Query 011992
Match_columns 473
No_of_seqs 379 out of 2636
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 19:28:14 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011992.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011992hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1l9z_H Sigma factor SIGA; heli 100.0 2E-31 6.8E-36 280.1 21.3 217 254-470 93-438 (438)
2 2a6h_F RNA polymerase sigma fa 100.0 3.3E-31 1.1E-35 277.6 13.1 217 254-470 78-423 (423)
3 3ugo_A RNA polymerase sigma fa 99.9 8.3E-25 2.9E-29 213.8 9.2 199 254-457 6-244 (245)
4 3iyd_F RNA polymerase sigma fa 99.8 2.9E-22 9.9E-27 218.5 2.5 155 316-470 358-612 (613)
5 2q1z_A RPOE, ECF SIGE; ECF sig 99.8 2.4E-20 8.1E-25 170.0 11.7 142 314-460 11-183 (184)
6 1rp3_A RNA polymerase sigma fa 99.8 1E-19 3.4E-24 171.3 15.4 131 328-462 12-237 (239)
7 1or7_A Sigma-24, RNA polymeras 99.8 1.6E-19 5.5E-24 165.6 12.4 140 316-462 10-190 (194)
8 1l0o_C Sigma factor; bergerat 99.7 1.6E-19 5.5E-24 169.6 0.3 138 316-457 15-243 (243)
9 3mzy_A RNA polymerase sigma-H 99.6 9.2E-16 3.2E-20 135.8 11.2 107 352-464 1-160 (164)
10 2lfw_A PHYR sigma-like domain; 99.6 1E-17 3.5E-22 151.3 -5.1 125 330-464 3-145 (157)
11 3t72_q RNA polymerase sigma fa 99.5 7.5E-14 2.6E-18 118.8 10.2 79 392-470 3-81 (99)
12 3n0r_A Response regulator; sig 99.5 2.8E-14 9.5E-19 141.2 5.5 126 325-461 18-160 (286)
13 1tty_A Sigma-A, RNA polymerase 99.3 2E-12 6.8E-17 106.4 7.1 73 399-471 9-81 (87)
14 3hug_A RNA polymerase sigma fa 99.3 7.5E-12 2.6E-16 103.6 10.4 76 385-464 14-89 (92)
15 1ku3_A Sigma factor SIGA; heli 99.3 1.4E-12 4.8E-17 103.5 3.7 68 402-469 4-72 (73)
16 2p7v_B Sigma-70, RNA polymeras 99.2 3.9E-12 1.3E-16 99.6 3.9 66 405-470 2-67 (68)
17 2o8x_A Probable RNA polymerase 99.1 2.7E-10 9.2E-15 88.3 6.9 65 397-465 4-68 (70)
18 1xsv_A Hypothetical UPF0122 pr 98.9 2.8E-09 9.6E-14 92.2 9.3 69 393-465 9-78 (113)
19 1s7o_A Hypothetical UPF0122 pr 98.8 1E-08 3.4E-13 88.8 7.2 65 397-465 10-75 (113)
20 3clo_A Transcriptional regulat 98.8 6.3E-10 2.1E-14 108.1 -0.6 135 318-459 86-243 (258)
21 1sig_A Sigma70, RNA polymerase 98.7 1.5E-08 5.2E-13 102.4 7.4 77 308-384 238-321 (339)
22 3c57_A Two component transcrip 98.6 8.5E-08 2.9E-12 79.9 6.5 60 397-461 16-75 (95)
23 2rnj_A Response regulator prot 98.6 2.6E-08 8.9E-13 82.1 3.3 62 393-459 14-75 (91)
24 1x3u_A Transcriptional regulat 98.6 9.7E-08 3.3E-12 75.7 6.4 54 400-458 8-61 (79)
25 1je8_A Nitrate/nitrite respons 98.4 1.4E-07 4.9E-12 76.5 4.8 56 400-460 13-68 (82)
26 1jhg_A Trp operon repressor; c 98.4 3.3E-07 1.1E-11 78.2 5.2 63 399-462 25-91 (101)
27 1fse_A GERE; helix-turn-helix 98.3 8.3E-07 2.8E-11 69.1 5.2 52 402-458 5-56 (74)
28 3ulq_B Transcriptional regulat 98.1 5.9E-06 2E-10 68.4 6.4 49 404-457 25-73 (90)
29 2jpc_A SSRB; DNA binding prote 98.0 4E-06 1.4E-10 63.2 4.5 43 411-458 1-43 (61)
30 2o7g_A Probable RNA polymerase 98.0 9.1E-06 3.1E-10 68.3 6.5 57 318-375 13-70 (112)
31 1p4w_A RCSB; solution structur 98.0 9.8E-06 3.4E-10 68.4 6.2 47 407-458 33-79 (99)
32 1h3l_A RNA polymerase sigma fa 97.9 7.1E-06 2.4E-10 65.9 3.9 51 325-375 9-59 (87)
33 2q0o_A Probable transcriptiona 97.6 9E-05 3.1E-09 70.5 7.1 46 408-458 175-220 (236)
34 3ugo_A RNA polymerase sigma fa 97.6 2E-06 6.9E-11 83.7 -4.6 82 223-326 153-239 (245)
35 1l3l_A Transcriptional activat 97.6 9E-05 3.1E-09 70.4 6.9 45 408-457 173-217 (234)
36 2a6h_F RNA polymerase sigma fa 97.4 3.2E-05 1.1E-09 80.8 1.6 82 223-323 225-308 (423)
37 3szt_A QCSR, quorum-sensing co 97.4 0.00017 5.8E-09 69.0 6.4 46 407-457 174-219 (237)
38 1l9z_H Sigma factor SIGA; heli 97.4 5.2E-05 1.8E-09 79.7 3.0 80 223-324 240-324 (438)
39 3qp6_A CVIR transcriptional re 97.3 0.00026 8.8E-09 69.1 6.4 46 408-458 197-242 (265)
40 1tc3_C Protein (TC3 transposas 97.1 0.0007 2.4E-08 47.4 5.3 40 408-451 5-44 (51)
41 2w7n_A TRFB transcriptional re 96.9 0.0018 6.1E-08 55.1 7.1 46 408-457 18-63 (101)
42 1yio_A Response regulatory pro 96.7 0.0057 1.9E-07 55.3 8.8 50 403-457 137-186 (208)
43 2x48_A CAG38821; archeal virus 96.6 0.0012 4E-08 48.6 3.3 39 409-452 17-55 (55)
44 3iyd_F RNA polymerase sigma fa 96.6 2.7E-05 9.3E-10 84.9 -8.2 81 223-325 417-500 (613)
45 1a04_A Nitrate/nitrite respons 96.4 0.0065 2.2E-07 55.3 7.1 46 407-457 153-198 (215)
46 3c3w_A Two component transcrip 96.1 0.009 3.1E-07 55.3 6.5 46 407-457 148-193 (225)
47 1rp3_A RNA polymerase sigma fa 95.6 0.0046 1.6E-07 57.2 2.3 80 224-325 59-138 (239)
48 3p7n_A Sensor histidine kinase 95.5 0.041 1.4E-06 51.2 8.5 56 397-457 187-242 (258)
49 3klo_A Transcriptional regulat 95.4 0.014 4.9E-07 53.7 5.1 46 407-457 158-203 (225)
50 1jko_C HIN recombinase, DNA-in 94.0 0.027 9.1E-07 39.7 2.3 33 414-451 12-44 (52)
51 1p2f_A Response regulator; DRR 93.9 0.071 2.4E-06 48.5 5.8 50 408-458 145-197 (220)
52 2oqr_A Sensory transduction pr 93.7 0.074 2.5E-06 48.6 5.5 50 408-458 156-210 (230)
53 2gwr_A DNA-binding response re 93.7 0.11 3.6E-06 48.2 6.5 50 408-458 153-207 (238)
54 1qgp_A Protein (double strande 93.2 0.11 3.8E-06 41.4 5.1 41 411-451 14-54 (77)
55 3kor_A Possible Trp repressor; 92.5 0.12 4E-06 45.1 4.5 40 407-453 60-99 (119)
56 1qbj_A Protein (double-strande 92.5 0.21 7.1E-06 40.4 5.8 44 411-458 10-53 (81)
57 1kgs_A DRRD, DNA binding respo 92.5 0.099 3.4E-06 47.5 4.3 50 408-458 151-205 (225)
58 1ys7_A Transcriptional regulat 92.3 0.09 3.1E-06 48.0 3.8 50 408-458 159-213 (233)
59 1u78_A TC3 transposase, transp 92.1 0.19 6.4E-06 42.7 5.4 40 408-451 6-45 (141)
60 1pdn_C Protein (PRD paired); p 92.0 0.26 9E-06 40.7 6.1 42 408-453 17-58 (128)
61 1zx4_A P1 PARB, plasmid partit 91.6 0.17 5.7E-06 47.6 4.8 36 413-453 14-49 (192)
62 3q9s_A DNA-binding response re 91.4 0.17 5.9E-06 47.6 4.7 50 408-458 182-236 (249)
63 3r0j_A Possible two component 91.3 0.32 1.1E-05 45.3 6.6 50 408-458 176-230 (250)
64 1k78_A Paired box protein PAX5 90.5 0.43 1.5E-05 41.4 6.1 42 408-453 32-73 (149)
65 1l0o_C Sigma factor; bergerat 90.5 0.26 9E-06 45.1 4.9 80 224-323 72-151 (243)
66 2hqr_A Putative transcriptiona 90.3 0.086 2.9E-06 48.0 1.5 50 408-458 143-197 (223)
67 2d1h_A ST1889, 109AA long hypo 90.0 0.64 2.2E-05 37.2 6.4 44 406-451 16-59 (109)
68 2elh_A CG11849-PA, LD40883P; s 89.2 0.7 2.4E-05 37.0 5.9 27 427-453 37-63 (87)
69 2w48_A Sorbitol operon regulat 89.1 0.4 1.4E-05 47.4 5.3 37 414-454 11-47 (315)
70 3k2z_A LEXA repressor; winged 88.9 0.47 1.6E-05 43.6 5.3 42 408-449 2-45 (196)
71 2o3f_A Putative HTH-type trans 88.6 1.2 4.2E-05 37.6 7.3 51 399-451 9-62 (111)
72 2heo_A Z-DNA binding protein 1 88.6 0.54 1.8E-05 36.1 4.6 40 409-450 8-47 (67)
73 1oyi_A Double-stranded RNA-bin 88.4 0.35 1.2E-05 39.4 3.6 25 427-451 29-53 (82)
74 3nqo_A MARR-family transcripti 88.4 1.2 4E-05 40.3 7.6 54 398-452 28-81 (189)
75 2dbb_A Putative HTH-type trans 88.1 0.98 3.3E-05 39.3 6.7 42 407-451 5-46 (151)
76 1r1u_A CZRA, repressor protein 88.1 1.8 6E-05 35.6 7.9 48 400-451 14-62 (106)
77 2cfx_A HTH-type transcriptiona 88.0 0.89 3.1E-05 39.5 6.3 40 409-451 3-42 (144)
78 2glo_A Brinker CG9653-PA; prot 87.8 1 3.4E-05 33.4 5.6 46 410-460 7-56 (59)
79 1y0u_A Arsenical resistance op 87.7 2.6 8.8E-05 33.8 8.5 37 410-451 30-66 (96)
80 3bro_A Transcriptional regulat 87.7 2.3 7.8E-05 35.5 8.5 51 401-452 22-74 (141)
81 3ech_A MEXR, multidrug resista 87.6 1.4 4.8E-05 37.3 7.2 52 399-453 21-76 (142)
82 3r0a_A Putative transcriptiona 87.5 1.3 4.4E-05 37.8 6.8 46 404-451 19-65 (123)
83 3tgn_A ADC operon repressor AD 87.2 1.1 3.8E-05 37.9 6.3 41 408-452 35-75 (146)
84 2cyy_A Putative HTH-type trans 87.0 1.4 4.7E-05 38.5 6.9 41 408-451 4-44 (151)
85 2cg4_A Regulatory protein ASNC 86.8 1.4 4.7E-05 38.5 6.9 41 408-451 5-45 (152)
86 2jn6_A Protein CGL2762, transp 86.7 0.7 2.4E-05 37.4 4.5 40 409-452 6-47 (97)
87 2w25_A Probable transcriptiona 86.6 1.2 3.9E-05 38.9 6.2 41 408-451 4-44 (150)
88 2p5v_A Transcriptional regulat 86.6 1.1 3.9E-05 39.5 6.2 41 408-451 7-47 (162)
89 3eco_A MEPR; mutlidrug efflux 86.5 2.4 8.1E-05 35.5 8.0 53 399-452 17-71 (139)
90 2zkz_A Transcriptional repress 86.3 1.2 4.1E-05 36.3 5.8 38 410-451 26-64 (99)
91 1sfx_A Conserved hypothetical 86.2 1.1 3.8E-05 35.7 5.5 41 408-451 17-57 (109)
92 1i1g_A Transcriptional regulat 86.1 1.3 4.5E-05 37.8 6.2 40 409-451 2-41 (141)
93 3bpv_A Transcriptional regulat 86.0 2.4 8.1E-05 35.3 7.7 50 400-452 16-67 (138)
94 2x4h_A Hypothetical protein SS 86.0 1.2 4.2E-05 37.7 6.0 46 407-452 9-55 (139)
95 2gxg_A 146AA long hypothetical 85.9 2.5 8.4E-05 35.6 7.8 42 408-453 34-75 (146)
96 2pn6_A ST1022, 150AA long hypo 85.8 1.3 4.5E-05 38.4 6.1 40 409-451 1-40 (150)
97 3cuo_A Uncharacterized HTH-typ 85.8 1.4 4.7E-05 35.0 5.8 47 402-451 14-61 (99)
98 3bdd_A Regulatory protein MARR 85.8 2.3 7.9E-05 35.5 7.5 42 408-452 28-69 (142)
99 3pqk_A Biofilm growth-associat 85.6 2.4 8.4E-05 34.2 7.3 47 400-450 11-58 (102)
100 2k27_A Paired box protein PAX- 85.6 0.48 1.6E-05 41.7 3.2 40 408-451 25-64 (159)
101 3i4p_A Transcriptional regulat 85.6 1.3 4.6E-05 39.3 6.2 40 409-451 1-40 (162)
102 2fa5_A Transcriptional regulat 85.5 3.2 0.00011 35.7 8.5 45 407-454 45-89 (162)
103 2lkp_A Transcriptional regulat 85.0 1.7 5.6E-05 36.2 6.1 47 401-451 21-68 (119)
104 2nnn_A Probable transcriptiona 84.9 1.8 6.2E-05 36.1 6.4 42 408-452 35-76 (140)
105 3jth_A Transcription activator 84.7 2.7 9.3E-05 33.6 7.1 46 401-450 12-58 (98)
106 3iwf_A Transcription regulator 84.4 3 0.0001 35.0 7.5 63 398-462 4-73 (107)
107 4hbl_A Transcriptional regulat 84.4 3.1 0.0001 35.6 7.8 44 407-453 37-80 (149)
108 2e1c_A Putative HTH-type trans 84.2 1.7 5.7E-05 39.3 6.2 41 408-451 24-64 (171)
109 3cdh_A Transcriptional regulat 84.1 3.2 0.00011 35.5 7.8 43 408-453 40-82 (155)
110 2oqg_A Possible transcriptiona 83.9 2.4 8.4E-05 34.5 6.7 46 402-451 11-57 (114)
111 2qww_A Transcriptional regulat 83.8 3.1 0.00011 35.5 7.5 43 408-453 38-80 (154)
112 2l0k_A Stage III sporulation p 83.8 1.1 3.8E-05 37.1 4.4 38 411-452 7-44 (93)
113 1uxc_A FRUR (1-57), fructose r 83.7 0.9 3.1E-05 35.0 3.6 23 429-451 1-23 (65)
114 2rdp_A Putative transcriptiona 83.7 3.1 0.0001 35.2 7.4 50 401-453 30-81 (150)
115 1ku9_A Hypothetical protein MJ 83.5 3.2 0.00011 34.8 7.4 42 408-451 23-64 (152)
116 2ia0_A Putative HTH-type trans 83.5 1.9 6.4E-05 38.9 6.2 42 407-451 13-54 (171)
117 1jgs_A Multiple antibiotic res 83.5 3.5 0.00012 34.3 7.6 53 398-453 19-73 (138)
118 1r1t_A Transcriptional repress 82.9 3.3 0.00011 35.2 7.3 46 402-451 36-82 (122)
119 3cjn_A Transcriptional regulat 82.9 2.3 8E-05 36.6 6.5 43 408-453 49-91 (162)
120 1sfu_A 34L protein; protein/Z- 82.9 2 6.7E-05 34.4 5.3 42 397-452 12-53 (75)
121 3hsr_A HTH-type transcriptiona 82.9 2.4 8.4E-05 35.8 6.4 51 400-453 23-75 (140)
122 3frw_A Putative Trp repressor 82.8 2.2 7.5E-05 36.4 5.9 40 409-448 37-78 (107)
123 3fm5_A Transcriptional regulat 82.8 4.3 0.00015 34.5 8.0 52 399-452 25-78 (150)
124 1s3j_A YUSO protein; structura 82.6 2.4 8.1E-05 36.2 6.3 44 407-453 33-76 (155)
125 3f3x_A Transcriptional regulat 82.5 3.4 0.00012 34.9 7.2 43 408-454 34-76 (144)
126 3bj6_A Transcriptional regulat 82.4 3.8 0.00013 34.7 7.5 42 408-452 37-78 (152)
127 2qvo_A Uncharacterized protein 82.3 1.5 5.1E-05 35.3 4.6 45 408-452 9-54 (95)
128 2nyx_A Probable transcriptiona 82.2 2.6 9E-05 36.9 6.6 42 408-452 42-83 (168)
129 2kko_A Possible transcriptiona 82.2 1.6 5.6E-05 36.1 4.9 46 402-451 15-61 (108)
130 3oop_A LIN2960 protein; protei 82.0 2.7 9.1E-05 35.5 6.3 50 400-452 24-75 (143)
131 3qbm_A TETR transcriptional re 81.8 21 0.00071 30.5 12.3 78 287-364 11-89 (199)
132 3nrv_A Putative transcriptiona 81.7 2.6 8.8E-05 35.7 6.1 44 408-454 37-80 (148)
133 1zug_A Phage 434 CRO protein; 81.6 1.8 6.3E-05 31.9 4.6 25 427-451 15-39 (71)
134 1r69_A Repressor protein CI; g 81.5 1.9 6.5E-05 31.6 4.6 25 427-451 13-37 (69)
135 2fbh_A Transcriptional regulat 81.3 3.5 0.00012 34.5 6.8 50 401-452 25-76 (146)
136 3ppb_A Putative TETR family tr 81.3 13 0.00045 31.6 10.7 82 287-368 13-95 (195)
137 2xi8_A Putative transcription 81.1 1.8 6E-05 31.4 4.2 25 427-451 13-37 (66)
138 3kz3_A Repressor protein CI; f 81.1 11 0.00037 28.7 9.1 56 292-359 17-72 (80)
139 3qq6_A HTH-type transcriptiona 81.0 1.9 6.6E-05 33.4 4.6 25 427-451 22-46 (78)
140 1jhf_A LEXA repressor; LEXA SO 80.9 0.99 3.4E-05 41.3 3.4 44 408-451 3-49 (202)
141 2a6c_A Helix-turn-helix motif; 80.9 1.9 6.5E-05 33.7 4.6 25 427-451 30-54 (83)
142 2htj_A P fimbrial regulatory p 80.9 3.7 0.00013 32.0 6.3 25 427-451 13-37 (81)
143 3dcf_A Transcriptional regulat 80.8 14 0.00049 32.1 11.0 84 287-370 35-119 (218)
144 3kp7_A Transcriptional regulat 80.8 3.5 0.00012 35.1 6.7 42 408-453 35-76 (151)
145 1uly_A Hypothetical protein PH 80.8 2.6 9E-05 38.9 6.3 39 409-451 18-56 (192)
146 3k0l_A Repressor protein; heli 80.8 4.2 0.00014 35.2 7.3 50 400-452 33-84 (162)
147 1u2w_A CADC repressor, cadmium 80.7 3.6 0.00012 34.7 6.7 39 410-451 41-79 (122)
148 3g3z_A NMB1585, transcriptiona 80.7 4.7 0.00016 34.0 7.5 42 408-452 28-69 (145)
149 3s2w_A Transcriptional regulat 80.6 2.8 9.7E-05 36.1 6.1 52 399-453 36-89 (159)
150 2a61_A Transcriptional regulat 80.4 2.5 8.5E-05 35.5 5.6 43 408-453 30-72 (145)
151 1y7y_A C.AHDI; helix-turn-heli 80.3 2.2 7.4E-05 31.8 4.6 25 427-451 25-49 (74)
152 2pex_A Transcriptional regulat 79.9 2.5 8.4E-05 36.1 5.4 43 408-453 44-86 (153)
153 2b5a_A C.BCLI; helix-turn-heli 79.9 2.3 7.7E-05 32.0 4.6 25 427-451 22-46 (77)
154 3b7h_A Prophage LP1 protein 11 79.7 2.6 9E-05 31.7 5.0 25 427-451 19-43 (78)
155 2wiu_B HTH-type transcriptiona 79.7 2.7 9.3E-05 32.5 5.2 25 427-451 24-48 (88)
156 4b8x_A SCO5413, possible MARR- 79.5 3.9 0.00013 35.3 6.6 53 399-452 21-75 (147)
157 1lj9_A Transcriptional regulat 79.4 3.2 0.00011 34.8 5.9 51 400-453 16-68 (144)
158 1hlv_A CENP-B, major centromer 79.2 2.9 0.0001 35.2 5.6 45 408-456 7-53 (131)
159 2r1j_L Repressor protein C2; p 79.1 1.9 6.5E-05 31.4 3.9 25 427-451 17-41 (68)
160 3f6w_A XRE-family like protein 79.1 1.8 6.1E-05 33.3 3.9 25 427-451 26-50 (83)
161 2jt1_A PEFI protein; solution 78.7 1.4 4.8E-05 35.2 3.1 24 427-450 23-46 (77)
162 2k9q_A Uncharacterized protein 78.7 1.9 6.5E-05 32.9 3.9 25 427-451 14-38 (77)
163 3eus_A DNA-binding protein; st 78.7 2.3 7.7E-05 33.5 4.4 25 427-451 26-50 (86)
164 3bja_A Transcriptional regulat 78.5 2.3 7.8E-05 35.4 4.6 43 408-453 30-72 (139)
165 1q1h_A TFE, transcription fact 78.3 1.3 4.5E-05 36.4 3.0 44 409-458 16-59 (110)
166 3knw_A Putative transcriptiona 78.3 22 0.00076 30.8 11.4 84 286-369 17-101 (212)
167 1p6r_A Penicillinase repressor 78.3 2.6 8.8E-05 32.8 4.6 43 407-452 5-51 (82)
168 2fbi_A Probable transcriptiona 78.2 2.2 7.6E-05 35.6 4.5 43 408-453 33-75 (142)
169 3t76_A VANU, transcriptional r 78.1 2.6 8.8E-05 34.1 4.6 25 427-451 36-60 (88)
170 2eth_A Transcriptional regulat 78.0 2.6 8.9E-05 36.2 5.0 43 408-453 41-83 (154)
171 3s8q_A R-M controller protein; 77.9 2.7 9.4E-05 32.2 4.6 25 427-451 23-47 (82)
172 2p5k_A Arginine repressor; DNA 77.8 3.4 0.00012 30.3 4.9 25 426-450 17-46 (64)
173 2ef8_A C.ECOT38IS, putative tr 77.7 2.8 9.6E-05 32.0 4.6 25 427-451 22-46 (84)
174 3boq_A Transcriptional regulat 77.6 3 0.0001 35.8 5.3 44 408-453 44-87 (160)
175 2ewt_A BLDD, putative DNA-bind 77.5 3.3 0.00011 30.6 4.9 25 427-451 20-46 (71)
176 1adr_A P22 C2 repressor; trans 77.3 2.2 7.6E-05 31.9 3.9 25 427-451 17-41 (76)
177 1neq_A DNA-binding protein NER 77.2 1.5 5E-05 34.5 2.8 25 427-451 21-45 (74)
178 3qkx_A Uncharacterized HTH-typ 77.1 24 0.00082 29.8 11.0 78 286-363 11-89 (188)
179 3f1b_A TETR-like transcription 77.0 20 0.00068 30.7 10.6 82 287-368 18-100 (203)
180 3fmy_A HTH-type transcriptiona 77.0 2 6.9E-05 32.8 3.6 25 427-451 23-47 (73)
181 4ghj_A Probable transcriptiona 76.9 2.7 9.3E-05 34.9 4.6 25 427-451 48-72 (101)
182 2dk5_A DNA-directed RNA polyme 76.9 2 6.7E-05 35.3 3.6 45 407-452 16-60 (91)
183 2hr3_A Probable transcriptiona 76.6 2.6 8.9E-05 35.5 4.6 43 409-453 33-75 (147)
184 3bs3_A Putative DNA-binding pr 76.4 2.9 9.9E-05 31.3 4.3 25 427-451 22-46 (76)
185 1x57_A Endothelial differentia 76.4 3.8 0.00013 32.2 5.1 25 427-451 25-49 (91)
186 3hyi_A Protein DUF199/WHIA; la 76.3 7.5 0.00026 38.6 8.3 52 399-453 232-285 (295)
187 1ub9_A Hypothetical protein PH 76.2 2.6 8.9E-05 33.3 4.2 39 410-451 15-53 (100)
188 3u2r_A Regulatory protein MARR 76.2 3.2 0.00011 36.2 5.1 53 400-453 33-87 (168)
189 3kz3_A Repressor protein CI; f 76.1 2.3 7.7E-05 32.8 3.7 25 427-451 24-48 (80)
190 3pas_A TETR family transcripti 76.0 15 0.00052 31.2 9.5 82 287-368 12-94 (195)
191 2kpj_A SOS-response transcript 76.0 3 0.0001 33.2 4.5 25 427-451 21-45 (94)
192 3lsg_A Two-component response 75.9 15 0.00053 29.3 8.9 38 289-326 5-43 (103)
193 1okr_A MECI, methicillin resis 75.6 1.8 6.1E-05 35.9 3.1 45 406-453 5-53 (123)
194 3oou_A LIN2118 protein; protei 75.5 14 0.00049 29.9 8.7 39 288-326 7-45 (108)
195 3f0c_A TETR-molecule A, transc 75.4 40 0.0014 29.2 12.8 84 287-370 15-99 (216)
196 1on2_A Transcriptional regulat 75.3 2.1 7.2E-05 36.5 3.6 44 409-452 2-46 (142)
197 3jw4_A Transcriptional regulat 75.1 3.4 0.00012 35.1 4.9 44 408-452 38-81 (148)
198 4aik_A Transcriptional regulat 74.9 10 0.00035 32.8 8.1 52 399-452 17-70 (151)
199 2ppx_A AGR_C_3184P, uncharacte 74.8 3.3 0.00011 33.4 4.5 25 427-451 42-66 (99)
200 3o9x_A Uncharacterized HTH-typ 74.6 9.2 0.00031 32.3 7.5 25 427-451 83-107 (133)
201 3omt_A Uncharacterized protein 74.6 2.4 8.2E-05 31.9 3.4 25 427-451 20-44 (73)
202 2pij_A Prophage PFL 6 CRO; tra 74.5 4.1 0.00014 30.1 4.6 22 427-449 13-34 (67)
203 3kz9_A SMCR; transcriptional r 74.4 31 0.0011 29.4 11.2 83 287-369 21-104 (206)
204 3mzy_A RNA polymerase sigma-H 74.4 4.2 0.00014 34.5 5.3 30 298-327 120-149 (164)
205 3anp_C Transcriptional repress 74.4 39 0.0013 29.3 11.9 62 287-348 13-75 (204)
206 3g5g_A Regulatory protein; tra 74.3 3.6 0.00012 33.6 4.6 25 427-451 40-64 (99)
207 2jsc_A Transcriptional regulat 74.2 3.1 0.00011 34.9 4.3 37 411-451 21-57 (118)
208 3f6o_A Probable transcriptiona 74.1 2.4 8.1E-05 35.5 3.5 46 402-451 8-54 (118)
209 3bd1_A CRO protein; transcript 74.1 3.4 0.00012 31.7 4.2 24 427-451 11-34 (79)
210 2frh_A SARA, staphylococcal ac 74.0 5.6 0.00019 33.4 5.9 44 408-452 34-77 (127)
211 4fx0_A Probable transcriptiona 73.9 11 0.00037 32.6 7.9 53 400-452 20-76 (148)
212 2fbk_A Transcriptional regulat 73.9 3.8 0.00013 36.4 5.0 53 401-453 57-111 (181)
213 3oio_A Transcriptional regulat 73.8 11 0.00039 30.8 7.7 40 287-326 8-47 (113)
214 3mn2_A Probable ARAC family tr 73.8 22 0.00075 28.6 9.4 71 288-361 4-78 (108)
215 2pg4_A Uncharacterized protein 73.7 3.4 0.00012 33.0 4.3 27 427-453 29-56 (95)
216 2o38_A Hypothetical protein; a 73.4 3.7 0.00013 35.0 4.6 25 427-451 52-76 (120)
217 2k9s_A Arabinose operon regula 73.3 16 0.00056 29.4 8.5 39 288-326 5-44 (107)
218 3e6m_A MARR family transcripti 73.2 5.7 0.0002 34.3 6.0 43 408-453 50-92 (161)
219 3bqz_B HTH-type transcriptiona 72.9 28 0.00096 29.6 10.4 75 287-361 6-81 (194)
220 2bv6_A MGRA, HTH-type transcri 72.4 2.3 8E-05 35.7 3.1 43 408-453 34-76 (142)
221 1tbx_A ORF F-93, hypothetical 72.1 3.2 0.00011 33.2 3.7 43 408-453 5-51 (99)
222 2g7s_A Transcriptional regulat 71.9 23 0.0008 29.9 9.6 85 286-370 11-96 (194)
223 3mkl_A HTH-type transcriptiona 71.6 18 0.00061 29.9 8.5 70 288-360 9-79 (120)
224 3vk0_A NHTF, transcriptional r 71.6 3.7 0.00013 34.0 4.1 25 427-451 33-57 (114)
225 2hzt_A Putative HTH-type trans 71.5 3.6 0.00012 33.8 4.0 46 402-451 4-51 (107)
226 3bhq_A Transcriptional regulat 71.4 49 0.0017 28.9 11.9 60 287-346 16-76 (211)
227 2fu4_A Ferric uptake regulatio 71.4 6.7 0.00023 30.4 5.4 41 408-450 14-60 (83)
228 1z91_A Organic hydroperoxide r 71.3 3.4 0.00012 34.8 3.9 44 408-454 37-80 (147)
229 2wus_R RODZ, putative uncharac 71.2 4.8 0.00016 33.9 4.8 25 427-451 19-43 (112)
230 1gdt_A GD resolvase, protein ( 71.2 4 0.00014 36.7 4.6 31 415-450 150-180 (183)
231 1xmk_A Double-stranded RNA-spe 71.2 3.5 0.00012 33.1 3.7 25 427-451 24-49 (79)
232 3deu_A Transcriptional regulat 71.1 4.5 0.00016 35.5 4.9 52 400-453 40-93 (166)
233 2l8n_A Transcriptional repress 71.0 1.8 6.1E-05 33.5 1.9 23 428-450 9-31 (67)
234 1ic8_A Hepatocyte nuclear fact 70.5 64 0.0022 29.9 12.7 58 268-327 6-68 (194)
235 2o0m_A Transcriptional regulat 70.4 0.89 3E-05 45.5 0.0 42 409-454 18-60 (345)
236 2ao9_A Phage protein; structur 70.4 7.4 0.00025 35.1 6.1 45 407-451 22-71 (155)
237 3jsj_A Putative TETR-family tr 70.4 50 0.0017 28.1 11.8 82 287-368 13-94 (190)
238 2jt1_A PEFI protein; solution 70.3 5.2 0.00018 31.8 4.5 26 297-322 19-44 (77)
239 2ibd_A Possible transcriptiona 70.3 49 0.0017 28.7 11.6 75 287-361 18-93 (204)
240 3bru_A Regulatory protein, TET 70.0 41 0.0014 29.3 11.1 86 287-372 34-121 (222)
241 2rn7_A IS629 ORFA; helix, all 70.0 2.3 8E-05 34.8 2.5 25 429-453 31-55 (108)
242 2r0q_C Putative transposon TN5 70.0 3.8 0.00013 37.7 4.3 32 414-450 166-197 (209)
243 2wte_A CSA3; antiviral protein 69.8 8.6 0.0003 36.8 6.8 44 405-451 146-189 (244)
244 2f07_A YVDT; helix-turn-helix, 69.8 46 0.0016 28.9 11.3 73 287-359 14-87 (197)
245 3op9_A PLI0006 protein; struct 69.8 4.7 0.00016 33.0 4.4 25 427-451 21-45 (114)
246 1lmb_3 Protein (lambda repress 69.7 4.2 0.00014 31.8 3.9 25 427-451 29-53 (92)
247 3a03_A T-cell leukemia homeobo 69.6 9.1 0.00031 27.9 5.5 51 408-458 3-54 (56)
248 1b0n_A Protein (SINR protein); 69.6 5.4 0.00018 32.2 4.6 25 427-451 13-37 (111)
249 2fxa_A Protease production reg 69.6 9 0.00031 35.2 6.7 42 408-452 45-86 (207)
250 3mlf_A Transcriptional regulat 69.5 5.5 0.00019 33.1 4.8 25 427-451 35-59 (111)
251 3he0_A Transcriptional regulat 69.5 18 0.00062 30.9 8.4 81 287-367 15-96 (196)
252 2ict_A Antitoxin HIGA; helix-t 69.3 5.3 0.00018 31.5 4.5 25 427-451 20-44 (94)
253 2h09_A Transcriptional regulat 69.3 3.8 0.00013 35.4 3.9 25 427-451 53-77 (155)
254 2l49_A C protein; P2 bacteriop 69.3 4.7 0.00016 32.0 4.1 25 427-451 16-40 (99)
255 1z4h_A TORI, TOR inhibition pr 68.9 3.9 0.00013 31.0 3.4 26 427-452 9-34 (66)
256 3kxa_A NGO0477 protein, putati 68.8 5.1 0.00017 35.0 4.6 25 427-451 80-104 (141)
257 2qtq_A Transcriptional regulat 68.8 56 0.0019 28.0 11.5 83 287-369 20-104 (213)
258 1z7u_A Hypothetical protein EF 68.8 7.4 0.00025 32.2 5.4 46 402-451 12-59 (112)
259 1j5y_A Transcriptional regulat 68.7 7.2 0.00024 35.4 5.7 39 411-451 21-59 (187)
260 2hin_A GP39, repressor protein 68.6 4.1 0.00014 31.9 3.5 22 430-451 12-33 (71)
261 3nxc_A HTH-type protein SLMA; 68.5 13 0.00044 32.3 7.3 79 290-368 32-111 (212)
262 3dpj_A Transcription regulator 68.4 45 0.0015 28.4 10.8 81 287-367 12-93 (194)
263 2ecc_A Homeobox and leucine zi 68.2 7.6 0.00026 30.9 5.1 51 409-459 10-61 (76)
264 2hku_A A putative transcriptio 68.0 39 0.0013 29.6 10.5 73 287-359 24-96 (215)
265 2vn2_A DNAD, chromosome replic 67.9 6.6 0.00023 33.6 5.1 46 408-453 29-76 (128)
266 2b0l_A GTP-sensing transcripti 67.9 4 0.00014 33.9 3.5 29 426-458 40-69 (102)
267 3ivp_A Putative transposon-rel 67.8 7 0.00024 32.6 5.2 25 427-451 24-48 (126)
268 3s5r_A Transcriptional regulat 67.7 36 0.0012 29.4 10.1 82 287-368 14-97 (216)
269 1sgm_A Putative HTH-type trans 67.5 26 0.00087 29.7 8.9 81 287-367 10-92 (191)
270 3g7r_A Putative transcriptiona 67.5 47 0.0016 29.4 11.0 84 287-370 39-123 (221)
271 3rd3_A Probable transcriptiona 67.5 27 0.00092 29.7 9.1 86 287-372 14-101 (197)
272 2da4_A Hypothetical protein DK 67.3 12 0.0004 29.3 6.1 48 409-460 15-71 (80)
273 2da1_A Alpha-fetoprotein enhan 67.1 9.9 0.00034 28.8 5.4 51 409-459 14-65 (70)
274 2auw_A Hypothetical protein NE 67.1 5.5 0.00019 36.5 4.6 33 415-451 94-126 (170)
275 3mvp_A TETR/ACRR transcription 67.1 40 0.0014 29.1 10.3 73 286-358 29-102 (217)
276 3trb_A Virulence-associated pr 67.1 8.4 0.00029 31.8 5.4 25 427-451 26-50 (104)
277 2g9w_A Conserved hypothetical 67.0 7.4 0.00025 33.3 5.2 46 406-453 4-53 (138)
278 1g2h_A Transcriptional regulat 67.0 5.7 0.00019 29.7 3.9 38 409-450 18-55 (61)
279 2v79_A DNA replication protein 66.6 7.2 0.00025 34.0 5.1 48 408-455 29-78 (135)
280 3lhq_A Acrab operon repressor 66.4 54 0.0018 28.1 10.9 82 286-367 17-100 (220)
281 3qwg_A ESX-1 secretion-associa 65.9 4.3 0.00015 34.8 3.5 26 425-450 21-51 (123)
282 2cw1_A SN4M; lambda CRO fold, 65.8 4.2 0.00015 31.3 3.0 24 427-450 12-35 (65)
283 2y75_A HTH-type transcriptiona 65.6 7 0.00024 33.0 4.7 25 426-450 24-48 (129)
284 3f52_A CLP gene regulator (CLG 64.8 5.2 0.00018 33.0 3.7 25 427-451 40-64 (117)
285 2qwt_A Transcriptional regulat 64.8 53 0.0018 28.4 10.6 57 287-343 17-73 (196)
286 1xn7_A Hypothetical protein YH 64.7 12 0.00041 29.7 5.6 26 427-452 15-40 (78)
287 3ryp_A Catabolite gene activat 64.7 24 0.00083 30.9 8.4 27 428-458 167-193 (210)
288 1sd4_A Penicillinase repressor 64.5 7.3 0.00025 32.2 4.6 44 407-453 6-53 (126)
289 1bl0_A Protein (multiple antib 64.0 19 0.00065 30.2 7.2 40 287-326 12-51 (129)
290 2gen_A Probable transcriptiona 64.0 47 0.0016 28.8 10.1 59 287-345 11-70 (197)
291 3cec_A Putative antidote prote 63.9 6.2 0.00021 31.8 3.9 25 427-451 30-54 (104)
292 3f6v_A Possible transcriptiona 63.8 4.8 0.00017 35.6 3.5 37 411-451 58-94 (151)
293 1yz8_P Pituitary homeobox 2; D 63.7 20 0.0007 27.0 6.6 53 409-461 10-63 (68)
294 2jvl_A TRMBF1; coactivator, he 63.7 6.5 0.00022 32.4 4.0 25 427-451 48-72 (107)
295 1vi0_A Transcriptional regulat 63.7 45 0.0015 29.2 10.0 73 287-359 12-85 (206)
296 3tqn_A Transcriptional regulat 63.5 6.4 0.00022 32.8 4.0 29 426-458 30-59 (113)
297 3mnl_A KSTR, transcriptional r 63.5 23 0.00078 30.4 7.8 81 287-367 24-105 (203)
298 3fym_A Putative uncharacterize 63.4 7.9 0.00027 33.1 4.7 26 427-452 15-40 (130)
299 1rzs_A Antirepressor, regulato 63.3 4 0.00014 30.4 2.4 21 429-449 11-31 (61)
300 1ahd_P Antennapedia protein mu 63.2 25 0.00084 26.6 7.0 54 409-462 9-63 (68)
301 3on4_A Transcriptional regulat 63.1 49 0.0017 27.8 9.9 75 287-361 14-90 (191)
302 4ham_A LMO2241 protein; struct 63.0 6.4 0.00022 33.7 4.0 29 426-458 35-64 (134)
303 2dmq_A LIM/homeobox protein LH 62.9 13 0.00045 28.9 5.6 54 409-462 14-68 (80)
304 3mky_B Protein SOPB; partition 62.7 12 0.0004 35.0 5.9 49 403-452 18-66 (189)
305 2eby_A Putative HTH-type trans 62.6 6.7 0.00023 32.1 3.9 25 427-451 23-47 (113)
306 3lfp_A CSP231I C protein; tran 62.3 7.9 0.00027 30.9 4.2 25 427-451 13-41 (98)
307 1pb6_A Hypothetical transcript 62.2 75 0.0026 27.2 11.2 60 287-346 22-82 (212)
308 2bnm_A Epoxidase; oxidoreducta 62.1 7.9 0.00027 34.7 4.6 25 427-451 22-46 (198)
309 3k2a_A Homeobox protein MEIS2; 62.1 8.2 0.00028 29.5 4.1 55 408-462 4-62 (67)
310 2v57_A TETR family transcripti 62.0 49 0.0017 28.1 9.7 70 287-357 18-87 (190)
311 1rr7_A Middle operon regulator 61.9 14 0.00049 32.0 6.1 39 411-455 81-119 (129)
312 1puf_B PRE-B-cell leukemia tra 61.8 14 0.00049 28.2 5.5 57 408-464 7-67 (73)
313 1j1v_A Chromosomal replication 61.7 22 0.00074 29.1 6.8 29 427-455 45-74 (94)
314 3eup_A Transcriptional regulat 61.5 42 0.0014 28.6 9.2 82 287-368 15-97 (204)
315 2hyt_A TETR-family transcripti 61.5 59 0.002 28.1 10.3 60 287-346 16-76 (197)
316 2kfs_A Conserved hypothetical 61.5 4.2 0.00014 36.6 2.6 25 427-451 30-54 (148)
317 1fx7_A Iron-dependent represso 61.4 3.8 0.00013 38.4 2.4 43 408-451 3-47 (230)
318 3q0w_A HTH-type transcriptiona 61.4 49 0.0017 29.6 10.0 82 287-368 48-132 (236)
319 3oou_A LIN2118 protein; protei 61.2 14 0.00047 30.0 5.6 26 427-452 20-45 (108)
320 3bni_A Putative TETR-family tr 61.2 89 0.0031 27.7 14.1 85 286-370 46-133 (229)
321 1jgg_A Segmentation protein EV 61.1 15 0.00051 27.0 5.3 50 409-458 8-58 (60)
322 1ig7_A Homeotic protein MSX-1; 61.0 14 0.00049 26.8 5.1 50 409-458 7-57 (58)
323 1y9q_A Transcriptional regulat 60.9 8.3 0.00028 34.5 4.6 25 427-451 23-47 (192)
324 3hrs_A Metalloregulator SCAR; 60.9 12 0.00041 34.7 5.8 27 425-451 17-43 (214)
325 3by6_A Predicted transcription 60.8 7.5 0.00026 33.2 4.0 29 426-458 32-61 (126)
326 3aqt_A Bacterial regulatory pr 60.7 25 0.00084 32.0 7.9 61 287-347 50-111 (245)
327 3iwz_A CAP-like, catabolite ac 60.7 36 0.0012 30.2 8.9 49 406-458 155-213 (230)
328 1r71_A Transcriptional repress 60.6 9.7 0.00033 34.9 5.0 41 408-451 35-75 (178)
329 1rkt_A Protein YFIR; transcrip 60.5 62 0.0021 28.0 10.3 73 287-359 16-89 (205)
330 2oz6_A Virulence factor regula 60.4 32 0.0011 30.1 8.3 27 428-458 164-190 (207)
331 3dv8_A Transcriptional regulat 60.1 20 0.00067 31.8 6.9 27 428-458 169-195 (220)
332 2zcw_A TTHA1359, transcription 60.1 33 0.0011 30.1 8.4 46 405-450 113-168 (202)
333 1ui5_A A-factor receptor homol 60.0 75 0.0026 28.0 10.9 64 287-350 13-77 (215)
334 2ras_A Transcriptional regulat 60.0 45 0.0015 29.0 9.2 75 287-361 15-90 (212)
335 1x2n_A Homeobox protein pknox1 59.9 33 0.0011 26.1 7.3 54 409-462 14-71 (73)
336 3neu_A LIN1836 protein; struct 59.8 11 0.00036 32.1 4.8 29 426-458 34-63 (125)
337 3lsg_A Two-component response 59.7 18 0.00061 28.9 6.0 25 428-452 19-43 (103)
338 3him_A Probable transcriptiona 59.7 26 0.00089 30.1 7.5 80 287-366 20-100 (211)
339 3e7l_A Transcriptional regulat 59.6 11 0.00037 28.2 4.3 36 412-450 19-54 (63)
340 3bdn_A Lambda repressor; repre 59.2 6.2 0.00021 36.4 3.5 25 427-451 29-53 (236)
341 3col_A Putative transcription 58.9 36 0.0012 28.8 8.2 81 287-367 14-97 (196)
342 3ni7_A Bacterial regulatory pr 58.9 41 0.0014 30.2 8.9 52 287-338 11-63 (213)
343 3r1f_A ESX-1 secretion-associa 58.8 7 0.00024 34.0 3.5 25 426-450 24-53 (135)
344 1y6u_A XIS, excisionase from t 58.7 5.5 0.00019 31.1 2.5 25 427-451 15-39 (70)
345 3mn2_A Probable ARAC family tr 58.6 19 0.00065 29.0 6.0 26 427-452 17-42 (108)
346 1j9i_A GPNU1 DBD;, terminase s 58.5 4.6 0.00016 30.6 2.0 25 429-453 3-27 (68)
347 1b72_B Protein (PBX1); homeodo 58.5 16 0.00053 29.0 5.3 56 408-463 7-66 (87)
348 2dmn_A Homeobox protein TGIF2L 58.3 21 0.00071 28.3 6.0 55 409-463 14-72 (83)
349 2h8r_A Hepatocyte nuclear fact 58.2 12 0.00042 35.6 5.3 25 427-451 43-67 (221)
350 3b73_A PHIH1 repressor-like pr 58.2 8.4 0.00029 32.7 3.8 40 409-451 11-52 (111)
351 2dmu_A Homeobox protein goosec 58.2 16 0.00054 27.7 5.1 52 409-460 14-66 (70)
352 3uj3_X DNA-invertase; helix-tu 58.0 2.1 7.2E-05 38.9 0.0 36 412-452 147-182 (193)
353 2hdd_A Protein (engrailed home 57.8 15 0.0005 27.1 4.7 49 409-457 10-59 (61)
354 3b02_A Transcriptional regulat 57.6 37 0.0013 29.6 8.3 50 405-458 106-165 (195)
355 2hwv_A DNA-binding response re 57.6 28 0.00096 29.3 7.1 49 408-457 43-96 (121)
356 2gau_A Transcriptional regulat 57.5 31 0.0011 30.8 7.9 28 427-458 179-206 (232)
357 2k02_A Ferrous iron transport 57.4 11 0.00037 30.8 4.2 25 427-451 15-39 (87)
358 1nk2_P Homeobox protein VND; h 57.3 16 0.00053 28.4 5.0 55 409-463 16-71 (77)
359 2cue_A Paired box protein PAX6 57.1 19 0.00067 28.1 5.6 52 409-460 14-66 (80)
360 2h1k_A IPF-1, pancreatic and d 57.0 20 0.00069 26.6 5.4 51 409-459 10-61 (63)
361 3ccy_A Putative TETR-family tr 56.7 34 0.0012 29.7 7.8 74 287-360 18-92 (203)
362 2e1o_A Homeobox protein PRH; D 56.6 19 0.00066 27.3 5.4 52 409-460 14-66 (70)
363 1ft9_A Carbon monoxide oxidati 56.6 30 0.001 30.9 7.6 27 428-458 163-189 (222)
364 1zq3_P PRD-4, homeotic bicoid 56.4 25 0.00086 26.5 6.0 53 409-461 9-62 (68)
365 2q24_A Putative TETR family tr 56.3 50 0.0017 28.3 8.8 57 287-343 19-75 (194)
366 2k4j_A Putative transcriptiona 56.3 22 0.00074 29.7 6.1 50 408-458 41-95 (115)
367 1k61_A Mating-type protein alp 56.1 20 0.00067 26.3 5.2 51 408-458 4-58 (60)
368 3nau_A Zinc fingers and homeob 55.8 20 0.00067 27.9 5.2 49 411-459 13-62 (66)
369 3g1o_A Transcriptional regulat 55.7 58 0.002 29.5 9.6 83 287-369 47-132 (255)
370 2f2e_A PA1607; transcription f 55.7 15 0.00051 31.9 5.2 25 427-451 36-60 (146)
371 2qq9_A Diphtheria toxin repres 55.6 5.6 0.00019 37.2 2.5 44 408-451 3-47 (226)
372 4ev0_A Transcription regulator 55.4 18 0.00062 31.9 5.8 28 427-458 162-189 (216)
373 3a02_A Homeobox protein arista 55.4 14 0.00048 27.1 4.3 50 409-458 6-56 (60)
374 3c07_A Putative TETR-family tr 55.3 61 0.0021 30.2 9.8 57 286-342 44-101 (273)
375 1b72_A Protein (homeobox prote 54.8 24 0.00084 28.6 6.0 54 408-461 40-94 (97)
376 3e6c_C CPRK, cyclic nucleotide 54.8 42 0.0014 30.6 8.4 28 427-458 176-203 (250)
377 2k40_A Homeobox expressed in E 54.8 23 0.00078 26.6 5.5 52 409-460 8-60 (67)
378 1ic8_A Hepatocyte nuclear fact 54.5 22 0.00077 33.0 6.4 24 427-450 42-65 (194)
379 4a0z_A Transcription factor FA 54.4 15 0.0005 33.9 5.1 37 411-450 12-48 (190)
380 2fsw_A PG_0823 protein; alpha- 54.4 7.7 0.00026 31.7 2.9 45 403-451 16-62 (107)
381 1akh_A Protein (mating-type pr 54.4 14 0.00048 27.1 4.1 48 408-455 11-59 (61)
382 3rkx_A Biotin-[acetyl-COA-carb 54.4 12 0.0004 37.3 4.7 44 411-459 3-46 (323)
383 2zb9_A Putative transcriptiona 54.3 90 0.0031 27.0 10.3 56 286-341 26-82 (214)
384 1mkm_A ICLR transcriptional re 54.2 12 0.00042 35.2 4.7 26 426-451 21-46 (249)
385 2p5t_A Putative transcriptiona 54.1 2.7 9.1E-05 37.0 0.0 25 427-451 13-37 (158)
386 1v4r_A Transcriptional repress 54.0 4.2 0.00014 33.1 1.2 23 426-448 32-55 (102)
387 3plo_X DNA-invertase; resolvas 54.0 2.7 9.2E-05 38.3 0.0 38 413-455 148-185 (193)
388 2rek_A Putative TETR-family tr 54.0 68 0.0023 27.5 9.3 58 287-344 20-77 (199)
389 1p4x_A Staphylococcal accessor 53.9 18 0.0006 34.6 5.8 45 408-453 155-199 (250)
390 1hw1_A FADR, fatty acid metabo 53.9 13 0.00045 34.3 4.7 29 426-458 28-57 (239)
391 1fjl_A Paired protein; DNA-bin 53.8 22 0.00076 27.7 5.4 52 409-460 25-77 (81)
392 3d0s_A Transcriptional regulat 53.6 42 0.0014 29.9 8.1 24 427-450 176-199 (227)
393 2l1p_A DNA-binding protein SAT 53.5 8.1 0.00028 31.4 2.7 25 427-451 31-55 (83)
394 2xrn_A HTH-type transcriptiona 53.4 12 0.00039 35.3 4.3 27 425-451 18-44 (241)
395 2qlz_A Transcription factor PF 53.0 22 0.00076 33.8 6.3 25 427-451 177-201 (232)
396 2p8t_A Hypothetical protein PH 53.0 15 0.00051 34.5 4.9 45 408-458 12-56 (200)
397 3rkq_A Homeobox protein NKX-2. 52.9 20 0.00068 25.8 4.7 48 409-456 9-57 (58)
398 3kcc_A Catabolite gene activat 52.8 41 0.0014 31.1 8.1 27 428-458 217-243 (260)
399 3sxy_A Transcriptional regulat 52.8 11 0.00038 34.5 4.0 30 425-458 32-61 (218)
400 2ek5_A Predicted transcription 52.7 12 0.00042 32.1 4.0 29 426-458 25-54 (129)
401 1ftt_A TTF-1 HD, thyroid trans 52.4 23 0.00077 26.8 5.1 53 409-461 9-62 (68)
402 2ofy_A Putative XRE-family tra 52.3 68 0.0023 24.3 8.1 47 304-360 29-76 (86)
403 2dms_A Homeobox protein OTX2; 52.3 17 0.00058 28.4 4.5 54 409-462 14-68 (80)
404 1ylf_A RRF2 family protein; st 52.3 16 0.00055 31.8 4.8 43 409-451 9-53 (149)
405 3c7j_A Transcriptional regulat 52.2 14 0.00048 34.6 4.7 30 425-458 46-75 (237)
406 2g7u_A Transcriptional regulat 52.1 18 0.00063 34.2 5.6 33 419-451 20-52 (257)
407 3e7q_A Transcriptional regulat 52.0 1.1E+02 0.0038 26.0 10.9 77 287-363 18-96 (215)
408 2ovg_A Phage lambda CRO; trans 51.9 12 0.00041 28.7 3.4 21 430-450 15-35 (66)
409 3oio_A Transcriptional regulat 51.8 18 0.0006 29.6 4.7 26 427-452 22-47 (113)
410 2yu3_A DNA-directed RNA polyme 50.8 21 0.00073 29.5 5.0 44 407-451 33-76 (95)
411 2xdn_A HTH-type transcriptiona 50.7 1E+02 0.0034 26.7 10.0 58 287-344 15-73 (210)
412 3k2z_A LEXA repressor; winged 50.5 28 0.00096 31.5 6.4 32 292-323 14-45 (196)
413 1ntc_A Protein (nitrogen regul 50.5 10 0.00035 30.4 3.0 37 412-451 51-87 (91)
414 2p4w_A Transcriptional regulat 50.4 17 0.00059 33.6 4.9 43 405-451 8-51 (202)
415 3rjp_A COVR; winged helix-turn 50.3 39 0.0013 26.7 6.5 49 408-457 22-75 (96)
416 3rqi_A Response regulator prot 50.3 8.5 0.00029 33.7 2.7 39 409-450 140-178 (184)
417 3dn7_A Cyclic nucleotide bindi 50.2 7.8 0.00027 33.9 2.4 25 427-451 167-191 (194)
418 3fx3_A Cyclic nucleotide-bindi 50.2 36 0.0012 30.5 7.1 24 428-451 178-201 (237)
419 2k9s_A Arabinose operon regula 49.9 38 0.0013 27.2 6.5 26 427-452 19-44 (107)
420 1vz0_A PARB, chromosome partit 49.6 21 0.00071 33.7 5.5 53 407-462 116-170 (230)
421 2ofy_A Putative XRE-family tra 49.6 18 0.00063 27.6 4.3 22 430-451 29-50 (86)
422 1uhs_A HOP, homeodomain only p 49.6 28 0.00097 26.5 5.3 53 409-461 8-62 (72)
423 1u78_A TC3 transposase, transp 49.5 22 0.00074 29.6 5.0 26 427-452 76-103 (141)
424 3e97_A Transcriptional regulat 49.5 13 0.00045 33.4 3.9 28 427-458 174-201 (231)
425 1yyv_A Putative transcriptiona 49.5 17 0.00057 31.2 4.4 25 427-451 47-72 (131)
426 3la7_A Global nitrogen regulat 49.4 56 0.0019 29.7 8.3 28 427-458 192-219 (243)
427 1bia_A BIRA bifunctional prote 49.2 23 0.00078 34.9 5.9 38 410-450 4-41 (321)
428 2vz4_A Tipal, HTH-type transcr 49.1 10 0.00035 31.4 2.8 26 428-453 1-26 (108)
429 3lwf_A LIN1550 protein, putati 49.1 25 0.00084 31.4 5.6 44 408-451 21-67 (159)
430 2z99_A Putative uncharacterize 48.6 36 0.0012 32.3 6.9 102 298-442 26-128 (219)
431 2o0y_A Transcriptional regulat 48.6 19 0.00063 34.3 5.0 26 426-451 36-61 (260)
432 3gzi_A Transcriptional regulat 48.3 1.3E+02 0.0043 25.9 10.2 63 286-348 20-83 (218)
433 3b81_A Transcriptional regulat 48.3 93 0.0032 26.4 9.2 73 287-359 15-88 (203)
434 2fmy_A COOA, carbon monoxide o 48.2 14 0.00047 33.1 3.8 28 427-458 166-193 (220)
435 1puf_A HOX-1.7, homeobox prote 48.1 30 0.001 26.7 5.3 53 409-461 20-73 (77)
436 2da2_A Alpha-fetoprotein enhan 47.9 12 0.00042 28.3 2.9 50 409-458 14-64 (70)
437 2pmu_A Response regulator PHOP 47.8 29 0.00099 28.4 5.5 49 408-457 34-87 (110)
438 3npi_A TETR family regulatory 47.7 34 0.0012 31.0 6.5 74 287-360 22-96 (251)
439 1umq_A Photosynthetic apparatu 47.7 16 0.00053 29.3 3.6 23 428-450 54-76 (81)
440 2lk2_A Homeobox protein TGIF1; 47.6 34 0.0011 28.0 5.6 54 408-461 11-68 (89)
441 3dew_A Transcriptional regulat 47.6 45 0.0015 28.3 7.0 53 287-339 12-65 (206)
442 2hi3_A Homeodomain-only protei 47.4 37 0.0013 25.9 5.7 53 409-461 9-63 (73)
443 1gxq_A PHOB, phosphate regulon 47.4 33 0.0011 27.7 5.8 49 408-457 31-84 (106)
444 1b0n_A Protein (SINR protein); 47.0 70 0.0024 25.3 7.6 47 303-359 15-62 (111)
445 2di3_A Bacterial regulatory pr 46.9 21 0.00072 33.1 5.0 30 425-458 24-54 (239)
446 3t8r_A Staphylococcus aureus C 46.8 23 0.00078 30.8 4.9 43 409-451 6-51 (143)
447 1b8i_A Ultrabithorax, protein 46.7 21 0.00072 28.0 4.2 52 408-459 26-78 (81)
448 2ia2_A Putative transcriptiona 46.5 19 0.00063 34.4 4.6 34 418-451 26-59 (265)
449 1zk8_A Transcriptional regulat 46.5 87 0.003 26.3 8.7 75 287-362 12-87 (183)
450 2da3_A Alpha-fetoprotein enhan 46.4 16 0.00056 28.3 3.5 29 431-459 47-75 (80)
451 3iuo_A ATP-dependent DNA helic 46.2 31 0.0011 29.3 5.5 27 427-453 31-57 (122)
452 3f6w_A XRE-family like protein 46.2 90 0.0031 23.3 8.3 48 303-360 28-75 (83)
453 3vp5_A Transcriptional regulat 46.2 1.1E+02 0.0037 26.3 9.4 63 287-349 16-79 (189)
454 1y7y_A C.AHDI; helix-turn-heli 45.8 82 0.0028 22.7 7.8 25 303-327 27-51 (74)
455 3pvv_A Chromosomal replication 45.6 57 0.0019 27.0 6.9 31 427-457 49-79 (101)
456 2dn0_A Zinc fingers and homeob 45.6 24 0.00084 27.2 4.4 51 409-459 15-66 (76)
457 3lsj_A DEST; transcriptional r 45.5 24 0.00081 31.0 4.9 80 287-366 15-96 (220)
458 1opc_A OMPR, OMPRC; transcript 45.5 20 0.00069 29.2 4.1 49 408-457 31-84 (110)
459 1hkq_A REPA, replication prote 45.4 51 0.0017 28.2 6.8 60 400-459 10-78 (132)
460 2hs5_A Putative transcriptiona 45.3 17 0.00057 34.1 4.0 30 425-458 48-77 (239)
461 3rh2_A Hypothetical TETR-like 45.3 77 0.0026 27.4 8.3 57 287-343 7-64 (212)
462 2dmt_A Homeobox protein BARH-l 45.2 25 0.00086 27.4 4.4 50 409-458 24-74 (80)
463 3vib_A MTRR; helix-turn-helix 45.1 76 0.0026 27.5 8.2 54 287-340 14-68 (210)
464 3mkl_A HTH-type transcriptiona 45.1 26 0.00089 28.9 4.8 25 427-451 22-46 (120)
465 1z6r_A MLC protein; transcript 45.0 31 0.0011 34.6 6.2 39 413-454 18-56 (406)
466 3ivp_A Putative transposon-rel 44.8 61 0.0021 26.7 7.1 79 303-419 26-104 (126)
467 2iai_A Putative transcriptiona 44.7 35 0.0012 30.5 6.0 55 288-342 35-90 (230)
468 2m0c_A Homeobox protein arista 44.7 28 0.00097 26.4 4.6 51 409-459 16-67 (75)
469 3ihu_A Transcriptional regulat 44.6 18 0.00061 33.2 4.0 30 425-458 36-65 (222)
470 1t6s_A Conserved hypothetical 44.5 28 0.00096 31.5 5.2 26 299-324 19-46 (162)
471 2w53_A Repressor, SMet; antibi 44.5 1.3E+02 0.0045 26.1 9.8 61 287-347 15-76 (219)
472 3dkw_A DNR protein; CRP-FNR, H 44.4 17 0.00058 32.4 3.8 28 427-458 177-204 (227)
473 1stz_A Heat-inducible transcri 44.2 26 0.00087 35.1 5.4 42 409-450 15-60 (338)
474 2o7t_A Transcriptional regulat 44.2 1.1E+02 0.0039 26.0 9.2 59 287-345 12-71 (199)
475 2dg8_A Putative TETR-family tr 44.1 1.3E+02 0.0043 25.7 9.4 73 287-359 13-86 (193)
476 2nx4_A Transcriptional regulat 44.0 1.5E+02 0.0052 25.3 10.8 57 287-343 14-71 (194)
477 3hot_A Transposable element ma 43.8 23 0.0008 34.2 5.0 36 413-452 11-53 (345)
478 1zyb_A Transcription regulator 43.7 17 0.00058 32.9 3.7 27 428-458 186-212 (232)
479 1lmb_3 Protein (lambda repress 43.4 1.1E+02 0.0037 23.4 9.7 59 290-360 20-78 (92)
480 2wv0_A YVOA, HTH-type transcri 43.2 24 0.00082 33.2 4.8 29 426-458 31-60 (243)
481 2dmp_A Zinc fingers and homeob 43.1 31 0.001 27.7 4.7 51 409-459 20-71 (89)
482 2ly9_A Zinc fingers and homeob 43.1 22 0.00075 27.2 3.7 53 409-461 13-66 (74)
483 2r5y_A Homeotic protein sex co 42.9 33 0.0011 27.2 4.9 51 408-458 34-85 (88)
484 3edp_A LIN2111 protein; APC883 42.8 23 0.00078 33.3 4.6 29 426-458 30-59 (236)
485 3r4k_A Transcriptional regulat 42.8 16 0.00055 34.8 3.5 38 414-451 7-44 (260)
486 2zcm_A Biofilm operon icaabcd 42.3 84 0.0029 26.7 7.9 55 287-341 11-66 (192)
487 1u8b_A ADA polyprotein; protei 42.3 49 0.0017 27.7 6.2 26 427-452 92-117 (133)
488 2k9q_A Uncharacterized protein 42.3 1E+02 0.0035 22.8 7.9 49 303-361 16-64 (77)
489 2fjr_A Repressor protein CI; g 42.2 23 0.00078 31.3 4.3 22 430-451 22-43 (189)
490 3bwg_A Uncharacterized HTH-typ 42.2 24 0.00082 33.1 4.6 29 426-458 26-55 (239)
491 1mnm_C Protein (MAT alpha-2 tr 42.0 31 0.0011 27.3 4.6 50 408-457 33-86 (87)
492 3df8_A Possible HXLR family tr 41.9 24 0.00082 29.1 4.1 25 427-451 39-66 (111)
493 2da5_A Zinc fingers and homeob 41.9 29 0.00098 26.8 4.3 51 409-459 14-65 (75)
494 1bl0_A Protein (multiple antib 41.6 26 0.00089 29.3 4.3 26 427-452 26-51 (129)
495 2jrt_A Uncharacterized protein 41.5 45 0.0015 27.4 5.6 26 427-452 48-73 (95)
496 2cra_A Homeobox protein HOX-B1 41.4 21 0.00073 27.0 3.4 50 409-458 14-64 (70)
497 3gbg_A TCP pilus virulence reg 41.4 1E+02 0.0034 28.6 8.9 38 288-325 171-208 (276)
498 3on2_A Probable transcriptiona 41.3 42 0.0014 28.4 5.7 76 287-362 16-93 (199)
499 2k4b_A Transcriptional regulat 41.2 7.4 0.00025 32.2 0.7 48 403-453 27-78 (99)
500 3mq0_A Transcriptional repress 41.2 14 0.00049 35.5 2.9 26 426-451 43-68 (275)
No 1
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=99.97 E-value=2e-31 Score=280.09 Aligned_cols=217 Identities=32% Similarity=0.548 Sum_probs=181.1
Q ss_pred ChhHHhhhcccCccCCCChHHHHHHHHHHHHHHHHHHH------------------HHHHHHHhCCCCCHHHHHH-----
Q 011992 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKE------------------KSKLQSQFGREPTLIEWAK----- 310 (473)
Q Consensus 254 ~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~kle~a------------------~~~L~~~lGRePT~eEiA~----- 310 (473)
.++++.|++.++++|+||+|||++|+++++....+... +......+|+.|+..||+.
T Consensus 93 ~d~~~~Yl~ei~~~pLLt~eEE~~La~~i~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (438)
T 1l9z_H 93 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 172 (438)
T ss_pred CChHHHHHHHhccCCCCCHHHHHHHHHHHHHhhhHHHHHHhhhccchhhhhhhhhhhhhhcccccccccccccccchhhh
Confidence 35799999999999999999999999999986433221 1122234567888777632
Q ss_pred -------HcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc
Q 011992 311 -------AIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN 383 (473)
Q Consensus 311 -------~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT 383 (473)
.++++..+|...+.+|..|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++||+.+|++|+|
T Consensus 173 ~~~~~~~~~~~~~~eLi~~~~~d~~A~~~Li~~nlrlVv~iA~ry~~~g~~aeDLIQEg~IgL~kAvekFDp~kG~rFsT 252 (438)
T 1l9z_H 173 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 252 (438)
T ss_pred hhhhhhhcccchHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCChHH
Confidence 2456778888888888899999999999999999999999999999999999999999999999999999987
Q ss_pred CCC-----------------------------------------------------------------------------
Q 011992 384 TGV----------------------------------------------------------------------------- 386 (473)
Q Consensus 384 ~~~----------------------------------------------------------------------------- 386 (473)
+..
T Consensus 253 YA~~wIR~~I~~~i~~~~R~irlp~~~~~~l~~lrr~~r~l~~~lgr~pt~eeiA~~l~~~v~~e~V~~~~~~~~~~~SL 332 (438)
T 1l9z_H 253 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPSYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 332 (438)
T ss_pred HHHHHHHHHHHHHHHHhcchhccchHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccccccc
Confidence 100
Q ss_pred ---------------------CCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHH
Q 011992 387 ---------------------EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERV 445 (473)
Q Consensus 387 ---------------------~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rV 445 (473)
..|+..+...+....|..+|..||+++|.||.+||+|+||+++|++|||+.||||++||
T Consensus 333 d~~~~~d~d~~l~d~l~d~~~~~pee~~~~~~~~~~L~~aL~~L~ereR~VI~LRygL~~~e~~TleEIAe~LgIS~erV 412 (438)
T 1l9z_H 333 ETPIGDEKDSFYGDFIPDENLPSPVEAAAQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAYFGVTRERI 412 (438)
T ss_pred ccccccccchhhhhhhcccccCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCCCCHHHHHHHHCcCHHHH
Confidence 01122233445667899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhccCchhhhhh
Q 011992 446 RQLESRALYRLK-QSLGGKASYGYAD 470 (473)
Q Consensus 446 rqi~~RAL~KLR-~~L~~~~l~~yld 470 (473)
+|++++|++||| ..+....+++|++
T Consensus 413 Rqi~~RAlkKLR~~~~~~~~l~~yl~ 438 (438)
T 1l9z_H 413 RQIENKALRKLKYHESRTRKLRDFLE 438 (438)
T ss_pred HHHHHHHHHHHHHhHhhHHHHHHhhC
Confidence 999999999999 7788777888874
No 2
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=99.97 E-value=3.3e-31 Score=277.58 Aligned_cols=217 Identities=33% Similarity=0.549 Sum_probs=175.4
Q ss_pred ChhHHhhhcccCccCCCChHHHHHHHHHHHHHHHHHHHH------------------HHHHHHhCCCCCHHH--------
Q 011992 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEK------------------SKLQSQFGREPTLIE-------- 307 (473)
Q Consensus 254 ~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~kle~a~------------------~~L~~~lGRePT~eE-------- 307 (473)
.++++.|++.+++.|+||+|||++|+++++....+.... ......+|+.|+..|
T Consensus 78 ~d~~~~Yl~ei~~~plLt~eEE~~La~ri~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (423)
T 2a6h_F 78 SDPVRQYLHEIGQVPLLTLEEEVELARKVEEGMEAIKKLSEITGLDPDLIREVVRAKILGSARVRHIPGLKETLDPKTVE 157 (423)
T ss_dssp HHHHHHHHHHHHHCCCCTTHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHTTSCSSSCTTHHHH
T ss_pred CcHHHHHHHHhcccCCCCHHHHHHHHHHHHhchhHHHHHHHhhccchhhhhhhHhhhhhhhhhcccccchhhhhhhhhhh
Confidence 458999999999999999999999999999864322211 111122345665333
Q ss_pred -HH---HHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc
Q 011992 308 -WA---KAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN 383 (473)
Q Consensus 308 -iA---~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT 383 (473)
|+ .+++++..+|...+.+|..|++.||..|+++|+++|++|.+++.+++||+||||+|||+++++|||.+|++|+|
T Consensus 158 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~Li~~~lrlV~~iA~~y~~~~~~~eDLiQEg~igL~kav~kFd~~~g~~Fst 237 (423)
T 2a6h_F 158 EIDQKLKSLPKEHKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 237 (423)
T ss_dssp HHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTTCTTTSCHHHHHHHHHHHHHHHHHHCCTTSCCCHHH
T ss_pred hhhhhhhcccccHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhcCcccCCCHHH
Confidence 32 23567788888888888899999999999999999999999999999999999999999999999999999987
Q ss_pred CC------------------------------------------------------------------------------
Q 011992 384 TG------------------------------------------------------------------------------ 385 (473)
Q Consensus 384 ~~------------------------------------------------------------------------------ 385 (473)
+.
T Consensus 238 Ya~~wIr~~i~~~i~~~~r~ir~p~~~~~~~~~lrr~~~~l~~~~~r~p~~~eiA~~l~~~~~~~~v~~~~~~~~~~~Sl 317 (423)
T 2a6h_F 238 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQLQQELGREPTYEEIAEAMGPGWDAKRVEETLKIAQEPVSL 317 (423)
T ss_dssp HHHHHHHHHHHHHHHHHSSSSCCCHHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHCTTCCHHHHHHHHHHHSCCEES
T ss_pred HHHHHHHHHHHHHHHHccceeeccHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCCCHHHHHHHHHhccCCccc
Confidence 00
Q ss_pred --------------------CCCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHH
Q 011992 386 --------------------VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERV 445 (473)
Q Consensus 386 --------------------~~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rV 445 (473)
...|+..+...++...|..+|..||+++|.||.+||+|+||+++|++|||+.||||++||
T Consensus 318 d~~~~~~~~~~l~d~l~d~~~~~pe~~~~~~~~~~~L~~aL~~L~~rer~Vl~lr~~L~~~e~~Tl~EIA~~lgiS~erV 397 (423)
T 2a6h_F 318 ETPIGDEKDSFYGDFIPDEHLPSPVDAATQSLLSEELEKALSKLSEREAMVLKLRKGLIDGREHTLEEVGAFFGVTRERI 397 (423)
T ss_dssp SCBCSSSSSCBGGGSSCCSSSCCHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHTTCC-----CHHHHSSSSCHHHH
T ss_pred ccccCCCCccchhhhhccccCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHhccCCCCCCCHHHHHHHHCcCHHHH
Confidence 012344455666778899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHH-HHhccCchhhhhh
Q 011992 446 RQLESRALYRLK-QSLGGKASYGYAD 470 (473)
Q Consensus 446 rqi~~RAL~KLR-~~L~~~~l~~yld 470 (473)
+|++++|++||| ..+....+++|++
T Consensus 398 rqi~~rAl~kLR~~~~~~~~l~~~l~ 423 (423)
T 2a6h_F 398 RQIENKALRKLKYHESRTRKLRDFLD 423 (423)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSSSCCC
T ss_pred HHHHHHHHHHHHhhhhhhHHHHHhhC
Confidence 999999999999 7888888888874
No 3
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=99.91 E-value=8.3e-25 Score=213.81 Aligned_cols=199 Identities=28% Similarity=0.430 Sum_probs=114.5
Q ss_pred ChhHHhhhcccCccCCCChHHHHHHHHHHHHHHH-HHHHHHH------HHHH-------------------hCCCCCHHH
Q 011992 254 NDPLRLFLWGPETRKLLTADEEFELIAQIQDLIR-LEKEKSK------LQSQ-------------------FGREPTLIE 307 (473)
Q Consensus 254 ~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~k-le~a~~~------L~~~-------------------lGRePT~eE 307 (473)
.|++|.|+..+.++|+||++||++|+++|+.+.. .+.+... +... .+++|+..+
T Consensus 6 ~d~~~~yl~~i~~~~llt~~~e~~la~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~g~~~~~~~~~~~ 85 (245)
T 3ugo_A 6 SDPVRQYLHEIGQVPLLTLEEEIDLARKVEEGMEAIKKLSEATGLDQELIREVVRAKILGTARIQKIPGLKEKPDPKTVE 85 (245)
T ss_dssp CHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHTTGGGCSCCCCTTCCCCCCHHHHH
T ss_pred CCcHHHHHHHcccccCCCHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHhhhhhhhccchhcccccccccccchhHH
Confidence 5789999999999999999999999999998654 3333211 1000 146889999
Q ss_pred HHHHcCCCH----HHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc
Q 011992 308 WAKAIGLSC----RDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN 383 (473)
Q Consensus 308 iA~~lGms~----eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT 383 (473)
||.+.|++. .++...+.+|..|++.||..|.++|+++|++|.+++.+++|++||||+|+|+++++||+.+|++|+|
T Consensus 86 ~~~~~~~~~~~~~~~L~~~~~~d~~A~~~L~~~y~~lV~~ia~r~~~~~~~aeDLvQegfi~L~~a~~~fd~~~g~~F~t 165 (245)
T 3ugo_A 86 EVDGKLKSLPKELKRYLHIAREGEAARQHLIEANLRLVVSIAKKYTGRGLSFLDLIQEGNQGLIRAVEKFEYKRRFKFST 165 (245)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHGGGTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCCHHH
T ss_pred HHHHhhccchHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCcccCCcHHH
Confidence 999988753 4566777888899999999999999999999999999999999999999999999999999999988
Q ss_pred CCCCCchHHHHHH--------HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC--CCHHHHHHHHHHHH
Q 011992 384 TGVEIPDISVQKQ--------LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG--LSKERVRQLESRAL 453 (473)
Q Consensus 384 ~~~~~pee~le~~--------el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG--IS~~rVrqi~~RAL 453 (473)
+..+.....+... ..-..+.+.+..|++..+.+ ...|+ +++|++|||+.|| ||.++|+.++.+|+
T Consensus 166 ya~~~ir~~i~~~ir~~~r~~r~p~~l~e~i~~l~~~~~~L-~~~~~----~~ps~~EIAe~Lg~~is~~tVk~~l~~ar 240 (245)
T 3ugo_A 166 YATWWIRQAINRAIADQARTIRIPVHMVETINKLSRTARQL-QQELG----REPSYEEIAEAMGPGWDAKRVEETLKIAQ 240 (245)
T ss_dssp HHHHHHHHHHHHHHHHHTC-------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHH-HHHhC----CCCCHHHHHHHHCCCCCHHHHHHHHHHHh
Confidence 4433332222110 11224666778888888774 44555 8999999999999 99999999999998
Q ss_pred HHHH
Q 011992 454 YRLK 457 (473)
Q Consensus 454 ~KLR 457 (473)
+.|.
T Consensus 241 ~~ls 244 (245)
T 3ugo_A 241 EPVS 244 (245)
T ss_dssp ----
T ss_pred hccC
Confidence 7763
No 4
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=99.84 E-value=2.9e-22 Score=218.54 Aligned_cols=155 Identities=34% Similarity=0.672 Sum_probs=135.3
Q ss_pred HHHHHHHHhhcc-hH---HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCccccC-------
Q 011992 316 CRDLKSELHSGN-SS---REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANT------- 384 (473)
Q Consensus 316 ~eeL~~~l~~g~-~A---~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT~------- 384 (473)
..+|...+..|+ .| |+.||..|+++|+++|++|.+++.+++||+||||+|||+++++|++.+|++|+|+
T Consensus 358 ~~~Li~~~~~Gd~~A~~A~~~L~~~y~~~v~~ia~r~~~~~~~aeDlvQE~fi~l~~a~~~fd~~~g~~Fstyl~~~irn 437 (613)
T 3iyd_F 358 VKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 437 (613)
T ss_dssp HHHHHHTHHHHHHHHHHHHTTTTTTTTHHHHHGGGSSSTTSSCSTTTTHHHHHHHHHHTTSCCTTSSSCSTTTHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHcCccccCcHHHHHHHHHHH
Confidence 445566566665 55 9999999999999999999999999999999999999999999999999999870
Q ss_pred ---------C----------------------------------------------------------------------
Q 011992 385 ---------G---------------------------------------------------------------------- 385 (473)
Q Consensus 385 ---------~---------------------------------------------------------------------- 385 (473)
.
T Consensus 438 ~i~~~lr~~~r~~rip~~~~~~~~k~~r~~~~l~~~~gr~pt~eela~~l~~~~~~v~~~~~~~~~~~sld~~~~~~~~~ 517 (613)
T 3iyd_F 438 AITRSIADQARTIRIPVHMIETINKLNRISRQMLQEMGREPTPEELAERMLMPEDKIRKVLKIAKEPISMETPIGDDEDS 517 (613)
T ss_dssp HHHHHTTTSCSSSCCCSHHHHTTTTTTTTTTTTTTTTCSCCCTTTTTTTSSCCSSHHHHHHHHSCCCCCSSCCCSSSSSC
T ss_pred HHHHHHHhcCcceeCcHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCCCHHHHHHHHHhccCCcccCCCCCCCCCc
Confidence 0
Q ss_pred ----------CCCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011992 386 ----------VEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 455 (473)
Q Consensus 386 ----------~~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~K 455 (473)
...|+..+...++...|..+|..||+++|.||.|+|++++++++|++|||+.||||++||++++++|+++
T Consensus 518 ~l~d~i~d~~~~~p~~~~~~~e~~~~l~~aL~~Lp~~er~Vl~Lr~~~~~~e~~s~~EIA~~lgis~~tVk~~~~rAl~k 597 (613)
T 3iyd_F 518 HLGDFIEDTTLELPLDSATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDHTLEEVGKQFDVTRERIRQIEAKALRK 597 (613)
T ss_dssp CGGGSCCCSSSCCHHHHHHHHTTSSSHHHHTTSSCHHHHHHHHHHHTSSSCCCCSTTGGGTTTSSCSSHHHHHHHHHHTT
T ss_pred cHHHHhcCCCCCCHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCCCCcCHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 0134455555666678999999999999999999999988899999999999999999999999999999
Q ss_pred HHHHhccCchhhhhh
Q 011992 456 LKQSLGGKASYGYAD 470 (473)
Q Consensus 456 LR~~L~~~~l~~yld 470 (473)
||+.+....++.|++
T Consensus 598 LR~~~~~~~l~~~l~ 612 (613)
T 3iyd_F 598 LRHPSRSEVLRSFLD 612 (613)
T ss_dssp TTSCSSSCSSTTCC-
T ss_pred hhCcchhhHHHHHhc
Confidence 999999988988886
No 5
>2q1z_A RPOE, ECF SIGE; ECF sigma factor, cupin fold, zinc bindin transcription factor; 2.40A {Rhodobacter sphaeroides} PDB: 2z2s_A
Probab=99.83 E-value=2.4e-20 Score=170.05 Aligned_cols=142 Identities=13% Similarity=0.078 Sum_probs=124.6
Q ss_pred CCHHHHHHH-Hhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc--------
Q 011992 314 LSCRDLKSE-LHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN-------- 383 (473)
Q Consensus 314 ms~eeL~~~-l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT-------- 383 (473)
++.++|... +..|+ .+++.|+..|.+.|+++|+++.++..+++|++||+|+.+|+++++|++..| .|.+
T Consensus 11 ~~~~~li~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~~~~~aeD~~Qe~~l~~~~~~~~~~~~~~-~~~~wl~~i~~n 89 (184)
T 2q1z_A 11 TDWVALMRAIRDHRDEAAFAELFQHFAPKVKGFLMKSGSVASQAEECAQDVMATVWQKAHLFDPSRA-SVATWIFTIARN 89 (184)
T ss_dssp TCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHSGGGCCTTTC-CHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHhhhhcCcccC-cHHHHHHHHHHH
Confidence 556667766 66665 999999999999999999999999999999999999999999999988764 5655
Q ss_pred ---------------------CCCCCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCH
Q 011992 384 ---------------------TGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442 (473)
Q Consensus 384 ---------------------~~~~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~ 442 (473)
.....|+..+...+....|..+|+.||+++|.||.|+|+ +|+|++|||+.||||+
T Consensus 90 ~~~d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~ 165 (184)
T 2q1z_A 90 RRIDGLRKDRQPEPEDLFWGPDSEPDQADVYEMQQENARLGRAIARLPEAQRALIERAFF----GDLTHRELAAETGLPL 165 (184)
T ss_dssp SCCTTTCSSSCCCCCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHH----SCCSSCCSTTTCCCCC
T ss_pred HHHHHHHhhcccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCH
Confidence 112345666777778888999999999999999999999 9999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 011992 443 ERVRQLESRALYRLKQSL 460 (473)
Q Consensus 443 ~rVrqi~~RAL~KLR~~L 460 (473)
++|++++++|+++||+.+
T Consensus 166 ~tV~~~l~ra~~~Lr~~l 183 (184)
T 2q1z_A 166 GTIKSRIRLALDRLRQHM 183 (184)
T ss_dssp HHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 999999999999999876
No 6
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=99.82 E-value=1e-19 Score=171.30 Aligned_cols=131 Identities=27% Similarity=0.395 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHhh---cCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc---------------CC----
Q 011992 328 SSREKLINANLRLVVHVAKQYQ---GRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN---------------TG---- 385 (473)
Q Consensus 328 ~A~e~Li~~yl~lV~sIA~ry~---~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT---------------~~---- 385 (473)
.+++.||..|.++|+++|+++. ++..+++|++||+++++|+++++|++.+|..|.+ ..
T Consensus 12 ~a~~~l~~~~~~~v~~~a~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~~~~~~~~d~~r~~~~~~ 91 (239)
T 1rp3_A 12 IEREELILKYLPLVKAIATNIKKHLPEDVDIRDLISYGVIGLIKAVDNLSTENPKRAEAYIKLRIKGAIYDYLRSLDFGS 91 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCTTSCHHHHHHHHHHHHHHHHHTCCCCCTHHHHHHHHHHHHHHHHHHHHTSSTTC
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHhcCccc
Confidence 5899999999999999999998 7889999999999999999999999988878877 10
Q ss_pred -------------------------------------------------------------------------CCCchHH
Q 011992 386 -------------------------------------------------------------------------VEIPDIS 392 (473)
Q Consensus 386 -------------------------------------------------------------------------~~~pee~ 392 (473)
...|+..
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~sl~~~~~~~~~~~~~~~~~~~~~~~~ 171 (239)
T 1rp3_A 92 RQVREKERRIKEVVEKLKEKLGREPTDEEVAKELGISTEELFKTLDKINFSYILSLEEVFRDFARDYSELIPSSTNVEEE 171 (239)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTGGGSCHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHhCcCHHHHHHHHHHhccCCCccccccccCCCcccccccCCCCCHHHH
Confidence 1122333
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 393 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 393 le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
+...+....|..+|..||+++|.||.++|+ +++|++|||+.||||.++|++++++|+++||+.+..
T Consensus 172 ~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~~V~~~~~ra~~~Lr~~l~~ 237 (239)
T 1rp3_A 172 VIKRELTEKVKEAVSKLPEREKLVIQLIFY----EELPAKEVAKILETSVSRVSQLKAKALERLREMLSN 237 (239)
T ss_dssp HHHHHHHHHHHHHHTTSCHHHHHHHHHHHT----SCCCHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHh----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhc
Confidence 444556678999999999999999999998 999999999999999999999999999999998864
No 7
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=99.80 E-value=1.6e-19 Score=165.55 Aligned_cols=140 Identities=18% Similarity=0.190 Sum_probs=116.6
Q ss_pred HHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc-----------
Q 011992 316 CRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN----------- 383 (473)
Q Consensus 316 ~eeL~~~l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT----------- 383 (473)
..+|...+..|+ .+++.|+..|.+.|+++|+++.+ ..+++|++||+|+++|+++++|++.. .|.+
T Consensus 10 ~~~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~~~-~~~aeDl~Qe~~l~~~~~~~~~~~~~--~~~~~l~~i~~n~~~ 86 (194)
T 1or7_A 10 DQVLVERVQKGDQKAFNLLVVRYQHKVASLVSRYVP-SGDVPDVVQEAFIKAYRALDSFRGDS--AFYTWLYRIAVNTAK 86 (194)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTSC-GGGHHHHHHHHHHHHHHHGGGCCSSS--CHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHcC-HHhHHHHHHHHHHHHHHhHHhcCCcc--chHHHHHHHHHHHHH
Confidence 445666665665 89999999999999999999999 99999999999999999999998764 3555
Q ss_pred --------CC------------C---------CCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHH
Q 011992 384 --------TG------------V---------EIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEV 434 (473)
Q Consensus 384 --------~~------------~---------~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEI 434 (473)
.. . ..|+..+...+....|..+|..||+++|.||.|+|+ +|+|++||
T Consensus 87 d~~R~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EI 162 (194)
T 1or7_A 87 NYLVAQGRRPPSSDVDAIEAENFESGGALKEISNPENLMLSEELRQIVFRTIESLPEDLRMAITLREL----DGLSYEEI 162 (194)
T ss_dssp HHHHHHTTCCTHHHHHHHHHHSCCSSCC--------CEEEHHHHHHHHHHHHHHSCHHHHHHHHHHHT----TCCCHHHH
T ss_pred HHHHHHhccCccccccccccccccccccccCCCChHHHHHHHHHHHHHHHHHHhCCHHHHHHhHHHHH----cCCCHHHH
Confidence 00 0 112222233456678899999999999999999998 99999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 435 GNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 435 Ae~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
|+.||+|+++|+++++||+++||+.+..
T Consensus 163 A~~lgis~~tV~~~l~ra~~~Lr~~l~~ 190 (194)
T 1or7_A 163 AAIMDCPVGTVRSRIFRAREAIDNKVQP 190 (194)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998864
No 8
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=99.74 E-value=1.6e-19 Score=169.64 Aligned_cols=138 Identities=30% Similarity=0.520 Sum_probs=0.3
Q ss_pred HHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCccccCC---------
Q 011992 316 CRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFANTG--------- 385 (473)
Q Consensus 316 ~eeL~~~l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT~~--------- 385 (473)
..+|...+..|+ .+++.||..|.++|+++|+++.++..+++|++||+++++|+++++|++.+|..|.+..
T Consensus 15 ~~~l~~~~~~gd~~a~~~l~~~~~~~v~~~~~~~~~~~~~aeDl~Qe~~l~l~~~~~~~~~~~~~~f~~~l~~i~~~~~~ 94 (243)
T 1l0o_C 15 MKELIRRSQEGDQEARDEIIEKNMRLVWSVVQRFLNRGYEADDLFQIGCIGLLKSVDKFDLSYDVKFSTYAVPMIIGEIQ 94 (243)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHhHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHH
Confidence 344555555554 9999999999999999999999999999999999999999999999998777787611
Q ss_pred ------C---------------------------CCc-------------------------------------------
Q 011992 386 ------V---------------------------EIP------------------------------------------- 389 (473)
Q Consensus 386 ------~---------------------------~~p------------------------------------------- 389 (473)
. ..+
T Consensus 95 d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~ 174 (243)
T 1l0o_C 95 RFLRDDGTVKVSRSLKEMGNKIRKAKDELSKTRGRAPTVTEIADHLGISPEDVVLAQEAVRLPTSIHETVYENDGDPITL 174 (243)
T ss_dssp -----CCCCTTHHHHHHHHHHHHHHHHHHHHHHTSCCBHHHHHHHHTSCHHHHHHHHHHHHC------------------
T ss_pred HHHHhcCCccCcHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHhccccCccccccccCCcccch
Confidence 0 000
Q ss_pred -----hHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 390 -----DISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 390 -----ee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
+..+...+....|..+|..||+++|.||.|+|+ +|+|++|||+.||||.++|++++++|+++||
T Consensus 175 ~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr 243 (243)
T 1l0o_C 175 LDQIADADEASWFDKIALKKAIEELDERERLIVYLRYY----KDQTQSEVASRLGISQVQMSRLEKKILQHIK 243 (243)
T ss_dssp -------------------------------------------------------------------------
T ss_pred hhccCcchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHh----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHcC
Confidence 111222344567889999999999999999998 9999999999999999999999999999997
No 9
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=99.64 E-value=9.2e-16 Score=135.77 Aligned_cols=107 Identities=15% Similarity=0.230 Sum_probs=88.3
Q ss_pred CcchhhHhhhhHHHHHHHhhhhCccCCCcccc-----------------------------CC-----------------
Q 011992 352 GISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN-----------------------------TG----------------- 385 (473)
Q Consensus 352 ~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT-----------------------------~~----------------- 385 (473)
|.+++|++||+++++|+++.+|++.+ ..|.+ ..
T Consensus 1 g~daeDl~Qe~~~~l~~~~~~~~~~~-~~f~~~l~~i~~n~~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (164)
T 3mzy_A 1 GAEKEDLVQEGILGLLKAIKFYDETK-SSFSSFAFLCIRREMISAIRKANTQKHMVLNEALKTNAILEDSAYFDDEGHNI 79 (164)
T ss_dssp ----CTTHHHHHHHHHHHHHHCCTTT-SCHHHHHHHHHHHHHHHHHHHHHHCC---------------------------
T ss_pred CCcHHHHHHHHHHHHHHHHHHhCccC-CChHHHhHHHHHHHHHHHHHHhhcccchhhHHHhhhhhhhccCCCCCcccchh
Confidence 46889999999999999999999876 67777 00
Q ss_pred ------CCCchHHHHHHHHHHHHHHHHh-hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 386 ------VEIPDISVQKQLMRQHVRNLLT-LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 386 ------~~~pee~le~~el~e~L~~aL~-~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
...|+..+...+....|..+|. .||+++|.||. +|+ +|+|++|||+.||||.++|+++++||+++||+
T Consensus 80 ~~~~~~~~~~~~~~~~~e~~~~l~~~l~~~L~~~~r~v~~-~~~----~g~s~~EIA~~lgis~~tV~~~~~ra~~~Lr~ 154 (164)
T 3mzy_A 80 NNYKSSESNPEEAYLLKEEIEEFKKFSENNFSKFEKEVLT-YLI----RGYSYREIATILSKNLKSIDNTIQRIRKKSEE 154 (164)
T ss_dssp ----------CHHHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHT----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred hhhcccCCCHHHHHHHHHHHHHHHHHHHhhCCHHHHHHHH-HHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 1145566677777888999999 99999999999 677 89999999999999999999999999999999
Q ss_pred HhccCc
Q 011992 459 SLGGKA 464 (473)
Q Consensus 459 ~L~~~~ 464 (473)
.+...+
T Consensus 155 ~l~~~~ 160 (164)
T 3mzy_A 155 WIKEEE 160 (164)
T ss_dssp HHHHHT
T ss_pred HHHHcC
Confidence 987543
No 10
>2lfw_A PHYR sigma-like domain; signal transduction, response regulator, sigma factor mimicr sigma factor, general stress response, signaling protein; NMR {Sphingomonas SP}
Probab=99.60 E-value=1e-17 Score=151.26 Aligned_cols=125 Identities=11% Similarity=0.110 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc-----------------C-CCCCchH
Q 011992 330 REKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN-----------------T-GVEIPDI 391 (473)
Q Consensus 330 ~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT-----------------~-~~~~pee 391 (473)
|+.||..|.+.|+++|+++.++..+++|++||+|+++|+++++|++.. .|.+ . ....++
T Consensus 3 f~~l~~~~~~~l~~~~~~~~~~~~~AeDlvQe~fl~~~~~~~~~~~~~--~~~~wl~~ia~n~~~d~~R~~~~~~~~~e- 79 (157)
T 2lfw_A 3 LGQQLAPHLPFLRRYGRALTGSQNQGDKYVRATLEAIVAAPDQFPRDV--DPRLGLYRMFQGIWASANADGEAQTSQSD- 79 (157)
T ss_dssp GGGGTGGGGGGGTTTGGGTTSCHHHHHHHHHHHHHTTTTCGGGCCCSS--CTTHHHHHHHHHHHHHHTTTTSCCCCCCS-
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHcCCCC--cHHHHHHHHHHHHHHHHhhccCcccCCcc-
Confidence 567889999999999999999999999999999999999999998653 3444 1 011111
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCc
Q 011992 392 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 464 (473)
Q Consensus 392 ~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~ 464 (473)
..+....|..+|..||+++|+||.|+|+ +|+|++|||+.||||+++|++++.||+++||+.+....
T Consensus 80 ---~~~~~~~l~~~l~~Lp~~~r~vl~L~~~----~g~s~~EIA~~lgis~~tV~~~l~rar~~Lr~~l~~~~ 145 (157)
T 2lfw_A 80 ---AEGTEAVARARLARMTPLSRQALLLTAM----EGFSPEDAAYLIEVDTSEVETLVTEALAEIEKQTRALE 145 (157)
T ss_dssp ---CSSSSSTTTTTTTTSCTTHHHHHTTTSS----SCCCHHHHHHTTTSCHHHHHHHHHHHHHHHHTTSSCCC
T ss_pred ---hHHHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1233456788999999999999999999 99999999999999999999999999999999887653
No 11
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=99.50 E-value=7.5e-14 Score=118.75 Aligned_cols=79 Identities=29% Similarity=0.514 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCchhhhhh
Q 011992 392 SVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 470 (473)
Q Consensus 392 ~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l~~yld 470 (473)
.+...++...|..+|+.||+++|.||.|+|+++|++++|++|||+.||||.++|++++.+|+++||..+....+..|+.
T Consensus 3 ~~~~~el~~~l~~aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~lgiS~~tVr~~~~rAlkkLR~~~~~~~l~~~~~ 81 (99)
T 3t72_q 3 SATTESLRAATHDVLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSGSS 81 (99)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778899999999999999999999999888899999999999999999999999999999999999988888875
No 12
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.46 E-value=2.8e-14 Score=141.23 Aligned_cols=126 Identities=11% Similarity=0.032 Sum_probs=106.0
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCcccc-----------C------CCC
Q 011992 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFAN-----------T------GVE 387 (473)
Q Consensus 325 ~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~FsT-----------~------~~~ 387 (473)
++..+|+.||..|.+.++++|++++++..+++|++||.|+.+|++.++|++.. .|.+ + ...
T Consensus 18 g~~~~f~~l~~~~~~~l~~~a~~~~~~~~~AeD~vQe~fl~~~~~~~~~~~~~--~~~~wL~~ia~n~~~d~~r~~~~~~ 95 (286)
T 3n0r_A 18 GSEMHLLARLAPHLPYIRRYARALTGDQATGDHYVRVALEALAAGELVLDANL--SPRVALYRVFHAIWLSSGAQLEVGH 95 (286)
T ss_dssp --CCCHHHHHGGGHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTSSCCCSSS--CHHHHHHHHHHHHHSCTTC----CC
T ss_pred CCcCCHHHHHHHHHHHHHHHHHHHhCCHhhHHHHHHHHHHHHHhCchhcCCCc--ChHHHHHHHHHHHHHhhccccccCC
Confidence 44589999999999999999999999999999999999999999999997643 4554 0 000
Q ss_pred CchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 388 IPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 388 ~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
.+. .+....|..+|+.||+++|.||.|+|+ +++|++|||+.+|++.++|+..+.+|+.+|+..+.
T Consensus 96 ~~~-----~~~~~~l~~al~~Lp~~~R~v~~L~~~----eg~s~~EIA~~lgis~~tVks~l~rA~~~Lr~~l~ 160 (286)
T 3n0r_A 96 DQG-----LHAGDDAAQRLMRIAPRSRQAFLLTAL----EGFTPTEAAQILDCDFGEVERLIGDAQAEIDAELA 160 (286)
T ss_dssp CCC-----CCTTSHHHHHHHHHSCHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHTSCC
T ss_pred Ccc-----cchHHHHHHHHHhCCHHHeeEEEEEee----CCCCHHHHHHHhCcCHHHHHHHHHHHHhhhhccCC
Confidence 110 112346899999999999999999999 99999999999999999999999999999997654
No 13
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=99.32 E-value=2e-12 Score=106.38 Aligned_cols=73 Identities=38% Similarity=0.725 Sum_probs=66.9
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCchhhhhhh
Q 011992 399 RQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYADL 471 (473)
Q Consensus 399 ~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l~~yldl 471 (473)
...|..+|+.||+++|.||.++|+|++++++|++|||+.||||.++|++++.+|+++||..+....+..|+..
T Consensus 9 ~~~l~~~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~lgis~~tV~~~~~ra~~kLr~~l~~~~~~~~~~~ 81 (87)
T 1tty_A 9 REELEKVLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYFNVTRERIRQIEVKALRKLRHPSRSKYLKSLLSL 81 (87)
T ss_dssp CSHHHHHHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHBTTBSSHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3568889999999999999999998888999999999999999999999999999999999888777777653
No 14
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=99.32 E-value=7.5e-12 Score=103.60 Aligned_cols=76 Identities=16% Similarity=0.201 Sum_probs=70.5
Q ss_pred CCCCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCc
Q 011992 385 GVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 464 (473)
Q Consensus 385 ~~~~pee~le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~ 464 (473)
....|++.+...+....|..+|..||+++|.||.|+|+ +|+|++|||+.||||.++|++++++|+++||+.+...+
T Consensus 14 ~~~~~~~~~~~~~~~~~l~~~l~~L~~~~r~vl~l~~~----~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~~ 89 (92)
T 3hug_A 14 PEQSTPDEVNAALDRLLIADALAQLSAEHRAVIQRSYY----RGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQELG 89 (92)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCCCchHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 34578888999999999999999999999999999998 99999999999999999999999999999999987543
No 15
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=99.28 E-value=1.4e-12 Score=103.51 Aligned_cols=68 Identities=32% Similarity=0.627 Sum_probs=55.6
Q ss_pred HHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH-HHhccCchhhhh
Q 011992 402 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK-QSLGGKASYGYA 469 (473)
Q Consensus 402 L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR-~~L~~~~l~~yl 469 (473)
|..+|+.||++++.||.++|+|++++++|++|||+.||+|.++|++++.+|+++|| ..+....+..|+
T Consensus 4 l~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l~is~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 72 (73)
T 1ku3_A 4 LEKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYFGVTRERIRQIENKALRKLKYHESRTRKLRDFL 72 (73)
T ss_dssp CSSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTC---------
T ss_pred HHHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHhhHhhHHHHHHhh
Confidence 45678899999999999999988889999999999999999999999999999999 888777777775
No 16
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=99.23 E-value=3.9e-12 Score=99.61 Aligned_cols=66 Identities=33% Similarity=0.614 Sum_probs=60.0
Q ss_pred HHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCchhhhhh
Q 011992 405 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKASYGYAD 470 (473)
Q Consensus 405 aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l~~yld 470 (473)
+|+.||+++++||.++|++++.+++|++|||+.||+|+++|++++.+|+++||..+....+..|++
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~lgis~~tV~~~~~ra~~kLr~~~~~~~~~~~~~ 67 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSEVLRSFLD 67 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHHTCCHHHHHHHHHHHHHGGGSCCGGGGGSCTTC
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 467899999999999997766699999999999999999999999999999999988887777764
No 17
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=99.06 E-value=2.7e-10 Score=88.33 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=55.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCch
Q 011992 397 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 465 (473)
Q Consensus 397 el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l 465 (473)
+....+..+|+.||++++.||.++|+ +++|++|||+.||+|.++|++++++|+++||..+....+
T Consensus 4 e~~~~l~~~l~~L~~~~r~il~l~~~----~g~s~~eIA~~lgis~~tv~~~~~ra~~~l~~~l~~~~~ 68 (70)
T 2o8x_A 4 EDLVEVTTMIADLTTDQREALLLTQL----LGLSYADAAAVCGCPVGTIRSRVARARDALLADAEPDDL 68 (70)
T ss_dssp HHHHHHHTTTTSSCHHHHHHHHHHHT----SCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhhcccC
Confidence 45667889999999999999999998 999999999999999999999999999999998876543
No 18
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=98.93 E-value=2.8e-09 Score=92.16 Aligned_cols=69 Identities=22% Similarity=0.202 Sum_probs=62.6
Q ss_pred HHHHHHHHHHHHHH-hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCch
Q 011992 393 VQKQLMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 465 (473)
Q Consensus 393 le~~el~e~L~~aL-~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l 465 (473)
++..+....+..+| ..||+++|.||.++|+ +|+|++|||+.||+|+++|+.+++||+++||..+....+
T Consensus 9 ~e~~~~~~~l~~~l~~~L~~~~r~vl~l~~~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 78 (113)
T 1xsv_A 9 LVKTLRMNYLFDFYQSLLTNKQRNYLELFYL----EDYSLSEIADTFNVSRQAVYDNIRRTGDLVEDYEKKLEL 78 (113)
T ss_dssp HHHHHHHHHHHHHHGGGSCHHHHHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 45556677899999 9999999999999998 999999999999999999999999999999999876544
No 19
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=98.77 E-value=1e-08 Score=88.84 Aligned_cols=65 Identities=20% Similarity=0.181 Sum_probs=59.0
Q ss_pred HHHHHHHHHH-hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCch
Q 011992 397 LMRQHVRNLL-TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKAS 465 (473)
Q Consensus 397 el~e~L~~aL-~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~l 465 (473)
.....+.+++ ..||++++.||.++|+ +|+|++|||+.||+|+++|+.++++|+.+||..+...++
T Consensus 10 ~~~~~l~~~l~~~L~~~~r~vl~l~y~----~g~s~~EIA~~lgiS~~tV~~~l~ra~~kLr~~l~~~~~ 75 (113)
T 1s7o_A 10 NRMNALFEFYAALLTDKQMNYIELYYA----DDYSLAEIADEFGVSRQAVYDNIKRTEKILETYEMKLHM 75 (113)
T ss_dssp HHHHHHHHHHGGGSCHHHHHHHHHHHH----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456788888 8999999999999998 999999999999999999999999999999999876544
No 20
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.77 E-value=6.3e-10 Score=108.14 Aligned_cols=135 Identities=10% Similarity=-0.000 Sum_probs=99.9
Q ss_pred HHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh----hhhHHHHHHHhhhhCccCCCcccc---------
Q 011992 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLL----QEGSMGLMKSVEKFKPQAGCRFAN--------- 383 (473)
Q Consensus 318 eL~~~l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi----QEg~lgL~kAiekFDp~kg~~FsT--------- 383 (473)
.+...++.++ .+++.+...|.++++.+..........+.|+. ||.++.+|+.+..|++.. .|.+
T Consensus 86 ~ll~~i~p~D~~~~~~~~~~~~~fi~~l~~~~~~~~~~~~dl~~~~~qe~fl~~~~~~~~~~~~~--~~~~WL~~ia~n~ 163 (258)
T 3clo_A 86 CIYRRIHPEDLVEKRLMEYKFFQKTFSMSPGERLKYRGRCRLRMMNEKGVYQYIDNLVQIMQNTP--AGNVWLIFCLYSL 163 (258)
T ss_dssp HHHTTBCHHHHHHHHHHHHHHHHHHTTSCHHHHTTEEEEEEEEEECTTSCEEEEEEEEEEEEECT--TSCEEEEEEEEEE
T ss_pred HHHHhCChHHHHHHHHHHHHHHHHHHhcCHHhccCCeeeEEeecCCcCHHHHHHHHhHHhcCCCC--chHHHHHHHHHHH
Confidence 3444445454 67899999999999999888877778888886 999999999999887543 2333
Q ss_pred --CC--C----CCchHHHHHH-HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 384 --TG--V----EIPDISVQKQ-LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 384 --~~--~----~~pee~le~~-el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
+. . .......... .....+..++..||+++|+||.|+ + +|+|.+|||+.||+|.++|+.+++||++
T Consensus 164 ~~d~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~erevl~L~-~----~G~s~~EIA~~L~iS~~TVk~~l~ra~~ 238 (258)
T 3clo_A 164 SADQRPEQGIYATITQMERGEVETLSLSEEHRNILSEREKEILRCI-R----KGLSSKEIAATLYISVNTVNRHRQNILE 238 (258)
T ss_dssp CSCCCCCSSCCCEEEETTTTEEEECCCHHHHTTSSCHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HcchhhhhHHHHHHHhhcccccccchhhHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 00 0 0000000000 000135677899999999999998 5 8999999999999999999999999999
Q ss_pred HHHHH
Q 011992 455 RLKQS 459 (473)
Q Consensus 455 KLR~~ 459 (473)
|||..
T Consensus 239 kL~~~ 243 (258)
T 3clo_A 239 KLSVG 243 (258)
T ss_dssp HTTCS
T ss_pred HHcCC
Confidence 99864
No 21
>1sig_A Sigma70, RNA polymerase primary sigma factor; RNA polymerase sigma factor, transcription regulation; 2.60A {Escherichia coli} SCOP: a.177.1.1
Probab=98.71 E-value=1.5e-08 Score=102.42 Aligned_cols=77 Identities=38% Similarity=0.755 Sum_probs=62.9
Q ss_pred HHHHcCCCHH---HHHHHHhhc-c---hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCc
Q 011992 308 WAKAIGLSCR---DLKSELHSG-N---SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCR 380 (473)
Q Consensus 308 iA~~lGms~e---eL~~~l~~g-~---~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~ 380 (473)
+....|++.. .|...+..| . .|++.||..|+++|+++|++|.+++.+++|++||||+|||+++++|++.+|.+
T Consensus 238 ie~~~~l~~~~~~~l~~~~~~gd~~~~~A~~~L~~~~~~~v~~~a~~~~~~~~~aeDlvQe~~i~l~~a~~~f~~~~g~~ 317 (339)
T 1sig_A 238 IEEETGLTIEQVKDINRRMSIGEAKARRAKKEMVEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYK 317 (339)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHTTSTTSSSCHHHHHHHHHHHHHHHHHHCCGGGCCC
T ss_pred HHHHcCCChHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHHHHHHhcCCCCHhHHHHHHHHHHHHHHHHhCCccCCC
Confidence 3444455443 344444444 4 79999999999999999999999999999999999999999999999988888
Q ss_pred cccC
Q 011992 381 FANT 384 (473)
Q Consensus 381 FsT~ 384 (473)
|+|+
T Consensus 318 f~tw 321 (339)
T 1sig_A 318 FSTY 321 (339)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 22
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=98.56 E-value=8.5e-08 Score=79.95 Aligned_cols=60 Identities=20% Similarity=0.241 Sum_probs=45.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 397 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 397 el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+....|..+|..|+++|++||.++ . +|+|++|||+.||||..+|+.++.++++||+..-.
T Consensus 16 ~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~~ 75 (95)
T 3c57_A 16 PRGSHMQDPLSGLTDQERTLLGLL-S----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLGMERR 75 (95)
T ss_dssp -----------CCCHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCCH
Confidence 445678889999999999999997 5 89999999999999999999999999999986543
No 23
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=98.56 E-value=2.6e-08 Score=82.07 Aligned_cols=62 Identities=21% Similarity=0.196 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 393 VQKQLMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 393 le~~el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.........+..++..|+++|++||.++ . +|+|++|||+.||||.++|+.++.++++||+..
T Consensus 14 ~~~~~~~~~l~~~l~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~ 75 (91)
T 2rnj_A 14 VPRGSHMKKRAELYEMLTEREMEILLLI-A----KGYSNQEIASASHITIKTVKTHVSNILSKLEVQ 75 (91)
T ss_dssp -----------CTGGGCCSHHHHHHHHH-H----TTCCTTHHHHHHTCCHHHHHHHHHHHHHHTTCC
T ss_pred CCcHHHHHHHHHHHhcCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCCC
Confidence 3344556778889999999999999995 5 899999999999999999999999999999753
No 24
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=98.56 E-value=9.7e-08 Score=75.71 Aligned_cols=54 Identities=15% Similarity=0.190 Sum_probs=50.0
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 400 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 400 e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
..+..++..|+++|+.||.++ + +|+|++|||+.||+|..+|++++.++++||+.
T Consensus 8 ~~l~~~l~~L~~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~~~r~~~kl~~ 61 (79)
T 1x3u_A 8 NDIRARLQTLSERERQVLSAV-V----AGLPNKSIAYDLDISPRTVEVHRANVMAKMKA 61 (79)
T ss_dssp HHHHHHHHHHCHHHHHHHHHH-T----TTCCHHHHHHHTTSCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcC
Confidence 467888999999999999995 5 89999999999999999999999999999985
No 25
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=98.44 E-value=1.4e-07 Score=76.46 Aligned_cols=56 Identities=16% Similarity=0.226 Sum_probs=47.9
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 400 QHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 400 e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
..+..++..|+++|++||.++ . +|+|++|||+.||||.++|+.++.++++||+...
T Consensus 13 ~~~~~~~~~Lt~~e~~vl~l~-~----~g~s~~eIA~~l~is~~tV~~~l~r~~~kL~~~~ 68 (82)
T 1je8_A 13 ATTERDVNQLTPRERDILKLI-A----QGLPNKMIARRLDITESTVKVHVKHMLKKMKLKS 68 (82)
T ss_dssp ----CCGGGSCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTCSS
T ss_pred hHHHHHHccCCHHHHHHHHHH-H----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHcCCC
Confidence 346678889999999999995 5 7999999999999999999999999999997643
No 26
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=98.36 E-value=3.3e-07 Score=78.16 Aligned_cols=63 Identities=24% Similarity=0.209 Sum_probs=53.8
Q ss_pred HHHHHHHH-hhCCHHHHHHHHHHhhccC---CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 399 RQHVRNLL-TLLNPKERCIVRLRFGIED---GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 399 ~e~L~~aL-~~LperER~VL~LrY~L~~---ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
.+.+...+ ..|+++|+.+|.+||+|.+ +.++|++|||+.+|+|.++|+.+ +|++++|...++.
T Consensus 25 ~~~l~~~l~~lLT~~Er~~l~~R~~l~~~L~~ge~TQREIA~~lGiS~stISRi-~r~L~~l~~~~k~ 91 (101)
T 1jhg_A 25 NDLHLPLLNLMLTPDEREALGTRVRIIEELLRGEMSQRELKNELGAGIATITRG-SNSLKAAPVELRQ 91 (101)
T ss_dssp TTCHHHHHHHHSCHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHHCCCHHHHHHH-HHHHHHSCHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHCCChhhhhHH-HHHHHHccHHHHH
Confidence 34566666 5699999999999999975 45699999999999999999999 9999998876553
No 27
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=98.27 E-value=8.3e-07 Score=69.14 Aligned_cols=52 Identities=25% Similarity=0.242 Sum_probs=45.5
Q ss_pred HHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 402 VRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 402 L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
....+..|+++|+.|+.++ . +|+|.+|||+.||+|..+|++++.+++.+|+.
T Consensus 5 ~~~~~~~L~~~e~~il~~~-~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 56 (74)
T 1fse_A 5 EFQSKPLLTKREREVFELL-V----QDKTTKEIASELFISEKTVRNHISNAMQKLGV 56 (74)
T ss_dssp ---CCCCCCHHHHHHHHHH-T----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred cCCCCCCCCHHHHHHHHHH-H----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHCC
Confidence 4456788999999999995 5 79999999999999999999999999999975
No 28
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=98.06 E-value=5.9e-06 Score=68.41 Aligned_cols=49 Identities=20% Similarity=0.225 Sum_probs=42.8
Q ss_pred HHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 404 NLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 404 ~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
.....|+++|++||.+.+ +|+|.+|||+.||||..+|+..+.++++||.
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~-----~G~s~~eIA~~L~iS~~TV~~~~~~i~~Klg 73 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE-----KGFTNQEIADALHLSKRSIEYSLTSIFNKLN 73 (90)
T ss_dssp ----CCCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 456789999999999987 6999999999999999999999999999885
No 29
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=98.03 E-value=4e-06 Score=63.21 Aligned_cols=43 Identities=14% Similarity=0.227 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
++|++|+.+ +. +|+|.+|||+.||+|..+|+..+.++++||+.
T Consensus 1 ~re~~vl~l-~~----~g~s~~eIA~~l~is~~tV~~~~~~~~~kl~~ 43 (61)
T 2jpc_A 1 LRERQVLKL-ID----EGYTNHGISEKLHISIKTVETHRMNMMRKLQV 43 (61)
T ss_dssp CHHHHHHHH-HH----TSCCSHHHHHHTCSCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHH-HH----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHHCC
Confidence 478999999 66 89999999999999999999999999999875
No 30
>2o7g_A Probable RNA polymerase sigma-C factor; sigma factor, transcription regulation, -10 element recognit domain, transcription; 2.70A {Mycobacterium tuberculosis}
Probab=98.00 E-value=9.1e-06 Score=68.30 Aligned_cols=57 Identities=23% Similarity=0.214 Sum_probs=50.0
Q ss_pred HHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCc
Q 011992 318 DLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375 (473)
Q Consensus 318 eL~~~l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp 375 (473)
++...+..|+ .+++.|+..|.+.++++|.++ ++..+++|++||+|+.+|+++.+|++
T Consensus 13 ~l~~~~~~gd~~a~~~l~~~~~~~l~~~~~~~-~~~~~aeD~vQe~fl~~~~~~~~~~~ 70 (112)
T 2o7g_A 13 ALALSAAKGNGRALEAFIKATQQDVWRFVAYL-SDVGSADDLTQETFLRAIGAIPRFSA 70 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHH-SCHHHHHHHHHHHHHHHHHHGGGCCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHh-CCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 3444555555 899999999999999999999 99999999999999999999999875
No 31
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=97.97 E-value=9.8e-06 Score=68.39 Aligned_cols=47 Identities=21% Similarity=0.275 Sum_probs=43.3
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
..|+++|++||.+.+ +|+|.+|||+.||||..+|+..+.++++||.-
T Consensus 33 ~~Lt~re~~Vl~l~~-----~G~s~~EIA~~L~iS~~TV~~~l~ri~~KLgv 79 (99)
T 1p4w_A 33 KRLSPKESEVLRLFA-----EGFLVTEIAKKLNRSIKTISSQKKSAMMKLGV 79 (99)
T ss_dssp SSCCHHHHHHHHHHH-----HTCCHHHHHHHHTSCHHHHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHCC
Confidence 679999999999965 69999999999999999999999999999853
No 32
>1h3l_A RNA polymerase sigma factor; transcription, DNA-binding, transcription regulation; 2.37A {Streptomyces coelicolor A3} SCOP: a.177.1.1
Probab=97.89 E-value=7.1e-06 Score=65.87 Aligned_cols=51 Identities=18% Similarity=0.117 Sum_probs=47.6
Q ss_pred hcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCc
Q 011992 325 SGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKP 375 (473)
Q Consensus 325 ~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp 375 (473)
++..+++.|+..|.+.++++|.++.++..+++|++||+|+.+|+.++.|++
T Consensus 9 g~~~af~~l~~~~~~~l~~~~~~~~~~~~~aeD~vQe~fl~~~~~~~~~~~ 59 (87)
T 1h3l_A 9 ERSARFERDALEFLDQMYSAALRMTRNPADAEDLVQETYAKAYASFHQFRE 59 (87)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHGGGCCS
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 445899999999999999999999999999999999999999999999875
No 33
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=97.60 E-value=9e-05 Score=70.51 Aligned_cols=46 Identities=24% Similarity=0.327 Sum_probs=42.7
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|++|+.+.+ +|+|.+|||++||||+.||+.++.++++||.-
T Consensus 175 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~~ 220 (236)
T 2q0o_A 175 MLSPREMLCLVWAS-----KGKTASVTANLTGINARTVQHYLDKARAKLDA 220 (236)
T ss_dssp SCCHHHHHHHHHHH-----TTCCHHHHHHHHCCCHHHHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 59999999999964 79999999999999999999999999999863
No 34
>3ugo_A RNA polymerase sigma factor; protein-DNA complex, bacterial promoter opening, G-quartet, quadruplex, DNA binding; 2.10A {Thermus aquaticus} PDB: 3ugp_A 4gor_A 1ku2_A 3lev_A* 3les_A*
Probab=97.59 E-value=2e-06 Score=83.65 Aligned_cols=82 Identities=20% Similarity=0.252 Sum_probs=24.9
Q ss_pred hccCCCCCCcccccccccccccccccccCCCChhHHhhhc---ccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011992 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW---GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299 (473)
Q Consensus 223 ~~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~---~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~l 299 (473)
.+..+.+|.+|++|+.|+|+ +++.++ ++...+ .|... .+.+.+|..+...|...+
T Consensus 153 ~~fd~~~g~~F~tya~~~ir-----~~i~~~---ir~~~r~~r~p~~l--------------~e~i~~l~~~~~~L~~~~ 210 (245)
T 3ugo_A 153 EKFEYKRRFKFSTYATWWIR-----QAINRA---IADQARTIRIPVHM--------------VETINKLSRTARQLQQEL 210 (245)
T ss_dssp HHCCGGGCCCHHHHHHHHHH-----HHHHHH---HHHHTC----------------------------------------
T ss_pred HHcCcccCCcHHHHHHHHHH-----HHHHHH---HHHhcccccccHHH--------------HHHHHHHHHHHHHHHHHh
Confidence 45677889999999999999 998874 554433 33322 344567888888999999
Q ss_pred CCCCCHHHHHHHcC--CCHHHHHHHHhhc
Q 011992 300 GREPTLIEWAKAIG--LSCRDLKSELHSG 326 (473)
Q Consensus 300 GRePT~eEiA~~lG--ms~eeL~~~l~~g 326 (473)
|+.||.+|||+.|| ++.+.+...+...
T Consensus 211 ~~~ps~~EIAe~Lg~~is~~tVk~~l~~a 239 (245)
T 3ugo_A 211 GREPSYEEIAEAMGPGWDAKRVEETLKIA 239 (245)
T ss_dssp -----------------------------
T ss_pred CCCCCHHHHHHHHCCCCCHHHHHHHHHHH
Confidence 99999999999999 9999988776543
No 35
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=97.59 E-value=9e-05 Score=70.43 Aligned_cols=45 Identities=27% Similarity=0.383 Sum_probs=42.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|++|+.+.+ +|+|.+|||++||||+.||+..+.++++||.
T Consensus 173 ~Lt~~e~~vl~~~~-----~g~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 217 (234)
T 1l3l_A 173 WLDPKEATYLRWIA-----VGKTMEEIADVEGVKYNSVRVKLREAMKRFD 217 (234)
T ss_dssp CCCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhC
Confidence 59999999999964 7999999999999999999999999999985
No 36
>2a6h_F RNA polymerase sigma factor RPOD; RNA polymerase holoenzyme, streptolydigin, antibiotic, transcription regulation; HET: STD; 2.40A {Thermus thermophilus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1smy_F* 1zyr_F* 1iw7_F* 2a69_F* 2a6e_F 2a68_F* 2be5_F* 2cw0_F 3eql_F* 3dxj_F* 1l9u_H
Probab=97.43 E-value=3.2e-05 Score=80.83 Aligned_cols=82 Identities=20% Similarity=0.250 Sum_probs=62.2
Q ss_pred hccCCCCCCcccccccccccccccccccCCCChhHHhhhcccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Q 011992 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGRE 302 (473)
Q Consensus 223 ~~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~lGRe 302 (473)
.|..+.+|.+|+||+.|||+ ++|.++ ++...+..+ .| ..+ ...+.++.+++..+.+.+||+
T Consensus 225 ~kFd~~~g~~FstYa~~wIr-----~~i~~~---i~~~~r~ir-~p-------~~~---~~~~~~lrr~~~~l~~~~~r~ 285 (423)
T 2a6h_F 225 EKFEYKRRFKFSTYATWWIR-----QAINRA---IADQARTIR-IP-------VHM---VETINKLSRTARQLQQELGRE 285 (423)
T ss_dssp HHCCTTSCCCHHHHHHHHHH-----HHHHHH---HHHHSSSSC-CC-------HHH---HHHHHHHHHHHHHHHHHHSSC
T ss_pred HhcCcccCCCHHHHHHHHHH-----HHHHHH---HHHccceee-cc-------HHH---HHHHHHHHHHHHHHHHHhCCC
Confidence 35678889999999999999 887763 554443332 32 111 345566777888899999999
Q ss_pred CCHHHHHHHcC--CCHHHHHHHH
Q 011992 303 PTLIEWAKAIG--LSCRDLKSEL 323 (473)
Q Consensus 303 PT~eEiA~~lG--ms~eeL~~~l 323 (473)
|+.+|+|..+| ++.+++...+
T Consensus 286 p~~~eiA~~l~~~~~~~~v~~~~ 308 (423)
T 2a6h_F 286 PTYEEIAEAMGPGWDAKRVEETL 308 (423)
T ss_dssp CCHHHHHHHHCTTCCHHHHHHHH
T ss_pred CCHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999 9998887654
No 37
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=97.42 E-value=0.00017 Score=69.01 Aligned_cols=46 Identities=20% Similarity=0.307 Sum_probs=42.8
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
..|+++|++|+.+.. +|+|.+|||+.||||+.||+..+.++++||.
T Consensus 174 ~~Lt~re~~vl~~~~-----~G~s~~eIa~~l~is~~tV~~~~~~~~~kl~ 219 (237)
T 3szt_A 174 VRLTARETEMLKWTA-----VGKTYGEIGLILSIDQRTVKFHIVNAMRKLN 219 (237)
T ss_dssp CCCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 469999999999975 7999999999999999999999999999885
No 38
>1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1
Probab=97.42 E-value=5.2e-05 Score=79.74 Aligned_cols=80 Identities=20% Similarity=0.264 Sum_probs=61.9
Q ss_pred hccCCCCCCcccccccccccccccccccCCCChhHHhhhc---ccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011992 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW---GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299 (473)
Q Consensus 223 ~~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~---~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~l 299 (473)
.+..+.+|.+|.||++|||+ ++|.++ ++...+ .|.+. ...+.++.+++..+.+.+
T Consensus 240 ekFDp~kG~rFsTYA~~wIR-----~~I~~~---i~~~~R~irlp~~~--------------~~~l~~lrr~~r~l~~~l 297 (438)
T 1l9z_H 240 EKFEYKRRFKFSTYATWWIR-----QAINRA---IADQARTIRIPVHM--------------VETINKLSRTARQLQQEL 297 (438)
T ss_pred HhcCcccCCChHHHHHHHHH-----HHHHHH---HHHhcchhccchHH--------------HHHHHHHHHHHHHHHHHh
Confidence 35678889999999999999 888774 544333 33333 355667778888899999
Q ss_pred CCCCCHHHHHHHcC--CCHHHHHHHHh
Q 011992 300 GREPTLIEWAKAIG--LSCRDLKSELH 324 (473)
Q Consensus 300 GRePT~eEiA~~lG--ms~eeL~~~l~ 324 (473)
||+|+.+|||..+| ++.+++...+.
T Consensus 298 gr~pt~eeiA~~l~~~v~~e~V~~~~~ 324 (438)
T 1l9z_H 298 GREPSYEEIAEAMGPGWDAKRVEETLK 324 (438)
T ss_pred CCCCCHHHHHHHhCCCCCHHHHHHHHH
Confidence 99999999999999 99888876543
No 39
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=97.31 E-value=0.00026 Score=69.12 Aligned_cols=46 Identities=20% Similarity=0.239 Sum_probs=43.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|++|+.+.. +|+|.+|||++||||+.||+..+.++++||..
T Consensus 197 ~Lt~re~~vl~~~~-----~G~s~~eIA~~l~is~~TV~~~~~~~~~kl~~ 242 (265)
T 3qp6_A 197 PLSQREYDIFHWMS-----RGKTNWEIATILNISERTVKFHVANVIRKLNA 242 (265)
T ss_dssp CCCHHHHHHHHHHH-----TTCCHHHHHHHHTSCHHHHHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHhCC
Confidence 69999999999985 79999999999999999999999999999863
No 40
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=97.12 E-value=0.0007 Score=47.45 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=33.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++..+...|. +++|..|||+.||||..+|+.++.+
T Consensus 5 ~l~~~~~~~i~~~~~----~g~s~~~IA~~lgis~~Tv~~~~~~ 44 (51)
T 1tc3_C 5 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 44 (51)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHhh
Confidence 478888866666666 7899999999999999999998754
No 41
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=96.95 E-value=0.0018 Score=55.07 Aligned_cols=46 Identities=17% Similarity=0.147 Sum_probs=42.8
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
.+++.-..|..+||. +|+|..|||+.||||+.+|++++.+|...+.
T Consensus 18 ~~~~~~~~~A~lyYv----~g~tQ~eIA~~lGiSR~~VsrlL~~Ar~~~~ 63 (101)
T 2w7n_A 18 EVGQQTIEIARGVLV----DGKPQATFATSLGLTRGAVSQAVHRVWAAFE 63 (101)
T ss_dssp CCCHHHHHHHHHHHT----TCCCHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHHh
Confidence 588888899999999 9999999999999999999999999998764
No 42
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=96.66 E-value=0.0057 Score=55.32 Aligned_cols=50 Identities=14% Similarity=0.310 Sum_probs=44.2
Q ss_pred HHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 403 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 403 ~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
...+..|+++|++|+.+.. ++++.+|||+.||+|..+|+.+.+++++||.
T Consensus 137 ~~~~~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~~~~~i~~Kl~ 186 (208)
T 1yio_A 137 EQLFSSLTGREQQVLQLTI-----RGLMNKQIAGELGIAEVTVKVHRHNIMQKLN 186 (208)
T ss_dssp HHHHHTSCHHHHHHHHHHT-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHhcCHHHHHHHHHHH-----cCCcHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence 4455679999999998764 6899999999999999999999999999885
No 43
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=96.64 E-value=0.0012 Score=48.58 Aligned_cols=39 Identities=15% Similarity=0.204 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+++..+.|+.+ |. +++|..|||+.||||+.+|+.++.+|
T Consensus 17 ~~~~~~~i~~l-~~----~g~s~~eIA~~lgis~~TV~~~l~~a 55 (55)
T 2x48_A 17 EDDLVSVAHEL-AK----MGYTVQQIANALGVSERKVRRYLESC 55 (55)
T ss_dssp HHHHHHHHHHH-HH----TTCCHHHHHHHHTSCHHHHHHHHTC-
T ss_pred CHHHHHHHHHH-HH----cCCCHHHHHHHHCcCHHHHHHHHHhC
Confidence 34555666666 55 78999999999999999999987654
No 44
>3iyd_F RNA polymerase sigma factor RPOD; transcription, initiation, class I, activator, RNA polymeras holoenzyme, sigma70, open complex, CAP, CRP; HET: DNA CMP; 19.80A {Escherichia coli k-12}
Probab=96.64 E-value=2.7e-05 Score=84.90 Aligned_cols=81 Identities=17% Similarity=0.159 Sum_probs=63.8
Q ss_pred hccCCCCCCcccccccccccccccccccCCCChhHHhhhc---ccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 011992 223 RKVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLW---GPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQF 299 (473)
Q Consensus 223 ~~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~---~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~l 299 (473)
.+..+.+|.+|.||+.|||+ ++++++ +|+..+ .|.+. +..+.+++++...+.+.+
T Consensus 417 ~~fd~~~g~~Fstyl~~~ir-----n~i~~~---lr~~~r~~rip~~~--------------~~~~~k~~r~~~~l~~~~ 474 (613)
T 3iyd_F 417 DKFEYRRGYKFSTYATWWIR-----QAITRS---IADQARTIRIPVHM--------------IETINKLNRISRQMLQEM 474 (613)
T ss_dssp TSCCTTSSSCSTTTHHHHHH-----HHHHHH---TTTSCSSSCCCSHH--------------HHTTTTTTTTTTTTTTTT
T ss_pred HHcCccccCcHHHHHHHHHH-----HHHHHH---HHhcCcceeCcHHH--------------HHHHHHHHHHHHHHHHHh
Confidence 44577788999999999999 888873 655443 33333 344567788888999999
Q ss_pred CCCCCHHHHHHHcCCCHHHHHHHHhh
Q 011992 300 GREPTLIEWAKAIGLSCRDLKSELHS 325 (473)
Q Consensus 300 GRePT~eEiA~~lGms~eeL~~~l~~ 325 (473)
||+||.+|+|+.||++.+.+...+..
T Consensus 475 gr~pt~eela~~l~~~~~~v~~~~~~ 500 (613)
T 3iyd_F 475 GREPTPEELAERMLMPEDKIRKVLKI 500 (613)
T ss_dssp CSCCCTTTTTTTSSCCSSHHHHHHHH
T ss_pred CCCCCHHHHHHHhCCCHHHHHHHHHh
Confidence 99999999999999999888877643
No 45
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=96.35 E-value=0.0065 Score=55.33 Aligned_cols=46 Identities=20% Similarity=0.294 Sum_probs=42.0
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
..|+++|++|+.+.. +++|.+|||+.+++|..||+.+.++.++||.
T Consensus 153 ~~Lt~rE~~vl~~l~-----~g~s~~~Ia~~l~is~~TV~~hi~~i~~Kl~ 198 (215)
T 1a04_A 153 NQLTPRERDILKLIA-----QGLPNKMIARRLDITESTVKVHVKHMLKKMK 198 (215)
T ss_dssp GGSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHHHHH-----cCCCHHHHHHHHCCCHHHHHHHHHHHHHHcC
Confidence 359999999998776 6899999999999999999999999999985
No 46
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=96.06 E-value=0.009 Score=55.33 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=41.6
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
..|+++|++|+.+.. +++|.+|||+.|++|..||+..+++.++||.
T Consensus 148 ~~LT~rE~~vL~~l~-----~g~s~~eIa~~l~is~~TV~~hi~~l~~KL~ 193 (225)
T 3c3w_A 148 SGLTDQERTLLGLLS-----EGLTNKQIADRMFLAEKTVKNYVSRLLAKLG 193 (225)
T ss_dssp TTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-----CCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 459999999998765 6899999999999999999999999888874
No 47
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=95.58 E-value=0.0046 Score=57.19 Aligned_cols=80 Identities=28% Similarity=0.371 Sum_probs=64.3
Q ss_pred ccCCCCCCcccccccccccccccccccCCCChhHHhhhcccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011992 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 303 (473)
Q Consensus 224 ~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~lGReP 303 (473)
+..+.+|..|.+|+.++++ +.++| .+|+..+.++.. .+...++..+...+...+|+.|
T Consensus 59 ~~~~~~~~~f~~~l~~~~~-----~~~~d---~~r~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~~~ 116 (239)
T 1rp3_A 59 NLSTENPKRAEAYIKLRIK-----GAIYD---YLRSLDFGSRQV--------------REKERRIKEVVEKLKEKLGREP 116 (239)
T ss_dssp TCCCCCTHHHHHHHHHHHH-----HHHHH---HHHTSSTTCHHH--------------HHHHHHHHHHHHHHHHHHSSCC
T ss_pred HcCcccCCCHHHHHHHHHH-----HHHHH---HHHhcCccchHH--------------HHHHHHHHHHHHHHHHHhCCCC
Confidence 4456667899999999999 88888 477665544433 3556788899999999999999
Q ss_pred CHHHHHHHcCCCHHHHHHHHhh
Q 011992 304 TLIEWAKAIGLSCRDLKSELHS 325 (473)
Q Consensus 304 T~eEiA~~lGms~eeL~~~l~~ 325 (473)
+.+|+|+.+|++.+++..++..
T Consensus 117 ~~~~~a~~~~~~~~~~~~~~~~ 138 (239)
T 1rp3_A 117 TDEEVAKELGISTEELFKTLDK 138 (239)
T ss_dssp CHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHhCcCHHHHHHHHHH
Confidence 9999999999999888776543
No 48
>3p7n_A Sensor histidine kinase; LOV domain, light-activated transcription factor, DNA bindin; HET: FMN; 2.10A {Erythrobacter litoralis}
Probab=95.46 E-value=0.041 Score=51.18 Aligned_cols=56 Identities=21% Similarity=0.293 Sum_probs=49.6
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 397 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 397 el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
.......+.+..|+++++.++.+.. .+++.++||..||+|..+|+..+.++++||.
T Consensus 187 ~~~~~~~~~l~~L~~r~~~i~~~~~-----~g~~~~eia~~l~~s~~tv~~~l~~i~~kl~ 242 (258)
T 3p7n_A 187 ARRERAAEMLKTLSPRQLEVTTLVA-----SGLRNKEVAARLGLSEKTVKMHRGLVMEKLN 242 (258)
T ss_dssp HHHHHHHHHHTTSCHHHHHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHHHHHHC
Confidence 3456678889999999999999876 5899999999999999999999999988874
No 49
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=95.40 E-value=0.014 Score=53.70 Aligned_cols=46 Identities=17% Similarity=0.201 Sum_probs=41.2
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
..|+++|++|+.+.. +++|.+|||+.|++|..+|+..+++.++||.
T Consensus 158 ~~Lt~rE~~vL~~l~-----~g~s~~~Ia~~l~~s~~Tv~~~i~~l~~KL~ 203 (225)
T 3klo_A 158 AKLTKREQQIIKLLG-----SGASNIEIADKLFVSENTVKTHLHNVFKKIN 203 (225)
T ss_dssp HTSCHHHHHHHHHHT-----TTCCHHHHHHHTTCCHHHHHHHHHHHTTTSC
T ss_pred ccCCHHHHHHHHHHH-----cCCCHHHHHHHhCCCHHHHHHHHHHHHHHhC
Confidence 469999999998854 6899999999999999999999999888874
No 50
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=93.97 E-value=0.027 Score=39.68 Aligned_cols=33 Identities=21% Similarity=0.296 Sum_probs=26.4
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 414 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 414 R~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+.|+.+ +. ++.|..|||+.+|||..+|..++.+
T Consensus 12 ~~i~~l-~~----~g~s~~~ia~~lgvs~~Tv~r~l~~ 44 (52)
T 1jko_C 12 EQISRL-LE----KGHPRQQLAIIFGIGVSTLYRYFPA 44 (52)
T ss_dssp HHHHHH-HH----TTCCHHHHHHTTSCCHHHHHHHSCT
T ss_pred HHHHHH-HH----cCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 445555 44 6799999999999999999987654
No 51
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=93.94 E-value=0.071 Score=48.48 Aligned_cols=50 Identities=20% Similarity=0.121 Sum_probs=42.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC---CCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG---LSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LG---IS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|++|+.+... +.|+.+|.+|||+.++ +|..+|+..+++.++||..
T Consensus 145 ~Lt~rE~~vl~~l~~-~~~~~~s~~~Ia~~l~~~~~s~~tv~~~i~~l~~Kl~~ 197 (220)
T 1p2f_A 145 HLPKKEFEILLFLAE-NAGKVVTREKLLETFWEDPVSPRVVDTVIKRIRKAIED 197 (220)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHCSSCCCTHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHhCCCCCcchHHHHHHHHHHHHhc
Confidence 499999999876653 2235599999999999 9999999999999988863
No 52
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=93.74 E-value=0.074 Score=48.61 Aligned_cols=50 Identities=10% Similarity=0.034 Sum_probs=42.6
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|.+|+.+... +.|+.+|.+|||+.+ ++|..+|+.++++.++||..
T Consensus 156 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~Kl~~ 210 (230)
T 2oqr_A 156 TLPLKEFDLLEYLMR-NSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRSKIEA 210 (230)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHHHHCS
T ss_pred ecCHHHHHHHHHHHh-CCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHHHHhh
Confidence 499999999987664 234569999999999 99999999999999988853
No 53
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=93.66 E-value=0.11 Score=48.23 Aligned_cols=50 Identities=10% Similarity=-0.049 Sum_probs=41.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|.+|+.+... +.|+.+|.+|||+.+ ++|..+|+..+++.++||..
T Consensus 153 ~LT~rE~~vL~~l~~-~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr~KL~~ 207 (238)
T 2gwr_A 153 SLTPLEFDLLVALAR-KPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLRAKVEK 207 (238)
T ss_dssp CCCHHHHHHHHHHHH-STTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHHHHHCS
T ss_pred ccCHHHHHHHHHHHH-CCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhcc
Confidence 499999999987664 223559999999999 99999999999999999853
No 54
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=93.24 E-value=0.11 Score=41.40 Aligned_cols=41 Identities=15% Similarity=0.325 Sum_probs=30.0
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+.++.||.+-.....|++.|..|||+.||||..+|++++.+
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~ 54 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYS 54 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 44566765555433346899999999999999999886543
No 55
>3kor_A Possible Trp repressor; putative DNA-binding Trp repressor, TRPR like protein, struc genomics, transcription; 1.60A {Staphylococcus aureus}
Probab=92.52 E-value=0.12 Score=45.09 Aligned_cols=40 Identities=13% Similarity=0.180 Sum_probs=30.8
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..|..| .+|+.+-. +|+|+.|||+.+|+|..||.. .+++|
T Consensus 60 ~aLs~R-~eV~klL~-----~G~syreIA~~~g~S~aTIsR-v~r~L 99 (119)
T 3kor_A 60 QSLSQR-LQVAKMIK-----QGYTYATIEQESGASTATISR-VKRSL 99 (119)
T ss_dssp HHHHHH-HHHHHHHH-----HTCCHHHHHHHHCCCHHHHHH-HHHHH
T ss_pred HHHHHH-HHHHHHHH-----cCCCHHHHHHHHCCCHHHHHH-HHHHH
Confidence 456666 67777755 579999999999999999987 44444
No 56
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=92.51 E-value=0.21 Score=40.40 Aligned_cols=44 Identities=20% Similarity=0.466 Sum_probs=31.3
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+.++.||.+......|...|..|||+.||||+.+|++. |.+|.+
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~Lgvsr~tV~~~----L~~Le~ 53 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKLGTPKKEINRV----LYSLAK 53 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHH----HHHHHH
Confidence 34566665554433356899999999999999998774 555543
No 57
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=92.48 E-value=0.099 Score=47.48 Aligned_cols=50 Identities=12% Similarity=0.056 Sum_probs=42.4
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LG-----IS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|.+|+.+... +.|..+|.+|||+.++ +|..+|+..+++.++||..
T Consensus 151 ~Lt~rE~~vL~~l~~-~~~~~~s~~eIa~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 205 (225)
T 1kgs_A 151 DLTKKEYQILEYLVM-NKNRVVTKEELQEHLWSFDDEVFSDVLRSHIKNLRKKVDK 205 (225)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCEEHHHHHHHCC-----CHHHHHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCcccCHHHHHHHhcCCCCCCCcchHHHHHHHHHHHhhC
Confidence 499999999977653 2234599999999998 9999999999999999964
No 58
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=92.27 E-value=0.09 Score=48.02 Aligned_cols=50 Identities=10% Similarity=-0.023 Sum_probs=41.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LG-----IS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|.+|+.+... +.|..+|.+|||+.++ +|..+|+.++++.++||..
T Consensus 159 ~Lt~rE~~vL~~l~~-g~~~~~s~~~Ia~~l~~~~~~~s~~tv~~hi~~l~~Kl~~ 213 (233)
T 1ys7_A 159 DLTKREFDLLAVLAE-HKTAVLSRAQLLELVWGYDFAADTNVVDVFIGYLRRKLEA 213 (233)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHHCCCCC-CCCHHHHHHHHHHHHHHC
T ss_pred ccCHHHHHHHHHHHh-CCCCeEcHHHHHHHhcCcccCCCccCHHHHHHHHHHHhcc
Confidence 499999999987664 2234499999999998 9999999999999999974
No 59
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=92.12 E-value=0.19 Score=42.74 Aligned_cols=40 Identities=20% Similarity=0.124 Sum_probs=33.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++..|...+. .|.|..+||+.||+|..+|+.++.+
T Consensus 6 ~~s~~~r~~i~~~~~----~G~s~~~ia~~lgis~~Tv~r~~~~ 45 (141)
T 1u78_A 6 ALSDTERAQLDVMKL----LNVSLHEMSRKISRSRHCIRVYLKD 45 (141)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHc
Confidence 467777776666666 7899999999999999999998865
No 60
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=92.03 E-value=0.26 Score=40.70 Aligned_cols=42 Identities=12% Similarity=-0.018 Sum_probs=32.8
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.++..++.-+...|. ++.+..+||+.||||..+|+.++.+..
T Consensus 17 ~~s~~~r~~i~~~~~----~g~s~~~ia~~lgis~~Tv~~w~~~~~ 58 (128)
T 1pdn_C 17 PLPNNIRLKIVEMAA----DGIRPCVISRQLRVSHGCVSKILNRYQ 58 (128)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 366666655544455 789999999999999999999988753
No 61
>1zx4_A P1 PARB, plasmid partition PAR B protein, PARB; translation; HET: CIT; 2.98A {Enterobacteria phage P1} PDB: 2ntz_A
Probab=91.65 E-value=0.17 Score=47.58 Aligned_cols=36 Identities=19% Similarity=0.183 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 413 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 413 ER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
-..+..+ |. .|+|..|||+.||||+.+|++++..|.
T Consensus 14 G~ria~~-y~----~g~tQ~eIA~~lGiSr~~VSR~L~~A~ 49 (192)
T 1zx4_A 14 GLRLMRM-KN----DGMSQKDIAAKEGLSQAKVTRALQAAS 49 (192)
T ss_dssp HHHHHHH-HH----TTCCHHHHHHHHTCCHHHHHHHHHHHT
T ss_pred HHHHHHH-HH----cCCCHHHHHHHhCcCHHHHHHHHHHhc
Confidence 3444555 66 889999999999999999999988765
No 62
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=91.37 E-value=0.17 Score=47.61 Aligned_cols=50 Identities=24% Similarity=0.246 Sum_probs=42.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHH-----HHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGN-----IFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe-----~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|++||.+... +.|+.+|.+|||+ .++++..+|+..+++.++||..
T Consensus 182 ~LT~rE~evL~ll~~-g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~ 236 (249)
T 3q9s_A 182 RLSPKEFDILALLIR-QPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRD 236 (249)
T ss_dssp CCCHHHHHHHHHHHH-STTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhc
Confidence 499999999988774 3346699999999 5888999999999998888863
No 63
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=91.35 E-value=0.32 Score=45.31 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=43.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|.+|+.+... +.|+..|.+||++.+ +++..+|+.++++.++||..
T Consensus 176 ~LT~rE~~iL~~l~~-~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~KL~~ 230 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKIDT 230 (250)
T ss_dssp CCCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHHHHCC
T ss_pred ecCHHHHHHHHHHHH-CCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHHhhcC
Confidence 499999999887664 446889999999999 78999999999998888864
No 64
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=90.50 E-value=0.43 Score=41.45 Aligned_cols=42 Identities=12% Similarity=-0.002 Sum_probs=33.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.++..+|.-+...+. .|.+..+||+.+|||..+|+.++.+..
T Consensus 32 ~~s~e~r~~iv~~~~----~G~s~~~iA~~lgis~~TV~rw~~~~~ 73 (149)
T 1k78_A 32 PLPDVVRQRIVELAH----QGVRPCDISRQLRVSHGCVSKILGRYY 73 (149)
T ss_dssp CCCHHHHHHHHHHHH----TTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 466666665555555 789999999999999999999988754
No 65
>1l0o_C Sigma factor; bergerat fold, helix-turn-helix, protein binding; HET: ADP; 2.90A {Geobacillus stearothermophilus} SCOP: a.4.13.2
Probab=90.46 E-value=0.26 Score=45.06 Aligned_cols=80 Identities=23% Similarity=0.117 Sum_probs=36.9
Q ss_pred ccCCCCCCcccccccccccccccccccCCCChhHHhhhcccCccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Q 011992 224 KVSKPQVTNHETYNSRKASVKKKLSEGFDRNDPLRLFLWGPETRKLLTADEEFELIAQIQDLIRLEKEKSKLQSQFGREP 303 (473)
Q Consensus 224 ~~~~~~~~~f~tYa~~rIr~~~~~gai~D~~~~lR~~~~~pr~~~lLT~eEE~~L~~~iq~l~kle~a~~~L~~~lGReP 303 (473)
+..+.+|..|.+|+.+.++ +.++|. +|+..+ .+.| . .......+++.+...+....|+.|
T Consensus 72 ~~~~~~~~~f~~~l~~i~~-----~~~~d~---~r~~~~--~~~~----~------~~~~~~~~~~~~~~~~~~~~~~~~ 131 (243)
T 1l0o_C 72 KFDLSYDVKFSTYAVPMII-----GEIQRF---LRDDGT--VKVS----R------SLKEMGNKIRKAKDELSKTRGRAP 131 (243)
T ss_dssp ------------------------------------CCC--CTTH----H------HHHHHHHHHHHHHHHHHHHHTSCC
T ss_pred HcCcccCCCHHHHHHHHHH-----HHHHHH---HHhcCC--ccCc----H------HHHHHHHHHHHHHHHHHHHcCCCC
Confidence 3455567899999999999 999884 665331 1121 0 113445678888899999999999
Q ss_pred CHHHHHHHcCCCHHHHHHHH
Q 011992 304 TLIEWAKAIGLSCRDLKSEL 323 (473)
Q Consensus 304 T~eEiA~~lGms~eeL~~~l 323 (473)
+.++++..+|++.+++...+
T Consensus 132 ~~~~~~~~~~~~~~~~~~~~ 151 (243)
T 1l0o_C 132 TVTEIADHLGISPEDVVLAQ 151 (243)
T ss_dssp BHHHHHHHHTSCHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988776543
No 66
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=90.33 E-value=0.086 Score=48.03 Aligned_cols=50 Identities=4% Similarity=-0.050 Sum_probs=42.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC-----CCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG-----LSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LG-----IS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|++|+.+... +.|+.+|.+|||+.++ +|..+|+..+++.++||..
T Consensus 143 ~Lt~rE~~vL~~l~~-~~~~~~s~~~Ia~~l~~~~~~~s~~tv~~~i~~lr~KL~~ 197 (223)
T 2hqr_A 143 EVKGKPFEVLTHLAR-HRDQIVSKEQLLDAIWEEPEMVTPNVIEVAINQIRQKMDK 197 (223)
T ss_dssp CCCSTTTHHHHHHHH-TCSEEEEHHHHHHHHCCSSCSCGGGTHHHHHHHHHHHHHT
T ss_pred ecCHHHHHHHHHHHh-CCCCcCCHHHHHHHhcCCccCCCCcCHHHHHHHHHHHHhc
Confidence 499999999987663 1123399999999999 9999999999999999974
No 67
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=89.96 E-value=0.64 Score=37.23 Aligned_cols=44 Identities=20% Similarity=0.228 Sum_probs=33.3
Q ss_pred HhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 406 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 406 L~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
...|++.+..+|...+. .+.+.|..|||+.+|+|.++|+.++.+
T Consensus 16 ~~~l~~~~~~~l~~l~~--~~~~~t~~ela~~l~is~~tv~~~l~~ 59 (109)
T 2d1h_A 16 CYKITDTDVAVLLKMVE--IEKPITSEELADIFKLSKTTVENSLKK 59 (109)
T ss_dssp HHTCCHHHHHHHHHHHH--HCSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45788888877654431 126899999999999999999885543
No 68
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=89.19 E-value=0.7 Score=37.04 Aligned_cols=27 Identities=15% Similarity=0.139 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.+.+..+||+.+|||..+|+.++.+..
T Consensus 37 ~g~s~~~iA~~~gIs~sTl~rW~k~~~ 63 (87)
T 2elh_A 37 DGESKASVARDIGVPESTLRGWCKNED 63 (87)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 568999999999999999999986544
No 69
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=89.09 E-value=0.4 Score=47.38 Aligned_cols=37 Identities=14% Similarity=0.258 Sum_probs=31.6
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 414 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 414 R~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
..|..|||. ++++..|||+.||||+.+||..+..+.+
T Consensus 11 ~~ia~l~~~----~~~~~~ela~~l~vS~~tIrRdL~~l~~ 47 (315)
T 2w48_A 11 VKIAQLYYE----QDMTQAQIARELGIYRTTISRLLKRGRE 47 (315)
T ss_dssp HHHHHHHHT----SCCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 346678887 8999999999999999999998877644
No 70
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=88.88 E-value=0.47 Score=43.59 Aligned_cols=42 Identities=17% Similarity=0.235 Sum_probs=32.7
Q ss_pred hCCHHHHHHHHHHhhc--cCCCCCCHHHHHHHHCCCHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGI--EDGKPKSLSEVGNIFGLSKERVRQLE 449 (473)
Q Consensus 408 ~LperER~VL~LrY~L--~~ge~lTlkEIAe~LGIS~~rVrqi~ 449 (473)
.|+++|++|+...... ..|.++|.+|||+.||++..+|+.++
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 5899999998764321 23478999999999999988876644
No 71
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=88.59 E-value=1.2 Score=37.56 Aligned_cols=51 Identities=16% Similarity=0.222 Sum_probs=40.5
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhccCC---CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 399 RQHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 399 ~e~L~~aL~~LperER~VL~LrY~L~~g---e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
...|......|++.|+.|...... +. ..+|..|||+..|+|..+|....++
T Consensus 9 ~~~i~~~~~~ls~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~kk 62 (111)
T 2o3f_A 9 LAIIQSMXHXLPPSERKLADYILA--HPHXAIESTVNEISALANSSDAAVIRLCXS 62 (111)
T ss_dssp HHHHHHHGGGSCHHHHHHHHHHHH--CHHHHHTCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHhccCCHHHHHHHHHHHH--ChHHHHhcCHHHHHHHHCCCHHHHHHHHHH
Confidence 455777788999999999765442 11 3799999999999999999887654
No 72
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=88.55 E-value=0.54 Score=36.14 Aligned_cols=40 Identities=18% Similarity=0.201 Sum_probs=27.6
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+++..+.||.+--. ++..++..|||+.+|+|+++|.+++.
T Consensus 8 m~~~~~~IL~~L~~--~~~~~s~~eLA~~lglsr~tv~~~l~ 47 (67)
T 2heo_A 8 GDNLEQKILQVLSD--DGGPVAIFQLVKKCQVPKKTLNQVLY 47 (67)
T ss_dssp -CHHHHHHHHHHHH--HCSCEEHHHHHHHHCSCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHH--cCCCcCHHHHHHHHCcCHHHHHHHHH
Confidence 44455556554322 23579999999999999999987543
No 73
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=88.42 E-value=0.35 Score=39.39 Aligned_cols=25 Identities=8% Similarity=0.133 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.|..|||+.||||+++|++++.+
T Consensus 29 ~g~sa~eLAk~LgiSk~aVr~~L~~ 53 (82)
T 1oyi_A 29 EGATAAQLTRQLNMEKREVNKALYD 53 (82)
T ss_dssp STEEHHHHHHHSSSCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4499999999999999999997665
No 74
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=88.36 E-value=1.2 Score=40.34 Aligned_cols=54 Identities=11% Similarity=0.244 Sum_probs=41.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 398 MRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 398 l~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+...+...+..|++.+-.||...+... +++.|..+||+.+|++.++|+.++.+-
T Consensus 28 ~~~~~~~~~~~lt~~q~~vL~~L~~~~-~~~~t~~eLa~~l~is~~tvs~~l~~L 81 (189)
T 3nqo_A 28 IQIEGDKYFGILTSRQYMTILSILHLP-EEETTLNNIARKMGTSKQNINRLVANL 81 (189)
T ss_dssp HHHHHHHHHCSSCHHHHHHHHHHHHSC-GGGCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCHHHHHHHHHHHhcc-CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344556666779999999987666311 268999999999999999999865543
No 75
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=88.14 E-value=0.98 Score=39.33 Aligned_cols=42 Identities=12% Similarity=0.245 Sum_probs=32.9
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..|++.++.||.+-.. +...|..|||+.+|+|+.+|+.++.+
T Consensus 5 ~~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 46 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSE---NSRLTYRELADILNTTRQRIARRIDK 46 (151)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHTTSCHHHHHHHHHH
T ss_pred hhCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3588999988865433 25799999999999999999876544
No 76
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=88.10 E-value=1.8 Score=35.57 Aligned_cols=48 Identities=17% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHhhCCH-HHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 400 QHVRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 400 e~L~~aL~~Lpe-rER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..+...+..|.. ....||.+-.. .+.+..|||+.+|+|.++|+++++.
T Consensus 14 ~~~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~stvs~~L~~ 62 (106)
T 1r1u_A 14 ERVTEIFKALGDYNRIRIMELLSV----SEASVGHISHQLNLSQSNVSHQLKL 62 (106)
T ss_dssp HHHHHHHHHTCSHHHHHHHHHHHH----CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 345555555654 44455554333 5789999999999999999986543
No 77
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=87.97 E-value=0.89 Score=39.46 Aligned_cols=40 Identities=20% Similarity=0.167 Sum_probs=32.0
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|++.++.||.+-.. +...|..|||+.+|+|+++|+.++.+
T Consensus 3 ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 42 (144)
T 2cfx_A 3 LDQIDLNIIEELKK---DSRLSMRELGRKIKLSPPSVTERVRQ 42 (144)
T ss_dssp CCHHHHHHHHHHHH---CSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 78888888875443 25799999999999999999876544
No 78
>2glo_A Brinker CG9653-PA; protein-DNA complex, helix-turn-helix motif, transcription/DNA complex; NMR {Drosophila melanogaster}
Probab=87.83 E-value=1 Score=33.38 Aligned_cols=46 Identities=9% Similarity=0.179 Sum_probs=31.8
Q ss_pred CHHHHHHHHHHhhccCCCCCC----HHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 410 NPKERCIVRLRFGIEDGKPKS----LSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 410 perER~VL~LrY~L~~ge~lT----lkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
++..+.-+..++. .+.+ ..+||..+||+.++|+.+..+ ...++..+
T Consensus 7 s~efK~~~~~~~~----~g~s~~~~~~~vA~~~gIs~~tl~~W~~~-~~~~~~~~ 56 (59)
T 2glo_A 7 TPHFKLQVLESYR----NDNDCKGNQRATARKYNIHRRQIQKWLQC-ESNLRSSV 56 (59)
T ss_dssp CHHHHHHHHHHHH----HCTTTTTCHHHHHHHTTSCHHHHHHHHTT-HHHHHHHH
T ss_pred CHHHHHHHHHHHH----cCCCcchHHHHHHHHHCcCHHHHHHHHHH-HHHHHHHH
Confidence 4444443334443 4668 999999999999999999764 45555544
No 79
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=87.71 E-value=2.6 Score=33.83 Aligned_cols=37 Identities=30% Similarity=0.345 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 410 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 410 perER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++....||.+. . .+++..|||+.+|+|..+|++++..
T Consensus 30 ~~~r~~Il~~L-~----~~~~~~eLa~~l~is~~tv~~~L~~ 66 (96)
T 1y0u_A 30 NPVRRKILRML-D----KGRSEEEIMQTLSLSKKQLDYHLKV 66 (96)
T ss_dssp CHHHHHHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-c----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45555666554 4 6799999999999999999986543
No 80
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=87.67 E-value=2.3 Score=35.55 Aligned_cols=51 Identities=12% Similarity=0.086 Sum_probs=37.4
Q ss_pred HHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 401 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 401 ~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.+...+. .|++.+..||...+. .++.+.+..|||+.+|++.++|+.++.+-
T Consensus 22 ~~~~~~~~~~lt~~~~~iL~~l~~-~~~~~~~~~ela~~l~~~~~tvs~~l~~L 74 (141)
T 3bro_A 22 RFDIFAKKYDLTGTQMTIIDYLSR-NKNKEVLQRDLESEFSIKSSTATVLLQRM 74 (141)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHH-TTTSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCcchHHHHHHHH
Confidence 3444443 589999888876665 22237999999999999999998865543
No 81
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=87.56 E-value=1.4 Score=37.30 Aligned_cols=52 Identities=15% Similarity=0.211 Sum_probs=36.7
Q ss_pred HHHHHHHHhh----CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 399 RQHVRNLLTL----LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 399 ~e~L~~aL~~----LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
...+...+.. |++.+-.||..-+. ..+.|..|||+.+|++.++|+.++.+-.
T Consensus 21 ~~~~~~~l~~~~~~lt~~~~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 76 (142)
T 3ech_A 21 RTRIQSELDCQRLDLTPPDVHVLKLIDE---QRGLNLQDLGRQMCRDKALITRKIRELE 76 (142)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHH---TTTCCHHHHHHHHC---CHHHHHHHHHH
T ss_pred HHHHHHHHhhccCCCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCHHHHHHHHHHHH
Confidence 3445555554 89999988876654 2589999999999999999998766543
No 82
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=87.47 E-value=1.3 Score=37.75 Aligned_cols=46 Identities=7% Similarity=0.067 Sum_probs=35.2
Q ss_pred HHHhhCCHHHHHHHHHHhhccCCCC-CCHHHHHHHHCCCHHHHHHHHHH
Q 011992 404 NLLTLLNPKERCIVRLRFGIEDGKP-KSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 404 ~aL~~LperER~VL~LrY~L~~ge~-lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
...-.|++.+..|+..-.. .+.+ +|..|||+.+|++.++|...+.+
T Consensus 19 ~~~~gLt~~e~~il~~L~~--~~~~~~t~~eLa~~l~~s~sTV~r~L~~ 65 (123)
T 3r0a_A 19 KCALNLTKADLNVMKSFLN--EPDRWIDTDALSKSLKLDVSTVQRSVKK 65 (123)
T ss_dssp HHHHTCCHHHHHHHHHHHH--STTCCEEHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHHHHH--CCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4456799999998876553 2233 89999999999999999875443
No 83
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=87.21 E-value=1.1 Score=37.91 Aligned_cols=41 Identities=17% Similarity=0.135 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+..||..-+. .+.|..|||+.+|++.++|+.++.+-
T Consensus 35 ~lt~~~~~iL~~l~~----~~~t~~eLa~~l~~s~~tvs~~l~~L 75 (146)
T 3tgn_A 35 ALTNTQEHILMLLSE----ESLTNSELARRLNVSQAAVTKAIKSL 75 (146)
T ss_dssp CCCHHHHHHHHHHTT----CCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh----CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 478888888876654 33999999999999999999865543
No 84
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=87.03 E-value=1.4 Score=38.52 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=32.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++.||.+-.. +...|+.|||+.+|+|.++|+.++.+
T Consensus 4 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (151)
T 2cyy_A 4 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRK 44 (151)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHCSCHHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 478888888875432 25799999999999999999886554
No 85
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=86.83 E-value=1.4 Score=38.46 Aligned_cols=41 Identities=22% Similarity=0.408 Sum_probs=32.7
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++.||.+-.. +...|+.|||+.+|+|+++|+.++.+
T Consensus 5 ~ld~~d~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 45 (152)
T 2cg4_A 5 LIDNLDRGILEALMG---NARTAYAELAKQFGVSPETIHVRVEK 45 (152)
T ss_dssp CCCHHHHHHHHHHHH---CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 378888888875432 25799999999999999999886554
No 86
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=86.70 E-value=0.7 Score=37.36 Aligned_cols=40 Identities=15% Similarity=0.186 Sum_probs=29.8
Q ss_pred CCHHHHH-HHHHHhhccCCC-CCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 409 LNPKERC-IVRLRFGIEDGK-PKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 409 LperER~-VL~LrY~L~~ge-~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.++..+. |+.++.. . +.|..+||+.+|||.++|+.+..+.
T Consensus 6 ys~e~k~~~v~~~~~----~~g~s~~~ia~~~gIs~~tl~rW~~~~ 47 (97)
T 2jn6_A 6 YSEEFKRDAVALYEN----SDGASLQQIANDLGINRVTLKNWIIKY 47 (97)
T ss_dssp CCHHHHHHHHHHHTT----GGGSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH----cCCChHHHHHHHHCcCHHHHHHHHHHH
Confidence 4555554 4444443 3 7999999999999999999998653
No 87
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=86.59 E-value=1.2 Score=38.88 Aligned_cols=41 Identities=29% Similarity=0.293 Sum_probs=32.6
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++.||.+-.. +...|+.|||+.+|+|.++|+.++.+
T Consensus 4 ~ld~~~~~iL~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 44 (150)
T 2w25_A 4 ALDDIDRILVRELAA---DGRATLSELATRAGLSVSAVQSRVRR 44 (150)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888875432 25799999999999999999886544
No 88
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=86.56 E-value=1.1 Score=39.51 Aligned_cols=41 Identities=12% Similarity=0.042 Sum_probs=32.9
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++.||.+-.. +...|..|||+.+|+|.++|+.++.+
T Consensus 7 ~ld~~~~~il~~L~~---~~~~s~~ela~~lg~s~~tv~~~l~~ 47 (162)
T 2p5v_A 7 TLDKTDIKILQVLQE---NGRLTNVELSERVALSPSPCLRRLKQ 47 (162)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 488888888875443 24689999999999999999886554
No 89
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=86.53 E-value=2.4 Score=35.55 Aligned_cols=53 Identities=8% Similarity=0.113 Sum_probs=39.4
Q ss_pred HHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 399 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 399 ~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
...+...+. .|++.+-.|+..-+. .++++.|..|||+.+|++.++|+.++.+-
T Consensus 17 ~~~~~~~~~~~~lt~~~~~vL~~l~~-~~~~~~t~~ela~~l~~~~~tvs~~l~~L 71 (139)
T 3eco_A 17 KQKADQKLEQFDITNEQGHTLGYLYA-HQQDGLTQNDIAKALQRTGPTVSNLLRNL 71 (139)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHH-STTTCEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHhCCCcccHHHHHHHH
Confidence 344444443 589999998877665 22258999999999999999999866553
No 90
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=86.28 E-value=1.2 Score=36.31 Aligned_cols=38 Identities=24% Similarity=0.260 Sum_probs=29.0
Q ss_pred CHHHHHHH-HHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 410 NPKERCIV-RLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 410 perER~VL-~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++....|+ .+.-. ++.+..|||+.+|+|.++|+++++.
T Consensus 26 ~~~Rl~IL~~l~~~----~~~~~~ela~~l~is~stvs~hL~~ 64 (99)
T 2zkz_A 26 HPMRLKIVNELYKH----KALNVTQIIQILKLPQSTVSQHLCK 64 (99)
T ss_dssp SHHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHC----CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45556676 33333 5799999999999999999997664
No 91
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=86.22 E-value=1.1 Score=35.68 Aligned_cols=41 Identities=22% Similarity=0.191 Sum_probs=32.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.+..|+..... +.+.|..|||+.+|++.++|+.++.+
T Consensus 17 ~l~~~~~~il~~l~~---~~~~s~~ela~~l~is~~tv~~~l~~ 57 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLE---RGGMRVSEIARELDLSARFVRDRLKV 57 (109)
T ss_dssp CCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHH
Confidence 478888888765432 25799999999999999999886554
No 92
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=86.08 E-value=1.3 Score=37.80 Aligned_cols=40 Identities=15% Similarity=0.344 Sum_probs=30.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|++.++.||..... +...+..|||+.+|+|+.+|+..+.+
T Consensus 2 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~ 41 (141)
T 1i1g_A 2 IDERDKIILEILEK---DARTPFTEIAKKLGISETAVRKRVKA 41 (141)
T ss_dssp CCSHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 66777788764432 25689999999999999999885544
No 93
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=86.02 E-value=2.4 Score=35.31 Aligned_cols=50 Identities=12% Similarity=0.062 Sum_probs=37.5
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
..+...+. .|++.+..|+...+. +.+.+..|||+.+|++.++|+.++.+-
T Consensus 16 ~~~~~~~~~~~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~s~~tvs~~l~~L 67 (138)
T 3bpv_A 16 VFIGRELGHLNLTDAQVACLLRIHR---EPGIKQDELATFFHVDKGTIARTLRRL 67 (138)
T ss_dssp HHHHHHSGGGTCCHHHHHHHHHHHH---STTCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444443 589998888876554 367999999999999999998865543
No 94
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=85.98 E-value=1.2 Score=37.72 Aligned_cols=46 Identities=11% Similarity=0.094 Sum_probs=34.4
Q ss_pred hhCCHHHHHHHHHHhhc-cCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 407 ~~LperER~VL~LrY~L-~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
-.|++.+..+|...+.+ ..+.+.|..|||+.+|++.++|+.++.+-
T Consensus 9 ~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l~is~~tv~~~l~~L 55 (139)
T 2x4h_A 9 SNLSRREFSYLLTIKRYNDSGEGAKINRIAKDLKIAPSSVFEEVSHL 55 (139)
T ss_dssp --CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHhCCChHHHHHHHHHH
Confidence 46888888877655433 33478999999999999999999866553
No 95
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=85.88 E-value=2.5 Score=35.58 Aligned_cols=42 Identities=12% Similarity=0.149 Sum_probs=34.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. .+.|..|||+.+|++.++|+.++.+-.
T Consensus 34 ~l~~~~~~iL~~l~~----~~~~~~ela~~l~~s~~tvs~~l~~Le 75 (146)
T 2gxg_A 34 NLSYLDFLVLRATSD----GPKTMAYLANRYFVTQSAITASVDKLE 75 (146)
T ss_dssp TCCHHHHHHHHHHTT----SCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHhc----CCcCHHHHHHHhCCCchhHHHHHHHHH
Confidence 589998888876553 789999999999999999988665443
No 96
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=85.81 E-value=1.3 Score=38.37 Aligned_cols=40 Identities=13% Similarity=0.135 Sum_probs=30.2
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|++.++.||.+-.. +...+..|||+.+|+|+++|+.++.+
T Consensus 1 ld~~~~~il~~L~~---~~~~~~~ela~~lg~s~~tv~~~l~~ 40 (150)
T 2pn6_A 1 MDEIDLRILKILQY---NAKYSLDEIAREIRIPKATLSYRIKK 40 (150)
T ss_dssp CCHHHHHHHHHHTT---CTTSCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 45667777764332 25799999999999999999886544
No 97
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=85.79 E-value=1.4 Score=35.00 Aligned_cols=47 Identities=28% Similarity=0.289 Sum_probs=31.8
Q ss_pred HHHHHhhCC-HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 402 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~Lp-erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+...+..|. +.+..|+.+.. .+.+.|..|||+.+|+|.++|++++.+
T Consensus 14 ~~~~~~~l~~~~~~~il~~l~---~~~~~s~~ela~~l~is~~tvs~~l~~ 61 (99)
T 3cuo_A 14 AAALLKAMSHPKRLLILCMLS---GSPGTSAGELTRITGLSASATSQHLAR 61 (99)
T ss_dssp HHHHHHHHCSHHHHHHHHHHT---TCCSEEHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHH---hCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 334444443 45555654433 345899999999999999999886543
No 98
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=85.79 E-value=2.3 Score=35.48 Aligned_cols=42 Identities=7% Similarity=0.036 Sum_probs=34.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+..||...+. +.+.|..|||+.+|++.++|+.++.+-
T Consensus 28 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~is~~~vs~~l~~L 69 (142)
T 3bdd_A 28 GISLTRYSILQTLLK---DAPLHQLALQERLQIDRAAVTRHLKLL 69 (142)
T ss_dssp SSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 799999888876543 257999999999999999998865543
No 99
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=85.63 E-value=2.4 Score=34.24 Aligned_cols=47 Identities=23% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHhhCCHHHHH-HHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 400 QHVRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 400 e~L~~aL~~LperER~-VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
..+...+..|...-|. ||.+-.. .+.+..|||+.+|+|.++|++++.
T Consensus 11 ~~~~~~~~~l~~~~r~~Il~~L~~----~~~~~~ela~~l~is~~tvs~~L~ 58 (102)
T 3pqk_A 11 NEVANLLKTLSHPVRLMLVCTLVE----GEFSVGELEQQIGIGQPTLSQQLG 58 (102)
T ss_dssp HHHHHHHHHHCSHHHHHHHHHHHT----CCBCHHHHHHHHTCCTTHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 3455555555544444 4443322 469999999999999999988544
No 100
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=85.57 E-value=0.48 Score=41.72 Aligned_cols=40 Identities=13% Similarity=0.007 Sum_probs=31.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++..++..|...+. ++.+..+||+.||||..+|+.++.+
T Consensus 25 ~~s~e~r~~ii~l~~----~G~s~~~IA~~lgis~~TV~rwl~r 64 (159)
T 2k27_A 25 PLPEVVRQRIVDLAH----QGVRPCDISRQLRVSHGCVSKILGR 64 (159)
T ss_dssp SSCHHHHHHHHHHHH----HTCCHHHHHHHHTCCSHHHHHHHCC
T ss_pred CCCHHHHHHHHHHHH----cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 355665654444444 6899999999999999999998865
No 101
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=85.56 E-value=1.3 Score=39.27 Aligned_cols=40 Identities=15% Similarity=0.253 Sum_probs=31.1
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|++.++.||.+--. +...|+.|||+.+|+|+.+|+.++.+
T Consensus 1 lD~~d~~il~~L~~---~~~~s~~~la~~lg~s~~tv~~rl~~ 40 (162)
T 3i4p_A 1 MDRLDRKILRILQE---DSTLAVADLAKKVGLSTTPCWRRIQK 40 (162)
T ss_dssp CCHHHHHHHHHHTT---CSCSCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH---CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 46677888765432 25789999999999999999986554
No 102
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=85.54 E-value=3.2 Score=35.71 Aligned_cols=45 Identities=20% Similarity=0.053 Sum_probs=36.3
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
-.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.+
T Consensus 45 ~~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le~ 89 (162)
T 2fa5_A 45 YGMAIPEWRVITILAL---YPGSSASEVSDRTAMDKVAVSRAVARLLE 89 (162)
T ss_dssp HCCCHHHHHHHHHHHH---STTCCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3699999988876654 26899999999999999999987665443
No 103
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=84.99 E-value=1.7 Score=36.19 Aligned_cols=47 Identities=15% Similarity=0.232 Sum_probs=33.7
Q ss_pred HHHHHHhh-CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 401 HVRNLLTL-LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 401 ~L~~aL~~-LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+...+.. .++.+..||.+-.. .+.++.|||+.+|+|.++|++++++
T Consensus 21 ~~~~~~~~l~~~~~~~il~~L~~----~~~s~~ela~~l~is~stvsr~l~~ 68 (119)
T 2lkp_A 21 QVASTLQALATPSRLMILTQLRN----GPLPVTDLAEAIGMEQSAVSHQLRV 68 (119)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHH----CCCCHHHHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHH----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 34444444 34566667665553 5799999999999999999986654
No 104
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=84.87 E-value=1.8 Score=36.06 Aligned_cols=42 Identities=12% Similarity=0.176 Sum_probs=34.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+..||...+. +.+.|..|||+.+|++.++|+.++.+-
T Consensus 35 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~L 76 (140)
T 2nnn_A 35 GLTPTQWAALVRLGE---TGPCPQNQLGRLTAMDAATIKGVVERL 76 (140)
T ss_dssp CCCHHHHHHHHHHHH---HSSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 799999888876543 158999999999999999998865543
No 105
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=84.68 E-value=2.7 Score=33.62 Aligned_cols=46 Identities=20% Similarity=0.208 Sum_probs=31.0
Q ss_pred HHHHHHhhCCHHHH-HHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 401 HVRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 401 ~L~~aL~~LperER-~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
.+...+..|...-| .|+.+-. + .+.+..|||+.+|+|.++|++.+.
T Consensus 12 ~~~~~~~~l~~~~r~~Il~~L~---~-~~~~~~ela~~l~is~~tvs~~L~ 58 (98)
T 3jth_A 12 KAVVLLKAMANERRLQILCMLH---N-QELSVGELCAKLQLSQSALSQHLA 58 (98)
T ss_dssp HHHHHHHHHCSHHHHHHHHHTT---T-SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHh---c-CCCCHHHHHHHHCcCHHHHHHHHH
Confidence 45555555554444 4443322 2 578999999999999999987543
No 106
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=84.44 E-value=3 Score=35.05 Aligned_cols=63 Identities=16% Similarity=0.220 Sum_probs=48.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhhccCC---CCCCHHHHHHHHCCCHHHHHHHHHH----HHHHHHHHhcc
Q 011992 398 MRQHVRNLLTLLNPKERCIVRLRFGIEDG---KPKSLSEVGNIFGLSKERVRQLESR----ALYRLKQSLGG 462 (473)
Q Consensus 398 l~e~L~~aL~~LperER~VL~LrY~L~~g---e~lTlkEIAe~LGIS~~rVrqi~~R----AL~KLR~~L~~ 462 (473)
+...|...+..|++.|+.|...... +. ..+|..|||+..|+|..+|....++ +..-+|..+..
T Consensus 4 i~~~I~~~~~~lt~~e~~ia~yil~--~~~~~~~~si~elA~~~~vS~aTv~Rf~kkLGf~gf~efk~~l~~ 73 (107)
T 3iwf_A 4 ILYKIDNQYPYFTKNEKKIAQFILN--YPHKVVNMTSQEIANQLETSSTSIIRLSKKVTPGGFNELKTRLSK 73 (107)
T ss_dssp HHHHHHHHGGGSCHHHHHHHHHHHH--CHHHHTTCCHHHHHHHHTSCHHHHHHHHHHHSTTHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHh--CHHHHHHCCHHHHHHHHCCCHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 3456788889999999999764332 21 5799999999999999999887765 56666665554
No 107
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=84.43 E-value=3.1 Score=35.59 Aligned_cols=44 Identities=14% Similarity=0.219 Sum_probs=35.6
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..|++.+-.||...+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 37 ~~lt~~q~~iL~~l~~---~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWE---ENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp TTCCHHHHHHHHHHHH---SSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3589999888876653 2689999999999999999998666543
No 108
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=84.24 E-value=1.7 Score=39.30 Aligned_cols=41 Identities=17% Similarity=0.326 Sum_probs=33.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.++.||.+-.. +...++.|||+.+|+|+.+|+.++.+
T Consensus 24 ~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~rl~~ 64 (171)
T 2e1c_A 24 PLDEIDKKIIKILQN---DGKAPLREISKITGLAESTIHERIRK 64 (171)
T ss_dssp CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 588999988875443 24799999999999999999886544
No 109
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=84.06 E-value=3.2 Score=35.49 Aligned_cols=43 Identities=7% Similarity=0.083 Sum_probs=34.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.
T Consensus 40 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~i~~~tvs~~l~~Le 82 (155)
T 3cdh_A 40 GLRVPEWRVLACLVD---NDAMMITRLAKLSLMEQSRMTRIVDQMD 82 (155)
T ss_dssp TCCHHHHHHHHHHSS---CSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 589998888876543 3579999999999999999998665543
No 110
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=83.91 E-value=2.4 Score=34.55 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=32.0
Q ss_pred HHHHHhhCC-HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 402 VRNLLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~Lp-erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+...+..|. +....||.+... .+.+..|||+.+|+|.++|+.++.+
T Consensus 11 ~~~~~~~l~~~~r~~IL~~L~~----~~~~~~ela~~l~is~~tv~~~l~~ 57 (114)
T 2oqg_A 11 LASVFAALSDETRWEILTELGR----ADQSASSLATRLPVSRQAIAKHLNA 57 (114)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH----SCBCHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHhCChHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444455554 445556554332 5799999999999999999886554
No 111
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=83.81 E-value=3.1 Score=35.46 Aligned_cols=43 Identities=5% Similarity=0.060 Sum_probs=34.8
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. ..+.|..|||+.+|++.++|+.++.+-.
T Consensus 38 ~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~Le 80 (154)
T 2qww_A 38 GLTIQQLAMINVIYS---TPGISVADLTKRLIITGSSAAANVDGLI 80 (154)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 599999888876654 2569999999999999999988665543
No 112
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=83.81 E-value=1.1 Score=37.07 Aligned_cols=38 Identities=18% Similarity=0.209 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+|...|+.+... .+.|..+||+.+|||..||+..+..-
T Consensus 7 ~R~~~I~~~l~~----~~~ti~dlA~~~gVS~~TVsR~L~~~ 44 (93)
T 2l0k_A 7 ERTIKIGKYIVE----TKKTVRVIAKEFGVSKSTVHKDLTER 44 (93)
T ss_dssp HHHHHHHHHHHH----HCCCHHHHHHHHTSCHHHHHHHHTTH
T ss_pred HHHHHHHHHHHH----cCCCHHHHHHHHCCCHHHHHHHHcCC
Confidence 345555555444 45899999999999999999988753
No 113
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=83.68 E-value=0.9 Score=34.95 Aligned_cols=23 Identities=17% Similarity=0.312 Sum_probs=21.1
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHH
Q 011992 429 KSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 429 lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+|++|||+.+|||..+|+.+++.
T Consensus 1 ~T~~diA~~aGVS~sTVSrvLng 23 (65)
T 1uxc_A 1 MKLDEIARLAGVSRTTASYVING 23 (65)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHHT
T ss_pred CCHHHHHHHHCcCHHHHHHHHcC
Confidence 47899999999999999999874
No 114
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=83.67 E-value=3.1 Score=35.24 Aligned_cols=50 Identities=18% Similarity=0.205 Sum_probs=37.3
Q ss_pred HHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 401 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 401 ~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.+...+. .|++.+..||...+. ..+.+..|||+.+|++.++|+.++.+-.
T Consensus 30 ~~~~~~~~~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 30 RGREILTNYPITPPQFVALQWLLE---EGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHTTSSSCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3444443 589988888866553 2579999999999999999998665543
No 115
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=83.50 E-value=3.2 Score=34.78 Aligned_cols=42 Identities=21% Similarity=0.260 Sum_probs=33.7
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.+..|+.+.+. .+ .+.|..|||+.+|++.++|+.++.+
T Consensus 23 gl~~~~~~il~~L~~-~~-~~~t~~ela~~l~~~~stvs~~l~~ 64 (152)
T 1ku9_A 23 GLNKSVGAVYAILYL-SD-KPLTISDIMEELKISKGNVSMSLKK 64 (152)
T ss_dssp TCCHHHHHHHHHHHH-CS-SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCChhHHHHHHHHHH-cC-CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 589999888876642 22 5799999999999999999886544
No 116
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=83.49 E-value=1.9 Score=38.91 Aligned_cols=42 Identities=17% Similarity=0.175 Sum_probs=32.8
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..|++.++.||.+-.. +...|..|||+.+|+|+++|+.++.+
T Consensus 13 ~~ld~~d~~IL~~L~~---~~~~s~~eLA~~lglS~~tv~~~l~~ 54 (171)
T 2ia0_A 13 IHLDDLDRNILRLLKK---DARLTISELSEQLKKPESTIHFRIKK 54 (171)
T ss_dssp -CCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4588888888775443 24689999999999999999886554
No 117
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=83.45 E-value=3.5 Score=34.33 Aligned_cols=53 Identities=6% Similarity=0.038 Sum_probs=39.2
Q ss_pred HHHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 398 MRQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 398 l~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
+...+...+. .|++.+..|+...+. +.+.+..+||+.+|++.++|+.++.+-.
T Consensus 19 ~~~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 19 KDRLLNEYLSPLDITAAQFKVLCSIRC---AACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHTTTTSCHHHHHHHHHHHH---HSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhcCCCHHHHHHHHHHHh---cCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 3444555553 589998888876553 2578999999999999999998665543
No 118
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=82.92 E-value=3.3 Score=35.17 Aligned_cols=46 Identities=13% Similarity=0.282 Sum_probs=31.3
Q ss_pred HHHHHhhC-CHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 402 VRNLLTLL-NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~L-perER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+...+..| .+....||.+-.. .+.+..|||+.+|+|.++|++++++
T Consensus 36 ~~~~~kaL~~~~rl~IL~~L~~----~~~s~~ela~~lgis~stvs~~L~~ 82 (122)
T 1r1t_A 36 LAEFFAVLADPNRLRLLSLLAR----SELCVGDLAQAIGVSESAVSHQLRS 82 (122)
T ss_dssp HHHHHHHHCCHHHHHHHHHHTT----CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33334334 4445556654432 5789999999999999999986544
No 119
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=82.92 E-value=2.3 Score=36.64 Aligned_cols=43 Identities=5% Similarity=-0.031 Sum_probs=35.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.
T Consensus 49 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 91 (162)
T 3cjn_A 49 GLSTAKMRALAILSA---KDGLPIGTLGIFAVVEQSTLSRALDGLQ 91 (162)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCChhHHHHHHHHHH
Confidence 589999988876654 2578999999999999999988665543
No 120
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=82.88 E-value=2 Score=34.45 Aligned_cols=42 Identities=14% Similarity=0.148 Sum_probs=30.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 397 LMRQHVRNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 397 el~e~L~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+..+.+.++|..|++ |+..|..+||+.||+++..|.+.+.+-
T Consensus 12 ~~~~~v~~~i~~L~~--------------~~~~Ta~~IAkkLg~sK~~vNr~LY~L 53 (75)
T 1sfu_A 12 EIFSLVKKEVLSLNT--------------NDYTTAISLSNRLKINKKKINQQLYKL 53 (75)
T ss_dssp HHHHHHHHHHHTSCT--------------TCEECHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC--------------CcchHHHHHHHHHCCCHHHHHHHHHHH
Confidence 345556666666664 356899999999999998887766543
No 121
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=82.87 E-value=2.4 Score=35.81 Aligned_cols=51 Identities=12% Similarity=0.061 Sum_probs=37.8
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..+...+. .|++.+-.||..-+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 23 ~~~~~~~~~~glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L~ 75 (140)
T 3hsr_A 23 KKYTNYLKEYDLTYTGYIVLMAIEN---DEKLNIKKLGERVFLDSGTLTPLLKKLE 75 (140)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHSCT---TCEEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 33444443 589988888765543 3689999999999999999998665543
No 122
>3frw_A Putative Trp repressor protein; structural genomics, APC21159, PSI-2, P structure initiative; 2.05A {Ruminococcus obeum atcc 29174} PDB: 3g1c_A
Probab=82.76 E-value=2.2 Score=36.41 Aligned_cols=40 Identities=13% Similarity=0.228 Sum_probs=29.2
Q ss_pred CCHHHHHHHHHHhhccC--CCCCCHHHHHHHHCCCHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQL 448 (473)
Q Consensus 409 LperER~VL~LrY~L~~--ge~lTlkEIAe~LGIS~~rVrqi 448 (473)
+++.|+.-|..|+.+-. .+|+|+.||++.+|+|..+|...
T Consensus 37 ~T~~E~~alaqR~~Ia~lL~~G~SyreIa~~tG~StaTIsRv 78 (107)
T 3frw_A 37 CTINELLSLSQRFEVAKMLTDKRTYLDISEKTGASTATISRV 78 (107)
T ss_dssp SCHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHCccHHHHHHH
Confidence 67777666554443321 16799999999999999999763
No 123
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=82.75 E-value=4.3 Score=34.51 Aligned_cols=52 Identities=15% Similarity=0.153 Sum_probs=38.1
Q ss_pred HHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 399 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 399 ~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
...+...+. .|++.+-.||...+. .+++.|..|||+.+|++.++|+.++.+-
T Consensus 25 ~~~~~~~l~~~glt~~q~~vL~~l~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~L 78 (150)
T 3fm5_A 25 LGAVNKALVPTGLRVRSYSVLVLACE--QAEGVNQRGVAATMGLDPSQIVGLVDEL 78 (150)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHH--STTCCCSHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHh--CCCCcCHHHHHHHHCCCHhHHHHHHHHH
Confidence 334444443 589999888876543 2356899999999999999999876553
No 124
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=82.62 E-value=2.4 Score=36.17 Aligned_cols=44 Identities=11% Similarity=0.095 Sum_probs=35.0
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..|++.+..||...+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 33 ~~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le 76 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKK---HGSLKVSEIAERMEVKPSAVTLMADRLE 76 (155)
T ss_dssp TTCCHHHHHHHHHHHH---HSEEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3699999888876553 2578999999999999999988665433
No 125
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=82.54 E-value=3.4 Score=34.87 Aligned_cols=43 Identities=9% Similarity=0.029 Sum_probs=34.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
.|++.+-.||...+. +.+ |..|||+.+|++.++|+.++.+-.+
T Consensus 34 ~lt~~~~~iL~~l~~---~~~-~~~~la~~l~~~~~tvs~~l~~Le~ 76 (144)
T 3f3x_A 34 NLSYLDFSILKATSE---EPR-SMVYLANRYFVTQSAITAAVDKLEA 76 (144)
T ss_dssp SCCHHHHHHHHHHHH---SCE-EHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCC-CHHHHHHHHCCChhHHHHHHHHHHH
Confidence 689999988876664 133 9999999999999999986665443
No 126
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=82.38 E-value=3.8 Score=34.73 Aligned_cols=42 Identities=7% Similarity=0.097 Sum_probs=34.1
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+..|+...+. +.+.+..|||+.+|++.++|+.++.+-
T Consensus 37 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~~vs~~l~~L 78 (152)
T 3bj6_A 37 GVTVGQRAILEGLSL---TPGATAPQLGAALQMKRQYISRILQEV 78 (152)
T ss_dssp TCCHHHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589998888876554 257999999999999999998865543
No 127
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=82.33 E-value=1.5 Score=35.27 Aligned_cols=45 Identities=11% Similarity=0.060 Sum_probs=33.6
Q ss_pred hCCHHHHHHHHHHhhcc-CCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIE-DGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~-~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|+.++..||...+.-. +|...+..|||+.+|++.++|..++.+-
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~L 54 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKF 54 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHH
Confidence 47888888876554321 2234899999999999999999876543
No 128
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=82.19 E-value=2.6 Score=36.93 Aligned_cols=42 Identities=10% Similarity=0.163 Sum_probs=34.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|+..+..||...+. ..+.|..|||+.+|++.++|+.++.+-
T Consensus 42 ~lt~~~~~iL~~L~~---~~~~t~~eLa~~l~is~~tvs~~l~~L 83 (168)
T 2nyx_A 42 NITIPQFRTLVILSN---HGPINLATLATLLGVQPSATGRMVDRL 83 (168)
T ss_dssp SCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 699999888876543 157999999999999999999866543
No 129
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=82.17 E-value=1.6 Score=36.08 Aligned_cols=46 Identities=11% Similarity=0.057 Sum_probs=30.6
Q ss_pred HHHHHhhCCHH-HHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 402 VRNLLTLLNPK-ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~Lper-ER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+...+..|... ...||.+... .+.+..|||+.+|+|.++|++.+++
T Consensus 15 ~~~~~~al~~~~r~~IL~~L~~----~~~s~~eLa~~lgis~stvs~~L~~ 61 (108)
T 2kko_A 15 VARVGKALANGRRLQILDLLAQ----GERAVEAIATATGMNLTTASANLQA 61 (108)
T ss_dssp HHHHHHHHTTSTTHHHHHHHTT----CCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHc----CCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 44444444433 3445544332 5789999999999999999885543
No 130
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=81.95 E-value=2.7 Score=35.48 Aligned_cols=50 Identities=10% Similarity=0.072 Sum_probs=37.5
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
..+...+. .|++.+..||...+. ..+.|..|||+.+|++.++|..++.+-
T Consensus 24 ~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~L 75 (143)
T 3oop_A 24 LFLMRSIASYDVTPEQWSVLEGIEA---NEPISQKEIALWTKKDTPTVNRIVDVL 75 (143)
T ss_dssp HHHHHHTTTSSSCHHHHHHHHHHHH---HSSEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHhhhCCCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCHhhHHHHHHHH
Confidence 34444443 489999888876553 168999999999999999999866553
No 131
>3qbm_A TETR transcriptional regulator; DNA/RNA-binding three-helical bundle, structural genomics, J center for structural genomics, JCSG; HET: MSE PGE; 1.80A {Chloroflexus aurantiacus}
Probab=81.83 E-value=21 Score=30.49 Aligned_cols=78 Identities=12% Similarity=-0.029 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~l 364 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+.
T Consensus 11 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (199)
T 3qbm_A 11 RVVAQAAALFNVSGYAGTAISDIMAATGLEKGGIYRHFESKEQLALAAFDYAAEKVRERFAVGLAGHKHTVDTIIAFLD 89 (199)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcCcCCHHHHHHHhCCCccHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHH
Confidence 56666667777788 5589999999999999999988877667777777777666665555544444455555544433
No 132
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=81.69 E-value=2.6 Score=35.72 Aligned_cols=44 Identities=18% Similarity=0.198 Sum_probs=35.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
.|++.+..||...+. ..+.|..|||+.+|++.++|+.++.+-.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~~~~tvs~~l~~Le~ 80 (148)
T 3nrv_A 37 GIGMTEWRIISVLSS---ASDCSVQKISDILGLDKAAVSRTVKKLEE 80 (148)
T ss_dssp TCCHHHHHHHHHHHH---SSSBCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc---CCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 589998888876554 25899999999999999999987665443
No 133
>1zug_A Phage 434 CRO protein; gene regulating protein, transcription regulation; NMR {Phage 434} SCOP: a.35.1.2 PDB: 2cro_A 3cro_L*
Probab=81.60 E-value=1.8 Score=31.90 Aligned_cols=25 Identities=12% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+.+++.
T Consensus 15 ~glsq~~lA~~~gis~~~i~~~e~g 39 (71)
T 1zug_A 15 LKMTQTELATKAGVKQQSIQLIEAG 39 (71)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 6899999999999999999998864
No 134
>1r69_A Repressor protein CI; gene regulating protein; 2.00A {Phage 434} SCOP: a.35.1.2 PDB: 1pra_A 1per_L 1rpe_L* 2or1_L* 1r63_A 2r63_A 1sq8_A
Probab=81.48 E-value=1.9 Score=31.64 Aligned_cols=25 Identities=20% Similarity=0.304 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~i~~~e~g 37 (69)
T 1r69_A 13 LGLNQAELAQKVGTTQQSIEQLENG 37 (69)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999998764
No 135
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=81.34 E-value=3.5 Score=34.53 Aligned_cols=50 Identities=10% Similarity=0.078 Sum_probs=36.4
Q ss_pred HHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 401 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 401 ~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.+...+. .|++.+..||...+. .+.+.|..|||+.+|++.++|+.++.+-
T Consensus 25 ~~~~~~~~~~l~~~~~~iL~~l~~--~~~~~t~~~la~~l~~s~~~vs~~l~~L 76 (146)
T 2fbh_A 25 ELDRRLSHLGLSQARWLVLLHLAR--HRDSPTQRELAQSVGVEGPTLARLLDGL 76 (146)
T ss_dssp HHHHHTGGGCCTTTHHHHHHHHHH--CSSCCBHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHHH
Confidence 3444443 488888888766522 2368999999999999999998865543
No 136
>3ppb_A Putative TETR family transcription regulator; DNA-binding, helix-turn-helix motif, HTH motif, DNA/RNA-BIND helical bundle fold; HET: MSE PG4; 2.10A {Shewanella loihica}
Probab=81.27 E-value=13 Score=31.57 Aligned_cols=82 Identities=11% Similarity=0.036 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.| ...|..+||+.+|++...+......-+..+..++..+...+............+..+.+...+..
T Consensus 13 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 92 (195)
T 3ppb_A 13 AILETALQLFVSQGFHGTSTATIAREAGVATGTLFHHFPSKEQLLEQLFLGVKQEFADAIQASVSSRGDLKQDAEQLWFA 92 (195)
T ss_dssp HHHHHHHHHHHHTCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTCCCCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhcccCHHHHHHHHHHH
Confidence 45566667777788 67899999999999999999988877777777777777666666555555555666555554444
Q ss_pred HHH
Q 011992 366 LMK 368 (473)
Q Consensus 366 L~k 368 (473)
++.
T Consensus 93 ~~~ 95 (195)
T 3ppb_A 93 ALT 95 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 433
No 137
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=81.10 E-value=1.8 Score=31.45 Aligned_cols=25 Identities=24% Similarity=0.405 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|+|.++|+.+++.
T Consensus 13 ~g~s~~~lA~~~gis~~~i~~~e~g 37 (66)
T 2xi8_A 13 KKISQSELAALLEVSRQTINGIEKN 37 (66)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999874
No 138
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=81.07 E-value=11 Score=28.75 Aligned_cols=56 Identities=16% Similarity=0.173 Sum_probs=35.6
Q ss_pred HHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 292 ~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
...+....| -|..|+|+.+|++...+.++..+.... ....+..+|.-+ +++.+|+.
T Consensus 17 l~~~r~~~g--ltq~~lA~~~gvs~~~is~~e~g~~~~-------~~~~~~~ia~~l---~v~~~~l~ 72 (80)
T 3kz3_A 17 WEKKKNELG--LSYESVADKMGMGQSAVAALFNGINAL-------NAYNAALLAKIL---KVSVEEFS 72 (80)
T ss_dssp HHHHHHHHT--CCHHHHHHHTTSCHHHHHHHHTTSSCC-------CHHHHHHHHHHH---TSCGGGTC
T ss_pred HHHHHHHcC--CCHHHHHHHhCcCHHHHHHHHcCCCCC-------CHHHHHHHHHHh---CCCHHHHh
Confidence 333444455 488999999999999999888775421 123455566555 34444443
No 139
>3qq6_A HTH-type transcriptional regulator SINR; helix-turn-helix motif, biofilm, repressor, SINI; 1.90A {Bacillus subtilis}
Probab=80.99 E-value=1.9 Score=33.36 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+++++.
T Consensus 22 ~gltq~elA~~~gis~~~is~~E~G 46 (78)
T 3qq6_A 22 KGYSLSELAEKAGVAKSYLSSIERN 46 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999999875
No 140
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=80.94 E-value=0.99 Score=41.27 Aligned_cols=44 Identities=9% Similarity=0.098 Sum_probs=31.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCC--CHHHHHHHHCCC-HHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPK--SLSEVGNIFGLS-KERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~l--TlkEIAe~LGIS-~~rVrqi~~R 451 (473)
.|+++++.++.....+-...++ |.+|+|+.+|++ .++|++++.+
T Consensus 3 ~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~lgiss~~tv~~~~~~ 49 (202)
T 1jhf_A 3 ALTARQQEVFDLIRDHISQTGMPPTRAEIAQRLGFRSPNAAEEHLKA 49 (202)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHTTCSSHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHhCCCChHHHHHHHHH
Confidence 5888888776432211111356 999999999999 9999998763
No 141
>2a6c_A Helix-turn-helix motif; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: CIT; 1.90A {Nitrosomonas europaea} SCOP: a.35.1.13
Probab=80.92 E-value=1.9 Score=33.68 Aligned_cols=25 Identities=16% Similarity=0.288 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||.++|+++++.
T Consensus 30 ~glsq~elA~~~gis~~~is~~e~g 54 (83)
T 2a6c_A 30 SGLTQFKAAELLGVTQPRVSDLMRG 54 (83)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999864
No 142
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=80.87 E-value=3.7 Score=31.98 Aligned_cols=25 Identities=8% Similarity=0.088 Sum_probs=21.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.|..|||+.+|+|+.+|+..+..
T Consensus 13 ~~~s~~eLa~~lgvs~~tv~r~L~~ 37 (81)
T 2htj_A 13 NGGKTAEIAEALAVTDYQARYYLLL 37 (81)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 4699999999999999999875543
No 143
>3dcf_A Transcriptional regulator of the TETR/ACRR family; YP_290855.1, structural genomics, joint center for structural genomics, JCSG; 2.50A {Thermobifida fusca YX}
Probab=80.85 E-value=14 Score=32.08 Aligned_cols=84 Identities=12% Similarity=0.074 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.+|..+.| ...|..+||+..|++...+.......+..+..++......+............+..+-+...+..
T Consensus 35 ~Il~aa~~l~~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 114 (218)
T 3dcf_A 35 QIIKVATELFREKGYYATSLDDIADRIGFTKPAIYYYFKSKEDVLFAIVNSIVDEALERFHAIAAGPGSPGERIHALLVE 114 (218)
T ss_dssp HHHHHHHHHHHHTCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 56666777777888 45899999999999999999988877777777777766666555555444455555555444444
Q ss_pred HHHHh
Q 011992 366 LMKSV 370 (473)
Q Consensus 366 L~kAi 370 (473)
++..+
T Consensus 115 ~~~~~ 119 (218)
T 3dcf_A 115 HTRTI 119 (218)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 144
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=80.82 E-value=3.5 Score=35.13 Aligned_cols=42 Identities=10% Similarity=0.165 Sum_probs=34.4
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||..... .+.|..|||+.+|++.++|+.++.+-.
T Consensus 35 ~lt~~q~~iL~~l~~----~~~t~~eLa~~l~~~~~~vs~~l~~Le 76 (151)
T 3kp7_A 35 GISAEQSHVLNMLSI----EALTVGQITEKQGVNKAAVSRRVKKLL 76 (151)
T ss_dssp TCCHHHHHHHHHHHH----SCBCHHHHHHHHCSCSSHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHc----CCcCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 589998888765533 789999999999999999998665543
No 145
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=80.81 E-value=2.6 Score=38.86 Aligned_cols=39 Identities=21% Similarity=0.347 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+++.++.|+.+-.. .+.|..|||+.+|+|.++|+.++.+
T Consensus 18 ~d~~~~~IL~~L~~----~~~s~~eLA~~lglS~stv~~~l~~ 56 (192)
T 1uly_A 18 LEDTRRKILKLLRN----KEMTISQLSEILGKTPQTIYHHIEK 56 (192)
T ss_dssp HSHHHHHHHHHHTT----CCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 57788888766543 5799999999999999999986654
No 146
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=80.76 E-value=4.2 Score=35.22 Aligned_cols=50 Identities=4% Similarity=-0.037 Sum_probs=37.8
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
..+...+. .|++.+-.||...+. ..+.|..|||+.+|++.++|..++.+-
T Consensus 33 ~~~~~~l~~~glt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 84 (162)
T 3k0l_A 33 KYLTEHLSALEISLPQFTALSVLAA---KPNLSNAKLAERSFIKPQSANKILQDL 84 (162)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH---CTTCCHHHHHHHHTSCGGGHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 33444443 599999888876553 258999999999999999999866553
No 147
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=80.74 E-value=3.6 Score=34.72 Aligned_cols=39 Identities=10% Similarity=0.151 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 410 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 410 perER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++....||.+-.. ..+.+..|||+.+|+|.++|++++..
T Consensus 41 ~~~rl~IL~~L~~---~~~~s~~eLa~~l~is~stvs~~L~~ 79 (122)
T 1u2w_A 41 DENRAKITYALCQ---DEELCVCDIANILGVTIANASHHLRT 79 (122)
T ss_dssp SHHHHHHHHHHHH---SSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH---CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4445556654431 15799999999999999999987654
No 148
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=80.69 E-value=4.7 Score=33.98 Aligned_cols=42 Identities=14% Similarity=0.122 Sum_probs=33.8
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+-.||..-+. ..+.|..|||+.+|++.++|+.++.+-
T Consensus 28 ~lt~~q~~iL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~L 69 (145)
T 3g3z_A 28 DLNYNLFAVLYTLAT---EGSRTQKHIGEKWSLPKQTVSGVCKTL 69 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCSBCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999888876543 157999999999999999999866553
No 149
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=80.64 E-value=2.8 Score=36.14 Aligned_cols=52 Identities=2% Similarity=0.012 Sum_probs=38.6
Q ss_pred HHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 399 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 399 ~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
...+...+. .|++.+..||...+. ..+.|..|||+.+|++.++|+.++.+-.
T Consensus 36 ~~~~~~~l~~~~lt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~tvs~~l~~Le 89 (159)
T 3s2w_A 36 QIYIGKKIEPYGIGSGQFPFLMRLYR---EDGINQESLSDYLKIDKGTTARAIQKLV 89 (159)
T ss_dssp HHHHHHHHGGGTCCTTTHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 334444453 488888888876554 2679999999999999999998766543
No 150
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=80.40 E-value=2.5 Score=35.51 Aligned_cols=43 Identities=23% Similarity=0.289 Sum_probs=34.4
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~s~~tvs~~l~~L~ 72 (145)
T 2a61_A 30 GITPAQFDILQKIYF---EGPKRPGELSVLLGVAKSTVTGLVKRLE 72 (145)
T ss_dssp TCCHHHHHHHHHHHH---HCCBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 589998888876553 2579999999999999999988665533
No 151
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=80.33 E-value=2.2 Score=31.76 Aligned_cols=25 Identities=24% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+.+++.
T Consensus 25 ~g~s~~~lA~~~gis~~~i~~~e~g 49 (74)
T 1y7y_A 25 KGLSQETLAFLSGLDRSYVGGVERG 49 (74)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999999864
No 152
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=79.89 E-value=2.5 Score=36.14 Aligned_cols=43 Identities=19% Similarity=0.209 Sum_probs=34.4
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.
T Consensus 44 ~l~~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~tvs~~l~~Le 86 (153)
T 2pex_A 44 DLTYPQYLVMLVLWE---TDERSVSEIGERLYLDSATLTPLLKRLQ 86 (153)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCcCHHHHHHHhCCCcccHHHHHHHHH
Confidence 588888888766553 2579999999999999999998665543
No 153
>2b5a_A C.BCLI; helix-turn-helix motif, gene regulation; 1.54A {Bacillus caldolyticus} SCOP: a.35.1.3
Probab=79.87 E-value=2.3 Score=32.00 Aligned_cols=25 Identities=24% Similarity=0.392 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+.+++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (77)
T 2b5a_A 22 KGVSQEELADLAGLHRTYISEVERG 46 (77)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 6899999999999999999999864
No 154
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=79.68 E-value=2.6 Score=31.70 Aligned_cols=25 Identities=16% Similarity=0.316 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 19 ~g~sq~~lA~~~gis~~~i~~~e~g 43 (78)
T 3b7h_A 19 QNLTINRVATLAGLNQSTVNAMFEG 43 (78)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHCT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999864
No 155
>2wiu_B HTH-type transcriptional regulator HIPB; transferase transcription complex, serine kinase, DNA-bindin mercury derivative, repressor; 2.35A {Escherichia coli} PDB: 3dnv_B* 3dnw_B* 3hzi_B*
Probab=79.66 E-value=2.7 Score=32.50 Aligned_cols=25 Identities=16% Similarity=0.330 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~i~~~e~g 48 (88)
T 2wiu_B 24 NGWTQSELAKKIGIKQATISNFENN 48 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 6899999999999999999999874
No 156
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=79.47 E-value=3.9 Score=35.29 Aligned_cols=53 Identities=13% Similarity=0.032 Sum_probs=39.1
Q ss_pred HHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 399 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 399 ~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
...+...+. .|+..+-.||.+.+. ..+.++|..|||+.+|++.++|..++.+-
T Consensus 21 ~~~~~~~l~~~gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~~~~~tvs~~v~~L 75 (147)
T 4b8x_A 21 LGEVDAVVKPYGLTFARYEALVLLTF-SKSGELPMSKIGERLMVHPTSVTNTVDRL 75 (147)
T ss_dssp HHHHHHHHGGGTCCHHHHHHHHHHHT-SGGGEEEHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH-CCCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 344555554 589999888876553 22246899999999999999999876553
No 157
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=79.40 E-value=3.2 Score=34.84 Aligned_cols=51 Identities=4% Similarity=-0.064 Sum_probs=37.2
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..+...+. .|++.+..||...+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 16 ~~~~~~~~~~~lt~~~~~iL~~l~~---~~~~t~~~la~~l~~s~~~vs~~l~~Le 68 (144)
T 1lj9_A 16 SISNIEFKELSLTRGQYLYLVRVCE---NPGIIQEKIAELIKVDRTTAARAIKRLE 68 (144)
T ss_dssp HHHHHHTGGGTCTTTHHHHHHHHHH---STTEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHH---CcCcCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 34444443 588888888766554 2578999999999999999988665543
No 158
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=79.17 E-value=2.9 Score=35.16 Aligned_cols=45 Identities=16% Similarity=0.211 Sum_probs=32.3
Q ss_pred hCCHHHHH-HHHHHhhccCCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERC-IVRLRFGIEDGKPK-SLSEVGNIFGLSKERVRQLESRALYRL 456 (473)
Q Consensus 408 ~LperER~-VL~LrY~L~~ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KL 456 (473)
.++..++. |+.+++. .+. +..+||+.+||+.++|+.+++..-..+
T Consensus 7 ~~t~e~K~~iv~~~~~----~g~~~~~~~A~~~gvs~stl~~~~~~~~~~~ 53 (131)
T 1hlv_A 7 QLTFREKSRIIQEVEE----NPDLRKGEIARRFNIPPSTLSTILKNKRAIL 53 (131)
T ss_dssp CCCHHHHHHHHHHHHH----CTTSCHHHHHHHHTCCHHHHHHHHHTHHHHH
T ss_pred eCCHHHHHHHHHHHHH----CCCCcHHHHHHHhCCCHHHHHHHHhchhhhc
Confidence 46677664 5555544 444 455999999999999999987755444
No 159
>2r1j_L Repressor protein C2; protein-DNA complex, helix-turn-helix, DNA-binding, transcription, transcription regulation; 1.53A {Enterobacteria phage P22} SCOP: a.35.1.2 PDB: 3jxb_C 3jxc_L 3jxd_L
Probab=79.11 E-value=1.9 Score=31.44 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 17 ~g~s~~~lA~~~gis~~~i~~~e~g 41 (68)
T 2r1j_L 17 LKIRQAALGKMVGVSNVAISQWERS 41 (68)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHcC
Confidence 5799999999999999999999864
No 160
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=79.10 E-value=1.8 Score=33.34 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+.+++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~e~g 50 (83)
T 3f6w_A 26 AGITQKELAARLGRPQSFVSKTENA 50 (83)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6799999999999999999999864
No 161
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=78.67 E-value=1.4 Score=35.19 Aligned_cols=24 Identities=25% Similarity=0.320 Sum_probs=21.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
...|..|||+.+|||..+|+..+.
T Consensus 23 ~~psv~EIa~~lgvS~~TVrr~L~ 46 (77)
T 2jt1_A 23 APVKTRDIADAAGLSIYQVRLYLE 46 (77)
T ss_dssp SCEEHHHHHHHHTCCHHHHHHHHH
T ss_pred CCcCHHHHHHHHCCCHHHHHHHHH
Confidence 678999999999999999887654
No 162
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=78.67 E-value=1.9 Score=32.90 Aligned_cols=25 Identities=16% Similarity=0.331 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+++|+.+|||.++|+++++.
T Consensus 14 ~glsq~~lA~~~gis~~~i~~~e~g 38 (77)
T 2k9q_A 14 LSLTAKSVAEEMGISRQQLCNIEQS 38 (77)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTC
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999864
No 163
>3eus_A DNA-binding protein; structural genomics, PSI2,MCSG, protein structure initiative, midwest center for structural genomic binding; 1.80A {Silicibacter pomeroyi}
Probab=78.67 E-value=2.3 Score=33.53 Aligned_cols=25 Identities=12% Similarity=0.205 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+.+++.
T Consensus 26 ~gltq~elA~~~gis~~~is~~E~G 50 (86)
T 3eus_A 26 AGLTQADLAERLDKPQSFVAKVETR 50 (86)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 7899999999999999999999864
No 164
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=78.49 E-value=2.3 Score=35.40 Aligned_cols=43 Identities=9% Similarity=0.043 Sum_probs=34.7
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. +.+.+..|||+.+|++.++|+.++.+-.
T Consensus 30 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L~ 72 (139)
T 3bja_A 30 DISYVQFGVIQVLAK---SGKVSMSKLIENMGCVPSNMTTMIQRMK 72 (139)
T ss_dssp TCCHHHHHHHHHHHH---SCSEEHHHHHHHCSSCCTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhHHHHHHHHHH
Confidence 589999888876654 2578999999999999999988665543
No 165
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=78.29 E-value=1.3 Score=36.41 Aligned_cols=44 Identities=20% Similarity=0.318 Sum_probs=31.8
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+.+....|+...+. .|+.+|..|||+.+|+|+++|++ ++.+|..
T Consensus 16 ~~~~~l~Il~~l~~--~g~~~s~~eLa~~lgvs~~tV~~----~L~~L~~ 59 (110)
T 1q1h_A 16 LGDDVIDVLRILLD--KGTEMTDEEIANQLNIKVNDVRK----KLNLLEE 59 (110)
T ss_dssp SCSTTHHHHHHHHH--HCSCBCHHHHHHTTTSCHHHHHH----HHHHHHH
T ss_pred cChHHHHHHHHHHH--cCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 44556666655432 34679999999999999999988 5555654
No 166
>3knw_A Putative transcriptional regulator (TETR/ACRR FAM; TETR-like protein, MCSG, PSI, structural genomics, protein S initiative; 2.45A {Acinetobacter SP}
Probab=78.28 E-value=22 Score=30.76 Aligned_cols=84 Identities=15% Similarity=0.004 Sum_probs=60.3
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHH
Q 011992 286 IRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364 (473)
Q Consensus 286 ~kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~l 364 (473)
.+|-.+-.++..+.| ...|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+.
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 96 (212)
T 3knw_A 17 QHILDSGFHLVLRKGFVGVGLQEILKTSGVPKGSFYHYFESKEAFGCELLKHYISDYQIRLNQLWTTETSARDKLMNYLQ 96 (212)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHSSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHH
Confidence 355666667777778 5799999999999999999999887777777777777766666665554445566665555554
Q ss_pred HHHHH
Q 011992 365 GLMKS 369 (473)
Q Consensus 365 gL~kA 369 (473)
.++..
T Consensus 97 ~~~~~ 101 (212)
T 3knw_A 97 CWVKD 101 (212)
T ss_dssp HHHHC
T ss_pred HHHHH
Confidence 44443
No 167
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=78.26 E-value=2.6 Score=32.81 Aligned_cols=43 Identities=12% Similarity=0.135 Sum_probs=34.4
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRA 452 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG----IS~~rVrqi~~RA 452 (473)
..|++.+..|+..-+. +.+.|..||++.++ ++.++|..++.+-
T Consensus 5 ~~lt~~e~~vL~~L~~---~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL 51 (82)
T 1p6r_A 5 PQISDAELEVMKVIWK---HSSINTNEVIKELSKTSTWSPKTIQTMLLRL 51 (82)
T ss_dssp CCCCHHHHHHHHHHHT---SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHc---CCCCCHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence 4689999998876654 25799999999997 7999998866553
No 168
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=78.17 E-value=2.2 Score=35.59 Aligned_cols=43 Identities=9% Similarity=0.033 Sum_probs=34.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..|+...+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 33 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~~s~~~vs~~l~~Le 75 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQ---QGEMESYQLANQACILRPSMTGVLARLE 75 (142)
T ss_dssp TCCHHHHHHHHHHHH---HCSEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHhHHHHHHHHHH
Confidence 589988888866543 2578999999999999999988665433
No 169
>3t76_A VANU, transcriptional regulator vanug; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE; 1.12A {Enterococcus faecalis} PDB: 3t75_A* 3tyr_A* 3tys_A*
Probab=78.07 E-value=2.6 Score=34.11 Aligned_cols=25 Identities=20% Similarity=0.295 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||+.+|+++++.
T Consensus 36 ~glTq~eLA~~~GiS~~tis~iE~G 60 (88)
T 3t76_A 36 RDMKKGELREAVGVSKSTFAKLGKN 60 (88)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999999874
No 170
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=78.00 E-value=2.6 Score=36.17 Aligned_cols=43 Identities=14% Similarity=0.096 Sum_probs=33.9
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..||...+. ..+.|..|||+.+|++.++|+.++.+-.
T Consensus 41 ~lt~~~~~iL~~l~~---~~~~t~~ela~~l~is~~tvs~~l~~Le 83 (154)
T 2eth_A 41 DMKTTELYAFLYVAL---FGPKKMKEIAEFLSTTKSNVTNVVDSLE 83 (154)
T ss_dssp HSBHHHHHHHHHHHH---HCCBCHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 488888888766543 1579999999999999999988665543
No 171
>3s8q_A R-M controller protein; protein-DNA complex, helix-turn-helix; HET: DNA; 2.10A {Enterobacter SP} SCOP: a.35.1.0 PDB: 3clc_A* 3ufd_A*
Probab=77.91 E-value=2.7 Score=32.24 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+++|+.+|||.++|+.+++.
T Consensus 23 ~glsq~~lA~~~gis~~~i~~~e~g 47 (82)
T 3s8q_A 23 KGMTQEDLAYKSNLDRTYISGIERN 47 (82)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 6899999999999999999999864
No 172
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=77.82 E-value=3.4 Score=30.31 Aligned_cols=25 Identities=8% Similarity=0.149 Sum_probs=22.9
Q ss_pred CCCCCHHHHHHHH-----CCCHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIF-----GLSKERVRQLES 450 (473)
Q Consensus 426 ge~lTlkEIAe~L-----GIS~~rVrqi~~ 450 (473)
+...|..||++.| +||..||+..+.
T Consensus 17 ~~~~t~~el~~~l~~~~~~vs~~Tv~R~L~ 46 (64)
T 2p5k_A 17 NEIETQDELVDMLKQDGYKVTQATVSRDIK 46 (64)
T ss_dssp SCCCSHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHhCCCcCHHHHHHHHH
Confidence 4689999999999 999999998777
No 173
>2ef8_A C.ECOT38IS, putative transcription factor; helix-turn-helix, DNA binding protein, transcription regulator; HET: CME; 1.95A {Enterobacteria phage P2}
Probab=77.70 E-value=2.8 Score=32.03 Aligned_cols=25 Identities=32% Similarity=0.412 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||.++|+++++.
T Consensus 22 ~glsq~~lA~~~gis~~~i~~~e~g 46 (84)
T 2ef8_A 22 ASLSQSELAIFLGLSQSDISKIESF 46 (84)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 6899999999999999999999874
No 174
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=77.57 E-value=3 Score=35.80 Aligned_cols=44 Identities=11% Similarity=0.059 Sum_probs=35.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+-.||...+. .+.+.+..|||+.+|++.++|..++.+-.
T Consensus 44 ~l~~~~~~iL~~L~~--~~~~~~~~ela~~l~i~~~tvs~~l~~Le 87 (160)
T 3boq_A 44 GLSLAKFDAMAQLAR--NPDGLSMGKLSGALKVTNGNVSGLVNRLI 87 (160)
T ss_dssp SCCHHHHHHHHHHHH--CTTCEEHHHHHHHCSSCCSCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCChhhHHHHHHHHH
Confidence 699999998876642 12689999999999999999988665544
No 175
>2ewt_A BLDD, putative DNA-binding protein; the DNA-binding domain of BLDD; 1.81A {Streptomyces coelicolor}
Probab=77.52 E-value=3.3 Score=30.58 Aligned_cols=25 Identities=20% Similarity=0.012 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFG--LSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LG--IS~~rVrqi~~R 451 (473)
.++|.+|+|+.+| +|.++|+++++.
T Consensus 20 ~glsq~~lA~~~g~~is~~~i~~~e~g 46 (71)
T 2ewt_A 20 QGLSLHGVEEKSQGRWKAVVVGSYERG 46 (71)
T ss_dssp TTCCHHHHHHHTTTSSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCCcCCHHHHHHHHCC
Confidence 6899999999999 999999999874
No 176
>1adr_A P22 C2 repressor; transcription regulation; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=77.34 E-value=2.2 Score=31.87 Aligned_cols=25 Identities=20% Similarity=0.312 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 17 ~gls~~~lA~~~gis~~~i~~~e~g 41 (76)
T 1adr_A 17 LKIRQAALGKMVGVSNVAISQWERS 41 (76)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 177
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=77.21 E-value=1.5 Score=34.46 Aligned_cols=25 Identities=24% Similarity=0.343 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|+|+.++|+.+|||.++|++++.+
T Consensus 21 ~glT~~~LA~~~Gvs~stls~~~~~ 45 (74)
T 1neq_A 21 RKLSLSALSRQFGYAPTTLANALER 45 (74)
T ss_dssp TSCCHHHHHHHHSSCHHHHHHTTTS
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999998765
No 178
>3qkx_A Uncharacterized HTH-type transcriptional regulato; structural genomics, joint center for structural genomics; HET: MSE; 2.35A {Haemophilus influenzae}
Probab=77.13 E-value=24 Score=29.78 Aligned_cols=78 Identities=6% Similarity=0.094 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhH
Q 011992 286 IRLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGS 363 (473)
Q Consensus 286 ~kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~ 363 (473)
.+|-.+-.+|..+.|= .-|..+||+..|++...+.......+.-+..++......+............+..+.+...+
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 89 (188)
T 3qkx_A 11 EQIFSATDRLMAREGLNQLSMLKLAKEANVAAGTIYLYFKNKDELLEQFAHRVFSMFMATLEKDFDETKPFFEQYRQMW 89 (188)
T ss_dssp HHHHHHHHHHHHHSCSTTCCHHHHHHHHTCCHHHHHHHSSSHHHHHHHHHHHHHHHHHHHHHTTCCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHH
Confidence 3566677777778884 48999999999999999998887766666666666665555554444334445544444433
No 179
>3f1b_A TETR-like transcriptional regulator; APC5888, rhodococcus SP. RHA1, structural genomics, PS protein structure initiative; 2.40A {Rhodococcus}
Probab=77.04 E-value=20 Score=30.71 Aligned_cols=82 Identities=16% Similarity=0.076 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.+|..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+..
T Consensus 18 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 97 (203)
T 3f1b_A 18 QMLDAAVDVFSDRGFHETSMDAIAAKAEISKPMLYLYYGSKDELFAACIQREGLRFVEALAPAGDPGLSPREQLRRALEG 97 (203)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHGGGGCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHhCCchHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 46666677777888 57899999999999999999988776666666666666555544444444444555545444443
Q ss_pred HHH
Q 011992 366 LMK 368 (473)
Q Consensus 366 L~k 368 (473)
++.
T Consensus 98 ~~~ 100 (203)
T 3f1b_A 98 FLG 100 (203)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 180
>3fmy_A HTH-type transcriptional regulator MQSA (YGIT/B3021); helix-turn-helix, DNA-binding, transcription regulation, DNA binding protein; HET: MEQ; 1.40A {Escherichia coli k-12}
Probab=76.96 E-value=2 Score=32.84 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||..+|++++..
T Consensus 23 ~gltq~elA~~~gvs~~tis~~E~G 47 (73)
T 3fmy_A 23 LSLTQKEASEIFGGGVNAFSRYEKG 47 (73)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999864
No 181
>4ghj_A Probable transcriptional regulator; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.75A {Vibrio vulnificus}
Probab=76.94 E-value=2.7 Score=34.93 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||..+|+++++.
T Consensus 48 ~glTQ~eLA~~~gvs~~~is~~E~G 72 (101)
T 4ghj_A 48 RDLTQSEVAEIAGIARKTVLNAEKG 72 (101)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHCC
Confidence 7899999999999999999999864
No 182
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=76.91 E-value=2 Score=35.27 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=35.3
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
..|++.|..|+...+.. ++++.+.+|||+.+|++..+|..++.+-
T Consensus 16 ~~Lt~~q~~Vl~~I~~~-g~~gi~qkeLa~~~~l~~~tvt~iLk~L 60 (91)
T 2dk5_A 16 KGSDNQEKLVYQIIEDA-GNKGIWSRDVRYKSNLPLTEINKILKNL 60 (91)
T ss_dssp CCSCSSHHHHHHHHHHH-CTTCEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHc-CCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 46888888888777642 2368999999999999999988765543
No 183
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=76.64 E-value=2.6 Score=35.54 Aligned_cols=43 Identities=9% Similarity=-0.035 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
|++.+..||...+. .+.+.|..+||+.+|++.++|+.++.+-.
T Consensus 33 l~~~~~~iL~~l~~--~~~~~~~~~la~~l~i~~~~vs~~l~~Le 75 (147)
T 2hr3_A 33 VQFSQLVVLGAIDR--LGGDVTPSELAAAERMRSSNLAALLRELE 75 (147)
T ss_dssp HHHHHHHHHHHHHH--TTSCBCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHH--cCCCCCHHHHHHHhCCChhhHHHHHHHHH
Confidence 56666666654431 02689999999999999999998665543
No 184
>3bs3_A Putative DNA-binding protein; XRE-family, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.65A {Bacteroides fragilis}
Probab=76.41 E-value=2.9 Score=31.31 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||..+|+++++.
T Consensus 22 ~g~s~~~lA~~~gis~~~i~~~e~g 46 (76)
T 3bs3_A 22 KQRTNRWLAEQMGKSENTISRWCSN 46 (76)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999874
No 185
>1x57_A Endothelial differentiation-related factor 1; HMBF1alpha, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.35.1.12
Probab=76.37 E-value=3.8 Score=32.23 Aligned_cols=25 Identities=12% Similarity=0.121 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||..+|+.+++.
T Consensus 25 ~glsq~~lA~~~gis~~~is~~e~g 49 (91)
T 1x57_A 25 KGLTQKDLATKINEKPQVIADYESG 49 (91)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999873
No 186
>3hyi_A Protein DUF199/WHIA; laglidadg, homing endonuclease, helix-turn-helix, HTH, trans regulator; 2.34A {Thermotoga maritima} PDB: 3hyj_A
Probab=76.31 E-value=7.5 Score=38.61 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=42.4
Q ss_pred HHHHHHHH--hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 399 RQHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 399 ~e~L~~aL--~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.+.+.+.+ +.||+.-+++..+|.. ..+.|++|+|+.++||++.|..++.|..
T Consensus 232 I~~i~e~~Gl~~Lp~~L~e~a~lRl~---~pdaSL~ELge~l~isKSgVnhRlrKL~ 285 (295)
T 3hyi_A 232 IELIKENMGLENLPEDLRRVALVRLR---NKELSLRELGKKLNLTKSQIYSKLKRII 285 (295)
T ss_dssp HHHHHHHTCGGGSCHHHHHHHHHHHH---CTTSCHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHhcCcccCCHHHHHHHHHHHH---CccccHHHHHHHhCcCHHHHHHHHHHHH
Confidence 34444443 6899999999988876 4789999999999999999998876644
No 187
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=76.19 E-value=2.6 Score=33.28 Aligned_cols=39 Identities=13% Similarity=0.204 Sum_probs=28.5
Q ss_pred CHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 410 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 410 perER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++....||..-+. ..+.+..|||+.+|+|.++|+.++.+
T Consensus 15 ~~~~~~iL~~L~~---~~~~~~~ela~~l~is~~tvs~~l~~ 53 (100)
T 1ub9_A 15 NPVRLGIMIFLLP---RRKAPFSQIQKVLDLTPGNLDSHIRV 53 (100)
T ss_dssp SHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred ChHHHHHHHHHHh---cCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 4555566654331 15799999999999999999986554
No 188
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=76.17 E-value=3.2 Score=36.23 Aligned_cols=53 Identities=9% Similarity=0.051 Sum_probs=35.7
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..+...+. .|++.+-.||...+. .++.+.|..|||+.+|++.++|..++.+-.
T Consensus 33 ~~~~~~~~~~glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le 87 (168)
T 3u2r_A 33 AIEEEIFSQFELSAQQYNTLRLLRS-VHPEGMATLQIADRLISRAPDITRLIDRLD 87 (168)
T ss_dssp HHHHHHHHTTTCCHHHHHHHHHHHH-HTTSCEEHHHHHHHC---CTHHHHHHHHHH
T ss_pred HHHHHHhhhcCCCHHHHHHHHHHHh-cCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 33444443 589999888876554 113689999999999999999998665543
No 189
>3kz3_A Repressor protein CI; five helix bundle, DNA-binding, transcription, transcription regulation; 1.64A {Enterobacteria phage lambda}
Probab=76.10 E-value=2.3 Score=32.78 Aligned_cols=25 Identities=20% Similarity=0.214 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||.++|+++++.
T Consensus 24 ~gltq~~lA~~~gvs~~~is~~e~g 48 (80)
T 3kz3_A 24 LGLSYESVADKMGMGQSAVAALFNG 48 (80)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 5799999999999999999999764
No 190
>3pas_A TETR family transcription regulator; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.90A {Marinobacter aquaeolei}
Probab=76.05 E-value=15 Score=31.20 Aligned_cols=82 Identities=18% Similarity=0.104 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+..
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (195)
T 3pas_A 12 AFLEATVREVADHGFSATSVGKIAKAAGLSPATLYIYYEDKEQLLLATFYYVSDQVIDAALDSFSRGKDLREGLRRQWHT 91 (195)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcChHhcCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45566666777777 55899999999999999999988877777777777776665555444444455555555444433
Q ss_pred HHH
Q 011992 366 LMK 368 (473)
Q Consensus 366 L~k 368 (473)
++.
T Consensus 92 ~~~ 94 (195)
T 3pas_A 92 LFR 94 (195)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 191
>2kpj_A SOS-response transcriptional repressor, LEXA; NESG, GFT, structural genomics, PSI-2, protein structure initiative; NMR {Eubacterium rectale atcc 33656}
Probab=76.04 E-value=3 Score=33.17 Aligned_cols=25 Identities=16% Similarity=0.203 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||.++|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~is~~e~G 45 (94)
T 2kpj_A 21 SEKTQLEIAKSIGVSPQTFNTWCKG 45 (94)
T ss_dssp SSSCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHhC
Confidence 7899999999999999999999864
No 192
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=75.91 E-value=15 Score=29.33 Aligned_cols=38 Identities=16% Similarity=0.163 Sum_probs=30.3
Q ss_pred HHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhc
Q 011992 289 EKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSG 326 (473)
Q Consensus 289 e~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g 326 (473)
+.+..-+.+.+.. .++..++|+.+|++...|.+.++..
T Consensus 5 ~~i~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 5 ELIQNIIEESYTDSQFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp HHHHHHHHHHTTCTTCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3444555667776 8999999999999999999888764
No 193
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=75.56 E-value=1.8 Score=35.90 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=35.4
Q ss_pred HhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 011992 406 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 453 (473)
Q Consensus 406 L~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG----IS~~rVrqi~~RAL 453 (473)
+..|++.+..|+...+. +.+.|..|||+.+| ++.++|..++.+-.
T Consensus 5 ~~~lt~~~~~vL~~l~~---~~~~t~~ela~~l~~~~~~s~~tv~~~l~~L~ 53 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWM---KKYASANNIIEEIQMQKDWSPKTIRTLITRLY 53 (123)
T ss_dssp CCCCCHHHHHHHHHHHH---HSSEEHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh---CCCcCHHHHHHHHhccCCCcHhhHHHHHHHHH
Confidence 35688888888875543 26899999999999 89999988766543
No 194
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=75.55 E-value=14 Score=29.88 Aligned_cols=39 Identities=10% Similarity=0.135 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhc
Q 011992 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326 (473)
Q Consensus 288 le~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g 326 (473)
+.++..-+.+.++..++.+++|+.+|++...|.+.++..
T Consensus 7 i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 7 IQNVLSYITEHFSEGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 445566677778889999999999999999999888654
No 195
>3f0c_A TETR-molecule A, transcriptional regulator; MCSG,PSI, SAD, structural genomics, protein structure initiative; 2.96A {Cytophaga hutchinsonii}
Probab=75.42 E-value=40 Score=29.22 Aligned_cols=84 Identities=15% Similarity=0.134 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.|= ..|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+..
T Consensus 15 ~Il~aA~~lf~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (216)
T 3f0c_A 15 LIINAAQKRFAHYGLCKTTMNEIASDVGMGKASLYYYFPDKETLFEAVIKKEQNVFFDEMDKILNSGIDATALLKKYVKL 94 (216)
T ss_dssp HHHHHHHHHHHHHCSSSCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHH
Confidence 455566667777785 5899999999999999999988877777777777776666555555444444666666554444
Q ss_pred HHHHh
Q 011992 366 LMKSV 370 (473)
Q Consensus 366 L~kAi 370 (473)
.+..+
T Consensus 95 ~~~~~ 99 (216)
T 3f0c_A 95 RSLHF 99 (216)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 196
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=75.25 E-value=2.1 Score=36.46 Aligned_cols=44 Identities=9% Similarity=0.223 Sum_probs=29.7
Q ss_pred CCHHHHHHHHHHhhc-cCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGI-EDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 409 LperER~VL~LrY~L-~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
|++.+..+|...+.+ ..+.+.+..|||+.+|+|.++|+.++.+-
T Consensus 2 ls~~~~~~L~~i~~l~~~~~~~~~~ela~~l~vs~~tvs~~l~~L 46 (142)
T 1on2_A 2 TTPSMEMYIEQIYMLIEEKGYARVSDIAEALAVHPSSVTKMVQKL 46 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhhcCCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 444544444433322 22367999999999999999999866543
No 197
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=75.11 E-value=3.4 Score=35.06 Aligned_cols=44 Identities=9% Similarity=0.169 Sum_probs=29.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+-.||..-+. .++.+.|..|||+.+|++.++|..++.+-
T Consensus 38 glt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~~vs~~l~~L 81 (148)
T 3jw4_A 38 GLNSQQGRMIGYIYE-NQESGIIQKDLAQFFGRRGASITSMLQGL 81 (148)
T ss_dssp TCCHHHHHHHHHHHH-HTTTCCCHHHHHHC------CHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCCCHHHHHHHHCCChhHHHHHHHHH
Confidence 599999888876654 22258999999999999999998866543
No 198
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=74.94 E-value=10 Score=32.81 Aligned_cols=52 Identities=10% Similarity=0.040 Sum_probs=37.4
Q ss_pred HHHHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 399 RQHVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 399 ~e~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+..+...+. .|++.+-.||...+. .+.+.+..|||+.+|++.++|..++.+-
T Consensus 17 ~~~~~~~l~~~gLt~~q~~vL~~L~~--~~~~~~~~eLa~~l~~~~~tvs~~v~~L 70 (151)
T 4aik_A 17 RALIDHRLKPLELTQTHWVTLYNINR--LPPEQSQIQLAKAIGIEQPSLVRTLDQL 70 (151)
T ss_dssp HHHHHHHTGGGCCCHHHHHHHHHHHH--SCTTSCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHH--cCCCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 344455553 488888877765432 2367899999999999999998866553
No 199
>2ppx_A AGR_C_3184P, uncharacterized protein ATU1735; HTH-motif, XRE-family, structural genomics, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: a.35.1.3
Probab=74.76 E-value=3.3 Score=33.40 Aligned_cols=25 Identities=12% Similarity=0.135 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||..+|+++++.
T Consensus 42 ~glsq~elA~~lgvs~~~is~~E~G 66 (99)
T 2ppx_A 42 LKLTQEEFSARYHIPLGTLRDWEQG 66 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHcC
Confidence 6899999999999999999999863
No 200
>3o9x_A Uncharacterized HTH-type transcriptional regulato; HTH-XRE DNA binding motif, transcriptional regulator, bacter antitoxin, Zn binding protein, transcription regulator-DNA; HET: DNA; 2.10A {Escherichia coli} PDB: 3gn5_A* 3gn5_B* 2kz8_A
Probab=74.62 E-value=9.2 Score=32.29 Aligned_cols=25 Identities=20% Similarity=0.235 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|+|.++|+++++.
T Consensus 83 ~glsq~~la~~~g~s~~~i~~~E~g 107 (133)
T 3o9x_A 83 LSLTQKEASEIFGGGVNAFSRYEKG 107 (133)
T ss_dssp TTCCHHHHHHHHCSCTTHHHHHHHT
T ss_pred cCCCHHHHHHHHCCCHHHHHHHHCC
Confidence 5799999999999999999999874
No 201
>3omt_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 1.65A {Cytophaga hutchinsonii}
Probab=74.57 E-value=2.4 Score=31.89 Aligned_cols=25 Identities=16% Similarity=0.062 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+++++.
T Consensus 20 ~glsq~~lA~~~gis~~~is~~e~g 44 (73)
T 3omt_A 20 KGKTNLWLTETLDKNKTTVSKWCTN 44 (73)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 202
>2pij_A Prophage PFL 6 CRO; transcription factor, helix-turn-helix, structural evolution, transcription; 1.70A {Pseudomonas fluorescens}
Probab=74.50 E-value=4.1 Score=30.07 Aligned_cols=22 Identities=14% Similarity=0.323 Sum_probs=20.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLE 449 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~ 449 (473)
.+ |+.++|+.+|||.++|++++
T Consensus 13 ~g-s~~~~A~~lgis~~~vs~~~ 34 (67)
T 2pij_A 13 HG-TQSALAAALGVNQSAISQMV 34 (67)
T ss_dssp TC-CHHHHHHHHTSCHHHHHHHH
T ss_pred cC-CHHHHHHHHCcCHHHHHHHH
Confidence 56 99999999999999999988
No 203
>3kz9_A SMCR; transcriptional regulator, quorum S DNA-binding, transcription regulation, transcription regula; HET: MSE; 2.10A {Vibrio vulnificus} PDB: 2pbx_A
Probab=74.45 E-value=31 Score=29.43 Aligned_cols=83 Identities=7% Similarity=0.051 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lGRe-PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.+|..+.|-. .|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+..
T Consensus 21 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 100 (206)
T 3kz9_A 21 QLMEIALEVFARRGIGRGGHADIAEIAQVSVATVFNYFPTREDLVDEVLNHVVRQFSNFLSDNIDLDLHAKENIANITNA 100 (206)
T ss_dssp HHHHHHHHHHHHSCCSSCCHHHHHHHHTSCHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHHHCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHH
Confidence 4566667777788855 899999999999999999988887777777777777766666666555555555555554444
Q ss_pred HHHH
Q 011992 366 LMKS 369 (473)
Q Consensus 366 L~kA 369 (473)
++..
T Consensus 101 ~~~~ 104 (206)
T 3kz9_A 101 MIEL 104 (206)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
No 204
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=74.45 E-value=4.2 Score=34.50 Aligned_cols=30 Identities=10% Similarity=0.076 Sum_probs=24.2
Q ss_pred HhCCCCCHHHHHHHcCCCHHHHHHHHhhcc
Q 011992 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGN 327 (473)
Q Consensus 298 ~lGRePT~eEiA~~lGms~eeL~~~l~~g~ 327 (473)
..-..-+..|||+.+|++...+...+..+.
T Consensus 120 ~~~~g~s~~EIA~~lgis~~tV~~~~~ra~ 149 (164)
T 3mzy_A 120 YLIRGYSYREIATILSKNLKSIDNTIQRIR 149 (164)
T ss_dssp HHTTTCCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHcCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 455667999999999999999888776543
No 205
>3anp_C Transcriptional repressor, TETR family; all alpha protein, DNA, acyl-COA; HET: DCC DAO; 1.95A {Thermus thermophilus} PDB: 3ang_C*
Probab=74.36 E-value=39 Score=29.28 Aligned_cols=62 Identities=18% Similarity=0.028 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY 348 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry 348 (473)
+|-++-.+|..+.|= .-|..+||+..|++...+.......+.-+..++..+...+.......
T Consensus 13 ~Il~aA~~lf~~~G~~~~t~~~Ia~~Agvs~gt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~ 75 (204)
T 3anp_C 13 RIFRAAMELFRNRGFQETTATEIAKAAHVSRGTFFNYYPYKEAVLLDYGSQLLAGLREEVRRL 75 (204)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHcCCchHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777785 47899999999999999999988877777777777766655544433
No 206
>3g5g_A Regulatory protein; transcriptional regulator, helix-turn-helix, restriction- modification, transcription regulator; 2.80A {Enterobacter SP} PDB: 3fya_A
Probab=74.34 E-value=3.6 Score=33.56 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+++++.
T Consensus 40 ~gltq~elA~~~gis~~~is~iE~G 64 (99)
T 3g5g_A 40 KGMTQEDLAYKSNLDRTYISGIERN 64 (99)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999999874
No 207
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=74.17 E-value=3.1 Score=34.91 Aligned_cols=37 Identities=16% Similarity=0.135 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+....||.+-.. .+.+..|||+.+|+|.++|+++++.
T Consensus 21 ~~r~~IL~~L~~----~~~~~~eLa~~lgis~stvs~~L~~ 57 (118)
T 2jsc_A 21 PTRCRILVALLD----GVCYPGQLAAHLGLTRSNVSNHLSC 57 (118)
T ss_dssp HHHHHHHHHHHT----TCCSTTTHHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444556654332 4689999999999999999986543
No 208
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=74.06 E-value=2.4 Score=35.53 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=31.4
Q ss_pred HHHHHhhCCH-HHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 402 VRNLLTLLNP-KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~Lpe-rER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+...+..|.. ....||.+-.. .+.+..|||+.+|+|.++|+++++.
T Consensus 8 ~~~~~~al~~~~R~~Il~~L~~----~~~~~~eLa~~l~is~~tvs~hL~~ 54 (118)
T 3f6o_A 8 LNGIFQALADPTRRAVLGRLSR----GPATVSELAKPFDMALPSFMKHIHF 54 (118)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHT----CCEEHHHHHTTCCSCHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 4444445543 44445544433 6789999999999999999986543
No 209
>3bd1_A CRO protein; transcription factor, helix-turn-helix, prophage, structural evolution, transcription; 1.40A {Xylella fastidiosa}
Probab=74.05 E-value=3.4 Score=31.71 Aligned_cols=24 Identities=17% Similarity=0.322 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+ |..++|+.+|||.++|+++++.
T Consensus 11 ~g-sq~~lA~~lgvs~~~is~~e~g 34 (79)
T 3bd1_A 11 LG-SVSALAASLGVRQSAISNWRAR 34 (79)
T ss_dssp HS-SHHHHHHHHTCCHHHHHHHHHH
T ss_pred hC-CHHHHHHHHCCCHHHHHHHHHC
Confidence 47 9999999999999999999976
No 210
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=74.01 E-value=5.6 Score=33.39 Aligned_cols=44 Identities=11% Similarity=0.049 Sum_probs=35.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+-.||...+. .++.+.|..|||+.+|++.++|..++.+-
T Consensus 34 ~lt~~q~~vL~~l~~-~~~~~~t~~eLa~~l~~~~~tvs~~l~~L 77 (127)
T 2frh_A 34 SISFEEFAVLTYISE-NKEKEYYLKDIINHLNYKQPQVVKAVKIL 77 (127)
T ss_dssp CCCHHHHHHHHHHHH-TCCSEEEHHHHHHHSSSHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-ccCCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 599999888877665 22257899999999999999998866543
No 211
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=73.90 E-value=11 Score=32.56 Aligned_cols=53 Identities=15% Similarity=0.092 Sum_probs=36.1
Q ss_pred HHHHHHHh--hCCHHHHHHHHHHhhccC--CCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 400 QHVRNLLT--LLNPKERCIVRLRFGIED--GKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 400 e~L~~aL~--~LperER~VL~LrY~L~~--ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
..+...+. .|++.+-.|+...+..++ +.++|..|||+.+|++.++|..++.+-
T Consensus 20 ~~~~~~l~~~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~L 76 (148)
T 4fx0_A 20 QAYDRALRPSGLTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVM 76 (148)
T ss_dssp HHHHHHHGGGTCCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHH
Confidence 34445553 589998888876654222 246899999999999999999877664
No 212
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=73.86 E-value=3.8 Score=36.37 Aligned_cols=53 Identities=11% Similarity=0.055 Sum_probs=37.9
Q ss_pred HHHHHHh--hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 401 HVRNLLT--LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 401 ~L~~aL~--~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.+...+. .|++.+-.||...+.-+.+.+.|..|||+.+|++.++|+.++.+-.
T Consensus 57 ~~~~~l~~~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le 111 (181)
T 2fbk_A 57 EIERTYAASGLNAAGWDLLLTLYRSAPPEGLRPTELSALAAISGPSTSNRIVRLL 111 (181)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHCSCCSGGGSSHHHHHH
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3444443 5899999988776641111248999999999999999988665533
No 213
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=73.80 E-value=11 Score=30.77 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhc
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g 326 (473)
.+.++..-+.+.+...++.+++|+.+|++...|.+.++..
T Consensus 8 ~i~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 8 KLTEAVSLMEANIEEPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp HHHHHHHHHHTCSSSCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhcCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3455666667778888999999999999999999888764
No 214
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=73.77 E-value=22 Score=28.64 Aligned_cols=71 Identities=11% Similarity=0.155 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhc-chHHHHHHHHHHHHHHHHHHHhhcCC---cchhhHhhh
Q 011992 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG-NSSREKLINANLRLVVHVAKQYQGRG---ISLHDLLQE 361 (473)
Q Consensus 288 le~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g-~~A~e~Li~~yl~lV~sIA~ry~~~~---~saEDLiQE 361 (473)
++++..-+.+.++.+++.+++|+.+|++...|.+.++.. .....+.+.... +..|...+..+ .++.|+..+
T Consensus 4 i~~~~~~i~~~~~~~~~~~~lA~~~~~s~~~l~r~fk~~~G~s~~~~~~~~R---l~~A~~lL~~~~~~~si~~IA~~ 78 (108)
T 3mn2_A 4 VRQVEEYIEANWMRPITIEKLTALTGISSRGIFKAFQRSRGYSPMAFAKRVR---LQHAHNLLSDGATPTTVTAAALS 78 (108)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHTCCHHHHHHHHHHHTSSCHHHHHHHHH---HHHHHHHHHSSSSCCCHHHHHHH
T ss_pred HHHHHHHHHHcccCCCCHHHHHHHHCCCHHHHHHHHHHHhCcCHHHHHHHHH---HHHHHHHHHcCCCCCCHHHHHHH
Confidence 455666677788888999999999999999999988764 233333333332 22344443332 366665543
No 215
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=73.74 E-value=3.4 Score=32.98 Aligned_cols=27 Identities=26% Similarity=0.334 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHH-HHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKER-VRQLESRAL 453 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~r-Vrqi~~RAL 453 (473)
.+.|..|||+.+|++.++ |+.++.+-.
T Consensus 29 ~~~t~~eLa~~l~is~~t~vs~~l~~Le 56 (95)
T 2pg4_A 29 YEPSLAEIVKASGVSEKTFFMGLKDRLI 56 (95)
T ss_dssp CCCCHHHHHHHHCCCHHHHHTTHHHHHH
T ss_pred CCCCHHHHHHHHCCCchHHHHHHHHHHH
Confidence 479999999999999999 988765543
No 216
>2o38_A Hypothetical protein; alpha-beta, helix-turn-helix, structural genomics, PSI-2, PR structure initiative; 1.83A {Rhodopseudomonas palustris} SCOP: a.35.1.13
Probab=73.43 E-value=3.7 Score=34.96 Aligned_cols=25 Identities=16% Similarity=0.251 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||..+|+++++.
T Consensus 52 ~glTQ~eLA~~lGis~~~Is~iE~G 76 (120)
T 2o38_A 52 ARLSQAAAAARLGINQPKVSALRNY 76 (120)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999999873
No 217
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=73.26 E-value=16 Score=29.42 Aligned_cols=39 Identities=10% Similarity=0.106 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhc
Q 011992 288 LEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSG 326 (473)
Q Consensus 288 le~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g 326 (473)
+.++..-+.+.++ ..++.+++|+.+|++...+.+.++..
T Consensus 5 i~~~~~~i~~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 5 VREACQYISDHLADSNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp HHHHHHHHHHTSSCSSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 5556666777787 89999999999999999999888763
No 218
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=73.16 E-value=5.7 Score=34.29 Aligned_cols=43 Identities=2% Similarity=-0.035 Sum_probs=34.8
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+-.||..-+. ..+.|..|||+.+|++.++|..++.+-.
T Consensus 50 glt~~q~~vL~~l~~---~~~~t~~eLa~~l~~~~~~vs~~l~~Le 92 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSA---YGELTVGQLATLGVMEQSTTSRTVDQLV 92 (161)
T ss_dssp TCCHHHHHHHHHHHH---HSEEEHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh---CCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 599999888876553 1589999999999999999998666543
No 219
>3bqz_B HTH-type transcriptional regulator QACR; multidrug resistance, TETR, malachite green, DNA- binding, plasmid, repressor; HET: MGR; 2.17A {Staphylococcus aureus} PDB: 3br1_B* 3br3_B* 3pm1_B* 1rkw_B* 1jt0_A* 1jty_B* 1jum_B* 1jup_B* 1jtx_B* 1jus_B* 2dtz_B 2gby_B* 2hq5_B 3br2_B* 3br5_B* 1qvt_B* 1qvu_B* 3br0_B* 3br6_B* 1jt6_B* ...
Probab=72.90 E-value=28 Score=29.57 Aligned_cols=75 Identities=13% Similarity=-0.022 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhh
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQE 361 (473)
+|-++-.++..+.| ...|..+||+.+|++...+.......+.-+..++..+...+............+..+.+..
T Consensus 6 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 81 (194)
T 3bqz_B 6 KILGVAKELFIKNGYNATTTGEIVKLSESSKGNLYYHFKTKENLFLEILNIEESKWQEQWKKEQIKAKTNREKFYL 81 (194)
T ss_dssp HHHHHHHHHHHHHTTTTCCHHHHHHHTTCCHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHHHHGGGCCSHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHhCCCchhHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHH
Confidence 34455566666777 5689999999999999999998887777777777766665555444443333344444433
No 220
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=72.35 E-value=2.3 Score=35.71 Aligned_cols=43 Identities=16% Similarity=0.176 Sum_probs=34.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.+..|+...+. +.+.|..|||+.+|++.++|+.++.+-.
T Consensus 34 ~l~~~~~~iL~~l~~---~~~~~~~ela~~l~~~~~tvs~~l~~L~ 76 (142)
T 2bv6_A 34 NLTYPQFLVLTILWD---ESPVNVKKVVTELALDTGTVSPLLKRME 76 (142)
T ss_dssp TCCHHHHHHHHHHHH---SSEEEHHHHHHHTTCCTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 589988888876554 2568999999999999999988655433
No 221
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=72.07 E-value=3.2 Score=33.20 Aligned_cols=43 Identities=7% Similarity=0.063 Sum_probs=32.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHH----HHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEV----GNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEI----Ae~LGIS~~rVrqi~~RAL 453 (473)
.|++.+-.||...+. ..+.+..|| |+.+|++.++|+.++.+-.
T Consensus 5 ~lt~~q~~iL~~l~~---~~~~~~~el~~~la~~l~is~~tvs~~l~~Le 51 (99)
T 1tbx_A 5 PFFYPEAIVLAYLYD---NEGIATYDLYKKVNAEFPMSTATFYDAKKFLI 51 (99)
T ss_dssp SSBCHHHHHHHHHTT---CTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---cCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 366777777765543 367999999 8999999999988665443
No 222
>2g7s_A Transcriptional regulator, TETR family; APC5906, PSI, protein structure initiat midwest center for structural genomics, MCSG; HET: MSE; 1.40A {Agrobacterium tumefaciens str} SCOP: a.4.1.9 a.121.1.1
Probab=71.87 E-value=23 Score=29.94 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHH
Q 011992 286 IRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364 (473)
Q Consensus 286 ~kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~l 364 (473)
.+|-++-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+.
T Consensus 11 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 90 (194)
T 2g7s_A 11 DDILQCARTLIIRGGYNSFSYADISQVVGIRNASIHHHFPSKSDLVCKLVSQYRQEAEAGIAELEKNISDPLEQLRAYIG 90 (194)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHH
Confidence 355666677777778 4589999999999999999998887777777777766655554444433323344455544444
Q ss_pred HHHHHh
Q 011992 365 GLMKSV 370 (473)
Q Consensus 365 gL~kAi 370 (473)
.++..+
T Consensus 91 ~~~~~~ 96 (194)
T 2g7s_A 91 YWEGCI 96 (194)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 444433
No 223
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=71.64 E-value=18 Score=29.92 Aligned_cols=70 Identities=20% Similarity=0.172 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhh
Q 011992 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG-RGISLHDLLQ 360 (473)
Q Consensus 288 le~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~-~~~saEDLiQ 360 (473)
+.++..-+.+.+...++.++||+.+|++...|.+.++.-...+.+.+.... +..|..++. .+.++.|+..
T Consensus 9 ~~~~~~~i~~~~~~~~~~~~lA~~~~~S~~~l~r~fk~~G~s~~~~~~~~R---l~~A~~lL~~~~~si~eIA~ 79 (120)
T 3mkl_A 9 RTRVCTVINNNIAHEWTLARIASELLMSPSLLKKKLREEETSYSQLLTECR---MQRALQLIVIHGFSIKRVAV 79 (120)
T ss_dssp HHHHHHHHHTSTTSCCCHHHHHHHTTCCHHHHHHHHHHTTCCHHHHHHHHH---HHHHHHHHTSTTCCHHHHHH
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHCcCHHHHHHHHHHcCCCHHHHHHHHH---HHHHHHHHHcCCCCHHHHHH
Confidence 344555566677888999999999999999998887654333333333321 223344433 4556665554
No 224
>3vk0_A NHTF, transcriptional regulator; HTH motif, XRE transcription factor, DNA binding protein; 1.88A {Neisseria meningitidis}
Probab=71.59 E-value=3.7 Score=34.00 Aligned_cols=25 Identities=28% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+++++.
T Consensus 33 ~gltq~elA~~~gis~~~is~~E~G 57 (114)
T 3vk0_A 33 KGWSQEELARQCGLDRTYVSAVERK 57 (114)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999764
No 225
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=71.47 E-value=3.6 Score=33.80 Aligned_cols=46 Identities=17% Similarity=0.188 Sum_probs=32.5
Q ss_pred HHHHHhhCCHHHHH-HHHHHhhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011992 402 VRNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~LperER~-VL~LrY~L~~ge~lTlkEIAe~L-GIS~~rVrqi~~R 451 (473)
+...++.|..+-+. ||..-+. .+.++.||++.+ |+|.++|++.+.+
T Consensus 4 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tls~~L~~ 51 (107)
T 2hzt_A 4 VEATLEVIGGKWKXVILXHLTH----GKKRTSELKRLMPNITQKMLTQQLRE 51 (107)
T ss_dssp HHHHHHHHCSTTHHHHHHHHTT----CCBCHHHHHHHCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhcCCCHHHHHHHHHH
Confidence 44566667766653 3332222 579999999999 9999999986554
No 226
>3bhq_A Transcriptional regulator; bacterial RE proteins, structural genomics, joint center for structural JCSG, protein structure initiative, PSI-2; HET: MSE; 1.54A {Mesorhizobium loti}
Probab=71.43 E-value=49 Score=28.91 Aligned_cols=60 Identities=10% Similarity=0.077 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ 346 (473)
+|-.+-.+|..+.|= ..|..+||++.|++...+.......+.-+..++..+...+.....
T Consensus 16 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvsk~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~ 76 (211)
T 3bhq_A 16 EIIQAATAAFISKGYDGTSMEEIATKAGASKQTVYKHFTDKETLFGEVVLSTASQVNDIIE 76 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHh
Confidence 456666777777885 489999999999999999999888777777777776665544433
No 227
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=71.40 E-value=6.7 Score=30.35 Aligned_cols=41 Identities=7% Similarity=-0.018 Sum_probs=30.9
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHH-----CCCHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIF-----GLSKERVRQLES 450 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~L-----GIS~~rVrqi~~ 450 (473)
.++++...|+.+-.. .+ .++|..||++.+ ++|..||+..+.
T Consensus 14 ~~t~~r~~IL~~l~~--~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~ 60 (83)
T 2fu4_A 14 KVTLPRLKILEVLQE--PDNHHVSAEDLYKRLIDMGEEIGLATVYRVLN 60 (83)
T ss_dssp CCCHHHHHHHHHHTS--GGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CcCHHHHHHHHHHHh--CCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHH
Confidence 377777777765442 22 579999999999 999999987544
No 228
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=71.26 E-value=3.4 Score=34.82 Aligned_cols=44 Identities=9% Similarity=0.082 Sum_probs=34.2
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
.|++.+-.|+...+. +.+.+..|||+.+|++.++|+.++.+-.+
T Consensus 37 ~l~~~~~~iL~~l~~---~~~~~~~~la~~l~~~~~tvs~~l~~L~~ 80 (147)
T 1z91_A 37 NITYPQYLALLLLWE---HETLTVKKMGEQLYLDSGTLTPMLKRMEQ 80 (147)
T ss_dssp CCCHHHHHHHHHHHH---HSEEEHHHHHHTTTCCHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCCCHHHHHHHHCCCcCcHHHHHHHHHH
Confidence 488888887765543 15789999999999999999986655443
No 229
>2wus_R RODZ, putative uncharacterized protein; structural protein, cell WALL morphogenesis, bacterial cytos bacterial actin; 2.90A {Thermotoga maritima}
Probab=71.21 E-value=4.8 Score=33.90 Aligned_cols=25 Identities=8% Similarity=0.270 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|++|+|+.+|||.++|+.++..
T Consensus 19 ~glSq~eLA~~~gis~~~is~iE~G 43 (112)
T 2wus_R 19 RRITLLDASLFTNINPSKLKRIEEG 43 (112)
T ss_dssp TTCCHHHHHHHSSCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999999975
No 230
>1gdt_A GD resolvase, protein (gamma delta resolvase); protein-DNA complex, double helix, overhanging base, DNA binding protein/DNA complex; 3.00A {Escherichia coli} SCOP: a.4.1.2 c.53.1.1 PDB: 1zr4_A 1zr2_A 2gm4_A 1res_A 1ret_A
Probab=71.21 E-value=4 Score=36.69 Aligned_cols=31 Identities=6% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 415 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 415 ~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
.|+.++ . +|.|..+||+.||+|.++|..++.
T Consensus 150 ~i~~~~-~----~G~s~~~Ia~~l~is~~tv~r~l~ 180 (183)
T 1gdt_A 150 AVLNMW-Q----QGLGASHISKTMNIARSTVYKVIN 180 (183)
T ss_dssp HHHHHH-H----TTCCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHH-H----CCCCHHHHHHHHCcCHHHHHHHHh
Confidence 455544 4 689999999999999999998764
No 231
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=71.16 E-value=3.5 Score=33.12 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHH-HHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKE-RVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~-rVrqi~~R 451 (473)
.+.|..+||+.|||+.. .|++++.+
T Consensus 24 g~~ta~eiA~~Lgit~~~aVr~hL~~ 49 (79)
T 1xmk_A 24 SDSSALNLAKNIGLTKARDINAVLID 49 (79)
T ss_dssp CCEEHHHHHHHHCGGGHHHHHHHHHH
T ss_pred CCcCHHHHHHHcCCCcHHHHHHHHHH
Confidence 58899999999999999 99986654
No 232
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=71.13 E-value=4.5 Score=35.49 Aligned_cols=52 Identities=8% Similarity=0.016 Sum_probs=37.5
Q ss_pred HHHHHHH--hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 400 QHVRNLL--TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 400 e~L~~aL--~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
..+...+ ..|+..+-.||...+. .+.+.|..|||+.+|++.++|..++.+-.
T Consensus 40 ~~~~~~l~~~glt~~q~~vL~~L~~--~~~~~t~~eLa~~l~i~~~tvs~~l~~Le 93 (166)
T 3deu_A 40 ALIDHRLKPLELTQTHWVTLHNIHQ--LPPDQSQIQLAKAIGIEQPSLVRTLDQLE 93 (166)
T ss_dssp HHHHHHTTTTTCCHHHHHHHHHHHH--SCSSEEHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCCHHHHHHHHHHHH--cCCCCCHHHHHHHHCCCHhhHHHHHHHHH
Confidence 3444444 3588888888765542 13679999999999999999998665543
No 233
>2l8n_A Transcriptional repressor CYTR; bacterial gene repressor, helix turn helix binding domain, L family, transcription regulation, binding protein; NMR {Escherichia coli} PDB: 2lcv_A
Probab=71.00 E-value=1.8 Score=33.47 Aligned_cols=23 Identities=13% Similarity=0.083 Sum_probs=20.9
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
..|++|||+.+|||..+|+.+++
T Consensus 9 ~~t~~diA~~aGVS~sTVSr~ln 31 (67)
T 2l8n_A 9 AATMKDVALKAKVSTATVSRALM 31 (67)
T ss_dssp CCCHHHHHHHTTCCHHHHHHTTT
T ss_pred CCCHHHHHHHHCCCHHHHHHHHc
Confidence 47999999999999999999875
No 234
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=70.52 E-value=64 Score=29.88 Aligned_cols=58 Identities=21% Similarity=0.257 Sum_probs=40.0
Q ss_pred CCCChHHHHHHHHHHHHHHH-----HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcc
Q 011992 268 KLLTADEEFELIAQIQDLIR-----LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGN 327 (473)
Q Consensus 268 ~lLT~eEE~~L~~~iq~l~k-----le~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~ 327 (473)
..|++||-.+.-.+|..+.+ +..-...+..+ +.-|..++|+.+|++...|-+.+.++.
T Consensus 6 ~~~~~~~~~~~~~~ie~~~~e~p~~l~~~Ik~~l~~--~gitQ~~lA~~~GiSqs~ISr~l~~~~ 68 (194)
T 1ic8_A 6 ENLSPEEAAHQKAVVETLLQEDPWRVAKMVKSYLQQ--HNIPQREVVDTTGLNQSHLSQHLNKGT 68 (194)
T ss_dssp CSCCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--TTCCHHHHHHHHCCCHHHHHHHHHSBC
T ss_pred hhcCCchhHHHHHHHHHHHccCHHHHHHHHHHHHHH--cCCCHHHHHHHhCCChHHHHHHHhcCc
Confidence 45788877777777776654 22222223333 447899999999999999998887664
No 235
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=70.40 E-value=0.89 Score=45.55 Aligned_cols=42 Identities=12% Similarity=0.139 Sum_probs=0.0
Q ss_pred CCHHHHHHHHH-HhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRL-RFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 409 LperER~VL~L-rY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
+.+++..||.. +|. ++.+.+|||+.||+|+.+|+..+.+..+
T Consensus 18 ~~~r~~~iL~~l~~~----~~~t~~eLa~~l~vs~~Tv~r~l~~Le~ 60 (345)
T 2o0m_A 18 VLQERFQILRNIYWM----QPIGRRSLSETMGITERVLRTETDVLKQ 60 (345)
T ss_dssp -----------------------------------------------
T ss_pred hhHHHHHHHHHHHHc----CCCCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 44555556554 454 7899999999999999999998776443
No 236
>2ao9_A Phage protein; structural genomics, nine-fold NCS., PSI, protein structure initiative, midwest center for structural genomics, MCSG, U function; 1.90A {Bacillus cereus} SCOP: a.4.1.17
Probab=70.39 E-value=7.4 Score=35.13 Aligned_cols=45 Identities=13% Similarity=0.233 Sum_probs=30.4
Q ss_pred hhCCHHHHHHHHHH----hhc-cCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLR----FGI-EDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 407 ~~LperER~VL~Lr----Y~L-~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..+++..+....+. +.. ++++++|..|||+.||||++++..+...
T Consensus 22 r~yt~EfK~aAv~l~~~~~~~p~~~~~lTv~eIA~~LGIS~~TLyrW~k~ 71 (155)
T 2ao9_A 22 QKLTAKQIQAAYLLVENELMESNNEEKRTQDEMANELGINRTTLWEWRTK 71 (155)
T ss_dssp TTSCHHHHHHHHHHHHHHHCC---CCCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhcCHHHHHHHHHHHHccccccccccCCCHHHHHHHhCCCHHHHHHHHHc
Confidence 34666655544321 111 1234799999999999999999998773
No 237
>3jsj_A Putative TETR-family transcriptional regulator; DNA-binding, transcription regulation; 2.10A {Streptomyces avermitilis ma-4680}
Probab=70.38 E-value=50 Score=28.09 Aligned_cols=82 Identities=17% Similarity=0.054 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHH
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGL 366 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL 366 (473)
+|-.+-.++..+.|=..|..+||+..|++...+.....+.+.-+..++..+...+............+..+.+...+..+
T Consensus 13 ~Il~aA~~lf~~~G~~~t~~~IA~~aGvs~~tly~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 92 (190)
T 3jsj_A 13 RLLEAAAALTYRDGVGIGVEALCKAAGVSKRSMYQLFESKDELLAASLKERSAAFVAKALPPADDGRSPRERILYVFERV 92 (190)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHHTCCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHSCCTTSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCccccHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45556666777777668899999999999999999888766666666666655554444333333334555554444444
Q ss_pred HH
Q 011992 367 MK 368 (473)
Q Consensus 367 ~k 368 (473)
+.
T Consensus 93 ~~ 94 (190)
T 3jsj_A 93 ES 94 (190)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 238
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=70.31 E-value=5.2 Score=31.81 Aligned_cols=26 Identities=23% Similarity=0.143 Sum_probs=20.9
Q ss_pred HHhCCCCCHHHHHHHcCCCHHHHHHH
Q 011992 297 SQFGREPTLIEWAKAIGLSCRDLKSE 322 (473)
Q Consensus 297 ~~lGRePT~eEiA~~lGms~eeL~~~ 322 (473)
+..|.+||..|||+++|++...+.+-
T Consensus 19 ~~~g~~psv~EIa~~lgvS~~TVrr~ 44 (77)
T 2jt1_A 19 MDDGAPVKTRDIADAAGLSIYQVRLY 44 (77)
T ss_dssp HHTTSCEEHHHHHHHHTCCHHHHHHH
T ss_pred hccCCCcCHHHHHHHHCCCHHHHHHH
Confidence 33599999999999999997665543
No 239
>2ibd_A Possible transcriptional regulator; probable transcriptional regulatory protein, rhodococcus SP. structural genomics, PSI-2; 1.50A {Rhodococcus SP}
Probab=70.29 E-value=49 Score=28.73 Aligned_cols=75 Identities=17% Similarity=0.196 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQE 361 (473)
+|-++-.+|..+.|= .-|..+||++.|++...+.......+.-+..++..+...+............+..+.+..
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 93 (204)
T 2ibd_A 18 ELLDIAATLFAERGLRATTVRDIADAAGILSGSLYHHFDSKESMVDEILRGFLDDLFGKYREIVASGLDSRATLEA 93 (204)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTSCHHHHHHHCSCHHHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHHHcCchhcCHHHHHHHhCCCchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHH
Confidence 456666677777784 478999999999999999988887777777777766665554444433333444444433
No 240
>3bru_A Regulatory protein, TETR family; structural genomics, APC88928, PSI-2, protein structur initiative; 2.30A {Rhodobacter sphaeroides 2}
Probab=70.05 E-value=41 Score=29.27 Aligned_cols=86 Identities=12% Similarity=-0.033 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR-GISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~-~~saEDLiQEg~l 364 (473)
+|-.+-.++..+.| ..-|..+||+..|++...+.......+..+..++..+...+.......... ..+..+.+...+.
T Consensus 34 ~Il~aA~~l~~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 113 (222)
T 3bru_A 34 SLIRAGLEHLTEKGYSSVGVDEILKAARVPKGSFYHYFRNKADFGLALIEAYDTYFARLLDQAFLDGSLAPLARLRLFTR 113 (222)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCcHHHHHHHhCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHH
Confidence 45566667777778 468999999999999999999888777777777777766655544444333 3345555554444
Q ss_pred HHHHHhhh
Q 011992 365 GLMKSVEK 372 (473)
Q Consensus 365 gL~kAiek 372 (473)
.++..+..
T Consensus 114 ~~~~~~~~ 121 (222)
T 3bru_A 114 MAEEGMAR 121 (222)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHhh
Confidence 44444433
No 241
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=70.03 E-value=2.3 Score=34.81 Aligned_cols=25 Identities=12% Similarity=0.206 Sum_probs=22.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 429 KSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 429 lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.++.+||..+||+.++|+.+..+..
T Consensus 31 ~s~~~va~~~gIs~~tl~~W~~~~~ 55 (108)
T 2rn7_A 31 ATICSIAPKIGCTPETLRVWVRQHE 55 (108)
T ss_dssp HHHHHHHHHHTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHCcCHHHHHHHHHHHH
Confidence 7999999999999999999987753
No 242
>2r0q_C Putative transposon TN552 DNA-invertase BIN3; site-specific recombinase, resolvase, DNA-binding protein, protein-DNA complex, DNA integration, DNA invertase, DNA recombination; 3.20A {Staphylococcus aureus}
Probab=70.00 E-value=3.8 Score=37.70 Aligned_cols=32 Identities=9% Similarity=0.293 Sum_probs=25.5
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 414 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 414 R~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+.|+.++- .|.+..+||+.||+|.++|..++.
T Consensus 166 ~~i~~~~~-----~G~s~~~Ia~~l~is~~tv~r~l~ 197 (209)
T 2r0q_C 166 HRVVEMLE-----EGQAISKIAKEVNITRQTVYRIKH 197 (209)
T ss_dssp HHHHHHHH-----TTCCHHHHHHHHTCCHHHHHHHHT
T ss_pred HHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHh
Confidence 44555443 689999999999999999988764
No 243
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=69.83 E-value=8.6 Score=36.80 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=34.8
Q ss_pred HHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 405 LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 405 aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.-..|++.+..||..-.. ..+.|..|||+.+|+++++|+.++.+
T Consensus 146 ~~~~L~~~~~~IL~~L~~---~~~~s~~eLA~~lglsksTv~r~L~~ 189 (244)
T 2wte_A 146 LMRDYSREEMKLLNVLYE---TKGTGITELAKMLDKSEKTLINKIAE 189 (244)
T ss_dssp HHSCCCHHHHHHHHHHHH---HTCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccCCCCHHHHHHHHHHHH---cCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 445799999999876432 15799999999999999999876544
No 244
>2f07_A YVDT; helix-turn-helix, transcription; HET: BTB; 2.30A {Bacillus subtilis subsp}
Probab=69.78 E-value=46 Score=28.85 Aligned_cols=73 Identities=12% Similarity=0.086 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.++..+.|= .-|..+||+..|++...+.......+.-+..++..+...+............+..+.+
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~Ia~~Agvskgt~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 87 (197)
T 2f07_A 14 KILQAAIEVISEKGLDKASISDIVKKAGTAQGTFYLYFSSKNALIPAIAENLLTHTLDQIKGRLHGDEDFWTVL 87 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSSTTHHHHHHHHHHHHHHHHHHHTCCSCCCHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 455666677777784 4789999999999999999999888888888887777666555444433333444433
No 245
>3op9_A PLI0006 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, transcription regulat; HET: MSE; 1.90A {Listeria innocua}
Probab=69.77 E-value=4.7 Score=33.04 Aligned_cols=25 Identities=8% Similarity=0.106 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+++|+.+|||.++|+++++.
T Consensus 21 ~glsq~~lA~~~gis~~~i~~~e~g 45 (114)
T 3op9_A 21 HGLKNHQIAELLNVQTRTVAYYMSG 45 (114)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6799999999999999999999874
No 246
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=69.67 E-value=4.2 Score=31.81 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+++|+.+|||.++|+++++.
T Consensus 29 ~glsq~~lA~~~gis~~~is~~e~g 53 (92)
T 1lmb_3 29 LGLSQESVADKMGMGQSGVGALFNG 53 (92)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 247
>3a03_A T-cell leukemia homeobox protein 2; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.54A {Homo sapiens}
Probab=69.59 E-value=9.1 Score=27.89 Aligned_cols=51 Identities=6% Similarity=0.070 Sum_probs=36.8
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
..++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|+
T Consensus 3 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr 54 (56)
T 3a03_A 3 SFSRSQVLELERRFLRQKYLASAERAALAKALRMTDAQVKTWFQNRRTKWRR 54 (56)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHhcCCcCHHHHHHHHHHhCcCHHHhhHhhHHhhhhhcc
Confidence 4567777777777753221 22345688999999999999998887777765
No 248
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=69.58 E-value=5.4 Score=32.19 Aligned_cols=25 Identities=32% Similarity=0.397 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 13 ~gltq~~lA~~~gis~~~i~~~e~g 37 (111)
T 1b0n_A 13 KGYSLSELAEKAGVAKSYLSSIERN 37 (111)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999875
No 249
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=69.55 E-value=9 Score=35.16 Aligned_cols=42 Identities=17% Similarity=0.159 Sum_probs=34.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|++.+-.||..-+. ..+.|..|||+.+|++.++|..++.+-
T Consensus 45 gLt~~q~~iL~~L~~---~~~~t~~eLa~~l~i~~stvs~~l~~L 86 (207)
T 2fxa_A 45 DLNINEHHILWIAYQ---LNGASISEIAKFGVMHVSTAFNFSKKL 86 (207)
T ss_dssp TCCHHHHHHHHHHHH---HTSEEHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHH---CCCcCHHHHHHHHCCCHHHHHHHHHHH
Confidence 589999888866543 157999999999999999998866543
No 250
>3mlf_A Transcriptional regulator; structural genomics, helix-turn-helix XRE-family like protei transcription regulator, PSI-2; 2.60A {Staphylococcus aureus subsp}
Probab=69.50 E-value=5.5 Score=33.09 Aligned_cols=25 Identities=20% Similarity=0.440 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|++++..
T Consensus 35 ~gltq~elA~~~gis~~~is~~E~G 59 (111)
T 3mlf_A 35 YGLTQKELGDLFKVSSRTIQNMEKD 59 (111)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHHC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 6899999999999999999999874
No 251
>3he0_A Transcriptional regulator, TETR family; ACRR, vibrio parahaemolytic structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.20A {Vibrio parahaemolyticus}
Probab=69.47 E-value=18 Score=30.88 Aligned_cols=81 Identities=7% Similarity=0.101 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+..
T Consensus 15 ~il~aa~~lf~~~G~~~~tv~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (196)
T 3he0_A 15 QILAAAEQLIAESGFQGLSMQKLANEAGVAAGTIYRYFSDKEHLLEEVRLNVAKRIASAVQAGVNDDMPLKERYRTMWLN 94 (196)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHTTTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 45566666777778 55999999999999999998877765565556666555544444433333334444444444433
Q ss_pred HH
Q 011992 366 LM 367 (473)
Q Consensus 366 L~ 367 (473)
++
T Consensus 95 ~~ 96 (196)
T 3he0_A 95 IW 96 (196)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 252
>2ict_A Antitoxin HIGA; helix-turn-helix, structural genomics, PSI-2, protein struct initiative, northeast structural genomics consortium, NESG; 1.63A {Escherichia coli} SCOP: a.35.1.3 PDB: 2icp_A
Probab=69.34 E-value=5.3 Score=31.55 Aligned_cols=25 Identities=16% Similarity=0.165 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 20 ~gltq~~lA~~~gis~~~is~~e~g 44 (94)
T 2ict_A 20 LNVSLREFARAMEIAPSTASRLLTG 44 (94)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 5799999999999999999999875
No 253
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=69.30 E-value=3.8 Score=35.42 Aligned_cols=25 Identities=16% Similarity=0.266 Sum_probs=22.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.+..+||+.+|||.++|+..+.+
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~ 77 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKR 77 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHH
Confidence 6799999999999999999886554
No 254
>2l49_A C protein; P2 bacteriophage, P2 C, direct repeats, DNA-binding protein, binding protein; NMR {Enterobacteria phage P2} PDB: 2xcj_A
Probab=69.30 E-value=4.7 Score=31.98 Aligned_cols=25 Identities=16% Similarity=0.181 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 16 ~gltq~~lA~~~gis~~~is~~e~g 40 (99)
T 2l49_A 16 EYLSRQQLADLTGVPYGTLSYYESG 40 (99)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999998874
No 255
>1z4h_A TORI, TOR inhibition protein; winged helix, reverse turn, protein binding, DNA binding protein; NMR {Escherichia coli}
Probab=68.87 E-value=3.9 Score=31.00 Aligned_cols=26 Identities=12% Similarity=-0.040 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.-++.+|+|+.+|||+++|..+.++.
T Consensus 9 ~~l~~~eva~~lgvsrstiy~~~~~g 34 (66)
T 1z4h_A 9 SLVDLKFIMADTGFGKTFIYDRIKSG 34 (66)
T ss_dssp SEECHHHHHHHHSSCHHHHHHHHHHH
T ss_pred cccCHHHHHHHHCcCHHHHHHHHHCC
Confidence 45789999999999999999988764
No 256
>3kxa_A NGO0477 protein, putative uncharacterized protein; NEW protein fold, OPPF, STRU genomics, oxford protein production facility; 2.80A {Neisseria gonorrhoeae}
Probab=68.82 E-value=5.1 Score=34.96 Aligned_cols=25 Identities=24% Similarity=0.323 Sum_probs=23.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|||.++|+++++.
T Consensus 80 ~glTq~elA~~lGis~s~is~~E~G 104 (141)
T 3kxa_A 80 KGFTQSELATAAGLPQPYLSRIENS 104 (141)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999984
No 257
>2qtq_A Transcriptional regulator, TETR family; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: MSE; 1.85A {Novosphingobium aromaticivorans} PDB: 2rha_A*
Probab=68.80 E-value=56 Score=28.04 Aligned_cols=83 Identities=13% Similarity=0.121 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG-ISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~-~saEDLiQEg~l 364 (473)
+|-.+-.++..+.|= ..|..+||+.+|++...+.......+..+..++..+...+........... .+..+.+...+.
T Consensus 20 ~Il~aa~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 99 (213)
T 2qtq_A 20 LLLQTASNIMREGDVVDISLSELSLRSGLNSALVKYYFGNKAGLLKALLDRDMENIVKSVDALLAKDDMSPEAKLRRHIS 99 (213)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHCCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccccHHHHHHHhCCChhhHhHhcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 455555666666774 689999999999999999999988777777777777776666555555444 565555555544
Q ss_pred HHHHH
Q 011992 365 GLMKS 369 (473)
Q Consensus 365 gL~kA 369 (473)
.++..
T Consensus 100 ~~~~~ 104 (213)
T 2qtq_A 100 KCIDT 104 (213)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
No 258
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=68.80 E-value=7.4 Score=32.17 Aligned_cols=46 Identities=15% Similarity=0.194 Sum_probs=32.9
Q ss_pred HHHHHhhCCHHHH-HHHHHHhhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011992 402 VRNLLTLLNPKER-CIVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 451 (473)
Q Consensus 402 L~~aL~~LperER-~VL~LrY~L~~ge~lTlkEIAe~L-GIS~~rVrqi~~R 451 (473)
+...+..+..+-+ .||..-+. .+.++.|||+.+ |++.++|++++.+
T Consensus 12 ~~~~l~~l~~~~~~~IL~~L~~----~~~~~~eLa~~l~~is~~tvs~~L~~ 59 (112)
T 1z7u_A 12 INLALSTINGKWKLSLMDELFQ----GTKRNGELMRALDGITQRVLTDRLRE 59 (112)
T ss_dssp HHHHHHTTCSTTHHHHHHHHHH----SCBCHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHHcCccHHHHHHHHHh----CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 5566777776544 34433333 579999999999 9999999886554
No 259
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=68.66 E-value=7.2 Score=35.35 Aligned_cols=39 Identities=18% Similarity=0.209 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++.+.|+.+-. .++...|.+|||+.+|||+.+|++.+.+
T Consensus 21 ~R~~~Il~~L~--~~~~~~s~~eLa~~l~vS~~Ti~rdi~~ 59 (187)
T 1j5y_A 21 ERLKSIVRILE--RSKEPVSGAQLAEELSVSRQVIVQDIAY 59 (187)
T ss_dssp HHHHHHHHHHH--HCSSCBCHHHHHHHHTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HcCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 45566655433 1235699999999999999999987663
No 260
>2hin_A GP39, repressor protein; transcription factor, dimer interface, helix-turn-helix; 1.05A {Enterobacteria phage N15} PDB: 3qws_A
Probab=68.62 E-value=4.1 Score=31.94 Aligned_cols=22 Identities=14% Similarity=0.093 Sum_probs=20.0
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 011992 430 SLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 430 TlkEIAe~LGIS~~rVrqi~~R 451 (473)
+..++|+.||||+.+|++++..
T Consensus 12 ~~~~lA~~lGVs~~aVs~W~~g 33 (71)
T 2hin_A 12 DVEKAAVGVGVTPGAVYQWLQA 33 (71)
T ss_dssp SHHHHHHHHTSCHHHHHHHHHH
T ss_pred CHHHHHHHHCCCHHHHHHHHhC
Confidence 4999999999999999999764
No 261
>3nxc_A HTH-type protein SLMA; nucleoid occlusion, cell division, TETR family member, DNA B protein; 2.50A {Escherichia coli}
Probab=68.53 E-value=13 Score=32.34 Aligned_cols=79 Identities=16% Similarity=0.045 Sum_probs=47.1
Q ss_pred HHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHH
Q 011992 290 KEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMK 368 (473)
Q Consensus 290 ~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~k 368 (473)
.+...|..+.| ...|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+..++.
T Consensus 32 aA~~~lf~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 111 (212)
T 3nxc_A 32 SLALMLESSDGSQRITTAKLAASVGVSEAALYRHFPSKTRMFDSLIEFIEDSLITRINLILKDEKDTTARLRLIVLLLLG 111 (212)
T ss_dssp HHHHHHHC------CCHHHHHHHTTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCChhhcCHHHHHHHhCCChhHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 33444656667 67999999999999999998887766666666666665555554444433333444444444443333
No 262
>3dpj_A Transcription regulator, TETR family; APC88616, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; HET: MES; 1.90A {Silicibacter pomeroyi}
Probab=68.39 E-value=45 Score=28.40 Aligned_cols=81 Identities=14% Similarity=0.212 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.....+.+.-+..++..+...+............+..+.+...+-.
T Consensus 12 ~Il~aA~~l~~~~G~~~~t~~~IA~~Agvs~~tly~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 91 (194)
T 3dpj_A 12 QIVAAADELFYRQGFAQTSFVDISAAVGISRGNFYYHFKTKDEILAEVIRLRLARTAQMLADWQGTGDSPRARIASFIDL 91 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHH
Confidence 45566667777778 56899999999999999999888776666667776666655555444443444555555444333
Q ss_pred HH
Q 011992 366 LM 367 (473)
Q Consensus 366 L~ 367 (473)
++
T Consensus 92 ~~ 93 (194)
T 3dpj_A 92 MI 93 (194)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 263
>2ecc_A Homeobox and leucine zipper protein homez; homeobox domain, transcription factor, leucine zipper- containing factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=68.25 E-value=7.6 Score=30.93 Aligned_cols=51 Identities=18% Similarity=0.212 Sum_probs=38.8
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.++.+..+|.-.|..+.. ......+||+.+|+++..|..+......|.|+.
T Consensus 10 fT~~Ql~~Le~~F~~~~YPs~~er~~LA~~tgLte~qIkvWFqNrR~k~Kk~ 61 (76)
T 2ecc_A 10 KTKEQLAILKSFFLQCQWARREDYQKLEQITGLPRPEIIQWFGDTRYALKHG 61 (76)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCcCHHHhhHHhHhhHHHHHHH
Confidence 556666777666653221 445678899999999999999999999888864
No 264
>2hku_A A putative transcriptional regulator; structural genomics, APC6040, TET rhodococcus SP. RHA1, PSI-2, protein structure initiative; HET: PG4; 2.00A {Rhodococcus SP} SCOP: a.4.1.9 a.121.1.1
Probab=68.00 E-value=39 Score=29.56 Aligned_cols=73 Identities=12% Similarity=0.026 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.++..+.|...|..+||+..|++...+.......+.-+..++..+...+............+..+.+
T Consensus 24 ~Il~aA~~lf~~~G~~~s~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 96 (215)
T 2hku_A 24 ALFTAATELFLEHGEGVPITQICAAAGAHPNQVTYYYGSKERLFVEVACAAVLRAGKRAEDDAATAETVGDYT 96 (215)
T ss_dssp HHHHHHHHHHHHHCTTSCHHHHHHHHTCCHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCCHHHHH
T ss_pred HHHHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 4555666666777777899999999999999999988776666666666665544433333222333444433
No 265
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=67.94 E-value=6.6 Score=33.58 Aligned_cols=46 Identities=17% Similarity=0.156 Sum_probs=32.5
Q ss_pred hCCHHHHHHHHHHhhc-cCC-CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L-~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.|-.|+..-+.. +.| ..+|..+||+.+|+|..+|.+++.+-.
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l~~s~~~V~~~l~~Le 76 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERMTVSAAECMEMVRRLL 76 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 4777777665443322 223 448999999999999999998665543
No 266
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=67.89 E-value=4 Score=33.89 Aligned_cols=29 Identities=17% Similarity=0.334 Sum_probs=24.2
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ +..|||+.+|||+.+|+. |+++|..
T Consensus 40 g~~lps~~eLa~~lgVSr~tVr~----al~~L~~ 69 (102)
T 2b0l_A 40 NEGLLVASKIADRVGITRSVIVN----ALRKLES 69 (102)
T ss_dssp TEEEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCcCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4555 999999999999999988 6666765
No 267
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=67.84 E-value=7 Score=32.64 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 24 ~glsq~~lA~~~gis~~~is~~E~g 48 (126)
T 3ivp_A 24 QGLTREQVGAMIEIDPRYLTNIENK 48 (126)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHHS
T ss_pred cCCCHHHHHHHhCcCHHHHHHHHCC
Confidence 7899999999999999999999874
No 268
>3s5r_A Transcriptional regulator TETR family; DNA/RNA-binding 3-helical bundle, tetracyclin repressor-like structural genomics; 2.60A {Syntrophus aciditrophicus}
Probab=67.74 E-value=36 Score=29.44 Aligned_cols=82 Identities=12% Similarity=0.153 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ-GRGISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~-~~~~saEDLiQEg~l 364 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+........ ....+..+.+...+.
T Consensus 14 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (216)
T 3s5r_A 14 LLLDAATTLFAEQGIAATTMAEIAASVGVNPAMIHYYFKTRDSLLDTIIEERIGRIIDMIWEPVTGEEDDPLIMVRDLVN 93 (216)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHTTTCCHHHHHHHCSSHHHHHHHHHHHTHHHHHHHHHTTCCSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhccCCCHHHHHHHHHH
Confidence 45566667777788 5589999999999999999998887767777777777666655554443 334444555544443
Q ss_pred HHHH
Q 011992 365 GLMK 368 (473)
Q Consensus 365 gL~k 368 (473)
.++.
T Consensus 94 ~~~~ 97 (216)
T 3s5r_A 94 RIVN 97 (216)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 269
>1sgm_A Putative HTH-type transcriptional regulator YXAF; structural genomics, PSI, protein structure initiative; 2.00A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=67.55 E-value=26 Score=29.69 Aligned_cols=81 Identities=14% Similarity=0.051 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~-g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~l 364 (473)
+|-++-.++..+.|= ..|..+||+.+|++...+.....+ .+.-+..++......+............+..+.+...+.
T Consensus 10 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 89 (191)
T 1sgm_A 10 KILHTASRLSQLQGYHATGLNQIVKESGAPKGSLYHFFPNGKEELAIEAVTYTGKIVEHLIQQSMDESSDPVEAIQLFIK 89 (191)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCSCHHHHSTTTCHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCCchhHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 455566667777774 589999999999999999988875 666666666666555544444433333444444444443
Q ss_pred HHH
Q 011992 365 GLM 367 (473)
Q Consensus 365 gL~ 367 (473)
.++
T Consensus 90 ~~~ 92 (191)
T 1sgm_A 90 KTA 92 (191)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
No 270
>3g7r_A Putative transcriptional regulator; TETR, all-helical, structural genomics, PSI-2, protein structure initiative; 1.38A {Streptomyces coelicolor A3}
Probab=67.54 E-value=47 Score=29.40 Aligned_cols=84 Identities=7% Similarity=0.050 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+..
T Consensus 39 ~Il~aA~~lf~~~G~~~~t~~~IA~~AGvs~~tlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 118 (221)
T 3g7r_A 39 RLLGTATRIFYAEGIHSVGIDRITAEAQVTRATLYRHFSGKDDLILAYLDQADRGIRAQVTAARGSSPAADGQVRAVARS 118 (221)
T ss_dssp HHHHHHHHHHHHHCSTTSCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 45666677777788 45899999999999999999988877777777777766665555554444455556655555544
Q ss_pred HHHHh
Q 011992 366 LMKSV 370 (473)
Q Consensus 366 L~kAi 370 (473)
++..+
T Consensus 119 ~~~~~ 123 (221)
T 3g7r_A 119 IVDGI 123 (221)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 44443
No 271
>3rd3_A Probable transcriptional regulator; 2.40A {Pseudomonas aeruginosa}
Probab=67.50 E-value=27 Score=29.71 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=58.0
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhc-CCcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG-RGISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~-~~~saEDLiQEg~l 364 (473)
+|-.+-.++..+.|- ..|..+||+..|++...+.......+..+..++..+...+......... ...+..+.+...+.
T Consensus 14 ~Il~aa~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 93 (197)
T 3rd3_A 14 HLLDTGYRIMAVKGFSGVGLNEILQSAGVPKGSFYHYFKSKEQFGQALLEDYFRVYLADMDQRFSAPGLNARERLMSYWQ 93 (197)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCcccCCHHHHHHHhCCChhhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHH
Confidence 455566667777785 5899999999999999998887766666666777666666555555433 33556666655555
Q ss_pred HHHHHhhh
Q 011992 365 GLMKSVEK 372 (473)
Q Consensus 365 gL~kAiek 372 (473)
.++..+..
T Consensus 94 ~~~~~~~~ 101 (197)
T 3rd3_A 94 KWLDNACP 101 (197)
T ss_dssp HHHHHCCT
T ss_pred HHHHHHhc
Confidence 55544433
No 272
>2da4_A Hypothetical protein DKFZP686K21156; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=67.29 E-value=12 Score=29.30 Aligned_cols=48 Identities=8% Similarity=0.118 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhhccCCCC---------CCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDGKP---------KSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~---------lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|...|. .. ....+||..+|+++..|..+......|.|...
T Consensus 15 ft~~Q~~~Le~~F~----~~~~~~~yp~~~~r~~La~~lgL~~~qV~vWFqNrR~k~rk~~ 71 (80)
T 2da4_A 15 FSDRDLATLKKYWD----NGMTSLGSVCREKIEAVATELNVDCEIVRTWIGNRRRKYRLMG 71 (80)
T ss_dssp CCHHHHHHHHHHHT----TTTTCCSHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHH----hCCCCCCCcCHHHHHHHHHHhCCCHHHhhHhHHHHHHHHhhcc
Confidence 56777888887776 33 24578999999999999999999888888743
No 273
>2da1_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=67.13 E-value=9.9 Score=28.85 Aligned_cols=51 Identities=18% Similarity=0.390 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 65 (70)
T 2da1_A 14 ITDDQLRVLRQYFDINNSPSEEQIKEMADKSGLPQKVIKHWFRNTLFKERQS 65 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHCCCCCHHHHHHHHHHhCCCHHHHHHHhhhhhHHHhhh
Confidence 566666777766653322 345678999999999999999998888887754
No 274
>2auw_A Hypothetical protein NE0471; alpha-beta structure, structural genomics, PSI, protein STRU initiative; 1.85A {Nitrosomonas europaea} SCOP: a.35.1.10 d.331.1.1
Probab=67.12 E-value=5.5 Score=36.50 Aligned_cols=33 Identities=15% Similarity=0.173 Sum_probs=27.6
Q ss_pred HHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 415 CIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 415 ~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+-.+|-. .++|++|+|+.+|||+.+|+++++-
T Consensus 94 ~lk~lR~~----~glTQ~elA~~LGvsr~tis~yE~G 126 (170)
T 2auw_A 94 MFGDWMHR----NNLSLTTAAEALGISRRMVSYYRTA 126 (170)
T ss_dssp HHHHHHHH----TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred HHHHHHHH----cCCCHHHHHHHhCCCHHHHHHHHcC
Confidence 34455655 7899999999999999999998874
No 275
>3mvp_A TETR/ACRR transcriptional regulator; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 1.85A {Streptococcus mutans}
Probab=67.08 E-value=40 Score=29.06 Aligned_cols=73 Identities=16% Similarity=0.018 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhH
Q 011992 286 IRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDL 358 (473)
Q Consensus 286 ~kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDL 358 (473)
.+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+............+.+++
T Consensus 29 ~~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 102 (217)
T 3mvp_A 29 NKILQVAKDLFSDKTYFNVTTNEIAKKADVSVGTLYAYFASKEDILTALLKRYNDFFLTTIFADINSQDSLDRF 102 (217)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHTHHHHSSHHHHHHH
T ss_pred HHHHHHHHHHHHHcCccccCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHH
Confidence 356666677777788 5799999999999999999998877667777777766655553333333333333333
No 276
>3trb_A Virulence-associated protein I; mobIle and extrachromosomal element functions, DNA binding P; 2.00A {Coxiella burnetii}
Probab=67.07 E-value=8.4 Score=31.83 Aligned_cols=25 Identities=12% Similarity=0.232 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|+|+.+|||.++|+++++.
T Consensus 26 ~gltq~eLA~~lGis~~~is~ie~G 50 (104)
T 3trb_A 26 DKMSANQLAKHLAIPTNRVTAILNG 50 (104)
T ss_dssp TSCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999999874
No 277
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=67.05 E-value=7.4 Score=33.28 Aligned_cols=46 Identities=22% Similarity=0.312 Sum_probs=36.0
Q ss_pred HhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 011992 406 LTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 453 (473)
Q Consensus 406 L~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG----IS~~rVrqi~~RAL 453 (473)
+..|++.|..|+..-+. .+.+.|..||++.++ ++.++|..++.+-.
T Consensus 4 ~~~lt~~e~~vL~~L~~--~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWS--RTEPQTVRQVHEALSARRDLAYTTVMAVLQRLA 53 (138)
T ss_dssp GGGCCHHHHHHHHHHHT--CSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred cccCCHHHHHHHHHHHh--cCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHH
Confidence 35799999998876653 125799999999998 89999998766543
No 278
>1g2h_A Transcriptional regulatory protein TYRR homolog; protein structure, , DNA-binding domain, helix- turn-helix motif; NMR {Haemophilus influenzae} SCOP: a.4.1.12
Probab=66.99 E-value=5.7 Score=29.70 Aligned_cols=38 Identities=13% Similarity=0.202 Sum_probs=26.5
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+.+-|+.+|...+. ..-+..+.|+.||||+.++...+.
T Consensus 18 l~~~Er~~I~~aL~----~~gn~~~aA~~LGIsr~tL~rklk 55 (61)
T 1g2h_A 18 IGFYEAQVLKLFYA----EYPSTRKLAQRLGVSHTAIANKLK 55 (61)
T ss_dssp CSHHHHHHHHHHHH----HSCSHHHHHHHTTSCTHHHHHHHH
T ss_pred HHHHHHHHHHHHHH----HhCCHHHHHHHhCCCHHHHHHHHH
Confidence 44556666654443 224788999999999999876544
No 279
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=66.61 E-value=7.2 Score=34.04 Aligned_cols=48 Identities=15% Similarity=0.001 Sum_probs=35.9
Q ss_pred hCCHHHHHHHHHHhhc-cCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 455 (473)
Q Consensus 408 ~LperER~VL~LrY~L-~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~K 455 (473)
.|++.|-.++...+.+ +.| .++|..+||+.||++...|.+++.+-++|
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~~~s~~~v~~~L~~L~~K 78 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGMSISVEECTNRLRMFIQK 78 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHCcCHHHHHHHHHHHHHC
Confidence 5888888776544433 333 66899999999999999998877665543
No 280
>3lhq_A Acrab operon repressor (TETR/ACRR family); structural genomics, IDP02616, csgid, DNA-binding, transcription, transcription regulation; 1.56A {Salmonella enterica subsp} PDB: 3bcg_A 2qop_A
Probab=66.38 E-value=54 Score=28.13 Aligned_cols=82 Identities=15% Similarity=0.097 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh-hcCCcchhhHhhhhH
Q 011992 286 IRLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY-QGRGISLHDLLQEGS 363 (473)
Q Consensus 286 ~kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry-~~~~~saEDLiQEg~ 363 (473)
.+|-.+-.++..+.|- ..|..+||+..|++...+.......+..+..++..+...+....... .....+..+.+...+
T Consensus 17 ~~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (220)
T 3lhq_A 17 QHILDVALRLFSQQGVSATSLAEIANAAGVTRGAIYWHFKNKSDLFSEIWELSESNIGELEIEYQAKFPDDPLSVLREIL 96 (220)
T ss_dssp HHHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCcccCCHHHHHHHhCCCceeehhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHH
Confidence 3566666777777784 48999999999999999999888777777777777666554444322 222334444444443
Q ss_pred HHHH
Q 011992 364 MGLM 367 (473)
Q Consensus 364 lgL~ 367 (473)
..++
T Consensus 97 ~~~~ 100 (220)
T 3lhq_A 97 VHIL 100 (220)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 281
>3qwg_A ESX-1 secretion-associated regulator ESPR; N-terminal helix-turn-helix motif, transcription factor, transcription; 1.99A {Mycobacterium tuberculosis} PDB: 3qf3_A 3qyx_A
Probab=65.86 E-value=4.3 Score=34.83 Aligned_cols=26 Identities=27% Similarity=0.286 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFG-----LSKERVRQLES 450 (473)
Q Consensus 425 ~ge~lTlkEIAe~LG-----IS~~rVrqi~~ 450 (473)
++.++|++|+|+.+| ||.+.|+++++
T Consensus 21 ~~~~lT~~elA~~~~~~G~~iS~s~is~iE~ 51 (123)
T 3qwg_A 21 GRGPHTSAEVIAALKAEGITMSAPYLSQLRS 51 (123)
T ss_dssp TTCSCCHHHHHHHHHHTTCCCCHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHcccCCCcCHHHHHHHHc
Confidence 346899999999998 99999999986
No 282
>2cw1_A SN4M; lambda CRO fold, de novo protein; NMR {Synthetic} SCOP: k.46.1.1
Probab=65.77 E-value=4.2 Score=31.30 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=21.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+..|+.++|+.||||..+|++++.
T Consensus 12 ~~~sq~~~A~~Lgvsq~aVS~~~~ 35 (65)
T 2cw1_A 12 EDKNQEYAARALGLSQKLIEEVLK 35 (65)
T ss_dssp TTSCHHHHHHHSSSCHHHHHHHHH
T ss_pred HHcCHHHHHHHhCCCHHHHHHHHH
Confidence 345999999999999999999874
No 283
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=65.61 E-value=7 Score=32.99 Aligned_cols=25 Identities=32% Similarity=0.381 Sum_probs=21.9
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 426 ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
++..|.+|||+.+|+|+..|++++.
T Consensus 24 ~~~~s~~ela~~~~i~~~~v~~il~ 48 (129)
T 2y75_A 24 EGPTSLKSIAQTNNLSEHYLEQLVS 48 (129)
T ss_dssp SCCBCHHHHHHHTTSCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHCcCHHHHHHHHH
Confidence 4679999999999999999988544
No 284
>3f52_A CLP gene regulator (CLGR); helix-turn-helix motif, transcriptional ACTI human pathogen, transcription activator; 1.75A {Corynebacterium glutamicum} PDB: 3f51_A
Probab=64.83 E-value=5.2 Score=32.96 Aligned_cols=25 Identities=24% Similarity=0.240 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 40 ~glsq~~lA~~~gis~~~is~~E~g 64 (117)
T 3f52_A 40 KGVTLRELAEASRVSPGYLSELERG 64 (117)
T ss_dssp HTCCHHHHHHHTTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 5799999999999999999999864
No 285
>2qwt_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative; 2.30A {Mycobacterium vanbaalenii pyr-1}
Probab=64.80 E-value=53 Score=28.40 Aligned_cols=57 Identities=12% Similarity=0.112 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~s 343 (473)
+|-.+-.++..+.|-.-|..+||+.+|++...+.......+.-+..++..+...+..
T Consensus 17 ~Il~aA~~lf~~~G~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~ 73 (196)
T 2qwt_A 17 RVLEVAYDTFAAEGLGVPMDEIARRAGVGAGTVYRHFPTKQALVVAVAEDRVRRIVD 73 (196)
T ss_dssp HHHHHHHHHHHHTCTTSCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 566667777778887789999999999999999988877666666666655544433
No 286
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=64.72 E-value=12 Score=29.67 Aligned_cols=26 Identities=0% Similarity=0.086 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
...+..|||+.||||+.+|+..+.+-
T Consensus 15 g~vsv~eLa~~l~VS~~TIRrdL~~L 40 (78)
T 1xn7_A 15 GRMEAAQISQTLNTPQPMINAMLQQL 40 (78)
T ss_dssp CSBCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHHH
Confidence 67899999999999999999876553
No 287
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=64.72 E-value=24 Score=30.91 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+. ++++|++
T Consensus 167 ~~t~~~iA~~lg~sr~tvsR----~l~~L~~ 193 (210)
T 3ryp_A 167 KITRQEIGQIVGCSRETVGR----ILKMLED 193 (210)
T ss_dssp ECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred ccCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 57999999999999999987 4555554
No 288
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=64.48 E-value=7.3 Score=32.19 Aligned_cols=44 Identities=18% Similarity=0.205 Sum_probs=34.9
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 453 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG----IS~~rVrqi~~RAL 453 (473)
..|++.|..|+..-+. ..+.|..|||+.++ ++.++|..++.+-.
T Consensus 6 ~~Lt~~q~~vL~~L~~---~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe 53 (126)
T 1sd4_A 6 VEISMAEWDVMNIIWD---KKSVSANEIVVEIQKYKEVSDKTIRTLITRLY 53 (126)
T ss_dssp CCCCHHHHHHHHHHHH---SSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHh---cCCCCHHHHHHHHhhcCCCChhhHHHHHHHHH
Confidence 3689999988876664 25799999999997 58999998776643
No 289
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=64.03 E-value=19 Score=30.21 Aligned_cols=40 Identities=10% Similarity=0.090 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhc
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSG 326 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g 326 (473)
.+.++..-+.+.++..++.+++|+.+|++...|.+.++..
T Consensus 12 ~i~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 12 TIHSILDWIEDNLESPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp HHHHHHHHHHTTTTSCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 3555666677778888999999999999999999888763
No 290
>2gen_A Probable transcriptional regulator; APC6095, TETR family, structural genomics, PSI, protein structure initiative; 1.70A {Pseudomonas aeruginosa PAO1} SCOP: a.4.1.9 a.121.1.1
Probab=64.02 E-value=47 Score=28.79 Aligned_cols=59 Identities=14% Similarity=0.060 Sum_probs=44.5
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA 345 (473)
+|-.+-.+|..+.|= .-|..+||+..|++...+.......+.-+..++..+...+....
T Consensus 11 ~Il~aA~~lf~~~G~~~ts~~~IA~~aGvs~gtlY~~F~sKe~L~~av~~~~~~~~~~~~ 70 (197)
T 2gen_A 11 EILQAALACFSEHGVDATTIEMIRDRSGASIGSLYHHFGNKERIHGELYLAGIGQYAALL 70 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHCCCHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHH
Confidence 455666677777784 67899999999999999999888777777777776665544433
No 291
>3cec_A Putative antidote protein of plasmid maintenance; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.60A {Nostoc punctiforme}
Probab=63.88 E-value=6.2 Score=31.84 Aligned_cols=25 Identities=12% Similarity=0.300 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 30 ~gltq~~lA~~~gis~~~is~~e~g 54 (104)
T 3cec_A 30 LDINTANFAEILGVSNQTIQEVING 54 (104)
T ss_dssp HTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 5799999999999999999999874
No 292
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=63.83 E-value=4.8 Score=35.61 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=27.4
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+....||.+-.. .+++..|||+.+|+|.++|++.++.
T Consensus 58 p~R~~IL~~L~~----~~~t~~eLa~~lgls~stvs~hL~~ 94 (151)
T 3f6v_A 58 PTRRRLVQLLTS----GEQTVNNLAAHFPASRSAISQHLRV 94 (151)
T ss_dssp HHHHHHHHHGGG----CCEEHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 444445544333 6799999999999999999986543
No 293
>1yz8_P Pituitary homeobox 2; DNA binding protein, transcription/DNA complex; NMR {Homo sapiens} SCOP: a.4.1.1 PDB: 2l7f_P 2lkx_A* 2l7m_P
Probab=63.73 E-value=20 Score=26.97 Aligned_cols=53 Identities=11% Similarity=0.071 Sum_probs=40.3
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..-.
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk~~~ 63 (68)
T 1yz8_P 10 FTSQQLQQLEATFQRNRYPDMSTREEIAVWTNLTEARVRVWFKNRRAKWRKREE 63 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCTTTTTHHHHHTTSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhHHHHHHhh
Confidence 566777788777763322 34456799999999999999999888888876543
No 294
>2jvl_A TRMBF1; coactivator, helix-turn-helix, Pro binding, transcription; NMR {Trichoderma reesei}
Probab=63.69 E-value=6.5 Score=32.37 Aligned_cols=25 Identities=20% Similarity=0.272 Sum_probs=23.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+++++.
T Consensus 48 ~glsq~elA~~~gis~~~is~~E~G 72 (107)
T 2jvl_A 48 PTMTQAELGKEIGETAATVASYERG 72 (107)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999998863
No 295
>1vi0_A Transcriptional regulator; structural genomics; HET: MSE DCC; 1.65A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=63.67 E-value=45 Score=29.24 Aligned_cols=73 Identities=8% Similarity=0.092 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.+|..+.|= .-|..+||+..|++...+.......+.-+..++..+...+............+..+-+
T Consensus 12 ~Il~aA~~lf~~~Gy~~~s~~~IA~~AGvs~gt~Y~yF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (206)
T 1vi0_A 12 QIIDAAVEVIAENGYHQSQVSKIAKQAGVADGTIYLYFKNKEDILISLFKEKMGQFIERMEEDIKEKATAKEKL 85 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTTCCSHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 455666677777784 5899999999999999999988877777777777766655554444433333433333
No 296
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=63.53 E-value=6.4 Score=32.81 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=23.7
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |..++|+.+|||+.+|+. |+..|..
T Consensus 30 G~~lPs~~~La~~~~vSr~tvr~----al~~L~~ 59 (113)
T 3tqn_A 30 GEMIPSIRKISTEYQINPLTVSK----AYQSLLD 59 (113)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3555 999999999999999987 6666654
No 297
>3mnl_A KSTR, transcriptional regulatory protein (probably TETR; TETR family of transcriptional regulator, all-helical; 1.80A {Mycobacterium tuberculosis}
Probab=63.45 E-value=23 Score=30.43 Aligned_cols=81 Identities=11% Similarity=-0.019 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.+|..+.|= ..|..+||+..|++...+.......+..+..++..+...+............+..+.+...+..
T Consensus 24 ~Il~aA~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 103 (203)
T 3mnl_A 24 RILDATMAIASKGGYEAVQMRAVADRADVAVGTLYRYFPSKVHLLVSALGREFSRIDAKTDRSAVAGATPFQRLNFMVGK 103 (203)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHCCCGGGTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHcCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 455566666667774 4899999999999999999888776666666666665544433332233344444444444433
Q ss_pred HH
Q 011992 366 LM 367 (473)
Q Consensus 366 L~ 367 (473)
++
T Consensus 104 ~~ 105 (203)
T 3mnl_A 104 LN 105 (203)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 298
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=63.36 E-value=7.9 Score=33.13 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.|+|++|+|+.+|+|.++|+++++.-
T Consensus 15 ~gltq~elA~~~gis~~~is~iE~g~ 40 (130)
T 3fym_A 15 LGMTLTELEQRTGIKREMLVHIENNE 40 (130)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHTTC
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCCC
Confidence 78999999999999999999998753
No 299
>1rzs_A Antirepressor, regulatory protein CRO; helix-turn-helix, DNA-binding protein, structural evolution, transcription; NMR {Enterobacteria phage P22} SCOP: a.35.1.2
Probab=63.30 E-value=4 Score=30.43 Aligned_cols=21 Identities=24% Similarity=0.357 Sum_probs=19.7
Q ss_pred CCHHHHHHHHCCCHHHHHHHH
Q 011992 429 KSLSEVGNIFGLSKERVRQLE 449 (473)
Q Consensus 429 lTlkEIAe~LGIS~~rVrqi~ 449 (473)
.|..++|+.+|||.++|+++.
T Consensus 11 ~tq~~lA~~lGvs~~~Vs~we 31 (61)
T 1rzs_A 11 GTQRAVAKALGISDAAVSQWK 31 (61)
T ss_dssp SSHHHHHHHHTCCHHHHHHCC
T ss_pred CCHHHHHHHhCCCHHHHHHHH
Confidence 599999999999999999985
No 300
>1ahd_P Antennapedia protein mutant; DNA binding protein/DNA; HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 2hoa_A 1hom_A 1ftz_A
Probab=63.17 E-value=25 Score=26.60 Aligned_cols=54 Identities=7% Similarity=0.084 Sum_probs=40.5
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|.....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk~~~~ 63 (68)
T 1ahd_P 9 YTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKKENKT 63 (68)
T ss_dssp CCHHHHHHHHHHHHHCSSCCTTHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHSCC
T ss_pred cCHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHhhhhHHhHHHHhHHhHhccc
Confidence 566667777776653322 445678999999999999999999888888876543
No 301
>3on4_A Transcriptional regulator, TETR family; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics; HET: MSE; 1.85A {Legionella pneumophila subsp}
Probab=63.14 E-value=49 Score=27.84 Aligned_cols=75 Identities=15% Similarity=0.155 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCC-cchhhHhhh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG-ISLHDLLQE 361 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~-~saEDLiQE 361 (473)
+|-.+-.++..+.|- ..|..+||+..|++...+.......+.-+..++..+...+........... .+..+.+..
T Consensus 14 ~Il~aa~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (191)
T 3on4_A 14 RILAVAEALIQKDGYNAFSFKDIATAINIKTASIHYHFPSKEDLGVAVISWHTDKIAAVLSDISNNSSLSAKEKIQK 90 (191)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHTCTTSCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCcchhhhcCCCHHHHHHHHHHHHHHHHHHHHHhhhccccCCHHHHHHH
Confidence 355555666677785 489999999999999999999887777777777777666666555554444 455444433
No 302
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=63.04 E-value=6.4 Score=33.74 Aligned_cols=29 Identities=24% Similarity=0.409 Sum_probs=24.3
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |..++|+.||||+.+|+. |+..|..
T Consensus 35 G~~LPser~La~~~gVSr~tVRe----Al~~L~~ 64 (134)
T 4ham_A 35 GEKILSIREFASRIGVNPNTVSK----AYQELER 64 (134)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCccHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 4666 899999999999999988 7777764
No 303
>2dmq_A LIM/homeobox protein LHX9; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=62.93 E-value=13 Score=28.89 Aligned_cols=54 Identities=17% Similarity=0.245 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|.....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~~ 68 (80)
T 2dmq_A 14 FKHHQLRTMKSYFAINHNPDAKDLKQLAQKTGLTKRVLQVWFQNARAKFRRNLLR 68 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCCCHHHhhHccHHHHHHHHHHHHH
Confidence 456666667666652211 223467899999999999999999988888876543
No 304
>3mky_B Protein SOPB; partition, F plasmid, centromere, DNA binding protein- complex; HET: DNA; 2.86A {Escherichia coli} PDB: 3mkw_B* 3mkz_A*
Probab=62.66 E-value=12 Score=34.98 Aligned_cols=49 Identities=10% Similarity=0.050 Sum_probs=35.0
Q ss_pred HHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 403 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 403 ~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
...-.-|+..||-.-.+++ |+.|...+.+++|+.+|||+..|+..+.-|
T Consensus 18 ~N~~rplS~yErg~~y~r~-L~~g~~~~Q~~lA~~~giS~a~VSR~L~~A 66 (189)
T 3mky_B 18 GSHYRPTSAYERGQRYASR-LQNEFAGNISALADAENISRKIITRCINTA 66 (189)
T ss_dssp -----CCCHHHHHHHHHHH-HHTTTTTCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred cccCCCCCHHHHHHHHHHH-HhcCcccCHHHHHHHHCCCHHHHHHHHHHh
Confidence 3344557777776655555 466678999999999999999998877655
No 305
>2eby_A Putative HTH-type transcriptional regulator YBAQ; hypothetical protein, JW0472, structural genomics, NPPSFA; 2.25A {Escherichia coli}
Probab=62.60 E-value=6.7 Score=32.05 Aligned_cols=25 Identities=12% Similarity=0.263 Sum_probs=23.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..++|+.+|||.++|+.+++.
T Consensus 23 ~glsq~~lA~~~gis~~~is~~e~g 47 (113)
T 2eby_A 23 LDLKINELAELLHVHRNSVSALINN 47 (113)
T ss_dssp TTCCHHHHHHHHTSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 7899999999999999999999864
No 306
>3lfp_A CSP231I C protein; transcriptional regulator, DNA binding protein, helix-turn-H restriction-modification, transcription; 2.00A {Citrobacter SP} PDB: 3lis_A
Probab=62.26 E-value=7.9 Score=30.86 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHH----HHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKER----VRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~r----Vrqi~~R 451 (473)
.++|..|+|+.+|||.++ |+++++.
T Consensus 13 ~glsq~~lA~~~gis~~~~~~~is~~E~g 41 (98)
T 3lfp_A 13 AGISQEKLGVLAGIDEASASARMNQYEKG 41 (98)
T ss_dssp HTCCHHHHHHHTTCCHHHHHHHHHHHHHT
T ss_pred cCCCHHHHHHHhCCCcchhhhHHHHHHCC
Confidence 579999999999999999 8888765
No 307
>1pb6_A Hypothetical transcriptional regulator YCDC; helix-loop-helix, dimer, structural genomics, PSI, protein structure initiative; 2.50A {Escherichia coli} PDB: 3loc_A*
Probab=62.19 E-value=75 Score=27.22 Aligned_cols=60 Identities=20% Similarity=0.145 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ 346 (473)
+|-++-.++..+.| ...|..+||+..|++...+.......+.-+..++..+...+.....
T Consensus 22 ~Il~aa~~l~~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~ 82 (212)
T 1pb6_A 22 AILSAALDTFSQFGFHGTRLEQIAELAGVSKTNLLYYFPSKEALYIAVLRQILDIWLAPLK 82 (212)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTSCHHHHHHHSSSHHHHHHHHHHHHHHHHTHHHH
T ss_pred HHHHHHHHHHHHcCcchhhHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55666667777778 5688999999999999999998887777777777776665554444
No 308
>2bnm_A Epoxidase; oxidoreductase, cupin, HTH, cation-dependant, zinc, fosfomycin; 1.7A {Streptomyces wedmorensis} SCOP: a.35.1.3 b.82.1.10 PDB: 1zz7_A 1zz8_A 1zz9_A 1zzb_A 1zz6_A 1zzc_A 2bnn_A 2bno_A 3scf_A 3scg_A 3sch_A
Probab=62.13 E-value=7.9 Score=34.68 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|++|+|+.+|||.++|+++++.
T Consensus 22 ~g~s~~~la~~~gis~~~ls~~e~g 46 (198)
T 2bnm_A 22 VKMDHAALASLLGETPETVAAWENG 46 (198)
T ss_dssp TTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999874
No 309
>3k2a_A Homeobox protein MEIS2; homeobox domain, DNA-binding, transcription, nucleus, phosphoprotein, DNA bindi protein; 1.95A {Homo sapiens} SCOP: a.4.1.1
Probab=62.09 E-value=8.2 Score=29.45 Aligned_cols=55 Identities=15% Similarity=0.059 Sum_probs=38.5
Q ss_pred hCCHHHHHHHHHHhh---ccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 408 LLNPKERCIVRLRFG---IEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 408 ~LperER~VL~LrY~---L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
.+|..+..+|.-.|. -+.. ....-.+||..+|++...|..+......+++..+..
T Consensus 4 ~f~~~~~~~L~~~f~~h~~~pyp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~ 62 (67)
T 3k2a_A 4 IFPKVATNIMRAWLFQHLTHPYPSEEQKKQLAQDTGLTILQVNNWFINARRRIVQPMID 62 (67)
T ss_dssp --CHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHSCC--
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHhCcCHHHhhhhhHHHHHHHhHHHHH
Confidence 467788888877665 1111 122367899999999999999999999998865443
No 310
>2v57_A TETR family transcriptional repressor LFRR; DNA-binding, transcription regulation; HET: PRL; 1.90A {Mycobacterium smegmatis} PDB: 2wgb_A
Probab=61.97 E-value=49 Score=28.06 Aligned_cols=70 Identities=9% Similarity=-0.006 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhh
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHD 357 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saED 357 (473)
+|-.+-.++..+. ...|..+||+.+|++...+.......+.-+..++..+...+............+..+
T Consensus 18 ~Il~aA~~lf~~~-~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (190)
T 2v57_A 18 AILDAAMLVLADH-PTAALGDIAAAAGVGRSTVHRYYPERTDLLRALARHVHDLSNAAIERADPTSGPVDA 87 (190)
T ss_dssp HHHHHHHHHHTTC-TTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHCTTSSCHHH
T ss_pred HHHHHHHHHHHHc-CCCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHH
Confidence 3444444444444 889999999999999999998887766666666666665554444443333333333
No 311
>1rr7_A Middle operon regulator; MOR, transcription; 2.20A {Enterobacteria phage MU} SCOP: a.4.1.14
Probab=61.93 E-value=14 Score=31.98 Aligned_cols=39 Identities=18% Similarity=0.186 Sum_probs=31.2
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 455 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~K 455 (473)
.|.+.|... | .|.+..|+|..+|+|..+|++|+++..+.
T Consensus 81 ~Rn~~I~~~-f-----~G~n~~eLArkYgLSer~I~~Ii~~~r~~ 119 (129)
T 1rr7_A 81 IRDLRIWND-F-----NGRNVSELTTRYGVTFNTVYKAIRRMRRL 119 (129)
T ss_dssp HHHHHHHHH-C-----CSSCHHHHHHHHTCCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHH-h-----CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456666654 3 47899999999999999999999876653
No 312
>1puf_B PRE-B-cell leukemia transcription factor-1; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Homo sapiens} SCOP: a.4.1.1 PDB: 1b8i_B* 2r5y_B* 2r5z_B*
Probab=61.78 E-value=14 Score=28.20 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.4
Q ss_pred hCCHHHHHHHHHHh---hccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCc
Q 011992 408 LLNPKERCIVRLRF---GIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGKA 464 (473)
Q Consensus 408 ~LperER~VL~LrY---~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~~ 464 (473)
.+++.+..+|.-.| ..+.. ......+||..+|+++..|..+......+.|.......
T Consensus 7 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~~~ 67 (73)
T 1puf_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKFQ 67 (73)
T ss_dssp CCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCTTTTT
T ss_pred cCCHHHHHHHHHHHHHhccCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhccccccccc
Confidence 36777778887777 21110 12245688999999999999999999999988665543
No 313
>1j1v_A Chromosomal replication initiator protein DNAA, 5'-D(*CP*CP*TP*GP*TP*GP*GP*AP*TP*AP*AP*CP*A)-3'; protein-DNA complex; 2.10A {Escherichia coli} SCOP: a.4.12.2
Probab=61.68 E-value=22 Score=29.11 Aligned_cols=29 Identities=24% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIF-GLSKERVRQLESRALYR 455 (473)
Q Consensus 427 e~lTlkEIAe~L-GIS~~rVrqi~~RAL~K 455 (473)
-++|+.+||+.+ |...+||.....+.-+.
T Consensus 45 t~~Sl~~IG~~fggrdHsTV~ha~~ki~~~ 74 (94)
T 1j1v_A 45 TNHSLPEIGDAFGGRDHTTVLHACRKIEQL 74 (94)
T ss_dssp SCCCHHHHHHHTTSCCHHHHHHHHHHHHHH
T ss_pred HCcCHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 689999999999 89999999855544433
No 314
>3eup_A Transcriptional regulator, TETR family; structural genomics, MCSG, protein structure initiative, midwest center for STRU genomics; 1.99A {Cytophaga hutchinsonii}
Probab=61.55 E-value=42 Score=28.63 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.++..+.|- ..|..+||+..|++...+.......+.-+..++..+...+............+..+.+...+..
T Consensus 15 ~Il~aA~~lf~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 94 (204)
T 3eup_A 15 FIIESTAPVFNVKGLAGTSLTDLTEATNLTKGSIYGNFENKEAVAIAAFDYNWGHVKSVLTAKVQACNTYKEMLLVYSSM 94 (204)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHTTTSSSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCcHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 444555556666663 4799999999999999998887776677777777776665555555444444555555444443
Q ss_pred HHH
Q 011992 366 LMK 368 (473)
Q Consensus 366 L~k 368 (473)
++.
T Consensus 95 ~~~ 97 (204)
T 3eup_A 95 YND 97 (204)
T ss_dssp HHG
T ss_pred HHH
Confidence 333
No 315
>2hyt_A TETR-family transcriptional regulator; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.64A {Pectobacterium atrosepticum}
Probab=61.50 E-value=59 Score=28.08 Aligned_cols=60 Identities=10% Similarity=0.043 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAK 346 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ 346 (473)
+|-.+-.+|..+.| ..-|..+||+..|++...+.....+.+.-+..++..+...+.....
T Consensus 16 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~tlY~~F~sKe~L~~av~~~~~~~~~~~~~ 76 (197)
T 2hyt_A 16 TLLATARKVFSERGYADTSMDDLTAQASLTRGALYHHFGDKKGLLAAVVEQIDAEMDERLQ 76 (197)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCTTHHHHHHSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 46666677777888 5688999999999999999998887777777777776665544433
No 316
>2kfs_A Conserved hypothetical regulatory protein; WHTH, DNA binding, phosphorylation, DNA-binding protein; NMR {Mycobacterium tuberculosis}
Probab=61.50 E-value=4.2 Score=36.55 Aligned_cols=25 Identities=20% Similarity=0.316 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+-+|..|+|+.|||++++|+++++.
T Consensus 30 ~~LTv~EVAe~LgVs~srV~~LIr~ 54 (148)
T 2kfs_A 30 PTYDLPRVAELLGVPVSKVAQQLRE 54 (148)
T ss_dssp CEEEHHHHHHHHTCCHHHHHHHHHT
T ss_pred ceEcHHHHHHHhCCCHHHHHHHHHC
Confidence 5689999999999999999998764
No 317
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=61.39 E-value=3.8 Score=38.39 Aligned_cols=43 Identities=19% Similarity=0.199 Sum_probs=32.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCH--HHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSL--SEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTl--kEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.+..++..-|.+.. ++.+. .+||+.||++.++|+.++.+
T Consensus 3 ~lt~~~e~~L~~L~~l~~-~~~~~~~~~La~~l~vs~~tvs~~l~~ 47 (230)
T 1fx7_A 3 ELVDTTEMYLRTIYDLEE-EGVTPLRARIAERLDQSGPTVSQTVSR 47 (230)
T ss_dssp TTSSHHHHHHHHHHHHHH-HTSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh-cCCCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 577777777766655432 24555 99999999999999986554
No 318
>3q0w_A HTH-type transcriptional regulator EThr; TETR family, transcriptional repressor, transcription-transc inhibitor complex; HET: LL5; 1.60A {Mycobacterium tuberculosis} PDB: 3o8g_A* 3o8h_A* 3q0u_A* 3q0v_A* 3g1m_A* 3q3s_A* 3sdg_A* 3sfi_A* 1u9n_A* 1u9o_A* 3tp3_A 3qpl_A 3g1l_A* 1t56_A 3tp0_A*
Probab=61.38 E-value=49 Score=29.62 Aligned_cols=82 Identities=10% Similarity=0.053 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCC--cchhhHhhhhH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG--ISLHDLLQEGS 363 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~--~saEDLiQEg~ 363 (473)
+|-++-.+|..+.|- ..|..+||+++|++...+.......+..+..++..+...+........... .+..+.+...+
T Consensus 48 ~Il~aA~~lf~e~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (236)
T 3q0w_A 48 AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGI 127 (236)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHSCCSSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCcHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHH
Confidence 455666677777775 689999999999999999998887777777777777666665555543332 25555554444
Q ss_pred HHHHH
Q 011992 364 MGLMK 368 (473)
Q Consensus 364 lgL~k 368 (473)
..++.
T Consensus 128 ~~~~~ 132 (236)
T 3q0w_A 128 NVFFE 132 (236)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 43333
No 319
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=61.23 E-value=14 Score=29.97 Aligned_cols=26 Identities=27% Similarity=0.316 Sum_probs=24.1
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+++++.+||+.+|+|+.++..+.++.
T Consensus 20 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 45 (108)
T 3oou_A 20 EGMSLKTLGNDFHINAVYLGQLFQKE 45 (108)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 78999999999999999999988776
No 320
>3bni_A Putative TETR-family transcriptional regulator; structural genomics, APC7281; HET: PG4; 2.30A {Streptomyces coelicolor A3}
Probab=61.18 E-value=89 Score=27.74 Aligned_cols=85 Identities=9% Similarity=-0.006 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHHHhCCC-CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhc--CCcchhhHhhhh
Q 011992 286 IRLEKEKSKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG--RGISLHDLLQEG 362 (473)
Q Consensus 286 ~kle~a~~~L~~~lGRe-PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~--~~~saEDLiQEg 362 (473)
.+|-++-.+|..+.|-. .|..+||+.+|++...+.......+..+..++..+...+......... ...+..+.+...
T Consensus 46 ~~Il~aA~~l~~~~G~~~~tv~~IA~~AGvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 125 (229)
T 3bni_A 46 TRILDACADLLDEVGYDALSTRAVALRADVPIGSVYRFFGNKRQMADALAQRNLERYAERVTERLTEAGDGGWRGALDTV 125 (229)
T ss_dssp HHHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhcChhhccHHHHHHHHCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHH
Confidence 35666667777777855 899999999999999999988877777777777766655544443322 334555555555
Q ss_pred HHHHHHHh
Q 011992 363 SMGLMKSV 370 (473)
Q Consensus 363 ~lgL~kAi 370 (473)
+..++..+
T Consensus 126 ~~~~~~~~ 133 (229)
T 3bni_A 126 LDEYLAMK 133 (229)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
No 321
>1jgg_A Segmentation protein EVEN-skipped; homeodomain, protein-DNA complex, transcription/DNA complex; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1
Probab=61.10 E-value=15 Score=27.00 Aligned_cols=50 Identities=10% Similarity=0.062 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|.
T Consensus 8 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 58 (60)
T 1jgg_A 8 FTRDQLGRLEKEFYKENYVSRPRRCELAAQLNLPESTIKVWFQNRRMKDKR 58 (60)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHhhHHHHhHhhc
Confidence 566677777777653221 22346789999999999999999888777664
No 322
>1ig7_A Homeotic protein MSX-1; helix-turn-helix, transcription/DNA complex; 2.20A {Mus musculus} SCOP: a.4.1.1
Probab=61.04 E-value=14 Score=26.78 Aligned_cols=50 Identities=10% Similarity=0.106 Sum_probs=35.9
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|.-.|..+.. ......+||..+|+++..|..+...-..+.|.
T Consensus 7 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr 57 (58)
T 1ig7_A 7 FTTAQLLALERKFRQKQYLSIAERAEFSSSLSLTETQVKIWFQNRRAKAKR 57 (58)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHHCcCHHHhhhhhhHhhhhhcc
Confidence 566677777777753221 22245688999999999999999887777664
No 323
>1y9q_A Transcriptional regulator, HTH_3 family; transcriptional regulaator, strucutral genomics, protein structure initiative, PSI; 1.90A {Vibrio cholerae} SCOP: a.35.1.8 b.82.1.15
Probab=60.91 E-value=8.3 Score=34.47 Aligned_cols=25 Identities=28% Similarity=0.379 Sum_probs=23.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+++|+.+|||.++|+++++.
T Consensus 23 ~gltq~~lA~~~gis~~~is~~e~g 47 (192)
T 1y9q_A 23 RGLSLDATAQLTGVSKAMLGQIERG 47 (192)
T ss_dssp TTCCHHHHHHHHSSCHHHHHHHHTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6899999999999999999999864
No 324
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=60.87 E-value=12 Score=34.72 Aligned_cols=27 Identities=11% Similarity=0.213 Sum_probs=23.4
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.+.+..+||+.||++.++|+.++.+
T Consensus 17 ~~~~~~~~~lA~~l~vs~~tvs~~l~~ 43 (214)
T 3hrs_A 17 RHNKITNKEIAQLMQVSPPAVTEMMKK 43 (214)
T ss_dssp SCSCCCHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCcCHHHHHHHHCCChhHHHHHHHH
Confidence 357899999999999999999986554
No 325
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=60.81 E-value=7.5 Score=33.19 Aligned_cols=29 Identities=17% Similarity=0.122 Sum_probs=23.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ +..++|+.+|||+.+|+. |+..|..
T Consensus 32 G~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 61 (126)
T 3by6_A 32 NDQLPSVRETALQEKINPNTVAK----AYKELEA 61 (126)
T ss_dssp TCEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4566 999999999999999988 6666654
No 326
>3aqt_A Bacterial regulatory proteins, TETR family; helix-turn-helix, all alpha, transcription, transcription RE transcription regulator; 2.50A {Corynebacterium glutamicum} PDB: 3aqs_A
Probab=60.69 E-value=25 Score=32.01 Aligned_cols=61 Identities=11% Similarity=0.102 Sum_probs=43.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~r 347 (473)
+|-.+-.+|..+.| ...|..+||+.+|++...+.......+..+..++..+...+......
T Consensus 50 ~Il~aA~~lf~~~G~~~~t~~~IA~~aGvs~~t~Y~~F~sKe~Ll~~v~~~~~~~~~~~~~~ 111 (245)
T 3aqt_A 50 RLITSARTLMAERGVDNVGIAEITEGANIGTGTFYNYFPDREQLLQAVAEDAFESVGIALDQ 111 (245)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTTSCGGGGGGTCSSHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCcccCcHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 56666677777778 57899999999999988887776665565566666555544444333
No 327
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=60.68 E-value=36 Score=30.22 Aligned_cols=49 Identities=22% Similarity=0.290 Sum_probs=31.5
Q ss_pred HhhCCHHHHHHHHHHhhccC-C---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 406 LTLLNPKERCIVRLRFGIED-G---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 406 L~~LperER~VL~LrY~L~~-g---------e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+...+.++|..-.|...... | -.+|.++||..+|+|+++|+. ++++|++
T Consensus 155 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~lg~sr~tvsR----~l~~L~~ 213 (230)
T 3iwz_A 155 LAFLDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLVGCSREMAGR----VLKKLQA 213 (230)
T ss_dssp HHHCCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred HhcCCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 34566666665444332111 0 137999999999999999977 4555554
No 328
>1r71_A Transcriptional repressor protein KORB; INCP, plasmid partitioning, protein-DNA complex, heilx-turn- helix motif, transcription factor; HET: BRU; 2.20A {Escherichia coli} SCOP: a.4.14.1
Probab=60.58 E-value=9.7 Score=34.92 Aligned_cols=41 Identities=22% Similarity=0.101 Sum_probs=30.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|+|-|+-....++. + .++|..+||+.+|+|+.+|++++.-
T Consensus 35 dL~piE~A~a~~~L~-~--~G~t~eeiA~~lG~s~s~V~~~LrL 75 (178)
T 1r71_A 35 ELTPREIADFIGREL-A--KGKKKGDIAKEIGKSPAFITQHVTL 75 (178)
T ss_dssp CCCHHHHHHHHHHHH-H--TTCCHHHHHHHHTCCHHHHHHHHGG
T ss_pred CCCHHHHHHHHHHHH-H--cCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 477776665443332 1 4799999999999999999987653
No 329
>1rkt_A Protein YFIR; transcription regulator, structural genomics, PSI, protein S initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: a.4.1.9 a.121.1.1
Probab=60.47 E-value=62 Score=28.04 Aligned_cols=73 Identities=10% Similarity=0.043 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.+|..+.|= .-|..+||+..|++...+.......+.-+..++..+...+............+..+.+
T Consensus 16 ~Il~aA~~lf~~~Gy~~ts~~~IA~~agvs~gtlY~yF~sKe~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l 89 (205)
T 1rkt_A 16 EILEAAKTVFKRKGFELTTMKDVVEESGFSRGGVYLYFSSTEEMFRRIIETGLDEGLRKLDKSAEHQSVWASIS 89 (205)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTSCHHHHHTTCSCHHHHHHHHHHHHHHHHHHHHHHHTTTSCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHHCCCcchhhhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHH
Confidence 466666777777884 6889999999999999998888776666767776666554443333333344555555
No 330
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=60.44 E-value=32 Score=30.06 Aligned_cols=27 Identities=33% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+.+ +++|++
T Consensus 164 ~~t~~~lA~~lg~sr~tvsR~----l~~l~~ 190 (207)
T 2oz6_A 164 KITRQEIGRIVGCSREMVGRV----LKSLEE 190 (207)
T ss_dssp ECCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred ccCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 479999999999999999874 445553
No 331
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=60.13 E-value=20 Score=31.80 Aligned_cols=27 Identities=15% Similarity=0.235 Sum_probs=22.5
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+. ++++|++
T Consensus 169 ~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 195 (220)
T 3dv8_A 169 KITHETIANHLGSHREVITR----MLRYFQV 195 (220)
T ss_dssp CCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 78999999999999999987 4555554
No 332
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=60.12 E-value=33 Score=30.13 Aligned_cols=46 Identities=20% Similarity=0.080 Sum_probs=30.3
Q ss_pred HHhhCCHHHHHHHHHHhhccC-C---------CCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 405 LLTLLNPKERCIVRLRFGIED-G---------KPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 405 aL~~LperER~VL~LrY~L~~-g---------e~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
.+...+..+|..-.|....+. | -.+|.++||..+|+|+++|+.+++
T Consensus 113 ~~~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR~l~ 168 (202)
T 2zcw_A 113 RLATQRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAVGSVRETVTKVIG 168 (202)
T ss_dssp HHHHCCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHhCCCHHHHHHHHH
Confidence 345567777765444322110 0 247999999999999999987444
No 333
>1ui5_A A-factor receptor homolog; helix-turn-helix, alpha-helix-bundle, antibiotic; 2.40A {Streptomyces coelicolor} SCOP: a.4.1.9 a.121.1.1 PDB: 1ui6_A
Probab=60.02 E-value=75 Score=28.02 Aligned_cols=64 Identities=17% Similarity=0.202 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhc
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQG 350 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~ 350 (473)
+|-.+-.++..+.| ..-|..+||+..|++...+.......+.-+..++..+...+.........
T Consensus 13 ~Il~aA~~lf~~~Gy~~ts~~~IA~~AGvskgtlY~~F~sKe~L~~~~~~~~~~~~~~~~~~~~~ 77 (215)
T 1ui5_A 13 TIIGAAADLFDRRGYESTTLSEIVAHAGVTKGALYFHFAAKEDLAHAILEIQSRTSRRLAKDLDG 77 (215)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCchhhHhhCCCHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 45566667777778 46889999999999999999988877777777777776666555555443
No 334
>2ras_A Transcriptional regulator, TETR family; bacterial regulatory proteins, DNA-binding, DNA binding 3-helical bundle fold; 1.80A {Novosphingobium aromaticivorans}
Probab=60.00 E-value=45 Score=28.97 Aligned_cols=75 Identities=17% Similarity=0.187 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhh
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQE 361 (473)
+|-++-.++..+.| ...|..+||+..|++...+.......+.-+..++......+............+..+-+..
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~agvs~~t~Y~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 90 (212)
T 2ras_A 15 RLVDVAQAIVEERGGAGLTLSELAARAGISQANLSRYFETREDLMEAIADYWFHPMVEIMEDVLASDLPPRRKMYE 90 (212)
T ss_dssp HHHHHHHHHHHHHTSSCCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHTTHHHHHHHHHHHHSCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHH
Confidence 45566666777777 5789999999999999888877766666666666665555444443333333344443433
No 335
>1x2n_A Homeobox protein pknox1; homeobox domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=59.87 E-value=33 Score=26.09 Aligned_cols=54 Identities=15% Similarity=0.005 Sum_probs=39.1
Q ss_pred CCHHHHHHHHHHhhc--cC-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 409 LNPKERCIVRLRFGI--ED-G-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 409 LperER~VL~LrY~L--~~-g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
+++.+..+|.-.|.- .. . ......+||..+|+++..|..+......+.+..+.+
T Consensus 14 ~~~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~~L~~~qV~~WFqNrR~r~kk~~~~ 71 (73)
T 1x2n_A 14 LPKHATNVMRSWLFQHIGHPYPTEDEKKQIAAQTNLTLLQVNNWFINARRRILQSGPS 71 (73)
T ss_dssp CCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHCcCHHHHHHHhHHHHhhccccccc
Confidence 667777777766631 01 0 122456889999999999999999999998876543
No 336
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=59.81 E-value=11 Score=32.09 Aligned_cols=29 Identities=21% Similarity=0.301 Sum_probs=23.7
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |..|||+.+|||+.+|+. |+..|..
T Consensus 34 g~~Lps~~~La~~~~vSr~tvr~----Al~~L~~ 63 (125)
T 3neu_A 34 EDKLPSVREMGVKLAVNPNTVSR----AYQELER 63 (125)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4556 699999999999999987 6666654
No 337
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=59.73 E-value=18 Score=28.95 Aligned_cols=25 Identities=16% Similarity=0.138 Sum_probs=23.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.+++.+||+.+|+|+.++..+.++.
T Consensus 19 ~~~~~~lA~~~~~S~~~l~r~fk~~ 43 (103)
T 3lsg_A 19 QFTLSVLSEKLDLSSGYLSIMFKKN 43 (103)
T ss_dssp TCCHHHHHHHTTCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 8999999999999999999988876
No 338
>3him_A Probable transcriptional regulator; TETR, bacterial, RHA1, PSI-2, MCSG, structural midwest center for structural genomics; 2.20A {Rhodococcus jostii}
Probab=59.68 E-value=26 Score=30.08 Aligned_cols=80 Identities=14% Similarity=0.045 Sum_probs=51.3
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMG 365 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lg 365 (473)
+|-.+-.+|..+.|- ..|..+||+..|++...+.......+..+..++..+...+............+..+.+...+..
T Consensus 20 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 99 (211)
T 3him_A 20 RIRAAAIEVFAAKGYGATTTREIAASLDMSPGAVYPHYKTKESLLYAISLEGHHSVLAAITAADFPDIAAPDRLMSTVTA 99 (211)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHTTCCTTSSTTTCSSHHHHHHHHHHHHHHHHHHHHHHTCCTTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCcCCHHHHHHHhCCCcChhhhcCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 556666677777884 5899999999999988777766655566666666665555554444444444444444443333
Q ss_pred H
Q 011992 366 L 366 (473)
Q Consensus 366 L 366 (473)
+
T Consensus 100 ~ 100 (211)
T 3him_A 100 Y 100 (211)
T ss_dssp H
T ss_pred H
Confidence 3
No 339
>3e7l_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; 2.25A {Aquifex aeolicus} PDB: 4fth_A
Probab=59.58 E-value=11 Score=28.19 Aligned_cols=36 Identities=8% Similarity=0.090 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 412 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 412 rER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
-|+.+|.-.+.- .+-+..+.|+.||||+.++...+.
T Consensus 19 ~E~~~i~~aL~~---~~gn~~~aA~~LGisr~tL~rklk 54 (63)
T 3e7l_A 19 FEKIFIEEKLRE---YDYDLKRTAEEIGIDLSNLYRKIK 54 (63)
T ss_dssp HHHHHHHHHHHH---TTTCHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHH
Confidence 355555433321 346789999999999999887654
No 340
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=59.15 E-value=6.2 Score=36.43 Aligned_cols=25 Identities=20% Similarity=0.182 Sum_probs=23.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|.+|+|+.+|+|.++|+++++.
T Consensus 29 ~g~t~~~lA~~~gis~~~i~~~~~g 53 (236)
T 3bdn_A 29 LGLSQESVADKMGMGQSGVGALFNG 53 (236)
T ss_dssp TTCCSHHHHHHHTSCHHHHHHHTTT
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHcC
Confidence 6889999999999999999999875
No 341
>3col_A Putative transcription regulator; structural genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 2.10A {Lactobacillus plantarum WCFS1}
Probab=58.90 E-value=36 Score=28.76 Aligned_cols=81 Identities=6% Similarity=0.067 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHH--HHHHHHhhcCCcchhhHhhhhH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV--VHVAKQYQGRGISLHDLLQEGS 363 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV--~sIA~ry~~~~~saEDLiQEg~ 363 (473)
+|-.+-.++..+.|= ..|..+||+.+|++...+.......+.-+..++..+...+ ............+..+.+...+
T Consensus 14 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 93 (196)
T 3col_A 14 KIQDAVAAIILAEGPAGVSTTKVAKRVGIAQSNVYLYFKNKQALIDSVYARETNRILSTTDLDRLSDSTIDVTTRIRLYV 93 (196)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHTTCCHHHHHHHTCTTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCcHHHHHHHhCCHHHHHHHHHHHHHHHHHhHHHHHHhccCCCCHHHHHHHHH
Confidence 455566666667774 6899999999999999988877766666666666665554 4444333333444444444443
Q ss_pred HHHH
Q 011992 364 MGLM 367 (473)
Q Consensus 364 lgL~ 367 (473)
..++
T Consensus 94 ~~~~ 97 (196)
T 3col_A 94 QQVY 97 (196)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 3333
No 342
>3ni7_A Bacterial regulatory proteins, TETR family; transcriptional regulator, structural genomics, PSI-2, structure initiative; HET: MSE; 2.78A {Nitrosomonas europaea}
Probab=58.86 E-value=41 Score=30.16 Aligned_cols=52 Identities=8% Similarity=0.112 Sum_probs=38.2
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANL 338 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl 338 (473)
+|-.+-.+|..+.| ...|..+||+.+|++...+.....+.+..+..++....
T Consensus 11 ~Il~aA~~l~~~~G~~~~tv~~Ia~~agvs~~t~y~~F~~K~~L~~~~~~~~~ 63 (213)
T 3ni7_A 11 AIVDTAVELAAHTSWEAVRLYDIAARLAVSLDEIRLYFREKDELIDAWFDRAD 63 (213)
T ss_dssp HHHHHHHHHHHHSCSTTCCHHHHHHHTTSCHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHH
Confidence 56666677778888 56889999999999999998888654444444444443
No 343
>3r1f_A ESX-1 secretion-associated regulator ESPR; helix-turn-helix, transcription factor, helix-turn-helix transcription factor; 2.50A {Mycobacterium tuberculosis}
Probab=58.80 E-value=7 Score=33.97 Aligned_cols=25 Identities=28% Similarity=0.296 Sum_probs=23.0
Q ss_pred CCCCCHHHHHHHHC-----CCHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIFG-----LSKERVRQLES 450 (473)
Q Consensus 426 ge~lTlkEIAe~LG-----IS~~rVrqi~~ 450 (473)
+.++|++|+|+.+| ||.+.|+++++
T Consensus 24 ~~~~T~~elA~~~~~~G~~is~s~is~~E~ 53 (135)
T 3r1f_A 24 RGPHTSAEVIAALKAEGITMSAPYLSQLRS 53 (135)
T ss_dssp SCCCCHHHHHHHHHTTTCCCCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHcccCCCcCHHHHHHHHC
Confidence 46899999999999 99999999986
No 344
>1y6u_A XIS, excisionase from transposon TN916; structure, DNA architectural protein, tyrosine recombinase, winged-helix protein; NMR {Enterococcus faecalis}
Probab=58.67 E-value=5.5 Score=31.11 Aligned_cols=25 Identities=16% Similarity=0.417 Sum_probs=22.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.-+|.+|+|+.|||++++|+++...
T Consensus 15 ~~LTi~EaAeylgIg~~~l~~L~~~ 39 (70)
T 1y6u_A 15 YTLTIEEASKYFRIGENKLRRLAEE 39 (70)
T ss_dssp SEEEHHHHHHHTCSCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHCcCHHHHHHHHHc
Confidence 4589999999999999999998755
No 345
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=58.56 E-value=19 Score=29.05 Aligned_cols=26 Identities=15% Similarity=0.364 Sum_probs=24.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+++++.+||+.+|+|+.++..+.++.
T Consensus 17 ~~~~~~~lA~~~~~s~~~l~r~fk~~ 42 (108)
T 3mn2_A 17 RPITIEKLTALTGISSRGIFKAFQRS 42 (108)
T ss_dssp SCCCHHHHHHHHTCCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 78999999999999999999988876
No 346
>1j9i_A GPNU1 DBD;, terminase small subunit; DNA binding domain, homodimer, viral assembly, winged helix-turn-helix, viral protein; NMR {Enterobacteria phage lambda} SCOP: a.6.1.5
Probab=58.49 E-value=4.6 Score=30.60 Aligned_cols=25 Identities=16% Similarity=0.420 Sum_probs=21.8
Q ss_pred CCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 429 KSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 429 lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
+|.+|+|+.||||..||..+....+
T Consensus 3 lt~~e~a~~LgvS~~Tl~rw~~~G~ 27 (68)
T 1j9i_A 3 VNKKQLADIFGASIRTIQNWQEQGM 27 (68)
T ss_dssp EEHHHHHHHTTCCHHHHHHHTTTTC
T ss_pred cCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 5789999999999999999877643
No 347
>1b72_B Protein (PBX1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1 PDB: 1lfu_P
Probab=58.48 E-value=16 Score=28.97 Aligned_cols=56 Identities=16% Similarity=0.157 Sum_probs=41.1
Q ss_pred hCCHHHHHHHHHHhh---ccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Q 011992 408 LLNPKERCIVRLRFG---IEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 463 (473)
Q Consensus 408 ~LperER~VL~LrY~---L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~ 463 (473)
.+++.+..+|.-.|. .+.. ......+||..+|+++..|..+......|.|......
T Consensus 7 ~ft~~q~~~Le~~f~~h~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~r~kk~~~~~ 66 (87)
T 1b72_B 7 NFNKQATEILNEYFYSHLSNPYPSEEAKEELAKKCGITVSQVSNWFGNKRIRYKKNIGKF 66 (87)
T ss_dssp CCCHHHHHHHHHHHHTTTTSCCCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHCGGGG
T ss_pred CCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhccccc
Confidence 367778888887773 1110 1123568899999999999999999999998866543
No 348
>2dmn_A Homeobox protein TGIF2LX; TGFB-induced factor 2-like protein, X-linked TGF(beta) induced transcription factor 2-like protein, TGIF-like on the X; NMR {Homo sapiens}
Probab=58.32 E-value=21 Score=28.28 Aligned_cols=55 Identities=13% Similarity=-0.016 Sum_probs=39.7
Q ss_pred CCHHHHHHHHHHhhcc--C-C-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Q 011992 409 LNPKERCIVRLRFGIE--D-G-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 463 (473)
Q Consensus 409 LperER~VL~LrY~L~--~-g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~ 463 (473)
++..+..+|.-.|.-. . . ....-.+||..+|+++..|..+......+.+..+...
T Consensus 14 ~s~~q~~~L~~~f~~~~~~pYPs~~~r~~LA~~~gLs~~qV~~WFqNrR~r~k~~~~~~ 72 (83)
T 2dmn_A 14 LPAESVKILRDWMYKHRFKAYPSEEEKQMLSEKTNLSLLQISNWFINARRRILPDMLQQ 72 (83)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHhhHHhhhhHhhhcHHHHHh
Confidence 5666677776555410 0 0 2234578999999999999999999999998876554
No 349
>2h8r_A Hepatocyte nuclear factor 1-beta; trasncription factor, POU, homeo, protein-DNA, human disease; 3.20A {Homo sapiens}
Probab=58.23 E-value=12 Score=35.65 Aligned_cols=25 Identities=20% Similarity=0.268 Sum_probs=23.2
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..+||+.+|||.++|+++++.
T Consensus 43 ~gltQ~evA~~tGISqS~ISq~e~~ 67 (221)
T 2h8r_A 43 HNIPQREVVDVTGLNQSHLSQHLNK 67 (221)
T ss_dssp HTCCHHHHHHHHTCCHHHHHHHHTT
T ss_pred cCCCHHHHHHHhCCCHHHHHHHHhC
Confidence 5799999999999999999999973
No 350
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=58.22 E-value=8.4 Score=32.66 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=31.4
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIF--GLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~L--GIS~~rVrqi~~R 451 (473)
+.+..+.||.+--. + ...|..|||+.+ |+|..+|++++++
T Consensus 11 md~~d~~IL~~L~~--~-g~~s~~eLA~~l~~giS~~aVs~rL~~ 52 (111)
T 3b73_A 11 MTIWDDRILEIIHE--E-GNGSPKELEDRDEIRISKSSVSRRLKK 52 (111)
T ss_dssp CCHHHHHHHHHHHH--H-SCBCHHHHHTSTTCCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHH--c-CCCCHHHHHHHHhcCCCHHHHHHHHHH
Confidence 67777888765321 1 489999999999 9999999997654
No 351
>2dmu_A Homeobox protein goosecoid; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=58.15 E-value=16 Score=27.72 Aligned_cols=52 Identities=10% Similarity=0.014 Sum_probs=37.3
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|...
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2dmu_A 14 FTDEQLEALENLFQETKYPDVGTREQLARKVHLREEKVEVWFKNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCCCHHHeehccccccccccccC
Confidence 556666677666653211 2234678999999999999999988888887643
No 352
>3uj3_X DNA-invertase; helix-turn-helix, site-specific recombinase, recombination; 3.51A {Enterobacteria phage MU} PDB: 3plo_X
Probab=58.03 E-value=2.1 Score=38.93 Aligned_cols=36 Identities=11% Similarity=0.029 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 412 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 412 rER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.-+.|+.++- .|.|..+||+.||||.++|..++...
T Consensus 147 ~~~~i~~l~~-----~G~s~~~Ia~~l~vs~~Tvyr~l~~~ 182 (193)
T 3uj3_X 147 EWEQAGRLLA-----QGIPRKQVALIYDVALSTLYKKHPAK 182 (193)
T ss_dssp -----------------------------------------
T ss_pred HHHHHHHHHH-----cCCCHHHHHHHHCcCHHHHHHHHHHh
Confidence 3455666543 68999999999999999999877654
No 353
>2hdd_A Protein (engrailed homeodomain Q50K); DNA binding, complex (DNA binding protein/DNA), transcription/DNA complex; HET: DNA; 1.90A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1hdd_C* 2jwt_A 3hdd_A 1p7j_A* 1p7i_A* 2hos_A 2hot_A 1du0_A* 1ztr_A 1enh_A 2p81_A
Probab=57.84 E-value=15 Score=27.12 Aligned_cols=49 Identities=8% Similarity=0.193 Sum_probs=35.5
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
+++.+..+|.-.|..+.. ......+||..+|+++..|..+...-..+.|
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~k 59 (61)
T 2hdd_A 10 FSSEQLARLKREFNENRYLTERRRQQLSSELGLNEAQIKIWFKNKRAKIK 59 (61)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHHHHHhhhhccccc
Confidence 566777777777753221 2234568899999999999999887777665
No 354
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=57.57 E-value=37 Score=29.63 Aligned_cols=50 Identities=20% Similarity=0.127 Sum_probs=32.8
Q ss_pred HHhhCCHHHHHHHHHHhhcc-CC---------CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 405 LLTLLNPKERCIVRLRFGIE-DG---------KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 405 aL~~LperER~VL~LrY~L~-~g---------e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+...+..+|..-.|....+ .| -.+|.++||..+|+|+++|+. ++++|++
T Consensus 106 ~l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~lg~sr~tvsR----~l~~L~~ 165 (195)
T 3b02_A 106 HLQTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADATASIRESVSK----VLADLRR 165 (195)
T ss_dssp HHTSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTTTSCHHHHHH----HHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 34567777776544433211 11 247999999999999999987 4555554
No 355
>2hwv_A DNA-binding response regulator VICR; essential response regulator, C-terminal domain, DNA-binding transcription; 1.90A {Enterococcus faecalis}
Probab=57.56 E-value=28 Score=29.26 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=37.5
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|..+|.+-.. ..|+-.|.++|.+.+ ..+..+|...+++.++||.
T Consensus 43 ~Lt~~E~~LL~~L~~-~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~ 96 (121)
T 2hwv_A 43 ELTHREFELLYYLAK-HIGQVMTREHLLQTVWGYDYFGDVRTVDVTVRRLREKIE 96 (121)
T ss_dssp ECCHHHHHHHHHHHH-TTTCCBCHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHHC
T ss_pred ECCHHHHHHHHHHHH-cCCeEEcHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHh
Confidence 489999998766543 556889999999998 5778888886666666654
No 356
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=57.52 E-value=31 Score=30.83 Aligned_cols=28 Identities=11% Similarity=0.039 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+.+ +++|++
T Consensus 179 ~~~t~~~lA~~lg~sr~tvsR~----l~~l~~ 206 (232)
T 2gau_A 179 IYLSREELATLSNMTVSNAIRT----LSTFVS 206 (232)
T ss_dssp CCCCHHHHHHHTTSCHHHHHHH----HHHHHH
T ss_pred cccCHHHHHHHhCCCHHHHHHH----HHHHHH
Confidence 4689999999999999999774 555554
No 357
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=57.39 E-value=11 Score=30.78 Aligned_cols=25 Identities=4% Similarity=0.046 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
...+..|||+.||||..+|+..+.+
T Consensus 15 g~vsv~eLA~~l~VS~~TIRrDL~~ 39 (87)
T 2k02_A 15 GRMEAKQLSARLQTPQPLIDAMLER 39 (87)
T ss_dssp CSEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCcHHHHHHHHCcCHHHHHHHHHH
Confidence 5789999999999999999987654
No 358
>1nk2_P Homeobox protein VND; homeodomain, DNA-binding protein, embryonic development, complex (homeodomain/DNA); HET: DNA; NMR {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 1nk3_P* 1vnd_A 1qry_A
Probab=57.29 E-value=16 Score=28.41 Aligned_cols=55 Identities=13% Similarity=0.184 Sum_probs=38.9
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccC
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGGK 463 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~~ 463 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|......
T Consensus 16 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kr~~~~~ 71 (77)
T 1nk2_P 16 FTKAQTYELERRFRQQRYLSAPEREHLASLIRLTPTQVKIWFQNHRYKTKRAQNEK 71 (77)
T ss_dssp CCHHHHHHHHHHHHHCSCCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHhhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhcchhhhhccc
Confidence 456666677666652221 2224578999999999999999988888887655443
No 359
>2cue_A Paired box protein PAX6; homeobox domain, transcription factor, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=57.13 E-value=19 Score=28.05 Aligned_cols=52 Identities=8% Similarity=0.037 Sum_probs=37.8
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|..-
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~ 66 (80)
T 2cue_A 14 FTQEQIEALEKEFERTHYPDVFARERLAAKIDLPEARIQVWFSNRRAKWRREE 66 (80)
T ss_dssp SCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHHHHHHHHHHHHHh
Confidence 567777788877753221 1223578899999999999999988777777643
No 360
>2h1k_A IPF-1, pancreatic and duodenal homeobox 1, homeodomain; protein-DNA complex, transcription/DNA complex; 2.42A {Mesocricetus auratus}
Probab=56.97 E-value=20 Score=26.56 Aligned_cols=51 Identities=8% Similarity=0.075 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|..
T Consensus 10 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk~ 61 (63)
T 2h1k_A 10 YTRAQLLELEKEFLFNKYISRPRRVELAVMLNLTERHIKIWFQNRRMKWKKE 61 (63)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHHHHhhhhhhhhh
Confidence 566667777776653221 223457899999999999999998888777753
No 361
>3ccy_A Putative TETR-family transcriptional regulator; APC88698, structural G PSI-2, protein structure initiative; HET: MSE; 2.01A {Bordetella parapertussis 12822}
Probab=56.73 E-value=34 Score=29.70 Aligned_cols=74 Identities=11% Similarity=0.091 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQ 360 (473)
+|-++-.+|..+.| ..-|..+||+..|++...+.......+.-+..++..+...+............+..+.+.
T Consensus 18 ~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~yF~sKe~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 92 (203)
T 3ccy_A 18 TIIERAAAMFARQGYSETSIGDIARACECSKSRLYHYFDSKEAVLRDMLTTHVDSLLERCRQVLYGSNEPKTRFL 92 (203)
T ss_dssp HHHHHHHHHHHHTCTTTSCHHHHHHHTTCCGGGGTTTCSCHHHHHHHHHHHHHHHHHHHHHHHHTTCSCHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCcCeeeeeeCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 45666677777888 458899999999999887777666555666666666555544444433333334444333
No 362
>2e1o_A Homeobox protein PRH; DNA binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=56.60 E-value=19 Score=27.27 Aligned_cols=52 Identities=12% Similarity=0.190 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..-
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rr~~ 66 (70)
T 2e1o_A 14 FSNDQTIELEKKFETQKYLSPPERKRLAKMLQLSERQVKTWFQNRRAKWRRSG 66 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCCCHHHhhHhhHhhHhhcCCCC
Confidence 566667777766653221 2234578999999999999999998888887653
No 363
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=56.60 E-value=30 Score=30.86 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=22.0
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+.+ +++|++
T Consensus 163 ~~t~~~lA~~lG~sr~tvsR~----l~~L~~ 189 (222)
T 1ft9_A 163 DFTVEEIANLIGSSRQTTSTA----LNSLIK 189 (222)
T ss_dssp CCCHHHHHHHHCSCHHHHHHH----HHHHHH
T ss_pred cCCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 479999999999999999874 455554
No 364
>1zq3_P PRD-4, homeotic bicoid protein; protein-DNA complex, double helix, helix-turn-helix; NMR {Drosophila melanogaster} SCOP: a.4.1.1
Probab=56.45 E-value=25 Score=26.51 Aligned_cols=53 Identities=11% Similarity=0.067 Sum_probs=38.7
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..-.
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~kk~~~ 62 (68)
T 1zq3_P 9 FTSSQIAELEQHFLQGRYLTAPRLADLSAKLALGTAQVKIWFKNRRRRHKIQSD 62 (68)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCcCHHHhhHhhHHHHHHHHHHhc
Confidence 566777788777763221 22245688999999999999999888888776544
No 365
>2q24_A Putative TETR family transcriptional regulator; structural genomics, PSI, protein structure initiative; 1.80A {Streptomyces coelicolor A3}
Probab=56.31 E-value=50 Score=28.30 Aligned_cols=57 Identities=12% Similarity=0.159 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~s 343 (473)
+|-.+-.++..+.|-..|..+||+.+|++...+.......+.-+..++..+...+..
T Consensus 19 ~Il~aA~~lf~~~G~~~s~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~ 75 (194)
T 2q24_A 19 KILAAAVRVFSEEGLDAHLERIAREAGVGSGTLYRNFPTREALIEAAYRNEVARLCD 75 (194)
T ss_dssp HHHHHHHHHHHHHCTTCCHHHHHHHTTCCHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcCCCHHHHHHHhCCChHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 455566667777786689999999999999999888877666666666655544433
No 366
>2k4j_A Putative transcriptional regulator; response regulator, acid resistance, DN binding, phosphoprotein, transcription regul; NMR {Helicobacter pylori}
Probab=56.26 E-value=22 Score=29.70 Aligned_cols=50 Identities=16% Similarity=0.096 Sum_probs=39.7
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+++|..+|.+-.. ..|+-.|.++|.+.+ ..+..+|...+++.++||..
T Consensus 41 ~Lt~~E~~LL~~L~~-~~g~vvsre~L~~~vW~~~~~~~~~tl~~~I~rLRkkL~~ 95 (115)
T 2k4j_A 41 DLTRAEYEILSLLIS-KKGYVFSRESIAIESESINPESSNKSIDVIIGRLRSKIEK 95 (115)
T ss_dssp CSCHHHHHHHHHHHH-HCCCEECHHHHHHHTCCSSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHH-cCCcEEcHHHHHHHHcCCCCCCchhHHHHHHHHHHHHhhc
Confidence 489999998865443 456889999999999 57888999888877777764
No 367
>1k61_A Mating-type protein alpha-2; protein-DNA complex, homeodomain, hoogsteen base PAIR, transcription/DNA complex; HET: 5IU; 2.10A {Synthetic} SCOP: a.4.1.1
Probab=56.07 E-value=20 Score=26.26 Aligned_cols=51 Identities=14% Similarity=0.066 Sum_probs=36.6
Q ss_pred hCCHHHHHHHHHHhhccC-CCCC---CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIED-GKPK---SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~-ge~l---TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+++.+..+|.-.|.-.- ..-+ ...+||..+|+++..|..+......+.|.
T Consensus 4 ~ft~~q~~~Le~~f~~~~~~~yp~~~~r~~La~~~gl~~~qV~~WFqNrR~r~kk 58 (60)
T 1k61_A 4 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEKT 58 (60)
T ss_dssp SCCHHHHHHHHHHHHHTTTSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHccccc
Confidence 367777888877776210 1122 35688999999999999999888777663
No 368
>3nau_A Zinc fingers and homeoboxes protein 2; ZHX2, corepressor, homeodomain, domain swapping, structural oxford protein production facility, OPPF; 2.70A {Homo sapiens}
Probab=55.82 E-value=20 Score=27.89 Aligned_cols=49 Identities=12% Similarity=0.192 Sum_probs=35.9
Q ss_pred HHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 411 erER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
..+..+|.-.|..... ......+||..+|+|+..|..+...-+.|+|+-
T Consensus 13 ~~Ql~~LE~~F~~~~YPs~~er~eLA~~tgLt~~qVkvWFqNRR~k~Kkg 62 (66)
T 3nau_A 13 KEQIAHLKASFLQSQFPDDAEVYRLIEVTGLARSEIKKWFSDHRYRCQRG 62 (66)
T ss_dssp HHHHHHHHHHHHGGGSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHHHHhCcCHHHhhHhcccchhhhhcc
Confidence 3455555555543221 445678899999999999999999999888864
No 369
>3g1o_A Transcriptional regulatory repressor protein (TETR-family) EThr; TERT family, transcriptional repressor, DNA-binding; HET: RF1; 1.85A {Mycobacterium tuberculosis}
Probab=55.75 E-value=58 Score=29.47 Aligned_cols=83 Identities=10% Similarity=0.059 Sum_probs=56.7
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCC--cchhhHhhhhH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRG--ISLHDLLQEGS 363 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~--~saEDLiQEg~ 363 (473)
+|-++-.+|..+.|- ..|..+||+.+|++...+.......+..+..++..+...+........... .+..+.+...+
T Consensus 47 ~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sK~~L~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (255)
T 3g1o_A 47 AILATAENLLEDRPLADISVDDLAKGAGISRPTFYFYFPSKEAVLLTLLDRVVNQADMALQTLAENPADTDRENMWRTGI 126 (255)
T ss_dssp HHHHHHHHHHTTSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHH
Confidence 455566666666774 689999999999999999998887777777777777666665555443332 25555555544
Q ss_pred HHHHHH
Q 011992 364 MGLMKS 369 (473)
Q Consensus 364 lgL~kA 369 (473)
..++..
T Consensus 127 ~~~~~~ 132 (255)
T 3g1o_A 127 NVFFET 132 (255)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
No 370
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=55.74 E-value=15 Score=31.93 Aligned_cols=25 Identities=16% Similarity=0.163 Sum_probs=22.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.++.||++.+|||.++|++++.+
T Consensus 36 g~~~~~eLa~~lgis~~tls~~L~~ 60 (146)
T 2f2e_A 36 GLTRFGEFQKSLGLAKNILAARLRN 60 (146)
T ss_dssp TCCSHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5799999999999999999986554
No 371
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=55.56 E-value=5.6 Score=37.21 Aligned_cols=44 Identities=18% Similarity=0.194 Sum_probs=31.3
Q ss_pred hCCHHHHHHHHHHhhccC-CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIED-GKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~-ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|++.+..+|...|.+.. |...+..+||+.||++.++|+.++.+
T Consensus 3 ~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l~vs~~tvs~~l~~ 47 (226)
T 2qq9_A 3 DLVATTEMYLRTIYELEEEGVTPLRARIAERLEQSGPTVSQTVAR 47 (226)
T ss_dssp CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhhcCCCccHHHHHHHHCCCHHHHHHHHHH
Confidence 466777777776665532 22234599999999999999986554
No 372
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=55.37 E-value=18 Score=31.92 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+. ++++|++
T Consensus 162 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 189 (216)
T 4ev0_A 162 FQIRHHELAALAGTSRETVSR----VLHALAE 189 (216)
T ss_dssp EECCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CCCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 457999999999999999977 5555554
No 373
>3a02_A Homeobox protein aristaless; homeodomain, developmental protein, DNA-binding, N gene regulation; 1.00A {Drosophila melanogaster} PDB: 3lnq_A 3cmy_A
Probab=55.37 E-value=14 Score=27.12 Aligned_cols=50 Identities=10% Similarity=0.068 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|.-.|..+.. ......+||..+|+++..|..+...-..|.|.
T Consensus 6 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~rk 56 (60)
T 3a02_A 6 FTSFQLEELEKAFSRTHYPDVFTREELAMKIGLTEARIQVWFQNRRAKWRK 56 (60)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHC-
T ss_pred cCHHHHHHHHHHHHcCCCcCHHHHHHHHHHHCcCHHHHHHHhhhhhhhhHh
Confidence 566677777777753221 22235689999999999999999887777665
No 374
>3c07_A Putative TETR-family transcriptional regulator; APC6322, structural GEN PSI-2, protein structure initiative; 2.70A {Streptomyces coelicolor A3} SCOP: a.4.1.9 a.121.1.1 PDB: 2ofl_A*
Probab=55.30 E-value=61 Score=30.24 Aligned_cols=57 Identities=11% Similarity=0.010 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 011992 286 IRLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (473)
Q Consensus 286 ~kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~ 342 (473)
.+|-.+-.+|..+.|= ..|..+||+..|++...+.......+..+..++......+.
T Consensus 44 ~~Il~AA~~lf~e~G~~~~S~~~IA~~AGVs~~tlY~hF~sKe~Ll~av~~~~~~~~~ 101 (273)
T 3c07_A 44 ALILETAMRLFQERGYDRTTMRAIAQEAGVSVGNAYYYFAGKEHLIQGFYDRIAAEHR 101 (273)
T ss_dssp HHHHHHHHHHHHHTCSTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 3566677777778884 47999999999999999998887666666666655554443
No 375
>1b72_A Protein (homeobox protein HOX-B1); homeodomain, DNA, complex, DNA-binding protein, protein/DNA complex; HET: DNA; 2.35A {Homo sapiens} SCOP: a.4.1.1
Probab=54.78 E-value=24 Score=28.57 Aligned_cols=54 Identities=9% Similarity=0.079 Sum_probs=40.1
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
.+++.+..+|...|.-+.. ......+||..+|+++..|..+...-..|.|....
T Consensus 40 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~~ 94 (97)
T 1b72_A 40 NFTTRQLTELEKEFHFNKYLSRARRVEIAATLELNETQVKIWFQNRRMKQKKRER 94 (97)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhHHHHHHHhHHHhHHhc
Confidence 4777778888877752211 12245789999999999999999888888877644
No 376
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=54.75 E-value=42 Score=30.56 Aligned_cols=28 Identities=32% Similarity=0.488 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+.+ +++|++
T Consensus 176 ~~~t~~~iA~~lG~sr~tvsR~----l~~L~~ 203 (250)
T 3e6c_C 176 MPLSQKSIGEITGVHHVTVSRV----LASLKR 203 (250)
T ss_dssp CCCCHHHHHHHHTCCHHHHHHH----HHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 3689999999999999999874 455554
No 377
>2k40_A Homeobox expressed in ES cells 1; thermostable homeodomain variant, DNA binding protein, developmental protein, disease mutation, DNA-binding; NMR {Homo sapiens}
Probab=54.75 E-value=23 Score=26.57 Aligned_cols=52 Identities=13% Similarity=0.146 Sum_probs=38.0
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|...
T Consensus 8 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kr~~ 60 (67)
T 2k40_A 8 FTQNQIEVLENVFRVNCYPGIDILEDLAQKLNLELDRIQIWFQNRRAKLKRSH 60 (67)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHCSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCcCHHHhhHhhHhHHHHHhHhc
Confidence 566777788877752211 1223568899999999999999988888877543
No 378
>1ic8_A Hepatocyte nuclear factor 1-alpha; transcription regulation, DNA-binding, POU domain, diabetes, disease mutation, MODY3, transcription/DNA comple; 2.60A {Homo sapiens} SCOP: a.4.1.1 a.35.1.1
Probab=54.53 E-value=22 Score=33.00 Aligned_cols=24 Identities=21% Similarity=0.191 Sum_probs=22.7
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
.++|..++|+.+|||.++|++++.
T Consensus 42 ~gitQ~~lA~~~GiSqs~ISr~l~ 65 (194)
T 1ic8_A 42 HNIPQREVVDTTGLNQSHLSQHLN 65 (194)
T ss_dssp TTCCHHHHHHHHCCCHHHHHHHHH
T ss_pred cCCCHHHHHHHhCCChHHHHHHHh
Confidence 689999999999999999999975
No 379
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=54.45 E-value=15 Score=33.88 Aligned_cols=37 Identities=14% Similarity=0.131 Sum_probs=27.0
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+|++.|+.+--. ..-.|..|+|+.||||+.|||.=+.
T Consensus 12 eR~~~i~~~l~~---~~~~~~~~la~~~~vs~~TiRrDl~ 48 (190)
T 4a0z_A 12 KRREAIRQQIDS---NPFITDHELSDLFQVSIQTIRLDRT 48 (190)
T ss_dssp HHHHHHHHHHHH---CTTCCHHHHHHHHTSCHHHHHHHHH
T ss_pred HHHHHHHHHHHH---CCCEeHHHHHHHHCCCHHHHHHHHH
Confidence 455555555443 2457999999999999999997543
No 380
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=54.45 E-value=7.7 Score=31.72 Aligned_cols=45 Identities=13% Similarity=0.069 Sum_probs=29.7
Q ss_pred HHHHhhCCHHHHH-HHHHHhhccCCCCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011992 403 RNLLTLLNPKERC-IVRLRFGIEDGKPKSLSEVGNIF-GLSKERVRQLESR 451 (473)
Q Consensus 403 ~~aL~~LperER~-VL~LrY~L~~ge~lTlkEIAe~L-GIS~~rVrqi~~R 451 (473)
...++.+..+-+. ||..-+. .++++.||++.+ |++.++|++++.+
T Consensus 16 ~~~l~~l~~~~~~~IL~~L~~----~~~~~~eL~~~l~gis~~~ls~~L~~ 62 (107)
T 2fsw_A 16 RKSMQIFAGKWTLLIIFQINR----RIIRYGELKRAIPGISEKMLIDELKF 62 (107)
T ss_dssp HHHHHHHTSSSHHHHHHHHTT----SCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred HHHHHHHcCccHHHHHHHHHh----CCcCHHHHHHHcccCCHHHHHHHHHH
Confidence 3444455555443 3322222 579999999999 5999999986554
No 381
>1akh_A Protein (mating-type protein A-1); complex (TWO DNA-binding proteins/DNA), complex, DNA- binding protein, DNA; HET: DNA; 2.50A {Saccharomyces cerevisiae} SCOP: a.4.1.1 PDB: 1f43_A 1yrn_A*
Probab=54.44 E-value=14 Score=27.12 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=34.2
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYR 455 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~K 455 (473)
.+++.+..+|.-.|..+.. ......+||..+|+++..|..+...-..+
T Consensus 11 ~ft~~q~~~Le~~f~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k 59 (61)
T 1akh_A 11 SISPQARAFLEEVFRRKQSLNSKEKEEVAKKCGITPLQVRVWFINKRMR 59 (61)
T ss_dssp -CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhc
Confidence 4677788888877763221 22245688999999999999998766554
No 382
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=54.35 E-value=12 Score=37.33 Aligned_cols=44 Identities=14% Similarity=0.232 Sum_probs=30.8
Q ss_pred HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 411 PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 411 erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
+..+.||.+-.. .+|+..|-+|||+.||||+.+|++. ++.|++.
T Consensus 3 ~~~~~iL~~L~~-~~g~~~Sg~eLa~~lgvSr~aV~k~----i~~L~~~ 46 (323)
T 3rkx_A 3 KYSQDVLQLLYK-NKPNYISGQSIAESLNISRTAVKKV----IDQLKLE 46 (323)
T ss_dssp CHHHHHHHHHHH-HTTSCBCHHHHHHHHTSCHHHHHHH----HHHHHHT
T ss_pred hHHHHHHHHHHh-CCCCccCHHHHHHHHCCCHHHHHHH----HHHHHhc
Confidence 345556654421 2347899999999999999999885 4456553
No 383
>2zb9_A Putative transcriptional regulator; transcription regulator, TETR family, helix-turn-helix, DNA- binding, transcription regulation; 2.25A {Streptomyces coelicolor}
Probab=54.29 E-value=90 Score=27.02 Aligned_cols=56 Identities=14% Similarity=-0.034 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHH
Q 011992 286 IRLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV 341 (473)
Q Consensus 286 ~kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV 341 (473)
.+|-.+-.++..+.| ...|..+||+.+|++...+.......+..+..++..+...+
T Consensus 26 ~~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~ 82 (214)
T 2zb9_A 26 AEVLHAVGELLLTEGTAQLTFERVARVSGVSKTTLYKWWPSKGALALDGYFHAVEDT 82 (214)
T ss_dssp HHHHHHHHHHHHHHCGGGCCHHHHHHHHCCCHHHHHHHCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccCCHHHHHHHHCCCHHHHHHHCCCHHHHHHHHHHHHhhhc
Confidence 356666677777788 46899999999999999999888766665555555554433
No 384
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=54.25 E-value=12 Score=35.18 Aligned_cols=26 Identities=19% Similarity=0.170 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 426 ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+.++|+.|||+.+|+++++|..++..
T Consensus 21 ~~~~~~~ela~~~gl~~stv~r~l~~ 46 (249)
T 1mkm_A 21 PGDVSVSEIAEKFNMSVSNAYKYMVV 46 (249)
T ss_dssp SSCBCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 35799999999999999999987664
No 385
>2p5t_A Putative transcriptional regulator PEZA; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=54.12 E-value=2.7 Score=37.02 Aligned_cols=25 Identities=20% Similarity=0.345 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.++|..|||+.+|||+++|++++..
T Consensus 13 ~gltq~elA~~lgis~~~vs~~e~G 37 (158)
T 2p5t_A 13 HDLTQLEFARIVGISRNSLSRYENG 37 (158)
T ss_dssp -------------------------
T ss_pred cCCCHHHHHHHHCcCHHHHHHHHCC
Confidence 7899999999999999999998754
No 386
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=54.02 E-value=4.2 Score=33.07 Aligned_cols=23 Identities=22% Similarity=0.485 Sum_probs=20.1
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQL 448 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi 448 (473)
|+.+ +..|||+.+|||+.+|++.
T Consensus 32 g~~lps~~eLa~~~~vSr~tvr~a 55 (102)
T 1v4r_A 32 GDTLPSVADIRAQFGVAAKTVSRA 55 (102)
T ss_dssp TSBCCCHHHHHHHSSSCTTHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHHH
Confidence 4565 9999999999999999983
No 387
>3plo_X DNA-invertase; resolvase, helix-turn-helix, serine recombinase, recombination; 3.80A {Enterobacteria phage MU}
Probab=54.02 E-value=2.7 Score=38.33 Aligned_cols=38 Identities=11% Similarity=0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHH
Q 011992 413 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYR 455 (473)
Q Consensus 413 ER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~K 455 (473)
-+.|+.++ . .|.|..+||+.||+|.+||..++.+.-..
T Consensus 148 v~~i~~l~-~----~G~s~~~Ia~~l~vs~~T~yr~l~~~~~~ 185 (193)
T 3plo_X 148 WEQAGRLL-A----QGIPRKQVALIYDVALSTLYKKHPAKRAH 185 (193)
T ss_dssp -------------------------------------------
T ss_pred HHHHHHHH-H----CCCCHHHHHHHHCcCHHHHHHHHhhhHHh
Confidence 34555553 3 68999999999999999998877654433
No 388
>2rek_A Putative TETR-family transcriptional regulator; sulfur, SAD, structural genomics, PSI-2, protein structure initiative; 1.86A {Streptomyces coelicolor A3}
Probab=54.00 E-value=68 Score=27.50 Aligned_cols=58 Identities=14% Similarity=0.200 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHV 344 (473)
Q Consensus 287 kle~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sI 344 (473)
+|-.+-.++..+.|=..|..+||+.+|++...+.......+..+..++..+...+...
T Consensus 20 ~Il~aA~~lf~~~G~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~ 77 (199)
T 2rek_A 20 RIIEAAAAEVARHGADASLEEIARRAGVGSATLHRHFPSRWGLLQAVFQERVAQLCDE 77 (199)
T ss_dssp HHHHHHHHHHHHHGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCCHHHHHHHhCCchHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence 4455555565665556899999999999999999888776666666666665554443
No 389
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=53.94 E-value=18 Score=34.64 Aligned_cols=45 Identities=9% Similarity=-0.045 Sum_probs=34.9
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
.|++.|-.||..-+. .+|.+.|..|||+.++++.++|..++.+--
T Consensus 155 gLt~~q~~vL~~L~~-~~~~~~t~~eLa~~l~i~~~tvt~~v~rLe 199 (250)
T 1p4x_A 155 TLSFVEFTILAIITS-QNKNIVLLKDLIETIHHKYPQTVRALNNLK 199 (250)
T ss_dssp SSCHHHHHHHHHHHT-TTTCCEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHh-CCCCCcCHHHHHHHHCCChhhHHHHHHHHH
Confidence 599999888876654 222358999999999999999988665533
No 390
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=53.88 E-value=13 Score=34.32 Aligned_cols=29 Identities=24% Similarity=0.499 Sum_probs=24.9
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ +-.|+|+.||||+.+||. |++.|..
T Consensus 28 G~~LPsE~eLa~~~gVSR~tVRe----AL~~L~~ 57 (239)
T 1hw1_A 28 GTILPAERELSELIGVTRTTLRE----VLQRLAR 57 (239)
T ss_dssp TSBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 5777 899999999999999998 7777664
No 391
>1fjl_A Paired protein; DNA-binding protein, paired BOX, transcription regulation; HET: DNA; 2.00A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 3a01_B
Probab=53.82 E-value=22 Score=27.73 Aligned_cols=52 Identities=12% Similarity=0.074 Sum_probs=36.7
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSL 460 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L 460 (473)
+++.+..+|.-.|..+.. ......+||..+|+++..|..+...-..+.|...
T Consensus 25 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~rk~~ 77 (81)
T 1fjl_A 25 FSASQLDELERAFERTQYPDIYTREELAQRTNLTEARIQVWFQNRRARLRKQH 77 (81)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHCcCHHHHHHHHHHHhhhhhhhc
Confidence 556666666666652211 1223568999999999999999988888887653
No 392
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=53.63 E-value=42 Score=29.87 Aligned_cols=24 Identities=21% Similarity=0.344 Sum_probs=20.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
-.+|.++||..+|+|+++|+.+++
T Consensus 176 ~~~t~~~lA~~lg~sr~tvsR~l~ 199 (227)
T 3d0s_A 176 HDLTQEEIAQLVGASRETVNKALA 199 (227)
T ss_dssp CCCCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCCHHHHHHHhCCcHHHHHHHHH
Confidence 358999999999999999987544
No 393
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=53.47 E-value=8.1 Score=31.44 Aligned_cols=25 Identities=16% Similarity=0.158 Sum_probs=22.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+++..|+|+..|||+++++.|++.
T Consensus 31 ~GikQ~eLAK~iGIsqsTLSaIenG 55 (83)
T 2l1p_A 31 KDMNQSSLAKECPLSQSMISSIVNS 55 (83)
T ss_dssp TTSCHHHHHHHSSSCHHHHHHHHTC
T ss_pred HhcCHHHHHHHcCCCHHHHHHHHcC
Confidence 3799999999999999999998764
No 394
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=53.36 E-value=12 Score=35.32 Aligned_cols=27 Identities=19% Similarity=0.380 Sum_probs=23.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.++++.|||+.+|+++++|..++..
T Consensus 18 ~~~~~s~~ela~~~gl~~stv~r~l~~ 44 (241)
T 2xrn_A 18 HPHGLSLAAIAQLVGLPRSTVQRIINA 44 (241)
T ss_dssp CTTCEEHHHHHHHTTSCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 335799999999999999999887654
No 395
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=53.04 E-value=22 Score=33.75 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=22.4
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+.|..|||+.+|+++++|+..+.+
T Consensus 177 ~~~t~~~la~~~~l~~~~V~~~l~~ 201 (232)
T 2qlz_A 177 GRATVEELSDRLNLKEREVREKISE 201 (232)
T ss_dssp SEEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhCcCHHHHHHHHHH
Confidence 6899999999999999999986543
No 396
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=53.02 E-value=15 Score=34.48 Aligned_cols=45 Identities=16% Similarity=0.228 Sum_probs=32.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+++.....|...|.| +++.+..+||+.||+|+.+|+. ++++|++
T Consensus 12 ~ls~s~EdYLk~I~~L--~~~V~~~~LA~~LgvS~~SV~~----~lkkL~e 56 (200)
T 2p8t_A 12 YPEYTVEDVLAVIFLL--KEPLGRKQISERLELGEGSVRT----LLRKLSH 56 (200)
T ss_dssp --CCCHHHHHHHHHHT--TSCBCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCCCHHHHHHHHHHH--cCCccHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 3555555555555555 2678999999999999999998 5566654
No 397
>3rkq_A Homeobox protein NKX-2.5; helix-turn-helix, DNA binding, nucleus, transcription-DNA CO; 1.70A {Homo sapiens}
Probab=52.86 E-value=20 Score=25.77 Aligned_cols=48 Identities=10% Similarity=0.174 Sum_probs=33.8
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRL 456 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KL 456 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.
T Consensus 9 ~t~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~ 57 (58)
T 3rkq_A 9 FSQAQVYELERRFKQQRYLSAPERDQLASVLKLTSTQVKIWFQNRRYKS 57 (58)
T ss_dssp CCHHHHHHHHHHHTTCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHHHHhhHHhhccC
Confidence 566777777777752221 223456889999999999999887765553
No 398
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=52.84 E-value=41 Score=31.13 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=22.3
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+. ++++|++
T Consensus 217 ~lt~~~lA~~lG~sr~tvsR----~l~~L~~ 243 (260)
T 3kcc_A 217 KITRQEIGQIVGCSRETVGR----ILKMLED 243 (260)
T ss_dssp ECCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 57999999999999999976 4555554
No 399
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=52.78 E-value=11 Score=34.53 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.0
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+.++-.++|+.||||+..||. |+.+|..
T Consensus 32 pG~~L~e~~La~~lgVSRtpVRE----AL~~L~~ 61 (218)
T 3sxy_A 32 LGEKLNVRELSEKLGISFTPVRD----ALLQLAT 61 (218)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCEeCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 36889999999999999999998 7777765
No 400
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=52.67 E-value=12 Score=32.06 Aligned_cols=29 Identities=17% Similarity=0.221 Sum_probs=24.0
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |..++|+.||||+.+|+. |+..|..
T Consensus 25 G~~LPse~~La~~~gvSr~tVr~----Al~~L~~ 54 (129)
T 2ek5_A 25 DQRVPSTNELAAFHRINPATARN----GLTLLVE 54 (129)
T ss_dssp TSCBCCHHHHHHHTTCCHHHHHH----HHHHHHT
T ss_pred CCcCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4666 999999999999999988 6666654
No 401
>1ftt_A TTF-1 HD, thyroid transcription factor 1 homeodomain; DNA binding protein; NMR {Rattus norvegicus} SCOP: a.4.1.1
Probab=52.43 E-value=23 Score=26.78 Aligned_cols=53 Identities=11% Similarity=0.182 Sum_probs=38.5
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|....
T Consensus 9 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kr~~~ 62 (68)
T 1ftt_A 9 FSQAQVYELERRFKQQKYLSAPEREHLASMIHLTPTQVKIWFQNHRYKMKRQAK 62 (68)
T ss_dssp CCHHHHHHHHHHHHHSSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHHHHHhCCCCCHHHHHHHHHHhCCCHHHhHHHhHHHhhhhhhhhh
Confidence 566667777777753221 22345789999999999999999888888876544
No 402
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=52.33 E-value=68 Score=24.26 Aligned_cols=47 Identities=19% Similarity=0.253 Sum_probs=32.3
Q ss_pred CHHHHHHHcCCCHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q 011992 304 TLIEWAKAIGLSCRDLKSELHSGN-SSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (473)
Q Consensus 304 T~eEiA~~lGms~eeL~~~l~~g~-~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQ 360 (473)
|..++|+.+|++...|.++..+.. .. ....+.++|..+ +++.++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g~~~~p-------~~~~l~~ia~~l---~v~~~~l~~ 76 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETGRIATP-------AFFTIAAVARVL---DLSLDDVAA 76 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTTCCSSC-------BHHHHHHHHHHT---TCCHHHHHT
T ss_pred CHHHHHHHhCCCHHHHHHHHcCCCCCC-------CHHHHHHHHHHh---CCCHHHHhc
Confidence 889999999999999998887653 21 123355556554 556666653
No 403
>2dms_A Homeobox protein OTX2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=52.31 E-value=17 Score=28.38 Aligned_cols=54 Identities=13% Similarity=0.023 Sum_probs=39.2
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhcc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLGG 462 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~~ 462 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|.....
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNRR~k~rk~~~~ 68 (80)
T 2dms_A 14 FTRAQLDVLEALFAKTRYPDIFMREEVALKINLPESRVQVWFKNRRAKCRQQQQQ 68 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHTHHHHTTCS
T ss_pred CCHHHHHHHHHHHHccCCCCHHHHHHHHHHHCcCHHHhhhhhHHHhHHhhHHHHc
Confidence 566667777777653221 222457899999999999999999888888876543
No 404
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=52.29 E-value=16 Score=31.80 Aligned_cols=43 Identities=7% Similarity=0.013 Sum_probs=29.0
Q ss_pred CCHHHHHHHHHHhhcc--CCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIE--DGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L~--~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|+.+-...|+.-.+|. +++..|.+|||+.+|+|...|++++.+
T Consensus 9 ls~~~~yAl~~L~~La~~~~~~~~~~~iA~~~~i~~~~l~kil~~ 53 (149)
T 1ylf_A 9 ISSRFSIAVHILSILKNNPSSLCTSDYMAESVNTNPVVIRKIMSY 53 (149)
T ss_dssp CCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHhCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 5555444443322222 346799999999999999999886543
No 405
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=52.22 E-value=14 Score=34.65 Aligned_cols=30 Identities=33% Similarity=0.571 Sum_probs=25.5
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+.++..++|+.||||+.+||. |+..|..
T Consensus 46 pG~~L~e~~La~~lgVSr~~VRe----AL~~L~~ 75 (237)
T 3c7j_A 46 SGTALRQQELATLFGVSRMPVRE----ALRQLEA 75 (237)
T ss_dssp TTCBCCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred CcCeeCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 45889999999999999999987 6666654
No 406
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=52.13 E-value=18 Score=34.20 Aligned_cols=33 Identities=24% Similarity=0.184 Sum_probs=25.4
Q ss_pred HHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 419 LRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 419 LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|.++-..+.++++.|||+.+|+++++|..+++.
T Consensus 20 L~~l~~~~~~~~~~eia~~~gl~~stv~r~l~~ 52 (257)
T 2g7u_A 20 LLAFDAQRPNPTLAELATEAGLSRPAVRRILLT 52 (257)
T ss_dssp HHTCSSSCSSCBHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 344323346899999999999999999887654
No 407
>3e7q_A Transcriptional regulator; structural genomics, PSI, MCSG, P structure initiative, midwest center for structural genomic binding; 2.20A {Pseudomonas aeruginosa}
Probab=51.96 E-value=1.1e+02 Score=26.01 Aligned_cols=77 Identities=9% Similarity=-0.028 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh-cCCcchhhHhhhhH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ-GRGISLHDLLQEGS 363 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~-~~~~saEDLiQEg~ 363 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+..+..++..+...+........ ....+..+.+...+
T Consensus 18 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 96 (215)
T 3e7q_A 18 LLIEATLACLKRHGFQGASVRKICAEAGVSVGLINHHYDGKDALVAEAYLAVTGRVMRLLRGAIDTAPGGARPRLSAFF 96 (215)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 44555555666666 4689999999999999999998887777777777776665555544432 22445544444433
No 408
>2ovg_A Phage lambda CRO; transcription factor, helix-turn-helix, bacteriophage, flexi transcription; 1.35A {Enterobacteria phage lambda} PDB: 2ecs_A 1cop_D 4cro_A* 5cro_O 1orc_A 2orc_A 2a63_A 1d1l_A 6cro_A* 3orc_A* 1d1m_B
Probab=51.91 E-value=12 Score=28.71 Aligned_cols=21 Identities=10% Similarity=0.143 Sum_probs=19.6
Q ss_pred CHHHHHHHHCCCHHHHHHHHH
Q 011992 430 SLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 430 TlkEIAe~LGIS~~rVrqi~~ 450 (473)
++.+.|+.||||..+|++.++
T Consensus 15 s~t~aA~~L~vtQ~AVS~~ir 35 (66)
T 2ovg_A 15 GQTKTAKDLGVYPSSINQAIH 35 (66)
T ss_dssp CHHHHHHHHTSCHHHHHHHHH
T ss_pred CHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999999863
No 409
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=51.76 E-value=18 Score=29.56 Aligned_cols=26 Identities=19% Similarity=0.396 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+++++.+||+.+|+|+.++..+.++.
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 47 (113)
T 3oio_A 22 EPLSTDDIAYYVGVSRRQLERLFKQY 47 (113)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 77999999999999999999888875
No 410
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=50.78 E-value=21 Score=29.50 Aligned_cols=44 Identities=9% Similarity=0.024 Sum_probs=35.7
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..|++.|+.|+.+... .+.+|...++|...+|++..+|..++.+
T Consensus 33 ~~Lt~~E~lVy~~I~~-aGn~GIw~kdL~~~tnL~~~~vtkiLK~ 76 (95)
T 2yu3_A 33 KGSDNQEKLVYQIIED-AGNKGIWSRDVRYKSNLPLTEINKILKN 76 (95)
T ss_dssp CSCSHHHHHHHHHHHH-HTTSCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHH-hCCCCCCHHHHHHHhCCCHHHHHHHHHH
Confidence 5689999999888775 3348999999999999999887765443
No 411
>2xdn_A HTH-type transcriptional regulator TTGR; transcription regulation, TETR family; 2.20A {Pseudomonas putida} PDB: 2uxu_A* 2uxi_A* 2uxo_A* 2uxp_A* 2uxh_A*
Probab=50.70 E-value=1e+02 Score=26.71 Aligned_cols=58 Identities=12% Similarity=0.145 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHV 344 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sI 344 (473)
+|-++-.+|..+.| ..-|..+||+..|++...+.......+.-+..++..+...+...
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~~~~~~~~~~~~~~ 73 (210)
T 2xdn_A 15 QIIEAAERAFYKRGVARTTLADIAELAGVTRGAIYWHFNNKAELVQALLDSLAETHDHL 73 (210)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCTTHHHHHCSSHHHHHHHHHHHHHHTTHHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHHCCChHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 56666677777888 45889999999999999998888776666666666665444333
No 412
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=50.49 E-value=28 Score=31.45 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=24.3
Q ss_pred HHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHH
Q 011992 292 KSKLQSQFGREPTLIEWAKAIGLSCRDLKSEL 323 (473)
Q Consensus 292 ~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l 323 (473)
..++..+.|.+||..|||+.+|++...+.+.+
T Consensus 14 I~~~~~~~g~~~s~~eia~~lgl~~~tv~~~l 45 (196)
T 3k2z_A 14 IEEFIEKNGYPPSVREIARRFRITPRGALLHL 45 (196)
T ss_dssp HHHHHHHHSSCCCHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHhCCCCCHHHHHHHcCCCcHHHHHHH
Confidence 33445678999999999999999966555443
No 413
>1ntc_A Protein (nitrogen regulation protein (NTRC)); helix-turn-helix, FIS, four-helix bundle, transcription regulation; NMR {Salmonella typhimurium} SCOP: a.4.1.12
Probab=50.48 E-value=10 Score=30.44 Aligned_cols=37 Identities=11% Similarity=0.144 Sum_probs=24.8
Q ss_pred HHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 412 KERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 412 rER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
-|+.+|...+.. .+-+..+.|+.||||+.++...+++
T Consensus 51 ~E~~~i~~aL~~---~~gn~~~aA~~LGIsr~tL~rklkk 87 (91)
T 1ntc_A 51 LERTLLTTALRH---TQGHKQEAARLLGWGAATLTAKLKE 87 (91)
T ss_dssp HHHHHHHHHHHH---TTTCTTHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHH---hCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555443321 2446779999999999999766543
No 414
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=50.39 E-value=17 Score=33.64 Aligned_cols=43 Identities=26% Similarity=0.305 Sum_probs=30.2
Q ss_pred HHhhCC-HHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 405 LLTLLN-PKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 405 aL~~Lp-erER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.+..|. +....||.+-.. .+++..|||+.+|+|.++|++++++
T Consensus 8 ilkaL~~~~rl~IL~~L~~----~~~s~~eLa~~l~is~stvs~hLk~ 51 (202)
T 2p4w_A 8 LLDVLGNETRRRILFLLTK----RPYFVSELSRELGVGQKAVLEHLRI 51 (202)
T ss_dssp HHHHHHSHHHHHHHHHHHH----SCEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHh----CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 333443 444555554433 6899999999999999999986543
No 415
>3rjp_A COVR; winged helix-turn-helix, DNA binding, DNA binding protein; 1.50A {Streptococcus pyogenes}
Probab=50.35 E-value=39 Score=26.65 Aligned_cols=49 Identities=8% Similarity=0.020 Sum_probs=36.4
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|..+|.+-.. +.|+-.|.++|.+.+ ..+..+|.+.+++-++||.
T Consensus 22 ~Lt~~E~~lL~~L~~-~~g~~vsr~~L~~~vw~~~~~~~~~~l~~~I~rLRkkL~ 75 (96)
T 3rjp_A 22 SLTKREYDLLNILMT-NMNRVMTREELLSNVWKYDEAVETNVVDVYIRYLRGKID 75 (96)
T ss_dssp ECCHHHHHHHHHHHH-TTTSCBCHHHHHHHHSSSCSSCCTHHHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHh-CCCeeEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhc
Confidence 489999998876553 556889999999988 2677788776666555554
No 416
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=50.30 E-value=8.5 Score=33.68 Aligned_cols=39 Identities=5% Similarity=0.134 Sum_probs=26.4
Q ss_pred CCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 409 LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+.+.+++++..... +.+.+..+||+.||+|+.+|+..+.
T Consensus 140 ~~~~~~~~~~~~~~---~~~~~~~~ia~~l~is~~tv~~~l~ 178 (184)
T 3rqi_A 140 VDRLEWEHIQRVLA---ENNNNISATARALNMHRRTLQRKLA 178 (184)
T ss_dssp ---CHHHHHHHHHH---HTTSCHHHHHHHHTSCHHHHHHHHC
T ss_pred HHHHHHHHHHHHHH---hccccHHHHHHHcCCcHHHHHHHHH
Confidence 44455555544332 1588999999999999999987543
No 417
>3dn7_A Cyclic nucleotide binding regulatory protein; structural genomics, APC88869, cyclic nucleotide binding REG protein, PSI-2; 1.80A {Cytophaga hutchinsonii}
Probab=50.24 E-value=7.8 Score=33.92 Aligned_cols=25 Identities=8% Similarity=0.243 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
..+|.++||..+|+|+++|+.++++
T Consensus 167 ~~~t~~~iA~~lG~sretlsR~l~~ 191 (194)
T 3dn7_A 167 QRVPQYLLASYLGFTPEYLSEIRKK 191 (194)
T ss_dssp -------------------------
T ss_pred HHCCHHHHHHHhCCCHHHHHHHHHh
Confidence 5789999999999999999987765
No 418
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=50.22 E-value=36 Score=30.52 Aligned_cols=24 Identities=21% Similarity=0.286 Sum_probs=20.4
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
++|.++||..+|+|+++|+.++++
T Consensus 178 ~~t~~~iA~~lg~sr~tvsR~l~~ 201 (237)
T 3fx3_A 178 PYDKMLIAGRLGMKPESLSRAFSR 201 (237)
T ss_dssp CSCTHHHHHHTTCCHHHHHHHHHH
T ss_pred cCCHHHHHHHhCCCHHHHHHHHHH
Confidence 578999999999999999875543
No 419
>2k9s_A Arabinose operon regulatory protein; activator, arabinose catabolism, carbohydrate metabolism, cytoplasm, DNA-binding, repressor, transcription; NMR {Escherichia coli}
Probab=49.93 E-value=38 Score=27.19 Aligned_cols=26 Identities=19% Similarity=0.201 Sum_probs=23.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
+.+++.+||+.+|+|+.++..+.++.
T Consensus 19 ~~~~~~~lA~~~~~S~~~l~r~fk~~ 44 (107)
T 2k9s_A 19 SNFDIASVAQHVCLSPSRLSHLFRQQ 44 (107)
T ss_dssp SSCCHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Confidence 68999999999999999999888775
No 420
>1vz0_A PARB, chromosome partitioning protein PARB; nuclear protein, chromosome segregation, DNA-binding, helix-turn-helix; 2.3A {Thermus thermophilus} SCOP: a.4.14.1 d.268.1.1
Probab=49.65 E-value=21 Score=33.74 Aligned_cols=53 Identities=15% Similarity=0.001 Sum_probs=35.5
Q ss_pred hhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHH--HHHHHHHhcc
Q 011992 407 TLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRA--LYRLKQSLGG 462 (473)
Q Consensus 407 ~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RA--L~KLR~~L~~ 462 (473)
..|++-|+-....+.. ..++|.++||+.+|+|+.+|++.+.-+ -..+++.+..
T Consensus 116 ~~L~~~E~a~~~~~l~---~~g~t~~~iA~~lG~s~~~V~~~l~l~~l~~~v~~~l~~ 170 (230)
T 1vz0_A 116 EDLSPVEEARGYQALL---EMGLTQEEVARRVGKARSTVANALRLLQLPPEALEALER 170 (230)
T ss_dssp TTCCHHHHHHHHHHHH---HTTCCHHHHHHHHTCCHHHHHHHHHGGGSCHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHHH---HcCCCHHHHHHHHCcCHHHHHHHHHHHcCCHHHHHHHHc
Confidence 3577777665433332 157999999999999999999876532 1344444444
No 421
>2ofy_A Putative XRE-family transcriptional regulator; transcription regulator, structural genomics, PS protein structure initiative; 1.70A {Rhodococcus SP} SCOP: a.35.1.3
Probab=49.63 E-value=18 Score=27.62 Aligned_cols=22 Identities=32% Similarity=0.407 Sum_probs=20.7
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 011992 430 SLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 430 TlkEIAe~LGIS~~rVrqi~~R 451 (473)
|..|+|+.+|||.++|+++++.
T Consensus 29 sq~~lA~~~gis~~~is~~E~g 50 (86)
T 2ofy_A 29 SMVTVAFDAGISVETLRKIETG 50 (86)
T ss_dssp CHHHHHHHHTCCHHHHHHHHTT
T ss_pred CHHHHHHHhCCCHHHHHHHHcC
Confidence 9999999999999999999874
No 422
>1uhs_A HOP, homeodomain only protein; structural genomics, cardiac development, riken structural genomics/proteomics initiative, RSGI, transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=49.60 E-value=28 Score=26.47 Aligned_cols=53 Identities=19% Similarity=0.320 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHhhc-cCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L-~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|.- +.. ......+||..+|+++..|..+...-..+.|..-.
T Consensus 8 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~rk~~~ 62 (72)
T 1uhs_A 8 MTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 62 (72)
T ss_dssp CCHHHHHHHHHHHHSSCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHCcCHHHhhHHhHHHHHHHhhhcc
Confidence 567777788777751 211 12235689999999999999999888888877543
No 423
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=49.51 E-value=22 Score=29.58 Aligned_cols=26 Identities=19% Similarity=0.235 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHC--CCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFG--LSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LG--IS~~rVrqi~~RA 452 (473)
...|..+|+..|| +|.++|+.++.+.
T Consensus 76 ~~~s~~~i~~~lg~~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 76 SCKTARDIRNELQLSASKRTILNVIKRS 103 (141)
T ss_dssp CCCCHHHHHHHTTCCSCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHCCCccHHHHHHHHHHC
Confidence 4589999999999 8999999998763
No 424
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=49.48 E-value=13 Score=33.37 Aligned_cols=28 Identities=25% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+. ++++|++
T Consensus 174 ~~~t~~~iA~~lg~sr~tvsR----~l~~L~~ 201 (231)
T 3e97_A 174 LPLGTQDIMARTSSSRETVSR----VLKRLEA 201 (231)
T ss_dssp ECCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCCHHHHHHHhCCcHHHHHH----HHHHHHH
Confidence 368999999999999999987 4555554
No 425
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=49.45 E-value=17 Score=31.18 Aligned_cols=25 Identities=16% Similarity=0.228 Sum_probs=21.9
Q ss_pred CCCCHHHHHHHH-CCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIF-GLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~L-GIS~~rVrqi~~R 451 (473)
.++++.||++.+ ||+.++|++++.+
T Consensus 47 g~~~~~eLa~~l~gis~~tls~~L~~ 72 (131)
T 1yyv_A 47 GTHRFSDLRRXMGGVSEXMLAQSLQA 72 (131)
T ss_dssp CCEEHHHHHHHSTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHhccCCHHHHHHHHHH
Confidence 579999999999 7999999986654
No 426
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=49.40 E-value=56 Score=29.71 Aligned_cols=28 Identities=18% Similarity=0.223 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+. ++++|++
T Consensus 192 ~~lt~~~lA~~lG~sr~tvsR----~l~~L~~ 219 (243)
T 3la7_A 192 LKLSHQAIAEAIGSTRVTVTR----LLGDLRE 219 (243)
T ss_dssp SCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred ccCCHHHHHHHHCCcHHHHHH----HHHHHHH
Confidence 367999999999999999987 4555554
No 427
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=49.16 E-value=23 Score=34.94 Aligned_cols=38 Identities=18% Similarity=0.310 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHH
Q 011992 410 NPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 410 perER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
.++...|+.+- ..+...|.+|||+.||||+.+|++.+.
T Consensus 4 ~~r~~~Il~~L---~~~~~~s~~eLa~~l~vS~~ti~r~l~ 41 (321)
T 1bia_A 4 NTVPLKLIALL---ANGEFHSGEQLGETLGMSRAAINKHIQ 41 (321)
T ss_dssp CHHHHHHHHHH---TTSSCBCHHHHHHHHTSCHHHHHHHHH
T ss_pred chHHHHHHHHH---HcCCCcCHHHHHHHHCCCHHHHHHHHH
Confidence 45566666543 234679999999999999999988665
No 428
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=49.10 E-value=10 Score=31.42 Aligned_cols=26 Identities=15% Similarity=0.318 Sum_probs=23.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
++|..|+|+.+|||..+++.....++
T Consensus 1 ~~~i~e~A~~~gvs~~tLR~ye~~Gl 26 (108)
T 2vz4_A 1 SYSVGQVAGFAGVTVRTLHHYDDIGL 26 (108)
T ss_dssp CBCHHHHHHHHTCCHHHHHHHHHHTS
T ss_pred CCCHHHHHHHHCcCHHHHHHHHHCCC
Confidence 37899999999999999999987754
No 429
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=49.06 E-value=25 Score=31.41 Aligned_cols=44 Identities=20% Similarity=0.221 Sum_probs=30.6
Q ss_pred hCCHHHHHHHHHHhhc---cCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGI---EDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 408 ~LperER~VL~LrY~L---~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|+.+.+..|+.-.+| .++...|.+|||+.+|+|+..|++++.+
T Consensus 21 ~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~~i~~~~l~kil~~ 67 (159)
T 3lwf_A 21 KITTKGRYGLTITLELAKRIGDGPISLRSIAQDKNLSEHYLEQLIGP 67 (159)
T ss_dssp CCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred eCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 3566666655443333 2345689999999999999999886543
No 430
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=48.65 E-value=36 Score=32.31 Aligned_cols=102 Identities=14% Similarity=0.127 Sum_probs=58.9
Q ss_pred HhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccC
Q 011992 298 QFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQA 377 (473)
Q Consensus 298 ~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~k 377 (473)
--|.+.+.+++|+.++++..++..++.. |...|.. .++++.+-. -..
T Consensus 26 ~a~epvs~~~La~~l~~~~~~v~~~l~~-------L~~~y~~---------~~rGiel~~-----------------v~~ 72 (219)
T 2z99_A 26 VIDTPVTADALAAATEQPVYRVAAKLQL-------MADELTG---------RDSGIDLRH-----------------TSE 72 (219)
T ss_dssp HCSSCBCHHHHHHHHTSCHHHHHHHHHH-------HHHHHHH---------TTCSEEEEE-----------------ETT
T ss_pred HcCCCCCHHHHHHHHCcCHHHHHHHHHH-------HHHHHhh---------CCCCEEEEE-----------------ECC
Confidence 3588999999999999988777654432 2222210 123333221 234
Q ss_pred CCccccCCCCCchHHHHHHHHHHHHHH-HHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHCCCH
Q 011992 378 GCRFANTGVEIPDISVQKQLMRQHVRN-LLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFGLSK 442 (473)
Q Consensus 378 g~~FsT~~~~~pee~le~~el~e~L~~-aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LGIS~ 442 (473)
|++|.|... .. ..+...+.. .-..|+.-.-++|.+..+ .++.|-.||+++.|++.
T Consensus 73 gy~l~T~~e----~~---~~v~~~~~~~~~~~Ls~aaLEtLaiIAy---~QPITR~eI~~irGv~~ 128 (219)
T 2z99_A 73 GWRMYTRAR----FA---PYVEKLLLDGARTKLTRAALETLAVVAY---RQPVTRARVSAVRGVNV 128 (219)
T ss_dssp EEEEEECGG----GH---HHHHHHHHHHHSCCCCHHHHHHHHHHHH---HCSEEHHHHHHHHTSCC
T ss_pred EEEEEEcHH----HH---HHHHHHhcccccCccCHHHHHHHHHHHH---cCCcCHHHHHHHHCCCH
Confidence 566665221 11 111122211 124588887777765333 27999999999999986
No 431
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=48.58 E-value=19 Score=34.28 Aligned_cols=26 Identities=27% Similarity=0.201 Sum_probs=22.8
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 426 ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+.++++.|||+.+|+++++|..+++.
T Consensus 36 ~~~~~~~eia~~~gl~kstv~r~l~t 61 (260)
T 2o0y_A 36 HPTRSLKELVEGTKLPKTTVVRLVAT 61 (260)
T ss_dssp BSSBCHHHHHHHHCCCHHHHHHHHHH
T ss_pred CCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 36899999999999999999886653
No 432
>3gzi_A Transcriptional regulator, TETR family; TETR family transcriptional regulator, structural genomics, center for structural genomics, JCSG; 2.05A {Shewanella loihica pv-4}
Probab=48.35 E-value=1.3e+02 Score=25.91 Aligned_cols=63 Identities=13% Similarity=-0.006 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHh
Q 011992 286 IRLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQY 348 (473)
Q Consensus 286 ~kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry 348 (473)
.+|-.+-.++..+.|= ..|..+||+.+|++...+.......+..+..++..+...+.......
T Consensus 20 ~~Il~aA~~l~~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~ 83 (218)
T 3gzi_A 20 DKLILAARNLFIERPYAQVSIREIASLAGTDPGLIRYYFGSKEKLFSTMIHETAMPVLAQLHKA 83 (218)
T ss_dssp HHHHHHHHHHHHTSCCSCCCHHHHHHHHTSCTHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCcCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566666777777885 48999999999999999999988777777777777666555544443
No 433
>3b81_A Transcriptional regulator, ACRR family; NP_350189.1, predicted DNA-binding transcriptional regulator TETR/ACRR family; 2.10A {Clostridium acetobutylicum atcc 824}
Probab=48.26 E-value=93 Score=26.39 Aligned_cols=73 Identities=15% Similarity=0.147 Sum_probs=49.9
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.++..+.| ...|..+||+.+|++...+.......+..+..++..+...+............+..+-+
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 88 (203)
T 3b81_A 15 ELANKIWDIFIANGYENTTLAFIINKLGISKGALYHYFSSKEECADAAIENRVAFFSNEVLKESEEGLNSIERL 88 (203)
T ss_dssp HHHHHHHHHHHHHCSTTCCHHHHHHHHTCCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHCCTTCCHHHHH
T ss_pred HHHHHHHHHHHHcCcccCcHHHHHHHhCCCchhHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 45566666777777 46899999999999999998888776676777777666655554444322233444444
No 434
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=48.24 E-value=14 Score=33.09 Aligned_cols=28 Identities=21% Similarity=0.339 Sum_probs=22.8
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-.+|.++||..+|+|+++|+.+ +++|++
T Consensus 166 ~~~t~~~lA~~lg~sr~tvsR~----l~~l~~ 193 (220)
T 2fmy_A 166 LGLNTEEIALMLGTTRQTVSVL----LNDFKK 193 (220)
T ss_dssp CSSCHHHHHHHHTSCHHHHHHH----HHHHHH
T ss_pred ccCCHHHHHHHhCCcHHHHHHH----HHHHHH
Confidence 4689999999999999999774 455554
No 435
>1puf_A HOX-1.7, homeobox protein HOX-A9; homeodomian, protein-DNA complex, HOX hexapeptide, TALE homeodomain, homeodomain interaction; 1.90A {Mus musculus} SCOP: a.4.1.1 PDB: 1san_A
Probab=48.14 E-value=30 Score=26.74 Aligned_cols=53 Identities=11% Similarity=0.091 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|....
T Consensus 20 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~~k 73 (77)
T 1puf_A 20 YTKHQTLELEKEFLFNMYLTRDRRYEVARLLNLTERQVKIWFQNRRMKMKKINK 73 (77)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhhh
Confidence 455555666666542211 22245689999999999999999888887776543
No 436
>2da2_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=47.94 E-value=12 Score=28.33 Aligned_cols=50 Identities=10% Similarity=0.135 Sum_probs=35.6
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|.
T Consensus 14 ft~~q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNrR~k~kk 64 (70)
T 2da2_A 14 FTDYQLRVLQDFFDANAYPKDDEFEQLSNLLNLPTRVIVVWFQNARQKARK 64 (70)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHSCCCHHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCCCHHHhHHhhHhhhHHHhh
Confidence 566666777766653221 22245688999999999999999887777664
No 437
>2pmu_A Response regulator PHOP; winged helix-TUN-HELX, transcription regulation; 1.78A {Mycobacterium tuberculosis}
Probab=47.82 E-value=29 Score=28.40 Aligned_cols=49 Identities=18% Similarity=0.133 Sum_probs=37.3
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|..+|.+-.. ..|+-.|.++|.+.+ ..+..+|...+++-++||.
T Consensus 34 ~Lt~~E~~lL~~L~~-~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 87 (110)
T 2pmu_A 34 SLSPTEFTLLRYFVI-NAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRRKID 87 (110)
T ss_dssp CCCHHHHHHHHHHHH-TTTSCBCHHHHHHHHSCTTCCSSSCHHHHHHHHHHHHHC
T ss_pred ecCHHHHHHHHHHHH-CCCEEEcHHHHHHHHcCCCCCCccchHHHHHHHHHHHhc
Confidence 489999998766543 456889999999998 4677788887766666664
No 438
>3npi_A TETR family regulatory protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; 2.96A {Corynebacterium diphtheriae}
Probab=47.74 E-value=34 Score=31.02 Aligned_cols=74 Identities=15% Similarity=0.078 Sum_probs=47.1
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQ 360 (473)
+|-.+-.+|..+.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+.
T Consensus 22 ~Il~AA~~lf~~~G~~~~t~~~IA~~aGvs~~tlY~~F~sKe~Ll~av~~~~~~~~~~~~~~~~~~~~~~~~~l~ 96 (251)
T 3npi_A 22 TVLDIALSLFSELGFSDAKLEAIAKKSGMSKRMIHYHFGDKRGLYICCLEEAVRRLRPTAEEMYLASAVPVEGVR 96 (251)
T ss_dssp HHHHHHHHHHHHHHHHHCCHHHHHHHHCCCHHHHHHHHCSHHHHHHHHHHHHHHHTSCCHHHHCCSSCCHHHHHH
T ss_pred HHHHHHHHHHHHcCccccCHHHHHHHHCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence 34455555666666 468999999999999999999888766666666666555443333333333333333333
No 439
>1umq_A Photosynthetic apparatus regulatory protein; DNA-binding protein, response regulator, DNA binding domain, helix-turn-helix; NMR {Rhodobacter sphaeroides} SCOP: a.4.1.12
Probab=47.67 E-value=16 Score=29.33 Aligned_cols=23 Identities=9% Similarity=0.330 Sum_probs=19.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLES 450 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~ 450 (473)
+-+..+.|+.||||+.++...++
T Consensus 54 ~GN~s~AA~~LGISR~TLyrKLk 76 (81)
T 1umq_A 54 DRNVSETARRLNMHRRTLQRILA 76 (81)
T ss_dssp TSCHHHHHHHHTSCHHHHHHHHH
T ss_pred CCCHHHHHHHhCCCHHHHHHHHH
Confidence 45789999999999999876544
No 440
>2lk2_A Homeobox protein TGIF1; NESG, structural genomics, northeast structural genomics CON PSI-biology, transcription; NMR {Homo sapiens}
Probab=47.56 E-value=34 Score=28.04 Aligned_cols=54 Identities=17% Similarity=0.020 Sum_probs=40.0
Q ss_pred hCCHHHHHHHHHHhhcc--C--CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 408 LLNPKERCIVRLRFGIE--D--GKPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 408 ~LperER~VL~LrY~L~--~--ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
.||+....||.-.|.-. . -....-.+||+.+|+|+..|..+...+..+.+..+.
T Consensus 11 ~l~~~~~~iL~~W~~~h~~npYPs~~ek~~LA~~tgLt~~QV~~WF~NrR~R~kk~~~ 68 (89)
T 2lk2_A 11 MLPKESVQILRDWLYEHRYNAYPSEQEKALLSQQTHLSTLQVCNWFINARRRLLPDML 68 (89)
T ss_dssp CCCHHHHHHHHHHHHHTSGGGSCCHHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHhhhHHH
Confidence 37888888887766510 0 022234689999999999999999999999987654
No 441
>3dew_A Transcriptional regulator, TETR family; S genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; HET: MSE; 1.75A {Geobacter sulfurreducens}
Probab=47.56 E-value=45 Score=28.32 Aligned_cols=53 Identities=19% Similarity=0.201 Sum_probs=39.5
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLR 339 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~ 339 (473)
+|-.+-.++..+.| ...|..+||+..|++...+.......+.-+..++..+..
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~ 65 (206)
T 3dew_A 12 RLMEVATELFAQKGFYGVSIRELAQAAGASISMISYHFGGKEGLYAAVLQEQFA 65 (206)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHSCHHHHHHHHHHHHHHG
T ss_pred HHHHHHHHHHhcCCcccCcHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 45566667777778 479999999999999999988887655555555555443
No 442
>2hi3_A Homeodomain-only protein; transcription; NMR {Mus musculus} SCOP: a.4.1.1
Probab=47.38 E-value=37 Score=25.88 Aligned_cols=53 Identities=19% Similarity=0.288 Sum_probs=38.2
Q ss_pred CCHHHHHHHHHHhhc-cCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGI-EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L-~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
+++.+..+|...|.. +.. ......+||..+|+++..|..+...-..+.|..-.
T Consensus 9 ft~~Q~~~Le~~F~~~~~yp~~~~r~~LA~~~~l~~~qV~~WFqNRR~k~rk~~~ 63 (73)
T 2hi3_A 9 PTEDQVEILEYNFNKVNKHPDPTTLCLIAAEAGLTEEQTQKWFKQRLAEWRRSEG 63 (73)
T ss_dssp CCHHHHHHHHHHHHHTTSSCCHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHhcc
Confidence 566677777777751 221 22246789999999999999999888888777543
No 443
>1gxq_A PHOB, phosphate regulon transcriptional regulatory protein; transcriptional activator, helix-winged-helix, sensory transduction; 2.0A {Escherichia coli} SCOP: a.4.6.1 PDB: 1gxp_A 1qqi_A 2z33_A 3t72_A
Probab=47.35 E-value=33 Score=27.70 Aligned_cols=49 Identities=14% Similarity=0.058 Sum_probs=38.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|..+|.+-.. +.|+-.|.++|.+.+ ..+..+|...+++-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~-~~g~vvsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (106)
T 1gxq_A 31 EMGPTEFKLLHFFMT-HPERVYSREQLLNHVWGTNVYVEDRTVDVHIRRLRKALE 84 (106)
T ss_dssp CCCHHHHHHHHHHHH-SCSSEECHHHHHHHHTCSSSCCCTHHHHHHHHHHHHHHG
T ss_pred EcCHHHHHHHHHHHH-CCCeeEcHHHHHHHHcCCCCCCCcccHHHHHHHHHHHhc
Confidence 389999998876543 556889999999998 4678888887777666665
No 444
>1b0n_A Protein (SINR protein); transcription regulator, antagonist, sporulation; 1.90A {Bacillus subtilis} SCOP: a.34.1.1 a.35.1.3 PDB: 2yal_A
Probab=46.96 E-value=70 Score=25.30 Aligned_cols=47 Identities=23% Similarity=0.315 Sum_probs=31.7
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhh-cchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 303 PTLIEWAKAIGLSCRDLKSELHS-GNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 303 PT~eEiA~~lGms~eeL~~~l~~-g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
-|..++|+.+|++...|.++..+ .... ....+..+|..+ +++.++++
T Consensus 15 ltq~~lA~~~gis~~~i~~~e~g~~~~p-------~~~~l~~ia~~l---~v~~~~l~ 62 (111)
T 1b0n_A 15 YSLSELAEKAGVAKSYLSSIERNLQTNP-------SIQFLEKVSAVL---DVSVHTLL 62 (111)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCCSCC-------CHHHHHHHHHHH---TCCHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHcCCCCCC-------CHHHHHHHHHHH---CcCHHHHh
Confidence 58899999999999999988877 3311 123345555554 45666655
No 445
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=46.87 E-value=21 Score=33.13 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=24.8
Q ss_pred CCCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 425 DGKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 425 ~ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+.+ +-.++|+.||||+..||. |++.|..
T Consensus 24 pG~~LpsE~~La~~lgVSRtpVRE----AL~~L~~ 54 (239)
T 2di3_A 24 IGDHLPSERALSETLGVSRSSLRE----ALRVLEA 54 (239)
T ss_dssp TTCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCcCCCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 35778 678999999999999998 7777764
No 446
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=46.76 E-value=23 Score=30.78 Aligned_cols=43 Identities=23% Similarity=0.193 Sum_probs=28.2
Q ss_pred CCHHHHHHHHHHhhc---cCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGI---EDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 409 LperER~VL~LrY~L---~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|+.+.+..|+.-.+| .++...|.+|||+.+|+|+..|++++.+
T Consensus 6 ls~~~~yAl~~L~~La~~~~~~~~s~~~IA~~~~i~~~~l~kil~~ 51 (143)
T 3t8r_A 6 ISTKGRYGLTLMISLAKKEGQGCISLKSIAEENNLSDLYLEQLVGP 51 (143)
T ss_dssp -CHHHHHHHHHHHHHHTTTTSCCEEHHHHHHHTTCCHHHHHHHHHH
T ss_pred cChHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHCcCHHHHHHHHHH
Confidence 455555544332222 1234689999999999999999986543
No 447
>1b8i_A Ultrabithorax, protein (ultrabithorax homeotic protein IV); DNA binding, homeodomain, homeotic proteins, development, specificity; HET: DNA; 2.40A {Drosophila melanogaster} SCOP: a.4.1.1 PDB: 9ant_A*
Probab=46.68 E-value=21 Score=28.01 Aligned_cols=52 Identities=10% Similarity=0.127 Sum_probs=37.6
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|+.
T Consensus 26 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~vWFqNRR~k~kk~ 78 (81)
T 1b8i_A 26 TYTRYQTLELEKEFHTNHYLTRRRRIEMAHALSLTERQIKIWFQNRRMKLKKE 78 (81)
T ss_dssp CCCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTT
T ss_pred ccCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCHHHHHHHhHHhhhhhhhh
Confidence 3667777777777653221 222457899999999999999998888877753
No 448
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=46.54 E-value=19 Score=34.38 Aligned_cols=34 Identities=18% Similarity=0.221 Sum_probs=25.9
Q ss_pred HHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 418 RLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 418 ~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
.|.++-..+.++++.|||+.+|+++++|..++..
T Consensus 26 iL~~l~~~~~~~~~~eia~~~gl~~stv~r~l~t 59 (265)
T 2ia2_A 26 VIRCFDHRNQRRTLSDVARATDLTRATARRFLLT 59 (265)
T ss_dssp HHHTCCSSCSSEEHHHHHHHHTCCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 3444323346899999999999999999987654
No 449
>1zk8_A Transcriptional regulator, TETR family; TETR member,transcriptional regulator, STRU genomics, PSI, protein structure initiative; 2.15A {Bacillus cereus atcc 14579} SCOP: a.4.1.9 a.121.1.1
Probab=46.51 E-value=87 Score=26.28 Aligned_cols=75 Identities=12% Similarity=0.178 Sum_probs=48.2
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEG 362 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg 362 (473)
+|-++-.++..+.|= ..|..+||+..|++...+.......+.-+..++..+...+......... ..+..+.+...
T Consensus 12 ~Il~aa~~l~~~~G~~~~t~~~Ia~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~ 87 (183)
T 1zk8_A 12 KIVETAAEIADANGVQEVTLASLAQTLGVRSPSLYNHVKGLQDVRKNLGIYGIKKLHNRLEEAAE-DKRMDEAIHAL 87 (183)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHHHHHHHHHT-TCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCccccCHHHHHHHcCCCchHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHh-cCCHHHHHHHH
Confidence 455566667777774 4899999999999999888877766666666666655554444433332 23444444333
No 450
>2da3_A Alpha-fetoprotein enhancer binding protein; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics; NMR {Homo sapiens}
Probab=46.40 E-value=16 Score=28.26 Aligned_cols=29 Identities=24% Similarity=0.268 Sum_probs=25.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 431 LSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 431 lkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
..+||..+|+++..|..+...-..+.|..
T Consensus 47 r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 75 (80)
T 2da3_A 47 LDHIAHEVGLKKRVVQVWFQNTRARERKS 75 (80)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHCcCHHHhHHHhHHHHHhHhhh
Confidence 46899999999999999998888887753
No 451
>3iuo_A ATP-dependent DNA helicase RECQ; C-terminal, GI PSI, MCSG, structural genomics, midwest center for structur genomics; 1.60A {Porphyromonas gingivalis}
Probab=46.24 E-value=31 Score=29.31 Aligned_cols=27 Identities=11% Similarity=0.150 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRAL 453 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL 453 (473)
+|+++.|||..-|++.++|-.++.+..
T Consensus 31 ~G~sleeIA~~R~L~~~TI~~Hl~~~v 57 (122)
T 3iuo_A 31 RKVALDDIAVSHGLDFPELLSEVETIV 57 (122)
T ss_dssp TTCCHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHcCCCHHHHHHHHHHHH
Confidence 799999999999999999988877764
No 452
>3f6w_A XRE-family like protein; helix-turn-helix, DNA binding protein, xenobiotic response E family of transcriptional regulators; HET: MSE BTB; 1.85A {Pseudomonas syringae PV}
Probab=46.21 E-value=90 Score=23.30 Aligned_cols=48 Identities=15% Similarity=0.086 Sum_probs=33.1
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q 011992 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (473)
Q Consensus 303 PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQ 360 (473)
-|..|+|+.+|++...+.++..+.... ....+..+|..+ +++.++++.
T Consensus 28 ltq~elA~~~gis~~~is~~e~g~~~~-------~~~~l~~l~~~l---~~~~~~l~~ 75 (83)
T 3f6w_A 28 ITQKELAARLGRPQSFVSKTENAERRL-------DVIEFMDFCRGI---GTDPYALLS 75 (83)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTTSSCC-------CHHHHHHHHHHH---TCCHHHHHH
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCCCC-------CHHHHHHHHHHc---CCCHHHHHH
Confidence 588999999999999999888765321 223455556555 556666653
No 453
>3vp5_A Transcriptional regulator; heme, sensor protein, TETR superf transcription; HET: HEM; 1.90A {Lactococcus lactis} PDB: 3vox_A 3vok_A*
Probab=46.20 E-value=1.1e+02 Score=26.32 Aligned_cols=63 Identities=6% Similarity=-0.017 Sum_probs=45.8
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQ 349 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~ 349 (473)
+|-.+-.++..+.|= ..|..+||+.+|++...+......-+..+..++......+........
T Consensus 16 ~Il~aa~~l~~~~G~~~~ti~~Ia~~agvs~~t~Y~~F~~K~~L~~~~~~~~~~~~~~~~~~~~ 79 (189)
T 3vp5_A 16 RVYDACLNEFQTHSFHEAKIMHIVKALDIPRGSFYQYFEDLKDAYFYVLSQETLEIHDLFFNLL 79 (189)
T ss_dssp HHHHHHHHHHHHSCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHCCcccccHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 455566667777774 689999999999999999988877666666677666655555444443
No 454
>1y7y_A C.AHDI; helix-turn-helix, DNA-binding protein, transcriptional regulator, transcription regulator; 1.69A {Aeromonas hydrophila} SCOP: a.35.1.3
Probab=45.77 E-value=82 Score=22.70 Aligned_cols=25 Identities=12% Similarity=-0.093 Sum_probs=21.5
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcc
Q 011992 303 PTLIEWAKAIGLSCRDLKSELHSGN 327 (473)
Q Consensus 303 PT~eEiA~~lGms~eeL~~~l~~g~ 327 (473)
-|..++|+.+|++...+.++..+..
T Consensus 27 ~s~~~lA~~~gis~~~i~~~e~g~~ 51 (74)
T 1y7y_A 27 LSQETLAFLSGLDRSYVGGVERGQR 51 (74)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHTTCS
T ss_pred CCHHHHHHHHCcCHHHHHHHHCCCC
Confidence 6889999999999999988877653
No 455
>3pvv_A Chromosomal replication initiator protein DNAA; helix-turn-helix motif, interacting with DNAA-BOX, DNAA-box; HET: DNA; 2.00A {Mycobacterium tuberculosis} PDB: 3pvp_A*
Probab=45.59 E-value=57 Score=27.03 Aligned_cols=31 Identities=23% Similarity=0.367 Sum_probs=24.6
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
-++|+.+||+.+|-..+||..-..+.-+.++
T Consensus 49 t~~Sl~~IG~~fgRDHsTV~ha~~ki~~~~~ 79 (101)
T 3pvv_A 49 TDLSLPKIGQAFGRDHTTVMYAQRKILSEMA 79 (101)
T ss_dssp CCCCHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 6899999999999999999885555444433
No 456
>2dn0_A Zinc fingers and homeoboxes protein 3; triple homeobox 1 protein, KIAA0395, TIX1, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.58 E-value=24 Score=27.18 Aligned_cols=51 Identities=16% Similarity=0.176 Sum_probs=36.6
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|+.
T Consensus 15 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~~WFqNrR~k~kk~ 66 (76)
T 2dn0_A 15 KSHEQLSALKGSFCRNQFPGQSEVEHLTKVTGLSTREVRKWFSDRRYHCRNL 66 (76)
T ss_dssp CCHHHHHHHHHHHHHSSSCCSHHHHHHHHHHCCCHHHHHHHHHHHHHHSSSC
T ss_pred CCHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCCChHHhhHHhHHHhHHHHHh
Confidence 455666666666653221 334567999999999999999998887776654
No 457
>3lsj_A DEST; transcriptional repressor, TETR family, DNA-binding, transcription, transcription regulation; HET: PLM COA; 2.30A {Pseudomonas aeruginosa} PDB: 3lsp_A* 3lsr_A*
Probab=45.47 E-value=24 Score=30.99 Aligned_cols=80 Identities=13% Similarity=0.072 Sum_probs=48.1
Q ss_pred HHHHHHHHHHH-HhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHH
Q 011992 287 RLEKEKSKLQS-QFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSM 364 (473)
Q Consensus 287 kle~a~~~L~~-~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~l 364 (473)
+|-.+-.+|.. +.| ...|..+||+..|++...+.......+..+..++..+...+............+..+.+...+.
T Consensus 15 ~Il~aa~~l~~~~~G~~~~ti~~Ia~~Agvs~~t~Y~~F~sK~~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 94 (220)
T 3lsj_A 15 ALMSAARHLMESGRGFGSLSLREVTRAAGIVPAGFYRHFSDMDQLGLALVAEVDETFRATLRAVRRNEFELGGLIDASVR 94 (220)
T ss_dssp HHHHHHHHHTTTSCCGGGCCHHHHHHHHTSCGGGGTTTCSSHHHHHHHHHHHHHTTHHHHHHHHTTTC--CCHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcccCCHHHHHHHhCCChhHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 55566666666 667 5799999999999998877776665555555555555554444444433333343444444333
Q ss_pred HH
Q 011992 365 GL 366 (473)
Q Consensus 365 gL 366 (473)
.+
T Consensus 95 ~~ 96 (220)
T 3lsj_A 95 IF 96 (220)
T ss_dssp HH
T ss_pred HH
Confidence 33
No 458
>1opc_A OMPR, OMPRC; transcription regulation, response regulator, winged helix, osmoregulation; 1.95A {Escherichia coli} SCOP: a.4.6.1 PDB: 1odd_A 2jpb_A
Probab=45.47 E-value=20 Score=29.20 Aligned_cols=49 Identities=14% Similarity=0.111 Sum_probs=37.0
Q ss_pred hCCHHHHHHHHHHhhccCCCCCCHHHHHHHH-----CCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDGKPKSLSEVGNIF-----GLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~ge~lTlkEIAe~L-----GIS~~rVrqi~~RAL~KLR 457 (473)
.|+++|..+|.+-.. ..|+-.|.++|.+.+ ..+..+|...+++-++||.
T Consensus 31 ~Lt~~E~~lL~~L~~-~~g~~vsr~~L~~~vW~~~~~~~~~~l~~~I~rLRkkL~ 84 (110)
T 1opc_A 31 PLTSGEFAVLKALVS-HPREPLSRDKLMNLARGREYSAMERSIDVQISRLRRMVE 84 (110)
T ss_dssp CCCHHHHHHHHHHHH-STTCCEEHHHHHHHHCCSSSCTTSSCHHHHHHHHHHHHC
T ss_pred EcCHHHHHHHHHHHH-cCCceEcHHHHHHHHcCCCCCCCcchHHHHHHHHHHHhh
Confidence 489999998876543 456889999999999 5677788886666666554
No 459
>1hkq_A REPA, replication protein; DNA binding protein, winged-helix, PPS10 plasmid, replication initiator dimer.; 2.75A {Pseudomonas syringae PV} SCOP: a.4.5.10
Probab=45.41 E-value=51 Score=28.15 Aligned_cols=60 Identities=13% Similarity=0.151 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhhccCCC---------CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 400 QHVRNLLTLLNPKERCIVRLRFGIEDGK---------PKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 400 e~L~~aL~~LperER~VL~LrY~L~~ge---------~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
..|..+.-.|+..|+.+|.+....=+.+ ..+..|+++.+|++..+..+.+..|...|.+.
T Consensus 10 N~Li~A~y~Ltl~E~rll~~~is~i~~~~~~~~~~~~~i~~~e~~~~~~~~~~~aY~~lk~a~~~L~~r 78 (132)
T 1hkq_A 10 NKLIESSHTLTLNEKRLVLCAASLIDSRKPLPKDGYLTIRADTFAEVFGIDVKHAYAALDDAATKLFNR 78 (132)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHTCCTTSCCCGGGEEEEEHHHHHHHTTCCHHHHHHHHHHHHHHHHTC
T ss_pred chHhhccCCCCHHHHHHHHHHHHhCCcCCCCCCCCEEEEEHHHHHHHHCCCcchHHHHHHHHHHHHhhC
Confidence 3455677789999999887754432111 35689999999999999999999999998753
No 460
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=45.34 E-value=17 Score=34.09 Aligned_cols=30 Identities=23% Similarity=0.315 Sum_probs=25.6
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+.++-.++|+.||||+..||. |+++|..
T Consensus 48 pG~~L~e~~La~~lgVSRtpVRE----AL~~L~~ 77 (239)
T 2hs5_A 48 PGARLSEPDICAALDVSRNTVRE----AFQILIE 77 (239)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CcCEeCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 45888999999999999999998 6666654
No 461
>3rh2_A Hypothetical TETR-like transcriptional regulator; DNA/RNA-binding 3-helical bundle, structural genomics, joint for structural genomics; 2.42A {Shewanella amazonensis}
Probab=45.27 E-value=77 Score=27.44 Aligned_cols=57 Identities=11% Similarity=0.101 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343 (473)
Q Consensus 287 kle~a~~~L~~~lGRe-PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~s 343 (473)
+|-.+-.++..+.|=. -|..+||+..|++...+.......+.-+..++..+...+..
T Consensus 7 ~Il~aA~~lf~~~G~~~~s~~~IA~~Agvs~~t~Y~~F~sK~~L~~a~~~~~~~~~~~ 64 (212)
T 3rh2_A 7 KIIQASLELFNEHGERTITTNHIAAHLDISPGNLYYHFRNKEDIIRCIFDQYEQHLLL 64 (212)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCCHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Confidence 4555566666777855 89999999999999999988876666666666655544433
No 462
>2dmt_A Homeobox protein BARH-like 1; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.18 E-value=25 Score=27.40 Aligned_cols=50 Identities=14% Similarity=0.157 Sum_probs=34.5
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|+
T Consensus 24 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~L~~~qV~vWFqNRR~k~kk 74 (80)
T 2dmt_A 24 FTELQLMGLEKRFEKQKYLSTPDRIDLAESLGLSQLQVKTWYQNRRMKWKK 74 (80)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHeeeccHHHHHHhhc
Confidence 455556666666652211 22346789999999999999999887777664
No 463
>3vib_A MTRR; helix-turn-helix motif, DNA binding, DNA binding protein; HET: CXS; 2.40A {Neisseria gonorrhoeae}
Probab=45.14 E-value=76 Score=27.51 Aligned_cols=54 Identities=17% Similarity=0.073 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRL 340 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~l 340 (473)
+|-.+-.+|..+.| ..-|..+||+..|++...+.......+.-+..++..+...
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~~t~Y~~F~sKe~L~~a~~~~~~~~ 68 (210)
T 3vib_A 14 HLMLAALETFYRKGIARTSLNEIAQAAGVTRDALYWHFKNKEDLFDALFQRICDD 68 (210)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHHHCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHHCcCHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 46667777888888 4578999999999999999988876666555555555443
No 464
>3mkl_A HTH-type transcriptional regulator GADX; PSI2, MCSG, structural genomics, protein structure initiativ midwest center for structural genomics; 2.15A {Escherichia coli}
Probab=45.09 E-value=26 Score=28.87 Aligned_cols=25 Identities=8% Similarity=0.092 Sum_probs=22.3
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+++++.+||+.+|+|+.++..+.++
T Consensus 22 ~~~~~~~lA~~~~~S~~~l~r~fk~ 46 (120)
T 3mkl_A 22 HEWTLARIASELLMSPSLLKKKLRE 46 (120)
T ss_dssp SCCCHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 7899999999999999999887654
No 465
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=45.02 E-value=31 Score=34.58 Aligned_cols=39 Identities=15% Similarity=0.139 Sum_probs=30.0
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q 011992 413 ERCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESRALY 454 (473)
Q Consensus 413 ER~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~ 454 (473)
.+.|+.+.+. ....|..|||+.+|+|..+|..+..+-+.
T Consensus 18 ~~~il~~l~~---~~~~sr~~la~~~~ls~~tv~~~v~~L~~ 56 (406)
T 1z6r_A 18 AGAVYRLIDQ---LGPVSRIDLSRLAQLAPASITKIVHEMLE 56 (406)
T ss_dssp HHHHHHHHHS---SCSCCHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH---cCCcCHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3456655443 26799999999999999999998876554
No 466
>3ivp_A Putative transposon-related DNA-binding protein; APC62618, clostridium diffic structural genomics, PSI-2, protein structure initiative; HET: PG4; 2.02A {Clostridium difficile}
Probab=44.77 E-value=61 Score=26.69 Aligned_cols=79 Identities=13% Similarity=0.173 Sum_probs=48.3
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhhhHHHHHHHhhhhCccCCCccc
Q 011992 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQEGSMGLMKSVEKFKPQAGCRFA 382 (473)
Q Consensus 303 PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQEg~lgL~kAiekFDp~kg~~Fs 382 (473)
-|..++|+.+|++...+.++..+.... ....+..+|..+ +++.++++... .
T Consensus 26 lsq~~lA~~~gis~~~is~~E~g~~~p-------~~~~l~~ia~~l---~v~~~~l~~~~--------------~----- 76 (126)
T 3ivp_A 26 LTREQVGAMIEIDPRYLTNIENKGQHP-------SLQVLYDLVSLL---NVSVDEFFLPA--------------S----- 76 (126)
T ss_dssp CCHHHHHHHHTCCHHHHHHHHHSCCCC-------CHHHHHHHHHHH---TCCSHHHHSCC--------------C-----
T ss_pred CCHHHHHHHhCcCHHHHHHHHCCCCCC-------CHHHHHHHHHHH---CcCHHHHhCCC--------------c-----
Confidence 588999999999999998888765321 123455556555 45666655311 0
Q ss_pred cCCCCCchHHHHHHHHHHHHHHHHhhCCHHHHHHHHH
Q 011992 383 NTGVEIPDISVQKQLMRQHVRNLLTLLNPKERCIVRL 419 (473)
Q Consensus 383 T~~~~~pee~le~~el~e~L~~aL~~LperER~VL~L 419 (473)
.... ......+...+..|++.++..+.-
T Consensus 77 --~~~~-------~~~~~~l~~~~~~l~~~~~~~i~~ 104 (126)
T 3ivp_A 77 --SQVK-------STKRRQLENKIDNFTDADLVIMES 104 (126)
T ss_dssp --CCCC-------CHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred --cccc-------hHHHHHHHHHHHcCCHHHHHHHHH
Confidence 0001 112345666778888888877643
No 467
>2iai_A Putative transcriptional regulator SCO3833; structural genomics, TETR, unknow function, PSI-2, protein structure initiative; 1.65A {Streptomyces coelicolor}
Probab=44.75 E-value=35 Score=30.47 Aligned_cols=55 Identities=13% Similarity=0.136 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHH
Q 011992 288 LEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVV 342 (473)
Q Consensus 288 le~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~ 342 (473)
|-.+-.+|..+.|= ..|..+||+.+|++...+.......+..+..++..+...+.
T Consensus 35 Il~aA~~lf~~~G~~~~t~~~IA~~Agvs~~t~Y~~F~sKe~Ll~~~~~~~~~~~~ 90 (230)
T 2iai_A 35 LLSVAVQVFIERGYDGTSMEHLSKAAGISKSSIYHHVTGKEELLRRAVSRALDELF 90 (230)
T ss_dssp HHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHTTTCSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCccccCHHHHHHHHCCChhHHHHhCCCHHHHHHHHHHHHHHHHH
Confidence 44455566667774 58999999999999998887776655555555555544443
No 468
>2m0c_A Homeobox protein aristaless-like 4; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=44.67 E-value=28 Score=26.43 Aligned_cols=51 Identities=8% Similarity=-0.013 Sum_probs=36.2
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..
T Consensus 16 ft~~q~~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~ 67 (75)
T 2m0c_A 16 FTSYQLEELEKVFQKTHYPDVYAREQLAMRTDLTEARVQVWFQNRRAKWRKR 67 (75)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHhCCCHHHHHHHhHHHHHHHHHH
Confidence 455666666666642221 233467889999999999999999888877653
No 469
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=44.56 E-value=18 Score=33.22 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.7
Q ss_pred CCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 425 DGKPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 425 ~ge~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.|+.++-.++|+.||||+..||. |+++|..
T Consensus 36 pG~~L~E~~La~~lgVSRtpVRE----Al~~L~~ 65 (222)
T 3ihu_A 36 PGQRLVETDLVAHFGVGRNSVRE----ALQRLAA 65 (222)
T ss_dssp TTCEECHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred CCCccCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 46889999999999999999998 6766654
No 470
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=44.54 E-value=28 Score=31.47 Aligned_cols=26 Identities=8% Similarity=0.115 Sum_probs=21.0
Q ss_pred hCCCCCHHHHHHHcC--CCHHHHHHHHh
Q 011992 299 FGREPTLIEWAKAIG--LSCRDLKSELH 324 (473)
Q Consensus 299 lGRePT~eEiA~~lG--ms~eeL~~~l~ 324 (473)
-|.+.+.+++|+.++ ++..++..++.
T Consensus 19 ~~~pvs~~~La~~~~~~~~~~~v~~~l~ 46 (162)
T 1t6s_A 19 SEEPVNLQTLSQITAHKFTPSELQEAVD 46 (162)
T ss_dssp CSSCBCHHHHHHHTTCCCCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHhCcCCCHHHHHHHHH
Confidence 488899999999999 88877765543
No 471
>2w53_A Repressor, SMet; antibiotic resistance, multi-drug efflux pump, transcription regulation, transcriptional repressor, DNA binding; 2.00A {Stenotrophomonas maltophilia} PDB: 3p9t_A*
Probab=44.48 E-value=1.3e+02 Score=26.09 Aligned_cols=61 Identities=7% Similarity=0.018 Sum_probs=44.6
Q ss_pred HHHHHHHHHHHHhC-CCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFG-REPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQ 347 (473)
Q Consensus 287 kle~a~~~L~~~lG-RePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~r 347 (473)
+|-.+-.+|..+.| ..-|..+||+..|++...+.....+.+.-+..++..+...+......
T Consensus 15 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvskgtlY~~F~sKe~L~~av~~~~~~~~~~~~~~ 76 (219)
T 2w53_A 15 GILDAAEACFHEHGVARTTLEMIGARAGYTRGAVYWHFKNKSEVLAAIVERVHLPFMQELER 76 (219)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTSCHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccCCHHHHHHHhCCCchHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 35556666777778 45889999999999999998888776677777777766555444443
No 472
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=44.36 E-value=17 Score=32.37 Aligned_cols=28 Identities=18% Similarity=0.242 Sum_probs=22.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
-..|.++||..+|+|+++|+. ++++|++
T Consensus 177 ~~~t~~~lA~~lg~sr~tvsR----~l~~l~~ 204 (227)
T 3dkw_A 177 IPVAKQLVAGHLSIQPETFSR----IMHRLGD 204 (227)
T ss_dssp CCSCTHHHHHHTTSCHHHHHH----HHHHHHH
T ss_pred ecCCHHHHHHHhCCCHHHHHH----HHHHHHH
Confidence 467999999999999999987 4555654
No 473
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=44.23 E-value=26 Score=35.12 Aligned_cols=42 Identities=29% Similarity=0.290 Sum_probs=34.2
Q ss_pred CCHHHHHHHHH--HhhccCCCCCCHHHHHHHH--CCCHHHHHHHHH
Q 011992 409 LNPKERCIVRL--RFGIEDGKPKSLSEVGNIF--GLSKERVRQLES 450 (473)
Q Consensus 409 LperER~VL~L--rY~L~~ge~lTlkEIAe~L--GIS~~rVrqi~~ 450 (473)
|++|++.|+.. ..++..++..+.+++++.+ |||..|||.-+.
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~pV~s~~La~~~~l~VS~aTIRrDL~ 60 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKPVSSQRVLEVSNIEFSSATIRNDMK 60 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSCBCHHHHHHHSCCCSCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccHHHHHHHhCCCCCHHHHHHHHH
Confidence 88999999873 2224456899999999999 999999998654
No 474
>2o7t_A Transcriptional regulator; transcription regulator, DNA/RNA-binding 3-helical bundle FO turn helix motif, HTH motif; HET: UNL; 2.10A {Corynebacterium glutamicum} SCOP: a.4.1.9 a.121.1.1
Probab=44.16 E-value=1.1e+02 Score=26.05 Aligned_cols=59 Identities=10% Similarity=0.102 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVA 345 (473)
Q Consensus 287 kle~a~~~L~~~lGRe-PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA 345 (473)
+|-.+-.++..+.|=. -|..+||+..|++...+.......+.-+..++..+...+....
T Consensus 12 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~~~~~~~~~~~~~~~ 71 (199)
T 2o7t_A 12 HIITTTCNLYRTHHHDSLTMENIAEQAGVGVATLYRNFPDRFTLDMACAQYLFNVVISLQ 71 (199)
T ss_dssp HHHHHHHHHHHHSCGGGCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCccCCHHHHHHHhCCCHHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 4566666777777754 6999999999999999998887766666666666655444433
No 475
>2dg8_A Putative TETR-family transcriptional regulatory P; helix-turn-helix motif, gene regulation; 2.21A {Streptomyces coelicolor}
Probab=44.06 E-value=1.3e+02 Score=25.71 Aligned_cols=73 Identities=11% Similarity=0.053 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHh
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLL 359 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLi 359 (473)
+|-.+-.+|..+.|= ..|..+||+..|++...+.......+.-+..++..+...+............+..+.+
T Consensus 13 ~Il~aa~~l~~~~G~~~~ti~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 86 (193)
T 2dg8_A 13 RILAATLDLIAEEGIARVSHRRIAQRAGVPLGSMTYHFTGIEQLLREAFGRFTDHIVAVFDEHLGAAADRDEAR 86 (193)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHHTSCTHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred HHHHHHHHHHHHhChhhccHHHHHHHhCCCchhhheeCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCCHHHHH
Confidence 455666667777775 5889999999999999998888776666666666665544443333333333444433
No 476
>2nx4_A Transcriptional regulator, TETR family protein; HTH DNA binding motif, structural genomics, PSI-2, Pro structure initiative; 1.70A {Rhodococcus SP}
Probab=43.96 E-value=1.5e+02 Score=25.30 Aligned_cols=57 Identities=9% Similarity=0.025 Sum_probs=43.5
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVH 343 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~s 343 (473)
+|-++-.++..+.|= .-|..+||++.|++...+.....+.+.-+..++..+...+..
T Consensus 14 ~Il~aA~~lf~~~G~~~~s~~~IA~~aGvs~gtlY~yF~sKe~L~~a~~~~~~~~~~~ 71 (194)
T 2nx4_A 14 SITAAAWRLIAARGIEAANMRDIATEAGYTNGALSHYFAGKDEILRTSYEHISEATDR 71 (194)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHHTCCHHHHHHHCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcccCCHHHHHHHhCCCcchHHHhCcCHHHHHHHHHHHHHHHHHH
Confidence 566666777778884 578999999999999999988877766666666666554443
No 477
>3hot_A Transposable element mariner, complete CDS; protein-DNA complex, synaptic complex, transposase, inverted DNA, DNA binding protein-DNA complex; HET: 5IU; 3.25A {Drosophila mauritiana} PDB: 3hos_A*
Probab=43.85 E-value=23 Score=34.18 Aligned_cols=36 Identities=14% Similarity=0.141 Sum_probs=29.9
Q ss_pred HHHHHHHHhhccCCCCCCHHHHHHHHC-------CCHHHHHHHHHHH
Q 011992 413 ERCIVRLRFGIEDGKPKSLSEVGNIFG-------LSKERVRQLESRA 452 (473)
Q Consensus 413 ER~VL~LrY~L~~ge~lTlkEIAe~LG-------IS~~rVrqi~~RA 452 (473)
.|.+|.+.+. .|.+..|||+.|+ +|+.+|..+.++-
T Consensus 11 ~R~~i~~~~~----~G~s~~~~~~~l~~~~g~~~vs~~tv~~w~~r~ 53 (345)
T 3hot_A 11 TRTVLIFCFH----LKKTAAESHRMLVEAFGEQVPTVKTCERWFQRF 53 (345)
T ss_dssp HHHHHHHHHH----TTCCHHHHHHHHHHHTCSCSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH----cCCCHHHHHHHHHHHhCCCCCcHHHHHHHHHHH
Confidence 4556666666 8999999999987 9999999998874
No 478
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=43.71 E-value=17 Score=32.93 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=22.1
Q ss_pred CCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 428 PKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 428 ~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+|.++||..+|+|+++|+. ++++|++
T Consensus 186 ~~t~~~lA~~lG~sr~tvsR----~l~~l~~ 212 (232)
T 1zyb_A 186 KVKMDDLARCLDDTRLNISK----TLNELQD 212 (232)
T ss_dssp ECCHHHHHHHHTSCHHHHHH----HHHHHHH
T ss_pred cCCHHHHHHHhCCChhHHHH----HHHHHHH
Confidence 58999999999999999976 4555553
No 479
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=43.39 E-value=1.1e+02 Score=23.36 Aligned_cols=59 Identities=15% Similarity=0.143 Sum_probs=37.3
Q ss_pred HHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhh
Q 011992 290 KEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQ 360 (473)
Q Consensus 290 ~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQ 360 (473)
.....+....| -|..++|+.+|++...+.++..+.... ....+..+|..+ +++.++++.
T Consensus 20 ~~l~~~R~~~g--lsq~~lA~~~gis~~~is~~e~g~~~~-------~~~~l~~ia~~l---~v~~~~l~~ 78 (92)
T 1lmb_3 20 AIYEKKKNELG--LSQESVADKMGMGQSGVGALFNGINAL-------NAYNAALLAKIL---KVSVEEFSP 78 (92)
T ss_dssp HHHHHHHHHHT--CCHHHHHHHHTSCHHHHHHHHTTSSCC-------CHHHHHHHHHHH---TSCGGGTCH
T ss_pred HHHHHHHHHcC--CCHHHHHHHHCcCHHHHHHHHcCCCCC-------CHHHHHHHHHHH---CCCHHHHhh
Confidence 33344445555 488999999999999998888764321 123355556555 455566554
No 480
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=43.18 E-value=24 Score=33.21 Aligned_cols=29 Identities=41% Similarity=0.496 Sum_probs=24.3
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |..|+|+.+|||+.+|++ |+..|..
T Consensus 31 g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 60 (243)
T 2wv0_A 31 DMPLPSEREYAEQFGISRMTVRQ----ALSNLVN 60 (243)
T ss_dssp TCBCCCHHHHHHHHTCCHHHHHH----HHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 3555 899999999999999988 7777765
No 481
>2dmp_A Zinc fingers and homeoboxes protein 2; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=43.12 E-value=31 Score=27.69 Aligned_cols=51 Identities=12% Similarity=-0.063 Sum_probs=36.1
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|..
T Consensus 20 ~t~~Ql~~Le~~F~~~~yp~~~~r~~La~~~~l~~~qV~vWFqNRR~k~r~~ 71 (89)
T 2dmp_A 20 KTQGQVKILEDSFLKSSFPTQAELDRLRVETKLSRREIDSWFSERRKLRDSM 71 (89)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHccCCCCCHHHHHHHHHHhCCCHHhccHhhHhHHHHHHHH
Confidence 456666667666652211 223467899999999999999998888777653
No 482
>2ly9_A Zinc fingers and homeoboxes protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=43.10 E-value=22 Score=27.16 Aligned_cols=53 Identities=13% Similarity=0.181 Sum_probs=36.8
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhc
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQSLG 461 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~L~ 461 (473)
.++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|+.-.
T Consensus 13 ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~~WFqNrR~k~kk~~~ 66 (74)
T 2ly9_A 13 KTKEQLAELKVSYLKNQFPHDSEIIRLMKITGLTKGEIKKWFSDTRYNQRNSKS 66 (74)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTTTC
T ss_pred CCHHHHHHHHHHHHHcCCCCHHHHHHHHHHhCcCHHHeeeCChhHhHHHHhhCc
Confidence 455566666666642211 23346788999999999999999988877775433
No 483
>2r5y_A Homeotic protein sex combs reduced; homeodomain; HET: DNA; 2.60A {Drosophila melanogaster} PDB: 2r5z_A*
Probab=42.93 E-value=33 Score=27.22 Aligned_cols=51 Identities=8% Similarity=0.108 Sum_probs=37.3
Q ss_pred hCCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 408 ~LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
.+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|.
T Consensus 34 ~ft~~Ql~~Le~~F~~~~yp~~~~r~~La~~l~l~~~qV~vWFqNRR~k~kk 85 (88)
T 2r5y_A 34 SYTRYQTLELEKEFHFNRYLTRRRRIEIAHALSLTERQIKIWFQNRRMKWKK 85 (88)
T ss_dssp CCCHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHT
T ss_pred CcCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCcCHHHhhHHhHHHHHHhHh
Confidence 4677777788777752211 22245789999999999999999888777764
No 484
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=42.84 E-value=23 Score=33.26 Aligned_cols=29 Identities=21% Similarity=0.315 Sum_probs=23.2
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ |-.|+|+.+|||+.+|++ |+..|..
T Consensus 30 g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 59 (236)
T 3edp_A 30 GMLMPNETALQEIYSSSRTTIRR----AVDLLVE 59 (236)
T ss_dssp CC--CCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred cCCCcCHHHHHHHHCcCHHHHHH----HHHHHHH
Confidence 4566 999999999999999998 7777765
No 485
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=42.79 E-value=16 Score=34.77 Aligned_cols=38 Identities=21% Similarity=0.272 Sum_probs=27.4
Q ss_pred HHHHHHHhhccCCCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 414 RCIVRLRFGIEDGKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 414 R~VL~LrY~L~~ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
|-+-.|.++-..+.++|+.|||+.+|+++++|..++..
T Consensus 7 Ral~IL~~l~~~~~~lsl~eia~~lgl~ksT~~RlL~t 44 (260)
T 3r4k_A 7 KALTLLTYFNHGRLEIGLSDLTRLSGMNKATVYRLMSE 44 (260)
T ss_dssp HHHHHHTTCBTTBSEEEHHHHHHHHCSCHHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 33334444323346899999999999999999887654
No 486
>2zcm_A Biofilm operon icaabcd HTH-type negative transcri regulator ICAR; helix-turn-helix, TETR family, repressor; 1.33A {Staphylococcus epidermidis} PDB: 2zcn_A
Probab=42.34 E-value=84 Score=26.72 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHhCC-CCCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHH
Q 011992 287 RLEKEKSKLQSQFGR-EPTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLV 341 (473)
Q Consensus 287 kle~a~~~L~~~lGR-ePT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV 341 (473)
+|-.+-.++..+.|= .-|..+||+.+|++...+.......+.-+..++..+...+
T Consensus 11 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~tlY~~F~sK~~L~~av~~~~~~~~ 66 (192)
T 2zcm_A 11 KIIDNAITLFSEKGYDGTTLDDISKSVNIKKASLYYHYDNKEEIYRKSVENCFNYF 66 (192)
T ss_dssp HHHHHHHHHHHHHCTTTCCHHHHHHHTTCCHHHHHHHTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcccCCHHHHHHHhCCChHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 455566667777784 5889999999999999999888766665555655554443
No 487
>1u8b_A ADA polyprotein; protein-DNA complex, methylation, zinc, helix-turn-helix, metal binding protein/DNA complex; 2.10A {Escherichia coli} PDB: 1zgw_A* 1wpk_A* 1adn_A 1eyf_A
Probab=42.33 E-value=49 Score=27.67 Aligned_cols=26 Identities=15% Similarity=0.259 Sum_probs=22.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
++.++.+||+.+|+|....+.+.++.
T Consensus 92 ~~~sl~~lA~~~g~S~~~f~r~Fk~~ 117 (133)
T 1u8b_A 92 TPVTLEALADQVAMSPFHLHRLFKAT 117 (133)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 78999999999999988888776653
No 488
>2k9q_A Uncharacterized protein; all helix, helix-turn-helix, plasmid, structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=42.32 E-value=1e+02 Score=22.80 Aligned_cols=49 Identities=18% Similarity=0.222 Sum_probs=33.4
Q ss_pred CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcCCcchhhHhhh
Q 011992 303 PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGRGISLHDLLQE 361 (473)
Q Consensus 303 PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~~~saEDLiQE 361 (473)
-|..++|+.+|++...|.++..+.... ....+.++|..+ +++.++++.+
T Consensus 16 lsq~~lA~~~gis~~~i~~~e~g~~~p-------~~~~l~~ia~~l---~v~~~~l~~~ 64 (77)
T 2k9q_A 16 LTAKSVAEEMGISRQQLCNIEQSETAP-------VVVKYIAFLRSK---GVDLNALFDR 64 (77)
T ss_dssp CCHHHHHHHHTSCHHHHHHHHTCCSCC-------HHHHHHHHHHHT---TCCHHHHHHH
T ss_pred CCHHHHHHHhCCCHHHHHHHHcCCCCC-------CHHHHHHHHHHh---CcCHHHHhCc
Confidence 578999999999999998887765421 123345556554 5667776643
No 489
>2fjr_A Repressor protein CI; genetic switch, regulation, cooperativity, transcription regulator; 1.95A {Enterobacteria phage 186} PDB: 2fkd_A
Probab=42.16 E-value=23 Score=31.35 Aligned_cols=22 Identities=14% Similarity=0.253 Sum_probs=20.9
Q ss_pred CHHHHHHHHCCCHHHHHHHHHH
Q 011992 430 SLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 430 TlkEIAe~LGIS~~rVrqi~~R 451 (473)
|.+|+|+.+|+|.++|+++++.
T Consensus 22 tq~elA~~~Gis~~~i~~~e~g 43 (189)
T 2fjr_A 22 QKIQLANHFDIASSSLSNRYTR 43 (189)
T ss_dssp SHHHHHHHTTCCHHHHHHHHHS
T ss_pred CHHHHHHHhCcCHHHHHHHHhC
Confidence 9999999999999999999875
No 490
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=42.15 E-value=24 Score=33.10 Aligned_cols=29 Identities=28% Similarity=0.340 Sum_probs=24.5
Q ss_pred CCCC-CHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 426 GKPK-SLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 426 ge~l-TlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
|+.+ +..|+|+.+|||+.+|++ |+..|..
T Consensus 26 g~~lPse~~La~~~~vSr~tvr~----Al~~L~~ 55 (239)
T 3bwg_A 26 GDKLPVLETLMAQFEVSKSTITK----SLELLEQ 55 (239)
T ss_dssp TCBCCCHHHHHHHTTCCHHHHHH----HHHHHHH
T ss_pred CCCCcCHHHHHHHHCCCHHHHHH----HHHHHHH
Confidence 4666 899999999999999988 7777765
No 491
>1mnm_C Protein (MAT alpha-2 transcriptional repressor); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: a.4.1.1
Probab=42.05 E-value=31 Score=27.27 Aligned_cols=50 Identities=16% Similarity=0.123 Sum_probs=35.1
Q ss_pred hCCHHHHHHHHHHhhc---cCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 011992 408 LLNPKERCIVRLRFGI---EDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLK 457 (473)
Q Consensus 408 ~LperER~VL~LrY~L---~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR 457 (473)
.+++.+..+|...|.- ... ......+||..+|+++..|..+....+.|.|
T Consensus 33 ~ft~~q~~~Le~~f~~~~~~~yP~~~~r~~La~~~gL~~~qV~~WFqNrR~r~k 86 (87)
T 1mnm_C 33 RFTKENVRILESWFAKNIENPYLDTKGLENLMKNTSLSRIQIKNWVSNRRRKEK 86 (87)
T ss_dssp CCCHHHHHHHHHHHHHTTSSCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHhCCCCCcCHHHHHHHHHHHCcCHHHHHHHHHHHHhhcc
Confidence 3667777777776652 110 1223567899999999999999988777654
No 492
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=41.92 E-value=24 Score=29.12 Aligned_cols=25 Identities=8% Similarity=0.191 Sum_probs=20.9
Q ss_pred CCCC--HHHHHHHH-CCCHHHHHHHHHH
Q 011992 427 KPKS--LSEVGNIF-GLSKERVRQLESR 451 (473)
Q Consensus 427 e~lT--lkEIAe~L-GIS~~rVrqi~~R 451 (473)
.+.+ +.||++.+ |||..++++++++
T Consensus 39 g~~~~~~~eL~~~l~gis~~~ls~~L~~ 66 (111)
T 3df8_A 39 GSTRQNFNDIRSSIPGISSTILSRRIKD 66 (111)
T ss_dssp SSSCBCHHHHHHTSTTCCHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHccCCCHHHHHHHHHH
Confidence 3556 99999999 9999999886554
No 493
>2da5_A Zinc fingers and homeoboxes protein 3; homeobox domain, three helices with the DNA binding helix- turn-helix motif, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=41.86 E-value=29 Score=26.81 Aligned_cols=51 Identities=8% Similarity=0.084 Sum_probs=36.0
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQS 459 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~~ 459 (473)
.++.+..+|...|..+.. ......+||..+|+++..|..+...-..+.|..
T Consensus 14 ~t~~Ql~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk~ 65 (75)
T 2da5_A 14 RAPEQLRALESSFAQNPLPLDEELDRLRSETKMTRREIDSWFSERRKKVNAE 65 (75)
T ss_dssp CCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHCCCHHHHHHHHHHHTTHHHHS
T ss_pred CCHHHHHHHHHHHhccCCCCHHHHHHHHHHhCCCHHHhhHhhHHHHHHHHHh
Confidence 455666666666653221 223456889999999999999998877777764
No 494
>1bl0_A Protein (multiple antibiotic resistance protein), DNA (5'- D(*CP*CP*GP*AP*TP*GP*CP*CP*AP*CP*GP*TP*TP*TP*TP*GP*CP*TP*AP *AP*AP*TP* CP*C)-3')...; transcriptional activator; HET: DNA; 2.30A {Escherichia coli} SCOP: a.4.1.8 a.4.1.8 PDB: 1xs9_A
Probab=41.58 E-value=26 Score=29.35 Aligned_cols=26 Identities=27% Similarity=0.354 Sum_probs=23.9
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
++.++.+||+.+|+|+.++..+.++.
T Consensus 26 ~~~sl~~lA~~~~~S~~~l~r~fk~~ 51 (129)
T 1bl0_A 26 SPLSLEKVSERSGYSKWHLQRMFKKE 51 (129)
T ss_dssp SCCCCHHHHHHSSSCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHCcCHHHHHHHHHHH
Confidence 67999999999999999999888775
No 495
>2jrt_A Uncharacterized protein; solution, structure, NESG, PSI, target RHR5, structural genomics, protein structure initiative; NMR {Rhodobacter sphaeroides}
Probab=41.46 E-value=45 Score=27.35 Aligned_cols=26 Identities=19% Similarity=0.109 Sum_probs=23.5
Q ss_pred CCCCHHHHHHHHCCCHHHHHHHHHHH
Q 011992 427 KPKSLSEVGNIFGLSKERVRQLESRA 452 (473)
Q Consensus 427 e~lTlkEIAe~LGIS~~rVrqi~~RA 452 (473)
.+.|+.|+|+.+|||.+.|..+...-
T Consensus 48 g~~s~~e~arry~Is~s~i~~W~r~~ 73 (95)
T 2jrt_A 48 GLITEREALDRYSLSEEEFALWRSAV 73 (95)
T ss_dssp TSSCHHHHHHHTTCCHHHHHHHHHHT
T ss_pred CCCCHHHHHHHhCCCHHHHHHHHHHH
Confidence 57899999999999999999988764
No 496
>2cra_A Homeobox protein HOX-B13; DNA-binding, transcription regulation, helix-turn-helix, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.4.1.1
Probab=41.45 E-value=21 Score=27.03 Aligned_cols=50 Identities=6% Similarity=0.013 Sum_probs=35.1
Q ss_pred CCHHHHHHHHHHhhccCC-CCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q 011992 409 LNPKERCIVRLRFGIEDG-KPKSLSEVGNIFGLSKERVRQLESRALYRLKQ 458 (473)
Q Consensus 409 LperER~VL~LrY~L~~g-e~lTlkEIAe~LGIS~~rVrqi~~RAL~KLR~ 458 (473)
+++.+..+|...|..+.. ......+||..+|+++..|..+...-..|.|.
T Consensus 14 ft~~Q~~~Le~~F~~~~yp~~~~r~~LA~~l~l~~~qV~~WFqNRR~k~kk 64 (70)
T 2cra_A 14 YSKGQLRELEREYAANKFITKDKRRKISAATSLSERQITIWFQNRRVKEKK 64 (70)
T ss_dssp SCHHHHHHHHHHHHHCSSCCHHHHHHHHHHTCCCHHHHHHHHHHHHHTTTS
T ss_pred CCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHCCCHHHhhHhhHhHHHHhcc
Confidence 456666777766653221 22345789999999999999998877766554
No 497
>3gbg_A TCP pilus virulence regulatory protein; cupin, helix-turn-helix, ARAC family, activator, DNA-binding transcription, transcription regulation; HET: PAM; 1.90A {Vibrio cholerae}
Probab=41.42 E-value=1e+02 Score=28.59 Aligned_cols=38 Identities=24% Similarity=0.192 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHhCCCCCHHHHHHHcCCCHHHHHHHHhh
Q 011992 288 LEKEKSKLQSQFGREPTLIEWAKAIGLSCRDLKSELHS 325 (473)
Q Consensus 288 le~a~~~L~~~lGRePT~eEiA~~lGms~eeL~~~l~~ 325 (473)
++++..-+.+.+....+.+++|+.+|++...+.+..+.
T Consensus 171 ~~~~~~~i~~~~~~~~sl~~lA~~~~~S~~~l~r~fk~ 208 (276)
T 3gbg_A 171 MEKISCLVKSDITRNWRWADICGELRTNRMILKKELES 208 (276)
T ss_dssp HHHHHHHHHHTTTSCCCHHHHHHHHTCCHHHHHHHHHT
T ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 44455566777888999999999999999999998875
No 498
>3on2_A Probable transcriptional regulator; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG; HET: MSE PG6; 1.96A {Rhodococcus jostii}
Probab=41.30 E-value=42 Score=28.42 Aligned_cols=76 Identities=9% Similarity=0.040 Sum_probs=41.8
Q ss_pred HHHHHHHHHHHHhCCC-CCHHHHHHHcCCCHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhhcC-CcchhhHhhhh
Q 011992 287 RLEKEKSKLQSQFGRE-PTLIEWAKAIGLSCRDLKSELHSGNSSREKLINANLRLVVHVAKQYQGR-GISLHDLLQEG 362 (473)
Q Consensus 287 kle~a~~~L~~~lGRe-PT~eEiA~~lGms~eeL~~~l~~g~~A~e~Li~~yl~lV~sIA~ry~~~-~~saEDLiQEg 362 (473)
+|-.+-.++..+.|=. .|..+||+..|++...+.......+.-+..++..+...+.......... ..+..+.+...
T Consensus 16 ~Il~aA~~lf~~~G~~~~t~~~IA~~agvs~~t~Y~~F~sK~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 93 (199)
T 3on2_A 16 VLLARAESTLEKDGVDGLSLRQLAREAGVSHAAPSKHFRDRQALLDALAESGFLRLTAALERAVEEAESHARARFAAL 93 (199)
T ss_dssp HHHHHHHHHHHHHCGGGCCHHHHHHHTC-----CCCSSSSHHHHHHHHHHHHHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred HHHHHHHHHHHhcChhhhhHHHHHHHhCCChHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 4555566666777765 7999999999998877766665555555555555554444444333322 33444444333
No 499
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=41.17 E-value=7.4 Score=32.17 Aligned_cols=48 Identities=15% Similarity=0.122 Sum_probs=34.3
Q ss_pred HHHHhhCCHHHHHHHHHHhhccCCCCCCHHHHHHHHC----CCHHHHHHHHHHHH
Q 011992 403 RNLLTLLNPKERCIVRLRFGIEDGKPKSLSEVGNIFG----LSKERVRQLESRAL 453 (473)
Q Consensus 403 ~~aL~~LperER~VL~LrY~L~~ge~lTlkEIAe~LG----IS~~rVrqi~~RAL 453 (473)
.+....|++.|..|+..-+. .++.|..||++.++ ++.++|..++.+-.
T Consensus 27 ~~~~~~LT~~e~~VL~~L~~---~~~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe 78 (99)
T 2k4b_A 27 NEVEFNVSNAELIVMRVIWS---LGEARVDEIYAQIPQELEWSLATVKTLLGRLV 78 (99)
T ss_dssp ----CCCCCSCSHHHHHHHH---HSCEEHHHHHHTCCGGGCCCHHHHHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHh---CCCCCHHHHHHHHhcccCCCHhhHHHHHHHHH
Confidence 44445699999888876654 25799999999997 57899988666543
No 500
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=41.17 E-value=14 Score=35.54 Aligned_cols=26 Identities=15% Similarity=0.194 Sum_probs=20.6
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHH
Q 011992 426 GKPKSLSEVGNIFGLSKERVRQLESR 451 (473)
Q Consensus 426 ge~lTlkEIAe~LGIS~~rVrqi~~R 451 (473)
+.++|+.|||+.+|+++++|..++..
T Consensus 43 ~~~ltl~eia~~lgl~ksTv~RlL~t 68 (275)
T 3mq0_A 43 PRDLTAAELTRFLDLPKSSAHGLLAV 68 (275)
T ss_dssp SSCEEHHHHHHHHTCC--CHHHHHHH
T ss_pred CCCCCHHHHHHHHCcCHHHHHHHHHH
Confidence 36799999999999999999886653
Done!