Query 011986
Match_columns 473
No_of_seqs 249 out of 1672
Neff 8.4
Searched_HMMs 46136
Date Fri Mar 29 07:24:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011986.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011986hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN00411 nodulin MtN21 family 100.0 6.4E-31 1.4E-35 264.2 32.5 281 132-427 11-332 (358)
2 PRK11689 aromatic amino acid e 100.0 7.8E-31 1.7E-35 259.0 31.4 270 133-425 3-289 (295)
3 PRK11453 O-acetylserine/cystei 100.0 5.5E-30 1.2E-34 253.5 34.8 278 136-426 6-290 (299)
4 PRK11272 putative DMT superfam 100.0 3.7E-30 8E-35 253.9 32.4 273 135-426 9-288 (292)
5 PRK15430 putative chlorampheni 100.0 6.6E-30 1.4E-34 252.5 31.6 275 129-425 3-287 (296)
6 PRK10532 threonine and homoser 100.0 3.7E-29 7.9E-34 246.9 33.4 271 131-427 9-285 (293)
7 TIGR00950 2A78 Carboxylate/Ami 100.0 5.6E-28 1.2E-32 234.2 28.5 254 146-418 1-259 (260)
8 KOG4510 Permease of the drug/m 100.0 9.4E-31 2E-35 240.1 5.6 276 131-428 35-330 (346)
9 COG2962 RarD Predicted permeas 100.0 3.7E-27 7.9E-32 221.4 28.6 271 132-427 5-287 (293)
10 PTZ00343 triose or hexose phos 100.0 1.5E-25 3.3E-30 225.9 34.5 283 134-424 49-349 (350)
11 TIGR00817 tpt Tpt phosphate/ph 100.0 2.8E-26 6E-31 227.5 27.8 273 148-427 16-297 (302)
12 TIGR00688 rarD rarD protein. T 99.9 2.1E-25 4.7E-30 215.8 28.4 241 134-398 2-255 (256)
13 TIGR03340 phn_DUF6 phosphonate 99.9 1E-24 2.2E-29 214.0 26.9 267 136-420 3-280 (281)
14 COG0697 RhaT Permeases of the 99.9 4E-22 8.6E-27 195.5 34.0 271 132-424 5-288 (292)
15 PF06027 DUF914: Eukaryotic pr 99.9 8.4E-23 1.8E-27 201.5 28.8 280 132-428 11-310 (334)
16 COG5006 rhtA Threonine/homoser 99.9 6.8E-21 1.5E-25 174.5 27.4 268 135-427 13-286 (292)
17 TIGR00776 RhaT RhaT L-rhamnose 99.9 1.2E-19 2.5E-24 178.6 29.6 264 135-424 2-289 (290)
18 KOG2765 Predicted membrane pro 99.9 2.8E-20 6E-25 179.4 19.4 286 132-429 12-396 (416)
19 PF08449 UAA: UAA transporter 99.7 3.3E-15 7.1E-20 148.2 29.4 254 161-428 31-302 (303)
20 KOG1441 Glucose-6-phosphate/ph 99.7 2.2E-16 4.8E-21 154.1 14.2 268 150-429 33-313 (316)
21 COG2510 Predicted membrane pro 99.6 4.3E-14 9.4E-19 116.8 12.1 129 134-262 3-139 (140)
22 COG2510 Predicted membrane pro 99.4 7.5E-13 1.6E-17 109.5 10.9 136 270-423 4-139 (140)
23 KOG1444 Nucleotide-sugar trans 99.4 4.8E-11 1E-15 114.5 23.0 284 135-429 13-306 (314)
24 KOG2234 Predicted UDP-galactos 99.4 5.4E-10 1.2E-14 108.9 29.5 276 134-424 15-323 (345)
25 KOG3912 Predicted integral mem 99.4 9.4E-11 2E-15 109.5 22.9 282 138-423 7-334 (372)
26 KOG1443 Predicted integral mem 99.4 6.9E-11 1.5E-15 111.9 22.1 258 159-421 41-313 (349)
27 PF04142 Nuc_sug_transp: Nucle 99.4 7.6E-11 1.7E-15 112.7 21.6 208 192-414 18-244 (244)
28 KOG2766 Predicted membrane pro 99.4 2.4E-13 5.1E-18 125.1 3.2 269 134-424 18-300 (336)
29 PF00892 EamA: EamA-like trans 99.3 1.5E-11 3.4E-16 104.7 11.1 125 279-422 1-125 (126)
30 PF00892 EamA: EamA-like trans 99.3 2E-11 4.4E-16 103.9 10.4 117 144-261 1-125 (126)
31 KOG1580 UDP-galactose transpor 99.3 5.2E-11 1.1E-15 108.5 12.0 254 162-429 53-319 (337)
32 KOG1581 UDP-galactose transpor 99.2 3.5E-09 7.6E-14 100.6 21.0 253 161-427 50-317 (327)
33 PF13536 EmrE: Multidrug resis 99.1 7.4E-10 1.6E-14 93.3 11.6 98 167-265 2-109 (113)
34 TIGR00950 2A78 Carboxylate/Ami 99.0 6.5E-09 1.4E-13 100.5 16.5 127 132-258 126-260 (260)
35 PF03151 TPT: Triose-phosphate 99.0 5.1E-09 1.1E-13 92.8 13.9 147 270-422 1-152 (153)
36 COG5070 VRG4 Nucleotide-sugar 99.0 1.4E-08 3E-13 92.2 16.4 266 150-428 22-301 (309)
37 PF06800 Sugar_transport: Suga 99.0 8.6E-08 1.9E-12 91.7 22.0 235 161-420 11-268 (269)
38 TIGR03340 phn_DUF6 phosphonate 99.0 1.7E-08 3.7E-13 99.0 16.8 134 271-424 3-136 (281)
39 KOG1442 GDP-fucose transporter 99.0 2E-10 4.3E-15 107.1 2.8 264 152-427 46-331 (347)
40 KOG4314 Predicted carbohydrate 98.9 1.9E-08 4.2E-13 89.6 13.7 214 197-425 59-278 (290)
41 PRK13499 rhamnose-proton sympo 98.9 2.1E-06 4.6E-11 85.4 27.5 281 132-424 5-342 (345)
42 PRK15430 putative chlorampheni 98.9 2.9E-08 6.3E-13 98.2 14.4 141 266-423 5-145 (296)
43 PRK02971 4-amino-4-deoxy-L-ara 98.9 1.1E-07 2.3E-12 81.7 14.9 120 269-424 2-123 (129)
44 PF05653 Mg_trans_NIPA: Magnes 98.9 3.3E-08 7.2E-13 97.4 13.3 260 132-425 5-294 (300)
45 TIGR00688 rarD rarD protein. T 98.8 9.2E-08 2E-12 92.5 15.4 140 269-423 2-142 (256)
46 PRK10532 threonine and homoser 98.8 1.3E-07 2.9E-12 93.3 15.7 128 133-261 147-280 (293)
47 PLN00411 nodulin MtN21 family 98.8 2.3E-07 4.9E-12 93.9 16.2 140 269-425 13-158 (358)
48 PRK11689 aromatic amino acid e 98.7 1.9E-07 4E-12 92.4 14.7 127 133-262 155-287 (295)
49 PRK11272 putative DMT superfam 98.7 4.8E-07 1E-11 89.3 15.4 129 133-262 149-285 (292)
50 PF13536 EmrE: Multidrug resis 98.6 3.8E-07 8.3E-12 76.7 10.2 77 349-426 33-109 (113)
51 TIGR00803 nst UDP-galactose tr 98.6 1E-06 2.2E-11 83.3 14.1 60 361-420 162-221 (222)
52 KOG1582 UDP-galactose transpor 98.5 7E-06 1.5E-10 77.0 17.5 259 158-429 69-338 (367)
53 PRK11453 O-acetylserine/cystei 98.5 3.4E-06 7.3E-11 83.6 15.8 126 271-423 6-132 (299)
54 TIGR00817 tpt Tpt phosphate/ph 98.5 1.2E-06 2.7E-11 86.7 12.5 130 133-262 144-293 (302)
55 PRK15051 4-amino-4-deoxy-L-ara 98.4 3.5E-06 7.7E-11 70.5 11.9 64 199-262 45-109 (111)
56 PRK15051 4-amino-4-deoxy-L-ara 98.4 2.7E-06 5.9E-11 71.2 10.2 70 354-423 40-109 (111)
57 TIGR00776 RhaT RhaT L-rhamnose 98.4 2.9E-06 6.4E-11 83.6 12.0 126 133-261 151-287 (290)
58 PF03151 TPT: Triose-phosphate 98.3 2.2E-05 4.8E-10 69.4 15.2 125 135-259 1-150 (153)
59 COG0697 RhaT Permeases of the 98.3 1.7E-05 3.7E-10 77.4 15.6 130 133-263 153-288 (292)
60 PRK02971 4-amino-4-deoxy-L-ara 98.3 1.5E-05 3.3E-10 68.4 13.1 120 134-264 2-124 (129)
61 PTZ00343 triose or hexose phos 98.3 1.8E-05 3.9E-10 80.2 15.9 128 133-260 193-346 (350)
62 KOG2922 Uncharacterized conser 98.3 2.8E-06 6.1E-11 81.9 9.1 265 130-427 17-310 (335)
63 COG4975 GlcU Putative glucose 98.3 1.7E-07 3.8E-12 86.5 0.1 264 134-424 2-286 (288)
64 COG2962 RarD Predicted permeas 98.2 1.9E-05 4.2E-10 75.4 12.7 144 267-427 5-148 (293)
65 COG5006 rhtA Threonine/homoser 98.1 0.00011 2.3E-09 68.7 14.0 127 132-258 146-278 (292)
66 KOG1583 UDP-N-acetylglucosamin 98.0 1.5E-05 3.3E-10 75.1 7.8 245 163-423 34-314 (330)
67 PRK10452 multidrug efflux syst 98.0 7.9E-05 1.7E-09 62.9 10.1 70 356-425 35-105 (120)
68 PF06027 DUF914: Eukaryotic pr 97.8 0.00065 1.4E-08 67.8 15.6 76 350-426 79-154 (334)
69 PRK09541 emrE multidrug efflux 97.8 0.00028 6E-09 58.8 10.0 70 356-425 35-105 (110)
70 PF06800 Sugar_transport: Suga 97.7 0.00091 2E-08 64.3 13.6 125 132-258 136-267 (269)
71 PF08449 UAA: UAA transporter 97.6 0.0017 3.6E-08 64.5 15.6 131 280-429 11-142 (303)
72 PRK10650 multidrug efflux syst 97.6 0.0018 4E-08 53.6 12.6 68 193-260 37-106 (109)
73 KOG4510 Permease of the drug/m 97.6 1.1E-05 2.4E-10 75.7 -1.1 137 266-425 35-171 (346)
74 COG2076 EmrE Membrane transpor 97.5 0.00077 1.7E-08 55.1 9.5 68 357-424 36-104 (106)
75 PRK10650 multidrug efflux syst 97.5 0.0034 7.3E-08 52.1 13.3 65 358-422 42-107 (109)
76 PRK11431 multidrug efflux syst 97.5 0.00099 2.2E-08 54.9 9.4 66 358-423 36-102 (105)
77 COG2076 EmrE Membrane transpor 97.4 0.0028 6.2E-08 51.8 11.5 72 191-262 30-103 (106)
78 PF04657 DUF606: Protein of un 97.4 0.0072 1.6E-07 52.6 14.8 124 136-259 3-138 (138)
79 PF06379 RhaT: L-rhamnose-prot 97.4 0.11 2.3E-06 51.5 24.3 282 133-423 6-340 (344)
80 PF04657 DUF606: Protein of un 97.4 0.0072 1.6E-07 52.6 14.7 132 270-420 2-138 (138)
81 PRK11431 multidrug efflux syst 97.4 0.0022 4.8E-08 52.8 10.8 71 192-262 30-102 (105)
82 PRK10452 multidrug efflux syst 97.4 0.0032 6.9E-08 53.2 12.0 70 194-263 33-104 (120)
83 PF05653 Mg_trans_NIPA: Magnes 97.4 0.0012 2.6E-08 65.3 10.6 122 266-426 4-125 (300)
84 PRK09541 emrE multidrug efflux 97.4 0.0043 9.3E-08 51.7 11.9 68 195-262 34-103 (110)
85 PF10639 UPF0546: Uncharacteri 97.3 0.0011 2.5E-08 55.0 7.4 109 140-260 2-112 (113)
86 PF00893 Multi_Drug_Res: Small 97.1 0.002 4.4E-08 52.0 6.9 58 357-414 35-93 (93)
87 PF07857 DUF1632: CEO family ( 97.0 0.0035 7.5E-08 60.0 9.0 133 270-429 1-140 (254)
88 PF04142 Nuc_sug_transp: Nucle 96.8 0.0075 1.6E-07 57.8 9.2 77 351-428 18-94 (244)
89 PRK13499 rhamnose-proton sympo 96.7 0.015 3.3E-07 58.2 11.3 145 267-429 5-159 (345)
90 COG3238 Uncharacterized protei 96.7 0.08 1.7E-06 46.3 14.1 137 269-423 5-146 (150)
91 PF00893 Multi_Drug_Res: Small 96.6 0.028 6.1E-07 45.3 9.9 56 197-252 35-92 (93)
92 PF07857 DUF1632: CEO family ( 96.5 0.048 1E-06 52.3 12.7 159 135-295 1-209 (254)
93 KOG1581 UDP-galactose transpor 96.3 0.031 6.7E-07 54.0 10.2 128 132-259 170-310 (327)
94 COG4975 GlcU Putative glucose 96.0 0.0028 6.1E-08 59.2 1.3 132 270-426 3-139 (288)
95 KOG1441 Glucose-6-phosphate/ph 95.5 0.035 7.6E-07 54.9 6.9 129 132-260 161-305 (316)
96 PF10639 UPF0546: Uncharacteri 95.5 0.026 5.5E-07 47.0 5.0 61 361-421 51-112 (113)
97 COG3238 Uncharacterized protei 95.4 0.66 1.4E-05 40.6 13.7 128 134-261 5-145 (150)
98 TIGR00803 nst UDP-galactose tr 95.1 0.19 4.1E-06 47.3 10.3 66 194-259 155-221 (222)
99 KOG2234 Predicted UDP-galactos 94.9 1.2 2.7E-05 44.2 15.6 66 362-427 103-168 (345)
100 KOG1580 UDP-galactose transpor 94.3 0.31 6.7E-06 45.5 9.0 126 134-259 172-310 (337)
101 KOG2765 Predicted membrane pro 94.1 0.59 1.3E-05 46.7 11.2 135 131-265 244-393 (416)
102 KOG2922 Uncharacterized conser 94.0 0.023 5E-07 55.3 1.3 125 266-429 18-142 (335)
103 PF07168 Ureide_permease: Urei 92.0 0.03 6.5E-07 54.1 -1.2 120 140-259 2-143 (336)
104 KOG4831 Unnamed protein [Funct 91.1 0.55 1.2E-05 38.1 5.3 110 138-261 7-124 (125)
105 PF06379 RhaT: L-rhamnose-prot 90.5 1.4 3E-05 43.8 8.6 146 268-429 6-159 (344)
106 KOG1444 Nucleotide-sugar trans 89.9 2 4.3E-05 42.2 9.0 127 133-259 156-297 (314)
107 KOG4314 Predicted carbohydrate 89.1 0.28 6.1E-06 44.5 2.4 63 363-425 65-127 (290)
108 PRK02237 hypothetical protein; 86.8 5.7 0.00012 32.6 8.3 45 380-424 62-106 (109)
109 KOG1582 UDP-galactose transpor 86.8 4.2 9E-05 39.1 8.7 113 160-272 218-343 (367)
110 PF02694 UPF0060: Uncharacteri 85.9 7.6 0.00017 31.8 8.6 45 380-424 60-104 (107)
111 KOG3912 Predicted integral mem 84.5 1.8 3.8E-05 41.7 5.1 62 363-424 98-159 (372)
112 COG5070 VRG4 Nucleotide-sugar 84.0 4.6 0.0001 37.7 7.4 122 134-255 155-289 (309)
113 PF03348 Serinc: Serine incorp 83.9 59 0.0013 33.9 19.8 61 354-427 247-307 (429)
114 PRK02237 hypothetical protein; 83.0 14 0.0003 30.4 9.0 47 216-262 57-105 (109)
115 KOG1443 Predicted integral mem 81.9 21 0.00046 35.1 11.3 128 133-260 163-313 (349)
116 PF02694 UPF0060: Uncharacteri 79.7 18 0.00039 29.6 8.5 53 211-263 50-104 (107)
117 TIGR00905 2A0302 transporter, 75.8 90 0.0019 32.8 15.3 40 386-426 397-437 (473)
118 TIGR02865 spore_II_E stage II 75.5 46 0.001 37.5 13.4 44 217-260 10-54 (764)
119 PF04342 DUF486: Protein of un 74.2 16 0.00035 29.9 6.8 50 372-421 56-106 (108)
120 COG3086 RseC Positive regulato 72.9 5.5 0.00012 34.4 4.1 46 211-256 68-113 (150)
121 PF06570 DUF1129: Protein of u 72.7 40 0.00086 31.3 10.3 81 138-218 89-173 (206)
122 PF07168 Ureide_permease: Urei 72.1 1 2.2E-05 43.8 -0.5 144 275-426 2-149 (336)
123 PRK09776 putative diguanylate 70.9 1.2E+02 0.0026 35.4 16.2 16 223-238 24-39 (1092)
124 KOG1442 GDP-fucose transporter 70.2 3.4 7.3E-05 39.8 2.5 53 133-185 184-238 (347)
125 PF06570 DUF1129: Protein of u 67.9 86 0.0019 29.0 11.4 15 352-366 182-196 (206)
126 COG1742 Uncharacterized conser 67.5 48 0.001 27.1 8.0 26 238-263 80-105 (109)
127 TIGR03644 marine_trans_1 proba 66.6 1.4E+02 0.003 31.0 13.5 65 354-418 297-363 (404)
128 COG1742 Uncharacterized conser 66.0 23 0.0005 28.9 6.0 44 381-424 62-105 (109)
129 COG2245 Predicted membrane pro 64.5 1E+02 0.0022 27.6 10.2 29 275-303 29-57 (182)
130 COG3086 RseC Positive regulato 62.4 12 0.00026 32.4 4.1 30 371-400 68-97 (150)
131 PF04246 RseC_MucC: Positive r 62.0 8.7 0.00019 33.0 3.3 42 214-255 64-105 (135)
132 PLN00028 nitrate transmembrane 58.6 2.2E+02 0.0047 29.8 13.9 16 408-423 417-432 (476)
133 COG4657 RnfA Predicted NADH:ub 58.5 1.3E+02 0.0029 26.7 9.8 81 239-319 94-185 (193)
134 PF05297 Herpes_LMP1: Herpesvi 57.7 3.4 7.3E-05 39.7 0.0 60 213-272 45-110 (381)
135 PF08507 COPI_assoc: COPI asso 57.0 14 0.0003 31.9 3.7 31 392-423 75-105 (136)
136 PF03547 Mem_trans: Membrane t 56.9 1.7E+02 0.0037 29.6 12.5 14 353-366 65-78 (385)
137 KOG2766 Predicted membrane pro 55.8 16 0.00035 34.9 4.1 131 131-262 163-299 (336)
138 PRK10862 SoxR reducing system 55.6 13 0.00029 32.8 3.4 28 212-239 69-96 (154)
139 PF09586 YfhO: Bacterial membr 54.4 3.7E+02 0.0081 30.5 18.9 77 162-243 92-168 (843)
140 COG3169 Uncharacterized protei 53.7 34 0.00073 27.6 4.9 31 392-422 84-114 (116)
141 PF05977 MFS_3: Transmembrane 52.8 3.2E+02 0.007 29.3 22.9 42 382-423 351-392 (524)
142 COG2271 UhpC Sugar phosphate p 52.7 2.1E+02 0.0046 29.8 11.8 49 380-429 162-211 (448)
143 KOG4831 Unnamed protein [Funct 50.9 11 0.00023 30.8 1.8 57 366-422 67-124 (125)
144 PRK08238 hypothetical protein; 48.7 2.8E+02 0.006 29.5 12.5 18 242-259 198-215 (479)
145 PF04246 RseC_MucC: Positive r 48.6 28 0.00061 29.8 4.3 27 372-398 62-88 (135)
146 COG2917 Intracellular septatio 47.3 1.8E+02 0.004 26.1 9.0 78 205-282 10-91 (180)
147 KOG3817 Uncharacterized conser 45.7 1.1E+02 0.0023 30.8 8.1 34 191-224 251-284 (452)
148 PF09605 Trep_Strep: Hypotheti 43.9 2.5E+02 0.0055 25.5 11.7 70 192-263 3-76 (186)
149 PF09852 DUF2079: Predicted me 43.7 2.7E+02 0.0058 29.1 11.6 119 161-285 58-187 (449)
150 PRK06638 NADH:ubiquinone oxido 41.9 2.8E+02 0.0061 25.5 11.6 33 392-424 133-165 (198)
151 PRK01061 Na(+)-translocating N 41.8 3.2E+02 0.0069 26.1 12.6 72 252-323 133-208 (244)
152 KOG1583 UDP-N-acetylglucosamin 37.2 1.8E+02 0.0039 28.4 8.0 129 133-261 163-313 (330)
153 PRK14397 membrane protein; Pro 35.1 95 0.0021 29.2 5.8 24 441-464 194-217 (222)
154 PF06123 CreD: Inner membrane 34.8 5.5E+02 0.012 26.8 14.9 51 370-421 371-421 (430)
155 KOG2325 Predicted transporter/ 34.0 4.1E+02 0.0088 28.3 10.8 19 404-422 208-226 (488)
156 PF01350 Flavi_NS4A: Flaviviru 31.0 3.6E+02 0.0078 23.5 9.3 51 371-425 68-118 (144)
157 PF04550 Phage_holin_2: Phage 30.9 2.7E+02 0.0058 22.1 6.7 54 239-294 27-86 (89)
158 PF04342 DUF486: Protein of un 30.0 3.2E+02 0.0068 22.5 10.2 50 212-261 56-107 (108)
159 PF09656 PGPGW: Putative trans 29.8 1.5E+02 0.0033 21.1 4.7 45 245-293 4-48 (53)
160 KOG2322 N-methyl-D-aspartate r 29.1 5.1E+02 0.011 24.6 9.6 23 269-291 195-217 (237)
161 TIGR00751 menA 1,4-dihydroxy-2 28.9 5.6E+02 0.012 25.0 16.2 55 353-409 111-168 (284)
162 PRK12468 flhB flagellar biosyn 28.7 6E+02 0.013 26.1 10.8 30 274-303 104-133 (386)
163 PRK10862 SoxR reducing system 28.6 1E+02 0.0022 27.3 4.6 28 371-398 68-95 (154)
164 TIGR01299 synapt_SV2 synaptic 27.9 9.1E+02 0.02 27.2 14.3 177 185-370 160-353 (742)
165 PF12811 BaxI_1: Bax inhibitor 27.4 5.9E+02 0.013 24.8 21.3 50 268-321 209-262 (274)
166 PRK11715 inner membrane protei 27.3 7.4E+02 0.016 25.9 12.6 69 193-261 333-403 (436)
167 TIGR03810 arg_ornith_anti argi 26.4 7.6E+02 0.016 25.7 18.3 21 406-426 412-432 (468)
168 PF12805 FUSC-like: FUSC-like 26.0 5.9E+02 0.013 24.6 10.1 56 237-293 42-97 (284)
169 PRK12586 putative monovalent c 26.0 4.3E+02 0.0094 23.1 7.9 15 403-417 69-83 (145)
170 PRK10245 adrA diguanylate cycl 25.9 7E+02 0.015 25.2 12.7 44 239-282 33-76 (366)
171 TIGR01943 rnfA electron transp 25.8 5.2E+02 0.011 23.7 11.4 44 252-295 113-157 (190)
172 PRK10263 DNA translocase FtsK; 25.7 4.6E+02 0.0099 31.5 10.2 13 224-236 83-95 (1355)
173 COG0004 AmtB Ammonia permease 25.2 6.6E+02 0.014 26.0 10.2 121 195-317 201-330 (409)
174 PRK12574 putative monovalent c 24.9 4.4E+02 0.0094 22.9 7.8 61 245-305 12-73 (141)
175 PRK02463 OxaA-like protein pre 24.8 3.1E+02 0.0067 27.2 7.7 41 381-422 208-248 (307)
176 PRK12573 putative monovalent c 24.1 4.1E+02 0.0088 23.1 7.4 45 245-289 12-56 (140)
177 COG1030 NfeD Membrane-bound se 23.8 8.5E+02 0.018 25.4 11.1 66 198-264 261-326 (436)
178 COG3476 Tryptophan-rich sensor 23.6 5.3E+02 0.011 23.0 8.8 60 363-423 63-124 (161)
179 PRK14789 lipoprotein signal pe 23.4 5.8E+02 0.013 23.4 8.8 12 393-404 107-118 (191)
180 PF09925 DUF2157: Predicted me 23.3 4.8E+02 0.01 22.4 13.4 85 157-242 56-141 (145)
181 PRK07419 1,4-dihydroxy-2-napht 23.3 7.3E+02 0.016 24.5 14.3 56 353-410 121-179 (304)
182 TIGR00892 2A0113 monocarboxyla 22.9 6.5E+02 0.014 26.0 10.3 15 405-419 401-415 (455)
183 PF06123 CreD: Inner membrane 22.7 8.9E+02 0.019 25.3 12.8 23 237-259 373-395 (430)
184 CHL00045 ccsA cytochrome c bio 22.4 7.8E+02 0.017 24.5 18.9 56 165-220 13-71 (319)
185 PRK11715 inner membrane protei 22.3 9.1E+02 0.02 25.3 14.6 39 382-421 389-427 (436)
186 TIGR00997 ispZ intracellular s 22.2 5.9E+02 0.013 23.0 14.7 60 208-267 13-73 (178)
187 smart00786 SHR3_chaperone ER m 21.8 41 0.00088 30.9 0.8 15 412-426 141-155 (196)
188 PRK11010 ampG muropeptide tran 21.7 9.4E+02 0.02 25.2 13.3 54 371-424 345-402 (491)
189 TIGR00805 oat sodium-independe 21.4 2.4E+02 0.0052 31.0 6.9 27 231-257 84-110 (633)
190 PF15099 PIRT: Phosphoinositid 21.4 48 0.001 28.0 1.1 16 352-367 58-73 (129)
191 TIGR01940 nqrE NADH:ubiquinone 21.1 6.7E+02 0.014 23.2 12.4 44 252-295 123-167 (200)
192 PF11044 TMEMspv1-c74-12: Plec 21.0 47 0.001 22.5 0.8 16 403-418 2-17 (49)
193 COG0004 AmtB Ammonia permease 20.7 9.5E+02 0.021 24.9 13.6 41 160-200 93-133 (409)
194 COG1575 MenA 1,4-dihydroxy-2-n 20.6 8.4E+02 0.018 24.2 14.0 55 353-409 123-180 (303)
195 PF08229 SHR3_chaperone: ER me 20.1 65 0.0014 29.7 1.8 18 411-428 140-157 (196)
No 1
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=100.00 E-value=6.4e-31 Score=264.24 Aligned_cols=281 Identities=14% Similarity=0.151 Sum_probs=219.2
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhh-ccCChHHHHHHHHHHHHHHHHHHHHhhcC--cc-----cchhHHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVE-AITDPSAFTVVRFALSAIPFIPFVLRARD--DV-----HTRNAGFELGLWVSL 203 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~-~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~-----~~~~~~ll~g~~~~~ 203 (473)
+.+.++.++...+.++...++.|.+. .+++|+.++++|+.++.++++++.+++++ ++ +.+....+.|++++.
T Consensus 11 ~~~~~~~~~~~q~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~ 90 (358)
T PLN00411 11 EAVFLTAMLATETSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSM 90 (358)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHH
Confidence 45678899999999999999999885 48999999999999999999888765432 11 122344556666655
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H------hcCcCchHHHHHHHHHHHHhheeecCCC-----------
Q 011986 204 GYLMQALGLETSDAGRASFISMFTVIVVPLLDG-M------LGAIVPARTWFGAVMSILGVALLESSGS----------- 265 (473)
Q Consensus 204 ~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~------l~er~s~~~~~g~~lal~GV~li~~~~~----------- 265 (473)
.+.++++|+++++++.++++.+++|+++.++++ + +|||+++++++|++++++|++++...++
T Consensus 91 ~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~ 170 (358)
T PLN00411 91 YVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPY 170 (358)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCccccccccccc
Confidence 667899999999999999999999999999999 6 4999999999999999999998764211
Q ss_pred -------------CC--CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCC
Q 011986 266 -------------PP--SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQG 330 (473)
Q Consensus 266 -------------~~--~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 330 (473)
.. ..|++++++++++|++|.++.|+..++.+. .....+++..++++...+.....+......
T Consensus 171 ~~~~~~~~~~~~~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~~~~--~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~- 247 (358)
T PLN00411 171 LNFRQLSPPLSSSNSDWLIGGALLTIQGIFVSVSFILQAHIMSEYPA--AFTVSFLYTVCVSIVTSMIGLVVEKNNPSV- 247 (358)
T ss_pred ccccccccccCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--HhHHHHHHHHHHHHHHHHHHHHHccCCccc-
Confidence 01 238899999999999999999998876553 234555666666655555444432211100
Q ss_pred CCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHH
Q 011986 331 SDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLG 410 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G 410 (473)
|...|+ ..+..+++.+++ +.++|.+|++++++.+|++++++.+++|+++++++++++||++++.+++|
T Consensus 248 -------~~~~~~----~~~~~i~y~~i~-t~lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG 315 (358)
T PLN00411 248 -------WIIHFD----ITLITIVTMAII-TSVYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIG 315 (358)
T ss_pred -------ceeccc----hHHHHHHHHHHH-HHHHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence 000011 013346777765 56899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcCCC
Q 011986 411 AALVLVGSLTVQIFGSS 427 (473)
Q Consensus 411 ~~lIl~g~~l~~~~~~~ 427 (473)
+++|++|+++..+.+++
T Consensus 316 ~~LIl~Gv~l~~~~~~~ 332 (358)
T PLN00411 316 GILITLGFYAVMWGKAN 332 (358)
T ss_pred HHHHHHHHHHHHhhhhh
Confidence 99999999998865443
No 2
>PRK11689 aromatic amino acid exporter; Provisional
Probab=100.00 E-value=7.8e-31 Score=259.02 Aligned_cols=270 Identities=17% Similarity=0.147 Sum_probs=207.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHh
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGL 212 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al 212 (473)
.++++++++++++||.+++..|...++++|+.+.++|+.++.++++++..+++.++..++..+..++.++.++.+++.++
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~~~k~~~~~~~P~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a~ 82 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVGLIRGVSESLGPVGGAAMIYSVSGLLLLLTVGFPRLRQFPKRYLLAGGLLFVSYEICLALSL 82 (295)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHccCChHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHhHHHHHHHHHHHHHH
Confidence 35678899999999999999999999999999999999999998887643222222223333333444445556677777
Q ss_pred hc----cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC------------CCCHHHHHHH
Q 011986 213 ET----SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS------------PPSVGDLLNF 275 (473)
Q Consensus 213 ~~----~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~------------~~~~G~~laL 275 (473)
++ +++++++++.++.|+++.++++ ++|||+++++++|++++++|++++..++. ....|+++++
T Consensus 83 ~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~~~~~G~~~~l 162 (295)
T PRK11689 83 GYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIASNPLSYGLAF 162 (295)
T ss_pred HHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccccChHHHHHHH
Confidence 54 5778899999999999999999 78999999999999999999999876532 1235999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHH
Q 011986 276 LSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALY 355 (473)
Q Consensus 276 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 355 (473)
+++++||.|.++.||..++.+ +..... ....+...+.....+.. . . .+.+ ..|..+++
T Consensus 163 ~aa~~~A~~~v~~k~~~~~~~---~~~~~~---~~~~~~l~~~~~~~~~~---~-~---~~~~---------~~~~~l~~ 220 (295)
T PRK11689 163 IGAFIWAAYCNVTRKYARGKN---GITLFF---ILTALALWIKYFLSPQP---A-M---VFSL---------PAIIKLLL 220 (295)
T ss_pred HHHHHHHHHHHHHhhccCCCC---chhHHH---HHHHHHHHHHHHHhcCc---c-c---cCCH---------HHHHHHHH
Confidence 999999999999999876544 443322 22223333322222110 0 0 1111 24666777
Q ss_pred HHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 356 TGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 356 lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
.+ +.++++|.+|++++|+.++++++.+.|++|+++++++++++||++++.+++|+++|++|+++..+.+
T Consensus 221 ~~-~~t~~~~~l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~~~ 289 (295)
T PRK11689 221 AA-AAMGFGYAAWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWLAT 289 (295)
T ss_pred HH-HHHHHHHHHHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhhhH
Confidence 77 5678999999999999999999999999999999999999999999999999999999998887643
No 3
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=100.00 E-value=5.5e-30 Score=253.50 Aligned_cols=278 Identities=20% Similarity=0.192 Sum_probs=214.3
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHH-HHHHHHHHhhc
Q 011986 136 IILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSL-GYLMQALGLET 214 (473)
Q Consensus 136 ~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~-~~~l~~~al~~ 214 (473)
.++.++++++||.++++.|...++++|..+.++|+.++.+.++++..+++ ..++..+..|+.... .+.+++.++++
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~~~~p~~~~~~R~~~a~~~l~~~~~~~~---~~~~~~~~~g~~~~~~~~~~~~~~~~~ 82 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLHNMPPLMLAGLRFMLVAFPAIFFVARPK---VPLNLLLGYGLTISFGQFAFLFCAINF 82 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhcCCC---CchHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46688999999999999999999999999999999998777666543222 223333444554433 34567888988
Q ss_pred -cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---C-CCHHHHHHHHHHHHHHHHHHHH
Q 011986 215 -SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---P-PSVGDLLNFLSAVFFGIHMLRT 288 (473)
Q Consensus 215 -~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---~-~~~G~~laL~aal~~a~~~i~~ 288 (473)
.+++.++++.++.|+++.++++ ++|||+++++++|++++++|+.++..++. . ...|++++++++++|+.|.++.
T Consensus 83 ~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aal~~a~~~v~~ 162 (299)
T PRK11453 83 GMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAAFSWACGNIFN 162 (299)
T ss_pred cCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHHH
Confidence 5889999999999999999999 78999999999999999999998875421 1 2369999999999999999999
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 011986 289 EHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIE 368 (473)
Q Consensus 289 k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~ 368 (473)
||..++.+.........+...++.+.........+...... . .+...+...|..++++|+++++++|.+|
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~---------~~~~~~~~~~~~l~~l~i~~t~~~~~l~ 232 (299)
T PRK11453 163 KKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMI-H---------SLVTIDMTTILSLMYLAFVATIVGYGIW 232 (299)
T ss_pred HHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhh-h---------hhccCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99876544333344444444444433333322222211000 0 0011122358889999999999999999
Q ss_pred HHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 369 MAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 369 ~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
++++++.++.+++.+.+++|+++.+++++++||++++.+++|+++|++|+++..+.++
T Consensus 233 ~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~~~ 290 (299)
T PRK11453 233 GTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFGLR 290 (299)
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcchh
Confidence 9999999999999999999999999999999999999999999999999988876543
No 4
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=100.00 E-value=3.7e-30 Score=253.88 Aligned_cols=273 Identities=16% Similarity=0.224 Sum_probs=223.8
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcc---cchhHHHHHHHHH-HHHHHHHHH
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDV---HTRNAGFELGLWV-SLGYLMQAL 210 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~---~~~~~~ll~g~~~-~~~~~l~~~ 210 (473)
-++..++..++||.++++.|...++++|.+++++|+.++.++++++...++++. +.+......|.+. ..++.++++
T Consensus 9 ~~~~~~~~~~iWg~~~~~~K~~~~~~~p~~~~~~R~~~a~l~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 88 (292)
T PRK11272 9 LFGALFALYIIWGSTYLVIRIGVESWPPLMMAGVRFLIAGILLLAFLLLRGHPLPTLRQWLNAALIGLLLLAVGNGMVTV 88 (292)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456688889999999999999989999999999999999999888876655332 2233444556654 456778889
Q ss_pred Hh-hccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecCC--CCCCHHHHHHHHHHHHHHHHHHH
Q 011986 211 GL-ETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG--SPPSVGDLLNFLSAVFFGIHMLR 287 (473)
Q Consensus 211 al-~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~~--~~~~~G~~laL~aal~~a~~~i~ 287 (473)
+. ++++++.++++.++.|+++.++++++|||+++++++|++++++|+.++..++ +....|++++++++++||.|.+.
T Consensus 89 ~~~~~~~a~~a~~l~~~~Pl~~~lla~~~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a~~~~~ 168 (292)
T PRK11272 89 AEHQNVPSGIAAVVVATVPLFTLCFSRLFGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWAFGSVW 168 (292)
T ss_pred HHHccCcHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHHHHHHH
Confidence 98 9999999999999999999999997799999999999999999999886542 23357999999999999999999
Q ss_pred HhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHH
Q 011986 288 TEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWI 367 (473)
Q Consensus 288 ~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l 367 (473)
.||..++ + +.....+++.+++++..++....+... . ..+ +...|..+++++++++++++.+
T Consensus 169 ~~~~~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~------------~~~~~~~i~~l~i~~s~~~~~l 229 (292)
T PRK11272 169 SSRLPLP-V---GMMAGAAEMLAAGVVLLIASLLSGERL--T-ALP------------TLSGFLALGYLAVFGSIIAISA 229 (292)
T ss_pred HHhcCCC-c---chHHHHHHHHHHHHHHHHHHHHcCCcc--c-ccC------------CHHHHHHHHHHHHHHHHHHHHH
Confidence 9987543 2 234556777777777666654432211 0 000 1124788999999999999999
Q ss_pred HHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 368 EMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 368 ~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
|++++++.++++++.+.+++|+++.+++++++||++++.+++|+++|+.|+++..+.++
T Consensus 230 ~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 230 YMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999998876544
No 5
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.98 E-value=6.6e-30 Score=252.52 Aligned_cols=275 Identities=15% Similarity=0.091 Sum_probs=204.4
Q ss_pred hccchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc------ccchhH---HHHHHH
Q 011986 129 ASKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD------VHTRNA---GFELGL 199 (473)
Q Consensus 129 ~~~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~------~~~~~~---~ll~g~ 199 (473)
|+++.+|.+++++++++||.++++.|.. ++++|.+++++|+.++.+++++++..+++. .+.++. .+..++
T Consensus 3 ~~~~~~g~~~~l~a~~~wg~~~~~~k~~-~~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (296)
T PRK15430 3 AKQTRQGVLLALAAYFIWGIAPAYFKLI-YYVPADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSAV 81 (296)
T ss_pred chhhhhHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHHH
Confidence 3456789999999999999999999986 679999999999999998877776543221 111222 223345
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHH
Q 011986 200 WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSA 278 (473)
Q Consensus 200 ~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aa 278 (473)
..+.++.++++|++++++++++++.++.|+++.++++ ++|||+++++++|++++++|++++..+++.. .+++++++
T Consensus 82 ~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~---~~~~l~aa 158 (296)
T PRK15430 82 LIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSL---PIIALGLA 158 (296)
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCc---cHHHHHHH
Confidence 5677899999999999999999999999999999999 8899999999999999999999987543222 25789999
Q ss_pred HHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986 279 VFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI 358 (473)
Q Consensus 279 l~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~ 358 (473)
++||.|.+..|+..++.. .+......+...++.+. .+....... ....... + .+..+++.++
T Consensus 159 ~~~a~~~i~~r~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~-~~~~~~~--~----------~~~~~~~~~g 220 (296)
T PRK15430 159 FSFAFYGLVRKKIAVEAQ-TGMLIETMWLLPVAAIY----LFAIADSST-SHMGQNP--M----------SLNLLLIAAG 220 (296)
T ss_pred HHHHHHHHHHHhcCCCCc-hhHHHHHHHHHHHHHHH----HHHHccCCc-ccccCCc--H----------HHHHHHHHHH
Confidence 999999999988753211 12222222222222222 111111100 0000000 0 1223344444
Q ss_pred HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
+.+.++|.+|++++++.++++++.+.|++|+++.+++++++||++++.+++|+++|++|+.+.....
T Consensus 221 ~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~~~~~ 287 (296)
T PRK15430 221 IVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIFVMDA 287 (296)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4677999999999999999999999999999999999999999999999999999999988776544
No 6
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.97 E-value=3.7e-29 Score=246.86 Aligned_cols=271 Identities=18% Similarity=0.204 Sum_probs=218.3
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC--cccchhHHHHHHHHHHHHHHHH
Q 011986 131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD--DVHTRNAGFELGLWVSLGYLMQ 208 (473)
Q Consensus 131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~~~~~~~ll~g~~~~~~~~l~ 208 (473)
++.+++.+++++.++|+.++.+.|.+.++++|.++.++|++++.++++++...++. +++.++..+..|++.+..+.++
T Consensus 9 ~~~~~~~~~~la~~~~~~~~~~~K~~~~~~~~~~~~~~R~~~a~l~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 88 (293)
T PRK10532 9 PVWLPILLLLIAMASIQSGASLAKSLFPLVGAPGVTALRLALGTLILIAIFKPWRLRFAKEQRLPLLFYGVSLGGMNYLF 88 (293)
T ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhHHhccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 34678999999999999999999999999999999999999999988877654332 2344555667788888888899
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecCC----CCCCHHHHHHHHHHHHHHHH
Q 011986 209 ALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG----SPPSVGDLLNFLSAVFFGIH 284 (473)
Q Consensus 209 ~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~~----~~~~~G~~laL~aal~~a~~ 284 (473)
++++++++++.++++.++.|+++.+++. ||..+ +.++.++++|+.++..++ +....|++++++++++|+.|
T Consensus 89 ~~al~~~~~~~a~~l~~t~Pi~~~ll~~---~~~~~--~~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~a~~ 163 (293)
T PRK10532 89 YLSIQTVPLGIAVALEFTGPLAVALFSS---RRPVD--FVWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACWAIY 163 (293)
T ss_pred HHHHhcccHHHHHHHHHHHHHHHHHHhc---CChHH--HHHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988763 65544 455678899999876432 22346999999999999999
Q ss_pred HHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986 285 MLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC 364 (473)
Q Consensus 285 ~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~ 364 (473)
.+..||..++.+ +... .+..++++++..++....+. . . .+.+ ..|..++++|+++++++
T Consensus 164 ~v~~r~~~~~~~---~~~~-~~~~~~~~~~l~~~~~~~~~----~--~--~~~~---------~~~~~~l~lgv~~t~~~ 222 (293)
T PRK10532 164 ILSGQRAGAEHG---PATV-AIGSLIAALIFVPIGALQAG----E--A--LWHW---------SILPLGLAVAILSTALP 222 (293)
T ss_pred HHHHHHHhccCC---chHH-HHHHHHHHHHHHHHHHHccC----c--c--cCCH---------HHHHHHHHHHHHHHHHH
Confidence 999999876544 4444 34455666666555443221 0 0 0111 13556789999999999
Q ss_pred HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
|.+|++++++.++++++.+.+++|+++.+++++++||.+++.+++|+++|++|+++..+..++
T Consensus 223 ~~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~~~~~ 285 (293)
T PRK10532 223 YSLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTLTIRR 285 (293)
T ss_pred HHHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999999999999999999999999999999876544
No 7
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.97 E-value=5.6e-28 Score=234.19 Aligned_cols=254 Identities=20% Similarity=0.287 Sum_probs=209.8
Q ss_pred HhhHHHHHHHhhc-cCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHH-HHHHHHHHHHHhhccchhHHHHH
Q 011986 146 YASNIPVIKEVEA-ITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLW-VSLGYLMQALGLETSDAGRASFI 223 (473)
Q Consensus 146 wg~~~~~~k~~~~-~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~-~~~~~~l~~~al~~~~~~~asvi 223 (473)
||.+++..|...+ ..++.++.+.|+..+.+++.++..++ ++++.+.+.+..|.+ ...++.++++|++++++++++++
T Consensus 1 Wg~~~~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 1 WGTTGVVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR-PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred CcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc-cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 8999999999865 68899999999999988888776555 344444455555544 57778999999999999999999
Q ss_pred HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC--CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCc
Q 011986 224 SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG--SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDF 300 (473)
Q Consensus 224 ~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~--~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~ 300 (473)
.++.|+++.++++ ++|||+++++++|++++++|++++..++ +....|++++++++++|+.+.+..|+..++.+ .+.
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~-~~~ 158 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEG-PEL 158 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCC-chH
Confidence 9999999999999 7899999999999999999999887543 34457999999999999999999999876543 223
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHH
Q 011986 301 LPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATET 380 (473)
Q Consensus 301 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~ 380 (473)
.....+.+.++.++..+.....+.... . . ...|..++++++++++++|.+|++++++.+++++
T Consensus 159 ~~~~~~~~~~~~~~l~~~~~~~~~~~~---~-----~---------~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 221 (260)
T TIGR00950 159 LQFTGWVLLLGALLLLPFAWFLGPNPQ---A-----L---------SLQWGALLYLGLIGTALAYFLWNKGLTLVDPSAA 221 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCC---c-----c---------hHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHH
Confidence 344446677777777777655432110 0 0 1247778999999999999999999999999999
Q ss_pred HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHH
Q 011986 381 AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGS 418 (473)
Q Consensus 381 s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~ 418 (473)
+.+.+++|+++.+++++++||++++.+++|+++++.|+
T Consensus 222 s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 222 SILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999985
No 8
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=99.96 E-value=9.4e-31 Score=240.07 Aligned_cols=276 Identities=14% Similarity=0.127 Sum_probs=225.9
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHH
Q 011986 131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRAR----DDVHTRNAGFELGLWVSLGYL 206 (473)
Q Consensus 131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~----~~~~~~~~~ll~g~~~~~~~~ 206 (473)
++.+|.++..++.++-..+.+..|.+ ..+|.+..-.|++.-.+...+....++ .+...|++++++|++++.+.+
T Consensus 35 ~p~~gl~l~~vs~ff~~~~vv~t~~~--e~~p~e~a~~r~l~~mlit~pcliy~~~~v~gp~g~R~~LiLRg~mG~tgvm 112 (346)
T KOG4510|consen 35 KPNLGLLLLTVSYFFNSCMVVSTKVL--ENDPMELASFRLLVRMLITYPCLIYYMQPVIGPEGKRKWLILRGFMGFTGVM 112 (346)
T ss_pred CCccCceehhhHHHHhhHHHhhhhhh--ccChhHhhhhhhhhehhhhheEEEEEeeeeecCCCcEEEEEeehhhhhhHHH
Confidence 56778888888855555555554543 478999998887766666665555443 345568888999999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---------------CCCHH
Q 011986 207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---------------PPSVG 270 (473)
Q Consensus 207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---------------~~~~G 270 (473)
+.|||++|++.++|++|.+++|+|+.+++| +|||++++.+.++.++.+.||+++..+.. ....|
T Consensus 113 lmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~g 192 (346)
T KOG4510|consen 113 LMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPG 192 (346)
T ss_pred HHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCc
Confidence 999999999999999999999999999999 99999999999999999999999987532 23578
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986 271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW 350 (473)
Q Consensus 271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
...++.++++.|..+++.|+++|+.| .+....|..++..+..++.....+....+. ...+|
T Consensus 193 t~aai~s~lf~asvyIilR~iGk~~h---~~msvsyf~~i~lV~s~I~~~~ig~~~lP~----------------cgkdr 253 (346)
T KOG4510|consen 193 TVAAISSVLFGASVYIILRYIGKNAH---AIMSVSYFSLITLVVSLIGCASIGAVQLPH----------------CGKDR 253 (346)
T ss_pred hHHHHHhHhhhhhHHHHHHHhhcccc---EEEEehHHHHHHHHHHHHHHhhccceecCc----------------cccce
Confidence 99999999999999999999999877 454555666666666666654444221111 12247
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986 351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~ 428 (473)
.+++.+|+++. ++|++.++++|++.|..++++.|++.++++++++++|||.|+++.|.|+++|+.+.+++...|...
T Consensus 254 ~l~~~lGvfgf-igQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~~a~~kwa~ 330 (346)
T KOG4510|consen 254 WLFVNLGVFGF-IGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVWVALKKWAG 330 (346)
T ss_pred EEEEEehhhhh-HHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHHHHHHHHhc
Confidence 77889999988 999999999999999999999999999999999999999999999999999999999988765543
No 9
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=99.96 E-value=3.7e-27 Score=221.39 Aligned_cols=271 Identities=18% Similarity=0.182 Sum_probs=228.7
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC---------cccchhHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD---------DVHTRNAGFELGLWVS 202 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~---------~~~~~~~~ll~g~~~~ 202 (473)
.++|+++.+.+.++||..+.+.|.+ ++.++.++..+|..++.++++.++...|+ +++......+.+++++
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~~~~p~~~~~~~l~a~li~ 83 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-EPLPATEILAHRVIWSFPFMLALLFLLRQWRELKQLLKQPKTLLMLALTALLIG 83 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-ccCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhCcHHHHHHHHHHHHHH
Confidence 3579999999999999999999997 78999999999999999998877765432 2223334456688899
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC-CCCCCHHHHHHHHHHHH
Q 011986 203 LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS-GSPPSVGDLLNFLSAVF 280 (473)
Q Consensus 203 ~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~-~~~~~~G~~laL~aal~ 280 (473)
.++..|.||..+..+-++++.++++|++.++++. ++|||+++.|+++++++.+||...... |+.+ +.++.-+++
T Consensus 84 ~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lp----wval~la~s 159 (293)
T COG2962 84 LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLP----WVALALALS 159 (293)
T ss_pred HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCc----HHHHHHHHH
Confidence 9999999999999999999999999999999999 899999999999999999999987764 5555 678888899
Q ss_pred HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHH
Q 011986 281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIF 359 (473)
Q Consensus 281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~ 359 (473)
|+.|..+-|++ +++..+....+++...+.++.+.+..+..+. ....... .|.+ +..++.
T Consensus 160 f~~Ygl~RK~~-----~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~~~~~~~~~--------------~~~L-Lv~aG~ 219 (293)
T COG2962 160 FGLYGLLRKKL-----KVDALTGLTLETLLLLPVALIYLLFLADSGQFLQQNANS--------------LWLL-LVLAGL 219 (293)
T ss_pred HHHHHHHHHhc-----CCchHHhHHHHHHHHhHHHHHHHHHHhcCchhhhcCCch--------------HHHH-HHHhhH
Confidence 99999885444 5678889999999999999998887776553 1111111 2444 445555
Q ss_pred HHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 360 STGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 360 ~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
.++++..++..|.++++-+..+.++|++|....+++++++||+++..++.+.+.|+.|.+++.....+
T Consensus 220 vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d~l~ 287 (293)
T COG2962 220 VTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSIDGLY 287 (293)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56699999999999999999999999999999999999999999999999999999999998876543
No 10
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.95 E-value=1.5e-25 Score=225.94 Aligned_cols=283 Identities=12% Similarity=0.102 Sum_probs=216.5
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcC---cc----cchhHHHHHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARD---DV----HTRNAGFELGLWVSLGY 205 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~---~~----~~~~~~ll~g~~~~~~~ 205 (473)
+-.++.+.-..+-.......|.+++.++ |+.++.+|++++.+++.+++..+.+ +. ..++..+..|++....+
T Consensus 49 ~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~~~ 128 (350)
T PTZ00343 49 KLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLFVH 128 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444445667799999999 9999999999998876655432211 11 13445678899888888
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCC-HHHHHHHHHHHHHHH
Q 011986 206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPS-VGDLLNFLSAVFFGI 283 (473)
Q Consensus 206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~-~G~~laL~aal~~a~ 283 (473)
...+.|+++++++.++++..+.|++++++++ ++|||++++++++++++++||++....+..++ .|+++++++++++++
T Consensus 129 ~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~ 208 (350)
T PTZ00343 129 FGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGSSL 208 (350)
T ss_pred HHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHHHH
Confidence 8888999999999999999999999999999 89999999999999999999999887654444 599999999999999
Q ss_pred HHHHHhhhhhcCC----CCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHH
Q 011986 284 HMLRTEHISRSTN----KKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIF 359 (473)
Q Consensus 284 ~~i~~k~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~ 359 (473)
|.+..|+..++.+ +.++.....+..++++++.+|+....+....... |...........+..+++ .++
T Consensus 209 ~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~-------~~~~~~~~~~~~~~~~l~-~i~ 280 (350)
T PTZ00343 209 RSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPV-------WTNYTANMTNYTKGIIIF-KIF 280 (350)
T ss_pred HHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHH-------HHHhhhcccccchHHHHH-HHH
Confidence 9999999876543 3456666677788888888888764432110000 000000000001223344 455
Q ss_pred HHHHHHHHHHH----HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 360 STGLCLWIEMA----AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 360 ~~~~~~~l~~~----al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.+++.+.+|+. +++++++.+.++..+++|+++++++++++||++++.+++|++++++|++++++.
T Consensus 281 ~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs~~ 349 (350)
T PTZ00343 281 FSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYSLF 349 (350)
T ss_pred HHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHhhc
Confidence 56788999985 999999999999999999999999999999999999999999999999998764
No 11
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.95 E-value=2.8e-26 Score=227.47 Aligned_cols=273 Identities=12% Similarity=0.083 Sum_probs=207.6
Q ss_pred hHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHh--hcC---cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHH
Q 011986 148 SNIPVIKEVEAI-TDPSAFTVVRFALSAIPFIPFVLR--ARD---DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRAS 221 (473)
Q Consensus 148 ~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~~~~~~~~--~~~---~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~as 221 (473)
...+++|.+.++ ..|..+++.|+.++.+.+.+.... +++ +++.++..+..|++++.++.+.++++++++++.++
T Consensus 16 ~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~s~s~~~ 95 (302)
T TIGR00817 16 YFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTSNVSLSKVAVSFTH 95 (302)
T ss_pred HHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHH
Confidence 334678999887 569999999999998777665221 111 33456667788999888899999999999999999
Q ss_pred HHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC
Q 011986 222 FISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKD 299 (473)
Q Consensus 222 vi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~ 299 (473)
++..+.|++++++++ ++|||+++++++|++++++|+++....+..+ ..|++++++++++|++|.+..||..++ .+.+
T Consensus 96 li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v~~k~~~~~-~~~~ 174 (302)
T TIGR00817 96 TIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNIFSKKAMTI-KSLD 174 (302)
T ss_pred HHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcc-CCCC
Confidence 999999999999999 8899999999999999999998766544333 459999999999999999999988662 2356
Q ss_pred chhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhh-hcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChh
Q 011986 300 FLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMF-WDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSAT 378 (473)
Q Consensus 300 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~ 378 (473)
+.....++...+++.+.|+....+....... .+... +.+.....+...++.+.....+.+.++++++++.+++
T Consensus 175 ~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~sa~ 248 (302)
T TIGR00817 175 KTNLYAYISIMSLFLLSPPAFITEGPPFLPH------GFMQAISGVNVTKIYTVSLVAAMGFFHFYQQVAFMLLGRVSPL 248 (302)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHcchHHHHH------HHHHhhcccCchHHHHHHHHHHHHHHHHHHHHHHHHHccCCch
Confidence 7888999998998888888765543211100 00000 0000000122122333323333345666899999999
Q ss_pred HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 379 ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 379 ~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
++++..+++|+++++++++++||++++.+++|++++++|+++++..|.+
T Consensus 249 t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~~k~~ 297 (302)
T TIGR00817 249 THSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSRVKAQ 297 (302)
T ss_pred HHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999876543
No 12
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.95 E-value=2.1e-25 Score=215.85 Aligned_cols=241 Identities=12% Similarity=0.109 Sum_probs=179.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC------ccc--chh----HHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD------DVH--TRN----AGFELGLWV 201 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~------~~~--~~~----~~ll~g~~~ 201 (473)
+|++++++++++||.++++.|.+ ++++|.+++++|++++.++++++...+++ +.+ .++ ...+.|+++
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 80 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-KPLPATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLCGLLI 80 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHHHHHH
Confidence 47899999999999999999984 57999999999999999887776533221 111 111 234567778
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHH
Q 011986 202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVF 280 (473)
Q Consensus 202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~ 280 (473)
+.++.++++|++++++++++++.++.|+++.++++ ++|||++++++++++++++|++++..+++.. .+++++++++
T Consensus 81 ~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~---~~~~l~aa~~ 157 (256)
T TIGR00688 81 GFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSL---PWEALVLAFS 157 (256)
T ss_pred HHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHH
Confidence 88899999999999999999999999999999999 8999999999999999999999876543222 1568999999
Q ss_pred HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHH
Q 011986 281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFS 360 (473)
Q Consensus 281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~ 360 (473)
|++|.+..|+..++ + ...... ..+.......+.....+... ...... ...|..++++|++
T Consensus 158 ~a~~~i~~~~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~-------------~~~~~~l~~~g~~- 217 (256)
T TIGR00688 158 FTAYGLIRKALKNT-D---LAGFCL-ETLSLMPVAIYYLLQTDFAT-VQQTNP-------------FPIWLLLVLAGLI- 217 (256)
T ss_pred HHHHHHHHhhcCCC-C---cchHHH-HHHHHHHHHHHHHHHhccCc-ccccCc-------------hhHHHHHHHHHHH-
Confidence 99999999987543 2 111111 11111222222211111110 000000 0136777788876
Q ss_pred HHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHH
Q 011986 361 TGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFI 398 (473)
Q Consensus 361 ~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il 398 (473)
+.++|.+|++++++.++++++++.|++|+++.+++.++
T Consensus 218 t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 218 TGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 77999999999999999999999999999999999865
No 13
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.94 E-value=1e-24 Score=214.02 Aligned_cols=267 Identities=15% Similarity=0.126 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh--cCcc-----cchhHHHHHHHHHHHHHHHH
Q 011986 136 IILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA--RDDV-----HTRNAGFELGLWVSLGYLMQ 208 (473)
Q Consensus 136 ~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~--~~~~-----~~~~~~ll~g~~~~~~~~l~ 208 (473)
+++.++++++|+..++..|...+.-++. .+++...+.+.+.++..++ +... +.+...+..++....++.++
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFLGL 80 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHHHH
Confidence 5688999999999999999665544443 4667777777777766553 1111 11223344566677888999
Q ss_pred HHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC--CCCHHHHHHHHHHHHHHHHH
Q 011986 209 ALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS--PPSVGDLLNFLSAVFFGIHM 285 (473)
Q Consensus 209 ~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~--~~~~G~~laL~aal~~a~~~ 285 (473)
++|+++.+++.++++.++.|+++.++++ ++|||+++++++|++++++|++++..++. ....|+.++++++++|++|.
T Consensus 81 ~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~~~ 160 (281)
T TIGR03340 81 AQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAIYS 160 (281)
T ss_pred HHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999 89999999999999999999998775432 23467889999999999999
Q ss_pred HHHhhhhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986 286 LRTEHISRSTNKK-DFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC 364 (473)
Q Consensus 286 i~~k~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~ 364 (473)
++.|+..++.++. +......+.....++...+.....+.. .. ... ...+..+++.+++.++++
T Consensus 161 i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~------------~~~~~~~~~~~~~~s~l~ 224 (281)
T TIGR03340 161 LSDKAAALGVPAFYSALGYLGIGFLAMGWPFLLLYLKRHGR-SM---FPY------------ARQILPSATLGGLMIGGA 224 (281)
T ss_pred hhccccccchhcccccHHHHHHHHHHHHHHHHHHHHHHhcc-ch---hhh------------HHHHHHHHHHHHHHHHHH
Confidence 9988765433321 112222222222212211211111110 00 000 012556788888999999
Q ss_pred HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986 365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT 420 (473)
Q Consensus 365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l 420 (473)
|.+|++++++.++++++.+.|++|+++.+++++++||+++..+++|+++|++|+++
T Consensus 225 ~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 225 YALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 99999999999999999999999999999999999999999999999999999875
No 14
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.92 E-value=4e-22 Score=195.46 Aligned_cols=271 Identities=24% Similarity=0.323 Sum_probs=211.6
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhcc-CChHHHHHHHHHHHHHHHHHHHHhhc--Ccccch---hHHHHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAI-TDPSAFTVVRFALSAIPFIPFVLRAR--DDVHTR---NAGFELGLWVSLGY 205 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~-~~p~~~~~~R~~~a~l~~~~~~~~~~--~~~~~~---~~~ll~g~~~~~~~ 205 (473)
...+....++..+.|+.+....|...++ .++....+.|...+.+...+...+++ .....+ ...+..++....++
T Consensus 5 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (292)
T COG0697 5 LLLGLLALLLWGLLWGLSFIALKLAVESLDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPF 84 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHH
Confidence 4567788888889999999999998776 67777778899999888544444332 112122 23344455567778
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H-hcCcCchHHHHHHHHHHHHhheeecCCCCC----CHHHHHHHHHHH
Q 011986 206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-M-LGAIVPARTWFGAVMSILGVALLESSGSPP----SVGDLLNFLSAV 279 (473)
Q Consensus 206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~-l~er~s~~~~~g~~lal~GV~li~~~~~~~----~~G~~laL~aal 279 (473)
.+++.++++++++.++++.++.|+++.++++ + +|||++++++++++++++|++++..++... ..|+++++++++
T Consensus 85 ~~~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~ 164 (292)
T COG0697 85 LLLFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAAL 164 (292)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 4 499999999999999999999999876543 479999999999
Q ss_pred HHHHHHHHHhhhhhcCCCCCchhHHH-HHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986 280 FFGIHMLRTEHISRSTNKKDFLPLLG-YEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI 358 (473)
Q Consensus 280 ~~a~~~i~~k~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~ 358 (473)
+++++.+..|+.. +.+ +..... +... ............... .+ . ....|..+.+.|+
T Consensus 165 ~~a~~~~~~~~~~-~~~---~~~~~~~~~~~--~~~~~~~~~~~~~~~-----~~--~---------~~~~~~~~~~~g~ 222 (292)
T COG0697 165 LWALYTALVKRLS-RLG---PVTLALLLQLL--LALLLLLLFFLSGFG-----AP--I---------LSRAWLLLLYLGV 222 (292)
T ss_pred HHHHHHHHHHHhc-CCC---hHHHHHHHHHH--HHHHHHHHHHhcccc-----cc--C---------CHHHHHHHHHHHH
Confidence 9999999999886 322 333333 3332 111111111111111 00 0 1124788899999
Q ss_pred HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
+++++++.+|++++++.++..++.+.+++|+++.+++++++||.++..+++|+++|++|+++....
T Consensus 223 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 223 FSTGLAYLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 999899999999999999999999999999999999999999999999999999999999988765
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.92 E-value=8.4e-23 Score=201.50 Aligned_cols=280 Identities=18% Similarity=0.179 Sum_probs=216.4
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhc-cCC-hHHHHHHHHHHHHHHHHHHHHhhcCc-------ccchhHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEA-ITD-PSAFTVVRFALSAIPFIPFVLRARDD-------VHTRNAGFELGLWVS 202 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~-~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~-------~~~~~~~ll~g~~~~ 202 (473)
..+.+++.-+.+++-..+......+.+ +.+ |..-.++-++.-.++..++..+|+.. ++.+++.++.+++-.
T Consensus 11 ~~~~~~lgQ~lsl~~~~t~~~s~~l~~~~~~~P~~Qs~~~Y~~l~~vy~~~~~~r~~~~~~~~~~~~~~w~y~lla~~Dv 90 (334)
T PF06027_consen 11 FWIVLLLGQVLSLCITGTGTFSSLLANKGVNIPTFQSFFNYVLLALVYTPILLYRRGFKKWLKVLKRPWWKYFLLALLDV 90 (334)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhcCccCcHHHHHHHHHHHHHHHhhhhhhccccccchhhcchhHHHHHHHHHHHH
Confidence 345677777778888888888877743 233 55555666655555555555544322 234555678899999
Q ss_pred HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC----------CCCCHHH
Q 011986 203 LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG----------SPPSVGD 271 (473)
Q Consensus 203 ~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~----------~~~~~G~ 271 (473)
.++++.+.|++|++++.++++....-.+++++++ ++|+|+++.+++|++++++|++++...| .....|+
T Consensus 91 ~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~~~~~~~~~~~~i~GD 170 (334)
T PF06027_consen 91 EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVLSGSDSSSGSNPILGD 170 (334)
T ss_pred HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecccccccCCCCCccchhH
Confidence 9999999999999999999999999999999999 8999999999999999999999877542 2346899
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHH
Q 011986 272 LLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWI 351 (473)
Q Consensus 272 ~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 351 (473)
++++++++.||+++++.++..++.+ ...+.++..+++.++..+.....+...... ..|.+. ..
T Consensus 171 ll~l~~a~lya~~nV~~E~~v~~~~---~~~~lg~~Glfg~ii~~iq~~ile~~~i~~----~~w~~~----------~~ 233 (334)
T PF06027_consen 171 LLALLGAILYAVSNVLEEKLVKKAP---RVEFLGMLGLFGFIISGIQLAILERSGIES----IHWTSQ----------VI 233 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCC---HHHHHHHHHHHHHHHHHHHHHheehhhhhc----cCCChh----------hH
Confidence 9999999999999999999888655 566777778888888877766554322111 112211 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986 352 PALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 352 ~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~ 428 (473)
.++....++..+-|.+....++..+|+..++-..+..+++++++++++|+.+++..++|.++|++|.+++....++.
T Consensus 234 ~~~v~~~~~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~~~~ 310 (334)
T PF06027_consen 234 GLLVGYALCLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAESPE 310 (334)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccCCcc
Confidence 23333334455667788889999999999999999999999999999999999999999999999999988765543
No 16
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=99.89 E-value=6.8e-21 Score=174.46 Aligned_cols=268 Identities=21% Similarity=0.201 Sum_probs=215.7
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHh
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGL 212 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al 212 (473)
.+++++.+.+.--....+.|.+...++|..++.+|..++.++++++++.. +..++++++.+..|......+++||.++
T Consensus 13 p~~~ll~amvsiq~Gas~Ak~LFP~vG~~g~t~lRl~~aaLIll~l~RPwr~r~~~~~~~~~~~yGvsLg~MNl~FY~si 92 (292)
T COG5006 13 PILALLVAMVSIQSGASFAKSLFPLVGAAGVTALRLAIAALILLALFRPWRRRLSKPQRLALLAYGVSLGGMNLLFYLSI 92 (292)
T ss_pred cHHHHHHHHHHHHhhHHHHHHHccccChhhHHHHHHHHHHHHHHHHhhHHHhccChhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666677889988999999999999999999998887643 3456778888889999999999999999
Q ss_pred hccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecC----CCCCCHHHHHHHHHHHHHHHHHHHH
Q 011986 213 ETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESS----GSPPSVGDLLNFLSAVFFGIHMLRT 288 (473)
Q Consensus 213 ~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~----~~~~~~G~~laL~aal~~a~~~i~~ 288 (473)
+..|.+.+..|-|+-|+...++.. +|. +..+-+.+++.|+.++... +..+..|..+++.++.||+.|.+..
T Consensus 93 ~riPlGiAVAiEF~GPL~vA~~~s---Rr~--~d~vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G 167 (292)
T COG5006 93 ERIPLGIAVAIEFTGPLAVALLSS---RRL--RDFVWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLG 167 (292)
T ss_pred HhccchhhhhhhhccHHHHHHHhc---cch--hhHHHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHc
Confidence 999999999999999998877543 333 3445566678888776653 3456799999999999999999999
Q ss_pred hhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHH
Q 011986 289 EHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIE 368 (473)
Q Consensus 289 k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~ 368 (473)
+|..+..+ .-....+.+.+.+++.+|+........ .+.+ .-...-+.+|++++.+.|.+-
T Consensus 168 ~r~g~~~~---g~~g~a~gm~vAaviv~Pig~~~ag~~--------l~~p---------~ll~laLgvavlSSalPYsLE 227 (292)
T COG5006 168 QRAGRAEH---GTAGVAVGMLVAALIVLPIGAAQAGPA--------LFSP---------SLLPLALGVAVLSSALPYSLE 227 (292)
T ss_pred chhcccCC---CchHHHHHHHHHHHHHhhhhhhhcchh--------hcCh---------HHHHHHHHHHHHhcccchHHH
Confidence 99987555 344666677778888777755332211 1111 125566889999999999999
Q ss_pred HHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 369 MAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 369 ~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
+.++++.+....+.+..++|.++.+.|++++||.+++.||+|++.|+++..-..+.-+|
T Consensus 228 miAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsaG~~lt~~~ 286 (292)
T COG5006 228 MIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASAGSTLTARK 286 (292)
T ss_pred HHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccccccCC
Confidence 99999999999999999999999999999999999999999999999998766654433
No 17
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=99.87 E-value=1.2e-19 Score=178.60 Aligned_cols=264 Identities=14% Similarity=0.141 Sum_probs=202.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc----ccchhHHHHHHHHHHHHHHHHHH
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD----VHTRNAGFELGLWVSLGYLMQAL 210 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~----~~~~~~~ll~g~~~~~~~~l~~~ 210 (473)
++++.++++++||.+.+..|... +.++.++. |..++.+++..+....+.+ ++.+...++.|++...++++++.
T Consensus 2 ~~l~~lia~~~wGs~g~~~k~~~-g~~~~~~~--~~~~g~l~~~~~~~~~~~~~~~~~~~~~~g~l~G~~w~ig~~~~~~ 78 (290)
T TIGR00776 2 DILIALIPALFWGSFVLINVKIG-GGPYSQTL--GTTFGALILSIAIAIFVLPEFWALSIFLVGLLSGAFWALGQINQFK 78 (290)
T ss_pred chHHHHHHHHHHhhhHHHHhccC-CCHHHHHH--HHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHHHhhhhhHHH
Confidence 57899999999999999999875 78887775 7777777766554443322 22233455667778888899999
Q ss_pred HhhccchhHHHHHHH-HHHHHHHHHHH-HhcCcCchHH----HHHHHHHHHHhheeecCC---------CCCCHHHHHHH
Q 011986 211 GLETSDAGRASFISM-FTVIVVPLLDG-MLGAIVPART----WFGAVMSILGVALLESSG---------SPPSVGDLLNF 275 (473)
Q Consensus 211 al~~~~~~~asvi~~-l~Pl~~~ll~~-~l~er~s~~~----~~g~~lal~GV~li~~~~---------~~~~~G~~laL 275 (473)
++++++++.+..+.+ +.+++..+.+. ++||+.++++ .+|++++++|++++...+ .....|.++++
T Consensus 79 ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~Gi~~~l 158 (290)
T TIGR00776 79 SMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKKGILLLL 158 (290)
T ss_pred HHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhhHHHHHH
Confidence 999999999999988 88888888898 8999999999 999999999999987532 11258999999
Q ss_pred HHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHH
Q 011986 276 LSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALY 355 (473)
Q Consensus 276 ~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~ 355 (473)
+++++|+.|.+..|+.. .++.+......+..++++++..+.. . . . .+ +. .+.+...+.
T Consensus 159 ~sg~~y~~~~~~~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~-~--~-~-----~~--~~---------~~~~~~~~~ 216 (290)
T TIGR00776 159 MSTIGYLVYVVVAKAFG--VDGLSVLLPQAIGMVIGGIIFNLGH-I--L-A-----KP--LK---------KYAILLNIL 216 (290)
T ss_pred HHHHHHHHHHHHHHHcC--CCcceehhHHHHHHHHHHHHHHHHH-h--c-c-----cc--hH---------HHHHHHHHH
Confidence 99999999999998762 3333322224444444444333322 0 0 0 00 00 012333444
Q ss_pred HHHHHHHHHHHHHHHHhc-ccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986 356 TGIFSTGLCLWIEMAAMR-DVSATETAIIYGLEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF 424 (473)
Q Consensus 356 lg~~~~~~~~~l~~~al~-~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~ 424 (473)
.|++ .++++.+|..+.+ +.+++.++.+.+++|+.+.+++++++||..++.++ +|+++|+.|+++....
T Consensus 217 ~Gi~-~~ia~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~~ 289 (290)
T TIGR00776 217 PGLM-WGIGNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGIG 289 (290)
T ss_pred HHHH-HHHHHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhcc
Confidence 7777 6899999999999 99999999999999999999999999999999999 9999999999887653
No 18
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.86 E-value=2.8e-20 Score=179.37 Aligned_cols=286 Identities=17% Similarity=0.179 Sum_probs=233.1
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccC---ChHHHHHHHHHHHHHHHHHHH----Hhh----c---------C-----
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAIT---DPSAFTVVRFALSAIPFIPFV----LRA----R---------D----- 186 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~---~p~~~~~~R~~~a~l~~~~~~----~~~----~---------~----- 186 (473)
...|+.++++..++|-.+.-+.+.+.+.- .|+.+++.....-.+.+.++. .++ | .
T Consensus 12 ~~lGl~lL~~V~viWV~SSeLT~~if~~~~f~kPFfiTY~~ts~fivYL~~~~~~d~~~~~~~~R~~~~~~~~~~e~d~e 91 (416)
T KOG2765|consen 12 WTLGLVLLLLVVVIWVASSELTQSIFEDYNFRKPFFITYLKTSLFIVYLPPFILIDAPWRILETRSKRSNHAIMEEADAE 91 (416)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHhhcccCCceeEeeecccceehhhhhhhhhcchhhhhhhhccccchhhhhhhhhh
Confidence 45899999999999999999999886533 488888877665555554433 111 0 0
Q ss_pred ------------------------------c------------------ccch---------------hHHHHHHHHHHH
Q 011986 187 ------------------------------D------------------VHTR---------------NAGFELGLWVSL 203 (473)
Q Consensus 187 ------------------------------~------------------~~~~---------------~~~ll~g~~~~~ 203 (473)
+ .+.+ +..+..+.+.+.
T Consensus 92 ~y~~~~~~~~~~~~~l~~~~~~~~~~~~l~s~~~~~~~s~~~e~~~~~~~~~rs~l~~~~~~t~~~~ak~sl~fc~lWF~ 171 (416)
T KOG2765|consen 92 GYFSACTTDKTMESGLSGPESVPDKSPLLGSGEEEKPESTNLEVREKANTKKRSNLKERGKLTATQTAKLSLFFCPLWFL 171 (416)
T ss_pred ccccccccccccccccCCceeeeccccccccccccCCCCccccccccCCcccccchhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 0 0011 123455777889
Q ss_pred HHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC---------CCCHHHHH
Q 011986 204 GYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS---------PPSVGDLL 273 (473)
Q Consensus 204 ~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~---------~~~~G~~l 273 (473)
+++.++.|+.+++++..+++..++-+|+.+++. +.+||+++.+.++++++++||+++..+++ ....|+++
T Consensus 172 anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~~llG~ll 251 (416)
T KOG2765|consen 172 ANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASRPLLGNLL 251 (416)
T ss_pred HHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccchhHHHHH
Confidence 999999999999999999999999999999999 66899999999999999999999986532 34689999
Q ss_pred HHHHHHHHHHHHHHHhhhhhcC-CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHH
Q 011986 274 NFLSAVFFGIHMLRTEHISRST-NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIP 352 (473)
Q Consensus 274 aL~aal~~a~~~i~~k~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 352 (473)
++++|+.||.|.++.||-..+. .+++.-.++++..++..++++|.+++........+..|... ....
T Consensus 252 aL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~------------q~~~ 319 (416)
T KOG2765|consen 252 ALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSST------------QFSL 319 (416)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCc------------eeEe
Confidence 9999999999999999877666 57888888888889999999988777665544444443332 3456
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 353 ALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 353 ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
++..+.++++++-++|.+|+-..++..+++.+.+++..+++.+.++-|..+++.+++|.+.|++|.+++++......
T Consensus 320 vv~~~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~~~~ 396 (416)
T KOG2765|consen 320 VVFNNLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSENSK 396 (416)
T ss_pred eeHhhHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheeccccccc
Confidence 78888999999999999999999999999999999999999999988999999999999999999999988665443
No 19
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.74 E-value=3.3e-15 Score=148.19 Aligned_cols=254 Identities=17% Similarity=0.180 Sum_probs=202.7
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhc---CcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986 161 DPSAFTVVRFALSAIPFIPFVLRAR---DDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG- 236 (473)
Q Consensus 161 ~p~~~~~~R~~~a~l~~~~~~~~~~---~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~- 236 (473)
.|..+++..+....++..++....+ .++..++..+..+++..++..+.+.|++|++...-.++....|+++++++.
T Consensus 31 ~~~~lt~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l 110 (303)
T PF08449_consen 31 FPLFLTFVQFAFNALFSFILLSLFKFPKSRKIPLKKYAILSFLFFLASVLSNAALKYISYPTQIVFKSSKPIPVMILGVL 110 (303)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhccccCCCcChHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHH
Confidence 3889999999988888777766554 233446667888999999999999999999999999999999999999999
Q ss_pred HhcCcCchHHHHHHHHHHHHhheeecCCC-----C------CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHH
Q 011986 237 MLGAIVPARTWFGAVMSILGVALLESSGS-----P------PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLG 305 (473)
Q Consensus 237 ~l~er~s~~~~~g~~lal~GV~li~~~~~-----~------~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~ 305 (473)
++|+|.++++++++++..+|+++....+. . ...|+++.+++.++.|...+..+|+.++. +.++....+
T Consensus 111 ~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl~~~a~~~~~qe~~~~~~-~~~~~~~mf 189 (303)
T PF08449_consen 111 ILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSLLLDAFTGVYQEKLFKKY-GKSPWELMF 189 (303)
T ss_pred hcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcHHHHHH
Confidence 89999999999999999999999875431 1 12399999999999999999999997765 456677888
Q ss_pred HHHHHHHHHHHHHHHH--hccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHH
Q 011986 306 YEVCVIALLSAVWYFI--GGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAI 382 (473)
Q Consensus 306 ~~~l~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~ 382 (473)
+..+++.++.++.... .+.... .... .+ ....+..++...+.+. +++.+.++..++.++...++
T Consensus 190 y~n~~~~~~~~~~~~~l~~~~~~~~~~f~----------~~--~p~~~~~l~~~s~~~~-~g~~~i~~~~~~~~al~~t~ 256 (303)
T PF08449_consen 190 YTNLFSLPFLLILLFLLPTGEFRSAIRFI----------SA--HPSVLLYLLLFSLTGA-LGQFFIFYLIKKFSALTTTI 256 (303)
T ss_pred HHHHHHHHHHHHHHHHHHhhHhhHHHHHH----------HH--hHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCchhhhh
Confidence 8888888887777666 222110 0000 00 0112444455555444 77777778899999999999
Q ss_pred HhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986 383 IYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 383 l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~ 428 (473)
+..+.-+++++++++++|+++++.+|+|++++++|..+....++++
T Consensus 257 v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~~~~k~ 302 (303)
T PF08449_consen 257 VTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSYAKKKK 302 (303)
T ss_pred HHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHHhhccC
Confidence 9999999999999999999999999999999999999998876553
No 20
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.69 E-value=2.2e-16 Score=154.12 Aligned_cols=268 Identities=14% Similarity=0.139 Sum_probs=213.4
Q ss_pred HHHHHHhhc--cCC-hHHHHHHHHHHHHHHHHHHHHhhcCc------ccchhHHHHHHHHHHHHHHHHHHHhhccchhHH
Q 011986 150 IPVIKEVEA--ITD-PSAFTVVRFALSAIPFIPFVLRARDD------VHTRNAGFELGLWVSLGYLMQALGLETSDAGRA 220 (473)
Q Consensus 150 ~~~~k~~~~--~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~------~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~a 220 (473)
....|.+++ +++ |..++.++.+.+.+.++.....+..+ ...++..+.+|++.+++..+-+.|+.+.+++..
T Consensus 33 ~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl~~~~~~~~v~~n~Sl~~v~VsF~ 112 (316)
T KOG1441|consen 33 IILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPLGLVFCISHVLGNVSLSYVPVSFY 112 (316)
T ss_pred EEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHHHHHHHHHHHhcchhhhccchhHH
Confidence 445588877 555 88888887777777776665544221 134667788999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhh-cCCC
Q 011986 221 SFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISR-STNK 297 (473)
Q Consensus 221 svi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~-~~~~ 297 (473)
..+..++|.+++++++ +.+|+.++..++.++....||.+....+..+ ..|...++.+.+.++..+++.+++.+ +...
T Consensus 113 q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~ 192 (316)
T KOG1441|consen 113 QTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAMISNLAFALRNILSKKLLTSKGES 192 (316)
T ss_pred HHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHHHHHHHHHHHHHHHHHhhhccccc
Confidence 9999999999999999 7899999999999999999999999877654 57999999999999999999999885 3456
Q ss_pred CCchhHHHHHHHHHHHHHH-HHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC
Q 011986 298 KDFLPLLGYEVCVIALLSA-VWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVS 376 (473)
Q Consensus 298 ~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~ 376 (473)
.|+++...++.-...+.++ |+....+.... .......|.+. ....++..++.... +..-+..+++.+
T Consensus 193 ~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~-~~~~~~~~~~~----------~~~~~~~sv~~f~~-Nls~f~~ig~tS 260 (316)
T KOG1441|consen 193 LNSMNLLYYTAPISLIFLLIPFLDYVEGNKF-VGFLTAPWFVT----------FLILLLNSVLAFLL-NLSAFLVIGRTS 260 (316)
T ss_pred cCchHHHHHhhhHHHHHHhcchHhhhcccce-eeeeccccchh----------hHHHHHHHHHHHHH-HHHHHHHHcccC
Confidence 8899999999988888888 77665544322 11111112111 23344444555533 344445999999
Q ss_pred hhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 377 ATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 377 a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
|.+.++...+.-++.++.++++|+++.++.+..|+++.++|++++...|.++.
T Consensus 261 alT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~~k~~~~ 313 (316)
T KOG1441|consen 261 ALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSRAKLKEK 313 (316)
T ss_pred chhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHHHhhhhh
Confidence 99999999999999999999999999999999999999999999998766543
No 21
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.56 E-value=4.3e-14 Score=116.77 Aligned_cols=129 Identities=21% Similarity=0.209 Sum_probs=117.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC-------cccchhHHHHHHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD-------DVHTRNAGFELGLWVSLGYL 206 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~-------~~~~~~~~ll~g~~~~~~~~ 206 (473)
...+++++++++||+..++.|...++++|..-+++|..+..++++.++...++ ..+.+....+.|+....++.
T Consensus 3 ~~~~~ALLsA~fa~L~~iF~KIGl~~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~glswl 82 (140)
T COG2510 3 AAIIYALLSALFAGLTPIFAKIGLEGVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLSWL 82 (140)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHHHH
Confidence 35789999999999999999999999999999999999999999988887653 34556666778999999999
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
+||.|++...++.+..+..++|++++++++ ++|||++..+|+|+++..+|++++..
T Consensus 83 ~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 83 LYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 999999999999999999999999999999 99999999999999999999998763
No 22
>COG2510 Predicted membrane protein [Function unknown]
Probab=99.45 E-value=7.5e-13 Score=109.51 Aligned_cols=136 Identities=20% Similarity=0.300 Sum_probs=113.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986 270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP 349 (473)
Q Consensus 270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (473)
..++++++|+++++..++.|--.+ ++||......+.++...++..+....+........++..
T Consensus 4 ~~~~ALLsA~fa~L~~iF~KIGl~---~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~-------------- 66 (140)
T COG2510 4 AIIYALLSALFAGLTPIFAKIGLE---GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKS-------------- 66 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcc---ccCccHHHHHHHHHHHHHHHHHHHhcCceecccccCcce--------------
Confidence 468999999999999999885544 456888888999998888888888777655543333332
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
|.. +.++++.++++..+|++|++..+++++.++.-++|+++++++++++||+++..+|+|+++|++|++++.+
T Consensus 67 ~lf-lilSGla~glswl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 67 WLF-LILSGLAGGLSWLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred ehh-hhHHHHHHHHHHHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 444 4455578889999999999999999999999999999999999999999999999999999999887653
No 23
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.42 E-value=4.8e-11 Score=114.49 Aligned_cols=284 Identities=12% Similarity=0.080 Sum_probs=215.1
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHH--HHHHHHHHHHHHHHHhh-----cCcccchhHHHHHHHHHHHHHH
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITD-PSAFTV--VRFALSAIPFIPFVLRA-----RDDVHTRNAGFELGLWVSLGYL 206 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~--~R~~~a~l~~~~~~~~~-----~~~~~~~~~~ll~g~~~~~~~~ 206 (473)
.+..++.-++.=-++.+..|.++...+ |..+.. .+++...+.+...-..+ .-+++..+.++...++.....+
T Consensus 13 ~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~~P~~~lf~~~i~ 92 (314)
T KOG1444|consen 13 PLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKWFPVSLLFVGMLF 92 (314)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHHccHHHHHHHHHH
Confidence 345555555555566777798876544 444444 77776655554443222 1234556677888888888888
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCCCCH-HHHHHHHHHHHHHHH
Q 011986 207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSPPSV-GDLLNFLSAVFFGIH 284 (473)
Q Consensus 207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~-G~~laL~aal~~a~~ 284 (473)
.-..+++|.++...+++....|+++++... ++|.|+++..|.++....+|......++..++. |+.+++...+.-+.+
T Consensus 93 t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~w~~~n~~~~a~~ 172 (314)
T KOG1444|consen 93 TGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYSWALANCLTTAAF 172 (314)
T ss_pred HccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHHHHHHHHHHHHHH
Confidence 888999999999999999999999999999 899999999999999999999998888776655 899999999999999
Q ss_pred HHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHH
Q 011986 285 MLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLC 364 (473)
Q Consensus 285 ~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~ 364 (473)
.+..|+-.+.. +.+-..+..|..++..+.+.....+.+....... ..+. |.....|..++.-++++.++.
T Consensus 173 ~v~~kk~vd~~-~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~-~~~~--------~~~~~~~~~~~lScv~gf~is 242 (314)
T KOG1444|consen 173 VVYVKKSVDSA-NLNKFGLVFYNNLLSLPPLLILSFITGELDALSL-NFDN--------WSDSSVLVVMLLSCVMGFGIS 242 (314)
T ss_pred HHHHHHhhccc-cccceeEEeehhHHHHHHHHHHHHHhcchHHHHh-hccc--------ccchhHHHHHHHHHHHHHHHH
Confidence 99999775543 3455667788888888888887777665331111 1100 112224677788888888888
Q ss_pred HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
|..+. ..+..++.+.++.....-..+.+.+.+++|++.++...+|..+=++|.++++..+.+++
T Consensus 243 y~s~~-ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~~~~~~k 306 (314)
T KOG1444|consen 243 YTSFL-CTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSYATFRKK 306 (314)
T ss_pred HHHHH-HHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhhhhhhhc
Confidence 77764 88999999999999778888888888888899999999999999999999988765443
No 24
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.41 E-value=5.4e-10 Score=108.89 Aligned_cols=276 Identities=12% Similarity=0.101 Sum_probs=190.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhc-c---CChHHHHHHHHHHHHHHHHHHHHhhcCc-----cc--------ch---hH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEA-I---TDPSAFTVVRFALSAIPFIPFVLRARDD-----VH--------TR---NA 193 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~-~---~~p~~~~~~R~~~a~l~~~~~~~~~~~~-----~~--------~~---~~ 193 (473)
..++.++...+.++......|+... + +-|...++.-=.+-.+++..++++..+. .+ .+ ..
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 3466777778888888889888732 2 5577777777666777776666655211 11 01 11
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC---------
Q 011986 194 GFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS--------- 263 (473)
Q Consensus 194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~--------- 263 (473)
...-+++..+.+.++|.++.+.+++...+.+.+-.+.|+++.. +|++|++++||.++++.++|+.++-.+
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 1223566777778999999999999999999999999999999 899999999999999999999987621
Q ss_pred ---CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhh
Q 011986 264 ---GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTM 340 (473)
Q Consensus 264 ---~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 340 (473)
+..+..|....+.+++.-++..+..+|+.|+.. .+.....--..+++.++.....+..+........-...|.
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~-~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s--- 250 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSN-VSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYS--- 250 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHHHHHHHHHhhccccccccCCcccccc---
Confidence 123457999999999999999999999987644 2222222222333333333333333322221011111111
Q ss_pred hhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986 341 FWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT 420 (473)
Q Consensus 341 ~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l 420 (473)
...|..++..++-+- +-..-+++.+-..=+....+..+++.+.++.+++-.++....+|+.+++.++.+
T Consensus 251 ------~~vw~vVl~~a~gGL-----lvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~l 319 (345)
T KOG2234|consen 251 ------SIVWLVVLLNAVGGL-----LVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFL 319 (345)
T ss_pred ------HHHHHHHHHHhccch-----hHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHH
Confidence 113444444444333 333456777777777778888999999999999999999999999999999999
Q ss_pred Hhhc
Q 011986 421 VQIF 424 (473)
Q Consensus 421 ~~~~ 424 (473)
+...
T Consensus 320 Y~~~ 323 (345)
T KOG2234|consen 320 YSLY 323 (345)
T ss_pred hhcC
Confidence 8843
No 25
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.40 E-value=9.4e-11 Score=109.51 Aligned_cols=282 Identities=17% Similarity=0.154 Sum_probs=197.2
Q ss_pred HHHHHHHHHhhHHHHHHHhh----ccCC----hHHHHHHHHHHHHHHHHHHHHhhcCc-----------------ccchh
Q 011986 138 LLNAITVVYASNIPVIKEVE----AITD----PSAFTVVRFALSAIPFIPFVLRARDD-----------------VHTRN 192 (473)
Q Consensus 138 l~l~a~~~wg~~~~~~k~~~----~~~~----p~~~~~~R~~~a~l~~~~~~~~~~~~-----------------~~~~~ 192 (473)
+.++....-+.+-+..|++. ++-| |+.....-++-=++++..+.+.+.+. .+.+.
T Consensus 7 ls~imvvsGs~Ntl~aKwadsi~~eg~pgfqhpvlqal~mFlGEflCl~vf~lir~~sn~~g~~s~~~~ilsq~~~pf~p 86 (372)
T KOG3912|consen 7 LSLIMVVSGSFNTLVAKWADSIQAEGSPGFQHPVLQALLMFLGEFLCLAVFKLIRLRSNGQGVSSDLDSILSQDSSPFNP 86 (372)
T ss_pred hhhhhhhhccHHHHHHHHHHhhhhhCCCccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCcccccccccccccCCCCc
Confidence 33444444456677788873 2322 54444444444445555555444210 01111
Q ss_pred -HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC------
Q 011986 193 -AGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG------ 264 (473)
Q Consensus 193 -~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~------ 264 (473)
..+.-+++-..+..++|.++.+++++.-.++....-+|+.+++. +|+++++.++|+|+....+|++.+...+
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 22334777788889999999999999999999999999999999 9999999999999999999999876532
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCC-CCCCCCC---
Q 011986 265 -----SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGT-QGSDPSS--- 335 (473)
Q Consensus 265 -----~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~~~--- 335 (473)
+....|+++.+.+-+.-|+.+++-+|..++. .++|+...+|+.+++.++...+.+.....+.. .+.....
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~-nV~pl~avg~eGlfG~v~~slL~i~m~yi~~~~sfS~~~~g~~ 245 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKS-NVAPLQAVGWEGLFGLVILSLLAIPMYYIPSGDSFSCNPRGVL 245 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhc-cCCHHHHhhhhhhHHHHHHHHHHHHHhheecCCcCcCCCCcch
Confidence 2345799999999999999999999987765 58899999999999876665555443332222 1111111
Q ss_pred cchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH----HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHH
Q 011986 336 WTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMA----AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGA 411 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~----al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~ 411 (473)
..|...|...+.. ..++++..++.+.-.++|. --+..++++-.++..+...+..+++..+..|.+...|+.|.
T Consensus 246 eD~~~~~~~~~e~---p~l~val~~~~vSiAffNfaGlsitk~~SattRmllD~lRt~~IWv~si~m~~E~f~llqilGF 322 (372)
T KOG3912|consen 246 EDWGDAFAALQES---PSLAVALIGFTVSIAFFNFAGLSITKELSATTRMLLDSLRTYVIWVFSIAMGWEYFHLLQILGF 322 (372)
T ss_pred hhHHHHHHHhcCC---chhHHHHhhhhhheeeeeehhhHHHHHhhHHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHH
Confidence 1222222222222 2344444455455555553 35667889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhh
Q 011986 412 ALVLVGSLTVQI 423 (473)
Q Consensus 412 ~lIl~g~~l~~~ 423 (473)
++.+.|++++.-
T Consensus 323 liLi~Gi~lY~~ 334 (372)
T KOG3912|consen 323 LILIMGIILYNQ 334 (372)
T ss_pred HHHHHHHHHHHH
Confidence 999999988653
No 26
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.40 E-value=6.9e-11 Score=111.92 Aligned_cols=258 Identities=13% Similarity=0.023 Sum_probs=186.1
Q ss_pred cCC-hHHHHHHHHHHHHHHHHHHHHhhcC---c---ccc----hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Q 011986 159 ITD-PSAFTVVRFALSAIPFIPFVLRARD---D---VHT----RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFT 227 (473)
Q Consensus 159 ~~~-p~~~~~~R~~~a~l~~~~~~~~~~~---~---~~~----~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~ 227 (473)
.++ |..++...+++-+++........+. + .-. .++....|+..+....+-+++++|++++.-++.....
T Consensus 41 ~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata~DIGLSN~sl~yVtlSlYTM~KSSs 120 (349)
T KOG1443|consen 41 NFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATALDIGLSNWSLEYVTLSLYTMTKSSS 120 (349)
T ss_pred CcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhhcccccccceeeeeeeeeeeeccccH
Confidence 455 8888888888777776655543321 1 112 2344467777777788999999999999999999999
Q ss_pred HHHHHHHHHHhc-CcCchHHHHHHHHHHHHhheeecCCCCC-CHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCchhH
Q 011986 228 VIVVPLLDGMLG-AIVPARTWFGAVMSILGVALLESSGSPP-SVGDLLNFLSAVFFGIHMLRTEHISRSTN--KKDFLPL 303 (473)
Q Consensus 228 Pl~~~ll~~~l~-er~s~~~~~g~~lal~GV~li~~~~~~~-~~G~~laL~aal~~a~~~i~~k~~~~~~~--~~~~~~~ 303 (473)
++|+.+++.++| ||+++.-.+-+++..+|+++.......+ ..|..+.+++.++-++.....+++.++.+ .-+|+..
T Consensus 121 i~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~t 200 (349)
T KOG1443|consen 121 ILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDT 200 (349)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeee
Confidence 999999999776 9999999999999999999998865544 57999999999999999888888877654 2356667
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHH
Q 011986 304 LGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAII 383 (473)
Q Consensus 304 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l 383 (473)
.....-...+.++|..+.+++......... +...+... -......+...|.+++......+ .-+.+.+..+.++.
T Consensus 201 i~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~--f~~~d~~~--~~rv~g~i~l~g~laF~l~~sEf-lLl~~Ts~ltlSIa 275 (349)
T KOG1443|consen 201 IFHLQPWMSIGLLPLSLLFEGLHLITSSSI--FRFQDTGL--ILRVIGLISLGGLLAFLLEFSEF-LLLSRTSSLTLSIA 275 (349)
T ss_pred HHHhhhHHHHHHHHHHHHHcccccchhhhH--HHhcCccH--HHHHHHHHHHHHHHHHHHHHHHH-heeeeccceeeeHH
Confidence 777667777777777776665433211110 00000000 00012222223333333333333 36788888899999
Q ss_pred hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986 384 YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV 421 (473)
Q Consensus 384 ~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~ 421 (473)
.-..-+.+.+++.++.++.++...|.|.++.+.|+.+.
T Consensus 276 GI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 276 GIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999998877
No 27
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.38 E-value=7.6e-11 Score=112.70 Aligned_cols=208 Identities=16% Similarity=0.149 Sum_probs=151.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC-----
Q 011986 192 NAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS----- 265 (473)
Q Consensus 192 ~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~----- 265 (473)
.+..+-+++..+.+.+.|+++++++++.-.++..+-.++++++++ +||+|++++||+++++.++|++++-.++.
T Consensus 18 ~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~~~~ 97 (244)
T PF04142_consen 18 LKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQSSDN 97 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcccccc
Confidence 344455788999999999999999999999999999999999999 89999999999999999999999764311
Q ss_pred -------------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCC
Q 011986 266 -------------PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSD 332 (473)
Q Consensus 266 -------------~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
....|.++.++++++-++..+..+|+.|+.+ .+.........+.+.++.++.....+........-
T Consensus 98 ~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~-~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~ 176 (244)
T PF04142_consen 98 SSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSN-VSLWIQNMQLYLFGILFNLLALLLSDGSAISESGF 176 (244)
T ss_pred ccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccc-hhHHHHHHHHHHHHHHHHHHHHhcccccccccCCc
Confidence 1247899999999999999999999988754 44343333334444444444433332211111111
Q ss_pred CCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHH
Q 011986 333 PSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAA 412 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~ 412 (473)
... |+ ...|..++ ...++=++....+|+.+...=+....++.+++.+.++++||.+++....+|++
T Consensus 177 f~G------~~---~~~~~~i~-----~~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 177 FHG------YS---WWVWIVIF-----LQAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred hhh------cc---hHHHHHHH-----HHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 111 11 01233333 33333344455789999999999999999999999999999999999999987
Q ss_pred HH
Q 011986 413 LV 414 (473)
Q Consensus 413 lI 414 (473)
++
T Consensus 243 ~V 244 (244)
T PF04142_consen 243 LV 244 (244)
T ss_pred cC
Confidence 64
No 28
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=99.37 E-value=2.4e-13 Score=125.09 Aligned_cols=269 Identities=17% Similarity=0.190 Sum_probs=197.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhc-cC-ChHHHHHHHHHHHHHHHHHHHHhhcCccc-chhHHHHHHHHHHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEA-IT-DPSAFTVVRFALSAIPFIPFVLRARDDVH-TRNAGFELGLWVSLGYLMQAL 210 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~-~~-~p~~~~~~R~~~a~l~~~~~~~~~~~~~~-~~~~~ll~g~~~~~~~~l~~~ 210 (473)
.|+.+.-.-.++-.........+.+ ++ .|..-.|..+..-+++..+++.+|++..+ .|+..+++++.-.-++++...
T Consensus 18 i~~~LGQiLSL~~t~~a~tss~la~k~iN~Pt~QtFl~Y~LLalVY~~~~~fR~~~~~~~~~hYilla~~DVEaNy~vV~ 97 (336)
T KOG2766|consen 18 IGLGLGQILSLLITSTAFTSSELARKGINAPTSQTFLNYVLLALVYGPIMLFRRKYIKAKWRHYILLAFVDVEANYFVVK 97 (336)
T ss_pred heeeHHHHHHHHHHcchhhhHHHHhccCCCccHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHhhheeEEeecccEEEee
Confidence 3444444444444444444444433 23 48888999999888888888888875443 345567777777777888899
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC---------CCCCCHHHHHHHHHHHH
Q 011986 211 GLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS---------GSPPSVGDLLNFLSAVF 280 (473)
Q Consensus 211 al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~---------~~~~~~G~~laL~aal~ 280 (473)
|.||++...+.++-.-....+.+++| ++|.|..+.++.|++++++||+++... ++++..|+.+.+++|-+
T Consensus 98 AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~agd~aggsnp~~GD~lvi~GATl 177 (336)
T KOG2766|consen 98 AYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAGDRAGGSNPVKGDFLVIAGATL 177 (336)
T ss_pred ehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccccccCCCCCccCcEEEEeccee
Confidence 99999999999998877778888899 899999999999999999999998753 34667999999999999
Q ss_pred HHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHH-HH
Q 011986 281 FGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTG-IF 359 (473)
Q Consensus 281 ~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg-~~ 359 (473)
||..++.-+.+.|+.+ .....+...++++++..+-.+.... +. ....|. |....+++ .+
T Consensus 178 YaVSNv~EEflvkn~d---~~elm~~lgLfGaIIsaIQ~i~~~~-~~----~tl~w~------------~~i~~yl~f~L 237 (336)
T KOG2766|consen 178 YAVSNVSEEFLVKNAD---RVELMGFLGLFGAIISAIQFIFERH-HV----STLHWD------------SAIFLYLRFAL 237 (336)
T ss_pred eeeccccHHHHHhcCc---HHHHHHHHHHHHHHHHHHHHhhhcc-ce----eeEeeh------------HHHHHHHHHHH
Confidence 9999999999988766 5556677778888887776333221 11 111121 22233333 33
Q ss_pred HHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 360 STGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 360 ~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
...+-|.+.-.-+|..+++..++-..++-.+++++ ..||-...|...+..+.+..|.+++..+
T Consensus 238 ~MFllYsl~pil~k~~~aT~~nlslLTsDmwsl~i--~~FgYhv~wLY~laF~~i~~GliiYs~r 300 (336)
T KOG2766|consen 238 TMFLLYSLAPILIKTNSATMFNLSLLTSDMWSLLI--RTFGYHVDWLYFLAFATIATGLIIYSTR 300 (336)
T ss_pred HHHHHHHhhHHheecCCceEEEhhHhHHHHHHHHH--HHHhcchhhhhHHHHHHHHHhhEEeecc
Confidence 34344555556788889999999899999999988 5678779999999999999998887543
No 29
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.31 E-value=1.5e-11 Score=104.66 Aligned_cols=125 Identities=20% Similarity=0.357 Sum_probs=102.8
Q ss_pred HHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986 279 VFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI 358 (473)
Q Consensus 279 l~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~ 358 (473)
++||.+.+..|+..++ .++.....++...+++ ..+........+ .... +...+...++.++
T Consensus 1 ~~~a~~~~~~k~~~~~---~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~--------------~~~~~~~~~~~~~ 61 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKK---ISPLSITFWRFLIAGI-LLILLLILGRKP-FKNL--------------SPRQWLWLLFLGL 61 (126)
T ss_pred ceeeeHHHHHHHHhcc---CCHHHHHHHHHHHHHH-HHHHHHhhcccc-ccCC--------------ChhhhhhhhHhhc
Confidence 4688999999988876 4588899999888887 555555544322 1111 1123667888899
Q ss_pred HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
+++++++.++++++++.+++.++.+.+++|+++.++++++++|++++.+++|++++++|+++..
T Consensus 62 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 62 LGTALAYLLYFYALKYISASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred cceehHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 9888999999999999999999999999999999999999999999999999999999998764
No 30
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.29 E-value=2e-11 Score=103.93 Aligned_cols=117 Identities=22% Similarity=0.298 Sum_probs=97.6
Q ss_pred HHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC------cccchhHHHHHHHH-HHHHHHHHHHHhhccc
Q 011986 144 VVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD------DVHTRNAGFELGLW-VSLGYLMQALGLETSD 216 (473)
Q Consensus 144 ~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~------~~~~~~~~ll~g~~-~~~~~~l~~~al~~~~ 216 (473)
++||...++.|...++++|.+++++|+..+.+ ++++....++ +.+.+...+..+.+ ..+++.++++++++.+
T Consensus 1 ~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 79 (126)
T PF00892_consen 1 FSWAIYSVFSKKLLKKISPLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYIS 79 (126)
T ss_pred ceeeeHHHHHHHHhccCCHHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcc
Confidence 47999999999999999999999999999997 4444433322 12223344555666 5888999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986 217 AGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 217 ~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~ 261 (473)
++.++++.++.|+++.++++ ++||++++.+++|+++++.|++++.
T Consensus 80 ~~~~~~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 80 ASIVSILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999 8899999999999999999998764
No 31
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.26 E-value=5.2e-11 Score=108.50 Aligned_cols=254 Identities=15% Similarity=0.129 Sum_probs=183.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCccc--c-hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-H
Q 011986 162 PSAFTVVRFALSAIPFIPFVLRARDDVH--T-RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-M 237 (473)
Q Consensus 162 p~~~~~~R~~~a~l~~~~~~~~~~~~~~--~-~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~ 237 (473)
...++|+....-.++.=+++..+++... . -+.....++....++..-+.|++++|--...+-...-|+=+++++. +
T Consensus 53 alaLVf~qC~~N~vfAkvl~~ir~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilGVl~ 132 (337)
T KOG1580|consen 53 ALALVFFQCTANTVFAKVLFLIRKKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILGVLF 132 (337)
T ss_pred HHHHHHHHHHHHHHHHHhheeecccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeeehhh
Confidence 4556666666666665444433332211 1 2223445555677778889999999999999999999999999999 7
Q ss_pred hcCcCchHHHHHHHHHHHHhheeecC--------CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHH
Q 011986 238 LGAIVPARTWFGAVMSILGVALLESS--------GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVC 309 (473)
Q Consensus 238 l~er~s~~~~~g~~lal~GV~li~~~--------~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l 309 (473)
.++..+|++...++.+++||++.... +..+..|.++.+++-..-++...+..++.....+. ...++.+..+
T Consensus 133 ~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~-g~~MM~~~Nl 211 (337)
T KOG1580|consen 133 AHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRT-GTSMMFYTNL 211 (337)
T ss_pred hcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccC-chhhHHHHHH
Confidence 89999999999999999999997753 34578999999998888888888887776543322 3345556666
Q ss_pred HHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHH
Q 011986 310 VIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEP 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~p 388 (473)
-+++.+...+++.+.... ..+..-.. ..|.-+..+|+.+. ++|++.++-+...+|...+++..+.-
T Consensus 212 wStL~Lg~g~lfTGElweF~yF~~RhP------------~~~~~l~l~ai~s~-LGQ~fIF~tv~~FgPLtCSivTTTRK 278 (337)
T KOG1580|consen 212 WSTLYLGAGLLFTGELWEFFYFVQRHP------------YVFWDLTLLAIASC-LGQWFIFKTVEEFGPLTCSIVTTTRK 278 (337)
T ss_pred HHHHHhhhhheehhhHHHHHHHHHhcc------------HHHHHHHHHHHHHH-hhhHHHHHHHHHhCCeeEEEEeehHH
Confidence 666665555444432111 10000000 01333555666555 88999889999999999999999999
Q ss_pred HHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 389 VWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 389 v~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
.|+++.++++|+.+++.+||+|.+++..|...=...+++.+
T Consensus 279 fFTil~SVllf~npls~rQwlgtvlVF~aL~~D~~~GK~a~ 319 (337)
T KOG1580|consen 279 FFTILISVLLFNNPLSGRQWLGTVLVFSALTADVVDGKKAP 319 (337)
T ss_pred HHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhhHhhcCCcCc
Confidence 99999999999999999999999999999877666555443
No 32
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.19 E-value=3.5e-09 Score=100.59 Aligned_cols=253 Identities=12% Similarity=0.099 Sum_probs=194.6
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcC---cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986 161 DPSAFTVVRFALSAIPFIPFVLRARD---DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG- 236 (473)
Q Consensus 161 ~p~~~~~~R~~~a~l~~~~~~~~~~~---~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~- 236 (473)
++..+.+..-+.+.++-..++.+++. ....++.....++...++-.+.|.|++|++--...+-...--+-+++++.
T Consensus 50 ~~~fL~~~q~l~~~~~s~~~l~~~k~~~~~~apl~~y~~is~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~L 129 (327)
T KOG1581|consen 50 HSLFLVFCQRLVALLVSYAMLKWWKKELSGVAPLYKYSLISFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTL 129 (327)
T ss_pred ccHHHHHHHHHHHHHHHHHHHhcccccCCCCCchhHHhHHHHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHH
Confidence 47777888888887777666654432 23456667788888999999999999999988888887777777778888
Q ss_pred HhcCcCchHHHHHHHHHHHHhheeecC---C-------CCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHH
Q 011986 237 MLGAIVPARTWFGAVMSILGVALLESS---G-------SPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGY 306 (473)
Q Consensus 237 ~l~er~s~~~~~g~~lal~GV~li~~~---~-------~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~ 306 (473)
+.|.|++..+.+...+.-+||.+.... + .+..+|+.+....-++=++-+....++-+ ..+++...++.+
T Consensus 130 vy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~ns~~G~~Ll~~~L~fDgfTn~tQd~lf~-~~k~s~~~mM~~ 208 (327)
T KOG1581|consen 130 VYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGRENSPIGILLLFGYLLFDGFTNATQDSLFK-KYKVSSLHMMFG 208 (327)
T ss_pred HhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCCchHhHHHHHHHHHHHhhHHhHHHHHhc-cCCccHhHHHHH
Confidence 789999999999999999999876532 1 12357888888888888888888888766 456788888888
Q ss_pred HHHHHHHHHHHHHHHhccCCC-CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhh
Q 011986 307 EVCVIALLSAVWYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYG 385 (473)
Q Consensus 307 ~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~ 385 (473)
..+..++......+..+.... ..+...+ ...+.=++....++. ++|.+-++-+++-++...+.++.
T Consensus 209 vNLf~~i~~~~~li~qg~~~~av~F~~~h------------p~~~~Di~l~s~~ga-vGQ~FI~~TI~~FGslt~t~I~t 275 (327)
T KOG1581|consen 209 VNLFSAILNGTYLILQGHLLPAVSFIKEH------------PDVAFDILLYSTCGA-VGQLFIFYTIERFGSLTFTTIMT 275 (327)
T ss_pred HHHHHHHHHHHhhhcCCCCchHHHHHHcC------------hhHHHHHHHHHHhhh-hhhheehhhHhhcccHHHHHHHH
Confidence 888888887777444332211 1111111 012334566666666 88888888999999999999999
Q ss_pred hHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 386 LEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 386 l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
+.=+++++++.+.+|++++..||+|..++..|+.+-.+.+++
T Consensus 276 tRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l~~~~k~~ 317 (327)
T KOG1581|consen 276 TRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFLEILLKKK 317 (327)
T ss_pred HHHHHHHHHHHHHhCCccchhhccCeeeehHHHHHHHHHHHh
Confidence 999999999999999999999999999999999887776655
No 33
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=99.12 E-value=7.4e-10 Score=93.32 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=81.5
Q ss_pred HHHHHHHHHHHHHHHHhhcCc--------ccchhHHHHHHHHHH-HHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-
Q 011986 167 VVRFALSAIPFIPFVLRARDD--------VHTRNAGFELGLWVS-LGYLMQALGLETSDAGRASFISMFTVIVVPLLDG- 236 (473)
Q Consensus 167 ~~R~~~a~l~~~~~~~~~~~~--------~~~~~~~ll~g~~~~-~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~- 236 (473)
.+|+.++.+++..+...+++. .+.+.+.+..|+++. .++.++++|+++.+ +.++++.+++|+++.++++
T Consensus 2 a~r~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~ 80 (113)
T PF13536_consen 2 AFRYLFSVLFLLIILLIRGRLRDLFRALRRKPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWL 80 (113)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHH
Confidence 579999999888877765432 122344455577765 88999999999999 5999999999999999999
Q ss_pred HhcCcCchHHHHHHHHHHHHhheeecCCC
Q 011986 237 MLGAIVPARTWFGAVMSILGVALLESSGS 265 (473)
Q Consensus 237 ~l~er~s~~~~~g~~lal~GV~li~~~~~ 265 (473)
++|||++++++++++++++|++++..++.
T Consensus 81 ~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 81 FFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred HhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 89999999999999999999999987653
No 34
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.05 E-value=6.5e-09 Score=100.53 Aligned_cols=127 Identities=23% Similarity=0.304 Sum_probs=104.2
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChH--HHHHHHHHHHHHHHHHHHHhhcCccc----chhHHHHHHHH-HHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPS--AFTVVRFALSAIPFIPFVLRARDDVH----TRNAGFELGLW-VSLG 204 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~--~~~~~R~~~a~l~~~~~~~~~~~~~~----~~~~~ll~g~~-~~~~ 204 (473)
...|.+++++++++|+...+..|...++.++. .+..+++.++.+++.++.+..++... .+...+..+++ ..++
T Consensus 126 ~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 126 NPAGLLLGLGSGISFALGTVLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLGPNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHHHHHH
Confidence 45799999999999999999999987777754 45557789998888888766543222 12223445555 4678
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhh
Q 011986 205 YLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVA 258 (473)
Q Consensus 205 ~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~ 258 (473)
+.++++++++.+++.++++.++.|+++.++++ ++||+++..+++|+++.+.|+.
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~~ 260 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAVL 260 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999 8999999999999999999974
No 35
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=99.03 E-value=5.1e-09 Score=92.85 Aligned_cols=147 Identities=14% Similarity=0.104 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcC----CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986 270 GDLLNFLSAVFFGIHMLRTEHISRST----NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM 345 (473)
Q Consensus 270 G~~laL~aal~~a~~~i~~k~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
|.++++++.++.+++.++.|++.++. ...++..+..+....+.+++.+.....+............. -+..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~-----~~~~ 75 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFG-----EELS 75 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhh-----hhhc
Confidence 67899999999999999999988874 67889999999999999999998887765442221110000 0000
Q ss_pred -chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 346 -VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 346 -~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
....+..++..|+++. +-....+..+++.+|...++...+..++..+++++++||++++.+++|+++.++|.++++
T Consensus 76 ~~~~~~~~~~~~~~~~~-~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 76 SDPNFIFLLILSGLLAF-LYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred chHHHHHHHHHHHHHHH-HHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 1123555566666666 555556669999999999999999999999999999999999999999999999998765
No 36
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.03 E-value=1.4e-08 Score=92.16 Aligned_cols=266 Identities=11% Similarity=0.070 Sum_probs=188.9
Q ss_pred HHHHHHhhcc--CC-hHHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011986 150 IPVIKEVEAI--TD-PSAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFIS 224 (473)
Q Consensus 150 ~~~~k~~~~~--~~-p~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~ 224 (473)
-+..|++++. +. -+.+++++.+...+.++.+-+.+ +.+....+.++...++.....+.--.+++|.++..-++..
T Consensus 22 TltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR~t~aK~WfpiSfLLv~MIyt~SKsLqyL~vpiYTiFK 101 (309)
T COG5070 22 TLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFRLTKAKKWFPISFLLVVMIYTSSKSLQYLAVPIYTIFK 101 (309)
T ss_pred HHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhheehhhhhhhcCHHHHHHHHHHhcccceeeeeeeHHHHhc
Confidence 3445666542 22 44555566555444444333222 1223334455666777777767777899999999999999
Q ss_pred HHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCC--------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986 225 MFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGS--------PPSVGDLLNFLSAVFFGIHMLRTEHISRST 295 (473)
Q Consensus 225 ~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~--------~~~~G~~laL~aal~~a~~~i~~k~~~~~~ 295 (473)
++..+.++.... ++|.|++..+....++.++.-+...++|. ..+.|+++.....+.-+.|.+..|+-.+-.
T Consensus 102 NltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN~GY~Wm~~NclssaafVL~mrkri~lt 181 (309)
T COG5070 102 NLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILNPGYLWMFTNCLSSAAFVLIMRKRIKLT 181 (309)
T ss_pred cceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccCCceEEEehhhHhHHHHHHHHHHhhccc
Confidence 999999999998 89999999999999888888777777664 578899999999999999998888654433
Q ss_pred CCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhccc
Q 011986 296 NKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDV 375 (473)
Q Consensus 296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~ 375 (473)
+.-+ .-.++|..+++..+++.+.++.+++....... .+......++...|+.+.+..| +-.+.++..
T Consensus 182 Nf~d-~dtmfYnNllslPiL~~~s~~~edws~~n~an-----------nl~~d~l~am~ISgl~svgiSy-~saWcvrVt 248 (309)
T COG5070 182 NFKD-FDTMFYNNLLSLPILLSFSFLFEDWSPGNLAN-----------NLSVDSLMAMFISGLCSVGISY-CSAWCVRVT 248 (309)
T ss_pred ccch-hhHHHHhhhHHHHHHHHHHHHhccCCcchhhc-----------CCChHHHHHHHHHHHHHhhhhh-ccceeEeeh
Confidence 3223 33566777777777777776666543221111 1122234455666666665544 455789999
Q ss_pred ChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986 376 SATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 376 ~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~ 428 (473)
+.+..+++..++-.-..+-|.++|+|+.+...+....+=.++.+++...+.++
T Consensus 249 SSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~iYavaks~k 301 (309)
T COG5070 249 SSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAIYAVAKSKK 301 (309)
T ss_pred hhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998888777777777665443
No 37
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=99.01 E-value=8.6e-08 Score=91.70 Aligned_cols=235 Identities=14% Similarity=0.114 Sum_probs=162.0
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCcc----cchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHH
Q 011986 161 DPSAFTVVRFALSAIPFIPFVLRARDDV----HTRNAGFELGLWVSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLD 235 (473)
Q Consensus 161 ~p~~~~~~R~~~a~l~~~~~~~~~~~~~----~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~ 235 (473)
+|.+-.+.-..-+.++.+......+... ..+...++.|++..+++...+.|+++..++.+..+. .+.-+.+.+++
T Consensus 11 ~~~~Q~lG~t~Gali~alv~~~~~~p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~g 90 (269)
T PF06800_consen 11 KPANQILGTTIGALIFALVVFLFRQPAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIG 90 (269)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHH
Confidence 3555444444444444444444454433 345566778999999999999999999999999996 56666788888
Q ss_pred H-HhcCcCchHHH----HHHHHHHHHhheeecCCC---------CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCch
Q 011986 236 G-MLGAIVPARTW----FGAVMSILGVALLESSGS---------PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFL 301 (473)
Q Consensus 236 ~-~l~er~s~~~~----~g~~lal~GV~li~~~~~---------~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~ 301 (473)
. +|+|.-+..++ +|+++.++|+++-...+. ....|....+++.+.|..|.++.|.. .+++.
T Consensus 91 v~~fgEW~~~~~~~~G~~Al~liiiGv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~-----~~~~~ 165 (269)
T PF06800_consen 91 VLFFGEWTTTTQKIIGFLALVLIIIGVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF-----HVSGW 165 (269)
T ss_pred HhhcCCCCCcchHHHHHHHHHHHHHHHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc-----CCChh
Confidence 8 89998876543 478888899998775421 23468999999999999999986643 23444
Q ss_pred hHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHH
Q 011986 302 PLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETA 381 (473)
Q Consensus 302 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s 381 (473)
....-+.+...+....+..... ... ..... | .-.++++...++..++..+.++.+.+..=
T Consensus 166 ~~~lPqaiGm~i~a~i~~~~~~---~~~-~~k~~--------------~--~nil~G~~w~ignl~~~is~~~~G~a~af 225 (269)
T PF06800_consen 166 SAFLPQAIGMLIGAFIFNLFSK---KPF-FEKKS--------------W--KNILTGLIWGIGNLFYLISAQKNGVATAF 225 (269)
T ss_pred HhHHHHHHHHHHHHHHHhhccc---ccc-cccch--------------H--HhhHHHHHHHHHHHHHHHhHHhccchhhh
Confidence 4444443333333333322221 000 01111 1 22344455558888888999999999999
Q ss_pred HHhhhHHHHHHHHHHHHhcCcccHhh----HHHHHHHHHHHHH
Q 011986 382 IIYGLEPVWGAGFAWFILGERWGATG----WLGAALVLVGSLT 420 (473)
Q Consensus 382 ~l~~l~pv~a~l~~~il~gE~~~~~~----~~G~~lIl~g~~l 420 (473)
.+.-+.++++.+.+.+++||.=+..+ ++|.++|++|.++
T Consensus 226 ~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 226 TLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred hHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 99999999999999999999887654 4688888888654
No 38
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.98 E-value=1.7e-08 Score=99.04 Aligned_cols=134 Identities=15% Similarity=0.089 Sum_probs=100.1
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986 271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW 350 (473)
Q Consensus 271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
.++.++++++++...+..|+..++.+ + ...+.....+++..|+........... ... ..+
T Consensus 3 ~~~~~~aa~~~a~~~~~~k~~~~~~~---~--~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~-------------~~~ 62 (281)
T TIGR03340 3 LTLVVFSALMHAGWNLMAKSHADKEP---D--FLWWALLAHSVLLTPYGLWYLAQVGWS--RLP-------------ATF 62 (281)
T ss_pred HHHHHHHHHHHHHHHHHHhhcCCchh---H--HHHHHHHHHHHHHHHHHHHhcccCCCC--Ccc-------------hhh
Confidence 47889999999999999997776533 2 234444555566666554421111111 000 013
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
...+..+++.....+.++++++++.+++.++++.+++|+++.+++++++||+++..+|+|++++++|+++....
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~ 136 (281)
T TIGR03340 63 WLLLAISAVANMVYFLGLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLS 136 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34555666677788999999999999999999999999999999999999999999999999999999887643
No 39
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=2e-10 Score=107.06 Aligned_cols=264 Identities=16% Similarity=0.127 Sum_probs=198.2
Q ss_pred HHHHhhcc----C-ChHHHHHHHHHHHHHHHHHHHHhhcC------------cccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986 152 VIKEVEAI----T-DPSAFTVVRFALSAIPFIPFVLRARD------------DVHTRNAGFELGLWVSLGYLMQALGLET 214 (473)
Q Consensus 152 ~~k~~~~~----~-~p~~~~~~R~~~a~l~~~~~~~~~~~------------~~~~~~~~ll~g~~~~~~~~l~~~al~~ 214 (473)
..|++++. + .|..+++...++...++..+-...++ +.+.-+..+.+.+....+..+-+++++|
T Consensus 46 ~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsvVfi~mI~fnnlcL~y 125 (347)
T KOG1442|consen 46 LNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSVVFILMISFNNLCLKY 125 (347)
T ss_pred hHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhheeeeehhccceehhh
Confidence 44666543 2 48899999999888887776543321 1112233344555556666778899999
Q ss_pred cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC----CCCCCHHHHHHHHHHHHHHHHHHHHh
Q 011986 215 SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS----GSPPSVGDLLNFLSAVFFGIHMLRTE 289 (473)
Q Consensus 215 ~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~----~~~~~~G~~laL~aal~~a~~~i~~k 289 (473)
++++.-.+-..+.-+|++++.+ ++|+|-+..-..++++.++|-.+=.-. +.....|.++++.+.++-|+..+..|
T Consensus 126 VgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifGVlaSl~vAlnaiytk 205 (347)
T KOG1442|consen 126 VGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFGVLASLAVALNAIYTK 205 (347)
T ss_pred cceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999 899999999888888888887664332 22346899999999999999999999
Q ss_pred hhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHH
Q 011986 290 HISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEM 369 (473)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~ 369 (473)
|......+ -...+.+|..+...++.+|.+++.+..+.....+ ..+. ...|+.+..-|++++.++|.-.
T Consensus 206 k~l~~v~~-~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~-~l~a---------~~Fw~~mtLsglfgF~mgyvTg- 273 (347)
T KOG1442|consen 206 KVLPPVGD-CIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP-HLPA---------IKFWILMTLSGLFGFAMGYVTG- 273 (347)
T ss_pred eecccccC-eehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc-cchH---------HHHHHHHHHHHHHHHHhhheee-
Confidence 66544332 2455778888888888899888877654432211 1111 2248888888888887776533
Q ss_pred HHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 370 AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 370 ~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
+=+|-.+|.+..+-....-....+++..+++|.-+..-|-|-++|++|...+.+.|+.
T Consensus 274 ~QIK~TSplThnISgTAka~aQTvlAv~~y~E~ks~lwwtsn~~vLvgs~~YT~vk~~ 331 (347)
T KOG1442|consen 274 WQIKVTSPLTHNISGTAKAAAQTVLAVAYYSETKSGLWWTSNIVVLVGSLAYTLVKEH 331 (347)
T ss_pred EEEEecccceeeecHhHHHHHHHHHHHHHHHHHhhhheeeeeEEEEehhHHHHHHHHH
Confidence 3578889988888888888899999999999999999999999999999999886544
No 40
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.94 E-value=1.9e-08 Score=89.56 Aligned_cols=214 Identities=13% Similarity=0.050 Sum_probs=157.1
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCCCC---CCHHHH
Q 011986 197 LGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSGSP---PSVGDL 272 (473)
Q Consensus 197 ~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~~~---~~~G~~ 272 (473)
..++....+++|..+++..++++++.+....-.|+.++++ .+|+|+...++++.++++.|++++...|+. ...|+.
T Consensus 59 F~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~e~iGi~ 138 (290)
T KOG4314|consen 59 FSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHADEIIGIA 138 (290)
T ss_pred eEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhhhhhhHH
Confidence 3455677789999999999999999999999999999999 899999999999999999999999976543 468999
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCc-hhHHHHHHHHHHHHHHHHHH-HhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986 273 LNFLSAVFFGIHMLRTEHISRSTNKKDF-LPLLGYEVCVIALLSAVWYF-IGGSLGGTQGSDPSSWTWTMFWDWMVAFPW 350 (473)
Q Consensus 273 laL~aal~~a~~~i~~k~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
+++.++...|+|-++-|+.....+--+. ..+....++=......|..+ .+... ..|+.+....|
T Consensus 139 ~AV~SA~~aAlYKV~FK~~iGnAn~Gdaa~FmS~LGF~NL~~~~~~~lIL~~T~V--------------E~~qsFA~~PW 204 (290)
T KOG4314|consen 139 CAVGSAFMAALYKVLFKMFIGNANFGDAAHFMSCLGFFNLCFISFPALILAFTGV--------------EHLQSFAAAPW 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHhhhHHHHHHhch--------------HHHHHHhhCCc
Confidence 9999999999999999987654331111 11111111111112222211 11111 11222333357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
..+...+++...+. .+.+.++....|...++.+......-..++.++-+-..+.....|..+|+.|.+++....
T Consensus 205 G~l~G~A~L~lAFN-~~iN~GiaL~~PilISiG~l~~iP~NaaiDiL~q~l~~ntl~La~T~iI~i~FiLiiiP~ 278 (290)
T KOG4314|consen 205 GCLCGAAGLSLAFN-FLINFGIALLNPILISIGMLCGIPGNAAIDILFQELEFNTLFLAATCIICIGFILIIIPE 278 (290)
T ss_pred hhhhhHHHHHHHHh-hheeehhhhhchhhheehheecCcchhHHHHHHHHHHHHHHHHHHHHHHHHhHHheeccc
Confidence 77777777776443 445568888899999999888888888999876666788999999999999988887643
No 41
>PRK13499 rhamnose-proton symporter; Provisional
Probab=98.89 E-value=2.1e-06 Score=85.39 Aligned_cols=281 Identities=15% Similarity=0.028 Sum_probs=171.5
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHH-HHHHHHH---HHHHh-------hcCcccchhHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA-LSAIPFI---PFVLR-------ARDDVHTRNAGFELGLW 200 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~-~a~l~~~---~~~~~-------~~~~~~~~~~~ll~g~~ 200 (473)
...|++..+++.++||+.++..|.. .. -.+|..+.-.. ++.+++. ..+.. +..+...+...++.|++
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~-w~wE~~W~v~gi~~wl~~~~~~g~~~~~~f~~~~~~~~~~~~~~~~l~G~~ 82 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KK-WSWETMWSVGGIFSWLILPWLIAALLLPDFWAYYSSFSGSTLLPVFLFGAL 82 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CC-CchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhcCHHHHHHHHHHHHH
Confidence 4569999999999999999999984 32 34443332111 1111111 11111 12344556677788999
Q ss_pred HHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHH-HhcCcC---c----hHHHHHHHHHHHHhheeec----CC---
Q 011986 201 VSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLDG-MLGAIV---P----ARTWFGAVMSILGVALLES----SG--- 264 (473)
Q Consensus 201 ~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~~-~l~er~---s----~~~~~g~~lal~GV~li~~----~~--- 264 (473)
..+++..++.++++..++.+..|. .+.-++..++.. +++|-- + ..-.+|+++.++|+++... .+
T Consensus 83 W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~liliGi~l~s~Ag~~k~~~~ 162 (345)
T PRK13499 83 WGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALIGVAIVGRAGQLKERKM 162 (345)
T ss_pred HHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHhhhhccccc
Confidence 999999999999999999998885 788888888888 566533 2 3467899999999999765 11
Q ss_pred -------CCCCHHHHHHHHHHHHHHHHHH-------HHhhhhhcCCCCCchhHHHHHH---HHHHHHHHHHHHHh--ccC
Q 011986 265 -------SPPSVGDLLNFLSAVFFGIHML-------RTEHISRSTNKKDFLPLLGYEV---CVIALLSAVWYFIG--GSL 325 (473)
Q Consensus 265 -------~~~~~G~~laL~aal~~a~~~i-------~~k~~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~~~~--~~~ 325 (473)
..+..|.++++++.+.++.|+. ..+... . .+.++.....-+. +++.++.-..+-.. ...
T Consensus 163 ~~~~~~~~~~~KGi~ialisgi~~~~f~~~~~~~~~~~~~a~-~-~g~~~~~~~lp~~~~~~~G~~~~n~~~~~~~~~k~ 240 (345)
T PRK13499 163 GIKKAEEFNLKKGLILAVMSGIFSACFSFAMDAGKPMHEAAA-A-LGVDPLYAALPSYVVIMGGGAITNLGFCFIRLAKN 240 (345)
T ss_pred ccccccccchHhHHHHHHHHHHHHHHHHHHHhhccchhhhhh-h-cCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 2346899999999999999993 322211 1 1233332222222 23333322211111 010
Q ss_pred CCCC-CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHH----HHhhhHHHHHHHHHHHHhc
Q 011986 326 GGTQ-GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETA----IIYGLEPVWGAGFAWFILG 400 (473)
Q Consensus 326 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s----~l~~l~pv~a~l~~~il~g 400 (473)
.... ..+..... ...+ . -.++-.++++.-.+++.++..+.++.+..... +.+.+..+++.+.|+ ++|
T Consensus 241 ~~~~~~~~~~~~~-~~~~-----~-n~l~~~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lk 312 (345)
T PRK13499 241 KDLSLKADFSLAK-PLLI-----T-NVLLSALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLK 312 (345)
T ss_pred CCcccchhccccc-hhHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhh
Confidence 1100 00100000 0000 0 12233445555567888888888877544333 444788899999998 499
Q ss_pred Cccc------HhhHHHHHHHHHHHHHHhhc
Q 011986 401 ERWG------ATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 401 E~~~------~~~~~G~~lIl~g~~l~~~~ 424 (473)
|.=+ ..-++|.+++++|.+++.+.
T Consensus 313 E~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 313 EWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred hccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 9766 66689999999999888764
No 42
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=98.89 E-value=2.9e-08 Score=98.19 Aligned_cols=141 Identities=18% Similarity=0.116 Sum_probs=109.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986 266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM 345 (473)
Q Consensus 266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
....|.++++++++.|+...+..|.. . ++++....+++.+++.++..+............. .... +
T Consensus 5 ~~~~g~~~~l~a~~~wg~~~~~~k~~-~---~~~~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~-~~~~--~------- 70 (296)
T PRK15430 5 QTRQGVLLALAAYFIWGIAPAYFKLI-Y---YVPADEILTHRVIWSFFFMVVLMSICRQWSYLKT-LIQT--P------- 70 (296)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHh-c---CCCHHHHHHHHHHHHHHHHHHHHHHHccHHHHHH-HHcC--H-------
Confidence 44579999999999999999999754 3 3668899999999988777666544321100000 0000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
..+ .....+++..++.+.++++++++.+++.++++.++.|++..++++++++|+++..+++|+++.++|++++..
T Consensus 71 --~~~-~~~~~~~~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~ 145 (296)
T PRK15430 71 --QKI-FMLAVSAVLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLW 145 (296)
T ss_pred --HHH-HHHHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH
Confidence 112 234467777778899999999999999999999999999999999999999999999999999999988754
No 43
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.86 E-value=1.1e-07 Score=81.71 Aligned_cols=120 Identities=15% Similarity=0.127 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986 269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF 348 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (473)
.|+++.+++.++-+...++.|+-.++..+.+.. .. . . ..... ...
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~---~~--~---~-~~~~~-~~~------------------------- 46 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHA---WD--F---I-AALLA-FGL------------------------- 46 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccch---hH--H---H-HHHHH-Hhc-------------------------
Confidence 467889999999999999999777665433311 10 0 0 00000 000
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHH--HhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWF--ILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~i--l~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
-...+++|++..++++.+|++++++.+++.+..+..+.+++..+.++. +|||++++.+++|+++|++|++++...
T Consensus 47 -p~~~i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 47 -ALRAVLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred -cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 122578899999999999999999999999999999998888888875 799999999999999999999998754
No 44
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=98.85 E-value=3.3e-08 Score=97.37 Aligned_cols=260 Identities=14% Similarity=0.149 Sum_probs=150.6
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHH-HHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGL-WVSLGYLMQAL 210 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~-~~~~~~~l~~~ 210 (473)
...|+++++.++++.+....+.|......+.- -.|-. .+.....++..+..|+ ++.++..+.+.
T Consensus 5 ~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~---~~~~~------------~~~~~~l~~~~W~~G~~~~~~g~~~~~~ 69 (300)
T PF05653_consen 5 FYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRG---SLRAG------------SGGRSYLRRPLWWIGLLLMVLGEILNFV 69 (300)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc---ccccc------------chhhHHHhhHHHHHHHHHHhcchHHHHH
Confidence 45799999999999999999998864321110 00000 0000001122233333 35677788899
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC--CCC--CC----------HHH--HH
Q 011986 211 GLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS--GSP--PS----------VGD--LL 273 (473)
Q Consensus 211 al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~--~~~--~~----------~G~--~l 273 (473)
|+.+.|++..+.+..+.-++.++++. ++|||+++.++.|++++++|+.++... ... .. .+. .+
T Consensus 70 Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~~~~~~~~t~~~l~~~~~~~~fl~y~ 149 (300)
T PF05653_consen 70 ALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFAPKEEPIHTLDELIALLSQPGFLVYF 149 (300)
T ss_pred HHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeCCCCCCcCCHHHHHHHhcCcceehhH
Confidence 99999999999999999999999999 899999999999999999999876532 111 11 111 11
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHH----HHHHhccCCC-CCCCCCCCcchhhhhcccchh
Q 011986 274 NFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAV----WYFIGGSLGG-TQGSDPSSWTWTMFWDWMVAF 348 (473)
Q Consensus 274 aL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 348 (473)
.+...+...+.....+|.+++ +.+.+.....++++.-.+. ...+.....+ .....+ .
T Consensus 150 ~~~~~~~~~L~~~~~~r~g~~----~i~vyi~i~sl~Gs~tvl~~K~i~~~i~~~~~g~~~f~~~--------------~ 211 (300)
T PF05653_consen 150 ILVLVLILILIFFIKPRYGRR----NILVYISICSLIGSFTVLSAKAISILIKLTFSGDNQFTYP--------------L 211 (300)
T ss_pred HHHHHHHHHHHHhhcchhccc----ceEEEEEEeccccchhhhHHHHHHHHHHHHhcCchhhhhh--------------H
Confidence 122222222333333333222 1221111111111111110 0111111110 111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhH-HHHHHHHHHHHhcCcc--cH----hhHHHHHHHHHHHHHH
Q 011986 349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLE-PVWGAGFAWFILGERW--GA----TGWLGAALVLVGSLTV 421 (473)
Q Consensus 349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~-pv~a~l~~~il~gE~~--~~----~~~~G~~lIl~g~~l~ 421 (473)
.|..++.+ +.....+....|+|+++.+++.+.++.|.- ...+++-+.++|+|.- ++ ....|+.+++.|+++.
T Consensus 212 ~y~l~~~~-v~~~~~Q~~~LN~aL~~fd~~~V~P~~~v~~t~~~i~~g~i~f~e~~~~~~~~~~~~~~G~~~ii~GV~lL 290 (300)
T PF05653_consen 212 TYLLLLVL-VVTAVLQLYYLNKALKRFDTSLVVPVYYVFFTLSSIIGGAIFFQEFSRMTAWQIIGFLCGFLIIIIGVFLL 290 (300)
T ss_pred HHHHHHHH-HHHHHHHHHHHHHHHHhccceEEEeehhHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhhee
Confidence 24443333 444557788889999999999888887774 4466677788888753 34 3457888899998887
Q ss_pred hhcC
Q 011986 422 QIFG 425 (473)
Q Consensus 422 ~~~~ 425 (473)
...+
T Consensus 291 ~~~~ 294 (300)
T PF05653_consen 291 SSSK 294 (300)
T ss_pred eccC
Confidence 6543
No 45
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=98.83 E-value=9.2e-08 Score=92.51 Aligned_cols=140 Identities=14% Similarity=0.233 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986 269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF 348 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (473)
.|.++.++++++|+...+..|.+ . ++++....+++.++++++..++............ . ++.....
T Consensus 2 ~g~~~~i~a~~~wg~~~~~~k~~-~---~~~~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~-~---------~~~~~~~ 67 (256)
T TIGR00688 2 KGIIVSLLASFLFGYMYYYSKLL-K---PLPATDILGHRMIWSFPFMLLSVTLFRQWAALIE-R---------LKRIQKR 67 (256)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHh-c---cCCHHHHHHHHHHHHHHHHHHHHHHHcchHHHHH-H---------HhCcccc
Confidence 47899999999999999999863 2 3678999999999988777665544321100000 0 0000000
Q ss_pred h-HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 349 P-WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 349 ~-~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
. +..+...|++ .++.+.++++++++.+++.++.+.++.|+++.++++++++|+++..+++|.++.++|++++..
T Consensus 68 ~~~~~~~~~g~~-~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~ 142 (256)
T TIGR00688 68 PLILSLLLCGLL-IGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIV 142 (256)
T ss_pred hHHHHHHHHHHH-HHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHH
Confidence 1 2333444444 558899999999999999999999999999999999999999999999999999999887653
No 46
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.80 E-value=1.3e-07 Score=93.30 Aligned_cols=128 Identities=13% Similarity=0.156 Sum_probs=101.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc-ccc---hhHHHHHHHH-HHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD-VHT---RNAGFELGLW-VSLGYLM 207 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~-~~~---~~~~ll~g~~-~~~~~~l 207 (473)
..|.++.+.++++|+...+..|...++.++..+.+. ..++.+++.++....... ... +...+..|++ ..+++.+
T Consensus 147 ~~G~ll~l~aa~~~a~~~v~~r~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~lgv~~t~~~~~l 225 (293)
T PRK10532 147 LTGAALALGAGACWAIYILSGQRAGAEHGPATVAIG-SLIAALIFVPIGALQAGEALWHWSILPLGLAVAILSTALPYSL 225 (293)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHH-HHHHHHHHHHHHHHccCcccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 458999999999999999999998777888777554 455556666655544321 111 2123345555 3567889
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986 208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~ 261 (473)
+++++++.+++.++++.++.|+++.++++ ++||+++..+++|.++.++|+++..
T Consensus 226 ~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~ 280 (293)
T PRK10532 226 EMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGST 280 (293)
T ss_pred HHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999 8999999999999999999998764
No 47
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.76 E-value=2.3e-07 Score=93.89 Aligned_cols=140 Identities=15% Similarity=0.124 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986 269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF 348 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (473)
..++.+++.-++|+.+.++.|...+. ++++....++++.+++++++++..........+ ...|.
T Consensus 13 ~~~~~~~~~q~~~~~~~~~~k~a~~~--G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~-----~~~~~--------- 76 (358)
T PLN00411 13 VFLTAMLATETSVVGISTLFKVATSK--GLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLP-----PLSVS--------- 76 (358)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHC--CCCccHHHHHHHHHHHHHHHHHHHHHHHhcccC-----cchHH---------
Confidence 45577788889999999999987754 678999999999999999888876543211111 00111
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHH------hcCcccHhhHHHHHHHHHHHHHHh
Q 011986 349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFI------LGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il------~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
.|..+..+|+++ .+.+.+++.++++.+++.++++.++.|++++++++++ ++|+++..+++|.++-++|++++.
T Consensus 77 ~~~~l~l~g~~g-~~~~~~~~~gl~~tsa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~ 155 (358)
T PLN00411 77 ILSKIGLLGFLG-SMYVITGYIGIEYSNPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVI 155 (358)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHH
Confidence 356677777777 3566788899999999999999999999999999999 699999999999999999998877
Q ss_pred hcC
Q 011986 423 IFG 425 (473)
Q Consensus 423 ~~~ 425 (473)
..+
T Consensus 156 ~~~ 158 (358)
T PLN00411 156 FYH 158 (358)
T ss_pred Hcc
Confidence 543
No 48
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.74 E-value=1.9e-07 Score=92.38 Aligned_cols=127 Identities=15% Similarity=0.110 Sum_probs=96.6
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCc-----ccchhHHHHHHHHHHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDD-----VHTRNAGFELGLWVSLGYLM 207 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~-----~~~~~~~ll~g~~~~~~~~l 207 (473)
..|.++++.++++|+...++.|...++.++....+ ..+.+.+.+........ ...+...+..++...+++.+
T Consensus 155 ~~G~~~~l~aa~~~A~~~v~~k~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l 231 (295)
T PRK11689 155 PLSYGLAFIGAFIWAAYCNVTRKYARGKNGITLFF---ILTALALWIKYFLSPQPAMVFSLPAIIKLLLAAAAMGFGYAA 231 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccCCCCchhHHH---HHHHHHHHHHHHHhcCccccCCHHHHHHHHHHHHHHHHHHHH
Confidence 35889999999999999999999877778776533 22223333222222211 11222334445556678999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
+++++++.+++.++++.++.|++.+++++ ++||+++..+++|.++.+.|+++...
T Consensus 232 ~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 232 WNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 99999999999999999999999999999 89999999999999999999987654
No 49
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.68 E-value=4.8e-07 Score=89.29 Aligned_cols=129 Identities=12% Similarity=0.056 Sum_probs=103.2
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcc------cchhHHHHHHHH-HHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDV------HTRNAGFELGLW-VSLGY 205 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~------~~~~~~ll~g~~-~~~~~ 205 (473)
..|.++.++++++|+......|..... ++....++.+.++.+.+.++........ ..+...+..+++ ..+++
T Consensus 149 ~~G~l~~l~a~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~~ 227 (292)
T PRK11272 149 PWGAILILIASASWAFGSVWSSRLPLP-VGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIAI 227 (292)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999986433 3456677888888887777665433211 122233444554 45778
Q ss_pred HHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 206 LMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 206 ~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
.++++++++.+++.++++.++.|++++++++ ++||+++..+++|.++.+.|++++..
T Consensus 228 ~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~ 285 (292)
T PRK11272 228 SAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTL 285 (292)
T ss_pred HHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999 89999999999999999999988754
No 50
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.60 E-value=3.8e-07 Score=76.70 Aligned_cols=77 Identities=23% Similarity=0.553 Sum_probs=68.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 349 PWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
.|...+..|+++..+++.++.+++++.+ +.+..+..++|+++.++++++++|+++..+++|.+++++|++++.+.+.
T Consensus 33 ~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~ 109 (113)
T PF13536_consen 33 PWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDL 109 (113)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhc
Confidence 3555677788777799999999999999 4888999999999999999999999999999999999999999987543
No 51
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.59 E-value=1e-06 Score=83.35 Aligned_cols=60 Identities=15% Similarity=0.099 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHH
Q 011986 361 TGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLT 420 (473)
Q Consensus 361 ~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l 420 (473)
..+++.+..+.+++.++...+....++++++.++++++|||+++..+++|+.+++.|+.+
T Consensus 162 ~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 162 NVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 446666777899999999999999999999999999999999999999999999998654
No 52
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=98.53 E-value=7e-06 Score=77.00 Aligned_cols=259 Identities=10% Similarity=-0.011 Sum_probs=167.5
Q ss_pred ccCCh--HHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH
Q 011986 158 AITDP--SAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPL 233 (473)
Q Consensus 158 ~~~~p--~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~l 233 (473)
+++.| |.++++++++=..+.++.+... ++..-.|+....++.+......+-+-++.|++--.-.+...+--+=+.+
T Consensus 69 ~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~rtY~~la~~t~gtmGLsn~SlgYLNYPtQviFKccKliPVmi 148 (367)
T KOG1582|consen 69 EGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPWRTYVILAFLTVGTMGLSNGSLGYLNYPTQVIFKCCKLIPVMI 148 (367)
T ss_pred ccCcccchHHHHHHHHHHHhhhheEEEeecccceecchhHhhhhHhhhhhccccCcCccccccCcHHHHHHhhhhhhhhh
Confidence 46665 4566666655444444333211 2222345555566555555556666677777655444554444444445
Q ss_pred HHH-HhcCcCchHHHHHHHHHHHHhheeecCCC----C-CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHH
Q 011986 234 LDG-MLGAIVPARTWFGAVMSILGVALLESSGS----P-PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYE 307 (473)
Q Consensus 234 l~~-~l~er~s~~~~~g~~lal~GV~li~~~~~----~-~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~ 307 (473)
.+. +-|.|.++.+.++..+..+|+++....|+ + ...|+.+.-.+-++=|.-.-+.++..+..++. ...+.++.
T Consensus 149 ggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~s-s~EmvfyS 227 (367)
T KOG1582|consen 149 GGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPAS-SSEMVFYS 227 (367)
T ss_pred eeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCCC-cceEEEee
Confidence 555 45899999999999999999999887553 2 34677666666666666667777777765543 35567777
Q ss_pred HHHHHHHHHHHHHHhccCC-CCCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh
Q 011986 308 VCVIALLSAVWYFIGGSLG-GTQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL 386 (473)
Q Consensus 308 ~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l 386 (473)
..++.+.++..+...+... .+.+...+.+. .+...++.+..+. +++..-..-++..+|..++.+...
T Consensus 228 y~iG~vflf~~mvlTge~f~a~~fcaehp~~-----------tyGy~~~~s~~gy-lG~~~VLalI~~fGA~~aatvTTa 295 (367)
T KOG1582|consen 228 YGIGFVFLFAPMVLTGELFSAWTFCAEHPVR-----------TYGYAFLFSLAGY-LGIVFVLALIKLFGALIAATVTTA 295 (367)
T ss_pred ecccHHHHHHHHHhcccchhhhHHHHhCcHh-----------HHHHHHHHHHHhH-hhHHHHHHHHHHhchhHHHHHHHh
Confidence 7788887777766655421 22221111110 1333344444333 554444446777899999999999
Q ss_pred HHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 387 EPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 387 ~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
.--+++++++++|..+++....-|..+|+.|+++-.+.++.+.
T Consensus 296 RKavTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~ 338 (367)
T KOG1582|consen 296 RKAVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKI 338 (367)
T ss_pred HhHHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCC
Confidence 9999999999999999999999999999999998877664443
No 53
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.50 E-value=3.4e-06 Score=83.59 Aligned_cols=126 Identities=17% Similarity=0.170 Sum_probs=96.6
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhH
Q 011986 271 DLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPW 350 (473)
Q Consensus 271 ~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 350 (473)
.++++++++.|+...+..|.... ++++....+++..++++...++.. . . ... +
T Consensus 6 ~l~~l~~~~~Wg~~~~~~k~~~~---~~~p~~~~~~R~~~a~~~l~~~~~--~--~------~~~--------------~ 58 (299)
T PRK11453 6 GVLALLVVVVWGLNFVVIKVGLH---NMPPLMLAGLRFMLVAFPAIFFVA--R--P------KVP--------------L 58 (299)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHh---cCCHHHHHHHHHHHHHHHHHHHhc--C--C------CCc--------------h
Confidence 46788999999999999986654 466999999998887765544321 0 0 000 2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcc-cChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 351 IPALYTGIFSTGLCLWIEMAAMRD-VSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 351 ~~ll~lg~~~~~~~~~l~~~al~~-~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
..++..|++.....+.+++.++++ .+++.++++.++.|+++.++++++++|+++..+++|.++.++|+++...
T Consensus 59 ~~~~~~g~~~~~~~~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~ 132 (299)
T PRK11453 59 NLLLGYGLTISFGQFAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIE 132 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhcc
Confidence 233444555554555666778887 6889999999999999999999999999999999999999999888764
No 54
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=98.49 E-value=1.2e-06 Score=86.75 Aligned_cols=130 Identities=12% Similarity=0.096 Sum_probs=101.9
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCcc--c----------chhHHH---
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRARDDV--H----------TRNAGF--- 195 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~--~----------~~~~~l--- 195 (473)
..|.++.++++++|+...+..|...+ ++++.++.++.+.++.++++++........ . ......
T Consensus 144 ~~G~~~~l~a~~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (302)
T TIGR00817 144 WAGFLSAMISNITFVSRNIFSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVS 223 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHH
Confidence 46999999999999999999998877 789999999999999988888866432111 0 000011
Q ss_pred -HHHH-HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 196 -ELGL-WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 196 -l~g~-~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
..+. .....+.+++++++++++..++++..+.|++++++++ ++||+++..+++|.+++++|+.+...
T Consensus 224 ~~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 224 LVAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 1111 1122235667899999999999999999999999999 89999999999999999999987653
No 55
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.44 E-value=3.5e-06 Score=70.48 Aligned_cols=64 Identities=23% Similarity=0.315 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 199 LWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 199 ~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
+....++.++.+++++.|.+.+..+.++.++++.++++ ++|||+++++++|+.++++|++++..
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34567789999999999999999999999999999999 89999999999999999999988753
No 56
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.40 E-value=2.7e-06 Score=71.16 Aligned_cols=70 Identities=19% Similarity=0.251 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 354 LYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 354 l~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
..++++..++++.++.+++++.+.+.+-.+.++.++++.++++++|||++++.+++|.++|++|++++..
T Consensus 40 ~~~~~~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 40 LGLALACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3445577778999999999999999999999999999999999999999999999999999999987653
No 57
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.39 E-value=2.9e-06 Score=83.59 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=98.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHH----HHHHHHHHHHHhhcC-cccchhHHHHHHHHHHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFA----LSAIPFIPFVLRARD-DVHTRNAGFELGLWVSLGYLM 207 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~----~a~l~~~~~~~~~~~-~~~~~~~~ll~g~~~~~~~~l 207 (473)
.+|+++.+++.+.++......|.. +.+|+..++.... .+.+++.++ .+.+. ..+.....++.|++..+++.+
T Consensus 151 ~~Gi~~~l~sg~~y~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~Gi~~~ia~~~ 227 (290)
T TIGR00776 151 KKGILLLLMSTIGYLVYVVVAKAF--GVDGLSVLLPQAIGMVIGGIIFNLGH-ILAKPLKKYAILLNILPGLMWGIGNFF 227 (290)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHc--CCCcceehhHHHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHHHHHHHHHH
Confidence 469999999999999999999976 4788888555544 333333333 11111 111222344578888888999
Q ss_pred HHHHhh-ccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHH----HHHHHHHHHhheee
Q 011986 208 QALGLE-TSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTW----FGAVMSILGVALLE 261 (473)
Q Consensus 208 ~~~al~-~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~----~g~~lal~GV~li~ 261 (473)
|+.+++ +.+++.++++.+..|+...+.+. ++||+.+++++ +|.++.+.|+.++.
T Consensus 228 y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~ 287 (290)
T TIGR00776 228 YLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILG 287 (290)
T ss_pred HHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHh
Confidence 999999 99999999999999999999999 89999999999 99999999998764
No 58
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.33 E-value=2.2e-05 Score=69.37 Aligned_cols=125 Identities=21% Similarity=0.183 Sum_probs=103.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhh-------ccCChHHHHHHHHHHHHHHHHHHHHhhcCcc-----------------cc
Q 011986 135 SIILLNAITVVYASNIPVIKEVE-------AITDPSAFTVVRFALSAIPFIPFVLRARDDV-----------------HT 190 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~-------~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~-----------------~~ 190 (473)
|.++++.+.++.+...++.|... ...++.++.++-...+.+++.+.....++.. ..
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~ 80 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSSFFSEIFGEELSSDPNF 80 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhhhcchHHH
Confidence 56788999999999999998874 2678999999999999999888876543211 11
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986 191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 191 ~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l 259 (473)
....+..|++.++.+...+..++++++...+++..+--+++.++++ +++|+++..+++|++++++|+++
T Consensus 81 ~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~ 150 (153)
T PF03151_consen 81 IFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLL 150 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHhe
Confidence 2223345666777788999999999999999999999999999999 88999999999999999999975
No 59
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=98.32 E-value=1.7e-05 Score=77.37 Aligned_cols=130 Identities=20% Similarity=0.337 Sum_probs=99.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHH-HHHHHHHHHHHHHHHhhcC---cccchhHHHHHHHHHH-HHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTV-VRFALSAIPFIPFVLRARD---DVHTRNAGFELGLWVS-LGYLM 207 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~-~R~~~a~l~~~~~~~~~~~---~~~~~~~~ll~g~~~~-~~~~l 207 (473)
..|.++.+.++++|+...+..|... ..++....+ +.+........+....... ....+......|++.. +++.+
T Consensus 153 ~~g~~~~l~a~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~i~~~~ 231 (292)
T COG0697 153 LLGLLLALAAALLWALYTALVKRLS-RLGPVTLALLLQLLLALLLLLLFFLSGFGAPILSRAWLLLLYLGVFSTGLAYLL 231 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 4799999999999999999999876 667777766 4443222222222222221 2223444455666665 58999
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
+++++++.+++.++.+.++.|++..++++ +++|+++..+++|+++.+.|+.+....
T Consensus 232 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 232 WYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999 889999999999999999999886543
No 60
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=98.31 E-value=1.5e-05 Score=68.43 Aligned_cols=120 Identities=14% Similarity=-0.032 Sum_probs=88.0
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhh
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLE 213 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~ 213 (473)
+++++.++..++-+..-++.|...++.+..+..... ...+.. . .....+.++.-++...++.++.++++
T Consensus 2 ~~~~~i~~sv~l~~~gQl~~K~g~~~~g~~~~~~~~--~~~~~~--~-------~~p~~~i~lgl~~~~la~~~w~~aL~ 70 (129)
T PRK02971 2 MGYLWGLASVLLASVAQLSLKWGMSRLPLLSHAWDF--IAALLA--F-------GLALRAVLLGLAGYALSMLCWLKALR 70 (129)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHhhCCCccchhHH--HHHHHH--H-------hccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467888888888888999999887666554432211 000000 0 01111223333446788899999999
Q ss_pred ccchhHHHHHHHHHHHHHHHHHH---HhcCcCchHHHHHHHHHHHHhheeecCC
Q 011986 214 TSDAGRASFISMFTVIVVPLLDG---MLGAIVPARTWFGAVMSILGVALLESSG 264 (473)
Q Consensus 214 ~~~~~~asvi~~l~Pl~~~ll~~---~l~er~s~~~~~g~~lal~GV~li~~~~ 264 (473)
+.+++.+..+..+.+.++.++++ ++||++++.+++|+++.++||+++..++
T Consensus 71 ~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~~ 124 (129)
T PRK02971 71 YLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLPT 124 (129)
T ss_pred hCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccCC
Confidence 99999999999999888888887 5899999999999999999999987643
No 61
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=98.31 E-value=1.8e-05 Score=80.17 Aligned_cols=128 Identities=11% Similarity=0.079 Sum_probs=96.5
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhcc-------CChHHHHHHHHHHHHHHHHHHHHhhcCc------------ccc--h
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAI-------TDPSAFTVVRFALSAIPFIPFVLRARDD------------VHT--R 191 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~-------~~p~~~~~~R~~~a~l~~~~~~~~~~~~------------~~~--~ 191 (473)
..|.++++++.++|+...++.|...++ +++.++..+-..++.++++++....... ... .
T Consensus 193 ~~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~ 272 (350)
T PTZ00343 193 WLAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTK 272 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccch
Confidence 469999999999999999999988653 5677777777788888888776532110 001 1
Q ss_pred hHHHHHHHHHHHHHHH----HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986 192 NAGFELGLWVSLGYLM----QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL 260 (473)
Q Consensus 192 ~~~ll~g~~~~~~~~l----~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li 260 (473)
...+...+..++.+++ .+++++++++..+++...+-|+++.++++ +++|+++..+++|.+++++|+++.
T Consensus 273 ~~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lY 346 (350)
T PTZ00343 273 GIIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLY 346 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHH
Confidence 1111122223333344 44699999999999999999999999999 899999999999999999999764
No 62
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.30 E-value=2.8e-06 Score=81.87 Aligned_cols=265 Identities=14% Similarity=0.114 Sum_probs=162.0
Q ss_pred ccchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCccc-chhHHHHHH-HHHHHHHHH
Q 011986 130 SKKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVH-TRNAGFELG-LWVSLGYLM 207 (473)
Q Consensus 130 ~~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~-~~~~~ll~g-~~~~~~~~l 207 (473)
.+...|.++++.+.++.|.+..+-|..+..... ...|. .....+ ...+.+..| +.+.+|-.+
T Consensus 17 ~d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~---~~~ra-------------~~gg~~yl~~~~Ww~G~ltm~vGei~ 80 (335)
T KOG2922|consen 17 SDNIIGLVLAISSSIFIGSSFILKKKGLKRAGA---SGLRA-------------GEGGYGYLKEPLWWAGMLTMIVGEIA 80 (335)
T ss_pred cCceeeeeehhhccEEEeeehhhhHHHHHHHhh---hcccc-------------cCCCcchhhhHHHHHHHHHHHHHhHh
Confidence 455679999999999999999999876532211 11110 111111 111222333 347788888
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC--CC------------CCHHHH
Q 011986 208 QALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG--SP------------PSVGDL 272 (473)
Q Consensus 208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~--~~------------~~~G~~ 272 (473)
.|.|+.+.|++..+.+..+..++.++++. +++|+++....+|++++++|-.++.... .. ...+.+
T Consensus 81 NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~haP~e~~i~t~~el~~~~~~~~Fl 160 (335)
T KOG2922|consen 81 NFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHAPKEQEIESVEEVWELATEPGFL 160 (335)
T ss_pred hHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEecCcccccccHHHHHHHhcCccHH
Confidence 88999999999999999999999999999 9999999999999999999998876421 11 012221
Q ss_pred HHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHH-----HHHHHhccCCCCCCCCCCCcchhhhhcccch
Q 011986 273 LNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSA-----VWYFIGGSLGGTQGSDPSSWTWTMFWDWMVA 347 (473)
Q Consensus 273 laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (473)
.-.. +.-....++.-.+..++...+.+.+.....+++++-.. -.++-.......+...+
T Consensus 161 iy~~--~iil~~~il~~~~~p~~g~tnilvyi~i~s~iGS~tV~svKalg~aiklt~~g~~ql~~~-------------- 224 (335)
T KOG2922|consen 161 VYVI--IIILIVLILIFFYAPRYGQTNILVYIGICSLIGSLTVMSVKALGIAIKLTFSGNNQLFYP-------------- 224 (335)
T ss_pred HHHH--HHHHHHHHHheeecccccccceeehhhHhhhhcceeeeeHHHHHHHHHHHhcCCcccccH--------------
Confidence 1111 11111111222222333333555555544444321111 11111111111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh-HHHHHHHHHHHHhcCccc------HhhHHHHHHHHHHHHH
Q 011986 348 FPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL-EPVWGAGFAWFILGERWG------ATGWLGAALVLVGSLT 420 (473)
Q Consensus 348 ~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l-~pv~a~l~~~il~gE~~~------~~~~~G~~lIl~g~~l 420 (473)
..|..++.++.... .+....++|++..+++.+.++.|. -..++++-+.++|+|.-. .....|+..|+.|+++
T Consensus 225 ~ty~~~l~~~~~~~-~Q~~yLNkAL~~fntslV~PiyyV~fTtl~I~as~I~Fkew~~~~~~~i~~~~~Gf~ti~~G~fl 303 (335)
T KOG2922|consen 225 LTWIFLLVVATCVS-TQMNYLNKALDLFNTSIVSPIYYVMFTTLVILASAILFKEWSGQDALDIAGELCGFVTIFLGIFL 303 (335)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhhhhhcchhHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHhhheeeE
Confidence 13665555555444 777888999999999999999887 455777788888987543 3456799999999988
Q ss_pred HhhcCCC
Q 011986 421 VQIFGSS 427 (473)
Q Consensus 421 ~~~~~~~ 427 (473)
....|..
T Consensus 304 L~~~kd~ 310 (335)
T KOG2922|consen 304 LHRTKDM 310 (335)
T ss_pred eeeeccc
Confidence 8554433
No 63
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=98.27 E-value=1.7e-07 Score=86.55 Aligned_cols=264 Identities=13% Similarity=0.095 Sum_probs=177.2
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcC--cccchhHHHHHHHHHHHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARD--DVHTRNAGFELGLWVSLGYLMQALG 211 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~--~~~~~~~~ll~g~~~~~~~~l~~~a 211 (473)
..++.+++-++.||+.+.+.... +-.|.+-+..-.+-+.++.+.+++...+ +...+...++.|.+..++....+.|
T Consensus 2 ~~~liaL~P~l~WGsip~v~~k~--GG~p~qQ~lGtT~GALifaiiv~~~~~p~~T~~~~iv~~isG~~Ws~GQ~~Qfka 79 (288)
T COG4975 2 MDLLIALLPALGWGSIPLVANKF--GGKPYQQTLGTTLGALIFAIIVFLFVSPELTLTIFIVGFISGAFWSFGQANQFKA 79 (288)
T ss_pred hhHHHHHHHHHHhcccceeeeec--CCChhHhhhhccHHHHHHHHHHheeecCccchhhHHHHHHhhhHhhhhhhhhhhh
Confidence 35789999999999998776443 2367776665555555555555544322 2333445567788899999999999
Q ss_pred hhccchhHHHHHHH-HHHHHHHHHHH-HhcCcCchHH----HHHHHHHHHHhheeecCCC---------CCCHHHHHHHH
Q 011986 212 LETSDAGRASFISM-FTVIVVPLLDG-MLGAIVPART----WFGAVMSILGVALLESSGS---------PPSVGDLLNFL 276 (473)
Q Consensus 212 l~~~~~~~asvi~~-l~Pl~~~ll~~-~l~er~s~~~----~~g~~lal~GV~li~~~~~---------~~~~G~~laL~ 276 (473)
+++..++.+..+.. +.-+-+-+++. .++|.-+..+ .+++++.+.|+.+-...+. +...|....+.
T Consensus 80 ~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~kkgi~~L~i 159 (288)
T COG4975 80 IQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNLKKGIVILLI 159 (288)
T ss_pred eeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhhhhheeeeee
Confidence 99999999999964 55556667777 6899877654 4677888899988776432 23468888888
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHH
Q 011986 277 SAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYT 356 (473)
Q Consensus 277 aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~l 356 (473)
+.++|-.|.++.+... .+..+.+--.+..+ ++....+-.... ....+. ....-+.-
T Consensus 160 St~GYv~yvvl~~~f~--v~g~saiLPqAiGM----v~~ali~~~~~~---~~~~~K---------------~t~~nii~ 215 (288)
T COG4975 160 STLGYVGYVVLFQLFD--VDGLSAILPQAIGM----VIGALILGFFKM---EKRFNK---------------YTWLNIIP 215 (288)
T ss_pred eccceeeeEeeecccc--ccchhhhhHHHHHH----HHHHHHHhhccc---ccchHH---------------HHHHHHhh
Confidence 9999999999877654 23333332222222 222222222211 010010 11122333
Q ss_pred HHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986 357 GIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF 424 (473)
Q Consensus 357 g~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~ 424 (473)
|++ -+++...+..+.++.+.++.=.+.-+..+.+.+-|.++++|+=+..++ +|.+++++|..+....
T Consensus 216 G~~-Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg~~ 286 (288)
T COG4975 216 GLI-WAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLGIA 286 (288)
T ss_pred HHH-HHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhhee
Confidence 433 347777777888888887777778888899999999999999887765 6888999888776554
No 64
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.22 E-value=1.9e-05 Score=75.36 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=112.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccc
Q 011986 267 PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMV 346 (473)
Q Consensus 267 ~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 346 (473)
...|+++++.+-+.|+.-....|-+ + +++...+..++.+-+.++................. .-+
T Consensus 5 ~~~Gil~~l~Ay~lwG~lp~y~kll-~---~~~~~eIlahRviwS~~~~l~ll~~~r~~~~~~~~------------~~~ 68 (293)
T COG2962 5 SRKGILLALLAYLLWGLLPLYFKLL-E---PLPATEILAHRVIWSFPFMLALLFLLRQWRELKQL------------LKQ 68 (293)
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHH-c---cCCHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHH------------HhC
Confidence 3578999999999999999888755 3 34467788898888887777776665443222110 112
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 347 AFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 347 ~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
.+.+..++..+++.+ ....+|.+|........++...|++|++.++.|.++++|+++..||+..++..+|+....+...
T Consensus 69 p~~~~~~~l~a~li~-~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g 147 (293)
T COG2962 69 PKTLLMLALTALLIG-LNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLG 147 (293)
T ss_pred cHHHHHHHHHHHHHH-HHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC
Confidence 234555566666555 8999999999999999999999999999999999999999999999999999999988766554
Q ss_pred C
Q 011986 427 S 427 (473)
Q Consensus 427 ~ 427 (473)
.
T Consensus 148 ~ 148 (293)
T COG2962 148 S 148 (293)
T ss_pred C
Confidence 4
No 65
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.07 E-value=0.00011 Score=68.69 Aligned_cols=127 Identities=13% Similarity=0.142 Sum_probs=104.4
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhH----HHHHHHHH-HHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNA----GFELGLWV-SLGYL 206 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~----~ll~g~~~-~~~~~ 206 (473)
...|..+++.+..+|+...+.-|.+.+..+.-+-+.+-+.++.++.+++-......--.... .+..+++. .+-|.
T Consensus 146 Dp~Gv~~Al~AG~~Wa~YIv~G~r~g~~~~g~~g~a~gm~vAaviv~Pig~~~ag~~l~~p~ll~laLgvavlSSalPYs 225 (292)
T COG5006 146 DPVGVALALGAGACWALYIVLGQRAGRAEHGTAGVAVGMLVAALIVLPIGAAQAGPALFSPSLLPLALGVAVLSSALPYS 225 (292)
T ss_pred CHHHHHHHHHHhHHHHHHHHHcchhcccCCCchHHHHHHHHHHHHHhhhhhhhcchhhcChHHHHHHHHHHHHhcccchH
Confidence 35799999999999999999999887677888888999999999999987655443322222 23334443 34578
Q ss_pred HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhh
Q 011986 207 MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVA 258 (473)
Q Consensus 207 l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~ 258 (473)
+-..++.+.|...-+++..+.|.+.++.++ +++|+++..||+++...+++.+
T Consensus 226 LEmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 226 LEMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 889999999999999999999999999999 8999999999999998887765
No 66
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=98.03 E-value=1.5e-05 Score=75.07 Aligned_cols=245 Identities=14% Similarity=0.125 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh--cCcccchhHHHHHHHHHHHHHHHHHHHhhcc-chhHHHHHHHHHHHHHHHHHH-Hh
Q 011986 163 SAFTVVRFALSAIPFIPFVLRA--RDDVHTRNAGFELGLWVSLGYLMQALGLETS-DAGRASFISMFTVIVVPLLDG-ML 238 (473)
Q Consensus 163 ~~~~~~R~~~a~l~~~~~~~~~--~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~-~~~~asvi~~l~Pl~~~ll~~-~l 238 (473)
..++|.++++-..--+++.-.. .+++-.++.....-.+.+..+.+.++++++- +...=.++..-.++.++++++ ++
T Consensus 34 NLITFaqFlFia~eGlif~skf~~~k~kiplk~Y~i~V~mFF~vnv~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~ 113 (330)
T KOG1583|consen 34 NLITFAQFLFIATEGLIFTSKFFTVKPKIPLKDYAITVAMFFIVNVTNNYALKFNIPMPLHIIFRSGSLLANMILGWILL 113 (330)
T ss_pred eehHHHHHHHHHHhceeeeccccccCCCCchhhhheehheeeeeeeeccceeeecccceEEEEEecCcHHHHHHHHHHhc
Confidence 4566666666555444443111 1122234444555455666677788888773 443334455778889999999 78
Q ss_pred cCcCchHHHHHHHHHHHHhheeecC---CC---------C--------CCHHHHHHHHHHHHHHHHH----HHHhhhhhc
Q 011986 239 GAIVPARTWFGAVMSILGVALLESS---GS---------P--------PSVGDLLNFLSAVFFGIHM----LRTEHISRS 294 (473)
Q Consensus 239 ~er~s~~~~~g~~lal~GV~li~~~---~~---------~--------~~~G~~laL~aal~~a~~~----i~~k~~~~~ 294 (473)
|+|.+.+|..++++..+|+++.... +. + +..|+.+...+-+.-|.-. ...||.+|.
T Consensus 114 ~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh 193 (330)
T KOG1583|consen 114 GKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSDFFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKH 193 (330)
T ss_pred cceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCcccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999987632 10 0 1234443333333222222 333444432
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCC----CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011986 295 TNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQ----GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMA 370 (473)
Q Consensus 295 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~ 370 (473)
+-...+|. -.+.+|..++.+..--.. .......... ..-.-+..|..++. ..+.|.+-.+
T Consensus 194 -----~~EalFyt----H~LsLP~Flf~~~div~~~~~~~~se~~~~p~--~g~~vP~~~~yLl~-----n~L~Qy~Cik 257 (330)
T KOG1583|consen 194 -----WKEALFYT----HFLSLPLFLFMGDDIVSHWRLAFKSESYLIPL--LGFKVPSMWVYLLF-----NVLTQYFCIK 257 (330)
T ss_pred -----hHHHHHHH----HHhccchHHHhcchHHHHHHHHhcCcceeccc--cCccccHHHHHHHH-----HHHHHHHHHH
Confidence 33333332 233344443332210000 0000000000 00001112333333 2233333333
Q ss_pred H----hcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 371 A----MRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 371 a----l~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
+ -.+.++.++++...+.-.++++++++.|+.+++++.|+|++++..|.++..-
T Consensus 258 gVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 258 GVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred hhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 3 3445677888889999999999999999999999999999999999988664
No 67
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.96 E-value=7.9e-05 Score=62.88 Aligned_cols=70 Identities=10% Similarity=0.098 Sum_probs=60.0
Q ss_pred HHHHHHHHHHHHHHHHhcccChhHHH-HHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 356 TGIFSTGLCLWIEMAAMRDVSATETA-IIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 356 lg~~~~~~~~~l~~~al~~~~a~~~s-~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
+.++..+++++++.+++++++.+.+= +...+..+.+.+.++++|||++++.+++|.++|++|++......
T Consensus 35 ~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~~ 105 (120)
T PRK10452 35 LMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSGT 105 (120)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcCC
Confidence 45566678999999999999977654 44578999999999999999999999999999999998886544
No 68
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.82 E-value=0.00065 Score=67.79 Aligned_cols=76 Identities=13% Similarity=0.208 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
|...+.+|++-. .+.++.+.|+++.+.+.+.++.....+++++++++++++++++.+++|+++.++|+.++.....
T Consensus 79 ~w~y~lla~~Dv-~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~ 154 (334)
T PF06027_consen 79 WWKYFLLALLDV-EANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDV 154 (334)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeecc
Confidence 444566677776 8888899999999999999999999999999999999999999999999999999988877653
No 69
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.75 E-value=0.00028 Score=58.78 Aligned_cols=70 Identities=19% Similarity=0.354 Sum_probs=59.8
Q ss_pred HHHHHHHHHHHHHHHHhcccChhHH-HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 356 TGIFSTGLCLWIEMAAMRDVSATET-AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 356 lg~~~~~~~~~l~~~al~~~~a~~~-s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
..++..++++.++..++++++.+.+ ++...+..+.+.+.++++|||++++.+++|+++|++|++.....+
T Consensus 35 ~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~~ 105 (110)
T PRK09541 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 4456667889999999999997665 555778899999999999999999999999999999999886543
No 70
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.68 E-value=0.00091 Score=64.31 Aligned_cols=125 Identities=15% Similarity=0.085 Sum_probs=92.8
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhc--CcccchhHHHHHHHHHHHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRAR--DDVHTRNAGFELGLWVSLGYLMQA 209 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~--~~~~~~~~~ll~g~~~~~~~~l~~ 209 (473)
.+++++.++++.+.+....++.|. .+++++...+-...-.++..+++....+ ...+.-...++.|++..+++++++
T Consensus 136 ~~kgi~~Ll~stigy~~Y~~~~~~--~~~~~~~~~lPqaiGm~i~a~i~~~~~~~~~~~k~~~~nil~G~~w~ignl~~~ 213 (269)
T PF06800_consen 136 MKKGILALLISTIGYWIYSVIPKA--FHVSGWSAFLPQAIGMLIGAFIFNLFSKKPFFEKKSWKNILTGLIWGIGNLFYL 213 (269)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHh--cCCChhHhHHHHHHHHHHHHHHHhhcccccccccchHHhhHHHHHHHHHHHHHH
Confidence 457899999999999888888886 4578887777554433333333333222 222334455788999999999999
Q ss_pred HHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHH----HHHHHHHHhh
Q 011986 210 LGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWF----GAVMSILGVA 258 (473)
Q Consensus 210 ~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~----g~~lal~GV~ 258 (473)
++.+....+.+-.+..+..++..+.+. ++||+-+++|+. |+++.++|.+
T Consensus 214 is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~i 267 (269)
T PF06800_consen 214 ISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAI 267 (269)
T ss_pred HhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhh
Confidence 999999999999999999999999998 889999888654 5555555554
No 71
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.64 E-value=0.0017 Score=64.50 Aligned_cols=131 Identities=18% Similarity=0.091 Sum_probs=97.0
Q ss_pred HHHHHHHHHhhhhhcCCCC-CchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhhHHHHHHHHH
Q 011986 280 FFGIHMLRTEHISRSTNKK-DFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPALYTGI 358 (473)
Q Consensus 280 ~~a~~~i~~k~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~ 358 (473)
++..+.+..+++.++.... .+..+.+.+.....+...+....... ... ... .+...+..++
T Consensus 11 ~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~~--~~~--~~~--------------~~~~~~~~~~ 72 (303)
T PF08449_consen 11 GCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFKF--PKS--RKI--------------PLKKYAILSF 72 (303)
T ss_pred HHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhccc--cCC--CcC--------------hHHHHHHHHH
Confidence 3445667777777765544 46777777777777777666554440 000 100 1333445555
Q ss_pred HHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 359 FSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 359 ~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
+.. ++..+-+.++++++.....+.....|+..++++++++|++.+..++++.+++.+|+++....+.+..
T Consensus 73 ~~~-~~~~~~~~al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~ 142 (303)
T PF08449_consen 73 LFF-LASVLSNAALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSS 142 (303)
T ss_pred HHH-HHHHHHHHHHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccc
Confidence 444 7778888999999999999999999999999999999999999999999999999999887665444
No 72
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.60 E-value=0.0018 Score=53.65 Aligned_cols=68 Identities=15% Similarity=0.213 Sum_probs=57.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986 193 AGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL 260 (473)
Q Consensus 193 ~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li 260 (473)
+.+........+++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++++.+.+.||+.+
T Consensus 37 ~~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 37 YGILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 3444555677888999999999999998555 6788888999998 899999999999999999999875
No 73
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=97.57 E-value=1.1e-05 Score=75.65 Aligned_cols=137 Identities=20% Similarity=0.273 Sum_probs=97.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986 266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM 345 (473)
Q Consensus 266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
..+.|..+.-++ .++-...++.++.... ++........++-.++..|..+..-... ...... .
T Consensus 35 ~p~~gl~l~~vs-~ff~~~~vv~t~~~e~----~p~e~a~~r~l~~mlit~pcliy~~~~v-~gp~g~-R---------- 97 (346)
T KOG4510|consen 35 KPNLGLLLLTVS-YFFNSCMVVSTKVLEN----DPMELASFRLLVRMLITYPCLIYYMQPV-IGPEGK-R---------- 97 (346)
T ss_pred CCccCceehhhH-HHHhhHHHhhhhhhcc----ChhHhhhhhhhhehhhhheEEEEEeeee-ecCCCc-E----------
Confidence 457888888888 8888888888776543 3444555554554455544443332211 000000 0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
-| ++.=|+.++ .+.++.+|++++.+.+.+.++....|+++++++|++++|+.+....+|..+-+.|++++.+..
T Consensus 98 ---~~--LiLRg~mG~-tgvmlmyya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPp 171 (346)
T KOG4510|consen 98 ---KW--LILRGFMGF-TGVMLMYYALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPP 171 (346)
T ss_pred ---EE--EEeehhhhh-hHHHHHHHHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCC
Confidence 01 334455555 777788889999999999999999999999999999999999999999999999999887643
No 74
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.55 E-value=0.00077 Score=55.10 Aligned_cols=68 Identities=25% Similarity=0.345 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHhcccChh-HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 357 GIFSTGLCLWIEMAAMRDVSAT-ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 357 g~~~~~~~~~l~~~al~~~~a~-~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.+++.+++|.++..++|+++.+ -.++..-+-.+.+.+.++++|||+.++.+++|.+++++|++.....
T Consensus 36 ~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 36 TIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred HHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3445568899999999999865 5688889999999999999999999999999999999999887653
No 75
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.53 E-value=0.0034 Score=52.10 Aligned_cols=65 Identities=18% Similarity=0.394 Sum_probs=57.0
Q ss_pred HHHHHHHHHHHHHHhcccChhH-HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 358 IFSTGLCLWIEMAAMRDVSATE-TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 358 ~~~~~~~~~l~~~al~~~~a~~-~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
++..++++.++..++|+++.+. .++...+..+.+.+.++++|||++++.+++|+++|++|++...
T Consensus 42 ~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~lk 107 (109)
T PRK10650 42 LAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMIK 107 (109)
T ss_pred HHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhc
Confidence 4556688999999999999654 5777788999999999999999999999999999999998764
No 76
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.48 E-value=0.00099 Score=54.91 Aligned_cols=66 Identities=20% Similarity=0.244 Sum_probs=58.3
Q ss_pred HHHHHHHHHHHHHHhcccChh-HHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 358 IFSTGLCLWIEMAAMRDVSAT-ETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 358 ~~~~~~~~~l~~~al~~~~a~-~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
+++.++++.++..++|+++.+ ..++..-+..+.+.+.++++|||++++.+++|+.+|++|++....
T Consensus 36 i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 36 VTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 556668899999999999865 457778899999999999999999999999999999999988754
No 77
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.0028 Score=51.81 Aligned_cols=72 Identities=18% Similarity=0.191 Sum_probs=60.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 191 ~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
..+.++.-+....++.++..++++.|.+.+-.+ ...--+.+++.++ ++||+++..+++++.+.++|++.+-.
T Consensus 30 ~~~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~ 103 (106)
T COG2076 30 LWPSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKL 103 (106)
T ss_pred cchHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhh
Confidence 334455556678888999999999999998544 7888889999999 89999999999999999999987654
No 78
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.43 E-value=0.0072 Score=52.57 Aligned_cols=124 Identities=15% Similarity=0.166 Sum_probs=96.4
Q ss_pred HHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcC-cc----cchhHHHHHHHHHHHHHHHHH
Q 011986 136 IILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARD-DV----HTRNAGFELGLWVSLGYLMQA 209 (473)
Q Consensus 136 ~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~-~~----~~~~~~ll~g~~~~~~~~l~~ 209 (473)
+++++++..+.+....++-.+.+..+ |+.-.++.+..+++.+..+....++ +. +..+|.++-|+++.....+..
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVPWWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCChHHhccHHHHHHHHHHHH
Confidence 56777778888888888877767776 9999999999999999888776654 21 234455567888888888999
Q ss_pred HHhhccchhHHHHHHHHHHHHH-HHHHH--Hh---cCcCchHHHHHHHHHHHHhhe
Q 011986 210 LGLETSDAGRASFISMFTVIVV-PLLDG--ML---GAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 210 ~al~~~~~~~asvi~~l~Pl~~-~ll~~--~l---~er~s~~~~~g~~lal~GV~l 259 (473)
+.+....++.+..+....=++. .++.. ++ ++++++.+.+|+++.++|+++
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 9999999999888876555544 44555 33 689999999999999999875
No 79
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=97.43 E-value=0.11 Score=51.47 Aligned_cols=282 Identities=12% Similarity=0.039 Sum_probs=163.4
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh-----------cCcccchhHHHHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA-----------RDDVHTRNAGFELGLWV 201 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~-----------~~~~~~~~~~ll~g~~~ 201 (473)
..|+++..++.++-|+..+-.|.. ++. .+|..+.-..+..-+.+|++.-. ..+.....+..+.|++.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv-k~W-sWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~lW 83 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV-KGW-SWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGVLW 83 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc-CCc-cHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHHHH
Confidence 468999999999999999988886 333 44444444444444444443321 12334556667789999
Q ss_pred HHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHHHh--------cCcCchHHHHHHHHHHHHhheeecCC--------
Q 011986 202 SLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDGML--------GAIVPARTWFGAVMSILGVALLESSG-------- 264 (473)
Q Consensus 202 ~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~~l--------~er~s~~~~~g~~lal~GV~li~~~~-------- 264 (473)
+++-..|=.+++|+..+...-| ..+.-++-.++-.++ ..+-....++|++++++|++++...+
T Consensus 84 GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~~~ 163 (344)
T PF06379_consen 84 GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKELG 163 (344)
T ss_pred hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhhhc
Confidence 9999999999999988776433 456555555554432 22333467899999999999986432
Q ss_pred -----CCCCHHHHHHHHHHHHHHHHHHHHhhhh---h--cCCCCCchh----HHHHHHHHHHHHHHHHHHHhccC-CCCC
Q 011986 265 -----SPPSVGDLLNFLSAVFFGIHMLRTEHIS---R--STNKKDFLP----LLGYEVCVIALLSAVWYFIGGSL-GGTQ 329 (473)
Q Consensus 265 -----~~~~~G~~laL~aal~~a~~~i~~k~~~---~--~~~~~~~~~----~~~~~~l~~~~~~~~~~~~~~~~-~~~~ 329 (473)
.++..|.++++++.+.-|..++-...-. + ...+.+++. .....+..+.+.-+.+.+..... ....
T Consensus 164 ~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~ag~pi~~~a~a~G~~~l~~~l~~~vvv~~GGf~tN~~yc~~~l~~~k~~s 243 (344)
T PF06379_consen 164 EEAKEFNFKKGLIIAVLSGVMSACFNFGLDAGKPIHEAAVAAGVNPLYANLPVYVVVLWGGFITNLIYCLILLAKNKNWS 243 (344)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHcCCCcHHHhCchhhhhhhhHHHHHHHHHHHHHhhcCCCc
Confidence 2345899999999998888887654211 1 111122211 11111222223333333322111 1110
Q ss_pred CCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHHhcccC----hhHHHHHhhhHHHHHHHHHHHHhcCc---
Q 011986 330 GSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMAAMRDVS----ATETAIIYGLEPVWGAGFAWFILGER--- 402 (473)
Q Consensus 330 ~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~----a~~~s~l~~l~pv~a~l~~~il~gE~--- 402 (473)
....... -..+....+...+..|++=. .++.+|.++-.+++ ..--.+.+.+..+++-+++++ ++|.
T Consensus 244 ~~~d~~~-----~~~~~~~N~~~~aLaG~lWy-~qfffYg~G~s~lg~~~~~~sW~i~ma~~vl~snvwGl~-lkEWKg~ 316 (344)
T PF06379_consen 244 WKGDYSV-----AKPPLLKNYLFCALAGVLWY-SQFFFYGMGESKLGASGPFSSWAIHMALIVLFSNVWGLI-LKEWKGA 316 (344)
T ss_pred ccccccc-----ccchhHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCccccHHHHHHHHHHHHHHHHHHHH-HHHhccC
Confidence 0000000 00011122333344444333 66777777766665 456677788889999999975 5663
Q ss_pred ---ccHhhHHHHHHHHHHHHHHhh
Q 011986 403 ---WGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 403 ---~~~~~~~G~~lIl~g~~l~~~ 423 (473)
.-..-++|++++++++.++-+
T Consensus 317 s~kt~~vl~~G~~vlI~s~~ivG~ 340 (344)
T PF06379_consen 317 SKKTIRVLVLGIAVLILSVVIVGY 340 (344)
T ss_pred CcccHHHHHHHHHHHHHHHHHHhc
Confidence 334557899999998887654
No 80
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=97.42 E-value=0.0072 Score=52.60 Aligned_cols=132 Identities=15% Similarity=0.155 Sum_probs=93.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986 270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP 349 (473)
Q Consensus 270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (473)
..++++++++.-++...+..++.++.. ++..........+.+....+.+..+.. .........
T Consensus 2 ~~lla~~aG~~i~~q~~~N~~L~~~~g--s~~~as~i~~~~G~i~~~i~~~~~~~~-~~~~~~~~p-------------- 64 (138)
T PF04657_consen 2 YILLALLAGALIALQAAFNGQLGKALG--SPLVASFISFGVGFILLLIILLITGRP-SLASLSSVP-------------- 64 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHHHHHhccc-ccchhccCC--------------
Confidence 357889999999999999999987654 467677777777777777776666543 111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhh-HHHHHHHHHHH----HhcCcccHhhHHHHHHHHHHHHH
Q 011986 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGL-EPVWGAGFAWF----ILGERWGATGWLGAALVLVGSLT 420 (473)
Q Consensus 350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l-~pv~a~l~~~i----l~gE~~~~~~~~G~~lIl~g~~l 420 (473)
|. .++|++...+...+..+.+++++++....+... |.+.+.++|.+ .-++++++.+++|.+++++|+++
T Consensus 65 ~w--~~lGG~lG~~~V~~~~~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 65 WW--AYLGGLLGVFFVLSNIILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred hH--HhccHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 22 234555554666677778999998777666555 88889999986 23578999999999999999763
No 81
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.42 E-value=0.0022 Score=52.84 Aligned_cols=71 Identities=10% Similarity=0.108 Sum_probs=59.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 192 NAGFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 192 ~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
.+.+..-+....+++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++++.+.++||+.+..
T Consensus 30 ~~~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 30 TPSIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 33344556677888999999999999998555 6788888999999 89999999999999999999998743
No 82
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.42 E-value=0.0032 Score=53.17 Aligned_cols=70 Identities=14% Similarity=0.258 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 194 GFELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
.++..++..++++++..++++.|.+.+-.+ ..+.-+.+.+++. ++||++++.+++|+.+.++||+++-..
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 345556677889999999999999999777 5788889999999 899999999999999999999887543
No 83
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=97.39 E-value=0.0012 Score=65.28 Aligned_cols=122 Identities=22% Similarity=0.317 Sum_probs=87.5
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986 266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM 345 (473)
Q Consensus 266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
.+..|.+++++++++.+....+.|+-..+.++.. ..-.. . .... . ..
T Consensus 4 ~~~iGv~lav~ss~~~~~g~~lqk~~~~r~~~~~-~~~~~--~------~~~~--l------------~~---------- 50 (300)
T PF05653_consen 4 DFYIGVLLAVVSSIFIAVGFNLQKKSHLRLPRGS-LRAGS--G------GRSY--L------------RR---------- 50 (300)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-ccccc--h------hhHH--H------------hh----------
Confidence 3457999999999999999999998665544211 00000 0 0000 0 00
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
..-+.|.+..+++..+-..|+...+++.++++..+..++..+++.+++||+++...++|++++++|..++....
T Consensus 51 ------~~W~~G~~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv~~~ 124 (300)
T PF05653_consen 51 ------PLWWIGLLLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIVIFA 124 (300)
T ss_pred ------HHHHHHHHHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeEEeC
Confidence 01122333344555666678999999999999999999999999999999999999999999999998877654
Q ss_pred C
Q 011986 426 S 426 (473)
Q Consensus 426 ~ 426 (473)
.
T Consensus 125 ~ 125 (300)
T PF05653_consen 125 P 125 (300)
T ss_pred C
Confidence 3
No 84
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.36 E-value=0.0043 Score=51.66 Aligned_cols=68 Identities=18% Similarity=0.217 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 195 FELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 195 ll~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
+..-+....+++++..++++.|.+.+-.+ ..+.-+.+.++++ ++||++++.+++|+.+.++||+++..
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l 103 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 34445567778889999999999999666 6788888999999 89999999999999999999998754
No 85
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=97.26 E-value=0.0011 Score=55.00 Aligned_cols=109 Identities=20% Similarity=0.241 Sum_probs=75.9
Q ss_pred HHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhccchhH
Q 011986 140 NAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGR 219 (473)
Q Consensus 140 l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~ 219 (473)
++..++||...+++|....+.++..-.. +..-.... -...++..+.. +++-.+-..|++.+...+.+.
T Consensus 2 l~Vg~~WG~Tnpfik~g~~~~~~~~~~~-~~~~~~~~----------Ll~n~~y~ipf-~lNq~GSv~f~~~L~~~dlSl 69 (113)
T PF10639_consen 2 LLVGILWGCTNPFIKRGSSGLEKVKASL-QLLQEIKF----------LLLNPKYIIPF-LLNQSGSVLFFLLLGSADLSL 69 (113)
T ss_pred eeehHHhcCchHHHHHHHhhcCCccchH-HHHHHHHH----------HHHhHHHHHHH-HHHHHHHHHHHHHHhcCCcee
Confidence 3467899999999998866554333321 21111111 01112222222 336677788999999999999
Q ss_pred HHHHH-HHHHHHHHHHHHHhcCcC-chHHHHHHHHHHHHhhee
Q 011986 220 ASFIS-MFTVIVVPLLDGMLGAIV-PARTWFGAVMSILGVALL 260 (473)
Q Consensus 220 asvi~-~l~Pl~~~ll~~~l~er~-s~~~~~g~~lal~GV~li 260 (473)
+..+. .+.=+||++.+++++|+. +++.++|+++.+.|+.+.
T Consensus 70 avPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 70 AVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred eehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 99995 888899999999776655 677899999999999875
No 86
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=97.07 E-value=0.002 Score=51.99 Aligned_cols=58 Identities=24% Similarity=0.426 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHHHHhcccChhHH-HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHH
Q 011986 357 GIFSTGLCLWIEMAAMRDVSATET-AIIYGLEPVWGAGFAWFILGERWGATGWLGAALV 414 (473)
Q Consensus 357 g~~~~~~~~~l~~~al~~~~a~~~-s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lI 414 (473)
.+...++++.++.+++|+++.+.+ ++...+..+...+.++++|||++++.+++|..+|
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 444667889999999999998887 6667799999999999999999999999999886
No 87
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=97.01 E-value=0.0035 Score=60.01 Aligned_cols=133 Identities=17% Similarity=0.133 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986 270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP 349 (473)
Q Consensus 270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (473)
|++.+++++++|+...+=.||... -|.+.+..+......+..+.+.+..+.+..
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~~----gDg~~fQw~~~~~i~~~g~~v~~~~~~p~f---------------------- 54 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFDT----GDGFFFQWVMCSGIFLVGLVVNLILGFPPF---------------------- 54 (254)
T ss_pred CchhHHHHHHHhcccceeeEeccC----CCcHHHHHHHHHHHHHHHHHHHHhcCCCcc----------------------
Confidence 567899999999999998886643 346655555555555555555554432111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHH-HHhhhHHHHHHHHHHH-HhcCcc-----cHhhHHHHHHHHHHHHHHh
Q 011986 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETA-IIYGLEPVWGAGFAWF-ILGERW-----GATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s-~l~~l~pv~a~l~~~i-l~gE~~-----~~~~~~G~~lIl~g~~l~~ 422 (473)
..+..+|+..-..+..+-.-.++.++.+..- +....+.+.+...+.+ +||+.+ .+..++|++++++|..+..
T Consensus 55 -~p~amlgG~lW~~gN~~~vpii~~iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~ 133 (254)
T PF07857_consen 55 -YPWAMLGGALWATGNILVVPIIKTIGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFS 133 (254)
T ss_pred -eeHHHhhhhhhhcCceeehhHhhhhhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHhee
Confidence 1122233322223333333455555544332 3344466677776654 565432 4788899999999999888
Q ss_pred hcCCCCC
Q 011986 423 IFGSSSP 429 (473)
Q Consensus 423 ~~~~~~~ 429 (473)
.-|...+
T Consensus 134 fik~~~~ 140 (254)
T PF07857_consen 134 FIKSEEK 140 (254)
T ss_pred eecCCCC
Confidence 7766553
No 88
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=96.76 E-value=0.0075 Score=57.82 Aligned_cols=77 Identities=17% Similarity=0.281 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCCC
Q 011986 351 IPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 351 ~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~~ 428 (473)
..+.+-+++ ..++..+.+.++++++++...++..+..+++.++.+++++.+++..||++..++++|+.+........
T Consensus 18 ~~~~vPA~l-Y~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~~ 94 (244)
T PF04142_consen 18 LKLAVPALL-YAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQS 94 (244)
T ss_pred HHHHHHHHH-HHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCccc
Confidence 334444444 34777888899999999999999999999999999999999999999999999999999988765543
No 89
>PRK13499 rhamnose-proton symporter; Provisional
Probab=96.72 E-value=0.015 Score=58.20 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=89.7
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHH-HHHHHHHHHHHH-HHhccCCCCCCCCCCCcchhhhhcc
Q 011986 267 PSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYE-VCVIALLSAVWY-FIGGSLGGTQGSDPSSWTWTMFWDW 344 (473)
Q Consensus 267 ~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 344 (473)
...|+++.+++++|++.+++-.||. +.-+ .. .+ |. ..+..-+..|+. ........ ......
T Consensus 5 ~~~G~~~~~i~~~~~GS~~~p~K~~-k~w~---wE-~~-W~v~gi~~wl~~~~~~g~~~~~~f-----------~~~~~~ 67 (345)
T PRK13499 5 IILGIIWHLIGGASSGSFYAPFKKV-KKWS---WE-TM-WSVGGIFSWLILPWLIAALLLPDF-----------WAYYSS 67 (345)
T ss_pred hHHHHHHHHHHHHHhhccccccccc-CCCc---hh-HH-HHHHHHHHHHHHHHHHHHHHhhhH-----------HHHHHh
Confidence 4579999999999999999999874 3222 11 22 21 111111112211 11110000 000111
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcc---c----HhhHHHHHHHHH
Q 011986 345 MVAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERW---G----ATGWLGAALVLV 416 (473)
Q Consensus 345 ~~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~---~----~~~~~G~~lIl~ 416 (473)
.+...+. ..+++++.-.+++..+..++++.+.+...++ .-++-+++.+++.+++||-. + ..-++|.+++++
T Consensus 68 ~~~~~~~-~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 68 FSGSTLL-PVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred cCHHHHH-HHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 1112233 4445555556999999999999998776655 45688899999999999765 2 346789999999
Q ss_pred HHHHHhhcCCCCC
Q 011986 417 GSLTVQIFGSSSP 429 (473)
Q Consensus 417 g~~l~~~~~~~~~ 429 (473)
|+++..+...++.
T Consensus 147 Gi~l~s~Ag~~k~ 159 (345)
T PRK13499 147 GVAIVGRAGQLKE 159 (345)
T ss_pred HHHHHHHhhhhcc
Confidence 9999998655444
No 90
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.69 E-value=0.08 Score=46.30 Aligned_cols=137 Identities=16% Similarity=0.142 Sum_probs=86.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchh
Q 011986 269 VGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAF 348 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 348 (473)
+..+.+++++++-.+..-+..++.+..+ +|+.......+.+++++..+.+............... .
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~--spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~p-w----------- 70 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLG--SPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAP-W----------- 70 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCc-h-----------
Confidence 4567888888888888888888877654 4666666767777777776666644333222111111 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcccC-hhHHHHHhhhHHHHHHHHHHHHhc----CcccHhhHHHHHHHHHHHHHHhh
Q 011986 349 PWIPALYTGIFSTGLCLWIEMAAMRDVS-ATETAIIYGLEPVWGAGFAWFILG----ERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 349 ~~~~ll~lg~~~~~~~~~l~~~al~~~~-a~~~s~l~~l~pv~a~l~~~il~g----E~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
|. +.|++...+-...-.....+++ +........-|.+.++++|.+=+. .+++...++|++++++|+++...
T Consensus 71 -W~---~~GG~lGa~~vt~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~~ 146 (150)
T COG3238 71 -WA---WIGGLLGAIFVTSSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLARR 146 (150)
T ss_pred -HH---HHccchhhhhhhhhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhcc
Confidence 22 2222222111122223556665 456666777799999999987654 68899999999999999665544
No 91
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.57 E-value=0.028 Score=45.32 Aligned_cols=56 Identities=16% Similarity=0.284 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHH
Q 011986 197 LGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVM 252 (473)
Q Consensus 197 ~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~l 252 (473)
.......+++++..++++.|.+.+-.+ ..+..+.+.+++. ++||+++..+++|+.+
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~l 92 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGL 92 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheee
Confidence 334567888999999999999999665 5789999999999 8999999999999876
No 92
>PF07857 DUF1632: CEO family (DUF1632); InterPro: IPR012435 These sequences are found in hypothetical eukaryotic proteins of unknown function. The region concerned is approximately 280 residues long.
Probab=96.51 E-value=0.048 Score=52.26 Aligned_cols=159 Identities=14% Similarity=0.113 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLET 214 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~ 214 (473)
|++..+++++++|++++-.|... .-+++.+-++-....++.-+++... +...+...+.++-|.+...++.+-+-.++.
T Consensus 1 G~~a~~va~~~fGs~~vPvK~~~-~gDg~~fQw~~~~~i~~~g~~v~~~-~~~p~f~p~amlgG~lW~~gN~~~vpii~~ 78 (254)
T PF07857_consen 1 GYIACIVAVLFFGSNFVPVKKFD-TGDGFFFQWVMCSGIFLVGLVVNLI-LGFPPFYPWAMLGGALWATGNILVVPIIKT 78 (254)
T ss_pred CchhHHHHHHHhcccceeeEecc-CCCcHHHHHHHHHHHHHHHHHHHHh-cCCCcceeHHHhhhhhhhcCceeehhHhhh
Confidence 46778999999999999999863 4477666666655554444444443 344556777788899999999999999999
Q ss_pred cchhHHHHHHHHHHHHHHHHH-H--Hhc---CcC--chHHHHHHHHHHHHhheeec--CCC-------------------
Q 011986 215 SDAGRASFISMFTVIVVPLLD-G--MLG---AIV--PARTWFGAVMSILGVALLES--SGS------------------- 265 (473)
Q Consensus 215 ~~~~~asvi~~l~Pl~~~ll~-~--~l~---er~--s~~~~~g~~lal~GV~li~~--~~~------------------- 265 (473)
...+...+|-...-+++.-.. . +++ |.+ ++..++|++++++|.++... ++.
T Consensus 79 iGLglg~liW~s~n~l~Gw~~grfGlFg~~~~~~~~~~Ln~~G~~l~~~~~~~f~fik~~~~~~~~~~~~~~~~~~~~~~ 158 (254)
T PF07857_consen 79 IGLGLGMLIWGSVNCLTGWASGRFGLFGLDPQVPSSPWLNYIGVALVLVSGIIFSFIKSEEKEPKKSSEETPLSIEDVIE 158 (254)
T ss_pred hhhHHHHHHHHHHHHHHHHHHhhceeccccccccchhHHHHHHHHHHHHHHHheeeecCCCCCccccccccccccccccc
Confidence 999999888766555444433 3 343 322 34578899999998876542 100
Q ss_pred ---C------------------CCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986 266 ---P------------------PSVGDLLNFLSAVFFGIHMLRTEHISRST 295 (473)
Q Consensus 266 ---~------------------~~~G~~laL~aal~~a~~~i~~k~~~~~~ 295 (473)
. ...|..+++++++.|+...+=..++..+.
T Consensus 159 ~~~~~~~~~~~S~vd~l~~~~~RivG~~LAv~aGvlyGs~fvPv~Yi~~~~ 209 (254)
T PF07857_consen 159 IEDDSENSEDSSWVDELSPRKKRIVGIILAVFAGVLYGSNFVPVIYIQDHP 209 (254)
T ss_pred cccccccccccccccccccccchhHhHHHHHHHHHHHhcccchHHHHHhCc
Confidence 0 12689999999999999887777665543
No 93
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=96.34 E-value=0.031 Score=54.00 Aligned_cols=128 Identities=13% Similarity=0.092 Sum_probs=106.7
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhc----------CcccchhHHHHHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRAR----------DDVHTRNAGFELGL 199 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~----------~~~~~~~~~ll~g~ 199 (473)
...|+.++...-++=|......+.+.. .++++++.+.-.++.++....++...+ +.++.++..++.+.
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~~~Di~l~s~ 249 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDVAFDILLYST 249 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhHHHHHHHHHH
Confidence 346888888888888888777766644 578999999999999988888866443 34456777889999
Q ss_pred HHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986 200 WVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 200 ~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l 259 (473)
++.+|+.+.|+-++.-..-.-+.|+-+==++..+++. .+++++++.||+|+.+.+.|+.+
T Consensus 250 ~gavGQ~FI~~TI~~FGslt~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 250 CGAVGQLFIFYTIERFGSLTFTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred hhhhhhheehhhHhhcccHHHHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 9999999999999988777778888888889999998 79999999999999999998865
No 94
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=96.00 E-value=0.0028 Score=59.17 Aligned_cols=132 Identities=16% Similarity=0.057 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccchhh
Q 011986 270 GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVAFP 349 (473)
Q Consensus 270 G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 349 (473)
.++++|+=++.|+..-++..|...+ |..-.-- +.+++++.....++... +. ..++
T Consensus 3 ~~liaL~P~l~WGsip~v~~k~GG~-----p~qQ~lG-tT~GALifaiiv~~~~~----p~-----~T~~---------- 57 (288)
T COG4975 3 DLLIALLPALGWGSIPLVANKFGGK-----PYQQTLG-TTLGALIFAIIVFLFVS----PE-----LTLT---------- 57 (288)
T ss_pred hHHHHHHHHHHhcccceeeeecCCC-----hhHhhhh-ccHHHHHHHHHHheeec----Cc-----cchh----------
Confidence 5688999999999998887766543 2222222 22333333222222211 00 1111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhh-hHHHHHHHHHHHHhcCcccHhhH----HHHHHHHHHHHHHhhc
Q 011986 350 WIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYG-LEPVWGAGFAWFILGERWGATGW----LGAALVLVGSLTVQIF 424 (473)
Q Consensus 350 ~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~-l~pv~a~l~~~il~gE~~~~~~~----~G~~lIl~g~~l~~~~ 424 (473)
...+-+++++.=.++|....++++..+.+++.++.. ++-+-+.++++++|||..++.++ ++.++++.|+++..++
T Consensus 58 ~~iv~~isG~~Ws~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~ 137 (288)
T COG4975 58 IFIVGFISGAFWSFGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQ 137 (288)
T ss_pred hHHHHHHhhhHhhhhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeee
Confidence 223344444444589999999999999999988765 58888999999999999997765 4667788887777654
Q ss_pred CC
Q 011986 425 GS 426 (473)
Q Consensus 425 ~~ 426 (473)
++
T Consensus 138 ~~ 139 (288)
T COG4975 138 DR 139 (288)
T ss_pred cc
Confidence 43
No 95
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=95.52 E-value=0.035 Score=54.94 Aligned_cols=129 Identities=18% Similarity=0.116 Sum_probs=100.0
Q ss_pred chHHHHHHHHHHHHHhhHHHHHHHhhc----cCChHHHHHHHHHHHHHHHH-HHHHhhcCccc------chh----HHHH
Q 011986 132 KVRSIILLNAITVVYASNIPVIKEVEA----ITDPSAFTVVRFALSAIPFI-PFVLRARDDVH------TRN----AGFE 196 (473)
Q Consensus 132 ~~~g~ll~l~a~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~~~-~~~~~~~~~~~------~~~----~~ll 196 (473)
+..|.+.++.+.+..++..++.|.++. .+++.++..+---++.+.++ |+......... .+. ..++
T Consensus 161 n~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (316)
T KOG1441|consen 161 NLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTFLILLL 240 (316)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhhHHHHH
Confidence 467999999999999999999998863 58899999998888888888 87665433222 111 1223
Q ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986 197 LGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL 260 (473)
Q Consensus 197 ~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li 260 (473)
..++.+..+...|..+.++++-.-++....==.++...++ ++++++++.+.+|.+++++|+++=
T Consensus 241 ~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y 305 (316)
T KOG1441|consen 241 NSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLY 305 (316)
T ss_pred HHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHH
Confidence 3455566677788888888888888877766667777787 789999999999999999999863
No 96
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.49 E-value=0.026 Score=47.03 Aligned_cols=61 Identities=21% Similarity=0.251 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986 361 TGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV 421 (473)
Q Consensus 361 ~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~ 421 (473)
...+-.+|++.+++.+.+.+.++ +.+.-+++++.++++.+|..+...++|+++|++|+.++
T Consensus 51 Nq~GSv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 51 NQSGSVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 33566777789999999998888 49999999999998888888999999999999998754
No 97
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.44 E-value=0.66 Score=40.65 Aligned_cols=128 Identities=10% Similarity=0.083 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhccCC-hHHHHHHHHHHHHHHHHHHHHhhcCcc------cchhHHHHHHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEAITD-PSAFTVVRFALSAIPFIPFVLRARDDV------HTRNAGFELGLWVSLGYL 206 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~~~~-p~~~~~~R~~~a~l~~~~~~~~~~~~~------~~~~~~ll~g~~~~~~~~ 206 (473)
..++..+.+..+-.....++-.+.+..+ |+.-.+..+..+.+.+..+.+.+.+.. +..+|.+.-|+++.+..+
T Consensus 5 l~ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~~~~~~a~~~~~pwW~~~GG~lGa~~vt 84 (150)
T COG3238 5 LYLLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQGHPGLAAVASAPWWAWIGGLLGAIFVT 84 (150)
T ss_pred HHHHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhcCCCchhhccCCchHHHHccchhhhhhh
Confidence 4566677777777777777766655555 999999999998888877776643221 224455555666666656
Q ss_pred HHHHHhhccchhHHHHH-HHHHHHHHHHHHH--Hh---cCcCchHHHHHHHHHHHHhheee
Q 011986 207 MQALGLETSDAGRASFI-SMFTVIVVPLLDG--ML---GAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 207 l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~--~l---~er~s~~~~~g~~lal~GV~li~ 261 (473)
.-........++....+ ..-.-+...++.. ++ ++++++.+++|+++.++|++++-
T Consensus 85 ~s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~~ 145 (150)
T COG3238 85 SSILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLAR 145 (150)
T ss_pred hhHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHhc
Confidence 66666666666555444 3444445555554 34 57889999999999999965543
No 98
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.09 E-value=0.19 Score=47.29 Aligned_cols=66 Identities=21% Similarity=0.313 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986 194 GFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l 259 (473)
.+...+...++..+..+.+++.+....+++..+.++++.+++. +++|+++..+++|+.+.+.|+.+
T Consensus 155 ~~~~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 155 VWIVGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3445566677778888999999999999999999999999999 88999999999999999998764
No 99
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=94.92 E-value=1.2 Score=44.18 Aligned_cols=66 Identities=23% Similarity=0.328 Sum_probs=59.6
Q ss_pred HHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 362 GLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 362 ~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
.+..-+++.++.+.++++..+...+..+.+.++..+++++.++..||...++..+|+.+++.....
T Consensus 103 alqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~ 168 (345)
T KOG2234|consen 103 ALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLS 168 (345)
T ss_pred HHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCC
Confidence 355568888999999999999999999999999999999999999999999999999999954433
No 100
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=94.26 E-value=0.31 Score=45.51 Aligned_cols=126 Identities=12% Similarity=0.059 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhh----------cCcccchhHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRA----------RDDVHTRNAGFELGLWV 201 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~----------~~~~~~~~~~ll~g~~~ 201 (473)
.|-++++++-.+=|.........-. .-+.-++.+.-.+++.+.+..-++.. .+.+..+..+.++++..
T Consensus 172 ~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~~~l~l~ai~s 251 (337)
T KOG1580|consen 172 FGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYTNLWSTLYLGAGLLFTGELWEFFYFVQRHPYVFWDLTLLAIAS 251 (337)
T ss_pred hHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHHHHHHHHHhhhhheehhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 4677777777777777666544422 22345666666777776665444333 23444566677889999
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986 202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l 259 (473)
.+|..+.+.-+.+-++-.-+++..+--+|+++.+. +++..++.+||+|..+.+.|...
T Consensus 252 ~LGQ~fIF~tv~~FgPLtCSivTTTRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 252 CLGQWFIFKTVEEFGPLTCSIVTTTRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred HhhhHHHHHHHHHhCCeeEEEEeehHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 99999999999988888889999999999999999 78999999999999999988765
No 101
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=94.12 E-value=0.59 Score=46.68 Aligned_cols=135 Identities=12% Similarity=0.077 Sum_probs=92.4
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHhhc----cCChHHHHHHHHHHHHHHHHHHHHhh---cCc---cc---chhHHHHH
Q 011986 131 KKVRSIILLNAITVVYASNIPVIKEVEA----ITDPSAFTVVRFALSAIPFIPFVLRA---RDD---VH---TRNAGFEL 197 (473)
Q Consensus 131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~----~~~p~~~~~~R~~~a~l~~~~~~~~~---~~~---~~---~~~~~ll~ 197 (473)
+...|-++++++++++|...++.|.-.+ .++--.+..+--++.+++++|.++.. +.. .+ +....+..
T Consensus 244 ~~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~ 323 (416)
T KOG2765|consen 244 RPLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFN 323 (416)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHh
Confidence 3478999999999999999999987643 23433333333344444444333321 111 11 12223344
Q ss_pred HHH-HHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHh-cCcCchHHHHHHHHHHHHhheeecCCC
Q 011986 198 GLW-VSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGML-GAIVPARTWFGAVMSILGVALLESSGS 265 (473)
Q Consensus 198 g~~-~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l-~er~s~~~~~g~~lal~GV~li~~~~~ 265 (473)
++. .++..++|.+|.-.++.-.+++-..+..-..++...++ +..+++..++|.+..++|.+++.....
T Consensus 324 ~ligtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 324 NLIGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred hHHHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 444 35677999999999999999888877666677777755 788999999999999999999886543
No 102
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.01 E-value=0.023 Score=55.33 Aligned_cols=125 Identities=22% Similarity=0.273 Sum_probs=91.4
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhccc
Q 011986 266 PPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWM 345 (473)
Q Consensus 266 ~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 345 (473)
.+..|.++++.+.++.+...++.||..++... . +.. .........
T Consensus 18 d~~~G~~LaissS~~Ig~sfilkKkgl~r~~~-~-----------------------~~r---a~~gg~~yl-------- 62 (335)
T KOG2922|consen 18 DNIIGLVLAISSSIFIGSSFILKKKGLKRAGA-S-----------------------GLR---AGEGGYGYL-------- 62 (335)
T ss_pred CceeeeeehhhccEEEeeehhhhHHHHHHHhh-h-----------------------ccc---ccCCCcchh--------
Confidence 45678899999999999999888876655321 0 000 000000000
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 346 VAFPWIPALYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 346 ~~~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
-...-+.|.+..++|-.+=+.|....+++.++++..++.+...+++..+++|.++....+|+++.++|..++....
T Consensus 63 ----~~~~Ww~G~ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~iV~ha 138 (335)
T KOG2922|consen 63 ----KEPLWWAGMLTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTTIVIHA 138 (335)
T ss_pred ----hhHHHHHHHHHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEEEEEec
Confidence 0012345666677777777778888899999999999999999999999999999999999999999999888765
Q ss_pred CCCC
Q 011986 426 SSSP 429 (473)
Q Consensus 426 ~~~~ 429 (473)
+++.
T Consensus 139 P~e~ 142 (335)
T KOG2922|consen 139 PKEQ 142 (335)
T ss_pred Cccc
Confidence 5443
No 103
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=91.96 E-value=0.03 Score=54.06 Aligned_cols=120 Identities=9% Similarity=0.057 Sum_probs=76.5
Q ss_pred HHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhh----cC---c-c-----------cchhHHHHHHHH
Q 011986 140 NAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRA----RD---D-V-----------HTRNAGFELGLW 200 (473)
Q Consensus 140 l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~----~~---~-~-----------~~~~~~ll~g~~ 200 (473)
+++.++||+.....|++.+.---.+..++=+.++.++..+++... +. . + +.....++-|+.
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR~~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n~~sv~~A~aGGvv 81 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGRLPQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQANWPSVLFAMAGGVV 81 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCCccceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCChHHHHHHHHhhHh
Confidence 567899999999999986544444567888888877776666443 11 0 1 111223455777
Q ss_pred HHHHHHHHHHHhhccchhHHHHHH-HHHHHHHHHHHHHhcCcCchHHH--HHHHHHHHHhhe
Q 011986 201 VSLGYLMQALGLETSDAGRASFIS-MFTVIVVPLLDGMLGAIVPARTW--FGAVMSILGVAL 259 (473)
Q Consensus 201 ~~~~~~l~~~al~~~~~~~asvi~-~l~Pl~~~ll~~~l~er~s~~~~--~g~~lal~GV~l 259 (473)
..+++++..+|+.....+.+-++. .+.-++..++-+|+..|.++..+ .|+.+.++.+++
T Consensus 82 fnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfld~~~n~a~iLF~GV~cf~iAI~l 143 (336)
T PF07168_consen 82 FNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFLDPKINRAEILFPGVACFLIAIIL 143 (336)
T ss_pred hhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeeccCCCCCceEEEccHHHHHHHHHH
Confidence 888999999999988888776664 44444444555567777765433 244444444433
No 104
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=91.11 E-value=0.55 Score=38.08 Aligned_cols=110 Identities=15% Similarity=0.171 Sum_probs=72.6
Q ss_pred HHHHHHHHHhhHHHHHHHhhccCC----h--HHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHH
Q 011986 138 LLNAITVVYASNIPVIKEVEAITD----P--SAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALG 211 (473)
Q Consensus 138 l~l~a~~~wg~~~~~~k~~~~~~~----p--~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~a 211 (473)
-++...++||...++.|....+.+ + .-..+.|=...... .+.+.+.. ++.-.+-.+||.-
T Consensus 7 ~lvaVgllWG~Tnplirrgs~g~~~v~~~~~k~~~~lqe~~tl~l-------------~w~Y~iPF-llNqcgSaly~~t 72 (125)
T KOG4831|consen 7 KLVAVGLLWGATNPLIRRGSLGWDKVKSSSRKIMIALQEMKTLFL-------------NWEYLIPF-LLNQCGSALYYLT 72 (125)
T ss_pred HHHHHHHHHccccHHHHHHHhhHhhccCchHHHHHHHHHHHHHHH-------------hHHHHHHH-HHHHhhHHHHHHH
Confidence 456678899999999987743322 1 11111111111100 12222222 3355666789999
Q ss_pred hhccchhHHHHHH-HHHHHHHHHHHHHhcCcCchH-HHHHHHHHHHHhheee
Q 011986 212 LETSDAGRASFIS-MFTVIVVPLLDGMLGAIVPAR-TWFGAVMSILGVALLE 261 (473)
Q Consensus 212 l~~~~~~~asvi~-~l~Pl~~~ll~~~l~er~s~~-~~~g~~lal~GV~li~ 261 (473)
+++.+.+.+..+. .+.-.|+.+.+..+||+...+ .++|..+..+|+.+.+
T Consensus 73 La~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 73 LASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 9999999998885 567779999999999888755 6789999999988754
No 105
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=90.45 E-value=1.4 Score=43.81 Aligned_cols=146 Identities=16% Similarity=0.158 Sum_probs=82.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCcchhhhhcccch
Q 011986 268 SVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGGTQGSDPSSWTWTMFWDWMVA 347 (473)
Q Consensus 268 ~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 347 (473)
..|+++..+++++-+.+++=.||+.+- + .........+.+.+..|+....-..+. +.......+.
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk~W-s----WEs~Wlv~gi~swli~P~~~a~l~ip~----------~~~i~~~~~~ 70 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVKGW-S----WESYWLVQGIFSWLIVPWLWALLAIPD----------FFSIYSATPA 70 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcCCc-c----HHHHHHHHHHHHHHHHHHHHHHHhCCc----------HHHHHHhCCh
Confidence 478999999999999999999887432 2 222222223333334444332211111 0111111111
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcccChhH-HHHHhhhHHHHHHHHHHHHhc-------CcccHhhHHHHHHHHHHHH
Q 011986 348 FPWIPALYTGIFSTGLCLWIEMAAMRDVSATE-TAIIYGLEPVWGAGFAWFILG-------ERWGATGWLGAALVLVGSL 419 (473)
Q Consensus 348 ~~~~~ll~lg~~~~~~~~~l~~~al~~~~a~~-~s~l~~l~pv~a~l~~~il~g-------E~~~~~~~~G~~lIl~g~~ 419 (473)
..+....+.|++= +++-..|-.++|+++.+. .++..-+.-+++.++--++.| ++-....++|.++.++|+.
T Consensus 71 ~~l~~~~l~G~lW-GIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIa 149 (344)
T PF06379_consen 71 STLFWTFLFGVLW-GIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIA 149 (344)
T ss_pred hHHHHHHHHHHHH-hcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHH
Confidence 2233334444433 366677778899988654 344445555555555444433 2334678899999999999
Q ss_pred HHhhcCCCCC
Q 011986 420 TVQIFGSSSP 429 (473)
Q Consensus 420 l~~~~~~~~~ 429 (473)
++.+....+.
T Consensus 150 i~g~AG~~Ke 159 (344)
T PF06379_consen 150 ICGKAGSMKE 159 (344)
T ss_pred HHhHHHHhhh
Confidence 9988765544
No 106
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.91 E-value=2 Score=42.18 Aligned_cols=127 Identities=10% Similarity=-0.043 Sum_probs=93.1
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHhhcCc---------c---cchhHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLRARDD---------V---HTRNAGFELG 198 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~~~~~---------~---~~~~~~ll~g 198 (473)
..|+.+++...+.-+...+..|...+ ++.-+.+.++..+++.+.+.......+.. . ..+-...+.+
T Consensus 156 ~~gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lSc 235 (314)
T KOG1444|consen 156 LRGYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSC 235 (314)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHH
Confidence 45888888888888888888887743 67788999999999988888776544320 1 1123344556
Q ss_pred HHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhe
Q 011986 199 LWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 199 ~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~l 259 (473)
++.++-.++.+++.+..++...++.....-..+.+... +.++++++...+|+.++++|-++
T Consensus 236 v~gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~ 297 (314)
T KOG1444|consen 236 VMGFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVL 297 (314)
T ss_pred HHHHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhH
Confidence 66666678888888988888877777555555555555 56789999999999988877654
No 107
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=89.14 E-value=0.28 Score=44.50 Aligned_cols=63 Identities=19% Similarity=0.313 Sum_probs=57.4
Q ss_pred HHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 363 LCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 363 ~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
.+.++|..|+++++++.++.+..-+--|..+++++++|+++....++.+++.+.|++++.+..
T Consensus 65 ~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~D 127 (290)
T KOG4314|consen 65 GANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYAD 127 (290)
T ss_pred cCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEecc
Confidence 456678889999999999999999999999999999999999999999999999998887643
No 108
>PRK02237 hypothetical protein; Provisional
Probab=86.83 E-value=5.7 Score=32.60 Aligned_cols=45 Identities=27% Similarity=0.355 Sum_probs=38.8
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 380 TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 380 ~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.+...-.-.+.++++++.+-|++|+...++|+++.++|+.++.+.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 455566778889999999999999999999999999999887653
No 109
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=86.77 E-value=4.2 Score=39.08 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=77.1
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcC-----------cccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHH
Q 011986 160 TDPSAFTVVRFALSAIPFIPFVLRARD-----------DVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTV 228 (473)
Q Consensus 160 ~~p~~~~~~R~~~a~l~~~~~~~~~~~-----------~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~P 228 (473)
-+..+++++.+.++++++++.+...++ +.+.....++.+..+.+|......=++.-.+..++.+...-=
T Consensus 218 ~ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~~tyGy~~~~s~~gylG~~~VLalI~~fGA~~aatvTTaRK 297 (367)
T KOG1582|consen 218 ASSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPVRTYGYAFLFSLAGYLGIVFVLALIKLFGALIAATVTTARK 297 (367)
T ss_pred CCcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcHhHHHHHHHHHHHhHhhHHHHHHHHHHhchhHHHHHHHhHh
Confidence 356788888888888888877765542 223333444555555555433222234446777778887778
Q ss_pred HHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecCC-CCCCHHHH
Q 011986 229 IVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESSG-SPPSVGDL 272 (473)
Q Consensus 229 l~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~~-~~~~~G~~ 272 (473)
.+|.++++ ++.++++.....+.++.+.|+.+=..+. +...+..+
T Consensus 298 avTi~lSfllFsKPfT~qy~~~gllv~lgI~Ln~ysk~nk~~~~~~ 343 (367)
T KOG1582|consen 298 AVTILLSFLLFSKPFTEQYVWSGLLVVLGIYLNMYSKRNKIPLASL 343 (367)
T ss_pred HHHHHHHHHHHcCchHHHHhhhhHHHHHHHHhhcccCCCCCchhhH
Confidence 88999999 8899999999999999999999966654 33333333
No 110
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=85.91 E-value=7.6 Score=31.78 Aligned_cols=45 Identities=29% Similarity=0.401 Sum_probs=38.9
Q ss_pred HHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 380 TAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 380 ~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.+...-+-.+.++++++.+-|++|+...++|+.+.++|+.++.+.
T Consensus 60 YAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 60 YAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred HHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 355566778899999999999999999999999999999887654
No 111
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=84.48 E-value=1.8 Score=41.74 Aligned_cols=62 Identities=18% Similarity=0.238 Sum_probs=55.9
Q ss_pred HHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 363 LCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 363 ~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.+-.+.+.++...+|+..-++.....+|+.+++.-+++..++..+|+|+..+.+|.+++...
T Consensus 98 ~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~ 159 (372)
T KOG3912|consen 98 AGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSL 159 (372)
T ss_pred hhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeee
Confidence 55566677999999999999999999999999999999999999999999999998876654
No 112
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=83.99 E-value=4.6 Score=37.65 Aligned_cols=122 Identities=14% Similarity=0.081 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHh--hccCChHHHHHHHHHHHHHHHHHHHHhhcC-c---------ccchhHHHHHHHHH
Q 011986 134 RSIILLNAITVVYASNIPVIKEV--EAITDPSAFTVVRFALSAIPFIPFVLRARD-D---------VHTRNAGFELGLWV 201 (473)
Q Consensus 134 ~g~ll~l~a~~~wg~~~~~~k~~--~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~-~---------~~~~~~~ll~g~~~ 201 (473)
.|++++..-++.-+.....+|.- +.++.-++..++..+++.++++.+-..... . .....+.++.|++.
T Consensus 155 ~GY~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~s 234 (309)
T COG5070 155 PGYLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCS 234 (309)
T ss_pred CceEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHH
Confidence 35666555555555445555544 346778899999999999988877765431 1 11233445556655
Q ss_pred HHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHH
Q 011986 202 SLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSIL 255 (473)
Q Consensus 202 ~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~ 255 (473)
+.--++--|.++-++...-+++..+.-+-.++.+. +++|+.++..+++++++++
T Consensus 235 vgiSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGfl 289 (309)
T COG5070 235 VGISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFL 289 (309)
T ss_pred hhhhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHH
Confidence 54456667778888888888888888888888888 8899999998888876653
No 113
>PF03348 Serinc: Serine incorporator (Serinc); InterPro: IPR005016 This is a family of proteins which display differential expression in various tumour and cell lines. The function of these proteins is unknown. ; GO: 0016020 membrane
Probab=83.91 E-value=59 Score=33.94 Aligned_cols=61 Identities=16% Similarity=0.028 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcCCC
Q 011986 354 LYTGIFSTGLCLWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 354 l~lg~~~~~~~~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~~~ 427 (473)
+=.+++..-..|..|. |+...|...-+.. . .--+..-++..++|.++.++++++...+...
T Consensus 247 Lqssvv~~Y~~yL~~S-Alss~P~~~CNp~-----------~-~~~~~~~~~~~iig~i~~~~~v~yss~ra~~ 307 (429)
T PF03348_consen 247 LQSSVVSLYTTYLTWS-ALSSEPDKECNPS-----------G-SRSGSWNTWQSIIGLIFTFVSVLYSSFRASS 307 (429)
T ss_pred ccHHHHHHHHHHHHHH-HHHcCCCcccCCc-----------c-cccCCcchHHHHHHHHHHHHHHHHhcccccc
Confidence 3455555556677665 8887775444433 0 1123456688899999999998887765543
No 114
>PRK02237 hypothetical protein; Provisional
Probab=83.00 E-value=14 Score=30.37 Aligned_cols=47 Identities=21% Similarity=0.200 Sum_probs=32.4
Q ss_pred chhHHHHHH-HHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeec
Q 011986 216 DAGRASFIS-MFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 216 ~~~~asvi~-~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
..+.+-.-+ ....+...+-.+ +-|+|+++..++|..++++|+.++..
T Consensus 57 ~~GRvYAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~ 105 (109)
T PRK02237 57 AFGRVYAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMY 105 (109)
T ss_pred hhhhHHHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHhee
Confidence 344443333 344444445555 45899999999999999999988754
No 115
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=81.93 E-value=21 Score=35.06 Aligned_cols=128 Identities=15% Similarity=0.139 Sum_probs=78.7
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccC-----ChHHHHHHHHHHHHHHHHHHHHhhcCccc--------------chhH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAIT-----DPSAFTVVRFALSAIPFIPFVLRARDDVH--------------TRNA 193 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~-----~p~~~~~~R~~~a~l~~~~~~~~~~~~~~--------------~~~~ 193 (473)
..|..+...+.++=|+-+.+.+.+.++- +|+...+.-.-+..+.+++..+.-.+... .++.
T Consensus 163 i~Gf~lv~~aS~~sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fEG~~~~~~s~~f~~~d~~~~~rv 242 (349)
T KOG1443|consen 163 IEGFFLVLAASLLSGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFEGLHLITSSSIFRFQDTGLILRV 242 (349)
T ss_pred ehhHHHHHHHHHhhhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHcccccchhhhHHHhcCccHHHHH
Confidence 4699999999999999999998886433 47777766655555555555543321110 1111
Q ss_pred HHHHHHHHHHHHH---HHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986 194 GFELGLWVSLGYL---MQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL 260 (473)
Q Consensus 194 ~ll~g~~~~~~~~---l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li 260 (473)
.-.+++.+...+. .=+.=+..++.-..++..---=+.+.+++. +++++++...|+|..+++.|+.+=
T Consensus 243 ~g~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 243 IGLISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 1112222222222 222223444444444444444566777887 789999999999999999999875
No 116
>PF02694 UPF0060: Uncharacterised BCR, YnfA/UPF0060 family; InterPro: IPR003844 This entry describes integral membrane proteins of unknown function.; GO: 0016020 membrane
Probab=79.69 E-value=18 Score=29.64 Aligned_cols=53 Identities=21% Similarity=0.295 Sum_probs=36.1
Q ss_pred HhhccchhHHHHHH-HHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 211 GLETSDAGRASFIS-MFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 211 al~~~~~~~asvi~-~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
.++-.+.+.+-.-+ ....+...+-.+ +-|+|+++..++|..++++|+.++...
T Consensus 50 Tl~p~~fGRvYAAYGGvfI~~Sl~W~w~vdg~~Pd~~D~iGa~i~L~G~~iI~~~ 104 (107)
T PF02694_consen 50 TLQPAAFGRVYAAYGGVFIVASLLWGWLVDGVRPDRWDWIGAAICLVGVAIILFA 104 (107)
T ss_pred hcCcccchhHHHHhhhhHHHHHHHHHhhhcCcCCChHHHHhHHHHHHhHHheEec
Confidence 34444445543333 344444555555 458999999999999999999988753
No 117
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=75.85 E-value=90 Score=32.83 Aligned_cols=40 Identities=13% Similarity=0.052 Sum_probs=21.5
Q ss_pred hHHHHHHHHHHH-HhcCcccHhhHHHHHHHHHHHHHHhhcCC
Q 011986 386 LEPVWGAGFAWF-ILGERWGATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 386 l~pv~a~l~~~i-l~gE~~~~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
.-++++.++..+ .+...+ ...+.|.+++++|..++.+.++
T Consensus 397 ~~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~y~~~~~ 437 (473)
T TIGR00905 397 IVGVIACVYSIWLLYAAGL-KYLLLGFILYAPGIIFYGRARK 437 (473)
T ss_pred HHHHHHHHHHHHHHHHhhH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 334444443333 333322 3455688888888766665443
No 118
>TIGR02865 spore_II_E stage II sporulation protein E. Stage II sporulation protein E (SpoIIE) is a multiple membrane spanning protein with two separable functions. It plays a role in the switch to polar cell division during sporulation. By means of it protein phosphatase activity, located in the C-terminal region, it activates sigma-F. All proteins that score above the trusted cutoff to this model are found in endospore-forming Gram-positive bacteria. Surprisingly, a sequence from the Cyanobacterium-like (and presumably non-spore-forming) photosynthesizer Heliobacillus mobilis is homologous, and scores between the trusted and noise cutoffs.
Probab=75.52 E-value=46 Score=37.51 Aligned_cols=44 Identities=23% Similarity=0.381 Sum_probs=30.0
Q ss_pred hhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhhee
Q 011986 217 AGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALL 260 (473)
Q Consensus 217 ~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li 260 (473)
++.+.++..+.|.-.+.++. .+.+|.+...+++.+-.++|.+.+
T Consensus 10 lgRa~il~~l~PFg~af~~a~~~~~~~~~~~~~~~~~~~~G~~t~ 54 (764)
T TIGR02865 10 LGRAVIVSPMAPFGIAFLAAVLLAKKGGDKAFFSALGVLLGAISI 54 (764)
T ss_pred HhHHHHhcCCCchHHHHHHHHHHhhcccchHHHHHHHHHHHHHHh
Confidence 36778888899998888888 445554344455666666676654
No 119
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=74.21 E-value=16 Score=29.88 Aligned_cols=50 Identities=22% Similarity=0.126 Sum_probs=34.2
Q ss_pred hcccChhHHHHHhhhHH-HHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986 372 MRDVSATETAIIYGLEP-VWGAGFAWFILGERWGATGWLGAALVLVGSLTV 421 (473)
Q Consensus 372 l~~~~a~~~s~l~~l~p-v~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~ 421 (473)
.+..++.+.-+++-..- .+=..++.+++||++++..+.|.+++++++..+
T Consensus 56 ~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fi 106 (108)
T PF04342_consen 56 YQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFI 106 (108)
T ss_pred ccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhhee
Confidence 33444555555544322 233456788899999999999999999887653
No 120
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=72.89 E-value=5.5 Score=34.44 Aligned_cols=46 Identities=15% Similarity=0.202 Sum_probs=33.4
Q ss_pred HhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHH
Q 011986 211 GLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILG 256 (473)
Q Consensus 211 al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~G 256 (473)
++..-++-.++++.|+.|+++.+++.++-+++...+.+.++.+++|
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~~L~~~e~~~~~~~~lg 113 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQYLFFSELIVIFGAFLG 113 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 3444566778999999999999999877666666666655544444
No 121
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=72.73 E-value=40 Score=31.25 Aligned_cols=81 Identities=2% Similarity=-0.088 Sum_probs=32.0
Q ss_pred HHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhc----CcccchhHHHHHHHHHHHHHHHHHHHhh
Q 011986 138 LLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRAR----DDVHTRNAGFELGLWVSLGYLMQALGLE 213 (473)
Q Consensus 138 l~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~----~~~~~~~~~ll~g~~~~~~~~l~~~al~ 213 (473)
+..+.+++.|.+..+.+...+..+-..++..-.+.+.++...+-+..+ .+++.+...++.++...+.++..+....
T Consensus 89 ~~~if~~~~gi~~~f~~~~~~~~gi~tli~~~i~~G~~~~~~~~~i~~~~~~~~r~~~~k~~~~~~~~~~~w~~~~~~~~ 168 (206)
T PF06570_consen 89 FFGIFSLLFGIMGFFSPKNSNQYGIITLILVSIVGGLVFYFIFKYIYPYKKKKKRPSWWKYILISVLAMVLWIVIFVLTS 168 (206)
T ss_pred HHHHHHHHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555544443222233344333333333333333322222 1222233334444444445544444444
Q ss_pred ccchh
Q 011986 214 TSDAG 218 (473)
Q Consensus 214 ~~~~~ 218 (473)
..+..
T Consensus 169 ~lp~~ 173 (206)
T PF06570_consen 169 FLPPV 173 (206)
T ss_pred Hcccc
Confidence 44443
No 122
>PF07168 Ureide_permease: Ureide permease; InterPro: IPR009834 This entry represents ureide permease, which transports a wide spectrum of oxo derivatives of heterocyclic nitrogen compounds, including allantoin, uric acid and xanthine, but not adenine. Transport is dependent on glucose and a proton gradient [].
Probab=72.06 E-value=1 Score=43.79 Aligned_cols=144 Identities=16% Similarity=0.117 Sum_probs=73.0
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHH-HHhccCCCCCCCCCCCcchhhhhcccchhhHHHH
Q 011986 275 FLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWY-FIGGSLGGTQGSDPSSWTWTMFWDWMVAFPWIPA 353 (473)
Q Consensus 275 L~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 353 (473)
+++.+||+-.-...|-..|+-. . ...+++-..++.++..++. +-.+..+......+..+.--..-+ .. -+..
T Consensus 2 ~itmlcwGSW~nt~kL~~r~gR-~--~qh~Y~DYsig~lL~All~A~TlGs~G~~~~~g~~Fl~qL~Q~n---~~-sv~~ 74 (336)
T PF07168_consen 2 VITMLCWGSWPNTQKLAERRGR-L--PQHFYWDYSIGNLLAALLIAFTLGSIGESTPEGPNFLTQLSQAN---WP-SVLF 74 (336)
T ss_pred eeehhhhcChHHHHHHHHhcCC-c--cceehhHHHHHHHHHHHHHHHhccccCCCCCCCccHHHHHhcCC---hH-HHHH
Confidence 3556777777777665544322 1 1123444444444444433 333333221111111111000011 11 2334
Q ss_pred HHHHHHHHHHHHHHHHHHhcccChhHHHHHh-hhHHHHHHHHHHHHhcCccc--HhhHHHHHHHHHHHHHHhhcCC
Q 011986 354 LYTGIFSTGLCLWIEMAAMRDVSATETAIIY-GLEPVWGAGFAWFILGERWG--ATGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 354 l~lg~~~~~~~~~l~~~al~~~~a~~~s~l~-~l~pv~a~l~~~il~gE~~~--~~~~~G~~lIl~g~~l~~~~~~ 426 (473)
..+|++..-++.++..+++...+.+.+-++. .+..+.+.++.|++ ..+.+ ..-+.|.+++++++++-....+
T Consensus 75 A~aGGvvfnlgNillq~aia~aGmSVafpvg~glalVlGv~~NYfl-d~~~n~a~iLF~GV~cf~iAI~lga~ah~ 149 (336)
T PF07168_consen 75 AMAGGVVFNLGNILLQAAIAFAGMSVAFPVGIGLALVLGVTLNYFL-DPKINRAEILFPGVACFLIAIILGAAAHK 149 (336)
T ss_pred HHHhhHhhhhHHHHHHHHHHHhcceeeeeeecceEEEEeeeeeeec-cCCCCCceEEEccHHHHHHHHHHHHHHHh
Confidence 5566666668888888888887765544433 33445566666643 34444 3455688888888877655443
No 123
>PRK09776 putative diguanylate cyclase; Provisional
Probab=70.93 E-value=1.2e+02 Score=35.37 Aligned_cols=16 Identities=0% Similarity=-0.002 Sum_probs=8.9
Q ss_pred HHHHHHHHHHHHHHHh
Q 011986 223 ISMFTVIVVPLLDGML 238 (473)
Q Consensus 223 i~~l~Pl~~~ll~~~l 238 (473)
+...+|.-.+.++.++
T Consensus 24 ~~~iW~~~g~~~~~ll 39 (1092)
T PRK09776 24 LAPLWFPTAIMMVAFY 39 (1092)
T ss_pred cccccccHHHHHHHHH
Confidence 3445666666666643
No 124
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=70.15 E-value=3.4 Score=39.76 Aligned_cols=53 Identities=15% Similarity=0.079 Sum_probs=44.8
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHhhc
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEAITD--PSAFTVVRFALSAIPFIPFVLRAR 185 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~~~~--p~~~~~~R~~~a~l~~~~~~~~~~ 185 (473)
..|+++.+++.+.-+++.+..|..+...+ -+.+.++..+.+.+++++.+...+
T Consensus 184 ~~GvifGVlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lng 238 (347)
T KOG1442|consen 184 WIGVIFGVLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNG 238 (347)
T ss_pred hhhhHHHHHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcc
Confidence 46999999999999999999997654333 678899999999999999988765
No 125
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=67.93 E-value=86 Score=29.02 Aligned_cols=15 Identities=13% Similarity=0.346 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHH
Q 011986 352 PALYTGIFSTGLCLW 366 (473)
Q Consensus 352 ~ll~lg~~~~~~~~~ 366 (473)
..+++|++..++-++
T Consensus 182 ~~iiig~i~~~~~~~ 196 (206)
T PF06570_consen 182 VYIIIGVIAFALRFY 196 (206)
T ss_pred HHHHHHHHHHHHHHH
Confidence 345666665544443
No 126
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=67.48 E-value=48 Score=27.09 Aligned_cols=26 Identities=27% Similarity=0.459 Sum_probs=23.2
Q ss_pred hcCcCchHHHHHHHHHHHHhheeecC
Q 011986 238 LGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 238 l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
=|.|+++..++|..++++|+.++..+
T Consensus 80 dg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 80 DGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred cCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 48999999999999999999888764
No 127
>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype. Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.
Probab=66.63 E-value=1.4e+02 Score=30.97 Aligned_cols=65 Identities=12% Similarity=0.179 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHHH--HHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHH
Q 011986 354 LYTGIFSTGLCLWIEM--AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGS 418 (473)
Q Consensus 354 l~lg~~~~~~~~~l~~--~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~ 418 (473)
+.+|+++..+.+.... .-++--++..+-.+-...=+++.+..-++-++..-..|++|++.+++=.
T Consensus 297 ~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~~~ 363 (404)
T TIGR03644 297 TLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAWV 363 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 4455555544444332 1233345554444444444455544433333333456888877665543
No 128
>COG1742 Uncharacterized conserved protein [Function unknown]
Probab=65.96 E-value=23 Score=28.88 Aligned_cols=44 Identities=25% Similarity=0.388 Sum_probs=36.6
Q ss_pred HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 381 AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 381 s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
+...-+-.+.++++.+++-|..|+...++|.++-++|+.++...
T Consensus 62 AAYGGvyI~~sL~W~~~Vdg~~pdr~D~~Ga~icl~G~~vil~~ 105 (109)
T COG1742 62 AAYGGVYIAASLAWLWVVDGVRPDRYDWIGAAICLAGVAVILFG 105 (109)
T ss_pred HHhcchHHHHHHHHHHHHcCcCCcHHHhhhHHHHHhceeeeEeC
Confidence 44455667888999999999999999999999999997766553
No 129
>COG2245 Predicted membrane protein [Function unknown]
Probab=64.50 E-value=1e+02 Score=27.62 Aligned_cols=29 Identities=17% Similarity=0.144 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHHHHhhhhhcCCCCCchhH
Q 011986 275 FLSAVFFGIHMLRTEHISRSTNKKDFLPL 303 (473)
Q Consensus 275 L~aal~~a~~~i~~k~~~~~~~~~~~~~~ 303 (473)
+++-+++-+..+-.+.+++...+...+..
T Consensus 29 ilSlVG~VLvlval~~iS~~~ge~~IF~~ 57 (182)
T COG2245 29 ILSLVGLVLVLVALYMISKQVGEDRIFNN 57 (182)
T ss_pred HHHHHHHHHHHHHHHHHHHHhChHHHHHH
Confidence 55555565666655655555443333333
No 130
>COG3086 RseC Positive regulator of sigma E activity [Signal transduction mechanisms]
Probab=62.45 E-value=12 Score=32.39 Aligned_cols=30 Identities=13% Similarity=0.181 Sum_probs=24.4
Q ss_pred HhcccChhHHHHHhhhHHHHHHHHHHHHhc
Q 011986 371 AMRDVSATETAIIYGLEPVWGAGFAWFILG 400 (473)
Q Consensus 371 al~~~~a~~~s~l~~l~pv~a~l~~~il~g 400 (473)
++..-+....+.+.|+.|+++++++.++++
T Consensus 68 Gi~EkslL~sA~LvYi~PL~~l~v~~~La~ 97 (150)
T COG3086 68 GIEEKSLLKSALLVYIFPLVGLFLGAILAQ 97 (150)
T ss_pred ccCcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667789999999999999998877643
No 131
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=62.05 E-value=8.7 Score=33.02 Aligned_cols=42 Identities=14% Similarity=0.290 Sum_probs=28.4
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHH
Q 011986 214 TSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSIL 255 (473)
Q Consensus 214 ~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~ 255 (473)
......++++.|+.|++..+++.+++..+...++.+++.+++
T Consensus 64 ~~~~~~aa~l~Y~lPll~li~g~~l~~~~~~~e~~~~l~~l~ 105 (135)
T PF04246_consen 64 ESSLLKAAFLVYLLPLLALIAGAVLGSYLGGSELWAILGGLL 105 (135)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567889999999999998886665555445444444433
No 132
>PLN00028 nitrate transmembrane transporter; Provisional
Probab=58.65 E-value=2.2e+02 Score=29.82 Aligned_cols=16 Identities=13% Similarity=0.185 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHhh
Q 011986 408 WLGAALVLVGSLTVQI 423 (473)
Q Consensus 408 ~~G~~lIl~g~~l~~~ 423 (473)
+.|+.+++++++....
T Consensus 417 ~~~~~~~i~~~~~~~~ 432 (476)
T PLN00028 417 LMGVMIIACTLPVAFI 432 (476)
T ss_pred HHHHHHHHHHHHHHhe
Confidence 3455555554444433
No 133
>COG4657 RnfA Predicted NADH:ubiquinone oxidoreductase, subunit RnfA [Energy production and conversion]
Probab=58.46 E-value=1.3e+02 Score=26.67 Aligned_cols=81 Identities=19% Similarity=0.182 Sum_probs=52.4
Q ss_pred cCcCchHHHHHHHH-------HHHHhheeecC-CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCC---CchhHHHHH
Q 011986 239 GAIVPARTWFGAVM-------SILGVALLESS-GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKK---DFLPLLGYE 307 (473)
Q Consensus 239 ~er~s~~~~~g~~l-------al~GV~li~~~-~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~---~~~~~~~~~ 307 (473)
|..++..+.+|+.+ +..|++++... +..+.-....++.++++|++..++...+++|.+-. .++....+.
T Consensus 94 KtsP~LYr~LGIfLPLITTNCaVLgvaLln~~~~~~f~qsv~~gf~a~lGfslvmvlfA~iRER~~~advP~~frG~~ia 173 (193)
T COG4657 94 KTSPTLYRLLGIFLPLITTNCAVLGVALLNINEGHNFLQSVVYGFGAALGFSLVMVLFAAIRERLALADVPAPFRGAAIA 173 (193)
T ss_pred ccCHHHHHHHHHhhhhHhhchHHHHHHHHHhhhhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHhcCCCCCCCcchH
Confidence 44555667777664 66788887754 45667788999999999999998877666543221 234444444
Q ss_pred HHHHHHHHHHHH
Q 011986 308 VCVIALLSAVWY 319 (473)
Q Consensus 308 ~l~~~~~~~~~~ 319 (473)
.+..+++.+.++
T Consensus 174 litagLmSlaFm 185 (193)
T COG4657 174 LITAGLMSLAFM 185 (193)
T ss_pred HHHHHHHHHHHc
Confidence 455555555544
No 134
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=57.74 E-value=3.4 Score=39.72 Aligned_cols=60 Identities=10% Similarity=0.151 Sum_probs=0.0
Q ss_pred hccchhHHHHHHHHHHHHHHHHHH--HhcCcCc-hHHHHHHHHHHHHhheee---cCCCCCCHHHH
Q 011986 213 ETSDAGRASFISMFTVIVVPLLDG--MLGAIVP-ARTWFGAVMSILGVALLE---SSGSPPSVGDL 272 (473)
Q Consensus 213 ~~~~~~~asvi~~l~Pl~~~ll~~--~l~er~s-~~~~~g~~lal~GV~li~---~~~~~~~~G~~ 272 (473)
.-.+-+..+++++...+.++++-. +||+|+- +...+++++.++-+++.. ..+.....|.+
T Consensus 45 sd~t~~a~~vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~ 110 (381)
T PF05297_consen 45 SDLTQGALTVLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIV 110 (381)
T ss_dssp ------------------------------------------------------------------
T ss_pred hccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHH
Confidence 334445555665555444444433 5676653 445566665555444332 23444445544
No 135
>PF08507 COPI_assoc: COPI associated protein; InterPro: IPR013714 Proteins in this family co-localise with COPI vesicle coat proteins []. In yeast it is a Golgi membrane protein involved in vesicular trafficking, interacting with TVP18 [].
Probab=57.01 E-value=14 Score=31.89 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=16.4
Q ss_pred HHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 392 ~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
+++|.+.+++ --...++|..+++.|++.+..
T Consensus 75 if~G~l~~~~-~~~~~i~g~~~~~~G~~~i~l 105 (136)
T PF08507_consen 75 IFLGTLCLGQ-SILSIIIGLLLFLVGVIYIIL 105 (136)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444 223445577777777665443
No 136
>PF03547 Mem_trans: Membrane transport protein; InterPro: IPR004776 This entry represents a mostly uncharacterised family of membrane transport proteins found in eukaryotes, bacteria and archaea. Most characterised members of this family are the PIN components of auxin efflux systems from plants. These carriers are saturable, auxin-specific, and localized to the basal ends of auxin transport-competent cells [, ]. Plants typically posses several of these proteins, each displaying a unique tissue-specific expression pattern. They are expressed in almost all plant tissues including vascular tissues and roots, and influence many processes including the establishment of embryonic polarity, plant growth, apical hook formation in seedlings and the photo- and gravitrophic responses. These plant proteins are typically 600-700 amino acyl residues long and exhibit 8-12 transmembrane segments.; GO: 0055085 transmembrane transport, 0016021 integral to membrane
Probab=56.95 E-value=1.7e+02 Score=29.57 Aligned_cols=14 Identities=14% Similarity=-0.166 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHHH
Q 011986 353 ALYTGIFSTGLCLW 366 (473)
Q Consensus 353 ll~lg~~~~~~~~~ 366 (473)
+...+++..++++.
T Consensus 65 ~~~~~~~~~~~~~~ 78 (385)
T PF03547_consen 65 IPVFAFIIFILGLL 78 (385)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333434433
No 137
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=55.76 E-value=16 Score=34.92 Aligned_cols=131 Identities=16% Similarity=0.055 Sum_probs=82.3
Q ss_pred cchHHHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHH----HH--HHHHHHH
Q 011986 131 KKVRSIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGF----EL--GLWVSLG 204 (473)
Q Consensus 131 ~~~~g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~l----l~--g~~~~~~ 204 (473)
++.+|=.+++.++.+++.+++.-..+....+-.++...--+++.++..+=+...+.+.....|-. .+ ++.++..
T Consensus 163 np~~GD~lvi~GATlYaVSNv~EEflvkn~d~~elm~~lgLfGaIIsaIQ~i~~~~~~~tl~w~~~i~~yl~f~L~MFll 242 (336)
T KOG2766|consen 163 NPVKGDFLVIAGATLYAVSNVSEEFLVKNADRVELMGFLGLFGAIISAIQFIFERHHVSTLHWDSAIFLYLRFALTMFLL 242 (336)
T ss_pred CCccCcEEEEecceeeeeccccHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhhccceeeEeehHHHHHHHHHHHHHHHH
Confidence 34567788999999999999998888888999999888888888887776666655554333211 11 1112222
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeec
Q 011986 205 YLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLES 262 (473)
Q Consensus 205 ~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~ 262 (473)
+.+.=.=++..++....+-.-++-++..++ +.+|-++.|.-.++......|.++-..
T Consensus 243 Ysl~pil~k~~~aT~~nlslLTsDmwsl~i-~~FgYhv~wLY~laF~~i~~GliiYs~ 299 (336)
T KOG2766|consen 243 YSLAPILIKTNSATMFNLSLLTSDMWSLLI-RTFGYHVDWLYFLAFATIATGLIIYST 299 (336)
T ss_pred HHhhHHheecCCceEEEhhHhHHHHHHHHH-HHHhcchhhhhHHHHHHHHHhhEEeec
Confidence 222222223333332222222233444444 566777999999999999999887643
No 138
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=55.58 E-value=13 Score=32.80 Aligned_cols=28 Identities=18% Similarity=0.194 Sum_probs=21.1
Q ss_pred hhccchhHHHHHHHHHHHHHHHHHHHhc
Q 011986 212 LETSDAGRASFISMFTVIVVPLLDGMLG 239 (473)
Q Consensus 212 l~~~~~~~asvi~~l~Pl~~~ll~~~l~ 239 (473)
+....+..++++.|+.|++..+++.+++
T Consensus 69 i~e~~llkaa~lvYllPLl~li~ga~l~ 96 (154)
T PRK10862 69 IAEGSLLRSALLVYMTPLVGLFLGAALF 96 (154)
T ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445566788999999999998876543
No 139
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=54.41 E-value=3.7e+02 Score=30.52 Aligned_cols=77 Identities=8% Similarity=0.045 Sum_probs=40.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcCc
Q 011986 162 PSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAI 241 (473)
Q Consensus 162 p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er 241 (473)
-..+..+|+.++.+.+..++.+.+++... ...++.|++..++-+..++.... .-.++ ...-|++...+..+++||
T Consensus 92 ~~~~~~lk~~lag~~~~~~l~~~~~~~~~-~~~~i~s~~Yafsg~~~~~~~~~-~fld~---~i~lPL~llgie~~~~~~ 166 (843)
T PF09586_consen 92 ILLLIILKIGLAGLFFYLYLRKFKKSRSD-WAALIGSLLYAFSGYVIYYSFNI-MFLDA---MILLPLLLLGIERLLKEK 166 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCccc-HHHHHHHHHHHHHHHHHHHhhhH-HHHHH---HHHHHHHHHHHHHHHhcC
Confidence 34557788888888888777655544322 33344555544332222222221 11222 233476666666666665
Q ss_pred Cc
Q 011986 242 VP 243 (473)
Q Consensus 242 ~s 243 (473)
=.
T Consensus 167 k~ 168 (843)
T PF09586_consen 167 KW 168 (843)
T ss_pred Cc
Confidence 33
No 140
>COG3169 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=53.68 E-value=34 Score=27.58 Aligned_cols=31 Identities=19% Similarity=0.092 Sum_probs=26.9
Q ss_pred HHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 392 ~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
+.++.+.++|++.+..+.|..+|++|+.++.
T Consensus 84 v~Fsvfyl~epl~~~~l~a~~~i~gav~fiF 114 (116)
T COG3169 84 VPFSVFYLKEPLRWNYLWAFLLILGAVYFIF 114 (116)
T ss_pred HHHHHHHHcCcchHHHHHHHHHHHHHHHHhc
Confidence 3468888999999999999999999987764
No 141
>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily. EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].
Probab=52.82 E-value=3.2e+02 Score=29.30 Aligned_cols=42 Identities=12% Similarity=0.116 Sum_probs=18.0
Q ss_pred HHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhh
Q 011986 382 IIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 382 ~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
......|+-++++|.+.-.-.......+++++++++.++...
T Consensus 351 ~~~g~~~lGsll~G~la~~~g~~~al~~a~~~lll~~~~~~~ 392 (524)
T PF05977_consen 351 VFFGGMPLGSLLWGFLADHFGVRTALLIAGAALLLSALIALR 392 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666666665432222222333333444444444433
No 142
>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]
Probab=52.69 E-value=2.1e+02 Score=29.79 Aligned_cols=49 Identities=16% Similarity=0.168 Sum_probs=29.4
Q ss_pred HHHHhhhHHHHHHHHHHHHhcC-cccHhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 380 TAIIYGLEPVWGAGFAWFILGE-RWGATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 380 ~s~l~~l~pv~a~l~~~il~gE-~~~~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
.++-..+-|+++.+ +++.++- .-.....-|++.+++|+++..+.+.+..
T Consensus 162 hNiGGal~~~~~~l-a~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq 211 (448)
T COG2271 162 HNIGGALAPLVALL-AFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ 211 (448)
T ss_pred hhcccchHHHHHHH-HHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 34444555555554 6555543 3334445688888888888777665544
No 143
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=50.92 E-value=11 Score=30.85 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.5
Q ss_pred HHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 366 WIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 366 ~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
.+|+.-+++.+-+.+..+ +.+...|+.++|..+-.|...-..++|..+++.|+.++.
T Consensus 67 aly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lci 124 (125)
T KOG4831|consen 67 ALYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLCI 124 (125)
T ss_pred HHHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhee
Confidence 345556677766555443 456778999999876556677888999999999988764
No 144
>PRK08238 hypothetical protein; Validated
Probab=48.75 E-value=2.8e+02 Score=29.47 Aligned_cols=18 Identities=6% Similarity=0.303 Sum_probs=12.1
Q ss_pred CchHHHHHHHHHHHHhhe
Q 011986 242 VPARTWFGAVMSILGVAL 259 (473)
Q Consensus 242 ~s~~~~~g~~lal~GV~l 259 (473)
+.+.+|+..++.++|.++
T Consensus 198 ~Rp~q~~kn~l~~~p~l~ 215 (479)
T PRK08238 198 LRVHQWAKNLLVFVPLLA 215 (479)
T ss_pred hCCcHHHHHHHHHHHHHH
Confidence 345577777777777764
No 145
>PF04246 RseC_MucC: Positive regulator of sigma(E), RseC/MucC; InterPro: IPR007359 This bacterial family of integral membrane proteins represents a positive regulator of the sigma(E) transcription factor, namely RseC/MucC. The sigma(E) transcription factor is up-regulated by cell envelope protein misfolding, and regulates the expression of genes that are collectively termed ECF (devoted to Extra-Cellular Functions) []. In Pseudomonas aeruginosa, derepression of sigma(E) is associated with the alginate-overproducing phenotype characteristic of chronic respiratory tract colonization in cystic fibrosis patients. The mechanism by which RseC/MucC positively regulates the sigma(E) transcription factor is unknown. RseC is also thought to have a role in thiamine biosynthesis in Salmonella typhimurium []. In addition, this family also includes an N-terminal part of RnfF, a Rhodobacter capsulatus protein, of unknown function, that is essential for nitrogen fixation. This protein also contains a domain found in ApbE protein IPR003374 from INTERPRO, which is itself involved in thiamine biosynthesis.
Probab=48.63 E-value=28 Score=29.83 Aligned_cols=27 Identities=15% Similarity=0.102 Sum_probs=21.2
Q ss_pred hcccChhHHHHHhhhHHHHHHHHHHHH
Q 011986 372 MRDVSATETAIIYGLEPVWGAGFAWFI 398 (473)
Q Consensus 372 l~~~~a~~~s~l~~l~pv~a~l~~~il 398 (473)
+..-....++.+.|+-|++.++.+.++
T Consensus 62 i~~~~~~~aa~l~Y~lPll~li~g~~l 88 (135)
T PF04246_consen 62 IPESSLLKAAFLVYLLPLLALIAGAVL 88 (135)
T ss_pred eccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 444456678899999999999988765
No 146
>COG2917 Intracellular septation protein A [Cell division and chromosome partitioning]
Probab=47.29 E-value=1.8e+02 Score=26.14 Aligned_cols=78 Identities=9% Similarity=0.026 Sum_probs=44.7
Q ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHH-HHHHHHhheeecCCCCCC---HHHHHHHHHHHH
Q 011986 205 YLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGA-VMSILGVALLESSGSPPS---VGDLLNFLSAVF 280 (473)
Q Consensus 205 ~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~-~lal~GV~li~~~~~~~~---~G~~laL~aal~ 280 (473)
..+++.+++..+.-.|+...-...+....+.++..+++...+++.. .+.+.|.+-+..+++.+. ..++..+.+.+.
T Consensus 10 li~FF~~yk~~~I~~AT~~livAt~i~l~~~w~~~rkv~km~l~s~~~v~vFG~lTl~f~~d~FIKwK~TIi~~lFa~~L 89 (180)
T COG2917 10 LILFFAAYKVYGIYAATAVLIVATVIQLAILWIKYRKVEKMQLISGVVVVVFGGLTLIFHNDTFIKWKPTIIYWLFALVL 89 (180)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhchhHhhccCcceEEeeHHHHHHHHHHHH
Confidence 3444445555455555555545555566666677788888887644 455577776666666543 234444444444
Q ss_pred HH
Q 011986 281 FG 282 (473)
Q Consensus 281 ~a 282 (473)
.+
T Consensus 90 lg 91 (180)
T COG2917 90 LG 91 (180)
T ss_pred HH
Confidence 44
No 147
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.74 E-value=1.1e+02 Score=30.85 Aligned_cols=34 Identities=15% Similarity=0.212 Sum_probs=17.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHH
Q 011986 191 RNAGFELGLWVSLGYLMQALGLETSDAGRASFIS 224 (473)
Q Consensus 191 ~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~ 224 (473)
+..-++.-.+-.++..+.|.+.++..++.|.+|.
T Consensus 251 RS~~ilmWtLqli~lvl~Yfsvq~p~~a~A~iI~ 284 (452)
T KOG3817|consen 251 RSQTILMWTLQLIGLVLAYFSVQHPSAAIAAIIM 284 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 3333444444455555566666666655554443
No 148
>PF09605 Trep_Strep: Hypothetical bacterial integral membrane protein (Trep_Strep); InterPro: IPR011733 This family consists of strongly hydrophobic proteins about 190 amino acids in length with a strongly basic motif near the C terminus. If is found in rather few species, but in paralogous families of 12 members in the oral pathogenic spirochaete Treponema denticola and 2 in Streptococcus pneumoniae (strain ATCC BAA-255 / R6).
Probab=43.89 E-value=2.5e+02 Score=25.50 Aligned_cols=70 Identities=17% Similarity=0.273 Sum_probs=40.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH----HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 192 NAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG----MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 192 ~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~----~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
+..+..|++..+.+..+.....-... .-......|.+.++++- ++-.|.+++-.+.+.-.+.|+++...+
T Consensus 3 KDlI~igif~al~~vv~~v~~~~~~~--~p~~~~~~~~i~ali~g~vyml~~~KV~K~G~~~i~~~i~gl~~~~~G 76 (186)
T PF09605_consen 3 KDLITIGIFTALYFVVMFVVGMIGGF--SPIFMLFMPAIAALICGIVYMLMVAKVPKRGAFLIMGIIMGLIFFLMG 76 (186)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh--hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHHh
Confidence 44556666666666554443322111 12223556666666543 357788888877777777888765553
No 149
>PF09852 DUF2079: Predicted membrane protein (DUF2079); InterPro: IPR018650 This entry is represented by Sulfolobus virus STSV1, Orf64. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry contains a family of various integral membrane proteins with no known function.
Probab=43.66 E-value=2.7e+02 Score=29.13 Aligned_cols=119 Identities=17% Similarity=0.140 Sum_probs=59.9
Q ss_pred ChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcC
Q 011986 161 DPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGA 240 (473)
Q Consensus 161 ~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~e 240 (473)
+|..+..++.++-.+..+++.+.-++.....+..+..++...++...+ .....+-....+..|++...+-.+.++
T Consensus 58 s~~tLli~Qal~la~~~~pl~~lar~~~~~~~~a~~~~~~ylL~p~~~-----~~~~~dFH~~~~avPll~~~~~~~~~~ 132 (449)
T PF09852_consen 58 SPLTLLIVQALLLALGAIPLYRLARRRLLSRRLALLIALAYLLSPGLQ-----GANLFDFHPVAFAVPLLLWALYALERR 132 (449)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhHHHH-----hhhhCCCcHHHHHHHHHHHHHHHHHhC
Confidence 467777777766666666555444333333444445555444444333 223334444555556655544444444
Q ss_pred cCch-----------HHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHHHHH
Q 011986 241 IVPA-----------RTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHM 285 (473)
Q Consensus 241 r~s~-----------~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a~~~ 285 (473)
|... ++-.++.++.+|+.++... .....|..+++.+.+-+.+..
T Consensus 133 r~~~~~~~~ll~llvKEd~~l~v~~~gl~~~~~~-r~~r~g~~~~~~~~~~~~l~~ 187 (449)
T PF09852_consen 133 RWRLFILWALLLLLVKEDLGLTVAGIGLYLLLRR-RKRRWGLALAVFGVAWFILAT 187 (449)
T ss_pred cHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHHHHHH
Confidence 4332 2334555555666655554 122345555555555444444
No 150
>PRK06638 NADH:ubiquinone oxidoreductase subunit J; Provisional
Probab=41.94 E-value=2.8e+02 Score=25.50 Aligned_cols=33 Identities=3% Similarity=-0.023 Sum_probs=21.1
Q ss_pred HHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 392 AGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 392 ~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
-.+|..++++-.=+...+|.++.++=+-.+.+.
T Consensus 133 ~~iG~~L~t~y~l~fe~~silLLvAmIGAI~La 165 (198)
T PRK06638 133 KAIGILLFTDYLLPFELASVLLLVAMVGAIVLA 165 (198)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345777778877788888877765544333333
No 151
>PRK01061 Na(+)-translocating NADH-quinone reductase subunit E; Provisional
Probab=41.82 E-value=3.2e+02 Score=26.10 Aligned_cols=72 Identities=15% Similarity=0.146 Sum_probs=41.4
Q ss_pred HHHHHhheeec-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCC---chhHHHHHHHHHHHHHHHHHHHhc
Q 011986 252 MSILGVALLES-SGSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKD---FLPLLGYEVCVIALLSAVWYFIGG 323 (473)
Q Consensus 252 lal~GV~li~~-~~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~ 323 (473)
.+++|..+... .+..+......++.++++|.+..++..-++++....+ .+......++..+++.+.+..+.|
T Consensus 133 CaVLG~al~~~~~~~~~~~S~~~Glg~GlGftLALvl~a~iRErL~~~~iP~~~~G~pIafI~aGlmalAF~gf~G 208 (244)
T PRK01061 133 CAILGGVLFGITRNYPFIPMMIFSLGAGCGWWLAIVLFATIREKLAYSDVPKNLQGMGISFITTGLIAMAFMGLTG 208 (244)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccccchhHHHHHHHHHHHHHhcccC
Confidence 45566665433 3445556678888888999888888776665443222 122233344455555555544443
No 152
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=37.15 E-value=1.8e+02 Score=28.39 Aligned_cols=129 Identities=12% Similarity=0.027 Sum_probs=77.3
Q ss_pred hHHHHHHHHHHHHHhhHHHHHHHhhc--cCChHHHHHHHHHHHHHHHHHHHHh-----h----cCcc--cchhHHHHHHH
Q 011986 133 VRSIILLNAITVVYASNIPVIKEVEA--ITDPSAFTVVRFALSAIPFIPFVLR-----A----RDDV--HTRNAGFELGL 199 (473)
Q Consensus 133 ~~g~ll~l~a~~~wg~~~~~~k~~~~--~~~p~~~~~~R~~~a~l~~~~~~~~-----~----~~~~--~~~~~~ll~g~ 199 (473)
..|+.++.++.+.=+.+.+......+ +=++-|..|+--++..++++...-- + .+.. +.....+....
T Consensus 163 ~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~~vP~~~ 242 (330)
T KOG1583|consen 163 LIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGFKVPSMW 242 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCccccHHH
Confidence 46788888888887888877766544 4579999999999888777644311 0 0000 00000011111
Q ss_pred HHH-HHHHHHHHHhhc-------cchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986 200 WVS-LGYLMQALGLET-------SDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 200 ~~~-~~~~l~~~al~~-------~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~ 261 (473)
+.. ......|.+++. ++.-.++++..+-=.+..+++. .++..+++..|+|.++.++|.++-+
T Consensus 243 ~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa 313 (330)
T KOG1583|consen 243 VYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFA 313 (330)
T ss_pred HHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHH
Confidence 211 112223333332 2233344555555666777777 6789999999999999999988754
No 153
>PRK14397 membrane protein; Provisional
Probab=35.10 E-value=95 Score=29.21 Aligned_cols=24 Identities=8% Similarity=0.040 Sum_probs=14.2
Q ss_pred hhhhhhhhhhcCCCCCCccCCCCC
Q 011986 441 KADQKLELNKQNGFSSSPAAVTSR 464 (473)
Q Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~ 464 (473)
+.++.++.++++..++.+++..+.
T Consensus 194 k~~~~~~~~~~~~~~~~~~~~~~~ 217 (222)
T PRK14397 194 KHHDAAQGTAAGAAPTANADAADA 217 (222)
T ss_pred ccCccccccCCCCCCcccCCHHHc
Confidence 334445666677777777764443
No 154
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=34.75 E-value=5.5e+02 Score=26.81 Aligned_cols=51 Identities=6% Similarity=-0.006 Sum_probs=24.0
Q ss_pred HHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986 370 AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV 421 (473)
Q Consensus 370 ~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~ 421 (473)
.++-+-.--...+...+..++++++..+ --|......-.....++++++++
T Consensus 371 ~~vl~~~k~~~~~~~~L~~LY~~Ly~lL-q~EdyALL~GSl~LF~iLa~vM~ 421 (430)
T PF06123_consen 371 SSVLKSWKRGLIFAGLLAALYGFLYVLL-QSEDYALLMGSLLLFIILALVMY 421 (430)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHHHHH-HhhhHHHHHHHHHHHHHHHHHHh
Confidence 3333333334444555566677777654 34554444333333344444443
No 155
>KOG2325 consensus Predicted transporter/transmembrane protein [General function prediction only]
Probab=34.04 E-value=4.1e+02 Score=28.30 Aligned_cols=19 Identities=26% Similarity=0.394 Sum_probs=10.4
Q ss_pred cHhhHHHHHHHHHHHHHHh
Q 011986 404 GATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 404 ~~~~~~G~~lIl~g~~l~~ 422 (473)
|...|+.+++-+.+.+++.
T Consensus 208 Tap~w~m~i~~i~~~v~i~ 226 (488)
T KOG2325|consen 208 TAPAWLMAILWIIYIVIIL 226 (488)
T ss_pred chHHHHHHHHHHHHHHHHH
Confidence 4455666666555555443
No 156
>PF01350 Flavi_NS4A: Flavivirus non-structural protein NS4A; InterPro: IPR000404 Flaviviruses encode a single polyprotein. This is cleaved into three structural and seven non-structural proteins. The NS4A protein is small and poorly conserved among the Flaviviruses. NS4A contains multiple hydrophobic potential membrane spanning regions []. NS4A has only been found in cells infected by Kunjin virus [].; GO: 0016032 viral reproduction, 0016070 RNA metabolic process, 0044423 virion part
Probab=31.03 E-value=3.6e+02 Score=23.53 Aligned_cols=51 Identities=16% Similarity=0.019 Sum_probs=32.7
Q ss_pred HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 371 AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 371 al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
-+++-+.++.++.. +.-...+++++---.++.++.|+.++..=..++....
T Consensus 68 lm~~kgi~rm~lG~----~vm~~~~~llw~ggv~~~~IAg~~lv~filmvVLiPE 118 (144)
T PF01350_consen 68 LMRRKGIGRMSLGM----LVMAVAGYLLWMGGVPPGQIAGVLLVFFILMVVLIPE 118 (144)
T ss_pred hhcCCCcchhhHHH----HHHHHHHHHHHhcCCcHHHhHHHHHHHHHHHHhcccC
Confidence 46666666666543 2333445556666788889999988888666665543
No 157
>PF04550 Phage_holin_2: Phage holin family 2 ; InterPro: IPR007633 This entry represents the Bacteriophage P2, GpY, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=30.93 E-value=2.7e+02 Score=22.10 Aligned_cols=54 Identities=20% Similarity=0.273 Sum_probs=34.6
Q ss_pred cCcCchHHHHHH-----HHHH-HHhheeecCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhc
Q 011986 239 GAIVPARTWFGA-----VMSI-LGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISRS 294 (473)
Q Consensus 239 ~er~s~~~~~g~-----~lal-~GV~li~~~~~~~~~G~~laL~aal~~a~~~i~~k~~~~~ 294 (473)
+|+++++.++|= .+++ +|++++-.++-.. -.+.++.++++-+.|..+-..+.|+
T Consensus 27 ~Epit~RL~iGR~ilGs~~S~~Aga~Li~~Pdl~p--lAv~GlgsalGI~G~q~vE~~lrr~ 86 (89)
T PF04550_consen 27 NEPITLRLFIGRVILGSAVSVVAGAALIQFPDLPP--LAVIGLGSALGIAGYQAVEAWLRRR 86 (89)
T ss_pred CCCCchhHHhHHHHHhhHHHHHHHHHHhcCCCCCH--HHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 799999865543 3443 5555555565433 3467778888888888776655443
No 158
>PF04342 DUF486: Protein of unknown function, DUF486; InterPro: IPR007437 This family contains several proteins of uncharacterised function.
Probab=30.03 E-value=3.2e+02 Score=22.54 Aligned_cols=50 Identities=12% Similarity=0.090 Sum_probs=32.3
Q ss_pred hhccchhHHHHHHHHHH-HHHHHHHH-HhcCcCchHHHHHHHHHHHHhheee
Q 011986 212 LETSDAGRASFISMFTV-IVVPLLDG-MLGAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 212 l~~~~~~~asvi~~l~P-l~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~ 261 (473)
.+.-++++--++.-..- .+-+.++. ++||++++....|.++.+.+|.++.
T Consensus 56 ~~~~s~~QLKi~QEvitL~vF~~Fsv~~l~E~l~~n~l~af~~i~~av~fiF 107 (108)
T PF04342_consen 56 YQTFSLAQLKIIQEVITLVVFAPFSVFYLGEPLKWNYLWAFLCILGAVYFIF 107 (108)
T ss_pred ccccCHHHHHHHHHHHhhheeHHHHHHHhCCCccHHHHHHHHHHHHhhheee
Confidence 33345555555543222 22333444 7899999999999998888887653
No 159
>PF09656 PGPGW: Putative transmembrane protein (PGPGW); InterPro: IPR019099 This entry represents proteins that contain three predicted transmembrane helices and an unusual motif with consensus sequence PGPGW.
Probab=29.79 E-value=1.5e+02 Score=21.12 Aligned_cols=45 Identities=22% Similarity=0.378 Sum_probs=31.9
Q ss_pred HHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011986 245 RTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISR 293 (473)
Q Consensus 245 ~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a~~~i~~k~~~~ 293 (473)
...+|.++.++|++++..++. |.+..+++-...+.+.-..|+..+
T Consensus 4 v~v~G~~lv~~Gii~~~lPGp----G~l~i~~GL~iLa~ef~wArr~l~ 48 (53)
T PF09656_consen 4 VGVLGWVLVVAGIIMLPLPGP----GLLVIFLGLAILATEFPWARRLLR 48 (53)
T ss_pred hhhHHHHHHHHHHHhhcCCCC----cHHHHHHHHHHHHHhhHHHHHHHH
Confidence 356888999999999888764 446666666667777666665543
No 160
>KOG2322 consensus N-methyl-D-aspartate receptor glutamate-binding subunit [Signal transduction mechanisms]
Probab=29.12 E-value=5.1e+02 Score=24.62 Aligned_cols=23 Identities=13% Similarity=0.151 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhh
Q 011986 269 VGDLLNFLSAVFFGIHMLRTEHI 291 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i~~k~~ 291 (473)
.-.+++.++|+.+..|.+..-..
T Consensus 195 ~~~vya~lgAllf~~yl~~Dtql 217 (237)
T KOG2322|consen 195 LVMVYAALGALLFCGYLVYDTQL 217 (237)
T ss_pred HHHHHHHHHHHHHhHHHHhhhHH
Confidence 45577778888888888776543
No 161
>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase. This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.
Probab=28.87 E-value=5.6e+02 Score=25.02 Aligned_cols=55 Identities=11% Similarity=0.100 Sum_probs=32.2
Q ss_pred HHHHHHHHHHHHHHHHHH---HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHH
Q 011986 353 ALYTGIFSTGLCLWIEMA---AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWL 409 (473)
Q Consensus 353 ll~lg~~~~~~~~~l~~~---al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~ 409 (473)
++.+|+++...+ ++|.. -+++.+-.+..+...+.|+......+ +....+++..++
T Consensus 111 ~l~lg~~~~~~~-~~Yt~gP~~l~y~gLGE~~v~i~~G~l~v~g~~y-vq~~~~~~~~ll 168 (284)
T TIGR00751 111 FIALGALCIAAA-ITYTVGSKPYGYAGLGDISVLVFFGPLAVLGTQY-LQAHRVDWVGIL 168 (284)
T ss_pred HHHHHHHHHHHh-HhhcCCCCccccCchHHHHHHHHHHHHHHHHHHH-HhcCCCCHHHHH
Confidence 455666555332 33432 46777778888888887776655443 444455655444
No 162
>PRK12468 flhB flagellar biosynthesis protein FlhB; Reviewed
Probab=28.74 E-value=6e+02 Score=26.13 Aligned_cols=30 Identities=10% Similarity=0.102 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHhhhhhcCCCCCchhH
Q 011986 274 NFLSAVFFGIHMLRTEHISRSTNKKDFLPL 303 (473)
Q Consensus 274 aL~aal~~a~~~i~~k~~~~~~~~~~~~~~ 303 (473)
++++.+.-....+..+.+.-+...+||+..
T Consensus 104 ~i~~~~~Q~G~~~s~k~l~P~~~rlNP~~G 133 (386)
T PRK12468 104 ALAVPMLLGGVLFSGESIKFDLKRMSPVAG 133 (386)
T ss_pred HHHHHHHhhCceeccccCCCCchhcCHHHH
Confidence 344444444444455555555555666543
No 163
>PRK10862 SoxR reducing system protein RseC; Provisional
Probab=28.63 E-value=1e+02 Score=27.25 Aligned_cols=28 Identities=14% Similarity=0.185 Sum_probs=20.8
Q ss_pred HhcccChhHHHHHhhhHHHHHHHHHHHH
Q 011986 371 AMRDVSATETAIIYGLEPVWGAGFAWFI 398 (473)
Q Consensus 371 al~~~~a~~~s~l~~l~pv~a~l~~~il 398 (473)
++..-...+.+.+.|+-|+++++.+.++
T Consensus 68 ~i~e~~llkaa~lvYllPLl~li~ga~l 95 (154)
T PRK10862 68 GIAEGSLLRSALLVYMTPLVGLFLGAAL 95 (154)
T ss_pred ecchhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455556778888999999988877654
No 164
>TIGR01299 synapt_SV2 synaptic vesicle protein SV2. This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.
Probab=27.91 E-value=9.1e+02 Score=27.21 Aligned_cols=177 Identities=12% Similarity=-0.025 Sum_probs=0.0
Q ss_pred cCcccchhHHHHHHHHHHHH---------HHHHHHHhhccchhHHHHHHHHHHHHHHHHHH---HhcCcCchHHHHHHHH
Q 011986 185 RDDVHTRNAGFELGLWVSLG---------YLMQALGLETSDAGRASFISMFTVIVVPLLDG---MLGAIVPARTWFGAVM 252 (473)
Q Consensus 185 ~~~~~~~~~~ll~g~~~~~~---------~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~---~l~er~s~~~~~g~~l 252 (473)
...+..+...++.++..... ..-....-...+....+.+.....+..++... .+-+|+.+++.+-+.+
T Consensus 160 ~~~~~~~~l~~i~~l~~~~~g~d~~~is~ilp~i~~~~gls~~~~g~l~s~~~lG~iiG~li~G~LsDR~GRR~~lii~l 239 (742)
T TIGR01299 160 GHGRFQWALFFVLGLALMADGVEVFVVGFVLPSAEKDLCIPDSGKGMLGLIVYLGMMVGAFFWGGLADKLGRKQCLLICL 239 (742)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHH
Q ss_pred HHHHhheeecC-----CCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHhccCCC
Q 011986 253 SILGVALLESS-----GSPPSVGDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFIGGSLGG 327 (473)
Q Consensus 253 al~GV~li~~~-----~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 327 (473)
.+.++..+... ......-.+.++..+..+.....+...+......-...........++.++...+.........
T Consensus 240 il~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G 319 (742)
T TIGR01299 240 SVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYG 319 (742)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q ss_pred CCCCCCCCcchhhhhcccchhhHHHHHHHHHHHHHHHHHHHHH
Q 011986 328 TQGSDPSSWTWTMFWDWMVAFPWIPALYTGIFSTGLCLWIEMA 370 (473)
Q Consensus 328 ~~~~~~~~~~~~~~~~~~~~~~~~~ll~lg~~~~~~~~~l~~~ 370 (473)
............ .|-.+++++++..++...++..
T Consensus 320 ~~~~~g~~~~~~---------gWR~l~~i~~lp~ll~ll~~~~ 353 (742)
T TIGR01299 320 WSFQMGSAYQFH---------SWRVFVIVCAFPCVFAIGALTF 353 (742)
T ss_pred chhccccccccc---------cHHHHHHHHHHHHHHHHHHHHH
No 165
>PF12811 BaxI_1: Bax inhibitor 1 like ; InterPro: IPR010539 Bax inhibitor-1 (BI1) family contains six known genes in human. Some members of BI1 family have been proved to play important roles in cell death [, ].
Probab=27.45 E-value=5.9e+02 Score=24.84 Aligned_cols=50 Identities=14% Similarity=0.246 Sum_probs=23.9
Q ss_pred CHHHHHHHHHHHHHHHHHHH----HhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHH
Q 011986 268 SVGDLLNFLSAVFFGIHMLR----TEHISRSTNKKDFLPLLGYEVCVIALLSAVWYFI 321 (473)
Q Consensus 268 ~~G~~laL~aal~~a~~~i~----~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 321 (473)
.+|+.+.++.....++..++ +++..+..- -....|...++..+.+.++.+
T Consensus 209 plgI~~slv~v~iAa~sLllDFd~Ie~~v~~ga----Pk~~eW~~AfGL~vTLVWLYl 262 (274)
T PF12811_consen 209 PLGIGFSLVVVGIAALSLLLDFDFIEQGVRQGA----PKKMEWYAAFGLLVTLVWLYL 262 (274)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHHHcCC----ChhhHHHHHHHHHHHHHHHHH
Confidence 45666666655544444433 222322211 124456566666666555443
No 166
>PRK11715 inner membrane protein; Provisional
Probab=27.32 E-value=7.4e+02 Score=25.95 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHH--HHHHhcCcCchHHHHHHHHHHHHhheee
Q 011986 193 AGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPL--LDGMLGAIVPARTWFGAVMSILGVALLE 261 (473)
Q Consensus 193 ~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~l--l~~~l~er~s~~~~~g~~lal~GV~li~ 261 (473)
..++.|+...+.+.+..-==+|.+-..|-++..+.++...- ++.++|.+-...-..+++.++-|++...
T Consensus 333 QYlLVGlAl~lFYLLLLSlSEHigF~~AYliAa~a~v~li~~Y~~~vl~~~k~g~~~~~~L~~LYg~Ly~l 403 (436)
T PRK11715 333 QYLLVGLALVLFYLLLLSLSEHIGFTLAYLIAALACVLLIGFYLSAVLRSWKRGLLFAAALAALYGVLYGL 403 (436)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhchHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 34556665555554433333566666666666554442222 2225555444444455555555555433
No 167
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=26.40 E-value=7.6e+02 Score=25.75 Aligned_cols=21 Identities=19% Similarity=-0.083 Sum_probs=15.6
Q ss_pred hhHHHHHHHHHHHHHHhhcCC
Q 011986 406 TGWLGAALVLVGSLTVQIFGS 426 (473)
Q Consensus 406 ~~~~G~~lIl~g~~l~~~~~~ 426 (473)
..+.|.++++.|+.++.+.++
T Consensus 412 ~~~~~~~~~~~g~~~y~~~~~ 432 (468)
T TIGR03810 412 YLLLSAILYAPGIYFYARARK 432 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 567788888999888766444
No 168
>PF12805 FUSC-like: FUSC-like inner membrane protein yccS
Probab=26.00 E-value=5.9e+02 Score=24.60 Aligned_cols=56 Identities=9% Similarity=0.042 Sum_probs=29.5
Q ss_pred HhcCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Q 011986 237 MLGAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTEHISR 293 (473)
Q Consensus 237 ~l~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a~~~i~~k~~~~ 293 (473)
.+|+|-......++++++.++....... ......++.++|++.|.+..++.-.+..
T Consensus 42 ~~G~r~~~i~~~~Ll~~v~t~~~~~~~~-~~~~~~~l~~~Gglwy~~lsl~~~~l~p 97 (284)
T PF12805_consen 42 VYGPRAATIGFATLLVAVYTMAGPSPGP-EALEHALLFLAGGLWYLLLSLLWWPLRP 97 (284)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCCCcch-HHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4566665555444444444433332221 2233446677777777777766655543
No 169
>PRK12586 putative monovalent cation/H+ antiporter subunit G; Reviewed
Probab=25.97 E-value=4.3e+02 Score=23.09 Aligned_cols=15 Identities=7% Similarity=0.111 Sum_probs=7.3
Q ss_pred ccHhhHHHHHHHHHH
Q 011986 403 WGATGWLGAALVLVG 417 (473)
Q Consensus 403 ~~~~~~~G~~lIl~g 417 (473)
.....++.++++++.
T Consensus 69 ~~~k~lLii~fl~lT 83 (145)
T PRK12586 69 FSVRLLLSLVFINLT 83 (145)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444455555555443
No 170
>PRK10245 adrA diguanylate cyclase AdrA; Provisional
Probab=25.88 E-value=7e+02 Score=25.18 Aligned_cols=44 Identities=23% Similarity=0.029 Sum_probs=31.9
Q ss_pred cCcCchHHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHH
Q 011986 239 GAIVPARTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFG 282 (473)
Q Consensus 239 ~er~s~~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a 282 (473)
-+|+-+.+.+|+.++++=++.+...-+.+.+..++.+..++.|.
T Consensus 33 ~~r~~~~r~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p 76 (366)
T PRK10245 33 ARRVRLPRAVGLAGMFLPIASTLVSHPPPGWWWLLLVGWAFVWP 76 (366)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHhcccchHHHHHHHHHHHHhH
Confidence 35666678888888888777666666666666677777777774
No 171
>TIGR01943 rnfA electron transport complex, RnfABCDGE type, A subunit. The six subunit complex RnfABCDGE in Rhodobacter capsulatus encodes an apparent NADH oxidoreductase responsible for electron transport to nitrogenase, necessary for nitrogen fixation. A closely related complex in E. coli, RsxABCDGE (Reducer of SoxR), reduces the 2Fe-2S-containing superoxide sensor SoxR, active as a transcription factor when oxidized. This family of putative NADH oxidoreductase complexes exists in many of the same species as the related NQR, a Na(+)-translocating NADH-quinone reductase, but is distinct. This model describes the A subunit.
Probab=25.79 E-value=5.2e+02 Score=23.69 Aligned_cols=44 Identities=20% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHhheeec-CCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986 252 MSILGVALLES-SGSPPSVGDLLNFLSAVFFGIHMLRTEHISRST 295 (473)
Q Consensus 252 lal~GV~li~~-~~~~~~~G~~laL~aal~~a~~~i~~k~~~~~~ 295 (473)
.++.|..+... .+..+......++.++++|.+..++..-++++.
T Consensus 113 CaVLG~a~~~~~~~~~~~~s~~~glg~GlGf~lal~l~a~iRE~l 157 (190)
T TIGR01943 113 CAVLGVALLNIQLDYNLLQSIVYAVGAGLGFTLAMVIFAGIRERL 157 (190)
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556655443 444555567888888888888888777665543
No 172
>PRK10263 DNA translocase FtsK; Provisional
Probab=25.75 E-value=4.6e+02 Score=31.52 Aligned_cols=13 Identities=0% Similarity=-0.309 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHH
Q 011986 224 SMFTVIVVPLLDG 236 (473)
Q Consensus 224 ~~l~Pl~~~ll~~ 236 (473)
.++.|++.++.++
T Consensus 83 AYLLP~LL~~~a~ 95 (1355)
T PRK10263 83 AYTIPVIIVGGCW 95 (1355)
T ss_pred HHHHHHHHHHHHH
Confidence 3444555555555
No 173
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=25.19 E-value=6.6e+02 Score=25.99 Aligned_cols=121 Identities=12% Similarity=0.078 Sum_probs=54.9
Q ss_pred HHHHHHHHHHHHHHHHHhhccchhH--HHHHHHHHHHHHHHHHHH-----hcCcCchHHHHHHHHHHHHhheeecC-CCC
Q 011986 195 FELGLWVSLGYLMQALGLETSDAGR--ASFISMFTVIVVPLLDGM-----LGAIVPARTWFGAVMSILGVALLESS-GSP 266 (473)
Q Consensus 195 ll~g~~~~~~~~l~~~al~~~~~~~--asvi~~l~Pl~~~ll~~~-----l~er~s~~~~~g~~lal~GV~li~~~-~~~ 266 (473)
++-+.+.-++++.|+-+=....-.. .+.++...-.-...+++. .+.|++..-... =+++|.+-+... +.-
T Consensus 201 ~lGa~lLWfGWfGFN~GSal~~~~~a~~a~~nT~lAaa~g~l~w~~~e~~~~~Kp~~lg~~s--G~vAGLVaITpaag~V 278 (409)
T COG0004 201 VLGAALLWFGWFGFNAGSALAANGVAALAFVNTNLAAAAGALGWMLIEWLRNGKPSLLGAAS--GAVAGLVAITPAAGFV 278 (409)
T ss_pred HHHHHHHHHHHccCCccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCchhhhhh--HHHhHHHhcCCccccc
Confidence 3444556677777766543332222 222222222333334442 234555442221 245676666654 222
Q ss_pred CCH-HHHHHHHHHHHHHHHHHHHhhhhhcCCCCCchhHHHHHHHHHHHHHHH
Q 011986 267 PSV-GDLLNFLSAVFFGIHMLRTEHISRSTNKKDFLPLLGYEVCVIALLSAV 317 (473)
Q Consensus 267 ~~~-G~~laL~aal~~a~~~i~~k~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 317 (473)
..+ ..+..+++++..-...-..||..+-.|.++.+..-....+.++++..+
T Consensus 279 ~p~~A~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~Gi 330 (409)
T COG0004 279 SPWGALIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGI 330 (409)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHH
Confidence 223 344555544443333333444335556667665555444444444433
No 174
>PRK12574 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.92 E-value=4.4e+02 Score=22.90 Aligned_cols=61 Identities=15% Similarity=0.104 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHHHHHHHHh-hhhhcCCCCCchhHHH
Q 011986 245 RTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTE-HISRSTNKKDFLPLLG 305 (473)
Q Consensus 245 ~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a~~~i~~k-~~~~~~~~~~~~~~~~ 305 (473)
.+++.-++.+.|+.++..+.+.+.-|..-+++.+....++++... +-.++.-+.++.....
T Consensus 12 ~r~l~p~i~l~s~ylll~GH~~PGGGF~gGli~a~a~iL~~la~G~~~~~~~~~~~~~~l~~ 73 (141)
T PRK12574 12 TKIVVFILLTFGFYLFLAGHNNPGGGFIGGLIFSSAFILMFLAFGVEEVLESLPIDFRKLMI 73 (141)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHcCHHHHHHHcCCCHHHHHH
Confidence 355667778889988888877777788888888888888887654 2223333344444443
No 175
>PRK02463 OxaA-like protein precursor; Provisional
Probab=24.76 E-value=3.1e+02 Score=27.20 Aligned_cols=41 Identities=12% Similarity=0.146 Sum_probs=25.0
Q ss_pred HHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHh
Q 011986 381 AIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQ 422 (473)
Q Consensus 381 s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~ 422 (473)
-.+.++.|++.+++++.+ ---+...-.++.++-++=.+++.
T Consensus 208 k~m~~~~Pim~~~~~~~~-PagL~lYW~~snlfsi~Q~~i~~ 248 (307)
T PRK02463 208 KAMMYMMPIMMVVFSFSS-PAGVGLYWLVGGFFSIIQQLITT 248 (307)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHH
Confidence 447788888888877643 34455555555555555555544
No 176
>PRK12573 putative monovalent cation/H+ antiporter subunit B; Reviewed
Probab=24.09 E-value=4.1e+02 Score=23.05 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHhheeecCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 011986 245 RTWFGAVMSILGVALLESSGSPPSVGDLLNFLSAVFFGIHMLRTE 289 (473)
Q Consensus 245 ~~~~g~~lal~GV~li~~~~~~~~~G~~laL~aal~~a~~~i~~k 289 (473)
.+.+.-++.+.|+.++..+.+.+.-|..-+++.+..+.++++...
T Consensus 12 ~r~l~p~i~l~s~yv~l~GH~~PGGGF~gGli~a~a~iL~~la~G 56 (140)
T PRK12573 12 AKIVTFIILLFSVFLFLAGHNEPGGGFIGGLITASALVILLLAFD 56 (140)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHHHHHHHcC
Confidence 355666777889988888877777788888888888888887654
No 177
>COG1030 NfeD Membrane-bound serine protease (ClpP class) [Posttranslational modification, protein turnover, chaperones]
Probab=23.82 E-value=8.5e+02 Score=25.44 Aligned_cols=66 Identities=18% Similarity=0.231 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHHHHHHHhheeecCC
Q 011986 198 GLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAVMSILGVALLESSG 264 (473)
Q Consensus 198 g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~lal~GV~li~~~~ 264 (473)
|+++.+...+.++++...+...+.++..+.=+...++..+ --.+......|++..++|.+++...+
T Consensus 261 g~iG~i~LlL~f~g~~~~~~~~~gllLiilG~iLiv~E~~-~p~fGvigl~Gii~~iiG~~~L~~~~ 326 (436)
T COG1030 261 GIIGAILLLLGFYGLLFLGINWAGLLLIILGAILIVAEAF-VPGFGVIGLLGIILFIIGLLLLFPSG 326 (436)
T ss_pred HHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHh-cccchHHHHHHHHHHHHhhhhccCCC
Confidence 4445555566667777776666555544332222222211 11112344556666667776666544
No 178
>COG3476 Tryptophan-rich sensory protein (mitochondrial benzodiazepine receptor homolog) [Signal transduction mechanisms]
Probab=23.58 E-value=5.3e+02 Score=22.98 Aligned_cols=60 Identities=10% Similarity=-0.018 Sum_probs=41.2
Q ss_pred HHHHHHHHHhcccChhHHHHHhh-hHHHHHHHHHHHHhcC-cccHhhHHHHHHHHHHHHHHhh
Q 011986 363 LCLWIEMAAMRDVSATETAIIYG-LEPVWGAGFAWFILGE-RWGATGWLGAALVLVGSLTVQI 423 (473)
Q Consensus 363 ~~~~l~~~al~~~~a~~~s~l~~-l~pv~a~l~~~il~gE-~~~~~~~~G~~lIl~g~~l~~~ 423 (473)
-++..|.+.-.... +......| ++-+....+..+++++ .+....+.|..+-++..++...
T Consensus 63 Sa~lvW~~~~~~~~-~~~~~~ly~~ql~ln~awspiff~l~~l~~a~i~~lll~~~vl~l~i~ 124 (161)
T COG3476 63 SAYLVWEKGPGQGT-SWLLMFLYLLQLILNFAWSPIFFGLRSLGAALIIILLLWIAVLVLTII 124 (161)
T ss_pred HHHHHHHHcCCCch-hHHHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHH
Confidence 55777775544444 45555555 8999999999999997 7877777777765555444433
No 179
>PRK14789 lipoprotein signal peptidase; Provisional
Probab=23.43 E-value=5.8e+02 Score=23.40 Aligned_cols=12 Identities=8% Similarity=-0.268 Sum_probs=6.3
Q ss_pred HHHHHHhcCccc
Q 011986 393 GFAWFILGERWG 404 (473)
Q Consensus 393 l~~~il~gE~~~ 404 (473)
+++-+.+|....
T Consensus 107 liDRl~~G~VvD 118 (191)
T PRK14789 107 LVDRIRQGYVVD 118 (191)
T ss_pred HHHHHhcCceEE
Confidence 445555665544
No 180
>PF09925 DUF2157: Predicted membrane protein (DUF2157); InterPro: IPR018677 This family of various hypothetical prokaryotic proteins has no known function.
Probab=23.31 E-value=4.8e+02 Score=22.40 Aligned_cols=85 Identities=14% Similarity=0.036 Sum_probs=42.0
Q ss_pred hccCChHHHHHHHHHHHHHHHHHHHHh-hcCcccchhHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHH
Q 011986 157 EAITDPSAFTVVRFALSAIPFIPFVLR-ARDDVHTRNAGFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLD 235 (473)
Q Consensus 157 ~~~~~p~~~~~~R~~~a~l~~~~~~~~-~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~ 235 (473)
-+++++..-..+-............+. ++++.......+..+.+. ++-.+...+..|-..++..-...+.-+.+..++
T Consensus 56 W~~i~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l-~ga~ialigQ~y~~~~~~~~~~~~W~~~~l~~~ 134 (145)
T PF09925_consen 56 WDDIPRLAKLGLLLALLLLSYVGGFWLWRRRSPRLAEALLLLGAVL-FGALIALIGQIYQTGADPWQLFLLWALLALPLA 134 (145)
T ss_pred HHHccHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHH-HHHHHHHHHhHhcCCCchHHHHHHHHHHHHHHH
Confidence 466777665555544444333333332 233333333333333332 444445556555555555555555556666666
Q ss_pred HHhcCcC
Q 011986 236 GMLGAIV 242 (473)
Q Consensus 236 ~~l~er~ 242 (473)
+.++.+.
T Consensus 135 ~~~~~~~ 141 (145)
T PF09925_consen 135 YLLRSRG 141 (145)
T ss_pred HHHCCcc
Confidence 6666554
No 181
>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional
Probab=23.26 E-value=7.3e+02 Score=24.49 Aligned_cols=56 Identities=11% Similarity=0.040 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHHHH---HHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHH
Q 011986 353 ALYTGIFSTGLCLWIEM---AAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLG 410 (473)
Q Consensus 353 ll~lg~~~~~~~~~l~~---~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G 410 (473)
++.+|+++...+ ++|. .-+++.+-.+..+...+.|+......++ ....+++..++.
T Consensus 121 ~l~ig~~g~~~~-~~YT~gP~~l~y~gLGE~~v~l~~G~l~v~g~~yv-~t~~~~~~~~~~ 179 (304)
T PRK07419 121 VLGLVLLCCFLG-YLYQGPPFRLGYQGLGEPLCFLAFGPLAVAAALYS-QTPSWSLIPLAA 179 (304)
T ss_pred HHHHHHHHHHHh-heccCCCcccCCCCchHHHHHHHHHHHHHHHHHHH-hcCCCCHHHHHH
Confidence 355555554322 2232 2367777788887777777766655544 344555544443
No 182
>TIGR00892 2A0113 monocarboxylate transporter 1.
Probab=22.92 E-value=6.5e+02 Score=26.01 Aligned_cols=15 Identities=13% Similarity=0.197 Sum_probs=6.2
Q ss_pred HhhHHHHHHHHHHHH
Q 011986 405 ATGWLGAALVLVGSL 419 (473)
Q Consensus 405 ~~~~~G~~lIl~g~~ 419 (473)
...+++.++.+++.+
T Consensus 401 ~~f~~~~~~~li~~~ 415 (455)
T TIGR00892 401 YIFYASGSIVVSAGL 415 (455)
T ss_pred hHHHHhhHHHHHHHH
Confidence 333444444444433
No 183
>PF06123 CreD: Inner membrane protein CreD; InterPro: IPR010364 This family consists of several bacterial CreD or Cet inner membrane proteins. Dominant mutations of the cet gene of Escherichia coli result in tolerance to colicin E2 and increased amounts of an inner membrane protein with a Mr of 42,000. The cet gene is shown to be in the same operon as the phoM gene, which is required in a phoR background for expression of the structural gene for alkaline phosphatase, phoA. Although the Cet protein is not required for phoA expression, it has been suggested that the Cet protein has an enhancing effect on the transcription of phoA [].
Probab=22.74 E-value=8.9e+02 Score=25.30 Aligned_cols=23 Identities=13% Similarity=0.235 Sum_probs=10.1
Q ss_pred HhcCcCchHHHHHHHHHHHHhhe
Q 011986 237 MLGAIVPARTWFGAVMSILGVAL 259 (473)
Q Consensus 237 ~l~er~s~~~~~g~~lal~GV~l 259 (473)
++|.+-...-..+++.++-|++.
T Consensus 373 vl~~~k~~~~~~~~L~~LY~~Ly 395 (430)
T PF06123_consen 373 VLKSWKRGLIFAGLLAALYGFLY 395 (430)
T ss_pred HHhcchHHHHHHHHHHHHHHHHH
Confidence 45444333344444444444443
No 184
>CHL00045 ccsA cytochrome c biogenesis protein
Probab=22.41 E-value=7.8e+02 Score=24.50 Aligned_cols=56 Identities=4% Similarity=-0.010 Sum_probs=25.2
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCc-ccch-hHHHHHHHH-HHHHHHHHHHHhhccchhHH
Q 011986 165 FTVVRFALSAIPFIPFVLRARDD-VHTR-NAGFELGLW-VSLGYLMQALGLETSDAGRA 220 (473)
Q Consensus 165 ~~~~R~~~a~l~~~~~~~~~~~~-~~~~-~~~ll~g~~-~~~~~~l~~~al~~~~~~~a 220 (473)
+.+.-+.++.+..+..+..++++ .... .+.+..|++ ..+....-.+...+.|.++.
T Consensus 13 ~~~~~y~ls~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~ht~~l~~r~~~~g~~P~snl 71 (319)
T CHL00045 13 ISFSLLSIVTLIYWITLLVDEIIGLYDSSEKGMIITFFCITGLLVTRWIYSGHFPLSNL 71 (319)
T ss_pred HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccch
Confidence 33344556665555554444332 2221 122223333 23333444555666676665
No 185
>PRK11715 inner membrane protein; Provisional
Probab=22.35 E-value=9.1e+02 Score=25.28 Aligned_cols=39 Identities=8% Similarity=0.089 Sum_probs=18.9
Q ss_pred HHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHH
Q 011986 382 IIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTV 421 (473)
Q Consensus 382 ~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~ 421 (473)
....+.-+++++++.+ --|......-.....++++++++
T Consensus 389 ~~~~L~~LYg~Ly~lL-q~EDyALL~GSllLF~~La~vM~ 427 (436)
T PRK11715 389 FAAALAALYGVLYGLL-QSEDYALLLGSLLLFAVLALVMF 427 (436)
T ss_pred HHHHHHHHHHHHHHHH-HHhHHHHHHHHHHHHHHHHHHHh
Confidence 3444555666666643 34555444444444444444443
No 186
>TIGR00997 ispZ intracellular septation protein A. This partially characterized protein, whose absence can cause a cell division defect in an intracellularly replicating bacterium, is found only so far only in the Proteobacteria.
Probab=22.19 E-value=5.9e+02 Score=23.05 Aligned_cols=60 Identities=15% Similarity=0.049 Sum_probs=32.6
Q ss_pred HHHHhhccchhHHHHHHHHHHHHHHHHHHHhcCcCchHHHHHHH-HHHHHhheeecCCCCC
Q 011986 208 QALGLETSDAGRASFISMFTVIVVPLLDGMLGAIVPARTWFGAV-MSILGVALLESSGSPP 267 (473)
Q Consensus 208 ~~~al~~~~~~~asvi~~l~Pl~~~ll~~~l~er~s~~~~~g~~-lal~GV~li~~~~~~~ 267 (473)
++.++++.+.-.|+...-..-+...+..++.++|+++.+++..+ +.+.|.+-+..+|+.+
T Consensus 13 Ff~~y~~~~I~~AT~~~~vat~~~~~~~~~~~~~v~~m~~is~~lv~vFGglTl~~~d~~F 73 (178)
T TIGR00997 13 FFATYKMTGIFAATIALLVATIIAIGLSYVKYKKVEKMQWISFVLIVVFGGLTLIFHDSRF 73 (178)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHhCChhh
Confidence 33344433433344333333444444555678899999887554 4445655555555544
No 187
>smart00786 SHR3_chaperone ER membrane protein SH3. This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) PUBMED:15623581. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=21.78 E-value=41 Score=30.85 Aligned_cols=15 Identities=40% Similarity=0.268 Sum_probs=8.2
Q ss_pred HHHHHHHHHHhhcCC
Q 011986 412 ALVLVGSLTVQIFGS 426 (473)
Q Consensus 412 ~lIl~g~~l~~~~~~ 426 (473)
+++++|+++.+....
T Consensus 141 ~~vLvGVL~LQaG~w 155 (196)
T smart00786 141 LFVLVGVLVLQAGLW 155 (196)
T ss_pred HHHHHHHHHHHhhHH
Confidence 455566666555443
No 188
>PRK11010 ampG muropeptide transporter; Validated
Probab=21.75 E-value=9.4e+02 Score=25.19 Aligned_cols=54 Identities=22% Similarity=0.345 Sum_probs=25.9
Q ss_pred HhcccChhHHHHHhhhHHHHHHHH----HHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 371 AMRDVSATETAIIYGLEPVWGAGF----AWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 371 al~~~~a~~~s~l~~l~pv~a~l~----~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.-++.+++..+.++.+.-+-..+. |++.-.--.....++..++.+.|.++....
T Consensus 345 ~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~ 402 (491)
T PRK11010 345 CNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVC 402 (491)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH
Confidence 344456666666655443333322 333211113334555666666666655443
No 189
>TIGR00805 oat sodium-independent organic anion transporter. Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.
Probab=21.42 E-value=2.4e+02 Score=31.03 Aligned_cols=27 Identities=15% Similarity=0.289 Sum_probs=15.6
Q ss_pred HHHHHHHhcCcCchHHHHHHHHHHHHh
Q 011986 231 VPLLDGMLGAIVPARTWFGAVMSILGV 257 (473)
Q Consensus 231 ~~ll~~~l~er~s~~~~~g~~lal~GV 257 (473)
..++...+++|..+++|+++.+.+.|+
T Consensus 84 ~~i~v~~~~~r~~r~~~i~~g~ll~~l 110 (633)
T TIGR00805 84 LIIFVSYFGTKLHRPIVIGIGCAIMGL 110 (633)
T ss_pred HHHHHHHhhcccCcceEEEecHHHHHH
Confidence 333333677888888776555444333
No 190
>PF15099 PIRT: Phosphoinositide-interacting protein family
Probab=21.39 E-value=48 Score=28.04 Aligned_cols=16 Identities=19% Similarity=0.274 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 011986 352 PALYTGIFSTGLCLWI 367 (473)
Q Consensus 352 ~ll~lg~~~~~~~~~l 367 (473)
.+++.|++.+.++|.+
T Consensus 58 vili~GvvvT~vays~ 73 (129)
T PF15099_consen 58 VILIAGVVVTAVAYSF 73 (129)
T ss_pred HHHHHhhHhheeeEee
Confidence 4566666666666554
No 191
>TIGR01940 nqrE NADH:ubiquinone oxidoreductase, Na(+)-translocating, E subunit. This model represents the NqrE subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.
Probab=21.14 E-value=6.7e+02 Score=23.22 Aligned_cols=44 Identities=14% Similarity=0.104 Sum_probs=29.7
Q ss_pred HHHHHhheeecCCC-CCCHHHHHHHHHHHHHHHHHHHHhhhhhcC
Q 011986 252 MSILGVALLESSGS-PPSVGDLLNFLSAVFFGIHMLRTEHISRST 295 (473)
Q Consensus 252 lal~GV~li~~~~~-~~~~G~~laL~aal~~a~~~i~~k~~~~~~ 295 (473)
.++.|..+.....+ .+......++.++++|.+..++..-++++.
T Consensus 123 CaVLG~a~~~a~~~~~~~~S~~~glg~GlGf~lal~l~a~iRE~l 167 (200)
T TIGR01940 123 CAIFGGVLFMVQREYNFGESVVYGFGSGLGWMLAIVALAGIREKL 167 (200)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666554433 555667888888888888888877665544
No 192
>PF11044 TMEMspv1-c74-12: Plectrovirus spv1-c74 ORF 12 transmembrane protein; InterPro: IPR022743 This is a group of proteins expressed by Plectroviruses. The Plectroviruses are single-stranded DNA viruses belonging to the Inoviridae. This entry represents putative transmembrane proteins of unknown function.
Probab=21.01 E-value=47 Score=22.51 Aligned_cols=16 Identities=6% Similarity=-0.049 Sum_probs=9.0
Q ss_pred ccHhhHHHHHHHHHHH
Q 011986 403 WGATGWLGAALVLVGS 418 (473)
Q Consensus 403 ~~~~~~~G~~lIl~g~ 418 (473)
|+|..++=.++|++|+
T Consensus 2 p~wlt~iFsvvIil~I 17 (49)
T PF11044_consen 2 PTWLTTIFSVVIILGI 17 (49)
T ss_pred chHHHHHHHHHHHHHH
Confidence 4555555555555555
No 193
>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]
Probab=20.69 E-value=9.5e+02 Score=24.87 Aligned_cols=41 Identities=12% Similarity=0.059 Sum_probs=24.5
Q ss_pred CChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHH
Q 011986 160 TDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLW 200 (473)
Q Consensus 160 ~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~ 200 (473)
++.....++++.++.+-..++..---++.|...+++...++
T Consensus 93 ip~~~f~~FQ~~FAait~alisGa~AER~kf~a~lvf~~lw 133 (409)
T COG0004 93 IPELVFFAFQMMFAAITPALISGAVAERMKFSAYLLFSVLW 133 (409)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHH
Confidence 45667777888888777776665544455544444444333
No 194
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=20.55 E-value=8.4e+02 Score=24.16 Aligned_cols=55 Identities=15% Similarity=0.086 Sum_probs=30.0
Q ss_pred HHHHHHHHHHHHHHHHHHH---hcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHH
Q 011986 353 ALYTGIFSTGLCLWIEMAA---MRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWL 409 (473)
Q Consensus 353 ll~lg~~~~~~~~~l~~~a---l~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~ 409 (473)
++.+|+++.++++. |+.+ +.+.+-.+......+.++... .++++=-+.+++..++
T Consensus 123 ~l~lG~l~~~~g~~-YTgGp~PlgY~gLGEi~~~vffG~l~v~-g~~yiqt~~~~~~~ll 180 (303)
T COG1575 123 VLLLGLLCIAAGIL-YTGGPFPLGYMGLGEIFVGVFFGPLIVL-GAYYIQTGRLSWAILL 180 (303)
T ss_pred HHHHHHHHHHheee-eccCCcCcccCCHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHH
Confidence 56667766644433 3322 556666777766666665443 3333335566655443
No 195
>PF08229 SHR3_chaperone: ER membrane protein SH3 ; InterPro: IPR013248 This family of proteins are membrane localised chaperones that are required for correct plasma membrane localisation of amino acid permeases (AAPs) []. Shr3 prevents AAPs proteins from aggregating and assists in their correct folding. In the absence of Shr3, AAPs are retained in the ER.
Probab=20.12 E-value=65 Score=29.69 Aligned_cols=18 Identities=44% Similarity=0.360 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHhhcCCCC
Q 011986 411 AALVLVGSLTVQIFGSSS 428 (473)
Q Consensus 411 ~~lIl~g~~l~~~~~~~~ 428 (473)
++++++|+++.+......
T Consensus 140 i~~~LvGVLvLQaG~~YA 157 (196)
T PF08229_consen 140 IALVLVGVLVLQAGQWYA 157 (196)
T ss_pred HHHHHHHHHHHHhhHHHH
Confidence 355667777776655443
Done!