++.+. .+..++.+..
T Consensus 18 ~~g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp 56 (195)
T 1w4r_A 18 TRGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKY 56 (195)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CceEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcc
Confidence 34578899999999999 889998776 4666666653
No 274
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.22 E-value=0.0094 Score=54.93 Aligned_cols=27 Identities=26% Similarity=0.294 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+...+.|.||+|+|||+|++.++....
T Consensus 3 ~g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 3 GPRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp --CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 345688999999999999999998764
No 275
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=95.21 E-value=0.012 Score=55.51 Aligned_cols=26 Identities=31% Similarity=0.270 Sum_probs=24.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
|+.|.|.|++|+|||++++.+++.+.
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 67899999999999999999999983
No 276
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=95.20 E-value=0.098 Score=51.59 Aligned_cols=34 Identities=21% Similarity=0.309 Sum_probs=27.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEecc
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSA 190 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~ 190 (473)
+..+++.|++|+|||+++..+|..+ |..+..++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 7789999999999999999999774 555555444
No 277
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=95.19 E-value=0.0051 Score=48.95 Aligned_cols=47 Identities=23% Similarity=0.217 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHH
Q 011983 307 TREDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEV 356 (473)
Q Consensus 307 ~~eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av 356 (473)
+.++|.+||+.++++ .+++.+.+++.+++|+|+++. ++|..+...++
T Consensus 2 d~~~R~~Il~~~l~~~~~~~~vdl~~la~~t~G~SGADi~---~l~~eA~~~a~ 52 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLSEEVDLEDYVARPDKISGADIN---SICQESGMLAV 52 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBCTTCCTHHHHTSSCCCCHHHHH---HHHHHHHHGGG
T ss_pred CHHHHHHHHHHHhCCCCCCcccCHHHHHHHcCCCCHHHHH---HHHHHHHHHHH
Confidence 678999999998876 356777888888898888887 66655544443
No 278
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.16 E-value=0.051 Score=53.48 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+..+.+.|++|+|||+++..+|..+
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57788899999999999999999873
No 279
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.12 E-value=0.071 Score=53.20 Aligned_cols=36 Identities=17% Similarity=0.169 Sum_probs=28.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
.++|..++|.||+|+|||+++..+|..+ |..++.+.
T Consensus 102 ~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 102 ENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp TTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3568899999999999999999998873 44444443
No 280
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.06 E-value=0.068 Score=53.81 Aligned_cols=27 Identities=30% Similarity=0.244 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+..|.|.|+||+|||+++..++..+
T Consensus 77 ~~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 77 GNAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CCSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 456788999999999999999998875
No 281
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.03 E-value=0.015 Score=53.70 Aligned_cols=29 Identities=17% Similarity=0.162 Sum_probs=24.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+.+...+.|.||+|+|||+|+++|+....
T Consensus 17 i~~Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 17 AAVGRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp --CCCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34556788999999999999999999864
No 282
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=94.97 E-value=0.013 Score=54.78 Aligned_cols=28 Identities=21% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+.+...+.|.||+|+|||+|++.++...
T Consensus 20 i~~G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 20 MNNIYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp --CCCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 3445678899999999999999999976
No 283
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=94.94 E-value=0.037 Score=54.81 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=24.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+++..++|.||.|+||||+++.+|..+
T Consensus 97 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 97 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4567889999999999999999999874
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.93 E-value=0.0059 Score=58.64 Aligned_cols=32 Identities=16% Similarity=-0.000 Sum_probs=26.1
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh-CCCc
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM-GINP 185 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l-g~~~ 185 (473)
.+.+..|.|.|++|+|||++++.+++.+ +..+
T Consensus 21 ~~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 21 GTRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp --CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred ccCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 3567889999999999999999999998 4433
No 285
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=94.91 E-value=0.01 Score=55.75 Aligned_cols=32 Identities=25% Similarity=0.096 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.++++|.||+|+|||++|..+++... .++..+
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdD 65 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADD 65 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecc
Confidence 57899999999999999999998865 554433
No 286
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=94.91 E-value=0.1 Score=59.25 Aligned_cols=24 Identities=25% Similarity=0.077 Sum_probs=20.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
....++|.||.|+|||++.+.++.
T Consensus 672 ~g~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 672 SERVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp SCCEEEEESCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCchHHHHHHHHH
Confidence 346799999999999999999874
No 287
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.78 E-value=0.02 Score=57.04 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+.+..+.|.||+|+|||||++.|+..+.
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 56778899999999999999999999863
No 288
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=94.74 E-value=0.041 Score=49.95 Aligned_cols=24 Identities=17% Similarity=0.031 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+++++|+|+|||+++-.++.+.
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999988777653
No 289
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.65 E-value=0.025 Score=50.62 Aligned_cols=27 Identities=15% Similarity=0.260 Sum_probs=23.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++-..+.|.||.|+|||+|+++++..+
T Consensus 31 ~~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 31 EKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 444578899999999999999999987
No 290
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=94.63 E-value=0.036 Score=52.87 Aligned_cols=26 Identities=23% Similarity=0.272 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|.||+|||+|..++...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 34567899999999999999999765
No 291
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=94.61 E-value=0.017 Score=53.13 Aligned_cols=32 Identities=19% Similarity=0.339 Sum_probs=28.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHhCCCcEEecccc
Q 011983 160 LGIWGGKGQGKSFQCELVFAKMGINPIMMSAGE 192 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~ 192 (473)
+|++|++|+|||++|+.++.. +.+.+++..+.
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~ 33 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQ 33 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCC
Confidence 789999999999999999988 88887877654
No 292
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.61 E-value=0.05 Score=55.34 Aligned_cols=28 Identities=21% Similarity=0.360 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++|..++|.||.|+||||+++.+|..+
T Consensus 154 ~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 154 FRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 4567899999999999999999999974
No 293
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=94.59 E-value=0.02 Score=60.89 Aligned_cols=70 Identities=10% Similarity=0.121 Sum_probs=42.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC--CcEEecccc-cccC-----------CCCChHHHHHHHHHHHHHHHHcCCce
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGI--NPIMMSAGE-LESG-----------NAGEPAKLIRQRYREAADIIKKGKMC 222 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~--~~i~vs~s~-l~s~-----------~~Ge~~~~ir~~f~~A~~~~~~~~p~ 222 (473)
..+++|.||+|+||||+.++++..+.- ..+.+.... +... .++.....+....+.+. +..|.
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~L----R~~PD 335 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAAL----RQRPD 335 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTG----GGCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhh----ccCCC
Confidence 456999999999999999999988532 334443321 1100 00111112233344343 77899
Q ss_pred EEEecCCC
Q 011983 223 CLFINDLD 230 (473)
Q Consensus 223 ILfIDEiD 230 (473)
++++.|+-
T Consensus 336 ~iivgEir 343 (511)
T 2oap_1 336 YIIVGEVR 343 (511)
T ss_dssp EEEESCCC
T ss_pred eEEeCCcC
Confidence 99999984
No 294
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.53 E-value=0.011 Score=55.33 Aligned_cols=27 Identities=22% Similarity=0.266 Sum_probs=17.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHH-HHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVF-AKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA-~~l 181 (473)
.+...+.|.||+|+|||++++.++ ...
T Consensus 25 ~~G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 25 SVGVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp ECCCEEEEECSCC----CHHHHHHC---
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 445678999999999999999999 765
No 295
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=94.53 E-value=0.037 Score=57.40 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=22.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..++|.||+|+||||+.++++..+.
T Consensus 168 gii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 168 GIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4688999999999999999999864
No 296
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=94.46 E-value=0.023 Score=53.59 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=27.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs 189 (473)
.-.|.|+|..|||||++++.+++ +|++++..+
T Consensus 9 ~~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 9 MYAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eeEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 45799999999999999999988 898887655
No 297
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.44 E-value=0.049 Score=51.79 Aligned_cols=26 Identities=15% Similarity=0.220 Sum_probs=20.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+-|.|.||+|+|||++++.+++.+
T Consensus 24 ~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 24 RGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCEEEEECCC---CHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 45678899999999999999999986
No 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=94.41 E-value=0.094 Score=60.48 Aligned_cols=25 Identities=24% Similarity=0.088 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.++.+.|+||+|+|||+||+.+++.
T Consensus 149 ~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 149 PAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp SSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCccHHHHHHHHHHh
Confidence 3678999999999999999999964
No 299
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=94.40 E-value=0.062 Score=57.05 Aligned_cols=29 Identities=17% Similarity=0.170 Sum_probs=24.6
Q ss_pred CCCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 153 NVKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 153 ~~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++.+-..++|.||||+|||+|++.++...
T Consensus 277 ~i~~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 277 GFFKDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SEESSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 44555689999999999999999999763
No 300
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=94.35 E-value=0.021 Score=62.31 Aligned_cols=33 Identities=18% Similarity=0.307 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH---hCCCcEEeccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK---MGINPIMMSAG 191 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs~s 191 (473)
..|++||||||||+++-.+..+ .+..++.+..+
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 5789999999999864444333 34555544443
No 301
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=94.35 E-value=0.21 Score=55.94 Aligned_cols=24 Identities=25% Similarity=0.018 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...++|.||.|+|||++.+.++.-
T Consensus 607 g~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 607 RRMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHHH
Confidence 357899999999999999999875
No 302
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=94.30 E-value=0.029 Score=55.82 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=24.8
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+++-..+.|+||+|+|||+|+++|+..+
T Consensus 123 i~~Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 123 IPKKNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CTTCSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred ecCCCEEEEECCCCCcHHHHHHHHhhhc
Confidence 4555789999999999999999999986
No 303
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=94.28 E-value=0.048 Score=51.59 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=25.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
-...++|||.|+|||+.+-.++.. .|..++.+.
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 356778999999999988777766 466666654
No 304
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=94.25 E-value=0.22 Score=56.66 Aligned_cols=22 Identities=23% Similarity=0.001 Sum_probs=19.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~ 179 (473)
..++|.||.|+|||++.+.++-
T Consensus 663 ~i~~ItGpNGsGKSTlLr~ial 684 (934)
T 3thx_A 663 MFHIITGPNMGGKSTYIRQTGV 684 (934)
T ss_dssp CEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 5789999999999999999854
No 305
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=94.22 E-value=0.035 Score=55.07 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+..+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 57789999999999999999999874
No 306
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=94.20 E-value=0.095 Score=51.65 Aligned_cols=36 Identities=14% Similarity=0.158 Sum_probs=28.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh----CCCcEEecc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM----GINPIMMSA 190 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l----g~~~i~vs~ 190 (473)
..+..++|.||+|+|||+++..+|..+ |..+..+..
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~ 142 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITT 142 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEEC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEec
Confidence 457899999999999999999998763 555555554
No 307
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.18 E-value=0.028 Score=51.83 Aligned_cols=23 Identities=17% Similarity=0.094 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+.|.||+|+|||++++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47889999999999999999986
No 308
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.18 E-value=0.033 Score=50.71 Aligned_cols=33 Identities=21% Similarity=0.082 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
++.+.|.|++|+|||++++.++..+ |..+..+.
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 4678999999999999999999874 44444333
No 309
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=94.13 E-value=0.027 Score=58.70 Aligned_cols=23 Identities=17% Similarity=0.338 Sum_probs=21.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++|.||||||||+++.+++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 79999999999999999999885
No 310
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=94.08 E-value=0.035 Score=52.35 Aligned_cols=28 Identities=14% Similarity=0.081 Sum_probs=23.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.....+.|.||+|+|||+|.++++....
T Consensus 14 ~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 14 AQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 3446788999999999999999999864
No 311
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.05 E-value=0.038 Score=50.35 Aligned_cols=26 Identities=15% Similarity=0.197 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
....+.|.||+|+|||++++.++..+
T Consensus 5 ~~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 5 MIPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 34578899999999999999999874
No 312
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.00 E-value=0.037 Score=51.93 Aligned_cols=27 Identities=22% Similarity=0.374 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..+.|.|.||+|+|||++++.+++.+.
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 346788999999999999999999864
No 313
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=93.99 E-value=0.052 Score=51.19 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=25.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
..+.|.|.|++|+|||++++.+++.++.+
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 35678899999999999999999999874
No 314
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=93.80 E-value=0.085 Score=55.98 Aligned_cols=28 Identities=21% Similarity=0.326 Sum_probs=25.0
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+..+..++|.||+|+||||+++.|+..+
T Consensus 290 i~~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 290 GKAPFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp SCTTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCcccHHHHHHHHHHHh
Confidence 4567899999999999999999999874
No 315
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=93.71 E-value=0.037 Score=59.70 Aligned_cols=33 Identities=24% Similarity=0.348 Sum_probs=25.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
...++|.||||||||+++.+++.. .+..++.+.
T Consensus 204 ~~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 204 HRLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp CSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 357899999999999999999876 355555443
No 316
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=93.69 E-value=0.045 Score=48.84 Aligned_cols=26 Identities=27% Similarity=0.314 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
...+|+||.|+|||+++++|+--++.
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 36789999999999999999988753
No 317
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.69 E-value=0.044 Score=52.41 Aligned_cols=27 Identities=26% Similarity=0.291 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.++.|.|.|++|+|||++++.+++.+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 457889999999999999999999863
No 318
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.64 E-value=0.084 Score=53.43 Aligned_cols=25 Identities=16% Similarity=0.328 Sum_probs=22.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..++|.||.|+||||++++++....
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4689999999999999999998754
No 319
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.61 E-value=0.19 Score=52.27 Aligned_cols=26 Identities=15% Similarity=0.057 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+|..+++.||+|+|||+++..+|..+
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l 122 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYY 122 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 67889999999999999999999874
No 320
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=93.53 E-value=0.073 Score=49.87 Aligned_cols=30 Identities=27% Similarity=0.386 Sum_probs=26.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
..|++.|+|+|.||+||+++|+.+.+.+|.
T Consensus 8 ~~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 8 GAPRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred cCCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 457789999999999999999999887764
No 321
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=93.43 E-value=0.01 Score=47.17 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=25.6
Q ss_pred HHHHHHHHhhcCC----CCCCHHHHHHHHhcCCCCchhhHHHHHHHhhHHHHHH
Q 011983 309 EDRIGVCSGIFRT----DNVPKEDIVKLVDTFPGQSIDFFGALRARVYDDEVRK 358 (473)
Q Consensus 309 eeR~~Il~~~l~~----~~v~~~~l~~l~~~~sga~l~f~gal~~~~~~~av~~ 358 (473)
++|.+||+.++++ .+++.+.+++.+++|+|+++. ++|..+...++++
T Consensus 1 ~~R~~Il~~~l~~~~~~~~vdl~~lA~~t~G~SGADi~---~l~~eAa~~ai~~ 51 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLAPEADLDSLIIRNDSLSGAVIA---AIMQEAGLRAVRK 51 (82)
T ss_dssp -------------CEECTTCCSTTTTTSSCCCCHHHHH---HHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHcCCCCCCcCCHHHHHHHcCCCCHHHHH---HHHHHHHHHHHHh
Confidence 4789999988865 467778888888999888888 7776666666554
No 322
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=93.39 E-value=0.14 Score=53.49 Aligned_cols=25 Identities=16% Similarity=0.057 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
...+..++.|+||||||++...+++
T Consensus 159 ~~~~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 159 SSAKVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp CCSEEEEEEECTTSCHHHHHHHHCC
T ss_pred ccccEEEEEcCCCCCHHHHHHHHhc
Confidence 4557889999999999999988775
No 323
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.32 E-value=0.06 Score=51.07 Aligned_cols=29 Identities=21% Similarity=0.258 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
..++.|.|.|++|+|||++++.+++.++.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45678889999999999999999998654
No 324
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.26 E-value=0.06 Score=49.18 Aligned_cols=27 Identities=19% Similarity=0.114 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+..|+|.|++|+|||+|+..++...
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345678899999999999999999864
No 325
>3l0o_A Transcription termination factor RHO; helicase, RHO factor, RNA capture mechanism, ATP-binding, hydrolase, nucleotide-binding, RN binding; 2.35A {Thermotoga maritima}
Probab=93.26 E-value=0.18 Score=51.99 Aligned_cols=75 Identities=12% Similarity=0.064 Sum_probs=43.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh-----CCCcEEeccc---------------ccccCCCCChH-HHHHH---HHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM-----GINPIMMSAG---------------ELESGNAGEPA-KLIRQ---RYREAAD 214 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l-----g~~~i~vs~s---------------~l~s~~~Ge~~-~~ir~---~f~~A~~ 214 (473)
-++|.||||+|||+|+..|++.. ++.++.+-.+ .+......++. ..++. ....|..
T Consensus 177 R~lIfg~~g~GKT~Ll~~Ia~~i~~~~~dv~~V~~lIGER~~EV~d~~~~~~G~VV~atadep~~~r~~~a~~altiAEy 256 (427)
T 3l0o_A 177 RGMIVAPPKAGKTTILKEIANGIAENHPDTIRIILLIDERPEEVTDIRESTNAIVIAAPFDMPPDKQVKVAELTLEMAKR 256 (427)
T ss_dssp EEEEEECTTCCHHHHHHHHHHHHHHHCTTSEEEEEECSCCHHHHSSSSSSCCSEEEECCTTSCHHHHHHHHHHHHHHHHH
T ss_pred eEEEecCCCCChhHHHHHHHHHHhhcCCCeEEEEEEeccCcchHHHHHHHhCCeEEEECCCCCHHHHHHHHHHHHHHHHH
Confidence 47788999999999999999863 3333332221 11112222322 22222 2223333
Q ss_pred HHHcCCceEEEecCCCCcc
Q 011983 215 IIKKGKMCCLFINDLDAGA 233 (473)
Q Consensus 215 ~~~~~~p~ILfIDEiDal~ 233 (473)
....++..+|++|++-..+
T Consensus 257 frd~G~dVLil~DslTR~A 275 (427)
T 3l0o_A 257 LVEFNYDVVILLDSLTRLA 275 (427)
T ss_dssp HHHTTCEEEEEEECHHHHH
T ss_pred HHHcCCCEEEecccchHHH
Confidence 3346788899999987664
No 326
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=93.18 E-value=0.047 Score=52.21 Aligned_cols=27 Identities=26% Similarity=0.236 Sum_probs=23.6
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++. ..+.|.||.|+|||||.++++.-.
T Consensus 22 i~~-e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 22 MGR-DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp ECS-SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred ECC-EEEEEECCCCCCHHHHHHHHhCCC
Confidence 455 788999999999999999999864
No 327
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=93.15 E-value=0.23 Score=49.57 Aligned_cols=27 Identities=33% Similarity=0.284 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.....+.|.|+||+|||++++.++..+
T Consensus 54 ~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 54 GNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 456778899999999999999998764
No 328
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.14 E-value=0.096 Score=56.27 Aligned_cols=28 Identities=21% Similarity=0.188 Sum_probs=24.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.....+.|.|++|+||||++++|+..++
T Consensus 367 ~~G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 367 RQGFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp GSCEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ccceEEEEECCCCChHHHHHHHHHHhhc
Confidence 3456789999999999999999999975
No 329
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=93.08 E-value=0.2 Score=55.90 Aligned_cols=23 Identities=22% Similarity=-0.013 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..++|.||.|+|||++.+.++.-
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 47889999999999999999864
No 330
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=92.97 E-value=0.083 Score=55.01 Aligned_cols=37 Identities=22% Similarity=0.389 Sum_probs=29.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh---CCCcEEeccc
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM---GINPIMMSAG 191 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs~s 191 (473)
..|..++|.|+||+|||+++..+|..+ |..+..+++.
T Consensus 97 ~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 97 KKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp SSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 356789999999999999999999874 4555555543
No 331
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=92.95 E-value=0.056 Score=48.86 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=20.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-++|.||+|+|||+|.+.++..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 45788999999999999999986
No 332
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=92.94 E-value=0.055 Score=58.79 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.++++||||||||+++..++..+
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~l 219 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYHL 219 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776653
No 333
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=92.91 E-value=0.061 Score=46.32 Aligned_cols=24 Identities=17% Similarity=0.129 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|++.|++|+|||+|++.+...
T Consensus 5 ~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 5 AIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456889999999999999999875
No 334
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=92.85 E-value=0.057 Score=48.73 Aligned_cols=25 Identities=20% Similarity=0.121 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..-++|.|++|+|||+|.+.++...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3568899999999999999999863
No 335
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.078 Score=47.24 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.....|++.|++|+|||+|...+...
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcC
Confidence 44567889999999999999999875
No 336
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=92.81 E-value=0.049 Score=51.38 Aligned_cols=26 Identities=23% Similarity=0.135 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++++.-.
T Consensus 29 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 29 KGEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TTCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34578899999999999999998764
No 337
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=92.80 E-value=0.074 Score=49.94 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+.|.|.|++|+|||++++.+++.+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999999986
No 338
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=92.80 E-value=0.064 Score=49.31 Aligned_cols=27 Identities=22% Similarity=0.134 Sum_probs=23.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
.++||.|++|+|||++|.++.+. |..+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r-G~~l 43 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR-GHQL 43 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT-TCEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc-CCeE
Confidence 69999999999999999999884 5443
No 339
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=92.73 E-value=0.053 Score=51.59 Aligned_cols=27 Identities=26% Similarity=0.313 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++|+...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 29 PEGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444578999999999999999998863
No 340
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=92.70 E-value=0.047 Score=51.02 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.|.||.|+|||||.++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 46889999999999999999975
No 341
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=92.66 E-value=0.068 Score=47.13 Aligned_cols=26 Identities=15% Similarity=0.032 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|++|+|||+|++.+...
T Consensus 9 ~~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 9 DYLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeEEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999875
No 342
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=92.66 E-value=0.068 Score=45.75 Aligned_cols=22 Identities=27% Similarity=0.211 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-+++.|++|+|||+|++.++..
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4788899999999999999875
No 343
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=92.61 E-value=0.071 Score=45.64 Aligned_cols=23 Identities=22% Similarity=0.199 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999875
No 344
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=92.58 E-value=0.057 Score=51.30 Aligned_cols=27 Identities=26% Similarity=0.240 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++++.-.
T Consensus 29 ~~Ge~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 29 KEGEFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578899999999999999999764
No 345
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=92.58 E-value=0.072 Score=45.63 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|++.+...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 346
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.48 E-value=0.096 Score=45.27 Aligned_cols=26 Identities=19% Similarity=0.102 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+.-|++.|++|+|||+|...+...
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 34567899999999999999999764
No 347
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=92.46 E-value=0.05 Score=49.34 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
..+.|.||+|+|||+|++.++..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 4688999999999999999999853
No 348
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=92.40 E-value=0.076 Score=46.33 Aligned_cols=26 Identities=27% Similarity=0.210 Sum_probs=21.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+..|++.|++|+|||+|++.+...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999875
No 349
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=92.36 E-value=0.078 Score=45.22 Aligned_cols=23 Identities=26% Similarity=0.247 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-+++.|++|+|||+|++.+...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35889999999999999999876
No 350
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=92.31 E-value=0.064 Score=51.88 Aligned_cols=28 Identities=21% Similarity=0.201 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
+.-..+.|.||.|+|||||.++|+.-..
T Consensus 30 ~~Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 30 RAGDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3445788999999999999999998643
No 351
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=92.29 E-value=0.099 Score=47.88 Aligned_cols=28 Identities=25% Similarity=0.439 Sum_probs=23.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
.+..++|.|++|+|||+++..++..+..
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~~ 56 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIGN 56 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHTT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhcc
Confidence 3457888899999999999999988643
No 352
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=92.27 E-value=0.076 Score=50.89 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+-..+.|.||.|+|||||.++|+.-
T Consensus 28 ~Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 28 KGEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3457889999999999999999974
No 353
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=92.23 E-value=0.46 Score=54.69 Aligned_cols=23 Identities=17% Similarity=-0.036 Sum_probs=20.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
...++|.||.|+|||++.+.++-
T Consensus 789 g~i~~ItGpNgsGKSTlLr~iGl 811 (1022)
T 2o8b_B 789 AYCVLVTGPNMGGKSTLMRQAGL 811 (1022)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHH
T ss_pred CcEEEEECCCCCChHHHHHHHHH
Confidence 36899999999999999999843
No 354
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=92.23 E-value=0.082 Score=45.90 Aligned_cols=24 Identities=25% Similarity=0.282 Sum_probs=20.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|+|.|+||+|||+|.+.+...
T Consensus 4 ~~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 4 LYRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEEECCCCccHHHHHHHHhcC
Confidence 456889999999999999999754
No 355
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=92.22 E-value=0.075 Score=53.54 Aligned_cols=27 Identities=26% Similarity=0.361 Sum_probs=23.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
-..+.|.||+|+|||||++.|+.....
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~ 196 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNT 196 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTC
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 457889999999999999999998654
No 356
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=92.21 E-value=0.088 Score=45.95 Aligned_cols=26 Identities=19% Similarity=0.294 Sum_probs=22.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+..|++.|++|+|||+|.+.+...
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34567888899999999999999764
No 357
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=92.20 E-value=0.066 Score=51.53 Aligned_cols=26 Identities=23% Similarity=0.202 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|+|||||.++++.-.
T Consensus 32 ~Ge~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 32 KGDVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999998764
No 358
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=92.20 E-value=0.071 Score=45.87 Aligned_cols=23 Identities=22% Similarity=0.180 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 45889999999999999999876
No 359
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=92.20 E-value=0.079 Score=51.36 Aligned_cols=26 Identities=23% Similarity=0.276 Sum_probs=22.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+-..+.|.||.|+|||||.++|+.-
T Consensus 44 ~~Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 44 HPGEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34457889999999999999999985
No 360
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=92.16 E-value=0.068 Score=50.94 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++-..+.|.||.|+|||||.++|+.-.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 26 QPNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp CTTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 444678899999999999999999864
No 361
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=92.15 E-value=0.08 Score=51.46 Aligned_cols=23 Identities=26% Similarity=0.335 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999875
No 362
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=92.14 E-value=0.2 Score=52.04 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=19.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..|+|.|.||+|||+|...+...
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEEE
T ss_pred CEEEEECCCCCcHHHHHHHHhCC
Confidence 35788899999999999998654
No 363
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=92.10 E-value=0.56 Score=55.40 Aligned_cols=27 Identities=22% Similarity=0.283 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++-..+.|.||.|+|||++++++....
T Consensus 442 ~~G~~vaivG~sGsGKSTll~ll~~~~ 468 (1321)
T 4f4c_A 442 NAGQTVALVGSSGCGKSTIISLLLRYY 468 (1321)
T ss_dssp CTTCEEEEEECSSSCHHHHHHHHTTSS
T ss_pred cCCcEEEEEecCCCcHHHHHHHhcccc
Confidence 344578899999999999999999874
No 364
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.07 E-value=0.077 Score=53.99 Aligned_cols=25 Identities=28% Similarity=0.157 Sum_probs=21.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
--.+.|.||.|||||||.++||.-.
T Consensus 30 Ge~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 30 GEILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCchHHHHHHHHhcCC
Confidence 3568899999999999999999863
No 365
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.06 E-value=0.11 Score=46.05 Aligned_cols=25 Identities=16% Similarity=0.024 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|++.|++|+|||+|+.++...
T Consensus 6 ~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 6 SSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHhC
Confidence 4567899999999999999999886
No 366
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=92.06 E-value=0.071 Score=50.78 Aligned_cols=26 Identities=19% Similarity=0.286 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|+|||||.++|+.-.
T Consensus 31 ~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 31 RGQIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33568899999999999999999764
No 367
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=92.01 E-value=0.085 Score=57.16 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 578999999999999888776653
No 368
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=92.01 E-value=0.073 Score=51.64 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..-..+.|.||.|+|||||.++|+.-.
T Consensus 48 ~~Gei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 48 REGEVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEEcCCCCcHHHHHHHHHcCC
Confidence 344578899999999999999999764
No 369
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=91.99 E-value=0.17 Score=47.72 Aligned_cols=35 Identities=14% Similarity=0.129 Sum_probs=27.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh--CCCcEEec
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM--GINPIMMS 189 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l--g~~~i~vs 189 (473)
..+..+++.|.+|+|||+++..+|..+ |.....++
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788899999999999999999775 55555444
No 370
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=91.97 E-value=0.064 Score=50.33 Aligned_cols=26 Identities=23% Similarity=0.194 Sum_probs=23.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+..+.|.||.|+||||+++.++..
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~ 43 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY 43 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc
Confidence 45678899999999999999999987
No 371
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=91.97 E-value=0.075 Score=51.33 Aligned_cols=27 Identities=22% Similarity=0.281 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++|+...
T Consensus 44 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 44 PSGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 444678999999999999999998764
No 372
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=91.95 E-value=0.092 Score=45.24 Aligned_cols=23 Identities=22% Similarity=0.244 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|...+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46889999999999999999865
No 373
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=91.95 E-value=0.089 Score=46.02 Aligned_cols=23 Identities=17% Similarity=0.219 Sum_probs=20.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-++|.|+||+|||+|.+.++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 45788899999999999999863
No 374
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=91.94 E-value=0.069 Score=50.18 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
-..+.|.||.|+|||||.++++...
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3468899999999999999998864
No 375
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=91.92 E-value=0.094 Score=45.18 Aligned_cols=25 Identities=24% Similarity=0.194 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..-|++.|++|+|||+|.+.+....
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcCC
Confidence 3568899999999999999998763
No 376
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=91.90 E-value=0.076 Score=51.61 Aligned_cols=27 Identities=22% Similarity=0.211 Sum_probs=23.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++|+...
T Consensus 43 ~~Ge~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 43 YPGKVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999999874
No 377
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=91.89 E-value=0.074 Score=51.96 Aligned_cols=26 Identities=27% Similarity=0.291 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++|+.-.
T Consensus 33 ~Ge~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 33 RGEVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 34568899999999999999998864
No 378
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=91.88 E-value=0.095 Score=45.67 Aligned_cols=24 Identities=21% Similarity=0.189 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|.+.+...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999865
No 379
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=91.87 E-value=0.076 Score=50.86 Aligned_cols=27 Identities=33% Similarity=0.409 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++-..+.|.||.|+|||||.++|+.-.
T Consensus 33 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 33 KQGEVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp ETTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998864
No 380
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=91.87 E-value=0.071 Score=51.20 Aligned_cols=28 Identities=14% Similarity=0.240 Sum_probs=24.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHhCCCc
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKMGINP 185 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~lg~~~ 185 (473)
..|.|+|++|+|||++++.+...+|++.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 4688999999999999999999888664
No 381
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=91.83 E-value=0.078 Score=50.13 Aligned_cols=26 Identities=19% Similarity=0.392 Sum_probs=22.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++++...
T Consensus 33 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 33 RGQLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 34578899999999999999999874
No 382
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=91.82 E-value=0.075 Score=47.37 Aligned_cols=21 Identities=29% Similarity=0.363 Sum_probs=19.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~ 179 (473)
-++|.|++|+|||+|.+.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 478889999999999999986
No 383
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=91.82 E-value=0.098 Score=45.16 Aligned_cols=25 Identities=12% Similarity=0.027 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|++.|++|+|||+|.+.+...
T Consensus 5 ~~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 5 YSFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3456889999999999999999876
No 384
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.81 E-value=0.1 Score=45.84 Aligned_cols=25 Identities=28% Similarity=0.290 Sum_probs=21.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
|...+|+||.|+|||++..+|+-.+
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4467899999999999999998765
No 385
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=91.80 E-value=0.12 Score=47.48 Aligned_cols=27 Identities=19% Similarity=0.334 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHhC
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKMG 182 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~lg 182 (473)
.+..++|.|++|+|||+|+..++....
T Consensus 37 ~~~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 37 GVVAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp TCEEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 345677779999999999999998853
No 386
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=91.80 E-value=0.093 Score=46.41 Aligned_cols=24 Identities=17% Similarity=0.216 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-++|.|++|+|||+|.+.++..
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356888999999999999999874
No 387
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=91.78 E-value=0.1 Score=44.80 Aligned_cols=23 Identities=26% Similarity=0.219 Sum_probs=20.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|.+.+...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45888999999999999999875
No 388
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=91.75 E-value=0.079 Score=51.41 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=22.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++|+.-.
T Consensus 36 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 36 SGEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TTCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34578899999999999999999864
No 389
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=91.72 E-value=0.1 Score=44.81 Aligned_cols=24 Identities=21% Similarity=0.123 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|.+.+...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 456889999999999999999874
No 390
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=91.72 E-value=0.12 Score=51.71 Aligned_cols=28 Identities=25% Similarity=0.274 Sum_probs=23.9
Q ss_pred CCCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 154 VKVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 154 ~~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
......+.|.||||+|||+|.++++..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456788999999999999999999764
No 391
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=91.71 E-value=0.092 Score=53.31 Aligned_cols=25 Identities=24% Similarity=0.372 Sum_probs=21.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
-..+.|.||.|||||||.++||.-.
T Consensus 41 Ge~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 41 GEMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3568899999999999999999863
No 392
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=91.64 E-value=0.083 Score=50.78 Aligned_cols=26 Identities=27% Similarity=0.220 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++++...
T Consensus 25 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 25 AGEILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999998764
No 393
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=91.63 E-value=0.11 Score=44.54 Aligned_cols=22 Identities=14% Similarity=-0.058 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-|++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3788999999999999999876
No 394
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=91.61 E-value=0.094 Score=53.76 Aligned_cols=26 Identities=19% Similarity=0.105 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.--.+.|.||.|||||||.++|+.-.
T Consensus 28 ~Ge~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 28 EGEFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHcCC
Confidence 33568899999999999999999864
No 395
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=91.58 E-value=0.087 Score=50.85 Aligned_cols=27 Identities=22% Similarity=0.406 Sum_probs=22.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++|+.-.
T Consensus 39 ~~Gei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 39 EEGEIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 344578899999999999999998764
No 396
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=91.57 E-value=0.099 Score=53.13 Aligned_cols=26 Identities=15% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 28 DGEFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEEcCCCchHHHHHHHHHCCC
Confidence 34568899999999999999999863
No 397
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=91.56 E-value=0.088 Score=50.96 Aligned_cols=27 Identities=26% Similarity=0.244 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++|+.-.
T Consensus 31 ~~Ge~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 31 NEGECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CTTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 344578899999999999999998764
No 398
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.55 E-value=0.15 Score=47.36 Aligned_cols=31 Identities=23% Similarity=0.394 Sum_probs=24.7
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh--CCCcEEe
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM--GINPIMM 188 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l--g~~~i~v 188 (473)
+-|.|-|+.|+||||+++.+++.+ |.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347788999999999999999987 4444443
No 399
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=91.54 E-value=0.085 Score=51.57 Aligned_cols=26 Identities=19% Similarity=0.110 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+-..+.|.||.|+|||||.++|+...
T Consensus 46 ~Ge~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 46 KGDKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 34568899999999999999999864
No 400
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=91.53 E-value=0.1 Score=53.17 Aligned_cols=26 Identities=19% Similarity=0.165 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 28 DGEFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHhcCC
Confidence 34568899999999999999999864
No 401
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=91.52 E-value=0.1 Score=45.55 Aligned_cols=25 Identities=16% Similarity=0.155 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|++.|++|+|||+|++.+...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4467889999999999999999754
No 402
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.13 Score=46.15 Aligned_cols=26 Identities=31% Similarity=0.408 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|+|.|++|+|||+|++.+...
T Consensus 26 ~~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 26 SAEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999876
No 403
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.51 E-value=0.093 Score=45.22 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|.+.+...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45889999999999999999864
No 404
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=91.50 E-value=0.099 Score=53.36 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|||||||.++||.-.
T Consensus 28 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 28 DGEFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCcHHHHHHHHHHcCC
Confidence 33568899999999999999999864
No 405
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=91.50 E-value=0.1 Score=58.49 Aligned_cols=23 Identities=22% Similarity=0.338 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHh
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+++.||||||||+++..++..+
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~l 395 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYHL 395 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHHH
Confidence 57899999999999877776653
No 406
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=91.43 E-value=0.11 Score=44.92 Aligned_cols=21 Identities=24% Similarity=0.151 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~ 179 (473)
-|+|.|+||+|||+|++.+..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478889999999999999863
No 407
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=91.39 E-value=0.11 Score=45.09 Aligned_cols=23 Identities=17% Similarity=0.156 Sum_probs=20.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|++.+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 56888899999999999999865
No 408
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=91.38 E-value=0.12 Score=45.33 Aligned_cols=25 Identities=20% Similarity=0.072 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+..-|+|.|++|+|||+|++.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3467899999999999999999875
No 409
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=91.35 E-value=0.1 Score=44.95 Aligned_cols=21 Identities=24% Similarity=0.259 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~ 179 (473)
-++|.|+||+|||+|.+.+.+
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 478889999999999999864
No 410
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=91.34 E-value=0.11 Score=53.14 Aligned_cols=27 Identities=22% Similarity=0.212 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
+.-..+.|.||.|||||||.++||.-.
T Consensus 35 ~~Ge~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 35 KDGEFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCC
Confidence 334568899999999999999999863
No 411
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=91.34 E-value=0.11 Score=46.11 Aligned_cols=25 Identities=16% Similarity=0.082 Sum_probs=21.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-+++.|++|+|||+|...+...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3466888899999999999999754
No 412
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.33 E-value=0.12 Score=45.39 Aligned_cols=25 Identities=24% Similarity=0.138 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
+.+.-|++.|++|+|||+|...+..
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999998874
No 413
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=91.32 E-value=0.11 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|++.|++|+|||+|++.+...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 4466889999999999999999875
No 414
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=91.30 E-value=0.12 Score=44.90 Aligned_cols=25 Identities=28% Similarity=0.166 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|++.|++|+|||+|++.+...
T Consensus 14 ~~~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 14 YIFKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467899999999999999999876
No 415
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=91.21 E-value=0.27 Score=50.60 Aligned_cols=33 Identities=12% Similarity=0.097 Sum_probs=27.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEeccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAG 191 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s 191 (473)
.++|++|.|+|||..+-.++...+...+.+...
T Consensus 110 ~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~ 142 (472)
T 2fwr_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPT 142 (472)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESS
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECC
Confidence 489999999999999988888887766666554
No 416
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.21 E-value=0.089 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.270 Sum_probs=22.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|||||||.++||.-.
T Consensus 25 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 25 SGEYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp TTCEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCccHHHHHHHHHcCC
Confidence 33578899999999999999999864
No 417
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=91.18 E-value=0.084 Score=50.79 Aligned_cols=27 Identities=30% Similarity=0.363 Sum_probs=22.8
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||||.++++...
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 29 NKGDILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp ETTCEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 334578899999999999999999864
No 418
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=91.18 E-value=0.13 Score=44.85 Aligned_cols=24 Identities=29% Similarity=0.263 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|.+.+...
T Consensus 9 ~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 9 THKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457888999999999999999876
No 419
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=91.17 E-value=0.11 Score=45.68 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|+|.|++|+|||+|...+...
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 420
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=91.10 E-value=0.066 Score=48.49 Aligned_cols=26 Identities=15% Similarity=0.162 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.....+.|.|++|+|||+|.++++..
T Consensus 24 ~~~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 24 DTGIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SCSEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 44567889999999999999988753
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=91.09 E-value=0.13 Score=45.40 Aligned_cols=24 Identities=21% Similarity=0.164 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-++|.|+||+|||+|.+.++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 356888999999999999999875
No 422
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=91.09 E-value=0.16 Score=44.45 Aligned_cols=25 Identities=12% Similarity=-0.094 Sum_probs=21.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|++.|++|+|||+|.+.+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3456888999999999999999864
No 423
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=91.04 E-value=0.13 Score=45.34 Aligned_cols=25 Identities=24% Similarity=0.282 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|++.+...
T Consensus 9 ~~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 9 FLFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECCCCCCHHHHHHHHHcC
Confidence 3467889999999999999999875
No 424
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=91.02 E-value=0.13 Score=44.93 Aligned_cols=25 Identities=24% Similarity=0.215 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|++.|++|+|||+|.+.+...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3457899999999999999999875
No 425
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=91.01 E-value=0.13 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.230 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|+..++..
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 356888999999999999999876
No 426
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=91.00 E-value=0.13 Score=45.81 Aligned_cols=26 Identities=15% Similarity=0.139 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|++|+|||+|.+.+...
T Consensus 23 ~~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 23 NFVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp SEEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHhcC
Confidence 34467899999999999999999875
No 427
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=90.97 E-value=0.11 Score=50.49 Aligned_cols=25 Identities=20% Similarity=0.181 Sum_probs=22.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
-..+.|.||.|+|||||.++++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 4568899999999999999999865
No 428
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=90.97 E-value=0.14 Score=45.98 Aligned_cols=25 Identities=16% Similarity=0.021 Sum_probs=20.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
++.-+++.|+||+|||+|.+.+...
T Consensus 22 ~~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 22 KHGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp --CEEEEEESTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 3456888999999999999999874
No 429
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.92 E-value=0.12 Score=45.15 Aligned_cols=26 Identities=19% Similarity=0.171 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+.-|+|.|++|+|||+|...+...
T Consensus 8 ~~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 8 DVAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHhC
Confidence 34567899999999999999999875
No 430
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=90.83 E-value=0.16 Score=45.75 Aligned_cols=26 Identities=15% Similarity=0.058 Sum_probs=21.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+.-|+|.|++|+|||+|++.+...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 45678899999999999999999865
No 431
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=90.81 E-value=0.13 Score=44.86 Aligned_cols=25 Identities=28% Similarity=0.118 Sum_probs=21.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|++.|++|+|||+|++.+...
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~~~ 32 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFADN 32 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHCSC
T ss_pred cceEEEEECCCCCCHHHHHHHHhcC
Confidence 4456889999999999999998754
No 432
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=90.77 E-value=0.15 Score=44.76 Aligned_cols=25 Identities=32% Similarity=0.288 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+..-|+|.|++|+|||+|++.+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3457889999999999999999875
No 433
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=90.73 E-value=0.15 Score=45.32 Aligned_cols=26 Identities=23% Similarity=0.138 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|++|+|||+|++.+...
T Consensus 14 ~~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 14 DYLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp SEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567899999999999999999875
No 434
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=90.67 E-value=0.23 Score=45.76 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHh---CCCcEEec
Q 011983 160 LGIWGGKGQGKSFQCELVFAKM---GINPIMMS 189 (473)
Q Consensus 160 lLL~GPPGtGKT~lAkaIA~~l---g~~~i~vs 189 (473)
|.|-|+-|+||||+++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6688999999999999999885 66666554
No 435
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=90.62 E-value=0.16 Score=44.83 Aligned_cols=26 Identities=19% Similarity=0.106 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.+.-|++.|++|+|||+|.+.+...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45677899999999999999999864
No 436
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=90.61 E-value=0.15 Score=44.63 Aligned_cols=23 Identities=13% Similarity=0.027 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|++.|++|+|||+|.+.+...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46889999999999999999865
No 437
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=90.59 E-value=0.39 Score=46.50 Aligned_cols=23 Identities=17% Similarity=0.296 Sum_probs=20.3
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..|.|.|+||+|||+|..++...
T Consensus 4 ~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 4 TEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHCC
Confidence 45788899999999999999864
No 438
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=90.57 E-value=0.089 Score=53.29 Aligned_cols=26 Identities=23% Similarity=0.250 Sum_probs=22.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.-..+.|.||.|||||||.++||.-.
T Consensus 30 ~Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 30 NGERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Confidence 33568899999999999999999863
No 439
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=90.53 E-value=0.15 Score=48.86 Aligned_cols=23 Identities=13% Similarity=0.135 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46888999999999999999765
No 440
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=90.51 E-value=0.42 Score=48.01 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
....+.|.|+||+|||+|.++++..+
T Consensus 73 ~~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 73 LAFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 35678899999999999999999863
No 441
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=90.49 E-value=0.15 Score=45.70 Aligned_cols=26 Identities=35% Similarity=0.333 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+...-|+|.|++|+|||+|...+...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34567899999999999999999876
No 442
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=90.49 E-value=0.14 Score=57.50 Aligned_cols=33 Identities=15% Similarity=0.176 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH----hCCCcEEeccc
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK----MGINPIMMSAG 191 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~----lg~~~i~vs~s 191 (473)
.+|+.||||||||+++..+... .+..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 5789999999999987666544 24454444443
No 443
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=90.47 E-value=0.16 Score=44.93 Aligned_cols=26 Identities=15% Similarity=0.355 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
...-|+|.|++|+|||+|++.+....
T Consensus 13 ~~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 13 INFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cccEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568899999999999998887653
No 444
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=90.46 E-value=0.16 Score=45.19 Aligned_cols=25 Identities=16% Similarity=0.065 Sum_probs=21.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|+|.|++|+|||+|.+.+...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 3467899999999999999999865
No 445
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=90.46 E-value=0.16 Score=45.20 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|+..+...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 457899999999999999999876
No 446
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=90.44 E-value=0.14 Score=52.55 Aligned_cols=26 Identities=23% Similarity=0.268 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-..+.|.||.|||||+|.++|+.-
T Consensus 45 ~~Ge~~~llGpsGsGKSTLLr~iaGl 70 (390)
T 3gd7_A 45 SPGQRVGLLGRTGSGKSTLLSAFLRL 70 (390)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHTC
T ss_pred cCCCEEEEECCCCChHHHHHHHHhCC
Confidence 34457889999999999999999974
No 447
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.43 E-value=0.16 Score=45.27 Aligned_cols=26 Identities=19% Similarity=-0.014 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
...-|+|.|++|+|||+|++.+....
T Consensus 22 ~~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 22 YMFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp ECEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeeEEEEECCCCcCHHHHHHHHhcCC
Confidence 34578999999999999999999874
No 448
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=90.40 E-value=0.14 Score=45.08 Aligned_cols=22 Identities=23% Similarity=0.081 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-|++.|++|+|||+|...+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4788899999999999999875
No 449
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.39 E-value=0.21 Score=44.46 Aligned_cols=26 Identities=19% Similarity=0.161 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|+|.|++|+|||+|...+...
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHcC
Confidence 34567899999999999999999874
No 450
>2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis}
Probab=90.39 E-value=0.37 Score=49.71 Aligned_cols=22 Identities=23% Similarity=0.289 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.|.|.|.||+|||+|...++..
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4778899999999999998764
No 451
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=90.38 E-value=0.14 Score=45.40 Aligned_cols=25 Identities=12% Similarity=0.017 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
+.+.-|++.|++|+|||+|...+..
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~~ 44 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLHL 44 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CCceEEEEECCCCCCHHHHHHHHHc
Confidence 4567799999999999999998853
No 452
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=90.35 E-value=0.14 Score=45.56 Aligned_cols=26 Identities=19% Similarity=0.180 Sum_probs=22.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+...-|+|.|++|+|||+|.+.+...
T Consensus 20 ~~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 20 KEEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHcC
Confidence 34567899999999999999999875
No 453
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=90.32 E-value=0.55 Score=45.22 Aligned_cols=24 Identities=21% Similarity=0.368 Sum_probs=20.9
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...|+|.|.||+|||+|..++...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 356888999999999999999875
No 454
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=90.28 E-value=0.17 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.180 Sum_probs=21.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|+|.|++|+|||+|++.+...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 457889999999999999999876
No 455
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=90.28 E-value=1.5 Score=43.78 Aligned_cols=25 Identities=32% Similarity=0.566 Sum_probs=21.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..| -|.+.|++|+|||++.+++...
T Consensus 33 ~lp-~I~vvG~~~sGKSSLln~l~g~ 57 (360)
T 3t34_A 33 SLP-AIAVVGGQSSGKSSVLESIVGK 57 (360)
T ss_dssp CCC-EEEEECBTTSSHHHHHHHHHTS
T ss_pred cCC-EEEEECCCCCcHHHHHHHHhCC
Confidence 455 5777799999999999999874
No 456
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=90.26 E-value=0.13 Score=50.55 Aligned_cols=27 Identities=19% Similarity=0.393 Sum_probs=23.0
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
.+-..+.|.||.|+|||+|.++|+...
T Consensus 62 ~~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 62 ERGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 344578899999999999999999864
No 457
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.19 E-value=0.19 Score=44.51 Aligned_cols=26 Identities=15% Similarity=-0.061 Sum_probs=22.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+...-|++.|++|+|||+|.+.+...
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHTT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhcC
Confidence 44567899999999999999999854
No 458
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=90.15 E-value=0.17 Score=45.19 Aligned_cols=24 Identities=33% Similarity=0.425 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|++.+...
T Consensus 21 ~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 21 EVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCcHHHHHHHHHhC
Confidence 357899999999999999998875
No 459
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=90.14 E-value=0.22 Score=50.28 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
--.+.|.||+|+|||+|.+.|++.....
T Consensus 71 Gq~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 71 GQRIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 3468899999999999999999997544
No 460
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=90.13 E-value=0.2 Score=45.21 Aligned_cols=26 Identities=19% Similarity=0.176 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|+|.|++|+|||+|+..+...
T Consensus 18 ~~~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 18 DSIMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567899999999999999999865
No 461
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=90.12 E-value=0.18 Score=45.05 Aligned_cols=24 Identities=21% Similarity=0.073 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|...+...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 457889999999999999999875
No 462
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=90.11 E-value=0.15 Score=45.63 Aligned_cols=26 Identities=23% Similarity=0.178 Sum_probs=22.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|+|.|++|+|||+|.+.+...
T Consensus 21 ~~~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 21 IRELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp CEEEEEEEEECTTSSHHHHHHHHHHC
T ss_pred CCceEEEEECcCCCCHHHHHHHHhcC
Confidence 34567899999999999999999875
No 463
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=90.11 E-value=0.17 Score=44.34 Aligned_cols=24 Identities=21% Similarity=0.124 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|+|.|++|+|||+|+..+...
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHHcC
Confidence 456888999999999999999854
No 464
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=90.10 E-value=0.15 Score=53.52 Aligned_cols=24 Identities=21% Similarity=0.169 Sum_probs=21.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
-..++|.||.|+|||+|++.|+..
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl 161 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSY 161 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCc
Confidence 345788899999999999999986
No 465
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=90.05 E-value=0.42 Score=45.73 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.|+|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 4778899999999999999765
No 466
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=90.03 E-value=0.18 Score=44.54 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=20.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.-|+|.|++|+|||+|...+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 45778899999999999999876
No 467
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=89.99 E-value=0.19 Score=46.47 Aligned_cols=27 Identities=26% Similarity=0.197 Sum_probs=23.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHHhCC
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAKMGI 183 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~lg~ 183 (473)
|...+|+||.|+|||++..+|.-.++-
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 457789999999999999999887654
No 468
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=89.95 E-value=0.14 Score=44.83 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|++.+...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 456889999999999999999875
No 469
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=89.92 E-value=0.2 Score=45.46 Aligned_cols=25 Identities=12% Similarity=0.021 Sum_probs=20.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|...+...
T Consensus 6 ~~~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 6 SQRAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp --CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3456888899999999999999876
No 470
>2qe7_A ATP synthase subunit alpha; blockage of ATP hydrolysis, F1-ATPase, single analysis, thermoalkaliphilic, hydrolase; 3.06A {Bacillus SP} PDB: 1sky_B
Probab=89.91 E-value=0.47 Score=50.21 Aligned_cols=65 Identities=11% Similarity=0.095 Sum_probs=41.3
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~l-AkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
-++|.|++|+|||.| ...|+++.+..++.|-.. +|+..+.+++++++..+ ......++++.--.|
T Consensus 164 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~------iGeR~~Ev~~~~~~~~~-~g~m~~tvvV~atad 229 (502)
T 2qe7_A 164 RELIIGDRQTGKTTIAIDTIINQKGQDVICIYVA------IGQKQSTVAGVVETLRQ-HDALDYTIVVTASAS 229 (502)
T ss_dssp BCEEEECSSSCHHHHHHHHHHGGGSCSEEEEEEE------ESCCHHHHHHHHHHHHH-TTCSTTEEEEEECTT
T ss_pred EEEEECCCCCCchHHHHHHHHHhhcCCcEEEEEE------CCCcchHHHHHHHHHhh-CCCcceeEEEEECCC
Confidence 367789999999999 679999987665433322 35656666665554431 113455677665444
No 471
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=89.91 E-value=0.19 Score=44.88 Aligned_cols=25 Identities=28% Similarity=0.143 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|++.+...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 20 YLFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3457899999999999999999865
No 472
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=89.90 E-value=0.18 Score=44.99 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|++.+...
T Consensus 20 ~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 20 ELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999888775
No 473
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=89.89 E-value=0.2 Score=45.43 Aligned_cols=26 Identities=12% Similarity=-0.005 Sum_probs=21.4
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|++.|++|+|||+|+..+...
T Consensus 28 ~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 28 GQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 44567899999999999999999865
No 474
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=89.87 E-value=0.2 Score=44.50 Aligned_cols=26 Identities=12% Similarity=0.114 Sum_probs=22.1
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-++|.|++|+|||+|.+.+...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 34567889999999999999998865
No 475
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=89.85 E-value=0.18 Score=45.39 Aligned_cols=25 Identities=16% Similarity=-0.004 Sum_probs=21.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|++.+...
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred CcEEEEEECCCCcCHHHHHHHHHhC
Confidence 4567889999999999999999875
No 476
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=89.83 E-value=0.19 Score=44.85 Aligned_cols=26 Identities=19% Similarity=0.098 Sum_probs=22.6
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|++|+|||+|.+.+...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34567899999999999999999876
No 477
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=89.78 E-value=0.23 Score=51.69 Aligned_cols=30 Identities=20% Similarity=0.299 Sum_probs=24.9
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHhCCC
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKMGIN 184 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~lg~~ 184 (473)
..--.+.|.||+|||||+|.+.|++.....
T Consensus 155 ~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 155 GRGQRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp BTTCEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 334568899999999999999999997543
No 478
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=89.72 E-value=0.43 Score=50.65 Aligned_cols=65 Identities=11% Similarity=0.111 Sum_probs=40.9
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~l-AkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
-++|.|++|+|||.| ...|++..+..++.|-.. +|+..+.++++++...+ ......++++.--.|
T Consensus 177 R~~I~g~~g~GKT~Lal~~I~~~~~~dv~~V~~~------IGeR~~Ev~e~~~~~~~-~g~m~rtvvV~atad 242 (515)
T 2r9v_A 177 RELIIGDRQTGKTAIAIDTIINQKGQGVYCIYVA------IGQKKSAIARIIDKLRQ-YGAMEYTTVVVASAS 242 (515)
T ss_dssp BEEEEEETTSSHHHHHHHHHHTTTTTTEEEEEEE------ESCCHHHHHHHHHHHHH-TTGGGGEEEEEECTT
T ss_pred EEEEEcCCCCCccHHHHHHHHHhhcCCcEEEEEE------cCCCcHHHHHHHHHHHh-CCCcceeEEEEECCC
Confidence 377889999999999 579999987665433322 35656666655554420 013345677665444
No 479
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=89.65 E-value=0.24 Score=46.95 Aligned_cols=34 Identities=18% Similarity=-0.005 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHH-HHHHHHHH--hCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSF-QCELVFAK--MGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~-lAkaIA~~--lg~~~i~vs 189 (473)
.....+++||-|+|||+ |.+.+-+. .+...+.+.
T Consensus 27 ~G~I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 27 SGWIECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp CCEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 34678899999999999 55665443 355554443
No 480
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=89.62 E-value=0.19 Score=45.14 Aligned_cols=24 Identities=17% Similarity=-0.009 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|+..+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 456899999999999999999865
No 481
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=89.61 E-value=0.33 Score=54.07 Aligned_cols=23 Identities=26% Similarity=0.252 Sum_probs=19.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHH
Q 011983 158 LILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+++.||+|+|||+++..++..
T Consensus 110 ~~vii~gpTGSGKTtllp~ll~~ 132 (773)
T 2xau_A 110 QIMVFVGETGSGKTTQIPQFVLF 132 (773)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999977776554
No 482
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=89.58 E-value=0.19 Score=45.47 Aligned_cols=23 Identities=17% Similarity=0.073 Sum_probs=20.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFA 179 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~ 179 (473)
+.-++|.|++|+|||+|.+.+..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 45688999999999999999875
No 483
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=89.55 E-value=0.2 Score=45.20 Aligned_cols=24 Identities=25% Similarity=0.155 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|+|.|++|+|||+|...+...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 457889999999999999999875
No 484
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=89.51 E-value=0.18 Score=45.25 Aligned_cols=26 Identities=15% Similarity=0.004 Sum_probs=21.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+...-|++.|++|+|||+|++.+...
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~~ 52 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKLG 52 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCSS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHhC
Confidence 44567899999999999999998643
No 485
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=89.49 E-value=0.2 Score=45.82 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=22.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|++.+...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4467889999999999999999875
No 486
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=89.38 E-value=0.14 Score=50.94 Aligned_cols=27 Identities=30% Similarity=0.306 Sum_probs=23.3
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
++-..+.|.||.|+|||+|+++|+...
T Consensus 78 ~~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 78 MPGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CTTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 445678999999999999999999864
No 487
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=89.34 E-value=0.2 Score=46.86 Aligned_cols=25 Identities=24% Similarity=0.360 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
.+.-|+|.|++|+|||+|.+++...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4467889999999999999999875
No 488
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=89.31 E-value=2 Score=40.98 Aligned_cols=34 Identities=18% Similarity=0.043 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
.-...++|||.|+|||+.+-..+.. .|..++.+.
T Consensus 18 ~g~l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~k 54 (234)
T 2orv_A 18 RGQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIK 54 (234)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEe
Confidence 3467889999999999765555444 355555544
No 489
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=89.26 E-value=0.21 Score=50.95 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=22.7
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..-..+.|.||.|+|||||.++|+.-.
T Consensus 52 ~~Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 52 PAGQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred cCCCEEEEEcCCCchHHHHHHHHhcCC
Confidence 334578899999999999999999863
No 490
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=89.15 E-value=0.22 Score=45.46 Aligned_cols=25 Identities=16% Similarity=0.183 Sum_probs=21.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|++.+...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3457889999999999999999875
No 491
>1fx0_A ATP synthase alpha chain; latent ATPase, thermal stability, potential tentoxin binding hydrolase; 3.20A {Spinacia oleracea} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1kmh_A*
Probab=89.14 E-value=0.44 Score=50.54 Aligned_cols=65 Identities=17% Similarity=0.169 Sum_probs=39.3
Q ss_pred EEEEEcCCCCcHHHH-HHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHHHHHHHHcCCceEEEecCCC
Q 011983 159 ILGIWGGKGQGKSFQ-CELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYREAADIIKKGKMCCLFINDLD 230 (473)
Q Consensus 159 glLL~GPPGtGKT~l-AkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~A~~~~~~~~p~ILfIDEiD 230 (473)
-++|.|++|+|||.| ...|++..+..++.|-.. +|+..+.+++++++-.+ ......++++.--.|
T Consensus 165 R~~Ifg~~g~GKT~Lal~~I~~~~~~dv~~V~~~------iGeR~~Ev~~~~~~~~~-~g~m~rtvvV~atad 230 (507)
T 1fx0_A 165 RELIIGDRQTGKTAVATDTILNQQGQNVICVYVA------IGQKASSVAQVVTNFQE-RGAMEYTIVVAETAD 230 (507)
T ss_dssp BCBEEESSSSSHHHHHHHHHHTCCTTTCEEEEEE------ESCCHHHHHHHHHHTGG-GTGGGSEEEEEECTT
T ss_pred EEEEecCCCCCccHHHHHHHHHhhcCCcEEEEEE------cCCCchHHHHHHHHHHh-cCccccceEEEECCC
Confidence 367789999999999 679999877654433321 35555555555543320 002335566665544
No 492
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=89.04 E-value=0.25 Score=44.19 Aligned_cols=26 Identities=12% Similarity=-0.049 Sum_probs=20.5
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
....-|+|.|++|+|||+|.+.+...
T Consensus 18 ~~~~ki~~~G~~~~GKssl~~~l~~~ 43 (201)
T 2q3h_A 18 GRGVKCVLVGDGAVGKTSLVVSYTTN 43 (201)
T ss_dssp --CEEEEEECSTTSSHHHHHHHHHC-
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34567889999999999999998754
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=88.98 E-value=0.2 Score=44.31 Aligned_cols=25 Identities=16% Similarity=-0.072 Sum_probs=21.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|++.|++|+|||+|.+.+...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 3467899999999999999999865
No 494
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=88.96 E-value=0.21 Score=44.34 Aligned_cols=26 Identities=23% Similarity=0.174 Sum_probs=21.2
Q ss_pred CCCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 155 KVPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 155 ~~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..+.-|+|.|++|+|||+|...+...
T Consensus 15 ~~~~ki~v~G~~~~GKSsl~~~l~~~ 40 (199)
T 4bas_A 15 KTKLQVVMCGLDNSGKTTIINQVKPA 40 (199)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHSCC
T ss_pred CCCcEEEEECCCCCCHHHHHHHHhcC
Confidence 34467889999999999999998754
No 495
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=88.96 E-value=0.23 Score=44.19 Aligned_cols=24 Identities=17% Similarity=0.001 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
..-|++.|++|+|||+|++.+...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 357889999999999999999876
No 496
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=88.88 E-value=0.13 Score=45.13 Aligned_cols=25 Identities=20% Similarity=0.111 Sum_probs=10.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 156 VPLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 156 ~p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
...-|+|.|++|+|||+|+..+...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 7 YLFKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEEEECCCCC------------
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3467899999999999999998755
No 497
>3mfy_A V-type ATP synthase alpha chain; A-type ATP synthase, P loop, phenylalanine mutant, hydrolase; 2.35A {Pyrococcus horikoshii} PDB: 3i4l_A* 3i72_A 3i73_A* 3p20_A 3ikj_A 3qg1_A 3nd8_A 3nd9_A 1vdz_A 3qia_A 3qjy_A 3m4y_A 3se0_A 3sdz_A
Probab=88.78 E-value=0.29 Score=52.56 Aligned_cols=46 Identities=17% Similarity=0.196 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHHhCCCcEEecccccccCCCCChHHHHHHHHHH
Q 011983 159 ILGIWGGKGQGKSFQCELVFAKMGINPIMMSAGELESGNAGEPAKLIRQRYRE 211 (473)
Q Consensus 159 glLL~GPPGtGKT~lAkaIA~~lg~~~i~vs~s~l~s~~~Ge~~~~ir~~f~~ 211 (473)
-++|.|++|+|||.|+..||+.....++.+- .+|+..+.+.+++++
T Consensus 229 r~~I~g~~g~GKT~L~~~ia~~~~~~~~V~~-------~iGER~~Ev~e~~~~ 274 (588)
T 3mfy_A 229 TAAIPGPAGSGKTVTQHQLAKWSDAQVVIYI-------GCGERGNEMTDVLEE 274 (588)
T ss_dssp EEEECSCCSHHHHHHHHHHHHHSSCSEEEEE-------ECCSSSSHHHHHHHH
T ss_pred eEEeecCCCCCHHHHHHHHHhccCCCEEEEE-------EecccHHHHHHHHHH
Confidence 4788899999999999999998665432211 134544555555554
No 498
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=88.71 E-value=0.23 Score=50.40 Aligned_cols=24 Identities=25% Similarity=0.146 Sum_probs=21.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHHHh
Q 011983 158 LILGIWGGKGQGKSFQCELVFAKM 181 (473)
Q Consensus 158 ~glLL~GPPGtGKT~lAkaIA~~l 181 (473)
..+.|.||+|+|||+|+++|+...
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~ 239 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQ 239 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCS
T ss_pred CEEEEECCCCccHHHHHHHHhccc
Confidence 478899999999999999998654
No 499
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=88.64 E-value=0.25 Score=44.82 Aligned_cols=24 Identities=17% Similarity=0.054 Sum_probs=21.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK 180 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~ 180 (473)
+.-|++.|++|+|||+|+..+...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CcEEEEECcCCCCHHHHHHHHhcC
Confidence 356889999999999999999874
No 500
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=88.61 E-value=0.39 Score=48.56 Aligned_cols=33 Identities=24% Similarity=0.420 Sum_probs=25.4
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHHH---hCCCcEEec
Q 011983 157 PLILGIWGGKGQGKSFQCELVFAK---MGINPIMMS 189 (473)
Q Consensus 157 p~glLL~GPPGtGKT~lAkaIA~~---lg~~~i~vs 189 (473)
..++++.||+|+|||++++.++.. .|..++.++
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 446888899999999999999877 344555544
Done!