Your job contains 1 sequence.
>011992
MEAGRNLLSSPPSFPSRTRVKHSLSSSASSSSSSSVLMHNEQSAPAVASVPTSSVARHFP
TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF
LHWPDLWNLSPPMKRGEDPSVSLTMQSLSNDTEESVDAEPFDAVALARKALSASKEAASL
AENPKLNGAEFTDISLTSSLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRK
ASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFG
REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ
EGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLR
FGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADLLI
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 011992
(473 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2057996 - symbol:SIGF "AT2G36990" species:3702... 583 1.2e-56 1
UNIPROTKB|Q84LK8 - symbol:SIG6 "Sig6" species:39947 "Oryz... 395 1.1e-36 1
TAIR|locus:2025650 - symbol:SIG2 "AT1G08540" species:3702... 338 3.8e-30 1
UNIPROTKB|Q59563 - symbol:mysB "RNA polymerase sigma fact... 172 2.7e-23 2
TIGR_CMR|DET_0551 - symbol:DET_0551 "RNA polymerase sigma... 166 2.2e-21 3
TIGR_CMR|VC_0534 - symbol:VC_0534 "RNA polymerase sigma f... 175 1.6e-20 2
TIGR_CMR|CPS_1079 - symbol:CPS_1079 "RNA polymerase sigma... 164 8.8e-18 2
TIGR_CMR|CBU_1669 - symbol:CBU_1669 "RNA polymerase sigma... 168 1.2e-17 2
TIGR_CMR|SPO_1750 - symbol:SPO_1750 "RNA polymerase sigma... 148 2.2e-17 3
UNIPROTKB|Q9KUK1 - symbol:VC_0517 "RNA polymerase sigma f... 155 3.5e-17 2
TIGR_CMR|VC_0517 - symbol:VC_0517 "RNA polymerase sigma f... 155 3.5e-17 2
UNIPROTKB|P00579 - symbol:rpoD species:83333 "Escherichia... 148 8.3e-17 3
TIGR_CMR|SO_1284 - symbol:SO_1284 "RNA polymerase sigma-7... 147 4.5e-16 3
UNIPROTKB|O48655 - symbol:rsigA "Plastid RNA polymerase s... 225 8.2e-16 1
TIGR_CMR|CPS_4334 - symbol:CPS_4334 "RNA polymerase sigma... 147 3.7e-15 3
TAIR|locus:2173249 - symbol:SIG4 "AT5G13730" species:3702... 148 1.1e-14 2
TIGR_CMR|GSU_0655 - symbol:GSU_0655 "RNA polymerase sigma... 129 2.4e-14 2
TIGR_CMR|SPO_0406 - symbol:SPO_0406 "RNA polymerase sigma... 135 4.6e-14 2
TIGR_CMR|GSU_1525 - symbol:GSU_1525 "RNA polymerase sigma... 173 2.3e-13 2
TIGR_CMR|CHY_2056 - symbol:CHY_2056 "RNA polymerase sigma... 118 1.0e-12 2
TIGR_CMR|BA_4043 - symbol:BA_4043 "RNA polymerase sigma-2... 126 6.2e-12 2
TIGR_CMR|SO_3432 - symbol:SO_3432 "RNA polymerase sigma f... 182 1.6e-11 1
TIGR_CMR|BA_4515 - symbol:BA_4515 "RNA polymerase sigma-4... 182 2.6e-11 1
TIGR_CMR|CHY_0617 - symbol:CHY_0617 "RNA polymerase sigma... 127 4.2e-11 2
TAIR|locus:2010871 - symbol:SIGA "AT1G64860" species:3702... 180 8.8e-11 1
TIGR_CMR|GSU_3089 - symbol:GSU_3089 "RNA polymerase sigma... 180 1.1e-10 1
TIGR_CMR|NSE_0312 - symbol:NSE_0312 "RNA polymerase sigma... 170 2.2e-10 2
TIGR_CMR|CHY_0455 - symbol:CHY_0455 "RNA polymerase sigma... 173 2.7e-10 1
TAIR|locus:2084420 - symbol:SIGC "AT3G53920" species:3702... 175 4.0e-10 1
UNIPROTKB|P50511 - symbol:rpoH "RNA polymerase sigma-32 f... 165 9.1e-10 1
TIGR_CMR|VC_0150 - symbol:VC_0150 "RNA polymerase sigma-3... 165 9.1e-10 1
UNIPROTKB|P13445 - symbol:rpoS "RNA polymerase, sigma S (... 166 1.2e-09 1
TIGR_CMR|CPS_0161 - symbol:CPS_0161 "RNA polymerase sigma... 162 2.0e-09 1
UNIPROTKB|P0A602 - symbol:rpoD "RNA polymerase sigma fact... 168 2.1e-09 1
TAIR|locus:2167413 - symbol:SIGE "AT5G24120" species:3702... 167 2.6e-09 1
TIGR_CMR|CJE_1081 - symbol:CJE_1081 "RNA polymerase sigma... 160 4.8e-09 2
TIGR_CMR|CBU_1909 - symbol:CBU_1909 "RNA polymerase sigma... 158 6.2e-09 1
TIGR_CMR|CBU_1596 - symbol:CBU_1596 "RNA polymerase sigma... 165 6.9e-09 1
UNIPROTKB|P0AGB3 - symbol:rpoH species:83333 "Escherichia... 157 7.7e-09 1
TIGR_CMR|APH_0576 - symbol:APH_0576 "RNA polymerase sigma... 159 8.9e-09 3
TIGR_CMR|ECH_0760 - symbol:ECH_0760 "RNA polymerase sigma... 161 1.6e-08 1
TIGR_CMR|SO_4583 - symbol:SO_4583 "RNA polymerase sigma-3... 154 1.8e-08 1
UNIPROTKB|Q84JN3 - symbol:SIG5 "Os05g0586600 protein" spe... 155 5.2e-08 1
TIGR_CMR|BA_4042 - symbol:BA_4042 "RNA polymerase sigma-G... 147 7.8e-08 1
TIGR_CMR|ECH_0655 - symbol:ECH_0655 "RNA polymerase sigma... 109 1.1e-07 2
TIGR_CMR|CHY_2055 - symbol:CHY_2055 "RNA polymerase sigma... 111 1.1e-07 2
TIGR_CMR|CHY_1959 - symbol:CHY_1959 "RNA polymerase sigma... 138 8.6e-07 1
TIGR_CMR|SPO_1409 - symbol:SPO_1409 "RNA polymerase sigma... 130 1.1e-05 1
TIGR_CMR|APH_0759 - symbol:APH_0759 "RNA polymerase sigma... 127 2.3e-05 1
TIGR_CMR|NSE_0341 - symbol:NSE_0341 "RNA polymerase sigma... 126 2.9e-05 1
UNIPROTKB|O32728 - symbol:O32728 "RNA polymerase sigma fa... 115 0.00037 1
TIGR_CMR|BA_4294 - symbol:BA_4294 "RNA polymerase sigma-F... 115 0.00037 1
UNIPROTKB|P0AEM6 - symbol:fliA "RNA polymerase, sigma 28 ... 80 0.00051 2
TIGR_CMR|CHY_0143 - symbol:CHY_0143 "RNA polymerase sigma... 83 0.00079 2
>TAIR|locus:2057996 [details] [associations]
symbol:SIGF "AT2G36990" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISM] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
[GO:0006352 "DNA-dependent transcription, initiation" evidence=TAS]
[GO:0009507 "chloroplast" evidence=IDA] [GO:0009536 "plastid"
evidence=IDA] [GO:0016987 "sigma factor activity" evidence=ISS;IDA]
[GO:0071483 "cellular response to blue light" evidence=IEP]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA;IMP] [GO:0071482 "cellular response to light stimulus"
evidence=IMP] [GO:0090351 "seedling development" evidence=IMP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009902
"chloroplast relocation" evidence=RCA] [GO:0009965 "leaf
morphogenesis" evidence=RCA] [GO:0010027 "thylakoid membrane
organization" evidence=RCA] [GO:0016117 "carotenoid biosynthetic
process" evidence=RCA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=RCA]
[GO:0030154 "cell differentiation" evidence=RCA] [GO:0034660 "ncRNA
metabolic process" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0009507 GO:GO:0045893
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AC006922
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 GO:GO:0090351
eggNOG:COG0568 HSSP:Q9EZJ8 GO:GO:0001053 InterPro:IPR016262
PIRSF:PIRSF000767 GO:GO:0071483 EMBL:AB029916 EMBL:AJ277389
EMBL:AY059768 EMBL:AY091182 EMBL:AJ250812 IPI:IPI00546728
PIR:B84787 PIR:T52653 RefSeq:NP_565856.1 UniGene:At.1453
ProteinModelPortal:Q9LD95 SMR:Q9LD95 IntAct:Q9LD95 STRING:Q9LD95
PaxDb:Q9LD95 PRIDE:Q9LD95 EnsemblPlants:AT2G36990.1 GeneID:818273
KEGG:ath:AT2G36990 GeneFarm:23 TAIR:At2g36990 InParanoid:Q9LD95
OMA:HIAKQYQ PhylomeDB:Q9LD95 ProtClustDB:CLSN2688741
Genevestigator:Q9LD95 Uniprot:Q9LD95
Length = 547
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 155/376 (41%), Positives = 211/376 (56%)
Query: 85 SQATSDSRNIETEAFFVEEKNSGDLDQLVQD--LEHQFLHWPDLWNL--SPPMKRGEDPS 140
S A D R T +E + +L +D E Q LH LWNL SP + P+
Sbjct: 71 SHALRDDR---TSQLTLERRQFDELVSSREDEKFEQQLLHSTGLWNLLISPLTSETKLPA 127
Query: 141 VSLTMQSLSNDTEESVDAEPFDXXXXXXXXXXXXXXXXXXXXNPKLNGAE-FTD-ISLTS 198
V + L+ DAE D + + N ++ D +S +S
Sbjct: 128 V---VSPLA-------DAELCDVVALAQKALSASKQAALLVDDTEANPSDNIKDSLSTSS 177
Query: 199 SLGYPLEEVKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLR 258
S+ P E+ R LERR+K R+ K + E Y +K S KKK +G D +D L+
Sbjct: 178 SMSLP-EKGNIVRSKRQLERRAKNRRAPKSNDVDDEGYVPQKTSAKKKYKQGADNDDALQ 236
Query: 259 LFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRD 318
LFLWGPET++LLTA EE ELI+ IQ L++LEK K+KL+SQ G EPT+ EWA+A+G+S
Sbjct: 237 LFLWGPETKQLLTAKEEAELISHIQHLLKLEKVKTKLESQNGCEPTIGEWAEAMGISSPV 296
Query: 319 LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAG 378
LKS++H G SSREKLI ANLRLVVH+AKQYQ RG++ DLLQEGSMGLMKSVEKFKPQ+G
Sbjct: 297 LKSDIHRGRSSREKLITANLRLVVHIAKQYQNRGLNFQDLLQEGSMGLMKSVEKFKPQSG 356
Query: 379 CRFANTGVEIPDISVQKQLMRQH--VR---NLLTLLNPKERCIVRLRFGIEDGKPK-SLS 432
CRFA S++K + + +R N+ LL R + +++G + S
Sbjct: 357 CRFATYAYWWIRQSIRKSIFQNSRTIRLPENVYMLLGKVSEA--R-KTCVQEGNYRPSKE 413
Query: 433 EVGNIFGLSKERVRQL 448
E+ G+S E++ +L
Sbjct: 414 ELAGHVGVSTEKLDKL 429
Score = 313 (115.2 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 60/91 (65%), Positives = 76/91 (83%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
++G+E P +SV KQLMR HVRNLL +L+PKER I++LRFGI+ GK +SLSE+G I+GLSK
Sbjct: 457 DSGIETPTMSVGKQLMRNHVRNLLNVLSPKERRIIKLRFGIDGGKQRSLSEIGEIYGLSK 516
Query: 443 ERVRQLESRALYRLKQSLGGKASYGYADLLI 473
ERVRQLESRALYRLKQ++ + YADLL+
Sbjct: 517 ERVRQLESRALYRLKQNMNSHGLHAYADLLV 547
Score = 181 (68.8 bits), Expect = 2.6e-44, Sum P(2) = 2.6e-44
Identities = 49/143 (34%), Positives = 67/143 (46%)
Query: 1 MEAGRNLLSSPPSFPSRTRVKHXXXXXXXXXXXXXVLMHNEQXXXXXXXXXXXXXXRHFP 60
MEA RNL+SS PSF ++T +K V++H++ RHFP
Sbjct: 1 MEATRNLVSSSPSFQTKTHLK-----SSYSSPSSVVMLHDQTTTPVVNSRHLNSLSRHFP 55
Query: 61 TSVLLQEQRDEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNSGDLDQLVQDLEHQF 120
SVL QE R+E RPL H ++D+TSQ T + R + V + + E Q
Sbjct: 56 ASVLSQEPREESRPLSHALRDDRTSQLTLERRQFDE---LVSSRED-------EKFEQQL 105
Query: 121 LHWPDLWNL--SPPMKRGEDPSV 141
LH LWNL SP + P+V
Sbjct: 106 LHSTGLWNLLISPLTSETKLPAV 128
>UNIPROTKB|Q84LK8 [details] [associations]
symbol:SIG6 "Sig6" species:39947 "Oryza sativa Japonica
Group" [GO:0009536 "plastid" evidence=RCA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AP008214 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 HSSP:Q9EZJ8 InterPro:IPR016262 PIRSF:PIRSF000767
OMA:HIAKQYQ ProtClustDB:CLSN2688741 EMBL:AB096012 EMBL:AP005249
EMBL:AP005478 EMBL:AK099922 RefSeq:NP_001061343.1 UniGene:Os.27634
STRING:Q84LK8 EnsemblPlants:LOC_Os08g14450.1 GeneID:4345044
KEGG:osa:4345044 HOGENOM:HOG000070749 Uniprot:Q84LK8
Length = 572
Score = 395 (144.1 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 87/242 (35%), Positives = 142/242 (58%)
Query: 214 RFLERRSKKRKVSKPQVTNHETY--NSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLT 271
R LERRSK+R + + + NS+K KK + ++P +LFL ET + LT
Sbjct: 216 RLLERRSKRRYAPRASIADVSCSADNSKKKEKSKKYGRVLEPDEPFKLFLRDRETTEFLT 275
Query: 272 ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSRE 331
A EE L ++IQ L+++E+ KL+ Q GREPTL EWA+A+G+S ++L+S + +G RE
Sbjct: 276 AKEERHLFSKIQILMKIEEAHRKLEVQCGREPTLAEWAEAVGMSSKELQSSIRTGRRCRE 335
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDI 391
K+ +N RLV+HVA++Y+G G+ + DL+Q+G GLMK+ EKF P GCRF
Sbjct: 336 KMARSNFRLVIHVARKYEGYGLDIQDLVQDGCSGLMKTFEKFNPSKGCRFPTYAYWWIRQ 395
Query: 392 SVQKQLMRQ-HVRNLLTLLNPKERCIVRLRFG-IEDGKPKSLSEVGNIFGLSKERVRQLE 449
S++K + + + L + R + + R I +G+ + + V G++ E++ +L
Sbjct: 396 SIKKSIFKNSRLIRLPESVYALLRKVGKARMECIMEGEQPTNANVARRAGITIEKLAKLR 455
Query: 450 SR 451
++
Sbjct: 456 AK 457
Score = 231 (86.4 bits), Expect = 2.1e-16, P = 2.1e-16
Identities = 46/87 (52%), Positives = 66/87 (75%)
Query: 386 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERV 445
VE PD+SV + +MRQ VR+ L +L+P+E+ I+ RFGI DG+PK+L +G++FGLSKER+
Sbjct: 485 VEPPDLSVDRMMMRQQVRDFLGILSPREKEIIEHRFGIHDGEPKTLHVIGDMFGLSKERI 544
Query: 446 RQLESRALYRLKQSLGGKASYGYADLL 472
RQL++RAL +LK+S + Y DLL
Sbjct: 545 RQLQNRALEKLKRSASLQGFDVYFDLL 571
>TAIR|locus:2025650 [details] [associations]
symbol:SIG2 "AT1G08540" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP;IMP] [GO:0006352 "DNA-dependent transcription,
initiation" evidence=IDA;TAS] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0006399 "tRNA metabolic process"
evidence=IMP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0009637 "response to blue light"
evidence=IGI;RCA] [GO:0010114 "response to red light"
evidence=IEP;RCA] [GO:0006098 "pentose-phosphate shunt"
evidence=RCA] [GO:0006364 "rRNA processing" evidence=RCA]
[GO:0009902 "chloroplast relocation" evidence=RCA] [GO:0010027
"thylakoid membrane organization" evidence=RCA] [GO:0010218
"response to far red light" evidence=RCA] [GO:0016117 "carotenoid
biosynthetic process" evidence=RCA] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=RCA] [GO:0034660 "ncRNA metabolic process" evidence=RCA]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00716
EMBL:CP002684 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010114 GO:GO:0009658 EMBL:AC006932 GO:GO:0006399
EMBL:AC003981 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 UniGene:At.23349 HSSP:Q9EZJ8
GO:GO:0001053 EMBL:AB004293 EMBL:AB019943 EMBL:AB004820
EMBL:AF015543 EMBL:Y15362 EMBL:AK118947 EMBL:BT030346
IPI:IPI00546921 PIR:T00707 RefSeq:NP_172330.1
ProteinModelPortal:O22056 SMR:O22056 STRING:O22056 PRIDE:O22056
EnsemblPlants:AT1G08540.1 GeneID:837376 KEGG:ath:AT1G08540
TAIR:At1g08540 InParanoid:O22056 OMA:WIKQAVR PhylomeDB:O22056
ProtClustDB:CLSN2682814 Genevestigator:O22056 InterPro:IPR016262
PIRSF:PIRSF000767 Uniprot:O22056
Length = 572
Score = 338 (124.0 bits), Expect = 3.8e-30, P = 3.8e-30
Identities = 86/255 (33%), Positives = 138/255 (54%)
Query: 214 RFLERRSKKRKVSKPQVTNHETYNSRKASVKKKL-SEGFDRNDPLRLFLWGPETRKLLTA 272
R ER++++ K + + + + + KK+L ++ D NDPLR + KLLT
Sbjct: 216 RQTERKARRAKGLEKTASGIPSVKTGSSPKKKRLVAQEVDHNDPLRYLRMTTSSSKLLTV 275
Query: 273 DEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREK 332
EE EL A IQDL++LE+ +++L + GR+PT +WA A G+ + L+ +H G ++K
Sbjct: 276 REEHELSAGIQDLLKLERLQTELTERSGRQPTFAQWASAAGVDQKSLRQRIHHGTLCKDK 335
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDIS 392
+I +N+RLV+ +AK YQG G++L DL+QEG GL++ EKF G +F+ +
Sbjct: 336 MIKSNIRLVISIAKNYQGAGMNLQDLVQEGCRGLVRGAEKFDATKGFKFSTYAHWWIKQA 395
Query: 393 VQKQLMRQH--VRNLLTLLNPKERCI-VRLRFGIEDGK-PKSLSEVGNIFGLSKERVRQ- 447
V+K L Q +R ++ R R + E GK PK+ E+ GLS +R+
Sbjct: 396 VRKSLSDQSRMIRLPFHMVEATYRVKEARKQLYSETGKHPKN-EEIAEATGLSMKRLMAV 454
Query: 448 -LESRALYRLKQSLG 461
L + L Q +G
Sbjct: 455 LLSPKPPRSLDQKIG 469
Score = 162 (62.1 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 32/68 (47%), Positives = 49/68 (72%)
Query: 390 DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLE 449
DI + K+ MRQ + +L L +E+ ++R RFG+EDG+ K+L E+G + G+S+ERVRQ+E
Sbjct: 490 DILI-KEFMRQDLDKVLDSLGTREKQVIRWRFGMEDGRMKTLQEIGEMMGVSRERVRQIE 548
Query: 450 SRALYRLK 457
S A +LK
Sbjct: 549 SSAFRKLK 556
>UNIPROTKB|Q59563 [details] [associations]
symbol:mysB "RNA polymerase sigma factor" species:1773
"Mycobacterium tuberculosis" [GO:0001666 "response to hypoxia"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0009408 "response to heat"
evidence=IEP] [GO:0009410 "response to xenobiotic stimulus"
evidence=IEP] [GO:0016987 "sigma factor activity" evidence=IGI]
[GO:0019217 "regulation of fatty acid metabolic process"
evidence=IDA] [GO:0040007 "growth" evidence=IMP] [GO:0043175 "RNA
polymerase core enzyme binding" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0050708 "regulation of protein secretion" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0005829 GO:GO:0005886 GO:GO:0040007
GO:GO:0045893 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0001666
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0019217 GO:GO:0009408 GO:GO:0009410 GO:GO:0050708
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0043175 EMBL:U10059 KO:K03087 HSSP:Q9EZJ8
EMBL:AL123456 PIR:JC5011 RefSeq:NP_217226.1 RefSeq:NP_337285.1
RefSeq:YP_006516154.1 SMR:Q59563 EnsemblBacteria:EBMYCT00000003840
EnsemblBacteria:EBMYCT00000072906 GeneID:13319437 GeneID:888580
GeneID:925516 KEGG:mtc:MT2783 KEGG:mtu:Rv2710 KEGG:mtv:RVBD_2710
PATRIC:18127862 TubercuList:Rv2710 OMA:DHARDPV ProtClustDB:PRK07921
Uniprot:Q59563
Length = 323
Score = 172 (65.6 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 36/79 (45%), Positives = 56/79 (70%)
Query: 305 LIEWAKAIGLSC-RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363
L+E K +G + RDL + + G ++R L+ ANLRLVV +AK+Y GRG+ L DL+QEG+
Sbjct: 61 LLETRKRLGENRKRDLAAVVRDGEAARRHLLEANLRLVVSLAKRYTGRGMPLLDLIQEGN 120
Query: 364 MGLMKSVEKFKPQAGCRFA 382
+GL++++EKF G +F+
Sbjct: 121 LGLIRAMEKFDYTKGFKFS 139
Score = 162 (62.1 bits), Expect = 2.7e-23, Sum P(2) = 2.7e-23
Identities = 27/66 (40%), Positives = 50/66 (75%)
Query: 392 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451
+V +L+ +R++L L+ +E ++RLRFG++DG+P++L ++G +FGLS+ERVRQ+E
Sbjct: 245 AVIAELLHTDIRSVLATLDEREHQVIRLRFGLDDGQPRTLDQIGKLFGLSRERVRQIERD 304
Query: 452 ALYRLK 457
+ +L+
Sbjct: 305 VMSKLR 310
Score = 45 (20.9 bits), Expect = 6.6e-10, Sum P(2) = 6.6e-10
Identities = 15/49 (30%), Positives = 23/49 (46%)
Query: 278 LIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL-HS 325
L+ Q+ L R+++E + GRE T E A G+ + L HS
Sbjct: 167 LVEQVNKLARIKRE---MHQHLGREATDEELAAESGIPIDKINDLLEHS 212
Score = 39 (18.8 bits), Expect = 2.8e-09, Sum P(2) = 2.8e-09
Identities = 7/20 (35%), Positives = 12/20 (60%)
Query: 188 GAEFTDISLTSSLGYPLEEV 207
G E TD L + G P++++
Sbjct: 186 GREATDEELAAESGIPIDKI 205
>TIGR_CMR|DET_0551 [details] [associations]
symbol:DET_0551 "RNA polymerase sigma factor RpoD"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_181295.1 ProteinModelPortal:Q3Z904 SMR:Q3Z904
STRING:Q3Z904 GeneID:3230115 KEGG:det:DET0551 PATRIC:21608171
OMA:FISHLER ProtClustDB:CLSK935624
BioCyc:DETH243164:GJNF-551-MONOMER Uniprot:Q3Z904
Length = 520
Score = 166 (63.5 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 29/69 (42%), Positives = 53/69 (76%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
PD + +QL+++ + +L L P+ER +++LRFG+EDG+ ++L EVG F +++ER+RQ+
Sbjct: 440 PD-AASRQLLKEQIDTVLGSLTPRERRVLQLRFGLEDGRSRTLEEVGKEFNVTRERIRQI 498
Query: 449 ESRALYRLK 457
E++AL +L+
Sbjct: 499 EAKALRKLR 507
Score = 142 (55.0 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 31/61 (50%), Positives = 45/61 (73%)
Query: 322 ELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
E+ + + R LI ANLRLVV VAK++ GRG+ L DL+QEG++GL+++VEKF G +F
Sbjct: 277 EIDAKRAERH-LIQANLRLVVSVAKKHIGRGMPLLDLIQEGNIGLIRAVEKFDFHRGFKF 335
Query: 382 A 382
+
Sbjct: 336 S 336
Score = 57 (25.1 bits), Expect = 2.2e-21, Sum P(3) = 2.2e-21
Identities = 14/54 (25%), Positives = 31/54 (57%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
+DP+R++L LL+A++E L ++++ R+ + + + + GR P+ E
Sbjct: 98 DDPVRMYLHEIGRVPLLSAEDEKTLAKKMEEGKRIREIRQECLEKRGRYPSAAE 151
Score = 38 (18.4 bits), Expect = 9.8e-09, Sum P(2) = 9.8e-09
Identities = 10/36 (27%), Positives = 18/36 (50%)
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
+ ++ + +L +L + GREPT E A + L
Sbjct: 362 VHMVETINKLLSISRQLSQKLGREPTPDEIAVEMDL 397
>TIGR_CMR|VC_0534 [details] [associations]
symbol:VC_0534 "RNA polymerase sigma factor RpoS"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03087 TIGRFAMs:TIGR02394 EMBL:AF000945 PIR:A82312
RefSeq:NP_230185.1 ProteinModelPortal:O51804 SMR:O51804
DNASU:2615203 GeneID:2615203 KEGG:vch:VC0534 PATRIC:20080172
OMA:KWLDELN ProtClustDB:CLSK874000 Uniprot:O51804
Length = 335
Score = 175 (66.7 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 49/156 (31%), Positives = 85/156 (54%)
Query: 249 EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEW 308
E FD D L ET LT+DEE + + +R E + S +S + L E
Sbjct: 11 EEFDFEDEALEVL---ETDAELTSDEELVAVEGASEDVREEFDASA-KSLDATQMYLSEI 66
Query: 309 AKAIGLSCRD----LKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364
+ L+ + + L ++R+++I +NLRLVV ++++Y RG++L DL++EG++
Sbjct: 67 GFSPLLTAEEEVLYARRALRGDEAARKRMIESNLRLVVKISRRYSNRGLALLDLIEEGNL 126
Query: 365 GLMKSVEKFKPQAGCRFANTGVEIPDISVQKQLMRQ 400
GL+++VEKF P+ G RF+ ++++ LM Q
Sbjct: 127 GLIRAVEKFDPERGFRFSTYATWWIRQTIERALMNQ 162
Score = 133 (51.9 bits), Expect = 1.6e-20, Sum P(2) = 1.6e-20
Identities = 28/72 (38%), Positives = 45/72 (62%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
P+ S Q +R+ + N L LNPK++ ++ RFG+ +P +L EVG L++ERVRQ+
Sbjct: 247 PEFSTQDDDIRESLLNWLDELNPKQKEVLARRFGLLGYEPSTLEEVGREINLTRERVRQI 306
Query: 449 ESRALYRLKQSL 460
+ L RL++ L
Sbjct: 307 QVEGLRRLREIL 318
>TIGR_CMR|CPS_1079 [details] [associations]
symbol:CPS_1079 "RNA polymerase sigma factor RpoS"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000083 GenomeReviews:CP000083_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03087 TIGRFAMs:TIGR02394
OMA:KWLDELN RefSeq:YP_267823.1 ProteinModelPortal:Q487E2 SMR:Q487E2
STRING:Q487E2 GeneID:3519032 KEGG:cps:CPS_1079 PATRIC:21465429
BioCyc:CPSY167879:GI48-1161-MONOMER Uniprot:Q487E2
Length = 296
Score = 164 (62.8 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 31/78 (39%), Positives = 53/78 (67%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L SR+++I +NLRLVV +A++Y RG+ L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 50 LKGDEPSRKRMIESNLRLVVKIARRYNNRGLPLLDLIEEGNLGLIRAVEKFDPERGFRFS 109
Query: 383 NTGVEIPDISVQKQLMRQ 400
++++ +M Q
Sbjct: 110 TYATWWIRQTIERAIMNQ 127
Score = 116 (45.9 bits), Expect = 8.8e-18, Sum P(2) = 8.8e-18
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
P+ +Q + M ++ + L LN K+R ++ RFG+ + +L VG GL++ERVRQ+
Sbjct: 212 PESDLQSEDMSNNIIHWLNELNTKQREVLARRFGLLGYEASTLENVGREIGLTRERVRQI 271
Query: 449 ESRALYRLKQSL 460
+ AL RL+ L
Sbjct: 272 QVEALKRLRDIL 283
>TIGR_CMR|CBU_1669 [details] [associations]
symbol:CBU_1669 "RNA polymerase sigma factor RpoS"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE016828 GenomeReviews:AE016828_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:P00579 EMBL:AF244357
RefSeq:NP_820651.1 ProteinModelPortal:Q9KI19 SMR:Q9KI19
PRIDE:Q9KI19 GeneID:1209580 KEGG:cbu:CBU_1669 PATRIC:17932081
KO:K03087 OMA:HISAQAT ProtClustDB:CLSK914949
BioCyc:CBUR227377:GJ7S-1641-MONOMER TIGRFAMs:TIGR02394
Uniprot:Q9KI19
Length = 352
Score = 168 (64.2 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 56/186 (30%), Positives = 97/186 (52%)
Query: 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
+K+ KP + + + K S KK + D +F +T+K T E+ EL A
Sbjct: 15 KKIKKP--SKRKIKKTAKKSRPKKPIKASDHG---LIFA---KTKKETTEKEDAEL-ANA 65
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLS-CRDLKSEL------HSGN-SSREKLI 334
+ K K + +++ +PT I + + +G + K EL H G+ +R+++I
Sbjct: 66 K-----AKTKKRRETR-SSDPTQI-YLRELGFQPLLNAKEELKIARRVHKGDPKARKQMI 118
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQ 394
ANLRLVV +A+ Y RG+ DL++EG++GL+ +VEKF P+ G RF+ +++
Sbjct: 119 EANLRLVVKIARHYVNRGLPFLDLIEEGNLGLLTAVEKFDPERGFRFSTYATWWIRQTIE 178
Query: 395 KQLMRQ 400
+ +M Q
Sbjct: 179 RAIMNQ 184
Score = 115 (45.5 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 24/68 (35%), Positives = 41/68 (60%)
Query: 393 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452
+Q ++ H+ L L+ + R +V LRFG+ + + +L VG GL++ERVRQ++ A
Sbjct: 273 IQNVDLQDHIERWLAQLDERHREVVILRFGLHENEKGTLEAVGKAVGLTRERVRQIQIDA 332
Query: 453 LYRLKQSL 460
L +L+ L
Sbjct: 333 LQQLRHIL 340
>TIGR_CMR|SPO_1750 [details] [associations]
symbol:SPO_1750 "RNA polymerase sigma-70 factor RpoD"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007127
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR007631 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
Pfam:PF04546 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_166988.1 ProteinModelPortal:Q5LSL7
SMR:Q5LSL7 GeneID:3193502 KEGG:sil:SPO1750 PATRIC:23376823
OMA:YQGSELD Uniprot:Q5LSL7
Length = 660
Score = 148 (57.2 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 28/63 (44%), Positives = 46/63 (73%)
Query: 320 KSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGC 379
K E + + +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G
Sbjct: 414 KGEKEARQAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGY 472
Query: 380 RFA 382
+F+
Sbjct: 473 KFS 475
Score = 130 (50.8 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 30/83 (36%), Positives = 49/83 (59%)
Query: 376 QAGCRFANTGVEIP-DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEV 434
Q G + +P D ++Q+ L R +L L P+E ++R+RFGI +L EV
Sbjct: 565 QLGDFIEDKNAVLPLDSAIQENLKETTTR-VLASLTPREERVLRMRFGIGMNTDHTLEEV 623
Query: 435 GNIFGLSKERVRQLESRALYRLK 457
G F +++ER+RQ+E++AL +LK
Sbjct: 624 GQQFSVTRERIRQIEAKALRKLK 646
Score = 55 (24.4 bits), Expect = 2.2e-17, Sum P(3) = 2.2e-17
Identities = 17/68 (25%), Positives = 38/68 (55%)
Query: 217 ERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDR-NDPLRLFLWGPETRKLLTADEE 275
E +++K S +T T ++R+ ++ +E DR +DP+R++L + +LL+ + E
Sbjct: 79 EAEEEEQKGSTDLIT---TESNREVALAGAQAEKLDRTDDPVRMYLREMGSVELLSREGE 135
Query: 276 FELIAQIQ 283
+ +I+
Sbjct: 136 IAIAKRIE 143
Score = 40 (19.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 9/34 (26%), Positives = 19/34 (55%)
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
+ I+ + +L + ++ + GREPT E A+ +
Sbjct: 501 VHMIETINKLVRTGRQMLHEIGREPTPEELAEKL 534
>UNIPROTKB|Q9KUK1 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 41/117 (35%), Positives = 73/117 (62%)
Query: 268 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 325
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 440
Score = 134 (52.2 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
+T +E+P S ++ R++L L P+E ++R+RFGI+ +L EVG F +++
Sbjct: 537 DTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 596
Query: 443 ERVRQLESRALYRLK 457
ER+RQ+E++AL +L+
Sbjct: 597 ERIRQIEAKALRKLR 611
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE 289
+T+ + + A++ SE DP+R+++ T +LLT + E ++ +I+D I
Sbjct: 73 ITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN-- 130
Query: 290 KEKSKLQSQFGREPTLIE 307
+ +S + G P ++E
Sbjct: 131 QVQSAIAEYPGTIPYILE 148
>TIGR_CMR|VC_0517 [details] [associations]
symbol:VC_0517 "RNA polymerase sigma factor RpoD"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 KO:K03086
OMA:IEMNTDH TIGRFAMs:TIGR02393 ProtClustDB:PRK05658 PIR:F82312
RefSeq:NP_230168.1 ProteinModelPortal:Q9KUK1 SMR:Q9KUK1
DNASU:2615810 GeneID:2615810 KEGG:vch:VC0517 PATRIC:20080131
Uniprot:Q9KUK1
Length = 625
Score = 155 (59.6 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 41/117 (35%), Positives = 73/117 (62%)
Query: 268 KLLTADEEFELIAQIQDLIR-LEKEKSKLQSQFGREPTL-IEWAKAIGLSCRDLKSELHS 325
K+L +D+ + +A++++ + + KLQ +E +L +E K I S R E +
Sbjct: 330 KVLASDKPY--VAKVREQEEEIRRSIQKLQ-MIEQETSLSVERIKDI--SRRMSIGEAKA 384
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ +E ++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 385 RRAKKE-MVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 440
Score = 134 (52.2 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 27/75 (36%), Positives = 49/75 (65%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
+T +E+P S ++ R++L L P+E ++R+RFGI+ +L EVG F +++
Sbjct: 537 DTTLELPLDSATATSLKAATRDVLAGLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 596
Query: 443 ERVRQLESRALYRLK 457
ER+RQ+E++AL +L+
Sbjct: 597 ERIRQIEAKALRKLR 611
Score = 64 (27.6 bits), Expect = 1.3e-07, Sum P(2) = 1.3e-07
Identities = 19/78 (24%), Positives = 40/78 (51%)
Query: 230 VTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLE 289
+T+ + + A++ SE DP+R+++ T +LLT + E ++ +I+D I
Sbjct: 73 ITDEDAAEAAAAALSSVESEIGRTTDPVRMYMREMGTVELLTREGEIDIAKRIEDGIN-- 130
Query: 290 KEKSKLQSQFGREPTLIE 307
+ +S + G P ++E
Sbjct: 131 QVQSAIAEYPGTIPYILE 148
>UNIPROTKB|P00579 [details] [associations]
symbol:rpoD species:83333 "Escherichia coli K-12"
[GO:0016987 "sigma factor activity" evidence=IEA;IDA] [GO:0009408
"response to heat" evidence=IEP] [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR007631
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 EMBL:U28379 PDB:1TLH PDBsum:1TLH GO:GO:0016987
PDB:3IYD PDBsum:3IYD SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:J01687 PDB:3T72 PDBsum:3T72 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
PIR:A65095 RefSeq:NP_417539.1 RefSeq:YP_491259.1 PDB:1SIG PDB:2P7V
PDBsum:1SIG PDBsum:2P7V ProteinModelPortal:P00579 SMR:P00579
DIP:DIP-10773N IntAct:P00579 MINT:MINT-1220595 PaxDb:P00579
PRIDE:P00579 EnsemblBacteria:EBESCT00000001124
EnsemblBacteria:EBESCT00000001125 EnsemblBacteria:EBESCT00000001126
EnsemblBacteria:EBESCT00000001127 EnsemblBacteria:EBESCT00000001128
EnsemblBacteria:EBESCT00000001129 EnsemblBacteria:EBESCT00000001130
EnsemblBacteria:EBESCT00000017672 GeneID:12932074 GeneID:947567
KEGG:ecj:Y75_p2993 KEGG:eco:b3067 PATRIC:32121550 EchoBASE:EB0889
EcoGene:EG10896 ProtClustDB:PRK05658 BioCyc:EcoCyc:RPOD-MONOMER
BioCyc:ECOL316407:JW3039-MONOMER BioCyc:MetaCyc:RPOD-MONOMER
BindingDB:P00579 ChEMBL:CHEMBL5329 EvolutionaryTrace:P00579
Genevestigator:P00579 Uniprot:P00579
Length = 613
Score = 148 (57.2 bits), Expect = 8.3e-17, Sum P(3) = 8.3e-17
Identities = 36/90 (40%), Positives = 56/90 (62%)
Query: 294 KLQSQFGREPTL-IEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG 352
KLQ Q E L IE K I R + ++++++ ANLRLV+ +AK+Y RG
Sbjct: 343 KLQ-QIEEETGLTIEQVKDIN---RRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRG 398
Query: 353 ISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 399 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 428
Score = 126 (49.4 bits), Expect = 8.3e-17, Sum P(3) = 8.3e-17
Identities = 26/75 (34%), Positives = 48/75 (64%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
+T +E+P S + +R ++L L +E ++R+RFGI+ +L EVG F +++
Sbjct: 525 DTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTR 584
Query: 443 ERVRQLESRALYRLK 457
ER+RQ+E++AL +L+
Sbjct: 585 ERIRQIEAKALRKLR 599
Score = 52 (23.4 bits), Expect = 8.3e-17, Sum P(3) = 8.3e-17
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQD 284
DP+R+++ T +LLT + E ++ +I+D
Sbjct: 96 DPVRMYMREMGTVELLTREGEIDIAKRIED 125
Score = 42 (19.8 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 9/32 (28%), Positives = 18/32 (56%)
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
+ I+ + +L + ++ + GREPT E A+
Sbjct: 454 VHMIETINKLNRISRQMLQEMGREPTPEELAE 485
>TIGR_CMR|SO_1284 [details] [associations]
symbol:SO_1284 "RNA polymerase sigma-70 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HSSP:P00579 HOGENOM:HOG000270272
KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393 RefSeq:NP_716906.1
ProteinModelPortal:Q8EHE1 SMR:Q8EHE1 GeneID:1169104
KEGG:son:SO_1284 PATRIC:23522218 ProtClustDB:CLSK906181
Uniprot:Q8EHE1
Length = 616
Score = 147 (56.8 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 25/54 (46%), Positives = 44/54 (81%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 378 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 431
Score = 125 (49.1 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 25/75 (33%), Positives = 47/75 (62%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
+T +E+P S + ++ +L L +E ++R+RFGI+ +L EVG F +++
Sbjct: 528 DTTLELPLDSATSESLKSATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTR 587
Query: 443 ERVRQLESRALYRLK 457
ER+RQ+E++AL +L+
Sbjct: 588 ERIRQIEAKALRKLR 602
Score = 47 (21.6 bits), Expect = 4.5e-16, Sum P(3) = 4.5e-16
Identities = 20/76 (26%), Positives = 36/76 (47%)
Query: 231 TNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEK 290
T+ + A++ SE DP+R+++ T +LLT + E +IA+ R+E+
Sbjct: 72 TDEDAAEEAAAALATVESELGRTTDPVRMYMREMGTVELLTREGEI-VIAK-----RIEE 125
Query: 291 EKSKLQSQFGREPTLI 306
+ +QS P I
Sbjct: 126 GINTVQSSVAEYPQAI 141
Score = 38 (18.4 bits), Expect = 0.00056, Sum P(2) = 0.00056
Identities = 8/32 (25%), Positives = 18/32 (56%)
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
+ I+ + +L + ++ + GREP+ E A+
Sbjct: 457 VHMIETINKLNRISRQMLQEMGREPSPEELAE 488
>UNIPROTKB|O48655 [details] [associations]
symbol:rsigA "Plastid RNA polymerase sigma factor"
species:39947 "Oryza sativa Japonica Group" [GO:0009416 "response
to light stimulus" evidence=IEP] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 GO:GO:0009507 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009416
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 EMBL:AB005290 ProteinModelPortal:O48655 STRING:O48655
KEGG:dosa:Os08t0163400-01 Gramene:O48655 Uniprot:O48655
Length = 519
Score = 225 (84.3 bits), Expect = 8.2e-16, P = 8.2e-16
Identities = 56/190 (29%), Positives = 104/190 (54%)
Query: 258 RLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCR 317
R++L G +++LLT + L +I+D I L++++SKL+ + G EP+ + A ++ +S
Sbjct: 205 RIYLRGTVSKELLTHKQVVHLSHKIKDGIWLQQQRSKLKEKLGNEPSYKQLAHSLKISPP 264
Query: 318 DLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
+L+S +H +RE L +NLRLV+ +A++Y G+ L DL+Q G +GL++ +EKF
Sbjct: 265 ELRSRMHESFLAREMLTMSNLRLVISIAQKYDNLGVELADLIQGGLIGLLRGIEKFDASR 324
Query: 378 GCRFANTGVEIPDISVQKQLMRQHVR-NLLTLLNPKERCIVRLRFGIED-GKPKSLSEVG 435
G R + V + L L T L+ + I ++ +ED G ++ +
Sbjct: 325 GFRISTYVYWWIRQGVSRALAENSKTFRLPTYLHERLIAIRGAKYELEDQGIAPTIENIA 384
Query: 436 NIFGLSKERV 445
+S+++V
Sbjct: 385 GSLNISEKKV 394
>TIGR_CMR|CPS_4334 [details] [associations]
symbol:CPS_4334 "RNA polymerase sigma-70 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH TIGRFAMs:TIGR02393
RefSeq:YP_270983.1 ProteinModelPortal:Q47W39 SMR:Q47W39
STRING:Q47W39 GeneID:3522880 KEGG:cps:CPS_4334 PATRIC:21471513
BioCyc:CPSY167879:GI48-4343-MONOMER Uniprot:Q47W39
Length = 616
Score = 147 (56.8 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 25/54 (46%), Positives = 44/54 (81%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
++++++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 377 AKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFS 430
Score = 118 (46.6 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 24/71 (33%), Positives = 44/71 (61%)
Query: 387 EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 446
E+P S + ++ +L L +E ++R+RFGI+ +L EVG F +++ER+R
Sbjct: 531 ELPVDSATSENLKGATHEVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIR 590
Query: 447 QLESRALYRLK 457
Q+E++AL +L+
Sbjct: 591 QIEAKALRKLR 601
Score = 45 (20.9 bits), Expect = 3.7e-15, Sum P(3) = 3.7e-15
Identities = 12/39 (30%), Positives = 24/39 (61%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKS 293
DP+R+++ T +LLT E + +I++ I+ E ++S
Sbjct: 96 DPVRMYMREMGTVELLTRKGEIVIAKRIEEGIK-EVQRS 133
>TAIR|locus:2173249 [details] [associations]
symbol:SIG4 "AT5G13730" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=TAS] [GO:0016987 "sigma factor activity" evidence=ISS]
[GO:0071482 "cellular response to light stimulus" evidence=IEP]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0000023 "maltose metabolic process" evidence=RCA] [GO:0006098
"pentose-phosphate shunt" evidence=RCA] [GO:0016556 "mRNA
modification" evidence=RCA] [GO:0019252 "starch biosynthetic
process" evidence=RCA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AB006704 GO:GO:0071482
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HSSP:Q9EZJ8 GO:GO:0001053 EMBL:AF101075 EMBL:AB021119 EMBL:AY059907
EMBL:AY114689 IPI:IPI00548771 PIR:T51715 RefSeq:NP_196877.1
UniGene:At.43777 UniGene:At.49018 ProteinModelPortal:Q9ZSL6
SMR:Q9ZSL6 STRING:Q9ZSL6 PRIDE:Q9ZSL6 EnsemblPlants:AT5G13730.1
GeneID:831218 KEGG:ath:AT5G13730 GeneFarm:27 TAIR:At5g13730
InParanoid:Q9ZSL6 OMA:PENMVKR PhylomeDB:Q9ZSL6
ProtClustDB:CLSN2687040 Genevestigator:Q9ZSL6 Uniprot:Q9ZSL6
Length = 419
Score = 148 (57.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 37/120 (30%), Positives = 60/120 (50%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSE 322
G L+ EE +L +++ +LE + ++ E + A G R
Sbjct: 116 GASRSGFLSRLEEVQLCLYLKEGAKLENLGTSVEEN---EMVSVLLASGRGKKKRSANEI 172
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +REK+ RLVV +A YQG+G++L DL+QEGS+GL++ E+F P G + +
Sbjct: 173 LCRRKEAREKITRCYRRLVVSIATGYQGKGLNLQDLIQEGSIGLLRGAERFDPDRGYKLS 232
Score = 112 (44.5 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 24/69 (34%), Positives = 39/69 (56%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
P+ V+++ M+ + LL L +E ++ L FG+ P S E+G LS+ERVRQ+
Sbjct: 335 PEEMVKREHMKHEIEQLLGSLTARESRVLGLYFGLNGETPMSFEEIGKSLKLSRERVRQI 394
Query: 449 ESRALYRLK 457
AL +L+
Sbjct: 395 NGIALKKLR 403
>TIGR_CMR|GSU_0655 [details] [associations]
symbol:GSU_0655 "RNA polymerase sigma-32 factor"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
TIGRFAMs:TIGR02392 RefSeq:NP_951712.1 ProteinModelPortal:Q74FF4
GeneID:2685542 KEGG:gsu:GSU0655 PATRIC:22024067 OMA:DIVSARW
ProtClustDB:CLSK827976 BioCyc:GSUL243231:GH27-665-MONOMER
Uniprot:Q74FF4
Length = 284
Score = 129 (50.5 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 333 LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGV 386
LI +NLR VV +A +Y+ G+ + DL+QEG++GLM +V KF P G R + V
Sbjct: 49 LITSNLRFVVKIAAEYRSYGLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAV 102
Score = 123 (48.4 bits), Expect = 2.4e-14, Sum P(2) = 2.4e-14
Identities = 27/67 (40%), Positives = 41/67 (61%)
Query: 394 QKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453
+ +L++QH+ L LN KER IV R + P +L E+ + F +S+ERVRQ+E AL
Sbjct: 210 ESELLKQHIAGALGKLNEKERFIVEQR--VTADTPLTLQEIADRFSISRERVRQIEEAAL 267
Query: 454 YRLKQSL 460
++K L
Sbjct: 268 RKIKSYL 274
Score = 49 (22.3 bits), Expect = 5.3e-06, Sum P(2) = 5.3e-06
Identities = 31/124 (25%), Positives = 51/124 (41%)
Query: 255 DPLRLFLWGPETRK--LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAI 312
D L ++L E RK +LT +EE+ + + LE S + S + ++
Sbjct: 10 DSLTVYL--REIRKFPVLTPEEEYRFAVKFYEDKDLEAAHSLITSNLRFVVKIAAEYRSY 67
Query: 313 GLSCRDLKSELHSGNSSREKLINA--NLRLVVHVA---KQY-QGRGISLHDLLQEGSMGL 366
GL DL E + G + N +RL+ + + Y Q IS LL+ G+
Sbjct: 68 GLKMLDLIQEGNVGLMMAVRKFNPYKGIRLISYAVWWIRAYIQNHIISAWSLLKIGTTQA 127
Query: 367 MKSV 370
K +
Sbjct: 128 QKKL 131
>TIGR_CMR|SPO_0406 [details] [associations]
symbol:SPO_0406 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_165669.1
ProteinModelPortal:Q5LWD6 GeneID:3196326 KEGG:sil:SPO0406
PATRIC:23374073 OMA:GREWIEA ProtClustDB:PRK07500 Uniprot:Q5LWD6
Length = 292
Score = 135 (52.6 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 27/76 (35%), Positives = 45/76 (59%)
Query: 324 HSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN 383
H ++ +LI A +RL + +A +++ G ++DL+QE +GLMK+ +KF P G RF+
Sbjct: 36 HRDEAALHRLITAYMRLAISMAAKFKRYGAPMNDLIQEAGLGLMKAADKFDPDRGVRFST 95
Query: 384 TGVEIPDISVQKQLMR 399
V S+Q +MR
Sbjct: 96 YAVWWIKASIQDYVMR 111
Score = 114 (45.2 bits), Expect = 4.6e-14, Sum P(2) = 4.6e-14
Identities = 27/67 (40%), Positives = 44/67 (65%)
Query: 398 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457
+R + + LN +ER IVR R + D +P++L +G+ GLSKERVRQLE+ A +++
Sbjct: 220 LRDWLIEAMQALNERERFIVRER-KLRD-EPRTLESLGDELGLSKERVRQLEAAAFAKMR 277
Query: 458 QSLGGKA 464
+SL ++
Sbjct: 278 KSLEARS 284
>TIGR_CMR|GSU_1525 [details] [associations]
symbol:GSU_1525 "RNA polymerase sigma-70 factor family"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03086 OMA:IDTIEDT RefSeq:NP_952576.1 ProteinModelPortal:Q74CZ4
SMR:Q74CZ4 GeneID:2687268 KEGG:gsu:GSU1525 PATRIC:22025893
ProtClustDB:CLSK828404 BioCyc:GSUL243231:GH27-1508-MONOMER
Uniprot:Q74CZ4
Length = 328
Score = 173 (66.0 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 46/162 (28%), Positives = 89/162 (54%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L + G+ ++R+K+I +NLRLVV +AK+Y RG+ DL++EG+MGL+K+VE+FK
Sbjct: 79 KELAGRIAKGDKAARDKMIESNLRLVVKIAKRYINRGLPFLDLIEEGNMGLIKAVERFKL 138
Query: 376 QAGCRFANTGVEIPDISVQKQLMRQH--VRNLLTLLNPKERCIVRLRFGIED-GKPKSLS 432
CRF+ S+++ L+ Q +R + + + + + R ++ + S+
Sbjct: 139 SKECRFSTYATWWIRQSIERALVNQSRTIRLPVHVSDDINKMLKITRELVQRLNREPSVK 198
Query: 433 EVGNIFGLSKERVRQLES--RALYRLKQSLGGKASYGYADLL 472
EV ++ VR+L + Y +++ +G + Y D +
Sbjct: 199 EVATEMKVNSAYVRRLMVLLKKTYSIERPMGENSDYFLIDTI 240
Score = 126 (49.4 bits), Expect = 8.0e-08, Sum P(2) = 8.0e-08
Identities = 21/50 (42%), Positives = 40/50 (80%)
Query: 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458
L+ E+ I+ LRFG+ED +P++L +G FG+++ER+RQ+E+++L +L++
Sbjct: 268 LSENEQTILTLRFGLEDKEPQTLDTIGRSFGVTRERIRQIEAKSLEKLRK 317
Score = 66 (28.3 bits), Expect = 2.3e-13, Sum P(2) = 2.3e-13
Identities = 20/55 (36%), Positives = 28/55 (50%)
Query: 229 QVTNHETYNSRKASVKKKLS-EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQI 282
+ E A V K + E FD D ++L+L + +LLTADEE EL +I
Sbjct: 33 EAAEEEEEPEEPAEVGKNIEQEHFD--DAIKLYLREIQRTRLLTADEEKELAGRI 85
>TIGR_CMR|CHY_2056 [details] [associations]
symbol:CHY_2056 "RNA polymerase sigma-E factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK08301
TIGRFAMs:TIGR02835 RefSeq:YP_360875.1 ProteinModelPortal:Q3AAF9
STRING:Q3AAF9 GeneID:3727807 KEGG:chy:CHY_2056 PATRIC:21277193
OMA:ERQETTI BioCyc:CHYD246194:GJCN-2055-MONOMER Uniprot:Q3AAF9
Length = 237
Score = 118 (46.6 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 20/55 (36%), Positives = 39/55 (70%)
Query: 328 SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+++ LI NLRLVV++A++++ G+++ DL+ G++GL+K+V F P+ + A
Sbjct: 55 AAKSTLIERNLRLVVYIARKFENTGVNIEDLVSIGTIGLIKAVNTFNPEKKIKLA 109
Score = 116 (45.9 bits), Expect = 1.0e-12, Sum P(2) = 1.0e-12
Identities = 25/74 (33%), Positives = 47/74 (63%)
Query: 387 EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVR 446
++ + V+K+L++ L+ LN +ER I+ LRFG+ DG ++ EV ++ G+S+ +
Sbjct: 164 KVMEDEVEKKLLKV----ALSKLNQRERKIMELRFGLTDGYERTQKEVADLLGISQSYIS 219
Query: 447 QLESRALYRLKQSL 460
+LE + L RLK+ +
Sbjct: 220 RLEKKILKRLKKEI 233
Score = 39 (18.8 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 7/12 (58%), Positives = 9/12 (75%)
Query: 380 RFANTGVEIPDI 391
+F NTGV I D+
Sbjct: 74 KFENTGVNIEDL 85
Score = 38 (18.4 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 11/26 (42%), Positives = 12/26 (46%)
Query: 81 EDKTSQATSDSRNIETEAFFVEEKNS 106
E K AT SR IE E +NS
Sbjct: 103 EKKIKLATYASRCIENEILMYLRRNS 128
>TIGR_CMR|BA_4043 [details] [associations]
symbol:BA_4043 "RNA polymerase sigma-29 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014200 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 RefSeq:NP_846283.1
RefSeq:YP_020685.1 RefSeq:YP_030006.1 ProteinModelPortal:P62177
DNASU:1086623 EnsemblBacteria:EBBACT00000012093
EnsemblBacteria:EBBACT00000017203 EnsemblBacteria:EBBACT00000022798
GeneID:1086623 GeneID:2816772 GeneID:2850034 KEGG:ban:BA_4043
KEGG:bar:GBAA_4043 KEGG:bat:BAS3755 OMA:LIMELRF
ProtClustDB:PRK08301 BioCyc:BANT260799:GJAJ-3813-MONOMER
BioCyc:BANT261594:GJ7F-3931-MONOMER TIGRFAMs:TIGR02835
Uniprot:P62177
Length = 239
Score = 126 (49.4 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 25/65 (38%), Positives = 45/65 (69%)
Query: 319 LKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377
L ++L G+ ++R LI NLRLVV++A++++ GI++ DL+ G++GL+K+V F P+
Sbjct: 47 LLNKLPKGDQAARSLLIERNLRLVVYIARKFENTGINIEDLISIGTIGLIKAVNTFNPEK 106
Query: 378 GCRFA 382
+ A
Sbjct: 107 KIKLA 111
Score = 99 (39.9 bits), Expect = 6.2e-12, Sum P(2) = 6.2e-12
Identities = 20/60 (33%), Positives = 37/60 (61%)
Query: 399 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458
R + L LN +E+ I+ LRFG+ G+ K+ +V ++ G+S+ + +LE R + RL++
Sbjct: 174 RHLLMKALHQLNDREKQIMELRFGLAGGEEKTQKDVADMLGISQSYISRLEKRIIKRLRK 233
>TIGR_CMR|SO_3432 [details] [associations]
symbol:SO_3432 "RNA polymerase sigma factor RpoS"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0006950
"response to stress" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:AE014299 GenomeReviews:AE014299_GR
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03087 TIGRFAMs:TIGR02394 OMA:KWLDELN
RefSeq:NP_718985.1 HSSP:Q9WX78 ProteinModelPortal:Q8EBR8 SMR:Q8EBR8
GeneID:1171107 KEGG:son:SO_3432 PATRIC:23526552
ProtClustDB:CLSK907167 Uniprot:Q8EBR8
Length = 326
Score = 182 (69.1 bits), Expect = 1.6e-11, P = 1.6e-11
Identities = 59/213 (27%), Positives = 110/213 (51%)
Query: 270 LTAD--EEFELIAQIQDLIRLEKEKSKLQ-SQFGREPTLIEWAKAIGLSCRDLKSELHSG 326
+ AD +E L Q+QD ++ + ++L + G P L+ + + S + LK
Sbjct: 29 IAADLVQELGLEQQVQDDLQKNLDATQLYLGEIGFSP-LLSAEEEVYFSRKALKG----C 83
Query: 327 NSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGV 386
SR ++I +NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+
Sbjct: 84 EKSRNRMIESNLRLVVKIARRYNNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYAT 143
Query: 387 EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIE-----DGKP--KSLSEVGNIFG 439
++++ +M Q R + ++ + V LR E D +P + ++E +
Sbjct: 144 WWIRQTIERAIMNQ-TRTIRLPIHVVKELNVYLRTARELAQKLDHEPTAEEIAEKLQVSS 202
Query: 440 LSKERVRQLESRALYRLKQSLGGKASYGYADLL 472
+ R+ +L + + + LGG D+L
Sbjct: 203 VDVSRMLKLNEK-ITSVDVPLGGDNDKALLDVL 234
Score = 132 (51.5 bits), Expect = 8.3e-06, P = 8.3e-06
Identities = 30/75 (40%), Positives = 45/75 (60%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
PD VQ + + V L LN K+R ++ RFG+ +P +L +VG GL++ERVRQ+
Sbjct: 242 PDYKVQDEDISNSVVKWLNELNTKQREVLARRFGLLGYEPSTLEDVGAEIGLTRERVRQI 301
Query: 449 ESRALYRLKQSLGGK 463
+ AL RL+ LG +
Sbjct: 302 QVEALKRLRDLLGAQ 316
>TIGR_CMR|BA_4515 [details] [associations]
symbol:BA_4515 "RNA polymerase sigma-43 factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 KO:K03086 TIGRFAMs:TIGR02393 HSSP:Q9EZJ8
ProtClustDB:PRK09210 RefSeq:NP_846739.1 RefSeq:YP_021160.1
RefSeq:YP_030442.1 ProteinModelPortal:Q81LU5 SMR:Q81LU5
IntAct:Q81LU5 DNASU:1088240 EnsemblBacteria:EBBACT00000011556
EnsemblBacteria:EBBACT00000017175 EnsemblBacteria:EBBACT00000020140
GeneID:1088240 GeneID:2819028 GeneID:2852221 KEGG:ban:BA_4515
KEGG:bar:GBAA_4515 KEGG:bat:BAS4194 OMA:AERMSSF
BioCyc:BANT260799:GJAJ-4250-MONOMER
BioCyc:BANT261594:GJ7F-4392-MONOMER Uniprot:Q81LU5
Length = 373
Score = 182 (69.1 bits), Expect = 2.6e-11, P = 2.6e-11
Identities = 55/191 (28%), Positives = 99/191 (51%)
Query: 263 GPETRKLLTADEEFELI-AQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKS 321
GP ++ +EEF+L + +++ + GR L+ + I L+ R
Sbjct: 74 GPNNHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVD-LLSAEEEIRLATR---- 128
Query: 322 ELHSGNS-SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380
+ G+ ++ +L ANLRLVV +AK+Y GRG+ DL+QEG+MGL+K+VEKF + G +
Sbjct: 129 -IEEGDEEAKRRLAEANLRLVVSIAKRYVGRGMLFLDLIQEGNMGLIKAVEKFDYRKGFK 187
Query: 381 FANTGVEIPDISVQKQLMRQH--VRNLLTLLNPKERCIVRLRFGIED-GKPKSLSEVGNI 437
F+ ++ + + Q +R + ++ + I R ++D G+ S E+G
Sbjct: 188 FSTYATWWIRQAITRAIADQARTIRIPVHMVETINKLIRVQRQLLQDLGREPSPEEIGEE 247
Query: 438 FGLSKERVRQL 448
L+ E+VR++
Sbjct: 248 MDLAPEKVREI 258
Score = 159 (61.0 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 25/62 (40%), Positives = 50/62 (80%)
Query: 396 QLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 455
+L+++ + ++L L +E ++RLRFG++DG+ ++L EVG +FG+++ER+RQ+E++AL +
Sbjct: 299 ELLKEQLEDVLDTLTDREENVLRLRFGLDDGRTRTLEEVGKVFGVTRERIRQIEAKALRK 358
Query: 456 LK 457
L+
Sbjct: 359 LR 360
Score = 59 (25.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 232 NHETYNSRKASVKKKLS--EGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQD 284
NH+ + + LS G NDP+R++L LL+A+EE L +I++
Sbjct: 77 NHQITKTEEEFDLNDLSVPPGVKINDPVRMYLKEIGRVDLLSAEEEIRLATRIEE 131
Score = 40 (19.1 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 7/30 (23%), Positives = 19/30 (63%)
Query: 274 EEFELIAQ-IQDLIRLEKEKSKLQSQFGRE 302
EE +L + +++++++ +E L++ G E
Sbjct: 246 EEMDLAPEKVREILKIAQEPVSLETPIGEE 275
>TIGR_CMR|CHY_0617 [details] [associations]
symbol:CHY_0617 "RNA polymerase sigma-K factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014209 InterPro:IPR014284 InterPro:IPR016263
Pfam:PF04542 Pfam:PF04545 PIRSF:PIRSF000770 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0030435 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191
HOGENOM:HOG000270274 KO:K03091 ProtClustDB:PRK05803
TIGRFAMs:TIGR02846 RefSeq:YP_359473.1 ProteinModelPortal:Q3AEG1
STRING:Q3AEG1 GeneID:3728237 KEGG:chy:CHY_0617 PATRIC:21274371
OMA:LERETEC BioCyc:CHYD246194:GJCN-617-MONOMER Uniprot:Q3AEG1
Length = 234
Score = 127 (49.8 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 22/60 (36%), Positives = 38/60 (63%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
L +R+ L NLRLV H+ K+++G G + DL+ G++GL+K+++ F+P G + A
Sbjct: 44 LQGDREARDVLAERNLRLVAHIVKKFEGTGEATEDLISIGTIGLIKAIDTFRPDKGTKLA 103
Score = 89 (36.4 bits), Expect = 4.2e-11, Sum P(2) = 4.2e-11
Identities = 19/64 (29%), Positives = 34/64 (53%)
Query: 393 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452
V + L + + L L P+ER ++ RFG+ K+ E+ G+S+ V ++E RA
Sbjct: 160 VVRMLDAETIEKNLKKLTPRERKVIEERFGLSQTPRKTQREIAKKMGISRSYVSRIEKRA 219
Query: 453 LYRL 456
+ +L
Sbjct: 220 ILKL 223
>TAIR|locus:2010871 [details] [associations]
symbol:SIGA "AT1G64860" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS;IDA] [GO:0009507 "chloroplast"
evidence=IDA] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0001053 "plastid sigma factor activity" evidence=IMP]
[GO:2001141 "regulation of RNA biosynthetic process" evidence=IMP]
[GO:0071461 "cellular response to redox state" evidence=IDA]
[GO:0080005 "photosystem stoichiometry adjustment" evidence=IDA]
[GO:0006833 "water transport" evidence=RCA] [GO:0009651 "response
to salt stress" evidence=RCA] [GO:0009750 "response to fructose
stimulus" evidence=RCA] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 EMBL:CP002684
GO:GO:0009507 GO:GO:0006355 GO:GO:0003677 GO:GO:0071461
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AC006193 GO:GO:0071482 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0080005 eggNOG:COG0568 KO:K03086
EMBL:D89993 EMBL:AB019942 EMBL:AB004821 EMBL:AF015542 EMBL:Y14252
EMBL:AF024590 EMBL:AF325036 EMBL:AY062526 EMBL:AY093306
EMBL:AK316773 EMBL:Y14567 IPI:IPI00521776 IPI:IPI00991957
PIR:H96671 PIR:T52642 RefSeq:NP_001185314.1 RefSeq:NP_176666.1
UniGene:At.25556 HSSP:Q9EZJ8 ProteinModelPortal:O24629 SMR:O24629
IntAct:O24629 STRING:O24629 PRIDE:O24629 EnsemblPlants:AT1G64860.1
GeneID:842794 KEGG:ath:AT1G64860 GeneFarm:25 TAIR:At1g64860
InParanoid:O24629 OMA:DHKSRLK ProtClustDB:CLSN2679344
Genevestigator:O24629 GO:GO:0001053 Uniprot:O24629
Length = 502
Score = 180 (68.4 bits), Expect = 8.8e-11, P = 8.8e-11
Identities = 59/197 (29%), Positives = 107/197 (54%)
Query: 257 LRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC 316
+R ++ G + +L+ E L +I+ +RL+ KS+L+ + G EP+ + A ++ +S
Sbjct: 187 VRGYVKGVISEDVLSHVEVVRLSKKIKSGLRLDDHKSRLKDRLGCEPSDEQLAVSLKISR 246
Query: 317 RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
+L++ L + +REKL +N+RLV+ +A++Y G + DL+Q G +GL++ +EKF
Sbjct: 247 AELQAWLMECHLAREKLAMSNVRLVMSIAQRYDNLGAEMSDLVQGGLIGLLRGIEKFDSS 306
Query: 377 AGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPK---ERC-IVR---LRFGIEDGKPK 429
G R + T V +++ + R V N TL P ER ++R LR E G
Sbjct: 307 KGFRIS-TYVYW---WIRQGVSRALVDNSRTLRLPTHLHERLGLIRNAKLRLQ-EKGITP 361
Query: 430 SLSEVGNIFGLSKERVR 446
S+ + +S+++VR
Sbjct: 362 SIDRIAESLNMSQKKVR 378
>TIGR_CMR|GSU_3089 [details] [associations]
symbol:GSU_3089 "RNA polymerase sigma factor RpoD"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF03979 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:NP_954130.1 ProteinModelPortal:Q748B8 SMR:Q748B8
GeneID:2686774 KEGG:gsu:GSU3089 PATRIC:22029033 OMA:REMGSVS
ProtClustDB:CLSK924660 BioCyc:GSUL243231:GH27-3063-MONOMER
Uniprot:Q748B8
Length = 577
Score = 180 (68.4 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 71/273 (26%), Positives = 133/273 (48%)
Query: 193 DISLTSSLGYPLEEVKQFSQPR---FLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSE 249
D+ L ++L LEE + R ER+ K K+++ VT+ + A + ++L E
Sbjct: 192 DVRL-AALNAELEEESLSASRRQELLAERQELKEKLAE-MVTSLRLKDRHIAKIAQRLKE 249
Query: 250 GFDRNDPLRLFLWGPETRKLLTADEEFELIAQ--IQDLIRLEKEKSKLQSQFGR--EPTL 305
+ D + + E ++AD E+ A + I+L E ++ + R E L
Sbjct: 250 LSAKVDTIMAEIAAIEKEAGVSADTLKEIAASEAVGKGIKLSLEDAQKHEKKVRSAEKKL 309
Query: 306 IEWAKAIGLSCRDLKSELHS---GNS----SREKLINANLRLVVHVAKQYQGRGISLHDL 358
+ + G R+L L + G + ++ +L+ ANLRLVV +AK+Y RG+ DL
Sbjct: 310 KKVEEESGFKARELSDALRAIDRGEAKSKLAKSELVEANLRLVVSIAKKYTNRGLQFLDL 369
Query: 359 LQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQKQLMRQH--VRNLLTLLNPKERCI 416
+QEG++GLMK+V+KF+ Q G +F+ ++ + + Q +R + ++ + I
Sbjct: 370 IQEGNIGLMKAVDKFEYQRGYKFSTYATWWIRQAITRAIADQARTIRIPVHMIETINKLI 429
Query: 417 VRLRFGIED-GKPKSLSEVGNIFGLSKERVRQL 448
R +++ G+ S E+ L ++VR++
Sbjct: 430 RTSRQLVQEIGREPSPEEIAERMNLPLDKVRKV 462
Score = 130 (50.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 27/73 (36%), Positives = 46/73 (63%)
Query: 385 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 444
GV P +V K + + +L L P+E ++R+RFGI + +L EVG F +++ER
Sbjct: 492 GVVSPLEAVIKANLSEQTARVLATLTPREEKVLRMRFGIGEKSDHTLEEVGQDFEVTRER 551
Query: 445 VRQLESRALYRLK 457
+RQ+E++AL +L+
Sbjct: 552 IRQIEAKALRKLR 564
Score = 48 (22.0 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQD 284
+DP+R++L + LLT + E E+ +I++
Sbjct: 94 SDPVRMYLREMGSVSLLTREGEVEIAKRIEE 124
>TIGR_CMR|NSE_0312 [details] [associations]
symbol:NSE_0312 "RNA polymerase sigma factor RpoD"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979
Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 RefSeq:YP_506202.1
ProteinModelPortal:Q2GE94 SMR:Q2GE94 STRING:Q2GE94 GeneID:3931706
KEGG:nse:NSE_0312 PATRIC:22680715 OMA:HIHETAN
ProtClustDB:CLSK2527840 BioCyc:NSEN222891:GHFU-338-MONOMER
Uniprot:Q2GE94
Length = 620
Score = 170 (64.9 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 38/141 (26%), Positives = 80/141 (56%)
Query: 310 KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKS 369
++I R + + L + N+++ +++ ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+
Sbjct: 342 RSISFLTRKVATHLDNANAAKHRMVEANLRLVISIAKKYTNRGMPFPDLIQEGNIGLMKA 401
Query: 370 VEKFKPQAGCRFANTGVEIPDISVQKQLMR--QHVRNLLTLLNPKERCI-VRLRFGIEDG 426
V+KF + G +F+ ++ + + VR + + + + R R +G
Sbjct: 402 VDKFDHRRGHKFSTYATWWCRQAITRAIADCGSIVRKPVHIHETANKVMRTRRRLYNLNG 461
Query: 427 KPKSLSEVGNIFGLSKERVRQ 447
+ ++ E+ N+ +S ++V++
Sbjct: 462 REPTVEEIANLLKISPDKVKK 482
Score = 52 (23.4 bits), Expect = 2.2e-10, Sum P(2) = 2.2e-10
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQI 282
+DP+RL+L KLL+ D+E E+ I
Sbjct: 91 DDPVRLYLREMSYVKLLSRDDEVEIAKAI 119
>TIGR_CMR|CHY_0455 [details] [associations]
symbol:CHY_0455 "RNA polymerase sigma factor RpoD"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007127 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 KO:K03086 TIGRFAMs:TIGR02393 RefSeq:YP_359316.1
ProteinModelPortal:Q3AEW8 SMR:Q3AEW8 STRING:Q3AEW8 GeneID:3727139
KEGG:chy:CHY_0455 PATRIC:21274071 OMA:IDTIEDT ProtClustDB:PRK09210
BioCyc:CHYD246194:GJCN-456-MONOMER Uniprot:Q3AEW8
Length = 370
Score = 173 (66.0 bits), Expect = 2.7e-10, P = 2.7e-10
Identities = 53/179 (29%), Positives = 94/179 (52%)
Query: 274 EEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKL 333
+E +L I + I ++ + GR P L + I L+ R K E ++ KL
Sbjct: 83 DEVDLDLTIPEGIAIDDPVRMYLKEIGRVPLLTP-EEEIELAKR--KEE--GDEEAKRKL 137
Query: 334 INANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISV 393
ANLRLVV +AK+Y GRG+ DL+QEG++GL+K+VEKF + G +F+ ++
Sbjct: 138 AEANLRLVVSIAKRYVGRGMLFLDLIQEGNLGLLKAVEKFDYRKGYKFSTYATWWIRQAI 197
Query: 394 QKQLMRQHVRNLLTLLNPKERC--IVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQL 448
+ + Q R + ++ E ++R+ + E G+ + E+ G+S+++VR++
Sbjct: 198 TRAIADQ-ARTIRIPVHMVETINKLIRVSRNLLQELGREPTPEEIAKEMGISEDKVREI 255
Score = 159 (61.0 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 27/61 (44%), Positives = 49/61 (80%)
Query: 397 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 456
L+R+ + +L L +E+ ++RLRFG++DG+ ++L EVG IFG+++ER+RQ+E++AL +L
Sbjct: 297 LLREQLDEVLKTLTEREQKVLRLRFGLDDGRARTLEEVGQIFGVTRERIRQIEAKALRKL 356
Query: 457 K 457
+
Sbjct: 357 R 357
Score = 55 (24.4 bits), Expect = 2.9e-10, Sum P(2) = 2.9e-10
Identities = 17/49 (34%), Positives = 27/49 (55%)
Query: 247 LSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKL 295
+ EG +DP+R++L LLT +EE EL + ++ E+ K KL
Sbjct: 91 IPEGIAIDDPVRMYLKEIGRVPLLTPEEEIELAKRKEE--GDEEAKRKL 137
>TAIR|locus:2084420 [details] [associations]
symbol:SIGC "AT3G53920" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;IMP] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009507 "chloroplast"
evidence=ISM;IDA] [GO:0019685 "photosynthesis, dark reaction"
evidence=NAS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IDA;TAS] [GO:0071482 "cellular response to light stimulus"
evidence=IEP] [GO:0001053 "plastid sigma factor activity"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009507 EMBL:CP002686 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
EMBL:AL132960 GO:GO:0003899 GO:GO:0071482 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 InterPro:IPR016262 PIRSF:PIRSF000767 EMBL:D89994
EMBL:AB019944 EMBL:AB004822 EMBL:AF015544 EMBL:BT030362
EMBL:AY128331 IPI:IPI00530485 PIR:T45932 RefSeq:NP_190960.1
UniGene:At.21270 ProteinModelPortal:O24621 SMR:O24621 STRING:O24621
PRIDE:O24621 EnsemblPlants:AT3G53920.1 GeneID:824559
KEGG:ath:AT3G53920 GeneFarm:26 TAIR:At3g53920 InParanoid:O24621
KO:K03093 OMA:WIRKSMS PhylomeDB:O24621 ProtClustDB:CLSN2685061
Genevestigator:O24621 Uniprot:O24621
Length = 571
Score = 175 (66.7 bits), Expect = 4.0e-10, P = 4.0e-10
Identities = 68/264 (25%), Positives = 130/264 (49%)
Query: 195 SLTSSLGYPLEEVKQF-SQPRFLERRSK-KRKVSKPQVTNHETYNSRKASVKKKLSEGFD 252
S+TS L E V +Q F+ R K K+K + VT N ++S+ L ++
Sbjct: 198 SITSCLSDTTELVDTTPNQQVFVSSRRKVKKKARRSSVTAE---NGDQSSLPIGLRTTWN 254
Query: 253 RNDPLRLFLWGPETRKLLT--ADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAK 310
D R+ P+ RK + E E+ ++ + +E+ +++L+ + G+ +L WA
Sbjct: 255 NIDVPRVRR-PPKYRKKRERISRNETEMSTGVKIVADMERIRTQLEEESGKVASLSCWAA 313
Query: 311 AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSV 370
A G++ + L LH G R++L+ + LV+ +A+ Y+G GI+ DL+Q G +G+++
Sbjct: 314 AAGMNEKLLMRNLHYGWYCRDELVKSTRSLVLFLARNYRGLGIAHEDLIQAGYVGVLQGA 373
Query: 371 EKFKPQAGCRFANTGVEIPDISVQKQLMRQHVR------NLLTLLN--PKERCIVRLRFG 422
E+F G +F+ T V+ ++ +H R +++ +N K R ++ G
Sbjct: 374 ERFDHTRGYKFS-TYVQYWIRKSMSTMVSRHARGVHIPSSIIRTINHIQKARKTLKTSHG 432
Query: 423 IEDGKPKSLSEVGNIFGLSKERVR 446
I K + E+ + G S +++R
Sbjct: 433 I---KYAADEEIAKLTGHSVKKIR 453
Score = 158 (60.7 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 29/75 (38%), Positives = 54/75 (72%)
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442
+T +E P+ +V +Q R+ + +LL L P+E+ ++ LR+G++D +PKSL E+G + +SK
Sbjct: 483 DTTMESPEEAVMRQSARRDIHDLLEGLEPREKQVMVLRYGLQDYRPKSLEEIGKLLKVSK 542
Query: 443 ERVRQLESRALYRLK 457
E +R++E RA+ +L+
Sbjct: 543 EWIRKIERRAMAKLR 557
>UNIPROTKB|P50511 [details] [associations]
symbol:rpoH "RNA polymerase sigma-32 factor" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS]
InterPro:IPR000943 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008270
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0009408 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 EMBL:U44432 PIR:D82357 RefSeq:NP_229808.1
ProteinModelPortal:P50511 DNASU:2614865 GeneID:2614865
KEGG:vch:VC0150 PATRIC:20079338 OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 165 (63.1 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 45/144 (31%), Positives = 75/144 (52%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 375 PQAGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK----- 429
P+ G R + V + + ++R ++ + K + +L F + K +
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNW--RIVKIATTKAQR--KLFFNLRKSKKRLGWFN 150
Query: 430 --SLSEVGNIFGLSKERVRQLESR 451
+ V G+ VR++ESR
Sbjct: 151 NGEVETVARELGVEPAEVREMESR 174
>TIGR_CMR|VC_0150 [details] [associations]
symbol:VC_0150 "RNA polymerase sigma-32 factor" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
KO:K03089 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 EMBL:U44432
PIR:D82357 RefSeq:NP_229808.1 ProteinModelPortal:P50511
DNASU:2614865 GeneID:2614865 KEGG:vch:VC0150 PATRIC:20079338
OMA:LDQRERY Uniprot:P50511
Length = 286
Score = 165 (63.1 bits), Expect = 9.1e-10, P = 9.1e-10
Identities = 45/144 (31%), Positives = 75/144 (52%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R+L LH G+ K LI ++LR VVHVA+ Y G G+ + DL+QEG++GLMK+V++F
Sbjct: 35 RELAERLHYKGDIDAAKGLILSHLRFVVHVARGYSGYGLPMADLVQEGNIGLMKAVKRFN 94
Query: 375 PQAGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK----- 429
P+ G R + V + + ++R ++ + K + +L F + K +
Sbjct: 95 PEMGVRLVSFAVHWIKAEIHEYVLRNW--RIVKIATTKAQR--KLFFNLRKSKKRLGWFN 150
Query: 430 --SLSEVGNIFGLSKERVRQLESR 451
+ V G+ VR++ESR
Sbjct: 151 NGEVETVARELGVEPAEVREMESR 174
>UNIPROTKB|P13445 [details] [associations]
symbol:rpoS "RNA polymerase, sigma S (sigma 38) factor"
species:83333 "Escherichia coli K-12" [GO:0006950 "response to
stress" evidence=IDA] [GO:0001123 "transcription initiation from
bacterial-type RNA polymerase promoter" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA;IDA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0016987 "sigma factor activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012761 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539 Pfam:PF04542
Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 HOGENOM:HOG000270273
EMBL:U29579 GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 EMBL:L07869 EMBL:D17549 eggNOG:COG0568 KO:K03087
TIGRFAMs:TIGR02394 EMBL:X16400 EMBL:D13548 EMBL:Z14969 PIR:A65055
RefSeq:NP_417221.1 RefSeq:YP_490950.1 ProteinModelPortal:P13445
SMR:P13445 DIP:DIP-10777N IntAct:P13445 MINT:MINT-1228474
PRIDE:P13445 EnsemblBacteria:EBESCT00000000907
EnsemblBacteria:EBESCT00000000908 EnsemblBacteria:EBESCT00000000909
EnsemblBacteria:EBESCT00000017671 GeneID:12933280 GeneID:947210
KEGG:ecj:Y75_p2679 KEGG:eco:b2741 PATRIC:32120886 EchoBASE:EB0505
EcoGene:EG10510 OMA:AARQVMI ProtClustDB:PRK05657
BioCyc:EcoCyc:RPOS-MONOMER BioCyc:ECOL316407:JW5437-MONOMER
BioCyc:MetaCyc:RPOS-MONOMER Genevestigator:P13445 Uniprot:P13445
Length = 330
Score = 166 (63.5 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 58/205 (28%), Positives = 105/205 (51%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E EL++Q L+ + L + G P L+ + + + R L+ ++ +SR ++I
Sbjct: 42 EEELLSQGATQRVLDATQLYL-GEIGYSP-LLTAEEEVYFARRALRGDV----ASRRRMI 95
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQ 394
+NLRLVV +A++Y RG++L DL++EG++GL+++VEKF P+ G RF+ +++
Sbjct: 96 ESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE 155
Query: 395 KQLMRQHVRNLLTLLNPKERCIVRLRFGIE-----DGKPKSLSEVGNIFGLSKERV-RQL 448
+ +M Q R + ++ + V LR E D +P S E+ + V R L
Sbjct: 156 RAIMNQ-TRTIRLPIHIVKELNVYLRTARELSHKLDHEP-SAEEIAEQLDKPVDDVSRML 213
Query: 449 E-SRALYRLKQSLGGKASYGYADLL 472
+ + + LGG + D+L
Sbjct: 214 RLNERITSVDTPLGGDSEKALLDIL 238
Score = 114 (45.2 bits), Expect = 0.00087, P = 0.00087
Identities = 26/72 (36%), Positives = 43/72 (59%)
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
P+ + Q M+Q + L LN K+R ++ RFG+ + +L +VG GL++ERVRQ+
Sbjct: 246 PEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQI 305
Query: 449 ESRALYRLKQSL 460
+ L RL++ L
Sbjct: 306 QVEGLRRLREIL 317
>TIGR_CMR|CPS_0161 [details] [associations]
symbol:CPS_0161 "RNA polymerase sigma-32 factor"
species:167879 "Colwellia psychrerythraea 34H" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_266929.1 ProteinModelPortal:Q48AI4
STRING:Q48AI4 DNASU:3520829 GeneID:3520829 KEGG:cps:CPS_0161
PATRIC:21463737 OMA:EIAYAER BioCyc:CPSY167879:GI48-264-MONOMER
Uniprot:Q48AI4
Length = 285
Score = 162 (62.1 bits), Expect = 2.0e-09, P = 2.0e-09
Identities = 44/143 (30%), Positives = 78/143 (54%)
Query: 318 DLKSELHSGNS--SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
DL + L++ N + ++LI ++LR V+HVAK Y G G+ DL+QEG++GLMK+V++F P
Sbjct: 35 DLATRLYNENDLQAAQELIMSHLRFVIHVAKGYSGYGLPHADLVQEGNVGLMKAVKRFNP 94
Query: 376 QAGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK----SL 431
+ G R + V + + +++ R + +R +L F + K + S
Sbjct: 95 EVGVRLVSFAVHWIKAEIHEFVLKNW-RIVKVATTKAQR---KLFFNLRKNKKRLGWFST 150
Query: 432 SEVGNI---FGLSKERVRQLESR 451
EV + G++ + V ++ESR
Sbjct: 151 EEVNTVAENLGVTTKDVMEMESR 173
>UNIPROTKB|P0A602 [details] [associations]
symbol:rpoD "RNA polymerase sigma factor RpoD" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005618 "cell wall" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0009405 "pathogenesis" evidence=IMP] [GO:0009415
"response to water stimulus" evidence=IEP] [GO:0016987 "sigma
factor activity" evidence=IDA] [GO:0040007 "growth" evidence=IMP]
[GO:0052572 "response to host immune response" evidence=IEP]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012760
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0005886 GO:GO:0040007
GO:GO:0005618 GO:GO:0009405 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR EMBL:BX842580 GO:GO:0003677 GO:GO:0052572
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
HOGENOM:HOG000270273 GO:GO:0016987 GO:GO:0009415 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 KO:K03086
TIGRFAMs:TIGR02393 EMBL:U10059 EMBL:U21134 PIR:B70531
RefSeq:NP_217219.1 RefSeq:NP_337278.1 RefSeq:YP_006516147.1
ProteinModelPortal:P0A602 SMR:P0A602 PRIDE:P0A602
EnsemblBacteria:EBMYCT00000003025 EnsemblBacteria:EBMYCT00000070252
GeneID:13319430 GeneID:887477 GeneID:925521 KEGG:mtc:MT2777
KEGG:mtu:Rv2703 KEGG:mtv:RVBD_2703 PATRIC:18127848
TubercuList:Rv2703 OMA:LMSEMAE ProtClustDB:PRK05901 Uniprot:P0A602
Length = 528
Score = 168 (64.2 bits), Expect = 2.1e-09, P = 2.1e-09
Identities = 60/226 (26%), Positives = 116/226 (51%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGL 314
D +R +L LL A+EE EL +I+ + + ++L S+ G + + + +
Sbjct: 226 DSVRAYLKQIGKVALLNAEEEVELAKRIEAGLYATQLMTEL-SERGEKLPAAQRRDMMWI 284
Query: 315 SCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
CRD G+ ++ L+ ANLRLVV +AK+Y GRG++ DL+QEG++GL+++VEKF
Sbjct: 285 -CRD-------GDRAKNHLLEANLRLVVSLAKRYTGRGMAFLDLIQEGNLGLIRAVEKFD 336
Query: 375 PQAGCRFANTGVEIPDISVQKQLMRQH--VR---NLLTLLNPKERCIVRLRFGIED-GKP 428
G +F+ ++ + + Q +R +++ ++N R L ++D G+
Sbjct: 337 YTKGYKFSTYATWWIRQAITRAMADQARTIRIPVHMVEVINKLGRIQREL---LQDLGRE 393
Query: 429 KSLSEVGNIFGLSKERVRQLE--SRALYRLKQSLGGKASYGYADLL 472
+ E+ ++ E+V +++ +R L Q++G + D +
Sbjct: 394 PTPEELAKEMDITPEKVLEIQQYAREPISLDQTIGDEGDSQLGDFI 439
Score = 159 (61.0 bits), Expect = 2.1e-08, P = 2.1e-08
Identities = 27/79 (34%), Positives = 54/79 (68%)
Query: 392 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451
+V L++ ++++L L+ +E +VRLRFG+ DG+P++L E+G ++G+++ER+RQ+ES+
Sbjct: 450 AVSFTLLQDQLQSVLDTLSEREAGVVRLRFGLTDGQPRTLDEIGQVYGVTRERIRQIESK 509
Query: 452 ALYRLKQSLGGKASYGYAD 470
+ +L+ + Y D
Sbjct: 510 TMSKLRHPSRSQVLRDYLD 528
>TAIR|locus:2167413 [details] [associations]
symbol:SIGE "AT5G24120" species:3702 "Arabidopsis
thaliana" [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=ISS;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] [GO:0071483 "cellular response to blue light"
evidence=IEP] [GO:0005739 "mitochondrion" evidence=IDA] [GO:0009507
"chloroplast" evidence=IDA] [GO:0001053 "plastid sigma factor
activity" evidence=IMP] [GO:0010207 "photosystem II assembly"
evidence=IMP] [GO:2001141 "regulation of RNA biosynthetic process"
evidence=IMP] [GO:0010114 "response to red light" evidence=IEP]
[GO:0010218 "response to far red light" evidence=IEP] [GO:0009637
"response to blue light" evidence=IGI] [GO:0009658 "chloroplast
organization" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IMP] [GO:0010264
"myo-inositol hexakisphosphate biosynthetic process" evidence=RCA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0005739 EMBL:CP002688 GO:GO:0009507
GO:GO:0045893 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0010218 GO:GO:0010114
GO:GO:0009658 EMBL:AB010696 SUPFAM:SSF88946 SUPFAM:SSF88659
TIGRFAMs:TIGR02937 GO:GO:0010207 eggNOG:COG0568 HSSP:Q9EZJ8
GO:GO:0001053 KO:K03093 EMBL:AB021120 EMBL:Y18550 EMBL:AK316888
EMBL:AY045660 EMBL:AK221445 IPI:IPI00519217 PIR:T51328
RefSeq:NP_197800.1 UniGene:At.5425 ProteinModelPortal:Q9ZNX9
SMR:Q9ZNX9 STRING:Q9ZNX9 PRIDE:Q9ZNX9 EnsemblPlants:AT5G24120.1
GeneID:832477 KEGG:ath:AT5G24120 GeneFarm:28 TAIR:At5g24120
InParanoid:Q9ZNX9 OMA:NKLIKHN PhylomeDB:Q9ZNX9
ProtClustDB:CLSN2686315 Genevestigator:Q9ZNX9 GO:GO:0071483
Uniprot:Q9ZNX9
Length = 517
Score = 167 (63.8 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 61/244 (25%), Positives = 113/244 (46%)
Query: 216 LERR-SKKRKVS-KPQVTNHETYNSRKASVKKKLSE---GFDRNDPLRLFLWGP-ETRKL 269
L++R + KR V KP V + + +++ ++K+ + ++ + W + +
Sbjct: 160 LDKRIALKRNVQEKPVVASVDKKVTKRQQEEEKIERLVRDYSASNDIVSLDWKKMKIPPV 219
Query: 270 LTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSS 329
L++ E L +Q + L + K LQ GREP E A I ++ ++K ++ G ++
Sbjct: 220 LSSTEHAWLFKLMQPMKALLEVKDVLQKSLGREPREAEIAGEINMTAGEVKKKIEIGRAA 279
Query: 330 REKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGV 386
R KLI NLRLV+ V +Y G DL Q G GL+ ++++F+P+ R + G+
Sbjct: 280 RNKLIKHNLRLVLFVMNKYFHEFTNGPKFQDLCQAGMRGLITAIDRFEPKRKFRLSTYGL 339
Query: 387 E-IPDISVQKQLMRQHVRNLLTLLNPK-ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 444
I ++ R L + + E + E G+P + EV ++ ER
Sbjct: 340 FWIRHAIIRSMTTSNFTRVPFGLESVRVEIYKAKTELWFEMGRPPTEDEVVERLKITPER 399
Query: 445 VRQL 448
R++
Sbjct: 400 YREV 403
>TIGR_CMR|CJE_1081 [details] [associations]
symbol:CJE_1081 "RNA polymerase sigma factor RpoD"
species:195099 "Campylobacter jejuni RM1221" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR009042 InterPro:IPR012760 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF00140 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
ProtClustDB:PRK05658 RefSeq:YP_179074.1 ProteinModelPortal:Q5HUG1
SMR:Q5HUG1 STRING:Q5HUG1 GeneID:3231590 KEGG:cjr:CJE1081
PATRIC:20043971 OMA:ILDAICS BioCyc:CJEJ195099:GJC0-1107-MONOMER
Uniprot:Q5HUG1
Length = 622
Score = 160 (61.4 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 47/179 (26%), Positives = 94/179 (52%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLI 334
E +++ ++ +L + K + F E + + K I +K + ++ ++
Sbjct: 333 ETTMVSTYMEIKKLFQTKEASEKSFDLEKSRL---KEI---LEQIKRGKKISDEAKGRMA 386
Query: 335 NANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQ 394
+NLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+ ++
Sbjct: 387 KSNLRLVVSIAKRYTNRGLPFLDLIQEGNIGLMKAVDKFEYKRGYKFSTYATWWIRQAIS 446
Query: 395 KQLMRQH--VR---NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
+ + Q +R +++ +N + I+R +DGK +S + GLS ++V+Q+
Sbjct: 447 RAIADQARTIRIPIHMIETINQINK-IIREHLQ-KDGKEPDVSVIAKEVGLSVDKVKQV 503
Score = 133 (51.9 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 25/79 (31%), Positives = 49/79 (62%)
Query: 393 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 451
+ K +++ + +L LN +E+ ++R+RFG+ +D ++L E+G +++ERVRQ+ES
Sbjct: 541 ILKDDLKEQIDEVLDQLNDREKAVIRMRFGLMDDESDRTLEEIGKELNVTRERVRQIESS 600
Query: 452 ALYRLKQSLGGKASYGYAD 470
A+ +LK G+ Y +
Sbjct: 601 AIKKLKHPKVGRKLKNYIE 619
Score = 55 (24.4 bits), Expect = 1.4e-06, Sum P(2) = 1.4e-06
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 275 EFELIAQIQDLIRLEKEKSKLQ-----SQF--GREPTLIEWAKA 311
E + I+D RL++EK KLQ ++F E L+EW+++
Sbjct: 59 EIAQMKNIEDAKRLQEEKQKLQDTSLENEFDLANENDLLEWSRS 102
Score = 50 (22.7 bits), Expect = 4.8e-09, Sum P(2) = 4.8e-09
Identities = 19/76 (25%), Positives = 39/76 (51%)
Query: 209 QFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASVKKKLSEGFDRND-PLRLFLWGPETR 267
+ +Q + +E +K+ + K ++ + N + + L E + R+D P+R++L
Sbjct: 59 EIAQMKNIED-AKRLQEEKQKLQDTSLENEFDLANENDLLE-WSRSDSPVRMYLREMGQI 116
Query: 268 KLLTADEEFELIAQIQ 283
LL DEE E+ +I+
Sbjct: 117 ALLNKDEEIEISKKIE 132
Score = 43 (20.2 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 13/52 (25%), Positives = 29/52 (55%)
Query: 70 DEYRPLLHMFKEDKTSQATSDSRNIETEAFFVEEKNS-GDLDQLVQD-LEHQ 119
D+ + ++ + KE + +A + + FVE++NS +D +++D L+ Q
Sbjct: 498 DKVKQVIKITKEPISLEAPIGNEDDGKFGDFVEDRNSLSPMDHILKDDLKEQ 549
Score = 39 (18.8 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 263 GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302
G E + A E + +++ +I++ KE L++ G E
Sbjct: 481 GKEPDVSVIAKEVGLSVDKVKQVIKITKEPISLEAPIGNE 520
>TIGR_CMR|CBU_1909 [details] [associations]
symbol:CBU_1909 "RNA polymerase sigma-32 factor"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR009042
InterPro:IPR012759 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 GenomeReviews:AE016828_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 ProtClustDB:PRK06596 TIGRFAMs:TIGR02392
HSSP:Q9EZJ8 EMBL:AF120928 ProteinModelPortal:Q9LAQ0 PRIDE:Q9LAQ0
PATRIC:17932555 BioCyc:CBUR227377:GJ7S-1884-MONOMER Uniprot:Q9LAQ0
Length = 288
Score = 158 (60.7 bits), Expect = 6.2e-09, P = 6.2e-09
Identities = 54/181 (29%), Positives = 89/181 (49%)
Query: 283 QDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSC----RDLKSELHSGNS--SREKLINA 336
Q L R+E E+S G + I W I L DL ++ N + KL+ +
Sbjct: 3 QFLTRVE-ERSLSIGSIG---SYISWVNRIPLLSAEEEHDLANKFRQSNDLEAARKLVLS 58
Query: 337 NLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDISVQKQ 396
+LR VV +A+ Y G G+S DL+QEG++GLMK+V++F PQ G R + V + +
Sbjct: 59 HLRFVVRIARGYSGYGLSQADLIQEGNIGLMKAVKRFDPQVGVRLVSFAVHWIRAEIHEF 118
Query: 397 LMRQ-HVRNLLTLLNPKE-----RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450
+++ + + T ++ R + R D + +L+E N+ S + VRQ+E
Sbjct: 119 ILKNWRIVKIATTKAQRKLFFNLRKHAKKRGWFSDHEAFALAEELNV---STKDVRQMEE 175
Query: 451 R 451
R
Sbjct: 176 R 176
>TIGR_CMR|CBU_1596 [details] [associations]
symbol:CBU_1596 "RNA polymerase sigma factor RpoD"
species:227377 "Coxiella burnetii RSA 493" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:AE016828
GenomeReviews:AE016828_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568 EMBL:AF273254
RefSeq:NP_820579.1 HSSP:P00579 ProteinModelPortal:Q83BB6 SMR:Q83BB6
PRIDE:Q83BB6 GeneID:1209506 KEGG:cbu:CBU_1596 PATRIC:17931957
HOGENOM:HOG000270272 KO:K03086 OMA:IEMNTDH ProtClustDB:CLSK914891
BioCyc:CBUR227377:GJ7S-1575-MONOMER TIGRFAMs:TIGR02393
Uniprot:Q83BB6
Length = 698
Score = 165 (63.1 bits), Expect = 6.9e-09, P = 6.9e-09
Identities = 71/251 (28%), Positives = 123/251 (49%)
Query: 207 VKQFSQPRFLERRSKKRKVSKPQVTNHETYNSRKASV-KKKLSEGFDRNDPLRLFLWGPE 265
+KQF+ R + + + ++ Q +Y KA +KK F N+ +L E
Sbjct: 346 IKQFN--RLTGQLRRMLRAARAQERLIMSYCVVKAKTPRKKFIASFPHNETNMKWL---E 400
Query: 266 TRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325
K ++ L +++ R ++ ++L+ Q I+ K I R E S
Sbjct: 401 QYKNENKEQAKRLEKYSKEIYRAQRNLAQLEEQNNLN---IQEIKEINR--RVAIGEAKS 455
Query: 326 GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTG 385
+ +E +I ANLRLV+ +AK+Y RG+ DL+QEG++GLMK+V+KF+ + G +F+
Sbjct: 456 RRAKKE-MIEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYA 514
Query: 386 V-----EIP-DISVQKQLMRQHVRNLLTL--LNPKERCIVRLRFGIEDGKPKSLSEVGNI 437
I I+ Q + +R V + T+ LN R I++ GIE P+ E+G
Sbjct: 515 TWWIRQAITRSIADQARTIRIPVHMIETINKLNRISRQILQ-ETGIE-ATPE---ELGRR 569
Query: 438 FGLSKERVRQL 448
+ +E+VR++
Sbjct: 570 MDMPEEKVRKV 580
Score = 132 (51.5 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 28/73 (38%), Positives = 48/73 (65%)
Query: 386 VEIP-DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKER 444
+E P D + LM + R +L+ L P+E ++R+RFGI+ +L EVG F +++ER
Sbjct: 611 MESPVDFATSAGLM-EATREILSTLTPREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRER 669
Query: 445 VRQLESRALYRLK 457
+RQ+E++AL +L+
Sbjct: 670 IRQIEAKALRKLR 682
Score = 45 (20.9 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 10/33 (30%), Positives = 21/33 (63%)
Query: 255 DPLRLFLWGPETRKLLTADEEFELIAQIQDLIR 287
DP+R+++ + +LLT + E + +I++ IR
Sbjct: 185 DPVRMYMREMGSVELLTREGEIVIAKRIEEGIR 217
>UNIPROTKB|P0AGB3 [details] [associations]
symbol:rpoH species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0016987 "sigma
factor activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA;IMP] [GO:0009408
"response to heat" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0006352 "DNA-dependent transcription, initiation"
evidence=IEA] [GO:0003700 "sequence-specific DNA binding
transcription factor activity" evidence=IEA] [GO:0006950 "response
to stress" evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0006355
EMBL:U00039 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0008270 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
EMBL:J05516 EMBL:M20668 EMBL:K02177 PIR:H65142 RefSeq:NP_417918.1
RefSeq:YP_491973.1 ProteinModelPortal:P0AGB3 SMR:P0AGB3
DIP:DIP-46203N IntAct:P0AGB3 PRIDE:P0AGB3 DNASU:947970
EnsemblBacteria:EBESCT00000004588 EnsemblBacteria:EBESCT00000004589
EnsemblBacteria:EBESCT00000004590 EnsemblBacteria:EBESCT00000004591
EnsemblBacteria:EBESCT00000004592 EnsemblBacteria:EBESCT00000004593
EnsemblBacteria:EBESCT00000018203 GeneID:12933503 GeneID:947970
KEGG:ecj:Y75_p3717 KEGG:eco:b3461 PATRIC:32122366 EchoBASE:EB0890
EcoGene:EG10897 eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
OMA:LNNDEVH ProtClustDB:PRK06596 BioCyc:EcoCyc:RPOH-MONOMER
BioCyc:ECOL316407:JW3426-MONOMER BioCyc:MetaCyc:RPOH-MONOMER
Genevestigator:P0AGB3 TIGRFAMs:TIGR02392 Uniprot:P0AGB3
Length = 284
Score = 157 (60.3 bits), Expect = 7.7e-09, P = 7.7e-09
Identities = 45/144 (31%), Positives = 74/144 (51%)
Query: 317 RDLKSELH-SGNSSREK-LINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFK 374
R L +LH G+ K LI ++LR VVH+A+ Y G G+ DL+QEG++GLMK+V +F
Sbjct: 35 RALAEKLHYHGDLEAAKTLILSHLRFVVHIARNYAGYGLPQADLIQEGNIGLMKAVRRFN 94
Query: 375 PQAGCRFANTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK----- 429
P+ G R + V + + ++R R + +R +L F + K +
Sbjct: 95 PEVGVRLVSFAVHWIKAEIHEYVLRNW-RIVKVATTKAQR---KLFFNLRKTKQRLGWFN 150
Query: 430 --SLSEVGNIFGLSKERVRQLESR 451
+ V G++ + VR++ESR
Sbjct: 151 QDEVEMVARELGVTSKDVREMESR 174
>TIGR_CMR|APH_0576 [details] [associations]
symbol:APH_0576 "RNA polymerase sigma factor RpoD"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393 OMA:KISFICE
ProtClustDB:CLSK749621 RefSeq:YP_505167.1 ProteinModelPortal:Q2GKD4
SMR:Q2GKD4 STRING:Q2GKD4 GeneID:3930981 KEGG:aph:APH_0576
PATRIC:20949818 BioCyc:APHA212042:GHPM-600-MONOMER Uniprot:Q2GKD4
Length = 627
Score = 159 (61.0 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 38/129 (29%), Positives = 76/129 (58%)
Query: 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANT 384
+ N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLMK+V+KF + G +F+
Sbjct: 386 TANRAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLMKAVDKFDYKRGYKFSTY 445
Query: 385 GVEIPDISVQKQLMRQH--VR---NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG 439
++ + + Q +R +++ +N R + ++ I G+ +L E+
Sbjct: 446 ATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLHEI--GREPTLEELSARLN 503
Query: 440 LSKERVRQL 448
++ E++R++
Sbjct: 504 INVEKIRKV 512
Score = 142 (55.0 bits), Expect = 5.8e-08, Sum P(4) = 5.8e-08
Identities = 28/72 (38%), Positives = 48/72 (66%)
Query: 398 MRQHVRNLLTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRALYRL 456
+R+ +L+ L PKE I+R+RFGI + GK +L EVG +F +++ER+RQ+E++AL +L
Sbjct: 555 LREITTKVLSTLTPKEERILRMRFGIGKSGKDHTLEEVGRLFNVTRERIRQIEAKALRKL 614
Query: 457 KQSLGGKASYGY 468
+ + G+
Sbjct: 615 RHPSRARKLRGF 626
Score = 47 (21.6 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+DP+R++L + +LL+ + E E+ +I+
Sbjct: 96 DDPIRMYLCEMSSVELLSREGEIEIAKRIK 125
Score = 46 (21.3 bits), Expect = 5.8e-08, Sum P(4) = 5.8e-08
Identities = 8/42 (19%), Positives = 23/42 (54%)
Query: 279 IAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLK 320
+ I+ + ++ + ++ + GREPTL E + + ++ ++
Sbjct: 469 VHMIETVNKINRTLRQMLHEIGREPTLEELSARLNINVEKIR 510
Score = 40 (19.1 bits), Expect = 8.9e-09, Sum P(3) = 8.9e-09
Identities = 8/23 (34%), Positives = 15/23 (65%)
Query: 137 EDPSVSLTMQSLSNDTEESVDAE 159
+D +S+ QS +DT+++V E
Sbjct: 53 QDSGISVLEQSDVDDTDDTVTGE 75
>TIGR_CMR|ECH_0760 [details] [associations]
symbol:ECH_0760 "RNA polymerase sigma factor RpoD"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] InterPro:IPR000943
InterPro:IPR007127 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR007631 InterPro:IPR009042
InterPro:IPR012760 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF00140 Pfam:PF03979 Pfam:PF04539
Pfam:PF04542 Pfam:PF04545 Pfam:PF04546 PRINTS:PR00046
PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270272 KO:K03086 TIGRFAMs:TIGR02393
RefSeq:YP_507558.1 ProteinModelPortal:Q2GG75 SMR:Q2GG75
STRING:Q2GG75 GeneID:3927201 KEGG:ech:ECH_0760 PATRIC:20576954
OMA:KISFICE ProtClustDB:CLSK749621
BioCyc:ECHA205920:GJNR-763-MONOMER Uniprot:Q2GG75
Length = 622
Score = 161 (61.7 bits), Expect = 1.6e-08, P = 1.6e-08
Identities = 57/206 (27%), Positives = 106/206 (51%)
Query: 248 SEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIE 307
S G R D L + +K T+ + ++ + I K KL S G E L E
Sbjct: 311 SYGIQRKDFLDAYNTNSVLQKKGTSPQWDNMLLNEESNIVSMYSKIKLLS--G-ENNLTE 367
Query: 308 WAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLM 367
+ KA+ + K E + N +++++I ANLRLVV +AK+Y RG+ DL+QEG++GLM
Sbjct: 368 F-KALVTKIQ--KHE-RAANQAKQEMIKANLRLVVSIAKKYSNRGLQFLDLVQEGNIGLM 423
Query: 368 KSVEKFKPQAGCRFANTGVEIPDISVQKQLMRQH--VR---NLLTLLNPKERCIVRLRFG 422
K+V+KF + G +F+ ++ + + Q +R +++ +N R + ++
Sbjct: 424 KAVDKFDYKRGYKFSTYATWWVRQAITRAIADQARTIRIPVHMIETVNKINRTLRQMLH- 482
Query: 423 IEDGKPKSLSEVGNIFGLSKERVRQL 448
E G+ +L E+ ++ +++R++
Sbjct: 483 -EMGREPTLEELSARLNINVDKIRKV 507
Score = 142 (55.0 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 32/84 (38%), Positives = 53/84 (63%)
Query: 386 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKER 444
V+ D +V L R+ +L+ L PKE I+R+RFGI + GK +L EVG +F +++ER
Sbjct: 539 VKPEDAAVLADL-REITTKVLSTLTPKEERILRMRFGIGKGGKDHTLEEVGKLFNVTRER 597
Query: 445 VRQLESRALYRLKQSLGGKASYGY 468
+RQ+E++AL +L+ + G+
Sbjct: 598 IRQIEAKALRKLRHPSRARKLRGF 621
Score = 47 (21.6 bits), Expect = 9.6e-07, Sum P(2) = 9.6e-07
Identities = 9/30 (30%), Positives = 20/30 (66%)
Query: 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQ 283
+DP+R++L + +LL+ + E E+ +I+
Sbjct: 98 DDPIRMYLCEMSSVELLSREGEIEIAKKIK 127
>TIGR_CMR|SO_4583 [details] [associations]
symbol:SO_4583 "RNA polymerase sigma-32 factor"
species:211586 "Shewanella oneidensis MR-1" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR012759 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0008270 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0009408 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:PRK06596 TIGRFAMs:TIGR02392 HSSP:Q9EZJ8 OMA:EIAYAER
RefSeq:NP_720099.1 ProteinModelPortal:Q8E8S8 GeneID:1172168
KEGG:son:SO_4583 PATRIC:23528833 Uniprot:Q8E8S8
Length = 285
Score = 154 (59.3 bits), Expect = 1.8e-08, P = 1.8e-08
Identities = 42/128 (32%), Positives = 68/128 (53%)
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPD 390
++LI ++LR VVHVAK Y G G+ DL+QEG++GLMK+V++F P G R + V
Sbjct: 54 KQLIMSHLRFVVHVAKGYAGYGLPQADLIQEGNIGLMKAVKRFDPDVGVRLVSFAVHWIK 113
Query: 391 ISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK-------SLSEVGNIFGLSKE 443
+ + +++ R + +R +L F I K + ++ V G+SK
Sbjct: 114 AEIHEYVLKNW-RIVKVATTKAQR---KLFFNIRKAKTRLGWFSDDEVTMVAENLGVSKA 169
Query: 444 RVRQLESR 451
V ++ESR
Sbjct: 170 DVTEMESR 177
>UNIPROTKB|Q84JN3 [details] [associations]
symbol:SIG5 "Os05g0586600 protein" species:39947 "Oryza
sativa Japonica Group" [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IDA] [GO:0009536 "plastid" evidence=IDA]
[GO:0016987 "sigma factor activity" evidence=IDA]
InterPro:IPR000943 InterPro:IPR007624 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 GO:GO:0009536 GO:GO:0003677 GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009637
GO:GO:0010218 GO:GO:0010114 EMBL:AP008211 GO:GO:0016987
GO:GO:0003899 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HSSP:Q9EZJ8 KO:K03093 OMA:NKLIKHN ProtClustDB:CLSN2686315
EMBL:AB096011 EMBL:AB096071 RefSeq:NP_001056463.1 UniGene:Os.57417
EnsemblPlants:LOC_Os05g50930.1 GeneID:4339759 KEGG:osa:4339759
Uniprot:Q84JN3
Length = 500
Score = 155 (59.6 bits), Expect = 5.2e-08, P = 5.2e-08
Identities = 48/195 (24%), Positives = 91/195 (46%)
Query: 269 LLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNS 328
+LT+ + L +Q + + + K L+++ EP + A+A+ +S ++ L G +
Sbjct: 203 VLTSAQSIRLFRIMQPMKAIMEMKENLENEVQSEPNDAQLAEAMNMSVLQMRRHLEVGRA 262
Query: 329 SREKLINANLRLVVHVAKQY---QGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTG 385
+R KLI NLRLV++ +Y D+ Q G+ GL+ ++++F+P+ G R +
Sbjct: 263 ARNKLIKHNLRLVLYTINKYYPDMSNDERFDDICQAGANGLITAIDRFEPKRGFRISTYA 322
Query: 386 VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLR--FGIEDGKPKSLSEVGNIFGLSKE 443
+ S+ + + + + + + I R R E G+ + EV GLS
Sbjct: 323 LFWIRHSIVRAITLSNFTRFPFAMESERQEIHRAREELAFELGRAPTEEEVMKKVGLSPA 382
Query: 444 RVRQLE--SRALYRL 456
R R + +R Y L
Sbjct: 383 RYRDVVRMTRPTYSL 397
Score = 124 (48.7 bits), Expect = 0.00014, P = 0.00014
Identities = 29/69 (42%), Positives = 43/69 (62%)
Query: 390 DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPK-SLSEVGNIFGLSKERVRQL 448
D S L+R + +LL L PKE ++R RFG+ DG+ K +LSE+ +S+E VR+
Sbjct: 421 DTSSHNTLLRLAIDDLLDSLKPKESVVIRQRFGL-DGRGKRTLSEIAGNLNISREMVRKY 479
Query: 449 ESRALYRLK 457
E +AL +LK
Sbjct: 480 ELKALMKLK 488
>TIGR_CMR|BA_4042 [details] [associations]
symbol:BA_4042 "RNA polymerase sigma-G factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014212 InterPro:IPR014284 InterPro:IPR014322
Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046 PROSITE:PS00715
PROSITE:PS00716 EMBL:AE016879 EMBL:AE017334
GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HSSP:P00579 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
OMA:QISDERN ProtClustDB:PRK08215 TIGRFAMs:TIGR02850
RefSeq:NP_846282.1 RefSeq:YP_020684.2 ProteinModelPortal:Q81WD6
DNASU:1086511 EnsemblBacteria:EBBACT00000008607
EnsemblBacteria:EBBACT00000015378 GeneID:1086511 GeneID:2816830
KEGG:ban:BA_4042 KEGG:bar:GBAA_4042 PATRIC:18785676
BioCyc:BANT261594:GJ7F-3930-MONOMER Uniprot:Q81WD6
Length = 259
Score = 147 (56.8 bits), Expect = 7.8e-08, P = 7.8e-08
Identities = 39/132 (29%), Positives = 71/132 (53%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
R L E+ SG S+REKL+N NLRLV+ V +++ RG + DL Q G +GLMKS++ F
Sbjct: 25 RKLFREMQSGEISAREKLVNGNLRLVLSVIQRFNNRGEYVDDLFQVGCIGLMKSIDNFDL 84
Query: 376 QAGCRFANTGVEIPDISVQKQLMRQH-VRNLLTLLNPKERCI-VRLRFGIEDGKPKSLSE 433
+F+ V + +++ L + +R +L + + + VR + E+ K + +
Sbjct: 85 GQNVKFSTYAVPMIIGEIRRYLRDNNPIRVSRSLRDIAYKALQVREKLIAENSKEPTAMD 144
Query: 434 VGNIFGLSKERV 445
+ + ++ E +
Sbjct: 145 IAKVLEVTHEEI 156
>TIGR_CMR|ECH_0655 [details] [associations]
symbol:ECH_0655 "RNA polymerase sigma-32 factor"
species:205920 "Ehrlichia chaffeensis str. Arkansas" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_507464.1
ProteinModelPortal:Q2GGG9 STRING:Q2GGG9 GeneID:3928045
KEGG:ech:ECH_0655 PATRIC:20576762 OMA:HHLVTSH
ProtClustDB:CLSK749586 BioCyc:ECHA205920:GJNR-657-MONOMER
Uniprot:Q2GGG9
Length = 297
Score = 109 (43.4 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/55 (38%), Positives = 37/55 (67%)
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGV 386
+L+ ++LRLVV VA ++ + L +L+ EG++GLM++V+KF P G R + +
Sbjct: 50 RLVTSHLRLVVKVALSFKNYELPLIELIMEGNIGLMQAVKKFNPTLGFRLSTYAI 104
Score = 82 (33.9 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 24/69 (34%), Positives = 42/69 (60%)
Query: 390 DISVQKQLMRQHVRNLLTLLNPKERCI-VRLRFGIEDGKPKSLSEVGNIFGLSKERVRQL 448
+++++K L+ Q L+ LN + R I +R R IE+ P +L ++ + +SKERVRQ+
Sbjct: 219 ELNIKKALISQ----ALSTLNERYRDIFIRRRL-IEE--PDTLDKLSQEYNISKERVRQI 271
Query: 449 ESRALYRLK 457
E A ++K
Sbjct: 272 EMHAFTKVK 280
>TIGR_CMR|CHY_2055 [details] [associations]
symbol:CHY_2055 "RNA polymerase sigma-G factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014212 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 RefSeq:YP_360874.1
ProteinModelPortal:Q3AAG0 STRING:Q3AAG0 GeneID:3726360
KEGG:chy:CHY_2055 PATRIC:21277191 OMA:QISDERN ProtClustDB:PRK08215
BioCyc:CHYD246194:GJCN-2054-MONOMER TIGRFAMs:TIGR02850
Uniprot:Q3AAG0
Length = 257
Score = 111 (44.1 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/58 (36%), Positives = 38/58 (65%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGV 386
+R+KLI+ NLRLV+ + +++ RG + DL Q G +GL+K+++ F + +F+ V
Sbjct: 38 ARQKLISGNLRLVLSIIQRFTNRGEYVDDLFQVGCIGLIKAIDNFDLEQNVKFSTYAV 95
Score = 77 (32.2 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 21/57 (36%), Positives = 34/57 (59%)
Query: 402 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458
++ L LN +ER I++LRF +GK + EV G+S+ +V +LE AL L++
Sbjct: 203 LKEALERLNERERLILKLRF--YEGKTQM--EVAEEIGISQAQVSRLEKAALNHLRK 255
>TIGR_CMR|CHY_1959 [details] [associations]
symbol:CHY_1959 "RNA polymerase sigma-F factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS] [GO:0042173
"regulation of sporulation resulting in formation of a cellular
spore" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG1191 KO:K03091
HOGENOM:HOG000270270 TIGRFAMs:TIGR02980 TIGRFAMs:TIGR02885
RefSeq:YP_360778.1 ProteinModelPortal:Q3AAQ6 STRING:Q3AAQ6
GeneID:3726621 KEGG:chy:CHY_1959 PATRIC:21277005 OMA:PRERYIL
ProtClustDB:CLSK941224 BioCyc:CHYD246194:GJCN-1958-MONOMER
Uniprot:Q3AAQ6
Length = 257
Score = 138 (53.6 bits), Expect = 8.6e-07, P = 8.6e-07
Identities = 44/144 (30%), Positives = 77/144 (53%)
Query: 317 RDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375
++L + G+ ++REKLIN NL+LV V +++ RG + DL Q G++GL+K+++KF
Sbjct: 22 KELIEKAQKGDVAAREKLINCNLKLVFKVVERFLHRGYEVEDLFQIGTIGLIKAIDKFDL 81
Query: 376 QAGCRFANTGV-----EIPDISVQKQLMR--QHVRNL-LTLLNPKERCIVRLRFGIEDGK 427
+ +F+ V EI Q +R + + L + +L KE V+L G+
Sbjct: 82 KQQVKFSTYAVPMIVGEIRRFLRDDQAIRISRSTKELGVKILKEKEALTVKL------GR 135
Query: 428 PKSLSEVGNIFGLSKER-VRQLES 450
+++E+ G S+E V LE+
Sbjct: 136 EPTIAELEETLGYSREAIVEALEA 159
Score = 89 (36.4 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 27/115 (23%), Positives = 57/115 (49%)
Query: 265 ETRKLLTADEEFELIAQIQDL-IRLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323
E R+ L D+ + ++L +++ KEK L + GREPT+ E + +G S + L
Sbjct: 98 EIRRFLRDDQAIRISRSTKELGVKILKEKEALTVKLGREPTIAELEETLGYSREAIVEAL 157
Query: 324 HSGNS--SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQ 376
+G S S + ++ + +++ Q + G LL+ ++ + + + K +P+
Sbjct: 158 EAGQSLASLFETVHQDDGDPIYLLDQIKQEGDEEQTLLE--NISIKEVLSKLEPR 210
Score = 82 (33.9 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 21/59 (35%), Positives = 36/59 (61%)
Query: 402 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460
++ +L+ L P+ER I+ RF K K+ E+ G+S+ +V +LE +AL +LK+ L
Sbjct: 200 IKEVLSKLEPRERYILINRFF----KEKTQMEIARTLGISQVQVSRLERQALLKLKRYL 254
>TIGR_CMR|SPO_1409 [details] [associations]
symbol:SPO_1409 "RNA polymerase sigma-32 factor"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=ISS] [GO:0009408 "response to
heat" evidence=ISS] [GO:0016987 "sigma factor activity"
evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR009042 InterPro:IPR012759
InterPro:IPR013324 InterPro:IPR013325 InterPro:IPR014284
Pfam:PF00140 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 EMBL:CP000031 GenomeReviews:CP000031_GR
GO:GO:0003677 GO:GO:0008270 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0009408 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
HOGENOM:HOG000270269 KO:K03089 ProtClustDB:PRK06596
TIGRFAMs:TIGR02392 RefSeq:YP_166650.1 ProteinModelPortal:Q5LTK5
GeneID:3195142 KEGG:sil:SPO1409 PATRIC:23376133 OMA:HESQEEM
Uniprot:Q5LTK5
Length = 298
Score = 130 (50.8 bits), Expect = 1.1e-05, P = 1.1e-05
Identities = 32/131 (24%), Positives = 72/131 (54%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEI 388
S K++ ++LRL +A Y+G G+ +++ E ++GLM++V++F P+ G R A +
Sbjct: 49 SAHKMVTSHLRLAAKIAMGYRGYGLPQAEVISEANVGLMQAVKRFDPEKGFRLATYAMWW 108
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLR-----FG-IEDG--KPKSLSEVGNIFGL 440
++Q+ ++R L + +++ LR G +E+G +P++++ + + G+
Sbjct: 109 IRAAIQEYILRSWSLVKLGTTSAQKKLFFNLRKAKAKIGALEEGDLRPENVARIAHDLGV 168
Query: 441 SKERVRQLESR 451
S++ V + R
Sbjct: 169 SEDDVISMNRR 179
>TIGR_CMR|APH_0759 [details] [associations]
symbol:APH_0759 "RNA polymerase sigma-32 factor"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
eggNOG:COG0568 HOGENOM:HOG000270269 KO:K03089
ProtClustDB:CLSK749586 RefSeq:YP_505338.1 ProteinModelPortal:Q2GJW3
STRING:Q2GJW3 GeneID:3930206 KEGG:aph:APH_0759 PATRIC:20950212
OMA:ADTHRET BioCyc:APHA212042:GHPM-775-MONOMER Uniprot:Q2GJW3
Length = 289
Score = 127 (49.8 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 25/68 (36%), Positives = 45/68 (66%)
Query: 332 KLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEIPDI 391
KL+ ++LRLVV VA ++ G+ L +L+ EG++GLM++V+KF P+ G R + +
Sbjct: 50 KLVTSHLRLVVKVAMGFRSYGLPLMELIMEGNIGLMQAVKKFNPELGFRLSTYAIWWIKA 109
Query: 392 SVQKQLMR 399
S++ ++R
Sbjct: 110 SIKDYILR 117
>TIGR_CMR|NSE_0341 [details] [associations]
symbol:NSE_0341 "RNA polymerase sigma-32 factor"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0009408
"response to heat" evidence=ISS] [GO:0016987 "sigma factor
activity" evidence=ISS] InterPro:IPR000943 InterPro:IPR007627
InterPro:IPR007630 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545 PRINTS:PR00046
PROSITE:PS00716 GO:GO:0003677 GO:GO:0003700 GO:GO:0006352
Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:CP000237
GenomeReviews:CP000237_GR GO:GO:0016987 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 eggNOG:COG0568
HOGENOM:HOG000270269 KO:K03089 RefSeq:YP_506230.1 STRING:Q2GE66
GeneID:3931426 KEGG:nse:NSE_0341 PATRIC:22680769 OMA:AINEYVI
ProtClustDB:CLSK2528041 BioCyc:NSEN222891:GHFU-366-MONOMER
Uniprot:Q2GE66
Length = 288
Score = 126 (49.4 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 36/133 (27%), Positives = 61/133 (45%)
Query: 323 LHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
+H S+ ++L+ A LRLVV V +++ G L DL EG++GLMK+++ F P G A
Sbjct: 40 VHRDISAAQRLVEAYLRLVVKVTVRFRNYGFPLMDLASEGNIGLMKAIKNFNPTLGHGIA 99
Query: 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSE------VGN 436
+ ++ + ++R + + R LR G L E +
Sbjct: 100 TYAIWWIKAAINEYVIRSWSMVKIGTTAAQRRLFFNLRKLKNSGSVAGLDENQVVKRISE 159
Query: 437 IFGLSKERVRQLE 449
I +SK V ++E
Sbjct: 160 ILAVSKNDVEEME 172
>UNIPROTKB|O32728 [details] [associations]
symbol:O32728 "RNA polymerase sigma factor" species:1422
"Geobacillus stearothermophilus" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
TIGRFAMs:TIGR02980 EMBL:L47360 PDB:1L0O PDBsum:1L0O
ProteinModelPortal:O32728 SMR:O32728 IntAct:O32728
EvolutionaryTrace:O32728 TIGRFAMs:TIGR02885 Uniprot:O32728
Length = 250
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 37/134 (27%), Positives = 66/134 (49%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEI 388
+R+++I N+RLV V +++ RG DL Q G +GL+KSV+KF +F+ V +
Sbjct: 31 ARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPM 90
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVR 446
+Q+ L + L I + + + G+ +++E+ + G+S E V
Sbjct: 91 IIGEIQRFLRDDGTVKVSRSLKEMGNKIRKAKDELSKTRGRSPTITEIADHLGISPEDV- 149
Query: 447 QLESRALYRLKQSL 460
L A+ RL S+
Sbjct: 150 VLAQEAV-RLPTSI 162
>TIGR_CMR|BA_4294 [details] [associations]
symbol:BA_4294 "RNA polymerase sigma-F factor"
species:198094 "Bacillus anthracis str. Ames" [GO:0006352
"DNA-dependent transcription, initiation" evidence=ISS] [GO:0016987
"sigma factor activity" evidence=ISS] [GO:0030436 "asexual
sporulation" evidence=ISS] InterPro:IPR000943 InterPro:IPR007624
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014236 InterPro:IPR014284
InterPro:IPR014322 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0016987 SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
KO:K03091 HOGENOM:HOG000270270 TIGRFAMs:TIGR02980
TIGRFAMs:TIGR02885 RefSeq:NP_846527.1 RefSeq:YP_020937.1
RefSeq:YP_030233.1 HSSP:O32728 ProteinModelPortal:Q81MF5 SMR:Q81MF5
DNASU:1088482 EnsemblBacteria:EBBACT00000012570
EnsemblBacteria:EBBACT00000017412 EnsemblBacteria:EBBACT00000022371
GeneID:1088482 GeneID:2818699 GeneID:2850307 KEGG:ban:BA_4294
KEGG:bar:GBAA_4294 KEGG:bat:BAS3983 OMA:IRRSQEG
ProtClustDB:PRK05572 BioCyc:BANT260799:GJAJ-4040-MONOMER
BioCyc:BANT261594:GJ7F-4178-MONOMER Uniprot:Q81MF5
Length = 252
Score = 115 (45.5 bits), Expect = 0.00037, P = 0.00037
Identities = 37/128 (28%), Positives = 63/128 (49%)
Query: 329 SREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTGVEI 388
+R+ ++ +N+RLV V +++ RG DL Q G +GL+KSV+KF +F+ V +
Sbjct: 33 ARDTIVQSNMRLVWSVVQRFLNRGYEPDDLFQIGCIGLLKSVDKFDLSFDVKFSTYAVPM 92
Query: 389 PDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERV- 445
+Q+ L + L I ++R + E G+ +++EV L+ E V
Sbjct: 93 IIGEIQRFLRDDGSVKVSRSLKETGNKIRKMRDELSKEFGRAPTINEVAEALELTPEEVV 152
Query: 446 -RQLESRA 452
Q SRA
Sbjct: 153 LAQEASRA 160
>UNIPROTKB|P0AEM6 [details] [associations]
symbol:fliA "RNA polymerase, sigma 28 (sigma F) factor"
species:83333 "Escherichia coli K-12" [GO:0006352 "DNA-dependent
transcription, initiation" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016987
"sigma factor activity" evidence=IEA] InterPro:IPR000943
InterPro:IPR007624 InterPro:IPR007627 InterPro:IPR007630
InterPro:IPR012845 InterPro:IPR013324 InterPro:IPR013325
InterPro:IPR014284 Pfam:PF04539 Pfam:PF04542 Pfam:PF04545
PRINTS:PR00046 PROSITE:PS00715 PROSITE:PS00716 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006352 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0016987 GO:GO:0003899 SUPFAM:SSF88946
SUPFAM:SSF88659 TIGRFAMs:TIGR02937 EMBL:L36677 EMBL:U18539
PIR:JC4346 RefSeq:NP_416432.3 RefSeq:YP_490179.1
ProteinModelPortal:P0AEM6 SMR:P0AEM6 DIP:DIP-47959N IntAct:P0AEM6
MINT:MINT-1250982 PRIDE:P0AEM6 EnsemblBacteria:EBESCT00000000857
EnsemblBacteria:EBESCT00000000858 EnsemblBacteria:EBESCT00000015311
GeneID:12930662 GeneID:948824 KEGG:ecj:Y75_p1893 KEGG:eco:b1922
PATRIC:32119179 EchoBASE:EB1330 EcoGene:EG11355 eggNOG:COG1191
HOGENOM:HOG000270271 KO:K02405 OMA:TYAITRI ProtClustDB:PRK06986
BioCyc:EcoCyc:EG11355-MONOMER BioCyc:ECOL316407:JW1907-MONOMER
BioCyc:MetaCyc:EG11355-MONOMER Genevestigator:P0AEM6
TIGRFAMs:TIGR02479 Uniprot:P0AEM6
Length = 239
Score = 80 (33.2 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 20/64 (31%), Positives = 35/64 (54%)
Query: 398 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457
+RQ V + L +E+ ++ L + E +L E+G + + + RV QL S+A+ RL+
Sbjct: 178 LRQRVMEAIETLPEREKLVLTLYYQEE----LNLKEIGAVLEVGESRVSQLHSQAIKRLR 233
Query: 458 QSLG 461
LG
Sbjct: 234 TKLG 237
Score = 75 (31.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 21/65 (32%), Positives = 31/65 (47%)
Query: 326 GNSSREKLINANLRLVVHVAKQYQGR---GISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382
G + L + LV H A + Q R + L DLLQ G +GL+ +VE++ G F
Sbjct: 9 GVMDKHSLWQRYVPLVRHEALRLQVRLPASVELDDLLQAGGIGLLNAVERYDALQGTAFT 68
Query: 383 NTGVE 387
V+
Sbjct: 69 TYAVQ 73
>TIGR_CMR|CHY_0143 [details] [associations]
symbol:CHY_0143 "RNA polymerase sigma-70 factor"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0006352 "DNA-dependent transcription, initiation" evidence=ISS]
[GO:0016987 "sigma factor activity" evidence=ISS]
InterPro:IPR007627 InterPro:IPR007630 InterPro:IPR013324
InterPro:IPR013325 InterPro:IPR014284 Pfam:PF04542 Pfam:PF04545
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0003700
GO:GO:0006352 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0016987
SUPFAM:SSF88946 SUPFAM:SSF88659 TIGRFAMs:TIGR02937
RefSeq:YP_359015.1 ProteinModelPortal:Q3AFR9 STRING:Q3AFR9
GeneID:3727112 KEGG:chy:CHY_0143 PATRIC:21273477
eggNOG:firmNOG17516 BioCyc:CHYD246194:GJCN-143-MONOMER
Uniprot:Q3AFR9
Length = 175
Score = 83 (34.3 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 17/51 (33%), Positives = 32/51 (62%)
Query: 331 EKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRF 381
E+L+N L+ A++Y+ ++ DL+QEG + +++SV +F P+ G F
Sbjct: 19 EELLNYLRPLIKKAAQRYRNPYLTEEDLMQEGMIAVIESVYRFDPERGVYF 69
Score = 64 (27.6 bits), Expect = 0.00079, Sum P(2) = 0.00079
Identities = 18/51 (35%), Positives = 29/51 (56%)
Query: 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458
+L P++ ++ L++ E G SLSEV I ++ LE RAL +LK+
Sbjct: 121 VLTPRQESLITLKY--ERGI--SLSEVAKILKITPAGAYDLEKRALNKLKK 167
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 473 426 0.00085 118 3 11 22 0.43 34
34 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 54
No. of states in DFA: 611 (65 KB)
Total size of DFA: 248 KB (2135 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 39.15u 0.16s 39.31t Elapsed: 00:00:01
Total cpu time: 39.16u 0.17s 39.33t Elapsed: 00:00:01
Start: Tue May 21 04:01:16 2013 End: Tue May 21 04:01:17 2013