Query 011986
Match_columns 473
No_of_seqs 249 out of 1672
Neff 8.4
Searched_HMMs 13730
Date Mon Mar 25 19:21:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011986.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/011986hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 20.0 48 0.0035 17.2 2.7 18 269-286 3-20 (27)
2 d1pw4a_ f.38.1.1 (A:) Glycerol 15.0 3.3E+02 0.024 23.1 14.4 17 408-424 188-204 (447)
3 d1ql3a_ a.3.1.1 (A:) Cytochrom 11.2 18 0.0013 26.1 -0.7 11 36-46 9-20 (99)
4 d2r6gf1 e.70.1.1 (F:13-260) Ma 10.5 3.4E+02 0.024 22.5 7.5 61 194-258 5-66 (248)
5 d1cxca_ a.3.1.1 (A:) Cytochrom 8.2 23 0.0017 26.3 -1.3 12 36-47 11-23 (124)
6 d1iwga7 f.35.1.1 (A:7-37,A:331 8.0 3.9E+02 0.028 20.8 6.8 49 371-419 59-107 (199)
7 d3c2ca_ a.3.1.1 (A:) Cytochrom 7.1 29 0.0021 25.1 -1.2 12 36-47 10-22 (112)
8 d1qn2a_ a.3.1.1 (A:) Cytochrom 6.6 33 0.0024 24.7 -1.1 11 36-46 10-21 (99)
9 d1jdla_ a.3.1.1 (A:) Cytochrom 6.4 32 0.0023 25.6 -1.3 12 36-47 9-21 (118)
10 d2a4ha1 c.47.1.23 (A:62-178) S 6.4 76 0.0055 23.5 1.0 14 36-49 15-28 (117)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=20.03 E-value=48 Score=17.23 Aligned_cols=18 Identities=17% Similarity=0.360 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 011986 269 VGDLLNFLSAVFFGIHML 286 (473)
Q Consensus 269 ~G~~laL~aal~~a~~~i 286 (473)
+|.+.+-+++++|+.|.-
T Consensus 3 lgli~~tl~glf~aayqq 20 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQ 20 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeehHHHHHHHHHHHHHH
Confidence 467777888888888764
No 2
>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}
Probab=14.99 E-value=3.3e+02 Score=23.15 Aligned_cols=17 Identities=12% Similarity=0.192 Sum_probs=7.6
Q ss_pred HHHHHHHHHHHHHHhhc
Q 011986 408 WLGAALVLVGSLTVQIF 424 (473)
Q Consensus 408 ~~G~~lIl~g~~l~~~~ 424 (473)
+.+...++.+++.....
T Consensus 188 ~~~~~~~~~~~~~~~~~ 204 (447)
T d1pw4a_ 188 MPAFCAILVALFAFAMM 204 (447)
T ss_dssp HHHHHHHHHHHHHHHHC
T ss_pred hhhhhHHHHHHHHHHhc
Confidence 33444444444444433
No 3
>d1ql3a_ a.3.1.1 (A:) Cytochrome c552 {Paracoccus denitrificans [TaxId: 266]}
Probab=11.15 E-value=18 Score=26.15 Aligned_cols=11 Identities=36% Similarity=1.014 Sum_probs=8.2
Q ss_pred eeEEe-eccccc
Q 011986 36 IFICC-QCHYVN 46 (473)
Q Consensus 36 ~~~~~-~~~~~~ 46 (473)
||.+| .||..+
T Consensus 9 ~f~~C~~CHs~~ 20 (99)
T d1ql3a_ 9 VFGKCKACHKLD 20 (99)
T ss_dssp HGGGTTTTCCSS
T ss_pred HHHHHHhhCCcC
Confidence 46678 899875
No 4
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=10.55 E-value=3.4e+02 Score=22.45 Aligned_cols=61 Identities=16% Similarity=-0.076 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHH-HhcCcCchHHHHHHHHHHHHhh
Q 011986 194 GFELGLWVSLGYLMQALGLETSDAGRASFISMFTVIVVPLLDG-MLGAIVPARTWFGAVMSILGVA 258 (473)
Q Consensus 194 ~ll~g~~~~~~~~l~~~al~~~~~~~asvi~~l~Pl~~~ll~~-~l~er~s~~~~~g~~lal~GV~ 258 (473)
++++|++..+..++....+....-..+.++ -+.+.++.+ ++.+|.-+.+++-=.+.++.+.
T Consensus 5 ~~ll~l~~a~~~~~~~~~~~~~~~~~a~~~----~~~~~~~~~vy~s~r~~p~kyi~PG~~~l~~F 66 (248)
T d2r6gf1 5 WSVLGLLGLLVGYLVVLMYAQGEYLFAITT----LILSSAGLYIFANRKAYAWRYVYPGMAGMGLF 66 (248)
T ss_dssp HHHHHHHHHHHHHTHHHHHGGGCHHHHHHH----HHHHHHHHHHHSSSCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcchHHHHHHH----HHHHHheEEEEEccCccceehhhhHHHHHHHH
Confidence 345555555555444444444443333322 223444445 5666666666654444444433
No 5
>d1cxca_ a.3.1.1 (A:) Cytochrome c2 {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=8.24 E-value=23 Score=26.31 Aligned_cols=12 Identities=33% Similarity=0.819 Sum_probs=8.7
Q ss_pred eeEEe-ecccccC
Q 011986 36 IFICC-QCHYVNR 47 (473)
Q Consensus 36 ~~~~~-~~~~~~~ 47 (473)
||.+| .||..+.
T Consensus 11 vF~~Ca~CH~i~~ 23 (124)
T d1cxca_ 11 AFNQCQTCHVIVD 23 (124)
T ss_dssp HGGGGGGTCCEEC
T ss_pred HHHhhHhhCCccc
Confidence 46678 8998664
No 6
>d1iwga7 f.35.1.1 (A:7-37,A:331-498) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=7.97 E-value=3.9e+02 Score=20.81 Aligned_cols=49 Identities=14% Similarity=0.017 Sum_probs=33.8
Q ss_pred HhcccChhHHHHHhhhHHHHHHHHHHHHhcCcccHhhHHHHHHHHHHHH
Q 011986 371 AMRDVSATETAIIYGLEPVWGAGFAWFILGERWGATGWLGAALVLVGSL 419 (473)
Q Consensus 371 al~~~~a~~~s~l~~l~pv~a~l~~~il~gE~~~~~~~~G~~lIl~g~~ 419 (473)
.++...+.....+...-.++..+....++|..++.....+.+++++..+
T Consensus 59 ~~rs~~~~li~~~~i~~~i~~~~~~m~~~g~~l~~~s~~~~~i~igi~v 107 (199)
T d1iwga7 59 FLQNFRATLIPTIAVPVVLLGTFAVLAAFGFSINTLTMFGMVLAIGLLV 107 (199)
T ss_dssp TCCCTTTTTHHHHHHHHHHHHHHHHHHTTTCCSCHHHHHHHHHHHHHHH
T ss_pred HHhhhhhhheeccccchhhHHHHHHhhcCCCchHHHHHHHHHHHHHHhc
Confidence 3565666666555555566666666677899999988888777766654
No 7
>d3c2ca_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum rubrum [TaxId: 1085]}
Probab=7.11 E-value=29 Score=25.07 Aligned_cols=12 Identities=25% Similarity=0.725 Sum_probs=8.1
Q ss_pred eeEEe-ecccccC
Q 011986 36 IFICC-QCHYVNR 47 (473)
Q Consensus 36 ~~~~~-~~~~~~~ 47 (473)
||..| .||..+.
T Consensus 10 lf~~C~~CH~~~~ 22 (112)
T d3c2ca_ 10 VSKKCLACHTFDQ 22 (112)
T ss_dssp HGGGGTTTCCCST
T ss_pred HHHHHHHhCCCcC
Confidence 45567 8998653
No 8
>d1qn2a_ a.3.1.1 (A:) Cytochrome ch {Methylobacterium extorquens [TaxId: 408]}
Probab=6.59 E-value=33 Score=24.71 Aligned_cols=11 Identities=36% Similarity=0.929 Sum_probs=8.1
Q ss_pred eeEEe-eccccc
Q 011986 36 IFICC-QCHYVN 46 (473)
Q Consensus 36 ~~~~~-~~~~~~ 46 (473)
||.+| .||...
T Consensus 10 lF~~C~~CH~i~ 21 (99)
T d1qn2a_ 10 AFAPCKACHNFE 21 (99)
T ss_dssp HTGGGGGTCCSS
T ss_pred HHHhHHHHcCCc
Confidence 46678 899764
No 9
>d1jdla_ a.3.1.1 (A:) Cytochrome c2 {Rhodospirillum centenum [TaxId: 34018]}
Probab=6.43 E-value=32 Score=25.61 Aligned_cols=12 Identities=42% Similarity=0.974 Sum_probs=8.5
Q ss_pred eeEEe-ecccccC
Q 011986 36 IFICC-QCHYVNR 47 (473)
Q Consensus 36 ~~~~~-~~~~~~~ 47 (473)
||..| .||....
T Consensus 9 vF~~C~~CH~v~~ 21 (118)
T d1jdla_ 9 VFKKCMACHRVGP 21 (118)
T ss_dssp HGGGTTTTCCCST
T ss_pred HHHHHHHhCCcCC
Confidence 56678 8998643
No 10
>d2a4ha1 c.47.1.23 (A:62-178) Selenoprotein sep15 {Drosophila melanogaster [TaxId: 7227]}
Probab=6.41 E-value=76 Score=23.51 Aligned_cols=14 Identities=29% Similarity=0.873 Sum_probs=12.5
Q ss_pred eeEEeecccccCCc
Q 011986 36 IFICCQCHYVNRPH 49 (473)
Q Consensus 36 ~~~~~~~~~~~~~~ 49 (473)
+.++|.|+..++|-
T Consensus 15 ilEvC~ckL~~~Pe 28 (117)
T d2a4ha1 15 ILEVCTCKFRAYPQ 28 (117)
T ss_dssp EEECCSCTTTTCTT
T ss_pred EEEEehhhhccCHH
Confidence 67999999999997
Done!