Query 011986
Match_columns 473
No_of_seqs 249 out of 1672
Neff 8.4
Searched_HMMs 29240
Date Mon Mar 25 19:21:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011986.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011986hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.9 1.5E-09 5.2E-14 92.8 7.9 71 355-425 34-105 (137)
2 3b5d_A Multidrug transporter E 98.6 2.1E-07 7E-12 76.7 10.1 70 355-424 34-104 (110)
3 3b5d_A Multidrug transporter E 98.5 1.2E-06 4.2E-11 72.0 12.5 100 135-263 3-104 (110)
4 2i68_A Protein EMRE; transmemb 98.4 4.7E-07 1.6E-11 77.3 7.2 68 196-263 35-104 (137)
5 3l1l_A Arginine/agmatine antip 45.0 77 0.0026 31.1 9.2 25 405-429 408-432 (445)
6 1pw4_A Glycerol-3-phosphate tr 41.9 2.4E+02 0.0081 26.9 19.0 15 161-175 118-132 (451)
7 3b9w_A Ammonium transporter fa 39.5 2.9E+02 0.0099 27.2 18.4 61 353-414 262-329 (407)
8 3b9w_A Ammonium transporter fa 27.5 4.5E+02 0.015 25.8 12.6 16 198-213 184-199 (407)
9 2zxe_G FXYD10, phospholemman-l 25.7 45 0.0015 24.3 2.6 20 408-427 25-44 (74)
10 4dx5_A Acriflavine resistance 14.6 4.6E+02 0.016 29.2 9.2 52 365-416 885-936 (1057)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.94 E-value=1.5e-09 Score=92.82 Aligned_cols=71 Identities=17% Similarity=0.324 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhcC
Q 011986 355 YTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIFG 425 (473)
Q Consensus 355 ~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~~ 425 (473)
.++++++++++++|++++++.+++.+..+ .++.|+++.++++++|||++++.+++|+++|++|++++...+
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~~ 105 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 46777888999999999999999999888 899999999999999999999999999999999999987654
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.61 E-value=2.1e-07 Score=76.72 Aligned_cols=70 Identities=17% Similarity=0.327 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHHHHHhcccChhHHHHH-hhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHHHHhhc
Q 011986 355 YTGIFSTGLCLWIEMAAMRDVSATETAII-YGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSLTVQIF 424 (473)
Q Consensus 355 ~lg~~~~~~~~~l~~~al~~~~a~~~s~l-~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~l~~~~ 424 (473)
.++++..++++.++.+++|+.+.+.+..+ ..+.|+++.++++++|||++++.+++|.++|++|+++....
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 46677788999999999999999999888 89999999999999999999999999999999999988764
No 3
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.53 E-value=1.2e-06 Score=72.04 Aligned_cols=100 Identities=16% Similarity=0.143 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhhcCcccchhHHHHHHHHHHHHHHHHHHHhhc
Q 011986 135 SIILLNAITVVYASNIPVIKEVEAITDPSAFTVVRFALSAIPFIPFVLRARDDVHTRNAGFELGLWVSLGYLMQALGLET 214 (473)
Q Consensus 135 g~ll~l~a~~~wg~~~~~~k~~~~~~~p~~~~~~R~~~a~l~~~~~~~~~~~~~~~~~~~ll~g~~~~~~~~l~~~al~~ 214 (473)
.+++++++.++-.......|... ++. + ..+.+...+....+++++.+++++
T Consensus 3 ~~l~l~~a~~~e~~~~~~lK~s~-~~~---------------------------~-~~~~~~~~~~~~~~~~~~~~al~~ 53 (110)
T 3b5d_A 3 PYIYLGGAILAEVIGTTLMKFSE-GFT---------------------------R-LWPSVGTIICYCASFWLLAQTLAY 53 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc-Ccc---------------------------h-HHHHHHHHHHHHHHHHHHHHHHHh
Confidence 45667777777777777778642 211 0 112234445567888999999999
Q ss_pred cchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 215 SDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 215 ~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
.|.+.+..+ ..+.|+++.++++ ++||++++.+++|+++.++||+++...
T Consensus 54 ~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~ 104 (110)
T 3b5d_A 54 IPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (110)
T ss_pred CChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 999999888 7999999999999 899999999999999999999988654
No 4
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.40 E-value=4.7e-07 Score=77.32 Aligned_cols=68 Identities=18% Similarity=0.211 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHhhccchhHHHHH-HHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhheeecC
Q 011986 196 ELGLWVSLGYLMQALGLETSDAGRASFI-SMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVALLESS 263 (473)
Q Consensus 196 l~g~~~~~~~~l~~~al~~~~~~~asvi-~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~li~~~ 263 (473)
+..+...++++++++++++.+++.+..+ .++.|+++.++++ ++||++++.+++|+++.++||+++...
T Consensus 35 l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 35 GTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp HHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 4445577889999999999999999999 8999999999999 899999999999999999999988653
No 5
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A
Probab=44.96 E-value=77 Score=31.07 Aligned_cols=25 Identities=4% Similarity=-0.177 Sum_probs=16.8
Q ss_pred HhhHHHHHHHHHHHHHHhhcCCCCC
Q 011986 405 ATGWLGAALVLVGSLTVQIFGSSSP 429 (473)
Q Consensus 405 ~~~~~G~~lIl~g~~l~~~~~~~~~ 429 (473)
...+.|.+++++|..++...+++++
T Consensus 408 ~~~~~~~~~~~~g~~~y~~~~~~~~ 432 (445)
T 3l1l_A 408 KEVMWSFVTLMVITAMYALNYNRLH 432 (445)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 3455688888888877776555443
No 6
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=41.85 E-value=2.4e+02 Score=26.91 Aligned_cols=15 Identities=13% Similarity=0.082 Sum_probs=8.7
Q ss_pred ChHHHHHHHHHHHHH
Q 011986 161 DPSAFTVVRFALSAI 175 (473)
Q Consensus 161 ~p~~~~~~R~~~a~l 175 (473)
+...+...|.+.+..
T Consensus 118 ~~~~l~~~~~l~G~~ 132 (451)
T 1pw4_A 118 SIAVMFVLLFLCGWF 132 (451)
T ss_dssp SSSHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHH
Confidence 444566667666543
No 7
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=39.51 E-value=2.9e+02 Score=27.21 Aligned_cols=61 Identities=11% Similarity=0.129 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHH-------HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHH
Q 011986 353 ALYTGIFSTGLCLWIEMA-------AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALV 414 (473)
Q Consensus 353 ll~lg~~~~~~~~~l~~~-------al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lI 414 (473)
.+.+|+++..+.+....+ -++.-++.-+-.+-.+-=+++.+..-+ |....+..|++|.+.+
T Consensus 262 A~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~gl-fa~~~~~~Ql~g~~~~ 329 (407)
T 3b9w_A 262 AFVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAIL-IVPGIAVAQLTGIGIT 329 (407)
T ss_dssp HHHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHH-HSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHH-HccCCcHHHHHHHHHH
Confidence 355566666565544321 134456665555555555666655533 4433455788887775
No 8
>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*
Probab=27.45 E-value=4.5e+02 Score=25.80 Aligned_cols=16 Identities=13% Similarity=-0.035 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 011986 198 GLWVSLGYLMQALGLE 213 (473)
Q Consensus 198 g~~~~~~~~l~~~al~ 213 (473)
.++.-++++.|+-++.
T Consensus 184 t~lLW~GWfGFN~Gl~ 199 (407)
T 3b9w_A 184 SMVLWLFWPSFATAIV 199 (407)
T ss_dssp HHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhhhhhhc
Confidence 4445678888888854
No 9
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=25.71 E-value=45 Score=24.27 Aligned_cols=20 Identities=15% Similarity=0.200 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHhhcCCC
Q 011986 408 WLGAALVLVGSLTVQIFGSS 427 (473)
Q Consensus 408 ~~G~~lIl~g~~l~~~~~~~ 427 (473)
+.++++.++|++++...|-+
T Consensus 25 ifA~vLfi~GI~iilS~kcr 44 (74)
T 2zxe_G 25 IVAAVLCVIGIIILLAGKCR 44 (74)
T ss_dssp HHHHHHHHHHHHHHTTTC--
T ss_pred hhHHHHHHHHHHHHHcCccc
Confidence 34666777777776655433
No 10
>4dx5_A Acriflavine resistance protein B; multidrug efflux protein, membrane protein, transpor; HET: LMT OCT D10 HEX D12 MIY C14 LMU DD9 UND GOL; 1.90A {Escherichia coli} PDB: 2hrt_A* 2gif_A* 4dx7_A* 4dx6_A* 3noc_A* 1oy6_A* 1oy9_A* 1oyd_A* 1oy8_A* 1oye_A 2rdd_A* 2w1b_A* 3d9b_A 2i6w_A* 3nog_A* 1t9x_A* 1t9t_A* 1t9v_A* 1t9w_A* 1t9u_A* ...
Probab=14.65 E-value=4.6e+02 Score=29.15 Aligned_cols=52 Identities=15% Similarity=-0.077 Sum_probs=32.0
Q ss_pred HHHHHHHhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHH
Q 011986 365 LWIEMAAMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLV 416 (473)
Q Consensus 365 ~~l~~~al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~ 416 (473)
+.+.....+........++...--+.+.+.+..++|..++...++|++++++
T Consensus 885 ~l~L~~~f~s~~~~l~~l~~i~~~~~~~~~~l~~~g~~l~~~~~~g~i~l~G 936 (1057)
T 4dx5_A 885 FLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIG 936 (1057)
T ss_dssp HHHHHHHHTCSSTHHHHHTTHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHCCCccHHHHHHHHHHHH
Confidence 3333334555544444444444444556666677899999999998776544
Done!