BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011993
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2VNC|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VNC|B Chain B, Crystal Structure Of Glycogen Debranching Enzyme Trex From
Sulfolobus Solfataricus
pdb|2VR5|A Chain A, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VR5|B Chain B, Crystal Structure Of Trex From Sulfolobus Solfataricus In
Complex With Acarbose Intermediate And Glucose
pdb|2VUY|A Chain A, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
pdb|2VUY|B Chain B, Crystal Structure Of Glycogen Debranching Exzyme Trex From
Sulfolobus Solfatarius
Length = 718
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 198/475 (41%), Positives = 273/475 (57%), Gaps = 48/475 (10%)
Query: 13 MVNTWGYSTINFFSPMSRYAAGG--GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70
+ N WGY INFFSP RY++ G GG + + FK+MV LH AGIEVI+DVVYNHT E
Sbjct: 238 LTNYWGYDPINFFSPECRYSSTGCLGGQVLS---FKKMVNELHNAGIEVIIDVVYNHTAE 294
Query: 71 ADDANPYTTSFRGIDNKVYYMV--DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 128
+ P T SFRGIDN YYM+ D L++ G GNTLN +HP V++++LDSLR+WV
Sbjct: 295 GNHLGP-TLSFRGIDNTAYYMLQPDNKRYYLDFTGTGNTLNLSHPRVIQMVLDSLRYWVT 353
Query: 129 EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC-RGLYLVGK 187
E HVDGFRFDLA+ L R + I A+ +D ILS+ K+IAEPWD +G Y VG
Sbjct: 354 EMHVDGFRFDLAAALARELYSVNMLNTFFI-ALQQDPILSQVKLIAEPWDVGQGGYQVGN 412
Query: 188 FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAH 247
FP +WAEWNGKYRD +R+F +G+ +A R+ GS D+Y N + P+ SIN++ +H
Sbjct: 413 FPY--QWAEWNGKYRDSIRRFWRGEALPYSEIANRLLGSPDIYLGNNKTPFASINYVTSH 470
Query: 248 DGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLA 307
DGFTL DLVSYN KH +SWNCG EG T+D ++ R +Q +NF +
Sbjct: 471 DGFTLEDLVSYNQKHNEANGFNNQDGMNENYSWNCGAEGPTNDQNVVICREKQKRNFMIT 530
Query: 308 LMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQ 367
L+VSQGTPM+L GDE T+ GNNN++ D I F W L+ +K+ F ++I+F +
Sbjct: 531 LLVSQGTPMILGGDELSRTQRGNNNAFCQDNEITWFDW-NLDERKSKFLEFVKKMIQFYR 589
Query: 368 SRRVFGREDFLN--------INDVTWH--------EDNWDNYDSKFLAFTLHDNNGADI- 410
+ F RE + + DVT++ E W + ++ + F L + +I
Sbjct: 590 AHPAFRRERYFQGKKLFGMPLKDVTFYTLEGREVDEKTWSS-PTQLVIFVLEGSVMDEIN 648
Query: 411 -----------YLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLES--PDDIVPEG 452
+ NA+ VKV PK +W V+ + L P++ + EG
Sbjct: 649 MYGERIADDSFLIILNANPNNVKVKF----PKGKWELVISSYLREIKPEERIIEG 699
>pdb|2WSK|A Chain A, Crystal Structure Of Glycogen Debranching Enzyme Glgx From
Escherichia Coli K-12
Length = 657
Score = 248 bits (634), Expect = 4e-66, Method: Compositional matrix adjust.
Identities = 147/362 (40%), Positives = 197/362 (54%), Gaps = 12/362 (3%)
Query: 7 RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 66
R R + N WGY+ + F+ YA P A EF++ +KALH AGIEVILD+V N
Sbjct: 209 RLQRMGLSNYWGYNPVAMFALHPAYACS---PETALDEFRDAIKALHKAGIEVILDIVLN 265
Query: 67 HTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 126
H+ E D P S RGIDN+ YY + G N+ GCGNTLN +HP V++ LR+W
Sbjct: 266 HSAELDLDGPLF-SLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDYASACLRYW 324
Query: 127 VVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD-CRGLYLV 185
V HVDGFRFDLA+V+ R + PL AI +LS+ K+IAEPWD G Y V
Sbjct: 325 VETCHVDGFRFDLAAVMGRTPEFR--QDAPLFTAIQNCPVLSQVKLIAEPWDIAPGGYQV 382
Query: 186 GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFII 245
G FP +AEWN +RD R+F G A R + SSD+++ N R P +IN +
Sbjct: 383 GNFP--PLFAEWNDHFRDAARRFWLHYDLPLGAFAGRFAASSDVFKRNGRLPSAAINLVT 440
Query: 246 AHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQMKNFH 305
AHDGFTL D V +N+KH +S N G EG + R +
Sbjct: 441 AHDGFTLRDCVCFNHKHNEANGEENRDGTNNNYSNNHGKEGLGGSLDLVERRRDSIHALL 500
Query: 306 LALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKF 365
L++SQGTPM+L GDE+GH+++GNNN+Y D + W Q + + F + +I
Sbjct: 501 TTLLLSQGTPMLLAGDEHGHSQHGNNNAYCQDNQLTWLDWSQASSGLTA---FTAALIHL 557
Query: 366 RQ 367
R+
Sbjct: 558 RK 559
>pdb|1BF2|A Chain A, Structure Of Pseudomonas Isoamylase
Length = 750
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 176/521 (33%), Positives = 247/521 (47%), Gaps = 70/521 (13%)
Query: 11 DHMVNTWGYSTINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT 68
D N WGY T N+FSP RYA GGP EF+ MV+A H AGI+V +DVVYNHT
Sbjct: 242 DANQNYWGYMTENYFSPDRRYAYNKAAGGPTA---EFQAMVQAFHNAGIKVYMDVVYNHT 298
Query: 69 NEA---DDANPYTT---SFRGIDNKVYY-MVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121
E ++P T S+RG+DN YY + G + G G N + V LI+D
Sbjct: 299 AEGGTWTSSDPTTATIYSWRGLDNATYYELTSGNQYFYDNTGIGANFNTYNTVAQNLIVD 358
Query: 122 SLRHWVVEYHVDGFRFDLASVLCRGT-----DGSPLNAP-------PLIRAIAKDAIL-- 167
SL +W VDGFRFDLASVL S N P +A + IL
Sbjct: 359 SLAYWANTMGVDGFRFDLASVLGNSCLNGAYTASAPNCPNGGYNFDAADSNVAINRILRE 418
Query: 168 ---------SRCKIIAEPWDCRG-LYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG 217
S + AEPW G Y +G FP W+EWNG +RD LR+ + + G
Sbjct: 419 FTVRPAAGGSGLDLFAEPWAIGGNSYQLGGFP--QGWSEWNGLFRDSLRQ-AQNELGSMT 475
Query: 218 ILATR----ISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXX--XXXXX 271
I T+ SGSS+L++ + R P++SINFI HDG TL D+ S N +
Sbjct: 476 IYVTQDANDFSGSSNLFQSSGRSPWNSINFIDVHDGMTLKDVYSCNGANNSQAWPYGPSD 535
Query: 272 XXXXXXFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN 331
+SW+ G T A + +R F M+S GTP+M GDEY T NN
Sbjct: 536 GGTSTNYSWDQGMSAGTGAAVDQRRAARTGMAFE---MLSAGTPLMQGGDEYLRTLQCNN 592
Query: 332 NSYGHDTAIN--NFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDN 389
N+Y D++ N + W T +++ Y F +I FR++ + + + +TW++ +
Sbjct: 593 NAYNLDSSANWLTYSW---TTDQSNFYTFAQRLIAFRKAHPALRPSSWYSGSQLTWYQPS 649
Query: 390 --------WDNYDSKFLAFTLHDNNGAD---IYLAFNAHDFFVKVSLPPPPPKRQWFRVV 438
W+N + +A+ ++ + D IY+A+N V +LP PP QW+RV
Sbjct: 650 GAVADSNYWNNTSNYAIAYAINGPSLGDSNSIYVAYNGWSSSVTFTLPAPPSGTQWYRVT 709
Query: 439 DT---NLESPDDIVPEGA---AGTGSTYNLSPYSSILLEAK 473
DT N + + P G G+TY S +LL +K
Sbjct: 710 DTCDWNDGASTFVAPGSETLIGGAGTTYGQCGQSLLLLISK 750
>pdb|2WAN|A Chain A, Pullulanase From Bacillus Acidopullulyticus
Length = 921
Score = 134 bits (337), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 102/371 (27%), Positives = 156/371 (42%), Gaps = 62/371 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY N+ P YA G + + E K+++++LH I V +DVVYNHT +
Sbjct: 507 WGYDPRNYNVPEGAYATTPEGTARIT-ELKQLIQSLHQQRIGVNMDVVYNHTFDV----- 560
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
+ F I + YY D G N +G GN HP+ + +LDS+ +WV EYHVDGFR
Sbjct: 561 MVSDFDKIVPQYYYRTDSNGNYTNGSGXGNEFATEHPMAQKFVLDSVNYWVNEYHVDGFR 620
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD--CRGLYLVGKFPNWDRW 194
FDL ++L + T N + AI +L EPW GL +
Sbjct: 621 FDLMALLGKDTMAKISNE---LHAINPGIVL-----YGEPWTGGTSGLSSDQLVTKGQQK 672
Query: 195 AEWNGKYRDDLRK-------------FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSI 241
G + D++R F GDP ++ + GS + P +I
Sbjct: 673 GLGIGVFNDNIRNGLDGNVFDKTAQGFATGDPNQVDVIKNGVIGSIQDF---TSAPSETI 729
Query: 242 NFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQM 301
N++ +HD TL+D + ++ + +A R +
Sbjct: 730 NYVTSHDNMTLWDKIL-----------------------------ASNPSDTEADRIKMD 760
Query: 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSE 361
+ H + SQG P M G+E T+ GN+NSY ++N F W + K+ + +FS
Sbjct: 761 ELAHAVVFTSQGVPFMQGGEEMLRTKGGNDNSYNAGDSVNQFDWSRKAQFKDV-FDYFSS 819
Query: 362 VIKFRQSRRVF 372
+I R F
Sbjct: 820 MIHLRNQHPAF 830
>pdb|2E8Y|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Y|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168
pdb|2E8Z|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E8Z|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Alpha-Cyclodextrin
pdb|2E9B|A Chain A, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
pdb|2E9B|B Chain B, Crystal Structure Of Pullulanase Type I From Bacillus
Subtilis Str. 168 Complexed With Maltose
Length = 718
Score = 113 bits (282), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 105/382 (27%), Positives = 160/382 (41%), Gaps = 78/382 (20%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY+ ++FF+P YA+ P E K+M+ LH G+ VILDVV+NH + +++ P
Sbjct: 290 WGYNPLHFFAPEGSYASNPHDPQTRKTELKQMINTLHQHGLRVILDVVFNHVYKRENS-P 348
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
+ + G ++ D G+ N G GN + + + I D + +W+ EY+VDGFR
Sbjct: 349 FEKTVPG----YFFRHDECGKPSNGTGVGNDIASERRMARKFIADCVVYWLEEYNVDGFR 404
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAE 196
FDL +L D + AK IL + E WD L P+ + A
Sbjct: 405 FDLLGIL----DIDTVLYMKEKATKAKPGIL----LFGEGWD-----LATPLPHEQKAAL 451
Query: 197 WN-------GKYRDDLRKFIKGD------------------PGMKGILATRISGSSDLYR 231
N G + D R +KG+ M GI + SG L
Sbjct: 452 ANAPRMPGIGFFNDMFRDAVKGNTFHLKATGFALGNGESAQAVMHGIAGS--SGWKALAP 509
Query: 232 VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDA 291
+ +P SIN++ +HD T +D +S+ E D
Sbjct: 510 IVP-EPSQSINYVESHDNHTFWDKMSF------------------------ALPQENDSR 544
Query: 292 SIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET- 350
RSRQ + L+ +QG P + G E+ T+ G NSY +IN W + ET
Sbjct: 545 K----RSRQRLAVAIILL-AQGVPFIHSGQEFFRTKQGVENSYQSSDSINQLDWDRRETF 599
Query: 351 KKNSHYRFFSEVIKFRQSRRVF 372
K++ HY +I R++ F
Sbjct: 600 KEDVHY--IRRLISLRKAHPAF 619
>pdb|2YA0|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 714
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 137/333 (41%), Gaps = 55/333 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY N+FS Y++ P K EFK ++ +H G+ ILDVVYNHT + D
Sbjct: 229 WGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD---- 284
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
F ++ Y+ +D G G G L H + L++DS+++ V Y VDGFR
Sbjct: 285 ---LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFR 340
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RGLYLVGKFPNWD 192
FD+ + S A RA+ + I+ + E W + +W
Sbjct: 341 FDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDENMPTKAADQDWM 392
Query: 193 RWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR-----------KPYHSI 241
+ + + DD+R +K +G A G D+ + K P I
Sbjct: 393 KHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVI 452
Query: 242 NFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQM 301
+I AHD TL+D+++ + K + A A R++
Sbjct: 453 QYIAAHDNLTLFDIIAQSIKK------------------------DPSKAENYAEIHRRL 488
Query: 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 334
+ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 489 RLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 521
>pdb|2YA1|A Chain A, Product Complex Of A Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua
Length = 1014
Score = 100 bits (249), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 137/333 (41%), Gaps = 55/333 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY N+FS Y++ P K EFK ++ +H G+ ILDVVYNHT + D
Sbjct: 536 WGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD---- 591
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
F ++ Y+ +D G G G L H + L++DS+++ V Y VDGFR
Sbjct: 592 ---LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFR 647
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RGLYLVGKFPNWD 192
FD+ + S A RA+ + I+ + E W + +W
Sbjct: 648 FDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDENMPTKAADQDWM 699
Query: 193 RWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR-----------KPYHSI 241
+ + + DD+R +K +G A G D+ + K P I
Sbjct: 700 KHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVI 759
Query: 242 NFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQM 301
+I AHD TL+D+++ + K + A A R++
Sbjct: 760 QYIAAHDNLTLFDIIAQSIKK------------------------DPSKAENYAEIHRRL 795
Query: 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 334
+ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 796 RLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 828
>pdb|2YA2|A Chain A, Catalytic Module Of The Multi-Modular Glycogen-Degrading
Pneumococcal Virulence Factor Spua In Complex With An
Inhibitor
Length = 708
Score = 100 bits (248), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 86/333 (25%), Positives = 137/333 (41%), Gaps = 55/333 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY N+FS Y++ P K EFK ++ +H G+ ILDVVYNHT + D
Sbjct: 230 WGYDPQNYFSLTGMYSSDPKNPEKRIAEFKNLINEIHKRGMGAILDVVYNHTAKVD---- 285
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
F ++ Y+ +D G G G L H + L++DS+++ V Y VDGFR
Sbjct: 286 ---LFEDLEPNYYHFMDADGTPRTSFGGGR-LGTTHHMTKRLLIDSIKYLVDTYKVDGFR 341
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RGLYLVGKFPNWD 192
FD+ + S A RA+ + I+ + E W + +W
Sbjct: 342 FDM---MGDHDAASIEEAYKAARALNPNLIM-----LGEGWRTYAGDENMPTKAADQDWM 393
Query: 193 RWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR-----------KPYHSI 241
+ + + DD+R +K +G A G D+ + K P I
Sbjct: 394 KHTDTVAVFSDDIRNNLKSGYPNEGQPAFITGGKRDVNTIFKNLIAQPTNFEADSPGDVI 453
Query: 242 NFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQM 301
+I AHD TL+D+++ + K + A A R++
Sbjct: 454 QYIAAHDDLTLFDIIAQSIKK------------------------DPSKAENYAEIHRRL 489
Query: 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSY 334
+ +L ++ +QGTP + G EYG T+ N +Y
Sbjct: 490 RLGNLMVLTAQGTPFIHSGQEYGRTKQFRNPAY 522
>pdb|3FAW|A Chain A, Crystal Structure Of The Group B Streptococcus Pullulanase
Sap
pdb|3FAX|A Chain A, The Crystal Structure Of Gbs Pullulanase Sap In Complex
With Maltotetraose
Length = 877
Score = 82.4 bits (202), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 79/326 (24%), Positives = 131/326 (40%), Gaps = 57/326 (17%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY ++F+ Y+ P E K+++ +H G+ VILDVVYNHT +
Sbjct: 344 WGYDPQSYFALSGMYSEKPKDPSARIAELKQLIHDIHKRGMGVILDVVYNHTAK------ 397
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
T F I+ Y+ ++ G G G L H + +++DS+++ E+ VDGFR
Sbjct: 398 -TYLFEDIEPNYYHFMNEDGSPRESFGGGR-LGTTHAMSRRVLVDSIKYLTSEFKVDGFR 455
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDC----RGLYLVGKFPNWD 192
FD+ G A + AI +I E W +G + +W
Sbjct: 456 FDMM--------GDHDAAAIELAYKEAKAINPNMIMIGEGWRTFQGDQGKPVKPADQDWM 507
Query: 193 RWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR-----------KPYHSI 241
+ + G + DD+R +K +G A G L + K P +
Sbjct: 508 KSTDTVGVFSDDIRNSLKSGFPNEGTPAFITGGPQSLQGIFKNIKAQPGNFEADSPGDVV 567
Query: 242 NFIIAHDGFTLYDLVSYNYKHXXXXXXXXXXXXXXXFSWNCGFEGETDDASIKALRSRQM 301
+I AHD TL+D+++ S N + +D R++
Sbjct: 568 QYIAAHDNLTLHDVIAK--------------------SINKDPKVAEEDI------HRRL 601
Query: 302 KNFHLALMVSQGTPMMLMGDEYGHTR 327
+ ++ ++ SQGT + G EYG T+
Sbjct: 602 RLGNVMILTSQGTAFIHSGQEYGRTK 627
>pdb|2Y4S|A Chain A, Barley Limit Dextrinase In Complex With Beta-Cyclodextrin
pdb|2Y5E|A Chain A, Barley Limit Dextrinase In Complex With Alpha-Cyclodextrin
pdb|4AIO|A Chain A, Crystal Structure Of The Starch Debranching Enzyme Barley
Limit Dextrinase
Length = 884
Score = 80.1 bits (196), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/165 (33%), Positives = 86/165 (52%), Gaps = 9/165 (5%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY+ + + P YA+ GP + E+++MV+AL+ G+ V++DVVYNH + +
Sbjct: 354 WGYNPVLWGVPKGSYASDPDGPSRI-IEYRQMVQALNRIGLRVVMDVVYNHLDSSGPCG- 411
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
++ I Y D GQ+ N A NT + H +V LI+D L +W V Y VDGFR
Sbjct: 412 ISSVLDKIVPGYYVRRDTNGQIENSAAMNNTAS-EHFMVDRLIVDDLLNWAVNYKVDGFR 470
Query: 137 FDLASVLCRGTDGSPLNAPPLIRAIAKDA---ILSRCKIIAEPWD 178
FDL + + T + A ++++ DA S+ + E WD
Sbjct: 471 FDLMGHIMKRT---MMRAKSALQSLTTDAHGVDGSKIYLYGEGWD 512
>pdb|2FHB|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltose
pdb|2FHC|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotriose
pdb|2FHF|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Maltotetraose
Length = 1083
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 6 RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGA 55
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 537 KDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDL 595
Query: 56 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H +
Sbjct: 596 GMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMF 654
Query: 116 MELILDSLRHWVVEYHVDGFRFDL 139
+LI DSL W +Y +DGFRFDL
Sbjct: 655 AKLIADSLAVWTTDYKIDGFRFDL 678
>pdb|2FGZ|A Chain A, Crystal Structure Analysis Of Apo Pullulanase From
Klebsiella Pneumoniae
Length = 926
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 6 RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGA 55
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 380 KDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDL 438
Query: 56 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H +
Sbjct: 439 GMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMF 497
Query: 116 MELILDSLRHWVVEYHVDGFRFDL 139
+LI DSL W +Y +DGFRFDL
Sbjct: 498 AKLIADSLAVWTTDYKIDGFRFDL 521
>pdb|2FH6|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Glucose
Length = 920
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 6 RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGA 55
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 374 KDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDL 432
Query: 56 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H +
Sbjct: 433 GMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMF 491
Query: 116 MELILDSLRHWVVEYHVDGFRFDL 139
+LI DSL W +Y +DGFRFDL
Sbjct: 492 AKLIADSLAVWTTDYKIDGFRFDL 515
>pdb|2FH8|A Chain A, Crystal Structure Analysis Of Klebsiella Pneumoniae
Pullulanase Complexed With Isomaltose
Length = 922
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 48/144 (33%), Positives = 70/144 (48%), Gaps = 12/144 (8%)
Query: 6 RRNPRDHMVNT---------WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKAL-HGA 55
+ NP+ +NT WGY ++ P YA G + EF+ M++A+
Sbjct: 376 KDNPQVQALNTLVAQTDSYNWGYDPFHYTVPEGSYATDPEGTARIK-EFRTMIQAIKQDL 434
Query: 56 GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115
G+ VI+DVVYNHTN A + T+ I Y ++ T + A C + H +
Sbjct: 435 GMNVIMDVVYNHTNAAGPTD-RTSVLDKIVPWYYQRLNETTGSVESATCCSDSAPEHRMF 493
Query: 116 MELILDSLRHWVVEYHVDGFRFDL 139
+LI DSL W +Y +DGFRFDL
Sbjct: 494 AKLIADSLAVWTTDYKIDGFRFDL 517
>pdb|3M07|A Chain A, 1.4 Angstrom Resolution Crystal Structure Of Putative
Alpha Amylase From Salmonella Typhimurium
Length = 618
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 53/122 (43%), Gaps = 21/122 (17%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY + ++P S Y G P +FK + A HG G+ V+LD+V NH
Sbjct: 185 WGYDGVLLYAPHSAY----GTPD----DFKAFIDAAHGYGLSVVLDIVLNH--------- 227
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
F N + + GN + + V I+++ +W+ EYH+DG R
Sbjct: 228 ----FGPEGNYLPLLAPAFFHKERMTPWGNGIAYDVDAVRRYIIEAPLYWLTEYHLDGLR 283
Query: 137 FD 138
FD
Sbjct: 284 FD 285
>pdb|3AMK|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 702
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 28/132 (21%)
Query: 16 TWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH-TNEADDA 74
++GY NFF+ SR G P + K +V H G+ V++DVV++H +N D
Sbjct: 232 SFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDG 283
Query: 75 --------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 126
N + + F D + + D +L NYA V+ +L +LR+W
Sbjct: 284 LNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE---------VLRFLLSNLRYW 332
Query: 127 VVEYHVDGFRFD 138
+ E+ DGFRFD
Sbjct: 333 MDEFMFDGFRFD 344
>pdb|3AML|A Chain A, Structure Of The Starch Branching Enzyme I (Bei) From
Oryza Sativa L
Length = 755
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 28/132 (21%)
Query: 16 TWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH-TNEADDA 74
++GY NFF+ SR G P + K +V H G+ V++DVV++H +N D
Sbjct: 232 SFGYHVTNFFAVSSR----SGTPE----DLKYLVDKAHSLGLRVLMDVVHSHASNNVTDG 283
Query: 75 --------NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 126
N + + F D + + D +L NYA V+ +L +LR+W
Sbjct: 284 LNGYDVGQNTHESYFHTGDRGYHKLWDS--RLFNYANWE---------VLRFLLSNLRYW 332
Query: 127 VVEYHVDGFRFD 138
+ E+ DGFRFD
Sbjct: 333 MDEFMFDGFRFD 344
>pdb|1EHA|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
From Sulfolobus Solfataricus
Length = 558
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY + ++ + Y GGP F+++V H G+ VILDVVYNH +
Sbjct: 150 WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGN--- 198
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
Y ++ Y G N + V + IL+++ +W+ EY+VDGFR
Sbjct: 199 YMVKLGPYFSQKYKTPWGL--------TFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 250
Query: 137 FDLASVLCRGTDGSP 151
D + D SP
Sbjct: 251 LDAVHAII---DTSP 262
>pdb|3VGG|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltoheptaose
pdb|3VGH|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(E283q) Complexed With Maltotriosyltrehalose
Length = 558
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 59/139 (42%), Gaps = 30/139 (21%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEAD 72
WGY + ++ + Y GGP F+++V H G+ VILDVVYNH N
Sbjct: 150 WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMV 201
Query: 73 DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 132
PY + + + D + V + IL+++ +W+ EY+V
Sbjct: 202 KLGPYFSQKYKTPWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNV 246
Query: 133 DGFRFDLASVLCRGTDGSP 151
DGFR D + D SP
Sbjct: 247 DGFRLDAVHAII---DTSP 262
>pdb|1EH9|A Chain A, Crystal Structure Of Sulfolobus Solfataricus
Glycosyltrehalose Trehalohydrolase
pdb|3VGB|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(Gthase) From Sulfolobus Solfataricus Km1
Length = 558
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY + ++ + Y GGP F+++V H G+ VILDVVYNH +
Sbjct: 150 WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMV 201
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
+ K + G N+ + V + IL+++ +W+ EY+VDGFR
Sbjct: 202 KLGPYFSQKYKTPW-----GLTFNFD------DAESDEVRKFILENVEYWIKEYNVDGFR 250
Query: 137 FDLASVLCRGTDGSP 151
D + D SP
Sbjct: 251 LDAVHAII---DTSP 262
>pdb|1EA9|C Chain C, Cyclomaltodextrinase
pdb|1EA9|D Chain D, Cyclomaltodextrinase
Length = 583
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/110 (28%), Positives = 49/110 (44%), Gaps = 15/110 (13%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-----------MVD 93
K++V H GI V+LD V+NH+ P+ + + Y +VD
Sbjct: 221 LKKLVDLCHERGIRVLLDAVFNHSGRT--FPPFVDVLKNGEKSKYKDWFHIRSLPLEVVD 278
Query: 94 G--TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
G T + LN HP V E +L + +W+ E +DG+R D+A+
Sbjct: 279 GIPTYDTFAFEPLMPKLNTEHPDVKEYLLKAAEYWIRETGIDGWRLDVAN 328
>pdb|3K1D|A Chain A, Crystal Structure Of Glycogen Branching Enzyme Synonym:
1,4- Glucan:1,4-Alpha-D-Glucan 6-Glucosyl-Transferase
From Mycob Tuberculosis H37rv
Length = 722
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 17/133 (12%)
Query: 13 MVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD 72
+WGY ++++P SR+ G P +F+ +V ALH AGI VI+D V H +
Sbjct: 291 FAGSWGYQVTSYYAPTSRF----GTPD----DFRALVDALHQAGIGVIVDWVPAHFPKDA 342
Query: 73 DANPYTTSFRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYH 131
A F G +Y D G+ L++ + P V ++ + +W+ E+H
Sbjct: 343 WA---LGRFDG--TPLYEHSDPKRGEQLDWGTY--VFDFGRPEVRNFLVANALYWLQEFH 395
Query: 132 VDGFRFD-LASVL 143
+DG R D +AS+L
Sbjct: 396 IDGLRVDAVASML 408
>pdb|3VGD|A Chain A, Ctystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252e)
Length = 558
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 59/135 (43%), Gaps = 22/135 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY + ++ + Y GGP F+++V H G+ VILDVVYNH +
Sbjct: 150 WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGN--- 198
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
Y ++ Y G N + V + IL+++ +W+ EY+VDGFR
Sbjct: 199 YMVKLGPYFSQKYKTPWGL--------TFNFDDAESDEVRKFILENVEYWIKEYNVDGFR 250
Query: 137 FDLASVLCRGTDGSP 151
+ + D SP
Sbjct: 251 LEAVHAII---DTSP 262
>pdb|3VGE|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s)
pdb|3VGF|A Chain A, Crystal Structure Of Glycosyltrehalose Trehalohydrolase
(D252s) Complexed With Maltotriosyltrehalose
Length = 558
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 58/139 (41%), Gaps = 30/139 (21%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT----NEAD 72
WGY + ++ + Y GGP F+++V H G+ VILDVVYNH N
Sbjct: 150 WGYDGVYLYAVQNSY----GGPEG----FRKLVDEAHKKGLGVILDVVYNHVGPEGNYMV 201
Query: 73 DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 132
PY + + + D + V + IL+++ +W+ EY+V
Sbjct: 202 KLGPYFSQKYKTPWGLTFNFD---------------DAESDEVRKFILENVEYWIKEYNV 246
Query: 133 DGFRFDLASVLCRGTDGSP 151
DGFR + D SP
Sbjct: 247 DGFRLSAVHAII---DTSP 262
>pdb|3DHU|A Chain A, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|B Chain B, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|C Chain C, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
pdb|3DHU|D Chain D, Crystal Structure Of An Alpha-Amylase From Lactobacillus
Plantarum
Length = 449
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 52/103 (50%), Gaps = 13/103 (12%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAG 103
+FK + H G++V+LD+VYNHT+ S ++ ++ D GQL N G
Sbjct: 85 DFKALTDRAHELGMKVMLDIVYNHTS--------PDSVLATEHPEWFYHDADGQLTNKVG 136
Query: 104 CGN---TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143
+ L+ H + + +D+L +W VDG+R D+A ++
Sbjct: 137 DWSDVKDLDYGHHELWQYQIDTLLYW--SQFVDGYRCDVAPLV 177
>pdb|1SMA|A Chain A, Crystal Structure Of A Maltogenic Amylase
pdb|1SMA|B Chain B, Crystal Structure Of A Maltogenic Amylase
Length = 588
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTTSFRGIDNKVYYMVDG 94
K +VK H GI V+LD V+NH + A+ Y F + +
Sbjct: 225 LKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRP 284
Query: 95 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ LN HP V +LD +W+ E+ +DG+R D+A+
Sbjct: 285 NYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|1GVI|A Chain A, Thermus Maltogenic Amylase In Complex With Beta-Cd
pdb|1GVI|B Chain B, Thermus Maltogenic Amylase In Complex With Beta-Cd
Length = 588
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 45/107 (42%), Gaps = 10/107 (9%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTTSFRGIDNKVYYMVDG 94
K +VK H GI V+LD V+NH + A+ Y F + +
Sbjct: 225 LKTLVKRCHEKGIRVMLDAVFNHCGYEFAPFQDVLKNGAASRYKDWFHIREFPLQTEPRP 284
Query: 95 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ LN HP V +LD +W+ E+ +DG+R D+A+
Sbjct: 285 NYDTFAFVPHMPKLNTAHPEVKRYLLDVATYWIREFDIDGWRLDVAN 331
>pdb|1JDA|A Chain A, Maltotetraose-Forming Exo-Amylase
pdb|1JDC|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 1)
pdb|1JDD|A Chain A, Mutant (E219q) Maltotetraose-Forming Exo-Amylase
Cocrystallized With Maltotetraose (Crystal Type 2)
Length = 429
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGQLWKGPSEYPNWD 231
>pdb|2BHY|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Trehalose
pdb|2BHZ|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase In Complex With
Maltose
pdb|2BXY|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BXZ|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY0|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY1|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY2|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
pdb|2BY3|A Chain A, Is Radiation Damage Dependent On The Dose-Rate Used During
Macromolecular Crystallography Data Collection
Length = 602
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/122 (28%), Positives = 51/122 (41%), Gaps = 21/122 (17%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLXALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
Y +S+ Y D + G L+ P + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD-----RFSSAWGXGLDYAEPHXRRYVTGNARXWLRDYHFDGLR 273
Query: 137 FD 138
D
Sbjct: 274 LD 275
>pdb|2BHU|A Chain A, Crystal Structure Of Deinococcus Radiodurans
Maltooligosyltrehalose Trehalohydrolase
Length = 602
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 55/128 (42%), Gaps = 21/128 (16%)
Query: 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
WGY F++P + Y G P + +V A H G+ V LDVVYNH + +
Sbjct: 175 WGYDGAAFYAPYAPY----GRPE----DLMALVDAAHRLGLGVFLDVVYNHFGPSGN--- 223
Query: 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFR 136
Y +S+ Y D + + G G L+ P + + + R W+ +YH DG R
Sbjct: 224 YLSSY-----APSYFTD---RFSSAWGMG--LDYAEPHMRRYVTGNARMWLRDYHFDGLR 273
Query: 137 FDLASVLC 144
D +
Sbjct: 274 LDATPYMT 281
>pdb|2AMG|A Chain A, Structure Of Hydrolase (Glycosidase)
Length = 418
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI5|A Chain A, Mutant (D294n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1GCY|A Chain A, High Resolution Crystal Structure Of Maltotetraose-Forming
Exo-Amylase
Length = 527
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QI4|A Chain A, Mutant (e219g) Maltotetraose-forming Exo-amylase In
Complex With Maltotetraose
Length = 429
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/168 (25%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRFD
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFD-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGGLWKGPSEYPNWD 231
>pdb|1LWH|A Chain A, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWH|B Chain B, Crystal Structure Of T. Maritima
4-Alpha-Glucanotransferase
pdb|1LWJ|A Chain A, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
pdb|1LWJ|B Chain B, Crystal Structure Of T. Maritima 4-Alpha-
GlucanotransferaseACARBOSE COMPLEX
Length = 441
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/146 (26%), Positives = 65/146 (44%), Gaps = 31/146 (21%)
Query: 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHT-------NE 70
GY ++F+S + Y + EFKEM++A H +GI+V+LD+ +HT +
Sbjct: 53 GYDVVDFYSFKAEYGS--------EREFKEMIEAFHDSGIKVVLDLPIHHTGFLHTWFQK 104
Query: 71 ADDANPYTTSFRGIDNKV---------------YYMVDGTGQLLNYAGCGNTLNCNHPVV 115
A +P+ + NK + + DG + LN ++P V
Sbjct: 105 ALKGDPHYRDYYVWANKETDLDERREWDGEKIWHPLEDGRFYRGLFGPFSPDLNYDNPQV 164
Query: 116 MELILDSLRHWVVEYHVDGFRFDLAS 141
+ + + H +++ VDGFRFD A
Sbjct: 165 FDEMKRLVLH-LLDMGVDGFRFDAAK 189
>pdb|1WZA|A Chain A, Crystal Structure Of Alpha-Amylase From H.Orenii
Length = 488
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/118 (27%), Positives = 57/118 (48%), Gaps = 22/118 (18%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-------- 95
+F ++V+A H GI+VI+D+ NHT+E + + + + YY+ G
Sbjct: 83 DFHKLVEAAHQRGIKVIIDLPINHTSERHPWFLKASRDKNSEYRDYYVWAGPDTDTKETK 142
Query: 96 ---GQLLNYAGCG----------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA 140
G++ +Y+ G LN N+P V E ++ ++W+ + VDGFR D A
Sbjct: 143 LDGGRVWHYSPTGMYYGYFWSGMPDLNYNNPEVQEKVIGIAKYWLKQ-GVDGFRLDGA 199
>pdb|1CYG|A Chain A, Cyclodextrin Glucanotransferase (E.C.2.4.1.19) (Cgtase)
Length = 680
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/114 (28%), Positives = 54/114 (47%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDN-----------KVYYM 91
+F+ +V A H GI+VI+D NHT+ A + NP Y + R DN +Y+
Sbjct: 113 DFQRLVDAAHAKGIKVIIDFAPNHTSPASETNPSYMENGRLYDNGTLLGGYTNDANMYFH 172
Query: 92 VDGTGQLLN-----YAGCGNTLNCNH--PVVMELILDSLRHWVVEYHVDGFRFD 138
+G + Y + + NH PV+ + D+++ W ++ +DG R D
Sbjct: 173 HNGGTTFSSLEDGIYRNLFDLADLNHQNPVIDRYLKDAVKMW-IDMGIDGIRMD 225
>pdb|1QI3|A Chain A, Mutant (D193n) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 429
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 60/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRF+
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFN-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|1QPK|A Chain A, Mutant (D193g) Maltotetraose-Forming Exo-Amylase In
Complex With Maltotetraose
Length = 418
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/168 (24%), Positives = 59/168 (35%), Gaps = 49/168 (29%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--- 100
+ ++ AL GAG++V+ DVV NH N RG +K + G G N
Sbjct: 94 QLRQAASALGGAGVKVLYDVVPNHMN------------RGYPDKEINLPAGQGFWRNDCA 141
Query: 101 --------------YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRG 146
+ G LN HP V + D + +Y GFRF
Sbjct: 142 DPGNYPNDCDDGDRFIGGDADLNTGHPQVYGMFRDEFTNLRSQYGAGGFRFG-------- 193
Query: 147 TDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVG--KFPNWD 192
+R A + + S A+ C G G ++PNWD
Sbjct: 194 ----------FVRGYAPERVNSWMTDSADNSFCVGELWKGPSEYPNWD 231
>pdb|2Z1K|A Chain A, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|B Chain B, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|C Chain C, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
pdb|2Z1K|D Chain D, Crystal Structure Of Ttha1563 From Thermus Thermophilus
Hb8
Length = 475
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 47/111 (42%), Gaps = 22/111 (19%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTTSF--RGIDNKVYYMV 92
+ +++ H G+ VILD V+NHT E + +PY + +G K Y
Sbjct: 99 LRHLLEVAHAHGVRVILDGVFNHTGRGFFAFQHLXENGEQSPYRDWYHVKGFPLKAY--- 155
Query: 93 DGTGQLLNYAGCGN----TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 139
T A GN L P V E +L HW + + VDG+R D+
Sbjct: 156 --TAHPNYEAWWGNPELPKLKVETPAVREYLLAVAEHW-IRFGVDGWRLDV 203
>pdb|1J0J|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0J|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Maltotetraose
pdb|1J0K|A Chain A, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
pdb|1J0K|B Chain B, Crystal Structure Of Neopullulanase E357q Complex With
Isopanose
Length = 588
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTTSFRGIDNKVYYMVDG 94
K ++ H GI V+LD V+NH + +++ Y F + +
Sbjct: 225 LKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRP 284
Query: 95 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143
+ LN +P V +LD +W+ E+ +DG+R D+A+ +
Sbjct: 285 NYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEI 333
>pdb|1J0H|A Chain A, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0H|B Chain B, Crystal Structure Of Bacillus Stearothermophilus
Neopullulanase
pdb|1J0I|A Chain A, Crystal Structure Of Neopullulanase Complex With Panose
pdb|1J0I|B Chain B, Crystal Structure Of Neopullulanase Complex With Panose
Length = 588
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 46/109 (42%), Gaps = 10/109 (9%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN----------EADDANPYTTSFRGIDNKVYYMVDG 94
K ++ H GI V+LD V+NH + +++ Y F + +
Sbjct: 225 LKTLIDRCHEKGIRVMLDAVFNHCGYEFAPFQDVWKNGESSKYKDWFHIHEFPLQTEPRP 284
Query: 95 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143
+ LN +P V +LD +W+ E+ +DG+R D+A+ +
Sbjct: 285 NYDTFAFVPQMPKLNTANPEVKRYLLDVATYWIREFDIDGWRLDVANEI 333
>pdb|2WC7|A Chain A, Crystal Structure Of Nostoc Punctiforme Debranching
Enzyme( Npde)(Acarbose Soaked)
pdb|2WCS|A Chain A, Crystal Structure Of Debranching Enzyme From Nostoc
Punctiforme (Npde)
pdb|2WKG|A Chain A, Nostoc Punctiforme Debranching Enzyme (Npde)(Native Form)
Length = 488
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 29/108 (26%), Positives = 55/108 (50%), Gaps = 14/108 (12%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTN-------EADDANPYTTSFRGIDNKVYYMVDGTGQ 97
FKE++ A H I+V+LD V+NH++ + + P++ + + + G+
Sbjct: 105 FKELLDAAHQRNIKVVLDGVFNHSSRGFFFFHDVLENGPHSPWVNWFKIEGWPLSPYNGE 164
Query: 98 L-LNYAG-CGN----TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 139
NY G GN N ++P V E I++ +W +++ +DG+R D+
Sbjct: 165 FPANYVGWAGNRALPEFNHDNPEVREYIMEIAEYW-LKFGIDGWRLDV 211
>pdb|1UA7|A Chain A, Crystal Structure Analysis Of Alpha-Amylase From Bacillus
Subtilis Complexed With Acarbose
Length = 422
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 39 LKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYM---VDGT 95
L EFKEM A GI+VI+D V NHT T + I N+V + G
Sbjct: 71 LGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKSIPNWTHGN 121
Query: 96 GQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 145
Q+ N++ N+L N + V + L + DGFRFD A +
Sbjct: 122 TQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRFDAAKHIEL 180
Query: 146 GTDGS 150
DGS
Sbjct: 181 PDDGS 185
>pdb|1BAG|A Chain A, Alpha-Amylase From Bacillus Subtilis Complexed With
Maltopentaose
Length = 425
Score = 37.4 bits (85), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 38/125 (30%), Positives = 51/125 (40%), Gaps = 23/125 (18%)
Query: 39 LKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYM---VDGT 95
L EFKEM A GI+VI+D V NHT T + I N+V + G
Sbjct: 74 LGTEQEFKEMCAAAEEYGIKVIVDAVINHT---------TFDYAAISNEVKSIPNWTHGN 124
Query: 96 GQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 145
Q+ N++ N+L N + V + L + DGFRFD A +
Sbjct: 125 TQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRFDAAKHIEL 183
Query: 146 GTDGS 150
DGS
Sbjct: 184 PDDGS 188
>pdb|1M7X|A Chain A, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|B Chain B, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|C Chain C, The X-Ray Crystallographic Structure Of Branching Enzyme
pdb|1M7X|D Chain D, The X-Ray Crystallographic Structure Of Branching Enzyme
Length = 617
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 48/222 (21%), Positives = 77/222 (34%), Gaps = 45/222 (20%)
Query: 16 TWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH-------T 68
+WGY ++P R+ +F+ + A H AG+ VILD V H
Sbjct: 186 SWGYQPTGLYAPTRRFGTRD--------DFRYFIDAAHAAGLNVILDWVPGHFPTDDFAL 237
Query: 69 NEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV 128
E D N Y S D + Y D + NY V ++ + +W+
Sbjct: 238 AEFDGTNLYEHS----DPREGYHQDWNTLIYNYG---------RREVSNFLVGNALYWIE 284
Query: 129 EYHVDGFRFD-LASVLCRGTDGSP-------------LNAPPLIR---AIAKDAILSRCK 171
+ +D R D +AS++ R L A +R I + +
Sbjct: 285 RFGIDALRVDAVASMIYRDYSRKEGEWIPNEFGGRENLEAIEFLRNTNRILGEQVSGAVT 344
Query: 172 IIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP 213
+ E D G+ W +WN + D ++K DP
Sbjct: 345 MAEESTDFPGVSRPQDMGGLGFWYKWNLGWMHDTLDYMKLDP 386
>pdb|1AVA|A Chain A, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AVA|B Chain B, Amy2BASI PROTEIN-Protein Complex From Barley Seed
pdb|1AMY|A Chain A, Crystal And Molecular Structure Of Barley Alpha-Amylase
pdb|1BG9|A Chain A, Barley Alpha-Amylase With Substrate Analogue Acarbose
Length = 403
Score = 37.0 bits (84), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 49/116 (42%), Gaps = 20/116 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG---------------IDNK 87
+ K ++ ALHG G++ I D+V NH T E D F G D++
Sbjct: 69 QLKSLIGALHGKGVKAIADIVINHRTAEHKDGRGIYCIFEGGTPDARLDWGPHMICRDDR 128
Query: 88 VYYMVDGTGQLLNYAGCGNTLNCNH--PVVMELILDSLRHWVVEYHVDGFRFDLAS 141
Y DGTG A G + +H V + +++ L + DG+RFD A
Sbjct: 129 PY--ADGTGNPDTGADFGAAPDIDHLNLRVQKELVEWLNWLKADIGFDGWRFDFAK 182
>pdb|1JF5|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
pdb|1JF5|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2 Mutant F286a
Length = 585
Score = 35.8 bits (81), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETAAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|3DC0|A Chain A, Crystal Structure Of Native Alpha-Amylase From Bacillus
Sp. Kr-8104
Length = 422
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 34/124 (27%), Positives = 53/124 (42%), Gaps = 23/124 (18%)
Query: 39 LKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVD---GT 95
L + EFKEM A G++VI+D V NHT T+ + I N++ + + G
Sbjct: 71 LGSEEEFKEMCAAAEEYGVKVIVDAVINHT---------TSDYAAISNEIKSISNWTHGN 121
Query: 96 GQLLNYAG----CGNTL------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 145
Q+ N++ N+L N + V + L + DGFR+D A +
Sbjct: 122 TQIKNWSDRWDVTQNSLLGLYDWNTQNTQVQSYLKRFLER-ALNDGADGFRYDAAKHIEL 180
Query: 146 GTDG 149
DG
Sbjct: 181 PDDG 184
>pdb|1G1Y|A Chain A, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
pdb|1G1Y|B Chain B, Crystal Structure Of Alpha-Amylase Ii (Tvaii) From
Thermoactinomyces Vulgaris R-47 And Beta-Cyclodextrin
Complex
Length = 585
Score = 35.0 bits (79), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1BVZ|A Chain A, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1BVZ|B Chain B, Alpha-Amylase Ii (Tvaii) From Thermoactinomyces Vulgaris
R- 47
pdb|1JI2|A Chain A, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|1JI2|B Chain B, Improved X-Ray Structure Of Thermoactinomyces Vulgaris
R-47 Alpha-Amylase 2
pdb|3A6O|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
pdb|3A6O|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ACARBOSE COMPLEX
Length = 585
Score = 35.0 bits (79), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZM|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
pdb|1WZM|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-amylase Ii (tva Ii)
Mutatnt R469k
Length = 585
Score = 35.0 bits (79), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZK|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
pdb|1WZK|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt D465n
Length = 585
Score = 35.0 bits (79), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1WZL|A Chain A, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
pdb|1WZL|B Chain B, Thermoactinomyces Vulgaris R-47 Alpha-Amylase Ii (Tva Ii)
Mutatnt R469l
Length = 585
Score = 35.0 bits (79), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|1JF6|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
pdb|1JF6|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Mutant F286y
Length = 585
Score = 35.0 bits (79), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 30/111 (27%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R D+A+
Sbjct: 280 R-TNYETYAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLDVAN 328
>pdb|4GKL|A Chain A, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
pdb|4GKL|B Chain B, Crystal Structure Of A Noncanonic Maltogenic Alpha-amylase
Amyb From Thermotoga Neapolitana
Length = 422
Score = 35.0 bits (79), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 26/110 (23%), Positives = 56/110 (50%), Gaps = 25/110 (22%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV------YYMVDGTG- 96
+FK+ VK H + V++D+V NH +DN + +++ D G
Sbjct: 80 DFKKFVKRAHELNMYVLMDMVLNHA--------------AVDNVLVKKHPEWFLRDENGN 125
Query: 97 ---QLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143
++ +++ + + ++ + E +++ +R+WV E+ VDGFR D+A ++
Sbjct: 126 PTRKVPDWSDVVD-FDYSNGELREYMINMMRYWVEEFDVDGFRCDVAGLV 174
>pdb|3BSH|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) Double Mutant
Y105aY380A IN COMPLEX WITH INHIBITOR ACARBOSE
Length = 414
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 60/239 (25%), Positives = 93/239 (38%), Gaps = 51/239 (21%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTSFRG--IDNKVYY---MV----- 92
E K ++ ALHG G++ I D+V NH + D+ F G D ++ + M+
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINHRCADYKDSRGIACIFEGGTSDGRLDWGPHMICRDDT 129
Query: 93 ---DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVV----EYHVDGFRFDLASVLCR 145
DGT L A + +H + + + L+ W++ + D +R D A R
Sbjct: 130 KYSDGTANLDTGADFAAAPDIDH--LNDRVQRELKEWLLWLKSDLGFDAWRLDFA----R 183
Query: 146 GTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAE------WNG 199
G SP A I S +AE WD GK PN+D+ A W
Sbjct: 184 GY--SPEMAKVYIDGT------SPSLAVAEVWDNMATGGDGK-PNYDQDAHRQNLVNWVD 234
Query: 200 KYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRK----------PYHSINFIIAHD 248
K + D KGIL + G +L+R+ + P ++ F+ HD
Sbjct: 235 KVGGAASAGMVFDFTTKGILNAAVEG--ELWRLIDPQGKAPGVMGWWPAKAVTFVDNHD 291
>pdb|1JGI|A Chain A, Crystal Structure Of The Active Site Mutant Glu328gln Of
Amylosucrase From Neisseria Polysaccharea In Complex
With The Natural Substrate Sucrose
Length = 628
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|1MVY|A Chain A, Amylosucrase Mutant E328q Co-Crystallized With
Maltoheptaose.
pdb|1MW0|A Chain A, Amylosucrase Mutant E328q Co-crystallized With
Maltoheptaose Then Soaked With Maltoheptaose.
pdb|1S46|A Chain A, Covalent Intermediate Of The E328q Amylosucrase Mutant
pdb|1ZS2|A Chain A, Amylosucrase Mutant E328q In A Ternary Complex With
Sucrose And Maltoheptaose
Length = 628
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLS|A Chain A, Crystal Structure Of Amylosucrase Inactive Double Mutant
F290k-E328q From Neisseria Polysaccharea In Complex With
Sucrose
Length = 628
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLO|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290c From Neisseria Polysaccharea
Length = 628
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|3UEQ|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With Turanose
Length = 632
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 168 DLREVIAALHEAGISAVVDFIFNHTS 193
>pdb|1G5A|A Chain A, Amylosucrase From Neisseria Polysaccharea
pdb|1JG9|A Chain A, Crystal Structure Of Amylosucrase From Neisseria
Polysaccharea In Complex With D-glucose
pdb|1MW1|A Chain A, Amylosucrase Soaked With 14mm Sucrose.
pdb|1MW2|A Chain A, Amylosucrase Soaked With 100mm Sucrose
pdb|1MW3|A Chain A, Amylosucrase Soaked With 1m Sucrose
Length = 628
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLQ|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290i From Neisseria Polysaccharea
Length = 628
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|4FLR|A Chain A, Crystal Structure Of Amylosucrase Double Mutant
A289p-F290l From Neisseria Polysaccharea
Length = 628
Score = 33.5 bits (75), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 11/26 (42%), Positives = 20/26 (76%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTN 69
+ +E++ ALH AGI ++D ++NHT+
Sbjct: 164 DLREVIAALHEAGISAVVDFIFNHTS 189
>pdb|3BSG|A Chain A, Barley Alpha-Amylase Isozyme 1 (Amy1) H395a Mutant
Length = 414
Score = 33.5 bits (75), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH 67
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 63/154 (40%), Gaps = 35/154 (22%)
Query: 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE------- 70
GY N+ M Y G ++ +F +V + + +++DVV NHT++
Sbjct: 76 GYDISNYRQIMKEY-----GTME---DFDSLVAEMKKRNMRLMIDVVINHTSDQHPWFIQ 127
Query: 71 --ADDANPYTTSF---RGIDNK------------VYYMVDGTGQ--LLNYAGCGNTLNCN 111
+D NPY + G DN+ + +GQ L +A LN +
Sbjct: 128 SKSDKNNPYRDYYFWRDGKDNQPPNNYPSFFGGSAWQKDAKSGQYYLHYFARQQPDLNWD 187
Query: 112 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 145
+P V E + LR W ++ V G RFD + +
Sbjct: 188 NPKVREDLYAMLRFW-LDKGVSGMRFDTVATYSK 220
>pdb|2QPS|A Chain A, "sugar Tongs" Mutant Y380a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH 67
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|2QPU|A Chain A, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|B Chain B, Sugar Tongs Mutant S378p In Complex With Acarbose
pdb|2QPU|C Chain C, Sugar Tongs Mutant S378p In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH 67
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1HT6|A Chain A, Crystal Structure At 1.5a Resolution Of The Barley
Alpha- Amylase Isozyme 1
pdb|1P6W|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) In Complex With The Substrate Analogue, Methyl
4i,4ii,4iii- Tri-Thiomaltotetraoside (Thio-Dp4)
pdb|1RPK|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH 67
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|1RP8|A Chain A, Crystal Structure Of Barley Alpha-Amylase Isozyme 1
(Amy1) Inactive Mutant D180a In Complex With
Maltoheptaose
pdb|1RP9|A Chain A, Crystal Structure Of Barley Alpha-amylase Isozyme 1
(amy1) Inactive Mutant D180a In Complex With Acarbose
Length = 405
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 12/24 (50%), Positives = 17/24 (70%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH 67
E K ++ ALHG G++ I D+V NH
Sbjct: 70 ELKSLIGALHGKGVQAIADIVINH 93
>pdb|3BMV|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
pdb|3BMW|A Chain A, Cyclodextrin Glycosyl Transferase From
Thermoanerobacterium Thermosulfurigenes Em1 Mutant S77p
Complexed With A Maltoheptaose Inhibitor
Length = 683
Score = 33.5 bits (75), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1PEZ|A Chain A, Bacillus Circulans Strain 251 Mutant A230v
Length = 686
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 50/115 (43%), Gaps = 20/115 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 139
+ G + LN N+ V + D+++ W ++ +DG R D+
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMDV 230
>pdb|1A47|A Chain A, Cgtase From Thermoanaerobacterium Thermosulfurigenes Em1
In Complex With A Maltohexaose Inhibitor
pdb|1CIU|A Chain A, Thermostable Cgtase From Thermoanaerobacterium
Thermosulfurigenes Em1 At Ph 8.0
Length = 683
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+F+ ++ H I+VI+D NHT+ A + +P Y + R DN Y D G
Sbjct: 118 DFQNLINTAHAHNIKVIIDFAPNHTSPASETDPTYAENGRLYDNGTLLGGYTNDTNGYFH 177
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN + + + +++ W ++ +DG R D
Sbjct: 178 HYGGTDFSSYEDGIYRNLFDLADLNQQNSTIDSYLKSAIKVW-LDMGIDGIRLD 230
>pdb|1VFM|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFM|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2ALPHA-Cyclodextrin Complex
pdb|1VFO|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFO|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase 2BETA-Cyclodextrin Complex
pdb|1VFU|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
pdb|1VFU|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Amylase 2GAMMA-Cyclodextrin Complex
Length = 585
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R ++A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|4GI6|A Chain A, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI6|B Chain B, Crystal Structure Of The Mutb F164l Mutant In Complex With
Glucose
pdb|4GI8|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI8|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With The Substrate Sucrose
pdb|4GI9|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GI9|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Trehalulose
pdb|4GIA|A Chain A, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
pdb|4GIA|B Chain B, Crystal Structure Of The Mutb F164l Mutant From Crystals
Soaked With Isomaltulose
Length = 557
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 61/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG 94
+F ++ L G+ +++DVV NH+++ A NPY + D K + +
Sbjct: 81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 140
Query: 95 ---------------TGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 141 YPSFFGGSAWEKDPVTGQYYLHYLGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 199
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 200 DTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|1JL8|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JL8|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Beta-Cyclodextrin
Based On A Co- Crystallization With Methyl
Beta-Cyclodextrin
pdb|1JIB|A Chain A, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1JIB|B Chain B, Complex Of Alpha-Amylase Ii (Tva Ii) From
Thermoactinomyces Vulgaris R-47 With Maltotetraose Based
On A Crystal Soaked With Maltohexaose.
pdb|1VB9|A Chain A, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|1VB9|B Chain B, Crystal Structure Of Thermoactinomyces Vulgaris R-47
Alpha- Amylase Ii (Tva Ii) Complexed With
Transglycosylated Product
pdb|2D2O|A Chain A, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
pdb|2D2O|B Chain B, Structure Of A Complex Of Thermoactinomyces Vulgaris R-47
Alpha-Amylase 2 With Maltohexaose Demonstrates The
Important Role Of Aromatic Residues At The Reducing End
Of The Substrate Binding Cleft
Length = 585
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 29/111 (26%), Positives = 47/111 (42%), Gaps = 18/111 (16%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY--------YMVDGTG 96
F+ +V H GI++ILD V+NH D + + + Y + V T
Sbjct: 222 FRRLVDEAHRRGIKIILDAVFNHA--GDQFFAFRDVLQKGEQSRYKDWFFIEDFPVSKTS 279
Query: 97 QLLNYAGCG------NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141
+ NY L +P V E + D R W +E +DG+R ++A+
Sbjct: 280 R-TNYETFAVQVPAMPKLRTENPEVKEYLFDVARFW-MEQGIDGWRLNVAN 328
>pdb|1ZJA|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJA|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Triclinic Form)
pdb|1ZJB|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|1ZJB|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 (Monoclinic Form)
pdb|2PWD|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
pdb|2PWD|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Deoxynojirmycin
Length = 557
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNK------- 87
+F ++ L G+ +++DVV NH+++ A NPY + D K
Sbjct: 81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 140
Query: 88 --------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
+ TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 141 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 199
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 200 DTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|2PWE|A Chain A, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
pdb|2PWE|B Chain B, Crystal Structure Of The Mutb E254q Mutant In Complex With
The Substrate Sucrose
Length = 556
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNK------- 87
+F ++ L G+ +++DVV NH+++ A NPY + D K
Sbjct: 80 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 139
Query: 88 --------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
+ TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 140 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 198
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 199 DTVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|2PWG|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWG|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45 Complexed To The
Inhibitor Castanospermine
pdb|2PWH|A Chain A, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
pdb|2PWH|B Chain B, Crystal Structure Of The Trehalulose Synthase Mutb From
Pseudomonas Mesoacidophila Mx-45
Length = 556
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNK------- 87
+F ++ L G+ +++DVV NH+++ A NPY + D K
Sbjct: 80 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 139
Query: 88 --------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
+ TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 140 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 198
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 199 DTVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|1CXL|A Chain A, Complex Between A Covalent Intermediate And Bacillus
Circulans Strain 251 Cgtase E257q
Length = 686
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1PJ9|A Chain A, Bacillus Circulans Strain 251 Loop Mutant 183-195
Length = 686
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSSYEDGIYRNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|4H2C|A Chain A, Trehalulose Synthase Mutb R284c Mutant
Length = 557
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNK------- 87
+F ++ L G+ +++DVV NH+++ A NPY + D K
Sbjct: 81 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 140
Query: 88 --------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
+ TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 141 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 199
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 200 DTVATYSK-TPGFPDLTPEQMKNFAE 224
>pdb|1CGY|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLWDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CDG|A Chain A, Nucleotide Sequence And X-Ray Structure Of Cyclodextrin
Glycosyltransferase From Bacillus Circulans Strain 251
In A Maltose-Dependent Crystal Form
pdb|1CXE|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.1 Based On Diffraction Data Of A Crystal Soaked
With Alpha-Cyclodextrin
pdb|1CXH|A Chain A, Complex Of Cgtase With Maltotetraose At Room Temperature
And Ph 9.6 Based On Diffraction Data Of A Crystal Soaked
With Maltoheptaose
pdb|1CXI|A Chain A, Wild-Type Cgtase From Bacillus Circulans Strain 251 At 120
K And Ph 7.55
pdb|2CXG|A Chain A, Cyclodextrin Glycosyltransferase Complexed To The
Inhibitor Acarbose
Length = 686
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGV|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
pdb|2DIJ|A Chain A, Complex Of A Y195f Mutant Cgtase From B. Circulans Strain
251 Complexed With A Maltononaose Inhibitor At Ph 9.8
Obtained After Soaking The Crystal With Acarbose And
Maltohexaose
Length = 686
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLFDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGW|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glycosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLGDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CGX|A Chain A, Site Directed Mutations Of The Active Site Residue
Tyrosine 195 Of Cyclodextrin Glyxosyltransferase From
Bacillus Circulans Strain 251 Affecting Activity And
Product Specificity
Length = 686
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 49/124 (39%), Gaps = 40/124 (32%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-----------------YT-------- 78
+F+ ++ A H I+VI+D NHT+ A P YT
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 79 ----TSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDG 134
T F +N +Y LL+ A LN N+ V + D+++ W ++ +DG
Sbjct: 177 HNGGTDFSTTENGIYK------NLLDLA----DLNHNNSTVDVYLKDAIKMW-LDLGIDG 225
Query: 135 FRFD 138
R D
Sbjct: 226 IRMD 229
>pdb|1TCM|A Chain A, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
pdb|1TCM|B Chain B, Cyclodextrin Glycosyltransferase W616a Mutant From
Bacillus Circulans Strain 251
Length = 686
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1KCK|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant N193g
Length = 686
Score = 32.7 bits (73), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKGLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|4GIN|A Chain A, Crystal Structure Of The Mutb R284c Mutant From Crystals
Soaked With The Inhibitor Deoxynojirimycin
Length = 584
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNK------- 87
+F ++ L G+ +++DVV NH+++ A NPY + D K
Sbjct: 108 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 167
Query: 88 --------VYYMVDGTGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
+ TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 168 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 226
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
D + + T G P P ++ A+
Sbjct: 227 DTVATYSK-TPGFPDLTPEQMKNFAE 251
>pdb|4CGT|A Chain A, Deletion Mutant Delta(145-150), F151d Of Cyclodextrin
Glycosyltransferase
Length = 678
Score = 32.0 bits (71), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 27/118 (22%), Positives = 49/118 (41%), Gaps = 34/118 (28%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEAD------------------DANPY-----TTS 80
+F+ ++ H GI++++D NHT+ AD D N Y +
Sbjct: 117 DFQNLITTAHAKGIKIVIDFAPNHTSPADAENGRLYDNGTLVGGYTNDTNGYFHHNGGSD 176
Query: 81 FRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
F ++N +Y L + A N N+ + + D+++ W ++ VDG R D
Sbjct: 177 FSSLENGIY------KNLYDLAD----FNHNNATIDKYFKDAIKLW-LDMGVDGIRVD 223
>pdb|1DTU|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase: A Mutant Y89dS146P COMPLEXED TO AN
Hexasaccharide Inhibitor
Length = 686
Score = 32.0 bits (71), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 28/114 (24%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASPDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|3DHP|A Chain A, Probing The Role Of Aromatic Residues At The Secondary
Saccharide Binding Sites Of Human Salivary Alpha-Amylase
In Substrate Hydrolysis And Bacterial Binding
Length = 496
Score = 32.0 bits (71), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 48/128 (37%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDANPYTTS---------------FRGIDNK 87
EF+ MV + G+ + +D V NH A A +T + G D
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGADFN 137
Query: 88 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMAPG 205
>pdb|4AEE|A Chain A, Crystal Structure Of Maltogenic Amylase From S.Marinus
pdb|4AEE|B Chain B, Crystal Structure Of Maltogenic Amylase From S.Marinus
Length = 696
Score = 31.6 bits (70), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 2/47 (4%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 90
+F+++V+ LH I+++LD+ +HTN ++ + + R +N Y+
Sbjct: 313 DFEKLVQVLHSRKIKIVLDITMHHTNPCNEL--FVKALREGENSPYW 357
>pdb|1GJU|A Chain A, Maltosyltransferase From Thermotoga Maritima
pdb|1GJW|A Chain A, Thermotoga Maritima Maltosyltransferase Complex With
Maltose
Length = 637
Score = 31.6 bits (70), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 21/46 (45%)
Query: 19 YSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 64
YS N RY P K EFK V+A H GI VILD +
Sbjct: 158 YSVKNPMELDERYHDPLLEPFKVDEEFKAFVEACHILGIRVILDFI 203
>pdb|1HVX|A Chain A, Bacillus Stearothermophilus Alpha-Amylase
Length = 515
Score = 31.6 bits (70), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 45/107 (42%), Gaps = 20/107 (18%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEAD-----DANPYTTSFRGIDNKVYYMVDGTGQL 98
++ + ++A H AG++V DVV++H AD DA S R + Y + +
Sbjct: 83 QYLQAIQAAHAAGMQVYADVVFDHKGGADGTEWVDAVEVNPSDRNQEISGTYQIQAWTK- 141
Query: 99 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR 145
++ G GNT + W YH DG +D + L R
Sbjct: 142 FDFPGRGNTYSSFK-----------WRW---YHFDGVDWDESRKLSR 174
>pdb|2ZE0|A Chain A, Alpha-glucosidase Gsj
Length = 555
Score = 31.2 bits (69), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 32/65 (49%), Gaps = 11/65 (16%)
Query: 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPY 77
GY ++++ M + +F E++ H G++VILD+V NHT+ D +P+
Sbjct: 62 GYDISDYYAIMDEFGTMD--------DFDELLAQAHRRGLKVILDLVINHTS---DEHPW 110
Query: 78 TTSFR 82
R
Sbjct: 111 FIESR 115
>pdb|1UKS|A Chain A, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
pdb|1UKS|B Chain B, Crystal Structure Of F183lF259L MUTANT CYCLODEXTRIN
Glucanotransferase Complexed With A Pseudo-Maltotetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDLSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1UKT|A Chain A, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
pdb|1UKT|B Chain B, Crystal Structure Of Y100l Mutant Cyclodextrin
Glucanotransferase Compexed With An Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1V3J|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3J|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3L|A Chain A, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
pdb|1V3L|B Chain B, Crystal Structure Of F283l Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-tetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1PAM|A Chain A, Cyclodextrin Glucanotransferase
pdb|1PAM|B Chain B, Cyclodextrin Glucanotransferase
pdb|1I75|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1I75|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase From
Alkalophilic Bacillus Sp.#1011 Complexed With
1-Deoxynojirimycin
pdb|1UKQ|A Chain A, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
pdb|1UKQ|B Chain B, Crystal Structure Of Cyclodextrin Glucanotransferase
Complexed With A Pseudo-Maltotetraose Derived From
Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1V3K|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3K|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase
pdb|1V3M|A Chain A, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
pdb|1V3M|B Chain B, Crystal Structure Of F283y Mutant Cyclodextrin
Glycosyltransferase Complexed With A Pseudo-Tetraose
Derived From Acarbose
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1D7F|A Chain A, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1D7F|B Chain B, Crystal Structure Of Asparagine 233-Replaced Cyclodextrin
Glucanotransferase From Alkalophilic Bacillus Sp. 1011
Determined At 1.9 A Resolution
pdb|1DED|A Chain A, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
pdb|1DED|B Chain B, Crystal Structure Of Alkalophilic Asparagine 233-Replaced
Cyclodextrin Glucanotransferase Complexed With An
Inhibitor, Acarbose, At 2.0 A Resolution
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 30/114 (26%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVY---YMVDGTGQLL 99
+FK ++ H I+VI+D NHT+ A +P + + R DN Y D
Sbjct: 117 DFKNLIDTAHAHNIKVIIDFAPNHTSPASSDDPSFAENGRLYDNGNLLGGYTNDTQNLFH 176
Query: 100 NYAGCGNT---------------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+Y G + LN N+ V + D+++ W ++ VDG R D
Sbjct: 177 HYGGTDFSTIENGIYKNLYDLADLNHNNSSVDVYLKDAIKMW-LDLGVDGIRVD 229
>pdb|1KCL|A Chain A, Bacillus Ciruclans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant G179l
Length = 686
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 27/128 (21%), Positives = 47/128 (36%), Gaps = 48/128 (37%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP--------------------------- 76
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 77 ------YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 130
++T+ GI +Y + D LN N+ V + D+++ W ++
Sbjct: 177 HNLGTDFSTTENGIYKNLYDLAD--------------LNHNNSTVDVYLKDAIKMW-LDL 221
Query: 131 HVDGFRFD 138
+DG R D
Sbjct: 222 GIDGIRMD 229
>pdb|1OT2|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135n
Length = 686
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI++ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIINFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|1CXK|A Chain A, Complex Between A Maltononaose Substrate And Bacillus
Circulans Strain 251 Cgtase E257qD229N
pdb|1D3C|A Chain A, Michaelis Complex Of Bacillus Circulans Strain 251
Cyclodextrin Glycosyltransferase With Gamma-Cyclodextrin
pdb|1CXF|A Chain A, Complex Of A (D229nE257Q) DOUBLE MUTANT CGTASE FROM
Bacillus Circulans Strain 251 With Maltotetraose At 120
K And Ph 9.1 Obtained After Soaking The Crystal With
Alpha- Cyclodextrin
Length = 686
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+D NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R +
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMN 229
>pdb|1B2Y|A Chain A, Structure Of Human Pancreatic Alpha-Amylase In Complex
With The Carbohydrate Inhibitor Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1XGZ|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase
pdb|1XH0|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Acarbose
pdb|1XH1|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride
pdb|1XH2|A Chain A, Structure Of The N298s Variant Of Human Pancreatic
Alpha-Amylase Complexed With Chloride And Acarbose
pdb|3BAK|A Chain A, N298s Mutant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate
pdb|3BAX|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Azide
pdb|3BAY|A Chain A, N298s Variant Of Human Pancreatic Alpha-Amylase In Complex
With Nitrate And Acarbose
Length = 496
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|1U2Y|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
D-Gluconhydroximo-1,5-Lactam
pdb|1U30|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors, Structure Containing
Maltosyl-Alpha (1,4)-D- Gluconhydroximo-1,5-Lactam
pdb|1U33|A Chain A, In Situ Extension As An Approach For Identifying Novel
Alpha-Amylase Inhibitors
pdb|1XCW|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XCX|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD0|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1XD1|A Chain A, Acarbose Rearrangement Mechanism Implied By The Kinetic
And Structural Analysis Of Human Pancreatic
Alpha-Amylase In Complex With Analogues And Their
Elongated Counterparts
pdb|1BSI|A Chain A, Human Pancreatic Alpha-Amylase From Pichia Pastoris,
Glycosylated Protein
pdb|1HNY|A Chain A, The Structure Of Human Pancreatic Alpha-Amylase At 1.8
Angstroms Resolution And Comparisons With Related
Enzymes
pdb|2QMK|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite
pdb|2QV4|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Nitrite And
Acarbose
pdb|3BAI|A Chain A, Human Pancreatic Alpha Amylase With Bound Nitrate
pdb|3BAJ|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Nitrate And
Acarbose
pdb|3BAW|A Chain A, Human Pancreatic Alpha-Amylase Complexed With Azide
pdb|3IJ7|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ8|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|3IJ9|A Chain A, Directed 'in Situ' Elongation As A Strategy To
Characterize The Covalent Glycosyl-Enzyme Catalytic
Intermediate Of Human Pancreatic A-Amylase
pdb|4GQQ|A Chain A, Human Pancreatic Alpha-Amylase With Bound Ethyl Caffeate
pdb|4GQR|A Chain A, Human Pancreatic Alpha-Amylase In Complex With Myricetin
Length = 496
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|2CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
pdb|3CPU|A Chain A, Subsite Mapping Of The Active Site Of Human Pancreatic
Alpha-Amylase Using Substrates, The Pharmacological
Inhibitor Acarbose, And An Active Site Variant
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KBB|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha- Amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3OLD|A Chain A, Crystal Structure Of Alpha-Amylase In Complex With
Acarviostatin I03
pdb|3OLE|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Ii03
pdb|3OLG|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iii03
pdb|3OLI|A Chain A, Structures Of Human Pancreatic Alpha-Amylase In Complex
With Acarviostatin Iv03
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KGU|A Chain A, Three Dimensional Structure Analysis Of The R337a Variant
Of Human Pancreatic Alpha-Amylase
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1KGW|A Chain A, Three Dimensional Structure Analysis Of The R337q Variant
Of Human Pancreatic Alpha-Mylase
Length = 496
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1Q4N|X Chain X, Structural Studies Of Phe256trp Of Human Salivary Alpha-
Amylase: Implications For The Role Of A Conserved Water
Molecule And Its Associated Chain In Enzyme Activity
Length = 496
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1MWO|A Chain A, Crystal Structure Analysis Of The Hyperthermostable
Pyrocoocus Woesei Alpha-Amylase
pdb|1MXD|A Chain A, Structure Of A (Ca,Zn)-Dependent Alpha-Amylase From The
Hyperthermophilic Archaeon Pyrococcus Woesei
pdb|1MXG|A Chain A, Crystal Strucutre Of A (Ca,Zn)-Dependent Alpha-Amylase
From The Hyperthermophilic Archaeon Pyrococcus Woesei In
Complex With Acarbose
Length = 435
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 85
E +++ H GI+VI DVV NH D + NP+ + D
Sbjct: 88 ELVRLIQTAHAYGIKVIADVVINHRAGGDLEWNPFVGDYTWTD 130
>pdb|1C8Q|A Chain A, Structure Solution And Refinement Of The Recombinant Human
Salivary Amylase
pdb|1MFV|A Chain A, Probing The Role Of A Mobile Loop In Human Slaivary
Amylase: Structural Studies On The Loop-Deleted Enzyme
pdb|1XV8|A Chain A, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1XV8|B Chain B, Crystal Structure Of Human Salivary Alpha-Amylase Dimer
pdb|1SMD|A Chain A, Human Salivary Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1JXK|A Chain A, Role Of Ethe Mobile Loop In The Mehanism Of Human Salivary
Amylase
pdb|1MFU|A Chain A, Probing The Role Of A Mobile Loop In Human Salivary
Amylase: Structural Studies On The Loop-Deleted Mutant
Length = 491
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 32/128 (25%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|1NM9|A Chain A, Crystal Structure Of Recombinant Human Salivary Amylase
Mutant W58a
Length = 496
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3BLK|A Chain A, Role Of Aromatic Residues In Starch Binding
Length = 496
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3BLP|X Chain X, Role Of Aromatic Residues In Human Salivary Alpha-Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1JXJ|A Chain A, Role Of Mobile Loop In The Mechanism Of Human Salivary
Amylase
Length = 496
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GFR D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLSGLLDLALGKDYVRSKIAEYMNHLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1EO5|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltoheptaose
pdb|1EO7|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin
Glycosyltransferase In Complex With Maltohexaose
Length = 686
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76
+F+ ++ A H I+VI+D NHT+ A P
Sbjct: 117 DFQNLIAAAHAKNIKVIIDFAPNHTSPASSDQP 149
>pdb|2AAA|A Chain A, Calcium Binding In Alpha-Amylases: An X-Ray Diffraction
Study At 2.1 Angstroms Resolution Of Two Enzymes From
Aspergillus
Length = 484
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 29/107 (27%), Positives = 44/107 (41%), Gaps = 13/107 (12%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKVYY----MVDGTGQLL 99
K + ALH G+ +++DVV +H A + N S F D+ Y+ ++ L
Sbjct: 100 LKSLSDALHARGMYLMVDVVPDHMGYAGNGNDVDYSVFDPFDSSSYFHPYCLITDWDNLT 159
Query: 100 NYAGC--GNT------LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
C G+T L+ V + D + V Y VDG R D
Sbjct: 160 MVEDCWEGDTIVSLPDLDTTETAVRTIWYDWVADLVSNYSVDGLRID 206
>pdb|2PWF|A Chain A, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|B Chain B, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|C Chain C, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
pdb|2PWF|D Chain D, Crystal Structure Of The Mutb D200a Mutant In Complex With
Glucose
Length = 556
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 60/146 (41%), Gaps = 28/146 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNE---------ADDANPYTTSFRGIDNKVYYMVDG 94
+F ++ L G+ +++DVV NH+++ A NPY + D K + +
Sbjct: 80 DFDRLMAELKKRGMRLMVDVVINHSSDQHEWFKSSRASKDNPYRDYYFWRDGKDGHEPNN 139
Query: 95 ---------------TGQ-LLNYAGCGNT-LNCNHPVVMELILDSLRHWVVEYHVDGFRF 137
TGQ L+Y G LN + P + E + LR W ++ V G RF
Sbjct: 140 YPSFFGGSAWEKDPVTGQYYLHYFGRQQPDLNWDTPKLREELYAMLRFW-LDKGVSGMRF 198
Query: 138 DLASVLCRGTDGSPLNAPPLIRAIAK 163
+ + T G P P ++ A+
Sbjct: 199 ATVATYSK-TPGFPDLTPEQMKNFAE 223
>pdb|1OT1|A Chain A, Bacillus Circulans Strain 251 Cyclodextrin Glycosyl
Transferase Mutant D135a
Length = 686
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 48/114 (42%), Gaps = 20/114 (17%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYY--MVDGTGQLLN 100
+F+ ++ A H I+VI+ NHT+ A P + + R DN + T L +
Sbjct: 117 DFQNLIAAAHAKNIKVIIAFAPNHTSPASSDQPSFAENGRLYDNGTLLGGYTNDTQNLFH 176
Query: 101 YAGCGN----------------TLNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G + LN N+ V + D+++ W ++ +DG R D
Sbjct: 177 HNGGTDFSTTENGIYKNLYDLADLNHNNSTVDVYLKDAIKMW-LDLGIDGIRMD 229
>pdb|3L4T|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Bj2661
pdb|3L4U|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With De-O-Sulfonated Kotalanol
pdb|3L4V|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Kotalanol
pdb|3L4W|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Miglitol
pdb|3L4X|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8
pdb|3L4Y|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Nr4-8ii
pdb|3L4Z|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Salacinol
Length = 875
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 103
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 104 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 150
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 151 PLNAPPLIRAIAKDAILSRCKIIA 174
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|2QLY|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase
pdb|2QMJ|A Chain A, Crystral Structure Of The N-Terminal Subunit Of Human
Maltase- Glucoamylase In Complex With Acarbose
pdb|3CTT|A Chain A, Crystal Complex Of N-Terminal Human Maltase-Glucoamylase
With Casuarine
Length = 870
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 38/144 (26%), Positives = 54/144 (37%), Gaps = 21/144 (14%)
Query: 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY-MVDGTGQLLNYAG 103
F E V LH G ++++ V +N + + PY RG D K++ DG L+
Sbjct: 347 FPEFVNELHNNGQKLVIIVDPAISNNSSSSKPYGPYDRGSDMKIWVNSSDGVTPLIGEVW 406
Query: 104 CGNTL-------NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASV------LCRGTDGS 150
G T+ NC E L H VE+ DG D+ V G +
Sbjct: 407 PGQTVFPDYTNPNCAVWWTKEF---ELFHNQVEF--DGIWIDMNEVSNFVDGSVSGCSTN 461
Query: 151 PLNAPPLIRAIAKDAILSRCKIIA 174
LN PP I + CK +
Sbjct: 462 NLNNPPFTPRILDGYLF--CKTLC 483
>pdb|1BVN|P Chain P, Pig Pancreatic Alpha-Amylase In Complex With The
Proteinaceous Inhibitor Tendamistat
Length = 496
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRLD 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1UOK|A Chain A, Crystal Structure Of B. Cereus Oligo-1,6-Glucosidase
Length = 558
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 61/136 (44%), Gaps = 32/136 (23%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKV--YYM---------- 91
++ E++ +H +++++D+V NHT +D+ N + S + DNK YY+
Sbjct: 80 DWDELLHEMHERNMKLMMDLVVNHT--SDEHNWFIESRKSKDNKYRDYYIWRPGKEGKEP 137
Query: 92 ----VDGTGQLLNYAGCGNT------------LNCNHPVVMELILDSLRHWVVEYHVDGF 135
+G Y + LN ++ V + + + ++ W +E +DGF
Sbjct: 138 NNWGAAFSGSAWQYDEMTDEYYLHLFSKKQPDLNWDNEKVRQDVYEMMKFW-LEKGIDGF 196
Query: 136 RFDLASVLCRGTDGSP 151
R D+ + + + +G P
Sbjct: 197 RMDVINFISK-EEGLP 211
>pdb|1JFH|A Chain A, Structure Of A Pancreatic Alpha-Amylase Bound To A
Substrate Analogue At 2.03 Angstrom Resolution
Length = 496
Score = 29.6 bits (65), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1OSE|A Chain A, Porcine Pancreatic Alpha-Amylase Complexed With Acarbose
Length = 496
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|6CGT|A Chain A, Hoxa Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 50/117 (42%), Gaps = 26/117 (22%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSF----RGIDNKVY---YMVDGTG 96
+F+ ++ H GI++++D NHT+ A + + TSF R DN Y D G
Sbjct: 117 DFQNLITTAHAKGIKIVIDFAPNHTSPAMETD---TSFAENGRLYDNGTLVGGYTNDTNG 173
Query: 97 QLLNYAGC----------GNT-----LNCNHPVVMELILDSLRHWVVEYHVDGFRFD 138
+ G NT N N+ + + D+++ W ++ VDG R D
Sbjct: 174 YFHHNGGSDFSSLENGIYKNTYDLADFNHNNATIDKYFKDAIKLW-LDMGVDGIRVD 229
>pdb|1KXQ|A Chain A, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|B Chain B, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|C Chain C, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXQ|D Chain D, Camelid Vhh Domain In Complex With Porcine Pancreatic
Alpha- Amylase
pdb|1KXT|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|C Chain C, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXT|E Chain E, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|A Chain A, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
pdb|1KXV|B Chain B, Camelid Vhh Domains In Complex With Porcine Pancreatic
Alpha-Amylase
Length = 496
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1PPI|A Chain A, The Active Center Of A Mammalian Alpha-Amylase. The
Structure Of The Complex Of A Pancreatic Alpha-Amylase
With A Carbohydrate Inhibitor Refined To 2.2 Angstroms
Resolution
Length = 496
Score = 29.6 bits (65), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1DHK|A Chain A, Structure Of Porcine Pancreatic Alpha-Amylase
Length = 496
Score = 29.3 bits (64), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1PIF|A Chain A, Pig Alpha-amylase
pdb|1PIG|A Chain A, Pig Pancreatic Alpha-Amylase Complexed With The
Oligosaccharide V-1532
Length = 496
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 48/122 (39%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP + F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGSREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3QGV|A Chain A, Crystal Structure Of A Thermostable Amylase Variant
Length = 435
Score = 29.3 bits (64), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGID 85
E M+ H G++VI D+V NH D + NP+ + D
Sbjct: 88 ELVNMINTAHAYGMKVIADIVINHRAGGDLEWNPFVNDYTWTD 130
>pdb|1KGX|A Chain A, Three Dimensional Structure Analysis Of The R195q Variant
Of Human Pancreatic Alpha Amylase
Length = 496
Score = 29.3 bits (64), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 31/128 (24%), Positives = 50/128 (39%), Gaps = 25/128 (19%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRFD 138
D G+G + NY +C +++L L D +R + EY V GF+ D
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFQLD 197
Query: 139 LASVLCRG 146
+ + G
Sbjct: 198 ASKHMWPG 205
>pdb|8CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltohexaose
pdb|9CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With A Thio-Maltopentaose
pdb|3CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Complexed
With Its Main Product Beta-Cyclodextrin
Length = 684
Score = 28.9 bits (63), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEA 71
+F+ ++ H GI++++D NHT+ A
Sbjct: 117 DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1CGT|A Chain A, Structure Of Cyclodextrin Glycosyltransferase Refined At
2.0 Angstroms Resolution
Length = 684
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEA 71
+F+ ++ H GI++++D NHT+ A
Sbjct: 117 DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1CGU|A Chain A, Catalytic Center Of Cyclodextrin Glycosyltransferase
Derived From X-Ray Structure Analysis Combined With
Site- Directed Mutagenesis
pdb|5CGT|A Chain A, Maltotriose Complex Of Preconditioned Cyclodextrin
Glycosyltransferase Mutant
pdb|7CGT|A Chain A, Rameb Complex Of Cyclodextrin Glycosyltransferase Mutant
Length = 684
Score = 28.9 bits (63), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 9/28 (32%), Positives = 18/28 (64%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEA 71
+F+ ++ H GI++++D NHT+ A
Sbjct: 117 DFQNLITTAHAKGIKIVIDFAPNHTSPA 144
>pdb|1HX0|A Chain A, Structure Of Pig Pancreatic Alpha-Amylase Complexed With
The "truncate" Acarbose Molecule (Pseudotrisaccharide)
pdb|1WO2|A Chain A, Crystal Structure Of The Pig Pancreatic Alpha-Amylase
Complexed With Malto-Oligosaacharides Under The Effect
Of The Chloride Ion
Length = 496
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3L2L|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Limit Dextrin And Oligosaccharide
pdb|3L2M|A Chain A, X-Ray Crystallographic Analysis Of Pig Pancreatic
Alpha-Amylase With Alpha-Cyclodextrin
Length = 496
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1UA3|A Chain A, Crystal Structure Of The Pig Pancreatic A-Amylase
Complexed With Malto-Oligosaccharides
Length = 496
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|1VAH|A Chain A, Crystal Structure Of The Pig Pancreatic-Amylase Complexed
With R-Nitrophenyl-A-D-Maltoside
Length = 496
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 47/122 (38%), Gaps = 25/122 (20%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-----------TNEADDANPYTTSFRGIDNKVYYMV 92
EF++MV + G+ + +D V NH T NP F + +
Sbjct: 78 EFRDMVTRCNNVGVRIYVDAVINHMCGSGAAAGTGTTCGSYCNPGNREFPAVPYSAWDFN 137
Query: 93 DG-----TGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEY-------HVDGFRFD 138
DG +G + +Y +C +++L L D +R + +Y V GFR D
Sbjct: 138 DGKCKTASGGIESYNDPYQVRDCQLVGLLDLALEKDYVRSMIADYLNKLIDIGVAGFRID 197
Query: 139 LA 140
+
Sbjct: 198 AS 199
>pdb|3T3K|A Chain A, 1.24 A Structure Of Friedreich's Ataxia Frataxin Variant
Q148r
Length = 129
Score = 28.9 bits (63), Expect = 7.2, Method: Composition-based stats.
Identities = 15/58 (25%), Positives = 27/58 (46%), Gaps = 17/58 (29%)
Query: 217 GILATRISGSSDLYRVNKRKPYHSI-----------------NFIIAHDGFTLYDLVS 257
G+L ++ G Y +NKR P I N++ +HDG +L++L++
Sbjct: 49 GVLTVKLGGDLGTYVINKRTPNKQIWLSSPSSGPKRYDWTGKNWVYSHDGVSLHELLA 106
>pdb|3K8K|A Chain A, Crystal Structure Of Susg
pdb|3K8K|B Chain B, Crystal Structure Of Susg
pdb|3K8M|A Chain A, Crystal Structure Of Susg With Acarbose
pdb|3K8M|B Chain B, Crystal Structure Of Susg With Acarbose
Length = 669
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEA 71
+F +V H GI++ LD V NHT A
Sbjct: 108 DFDRLVTEAHNRGIKIYLDYVXNHTGTA 135
>pdb|1KBK|A Chain A, Mechanistic Analyses Of Catalysis In Human Pancreatic
Alpha-amylase: Detailed Kinetic And Structural Studies
Of Mutants Of Three Conserved Carboxylic Acids
Length = 496
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 46/119 (38%), Gaps = 25/119 (21%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNH-TNEADDA----------NPYTTSFRGIDNKVYYMV 92
EF+ MV + G+ + +D V NH A A NP + F + +
Sbjct: 78 EFRNMVTRCNNVGVRIYVDAVINHMCGNAVSAGTSSTCGSYFNPGSRDFPAVPYSGWDFN 137
Query: 93 D-----GTGQLLNYAGCGNTLNCNHPVVMELIL--DSLRHWVVEYH-------VDGFRF 137
D G+G + NY +C +++L L D +R + EY V GFR
Sbjct: 138 DGKCKTGSGDIENYNDATQVRDCRLTGLLDLALEKDYVRSKIAEYMNHLIDIGVAGFRL 196
>pdb|3K8L|A Chain A, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
pdb|3K8L|B Chain B, Crystal Structure Of Susg-D498n Mutant With Maltoheptaose
Length = 669
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 16/28 (57%)
Query: 44 EFKEMVKALHGAGIEVILDVVYNHTNEA 71
+F +V H GI++ LD V NHT A
Sbjct: 108 DFDRLVTEAHNRGIKIYLDYVMNHTGTA 135
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.138 0.445
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,995,628
Number of Sequences: 62578
Number of extensions: 721596
Number of successful extensions: 1823
Number of sequences better than 100.0: 169
Number of HSP's better than 100.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 1583
Number of HSP's gapped (non-prelim): 250
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)