Query 011993
Match_columns 473
No_of_seqs 125 out of 1541
Neff 9.2
Searched_HMMs 46136
Date Fri Mar 29 07:28:46 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011993.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011993hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02100 glgX_debranch glycog 100.0 1.1E-67 2.5E-72 555.0 43.4 456 1-472 204-688 (688)
2 PRK03705 glycogen debranching 100.0 5.3E-67 1.2E-71 545.7 41.0 445 1-473 199-658 (658)
3 PRK14510 putative bifunctional 100.0 2.1E-61 4.6E-66 533.5 37.1 412 1-427 207-648 (1221)
4 COG1523 PulA Type II secretory 100.0 1E-59 2.2E-64 485.1 34.7 446 10-472 233-691 (697)
5 TIGR02403 trehalose_treC alpha 100.0 4.4E-58 9.6E-63 475.4 30.8 387 1-472 47-543 (543)
6 PRK10785 maltodextrin glucosid 100.0 1.4E-58 3E-63 483.8 26.7 342 1-427 199-568 (598)
7 PRK10933 trehalose-6-phosphate 100.0 7.7E-58 1.7E-62 472.7 31.4 390 1-473 53-551 (551)
8 TIGR02104 pulA_typeI pullulana 100.0 1.1E-57 2.3E-62 478.9 32.9 392 1-443 184-601 (605)
9 TIGR02456 treS_nterm trehalose 100.0 8.4E-56 1.8E-60 459.6 32.5 415 1-472 48-538 (539)
10 TIGR02102 pullulan_Gpos pullul 100.0 2.5E-52 5.5E-57 450.4 38.3 415 14-472 526-1004(1111)
11 PRK14706 glycogen branching en 100.0 2.6E-52 5.7E-57 434.8 32.8 404 1-473 188-622 (639)
12 PRK12313 glycogen branching en 100.0 7.9E-52 1.7E-56 437.1 33.0 407 1-473 191-628 (633)
13 PRK12568 glycogen branching en 100.0 4.3E-51 9.3E-56 424.0 33.3 403 1-472 290-728 (730)
14 TIGR01515 branching_enzym alph 100.0 2.1E-51 4.6E-56 430.9 30.0 403 1-471 177-613 (613)
15 PRK05402 glycogen branching en 100.0 1E-50 2.2E-55 433.3 33.1 403 1-472 286-723 (726)
16 PRK09505 malS alpha-amylase; R 100.0 1.2E-51 2.5E-56 430.2 23.2 325 14-416 271-681 (683)
17 TIGR02402 trehalose_TreZ malto 100.0 3.7E-51 8.1E-56 422.2 26.6 347 1-423 131-541 (542)
18 PRK14705 glycogen branching en 100.0 9.2E-50 2E-54 432.9 32.6 405 1-473 786-1223(1224)
19 PRK09441 cytoplasmic alpha-amy 100.0 6.1E-49 1.3E-53 403.4 29.0 363 2-471 43-479 (479)
20 PLN02877 alpha-amylase/limit d 100.0 3.5E-48 7.6E-53 409.4 31.5 419 14-472 438-968 (970)
21 TIGR02103 pullul_strch alpha-1 100.0 3.7E-48 7.9E-53 410.8 29.3 413 14-472 376-896 (898)
22 TIGR03852 sucrose_gtfA sucrose 100.0 1.5E-48 3.3E-53 387.8 19.6 368 1-423 37-467 (470)
23 PLN02960 alpha-amylase 100.0 1.2E-46 2.6E-51 390.8 33.4 413 1-472 437-891 (897)
24 PLN02447 1,4-alpha-glucan-bran 100.0 9.2E-46 2E-50 384.9 32.4 418 1-473 271-731 (758)
25 PRK13840 sucrose phosphorylase 100.0 3.8E-45 8.3E-50 365.7 22.9 372 1-426 40-476 (495)
26 KOG0470 1,4-alpha-glucan branc 100.0 4.9E-43 1.1E-47 351.5 27.4 431 15-469 285-750 (757)
27 PLN03244 alpha-amylase; Provis 100.0 2.5E-42 5.3E-47 351.8 31.6 400 20-472 426-866 (872)
28 PLN00196 alpha-amylase; Provis 100.0 2.2E-42 4.8E-47 344.8 22.9 298 12-417 68-402 (428)
29 PLN02361 alpha-amylase 100.0 6.3E-41 1.4E-45 330.2 26.3 299 12-416 53-377 (401)
30 COG0296 GlgB 1,4-alpha-glucan 100.0 5.8E-41 1.3E-45 340.6 23.3 402 1-471 185-627 (628)
31 PF00128 Alpha-amylase: Alpha 100.0 4.4E-42 9.4E-47 336.4 13.8 256 1-329 24-314 (316)
32 TIGR02455 TreS_stutzeri trehal 100.0 6.8E-40 1.5E-44 328.5 25.8 422 1-473 94-682 (688)
33 COG0366 AmyA Glycosidases [Car 100.0 7.6E-38 1.7E-42 326.7 23.4 351 1-427 49-494 (505)
34 KOG0471 Alpha-amylase [Carbohy 100.0 1.5E-36 3.3E-41 312.6 21.0 407 1-471 60-544 (545)
35 PLN02784 alpha-amylase 100.0 2.6E-34 5.6E-39 297.6 23.8 288 12-414 545-865 (894)
36 TIGR02401 trehalose_TreY malto 100.0 2E-30 4.3E-35 271.6 18.1 129 297-443 643-804 (825)
37 PRK14511 maltooligosyl trehalo 99.9 1.7E-24 3.8E-29 228.0 29.7 128 302-443 704-856 (879)
38 KOG2212 Alpha-amylase [Carbohy 99.9 8.1E-23 1.8E-27 188.1 19.5 345 18-444 79-467 (504)
39 smart00642 Aamy Alpha-amylase 99.6 2.3E-15 4.9E-20 132.0 6.5 59 1-70 39-97 (166)
40 PRK14507 putative bifunctional 99.6 2.8E-14 6.1E-19 160.2 14.9 67 1-80 778-844 (1693)
41 PF14872 GHL5: Hypothetical gl 99.5 1.2E-11 2.6E-16 123.7 22.5 106 14-143 282-393 (811)
42 COG3280 TreY Maltooligosyl tre 99.4 2.2E-12 4.8E-17 131.0 13.7 61 12-80 45-105 (889)
43 TIGR01531 glyc_debranch glycog 99.3 1.5E-10 3.2E-15 126.9 22.0 60 15-81 160-220 (1464)
44 PF11941 DUF3459: Domain of un 99.2 9.4E-11 2E-15 92.0 7.5 89 358-470 1-89 (89)
45 PF02806 Alpha-amylase_C: Alph 98.6 5.2E-08 1.1E-12 77.4 3.9 81 392-473 6-94 (95)
46 PF14871 GHL6: Hypothetical gl 98.4 2.3E-06 5E-11 71.7 9.3 102 17-139 27-132 (132)
47 PF11852 DUF3372: Domain of un 98.4 5.6E-07 1.2E-11 77.4 5.4 115 353-472 41-166 (168)
48 PF02324 Glyco_hydro_70: Glyco 98.1 2.5E-05 5.5E-10 79.9 11.3 280 106-440 144-480 (809)
49 PF14701 hDGE_amylase: glucano 97.9 1.4E-05 3.1E-10 79.1 6.0 59 18-81 53-112 (423)
50 PF10438 Cyc-maltodext_C: Cycl 97.9 5.7E-06 1.2E-10 62.0 2.5 71 393-471 7-77 (78)
51 PF02638 DUF187: Glycosyl hydr 97.9 3.7E-05 7.9E-10 74.7 8.5 94 42-142 69-165 (311)
52 cd06593 GH31_xylosidase_YicI Y 97.8 6.7E-05 1.5E-09 73.2 8.3 95 44-146 67-164 (308)
53 cd06592 GH31_glucosidase_KIAA1 97.7 0.00012 2.6E-09 71.1 8.1 93 43-142 70-166 (303)
54 cd06597 GH31_transferase_CtsY 97.7 0.00013 2.7E-09 72.0 8.0 98 43-143 85-189 (340)
55 KOG3625 Alpha amylase [Carbohy 97.6 0.0029 6.4E-08 67.0 16.4 62 15-81 170-232 (1521)
56 PF08533 Glyco_hydro_42C: Beta 97.6 0.00025 5.3E-09 50.4 5.9 55 398-471 3-57 (58)
57 cd06594 GH31_glucosidase_YihQ 97.5 0.00022 4.7E-09 69.6 7.5 95 43-143 71-168 (317)
58 smart00632 Aamy_C Aamy_C domai 97.5 0.00041 9E-09 53.0 6.8 71 392-470 5-76 (81)
59 PF02065 Melibiase: Melibiase; 97.4 0.00085 1.8E-08 67.0 9.4 94 43-145 104-197 (394)
60 cd06599 GH31_glycosidase_Aec37 97.4 0.00055 1.2E-08 66.9 7.8 93 43-142 73-169 (317)
61 cd06591 GH31_xylosidase_XylS X 97.3 0.00076 1.6E-08 66.0 8.3 93 43-142 66-160 (319)
62 PRK14507 putative bifunctional 97.2 0.0037 8E-08 72.3 12.8 122 307-443 1502-1667(1693)
63 cd06600 GH31_MGAM-like This fa 97.1 0.0016 3.4E-08 63.7 8.0 94 43-141 64-160 (317)
64 PRK10658 putative alpha-glucos 97.0 0.002 4.4E-08 68.9 8.0 94 44-145 326-422 (665)
65 cd06602 GH31_MGAM_SI_GAA This 97.0 0.0027 5.9E-08 62.6 8.1 95 46-142 69-166 (339)
66 PLN02635 disproportionating en 96.8 0.0085 1.9E-07 62.1 10.5 117 43-176 224-371 (538)
67 PRK14508 4-alpha-glucanotransf 96.8 0.053 1.2E-06 56.1 16.2 118 43-176 198-345 (497)
68 cd06604 GH31_glucosidase_II_Ma 96.5 0.007 1.5E-07 59.8 7.5 94 43-142 64-160 (339)
69 COG1649 Uncharacterized protei 96.5 0.0057 1.2E-07 60.8 6.7 100 40-146 112-214 (418)
70 PF01055 Glyco_hydro_31: Glyco 96.5 0.0038 8.2E-08 64.2 5.3 98 42-143 82-182 (441)
71 cd06598 GH31_transferase_CtsZ 96.4 0.011 2.4E-07 57.8 8.0 91 43-141 70-164 (317)
72 COG1501 Alpha-glucosidases, fa 96.4 0.0096 2.1E-07 64.6 7.7 95 43-145 321-419 (772)
73 PF13200 DUF4015: Putative gly 96.3 0.017 3.8E-07 55.7 8.6 89 42-143 60-149 (316)
74 PRK10426 alpha-glucosidase; Pr 96.3 0.011 2.4E-07 63.2 8.0 97 43-146 269-368 (635)
75 COG3280 TreY Maltooligosyl tre 95.9 0.01 2.3E-07 62.0 5.0 98 305-416 712-826 (889)
76 PF13199 Glyco_hydro_66: Glyco 95.7 0.06 1.3E-06 56.2 9.6 114 42-163 169-297 (559)
77 PF02324 Glyco_hydro_70: Glyco 95.7 0.016 3.5E-07 60.0 5.3 46 17-70 625-674 (809)
78 PLN02763 hydrolase, hydrolyzin 95.4 0.048 1E-06 60.2 8.2 92 44-141 242-336 (978)
79 cd06542 GH18_EndoS-like Endo-b 95.3 0.073 1.6E-06 50.3 8.2 86 18-139 27-112 (255)
80 PRK14510 putative bifunctional 95.3 0.28 6.1E-06 56.5 14.0 124 43-176 932-1076(1221)
81 cd06603 GH31_GANC_GANAB_alpha 95.3 0.049 1.1E-06 53.8 7.1 94 43-141 64-162 (339)
82 PRK11052 malQ 4-alpha-glucanot 95.1 0.099 2.1E-06 56.2 9.3 125 42-176 354-499 (695)
83 cd06595 GH31_xylosidase_XylS-l 95.0 0.053 1.2E-06 52.3 6.3 85 43-140 74-158 (292)
84 TIGR00217 malQ 4-alpha-glucano 94.9 0.18 3.8E-06 52.5 10.3 121 43-176 212-360 (513)
85 cd02875 GH18_chitobiase Chitob 94.2 0.12 2.5E-06 51.5 6.7 54 46-139 67-120 (358)
86 COG3589 Uncharacterized conser 94.1 0.063 1.4E-06 51.2 4.3 28 42-69 48-75 (360)
87 cd02871 GH18_chitinase_D-like 93.7 0.3 6.4E-06 47.7 8.5 60 42-139 59-118 (312)
88 cd06601 GH31_lyase_GLase GLase 93.1 0.3 6.5E-06 48.0 7.3 70 43-141 64-133 (332)
89 TIGR01370 cysRS possible cyste 92.9 0.27 5.8E-06 47.6 6.5 134 23-173 66-210 (315)
90 COG1640 MalQ 4-alpha-glucanotr 92.9 1 2.2E-05 46.5 10.9 123 43-176 210-352 (520)
91 cd06545 GH18_3CO4_chitinase Th 92.8 0.4 8.7E-06 45.2 7.7 83 42-164 45-127 (253)
92 PF05913 DUF871: Bacterial pro 92.5 0.17 3.8E-06 49.9 4.7 30 40-69 44-73 (357)
93 KOG1065 Maltase glucoamylase a 92.3 0.45 9.7E-06 51.1 7.8 92 45-141 353-448 (805)
94 PF02446 Glyco_hydro_77: 4-alp 92.0 0.27 5.8E-06 51.2 5.8 122 42-176 191-334 (496)
95 cd06570 GH20_chitobiase-like_1 89.3 0.89 1.9E-05 44.2 6.2 78 42-130 67-146 (311)
96 cd02742 GH20_hexosaminidase Be 87.5 0.93 2E-05 44.0 5.1 76 42-130 71-147 (303)
97 cd06568 GH20_SpHex_like A subg 86.1 2.2 4.7E-05 42.0 6.9 76 42-128 74-151 (329)
98 cd06563 GH20_chitobiase-like T 85.8 2.4 5.3E-05 42.2 7.2 78 42-130 85-164 (357)
99 cd06564 GH20_DspB_LnbB-like Gl 85.2 1.5 3.3E-05 43.0 5.4 74 42-131 81-155 (326)
100 cd06589 GH31 The enzymes of gl 85.2 1.7 3.6E-05 41.3 5.4 53 43-143 66-118 (265)
101 cd02874 GH18_CFLE_spore_hydrol 84.3 2.1 4.5E-05 41.8 5.8 86 45-164 47-132 (313)
102 PF00728 Glyco_hydro_20: Glyco 83.7 2.4 5.1E-05 42.0 6.1 77 43-131 73-156 (351)
103 cd06562 GH20_HexA_HexB-like Be 83.6 2.6 5.7E-05 41.7 6.2 78 42-131 69-149 (348)
104 COG2342 Predicted extracellula 83.5 7.3 0.00016 36.6 8.5 104 26-143 48-151 (300)
105 cd00598 GH18_chitinase-like Th 83.5 5.7 0.00012 35.9 8.1 86 43-164 49-136 (210)
106 PF02449 Glyco_hydro_42: Beta- 82.5 3.4 7.5E-05 41.4 6.7 86 42-138 46-135 (374)
107 cd02932 OYE_YqiM_FMN Old yello 82.3 13 0.00029 36.5 10.7 122 16-141 46-177 (336)
108 PF00150 Cellulase: Cellulase 82.2 1.5 3.2E-05 41.7 3.8 24 40-63 59-82 (281)
109 cd02929 TMADH_HD_FMN Trimethyl 81.5 15 0.00034 36.6 10.8 29 40-70 80-108 (370)
110 PF00724 Oxidored_FMN: NADH:fl 81.3 5.7 0.00012 39.3 7.6 52 17-70 50-105 (341)
111 PLN02411 12-oxophytodienoate r 81.2 13 0.00029 37.4 10.3 51 18-70 58-112 (391)
112 PF01120 Alpha_L_fucos: Alpha- 81.0 9.1 0.0002 37.9 9.0 92 20-141 124-216 (346)
113 cd04747 OYE_like_5_FMN Old yel 81.0 17 0.00037 36.2 10.8 29 40-70 75-103 (361)
114 PF07745 Glyco_hydro_53: Glyco 80.3 5 0.00011 39.3 6.7 26 42-70 57-82 (332)
115 cd02877 GH18_hevamine_XipI_cla 80.1 6.4 0.00014 37.7 7.2 21 43-63 59-79 (280)
116 KOG2499 Beta-N-acetylhexosamin 78.3 9.5 0.00021 38.7 7.8 28 43-70 250-278 (542)
117 cd04733 OYE_like_2_FMN Old yel 77.8 19 0.00041 35.5 10.1 29 40-70 79-107 (338)
118 cd02803 OYE_like_FMN_family Ol 77.6 11 0.00024 36.8 8.4 114 15-141 45-164 (327)
119 cd02931 ER_like_FMN Enoate red 77.4 22 0.00048 35.7 10.5 28 41-70 81-109 (382)
120 PRK10605 N-ethylmaleimide redu 77.3 26 0.00056 34.9 10.9 52 17-70 49-104 (362)
121 cd06547 GH85_ENGase Endo-beta- 76.7 3.5 7.5E-05 40.7 4.4 65 47-142 50-114 (339)
122 cd06546 GH18_CTS3_chitinase GH 74.4 18 0.00039 34.1 8.5 81 43-164 59-139 (256)
123 cd06569 GH20_Sm-chitobiase-lik 72.3 4.6 9.9E-05 41.4 4.2 114 14-128 63-191 (445)
124 COG1902 NemA NADH:flavin oxido 71.3 33 0.00071 34.2 9.8 91 42-143 82-174 (363)
125 PF09154 DUF1939: Domain of un 71.0 3.2 6.9E-05 29.1 1.9 56 410-470 1-56 (57)
126 PRK08255 salicylyl-CoA 5-hydro 70.7 40 0.00088 37.3 11.4 98 40-141 472-574 (765)
127 PRK13523 NADPH dehydrogenase N 70.1 37 0.00079 33.5 9.9 110 15-141 49-165 (337)
128 PLN02950 4-alpha-glucanotransf 70.0 8.6 0.00019 43.1 5.9 24 43-66 461-484 (909)
129 COG3867 Arabinogalactan endo-1 69.9 9.8 0.00021 36.1 5.3 25 43-70 104-128 (403)
130 PLN02808 alpha-galactosidase 69.4 17 0.00037 36.4 7.3 73 393-473 306-384 (386)
131 cd04734 OYE_like_3_FMN Old yel 69.3 46 0.001 32.9 10.5 114 15-142 45-165 (343)
132 PLN03236 4-alpha-glucanotransf 69.1 11 0.00023 41.1 6.2 25 43-67 274-298 (745)
133 PF09260 DUF1966: Domain of un 68.7 7 0.00015 30.3 3.6 72 393-471 4-80 (91)
134 cd02879 GH18_plant_chitinase_c 67.9 14 0.00031 35.7 6.4 28 111-138 88-115 (299)
135 cd02933 OYE_like_FMN Old yello 67.2 59 0.0013 32.1 10.6 51 18-70 48-102 (338)
136 cd04735 OYE_like_4_FMN Old yel 66.1 35 0.00075 33.9 8.9 113 17-141 48-167 (353)
137 COG1242 Predicted Fe-S oxidore 63.2 25 0.00054 33.2 6.5 57 42-143 167-223 (312)
138 cd02930 DCR_FMN 2,4-dienoyl-Co 63.0 59 0.0013 32.3 9.9 84 40-141 74-160 (353)
139 PF01212 Beta_elim_lyase: Beta 62.4 7 0.00015 37.6 3.1 23 41-63 143-165 (290)
140 cd06565 GH20_GcnA-like Glycosy 62.0 20 0.00044 34.7 6.2 72 42-131 59-131 (301)
141 PRK15452 putative protease; Pr 61.0 36 0.00078 34.9 8.0 20 42-61 45-64 (443)
142 COG3345 GalA Alpha-galactosida 60.5 11 0.00023 39.1 3.9 104 21-143 343-446 (687)
143 PF14701 hDGE_amylase: glucano 59.8 15 0.00033 37.1 4.9 37 105-143 363-404 (423)
144 COG3469 Chitinase [Carbohydrat 57.9 94 0.002 29.0 9.1 58 42-138 84-141 (332)
145 PF15640 Tox-MPTase4: Metallop 57.8 14 0.00031 30.1 3.5 23 40-62 19-41 (132)
146 PLN02229 alpha-galactosidase 57.5 40 0.00087 34.2 7.5 71 395-472 341-417 (427)
147 cd06543 GH18_PF-ChiA-like PF-C 55.9 48 0.001 32.0 7.5 59 43-139 54-112 (294)
148 PF07555 NAGidase: beta-N-acet 54.9 43 0.00093 32.5 7.0 58 40-137 53-110 (306)
149 TIGR03356 BGL beta-galactosida 51.5 37 0.0008 34.7 6.3 60 40-131 91-150 (427)
150 PRK13397 3-deoxy-7-phosphohept 51.1 22 0.00047 33.3 4.1 21 43-63 66-86 (250)
151 cd06548 GH18_chitinase The GH1 50.9 19 0.00042 35.2 4.1 28 111-138 105-132 (322)
152 PF14509 GH97_C: Glycosyl-hydr 50.3 63 0.0014 25.7 6.2 80 393-472 12-101 (103)
153 PF09083 DUF1923: Domain of un 49.6 82 0.0018 21.5 5.6 55 394-470 8-62 (64)
154 cd02876 GH18_SI-CLP Stabilin-1 49.3 20 0.00044 34.9 4.0 29 111-139 88-116 (318)
155 smart00812 Alpha_L_fucos Alpha 48.8 22 0.00048 35.7 4.2 85 21-140 115-202 (384)
156 PRK14582 pgaB outer membrane N 48.4 1.2E+02 0.0026 32.9 9.7 38 106-143 433-470 (671)
157 cd06549 GH18_trifunctional GH1 48.3 21 0.00045 34.5 3.8 51 110-164 83-133 (298)
158 PF01791 DeoC: DeoC/LacD famil 47.3 16 0.00035 33.9 2.8 30 40-69 109-138 (236)
159 smart00636 Glyco_18 Glycosyl h 47.3 23 0.0005 34.7 4.0 52 111-164 87-138 (334)
160 COG3934 Endo-beta-mannanase [C 46.9 36 0.00078 34.7 5.1 29 42-70 66-96 (587)
161 cd02872 GH18_chitolectin_chito 46.7 22 0.00048 35.3 3.8 28 111-138 92-119 (362)
162 COG0041 PurE Phosphoribosylcar 43.5 26 0.00056 29.9 3.0 21 43-63 44-64 (162)
163 PRK09852 cryptic 6-phospho-bet 43.5 69 0.0015 33.2 6.9 41 26-69 96-136 (474)
164 COG0520 csdA Selenocysteine ly 43.1 22 0.00048 36.1 3.2 33 24-64 168-200 (405)
165 PF00704 Glyco_hydro_18: Glyco 43.1 28 0.00061 34.0 3.9 52 112-163 96-147 (343)
166 TIGR00666 PBP4 D-alanyl-D-alan 42.2 88 0.0019 30.9 7.2 34 27-69 63-97 (345)
167 cd06544 GH18_narbonin Narbonin 39.9 55 0.0012 30.8 5.1 25 115-139 97-121 (253)
168 cd02878 GH18_zymocin_alpha Zym 39.8 32 0.0007 34.0 3.7 28 112-139 88-115 (345)
169 PF12683 DUF3798: Protein of u 38.5 68 0.0015 30.2 5.3 22 113-134 181-202 (275)
170 COG1891 Uncharacterized protei 38.5 15 0.00032 32.0 0.9 24 42-65 166-189 (235)
171 COG2730 BglC Endoglucanase [Ca 38.4 82 0.0018 32.0 6.5 24 44-70 117-140 (407)
172 PRK15014 6-phospho-beta-glucos 37.7 1.1E+02 0.0025 31.7 7.4 74 26-131 94-167 (477)
173 PRK05967 cystathionine beta-ly 37.6 40 0.00086 34.1 4.0 27 41-67 164-190 (395)
174 PF12690 BsuPI: Intracellular 37.1 1.1E+02 0.0024 23.1 5.5 61 409-472 4-66 (82)
175 cd02873 GH18_IDGF The IDGF's ( 37.0 39 0.00083 34.4 3.8 28 111-138 101-128 (413)
176 PRK05692 hydroxymethylglutaryl 36.7 1.2E+02 0.0027 29.0 7.0 77 41-163 118-195 (287)
177 PF13204 DUF4038: Protein of u 36.6 44 0.00095 32.1 4.0 34 22-67 77-110 (289)
178 COG1105 FruK Fructose-1-phosph 36.5 45 0.00098 32.3 4.0 22 42-63 145-166 (310)
179 COG1306 Uncharacterized conser 36.4 1.4E+02 0.0031 28.5 7.0 90 42-143 123-221 (400)
180 COG0134 TrpC Indole-3-glycerol 35.2 43 0.00094 31.4 3.5 21 43-63 143-163 (254)
181 cd07940 DRE_TIM_IPMS 2-isoprop 34.7 1.8E+02 0.0038 27.5 7.8 71 41-163 112-183 (268)
182 TIGR02127 pyrF_sub2 orotidine 34.3 47 0.001 31.4 3.7 29 41-69 71-99 (261)
183 PLN02692 alpha-galactosidase 34.2 5.2E+02 0.011 26.3 21.3 73 393-472 330-408 (412)
184 PF01301 Glyco_hydro_35: Glyco 34.1 35 0.00076 33.3 2.9 27 43-69 63-89 (319)
185 TIGR01361 DAHP_synth_Bsub phos 33.1 51 0.0011 31.2 3.7 21 43-63 76-96 (260)
186 PRK00125 pyrF orotidine 5'-pho 33.0 47 0.001 31.7 3.5 29 41-69 71-99 (278)
187 PF12681 Glyoxalase_2: Glyoxal 32.7 61 0.0013 25.0 3.7 23 43-65 65-87 (108)
188 PRK09028 cystathionine beta-ly 32.5 54 0.0012 33.1 4.0 25 42-66 162-186 (394)
189 cd07938 DRE_TIM_HMGL 3-hydroxy 32.1 1.7E+02 0.0037 27.8 7.2 77 41-163 112-189 (274)
190 cd00609 AAT_like Aspartate ami 32.0 50 0.0011 31.9 3.7 31 40-70 149-179 (350)
191 PRK05939 hypothetical protein; 31.8 63 0.0014 32.7 4.4 24 42-65 147-170 (397)
192 PRK08673 3-deoxy-7-phosphohept 31.4 59 0.0013 32.0 3.9 21 43-63 144-164 (335)
193 cd07944 DRE_TIM_HOA_like 4-hyd 31.0 2.3E+02 0.0051 26.7 7.9 72 40-163 106-178 (266)
194 KOG0259 Tyrosine aminotransfer 31.0 44 0.00094 33.2 2.9 29 43-71 219-247 (447)
195 COG2876 AroA 3-deoxy-D-arabino 31.0 83 0.0018 29.6 4.5 21 43-63 96-116 (286)
196 PRK00278 trpC indole-3-glycero 30.8 56 0.0012 30.9 3.6 21 43-63 147-167 (260)
197 cd00615 Orn_deC_like Ornithine 30.4 36 0.00079 32.6 2.3 23 42-64 169-191 (294)
198 COG1103 Archaea-specific pyrid 30.1 51 0.0011 31.2 3.0 32 24-63 162-193 (382)
199 TIGR01140 L_thr_O3P_dcar L-thr 30.1 60 0.0013 31.7 3.9 30 40-69 142-171 (330)
200 PRK13396 3-deoxy-7-phosphohept 30.0 65 0.0014 31.9 4.0 21 43-63 152-172 (352)
201 cd04795 SIS SIS domain. SIS (S 29.8 72 0.0016 23.7 3.5 19 43-61 61-79 (87)
202 PRK13398 3-deoxy-7-phosphohept 29.6 66 0.0014 30.5 3.9 21 43-63 78-98 (266)
203 PF03711 OKR_DC_1_C: Orn/Lys/A 29.4 69 0.0015 27.0 3.5 37 312-373 87-123 (136)
204 cd00958 DhnA Class I fructose- 29.2 58 0.0012 30.1 3.4 26 40-65 106-131 (235)
205 COG1874 LacA Beta-galactosidas 29.2 1.6E+02 0.0034 32.0 6.9 59 393-472 614-672 (673)
206 PF14488 DUF4434: Domain of un 28.9 57 0.0012 28.5 3.1 26 42-67 64-89 (166)
207 KOG0053 Cystathionine beta-lya 28.8 48 0.001 33.3 2.8 27 41-67 177-203 (409)
208 PRK05093 argD bifunctional N-s 28.2 83 0.0018 31.7 4.6 30 41-70 203-232 (403)
209 PF04914 DltD_C: DltD C-termin 27.9 89 0.0019 26.1 3.9 56 42-132 35-90 (130)
210 cd05014 SIS_Kpsf KpsF-like pro 27.7 75 0.0016 25.8 3.5 19 43-61 61-79 (128)
211 PRK07050 cystathionine beta-ly 27.6 72 0.0016 32.2 4.0 26 42-67 166-191 (394)
212 cd06502 TA_like Low-specificit 27.5 55 0.0012 31.8 3.1 24 41-64 144-167 (338)
213 COG0269 SgbH 3-hexulose-6-phos 27.5 91 0.002 28.4 4.1 107 40-178 90-196 (217)
214 TIGR03246 arg_catab_astC succi 27.4 90 0.002 31.4 4.7 30 41-70 198-227 (397)
215 cd08577 PI-PLCc_GDPD_SF_unchar 27.0 70 0.0015 29.6 3.4 22 40-61 182-203 (228)
216 PRK13237 tyrosine phenol-lyase 26.9 66 0.0014 33.1 3.5 23 42-64 197-219 (460)
217 PLN03231 putative alpha-galact 26.8 2.3E+02 0.005 28.2 7.1 33 107-140 153-185 (357)
218 cd07939 DRE_TIM_NifV Streptomy 26.8 3E+02 0.0064 25.8 7.8 40 117-163 139-179 (259)
219 PRK01278 argD acetylornithine 26.7 82 0.0018 31.5 4.2 30 41-70 194-223 (389)
220 KOG2584 Dihydroorotase and rel 26.5 1.1E+02 0.0024 31.0 4.7 87 38-141 81-169 (522)
221 TIGR01814 kynureninase kynuren 26.2 55 0.0012 33.1 2.9 31 26-64 179-209 (406)
222 PF00218 IGPS: Indole-3-glycer 26.2 71 0.0015 30.0 3.4 25 43-70 145-169 (254)
223 PRK12381 bifunctional succinyl 26.2 96 0.0021 31.3 4.6 43 27-70 189-231 (406)
224 TIGR01324 cysta_beta_ly_B cyst 26.1 91 0.002 31.3 4.4 26 42-67 151-176 (377)
225 TIGR02336 1,3-beta-galactosyl- 26.0 1.8E+02 0.0039 31.3 6.5 51 392-470 668-718 (719)
226 cd00617 Tnase_like Tryptophana 26.0 71 0.0015 32.7 3.6 24 41-64 171-194 (431)
227 PTZ00445 p36-lilke protein; Pr 25.9 78 0.0017 28.9 3.4 19 43-61 78-96 (219)
228 COG0160 GabT 4-aminobutyrate a 25.9 1.1E+02 0.0023 31.5 4.8 49 26-78 227-275 (447)
229 COG0626 MetC Cystathionine bet 25.9 60 0.0013 32.7 2.9 33 35-67 158-190 (396)
230 PRK12595 bifunctional 3-deoxy- 25.4 93 0.002 31.0 4.2 21 43-63 169-189 (360)
231 cd01494 AAT_I Aspartate aminot 25.3 59 0.0013 27.4 2.6 28 43-70 109-136 (170)
232 cd06232 Peptidase_M14-like_5 P 25.3 2.7E+02 0.0059 25.8 6.7 51 42-98 119-170 (240)
233 PLN02460 indole-3-glycerol-pho 24.9 80 0.0017 31.0 3.5 25 43-70 217-241 (338)
234 cd00614 CGS_like CGS_like: Cys 24.9 64 0.0014 32.1 3.0 24 42-65 141-164 (369)
235 PF01276 OKR_DC_1: Orn/Lys/Arg 24.7 44 0.00094 34.0 1.7 23 42-64 183-205 (417)
236 PRK09331 Sep-tRNA:Cys-tRNA syn 24.7 74 0.0016 31.9 3.5 32 27-66 167-198 (387)
237 TIGR02617 tnaA_trp_ase tryptop 24.3 77 0.0017 32.5 3.4 24 40-63 201-224 (467)
238 PRK13957 indole-3-glycerol-pho 24.3 79 0.0017 29.6 3.2 25 43-70 138-162 (247)
239 PRK05968 hypothetical protein; 24.2 95 0.0021 31.2 4.2 24 42-65 163-186 (389)
240 cd07945 DRE_TIM_CMS Leptospira 24.2 2.8E+02 0.0061 26.5 7.1 75 40-163 112-187 (280)
241 PRK11113 D-alanyl-D-alanine ca 24.0 78 0.0017 32.9 3.5 33 28-69 108-141 (477)
242 TIGR02618 tyr_phenol_ly tyrosi 23.9 83 0.0018 32.3 3.6 23 42-64 190-212 (450)
243 PRK07998 gatY putative fructos 23.9 6.5E+02 0.014 24.1 9.5 82 42-164 114-197 (283)
244 PF01053 Cys_Met_Meta_PP: Cys/ 23.9 81 0.0017 31.8 3.5 25 41-65 155-180 (386)
245 PF00266 Aminotran_5: Aminotra 23.8 50 0.0011 32.8 2.1 37 20-64 141-177 (371)
246 PLN02651 cysteine desulfurase 23.8 71 0.0015 31.6 3.1 32 26-65 146-177 (364)
247 cd07937 DRE_TIM_PC_TC_5S Pyruv 23.8 3.2E+02 0.007 25.9 7.5 40 117-163 149-189 (275)
248 PLN02509 cystathionine beta-ly 23.7 1.1E+02 0.0023 31.8 4.4 24 42-65 233-256 (464)
249 COG1441 MenC O-succinylbenzoat 23.7 81 0.0017 28.9 3.0 22 42-63 243-264 (321)
250 TIGR02539 SepCysS Sep-tRNA:Cys 23.5 75 0.0016 31.6 3.2 33 26-66 154-186 (370)
251 PRK08960 hypothetical protein; 23.4 1E+02 0.0023 30.7 4.3 35 36-70 178-212 (387)
252 cd05017 SIS_PGI_PMI_1 The memb 23.2 1.1E+02 0.0023 24.7 3.6 19 43-61 57-75 (119)
253 PLN00145 tyrosine/nicotianamin 23.2 1E+02 0.0022 31.5 4.2 32 39-70 206-237 (430)
254 smart00518 AP2Ec AP endonuclea 23.1 3.3E+02 0.007 25.5 7.4 41 18-61 23-63 (273)
255 PF13580 SIS_2: SIS domain; PD 23.0 93 0.002 26.0 3.2 19 43-61 117-135 (138)
256 PF12905 Glyco_hydro_101: Endo 22.8 1E+02 0.0022 31.0 3.7 47 22-79 82-128 (425)
257 PF00215 OMPdecase: Orotidine 22.7 2.2E+02 0.0049 26.0 6.0 40 21-69 85-125 (226)
258 COG0436 Aspartate/tyrosine/aro 22.6 1.2E+02 0.0026 30.6 4.5 35 38-72 178-212 (393)
259 PRK07269 cystathionine gamma-s 22.5 73 0.0016 31.7 2.9 24 42-65 152-175 (364)
260 TIGR01212 radical SAM protein, 22.3 2.8E+02 0.0061 26.7 6.9 26 42-67 162-187 (302)
261 PF01408 GFO_IDH_MocA: Oxidore 22.3 86 0.0019 25.0 2.9 21 42-62 99-119 (120)
262 PRK07777 aminotransferase; Val 22.1 1.8E+02 0.0039 28.9 5.7 30 41-70 177-206 (387)
263 PRK09589 celA 6-phospho-beta-g 21.9 2.8E+02 0.006 28.9 7.0 41 26-69 92-132 (476)
264 COG0826 Collagenase and relate 21.9 91 0.002 30.9 3.3 22 42-63 48-69 (347)
265 cd06454 KBL_like KBL_like; thi 21.8 78 0.0017 30.8 3.0 24 42-65 148-171 (349)
266 PRK08247 cystathionine gamma-s 21.7 1.1E+02 0.0025 30.3 4.1 24 42-65 152-175 (366)
267 TIGR01265 tyr_nico_aTase tyros 21.7 1.2E+02 0.0026 30.5 4.4 31 40-70 186-216 (403)
268 PRK07568 aspartate aminotransf 21.6 1.1E+02 0.0024 30.6 4.0 31 40-70 179-209 (397)
269 PLN02746 hydroxymethylglutaryl 21.6 3.3E+02 0.0072 26.9 7.2 78 40-163 159-237 (347)
270 PF07071 DUF1341: Protein of u 21.5 1.1E+02 0.0024 27.5 3.4 22 38-59 159-180 (218)
271 KOG0257 Kynurenine aminotransf 21.4 92 0.002 31.3 3.2 41 38-78 187-227 (420)
272 COG4874 Uncharacterized protei 21.4 4.2E+02 0.0091 24.6 7.0 68 25-102 34-106 (318)
273 cd05013 SIS_RpiR RpiR-like pro 21.3 1.2E+02 0.0025 24.7 3.6 19 43-61 74-92 (139)
274 cd06452 SepCysS Sep-tRNA:Cys-t 21.3 86 0.0019 30.9 3.1 25 42-66 155-179 (361)
275 PRK09082 methionine aminotrans 21.2 1.7E+02 0.0037 29.1 5.3 29 42-70 182-210 (386)
276 PRK08195 4-hyroxy-2-oxovalerat 21.2 4.3E+02 0.0092 26.0 7.9 40 117-163 144-184 (337)
277 PLN02721 threonine aldolase 21.2 1.2E+02 0.0026 29.6 4.1 25 41-65 156-180 (353)
278 COG1168 MalY Bifunctional PLP- 21.1 88 0.0019 31.1 2.9 25 41-65 176-200 (388)
279 TIGR00288 conserved hypothetic 21.0 1.1E+02 0.0024 26.5 3.3 22 40-61 113-134 (160)
280 PF03644 Glyco_hydro_85: Glyco 20.9 63 0.0014 31.4 2.0 21 47-67 46-66 (311)
281 PRK05764 aspartate aminotransf 20.6 1.2E+02 0.0025 30.3 4.0 30 40-69 181-210 (393)
282 PRK13238 tnaA tryptophanase/L- 20.6 1E+02 0.0023 31.8 3.6 22 42-63 197-218 (460)
283 COG2200 Rtn c-di-GMP phosphodi 20.5 86 0.0019 29.5 2.8 46 22-67 172-217 (256)
284 PRK07324 transaminase; Validat 20.5 1.4E+02 0.003 29.7 4.5 31 40-70 170-200 (373)
285 PF09673 TrbC_Ftype: Type-F co 20.5 1.2E+02 0.0027 24.4 3.3 26 42-67 10-35 (113)
286 PLN00175 aminotransferase fami 20.2 1.3E+02 0.0029 30.4 4.3 31 40-70 204-234 (413)
287 cd05008 SIS_GlmS_GlmD_1 SIS (S 20.2 1.3E+02 0.0027 24.3 3.5 19 43-61 60-78 (126)
288 PF00202 Aminotran_3: Aminotra 20.2 1.3E+02 0.0029 29.5 4.2 35 41-78 196-230 (339)
289 PRK08175 aminotransferase; Val 20.2 1.2E+02 0.0026 30.3 4.0 31 40-70 181-211 (395)
290 TIGR01329 cysta_beta_ly_E cyst 20.1 89 0.0019 31.3 3.0 24 42-65 147-170 (378)
291 PF14542 Acetyltransf_CG: GCN5 20.0 53 0.0012 24.5 1.0 37 21-61 24-60 (78)
No 1
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=100.00 E-value=1.1e-67 Score=554.99 Aligned_cols=456 Identities=49% Similarity=0.834 Sum_probs=379.8
Q ss_pred CCccccCCCC----CCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCC
Q 011993 1 MEFQRRRNPR----DHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76 (473)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~ 76 (473)
||.+..+... .+..+||||+++|||+|||+||+.+ +++|||+||++||++||+||||+|+|||+......+
T Consensus 204 ~Pi~~~~~~~~~~~~~~~~ywGYd~~~y~a~d~~y~~~g-----~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~ 278 (688)
T TIGR02100 204 LPVHAFIDDRHLLEKGLRNYWGYNTLGFFAPEPRYLASG-----QVAEFKTMVRALHDAGIEVILDVVYNHTAEGNELGP 278 (688)
T ss_pred CCcccCCccccccccCCCCccCcCcccccccChhhcCCC-----CHHHHHHHHHHHHHCCCEEEEEECcCCccCcCCCCC
Confidence 6777765532 2345789999999999999996521 279999999999999999999999999998332223
Q ss_pred ccccccCCCCccceeecCC--CCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCC
Q 011993 77 YTTSFRGIDNKVYYMVDGT--GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNA 154 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~ 154 (473)
.. .+.+.++..||...++ +.+.++++|+++||+++|+|+++|++++++|++++||||||+|+|..|..+.++ +...
T Consensus 279 ~~-~~~~~d~~~yy~~~~~~~~~~~~~~g~gn~ln~~~p~vr~~i~d~l~~W~~e~gIDGfR~D~a~~l~~~~~~-~~~~ 356 (688)
T TIGR02100 279 TL-SFRGIDNASYYRLQPDDKRYYINDTGTGNTLNLSHPRVLQMVMDSLRYWVTEMHVDGFRFDLATTLGRELYG-FDML 356 (688)
T ss_pred cc-cccCCCCCcceEecCCCCceecCCCCccccccCCCHHHHHHHHHHHHHHHHHcCCcEEEEechhhhccccCC-Cccc
Confidence 22 4556667788877554 677888999999999999999999999999999999999999999999876533 2335
Q ss_pred HHHHHHHHhccccCCceEEecCCCCc-cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCccccccc
Q 011993 155 PPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVN 233 (473)
Q Consensus 155 ~~~~~~~~~~~~~~~~~li~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 233 (473)
.++++++.++...|++++|||.|+.+ ..+..+.|+. .++.||+.|++.++.|+.|..+....++..|.++..++...
T Consensus 357 ~~~~~~i~~d~~~~~~~ligE~W~~~~~~~~~~~~~~--~~~~~Nd~frd~ir~f~~g~~~~~~~~~~~l~gs~~~~~~~ 434 (688)
T TIGR02100 357 SGFFTAIRQDPVLAQVKLIAEPWDIGPGGYQVGNFPP--GWAEWNDRYRDDMRRFWRGDAGMIGELANRLTGSSDLFEHN 434 (688)
T ss_pred HHHHHHHHhCcccCCeEEEEeeecCCCCcccccCCCC--ceEEecHHHHHHHHHHHcCCCCcHHHHHHHHhCCHhhcccc
Confidence 67899999887889999999999876 5566666653 46899999999999999999988999999999988888766
Q ss_pred CCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcC
Q 011993 234 KRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQG 313 (473)
Q Consensus 234 ~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG 313 (473)
.+.|..++||+++||+.++.+++.+..+|+.++|+.+.+|.+.++||||+..|....+.....+.+++|++++++|++||
T Consensus 435 ~~~~~~~iNyv~~HD~~tl~D~~~~~~khn~~nge~n~dg~~~N~S~n~g~eG~~~~~~~~~~r~~~~r~~~a~l~~s~G 514 (688)
T TIGR02100 435 GRRPWASINFVTAHDGFTLRDLVSYNEKHNEANGENNRDGHNDNYSWNCGVEGPTDDPAINALRRRQQRNLLATLLLSQG 514 (688)
T ss_pred CCCcCEEEEEEeCCCCchHHHHHHhhccchhhccccccccccccccccccccCCCCCHHHHHHHHHHHHHHHHHHHHcCC
Confidence 66788999999999999999999999999999999999999999999999999888877777888899999999999999
Q ss_pred ceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCC-------Ccceee
Q 011993 314 TPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI-------NDVTWH 386 (473)
Q Consensus 314 ~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~-------~~~~~~ 386 (473)
+||||||||+|+++.++.++|++++.++.|+|+.... ..++++|||+||+|||+||+|+.+.+... ..+.|.
T Consensus 515 iP~i~~GdE~g~t~~G~~n~y~~~~~~~~~dW~~~~~-~~~l~~~~k~Li~lRk~~~~l~~~~~~~~~~~~~~~~~v~~~ 593 (688)
T TIGR02100 515 TPMLLAGDEFGRTQQGNNNAYCQDNEIGWVDWSLDEG-DDELLAFTKKLIALRKAHPVLRRERFFDGRNEADGLKDVTWL 593 (688)
T ss_pred CceeeecHhhccCCCCCCCCccCCCcccccCcccccc-cHHHHHHHHHHHHHHHhCchhcccccccCCcccCCCCceEEe
Confidence 9999999999999999999999999999999996543 45899999999999999999999987643 346774
Q ss_pred c--------cccCCCCCcEEEEEEecCC-------CCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCC
Q 011993 387 E--------DNWDNYDSKFLAFTLHDNN-------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE 451 (473)
Q Consensus 387 ~--------~~~~~~~~~v~a~~R~~~~-------~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
. ..|......+++|...... .+.++|++|.+.+.+.+.||... ..|..++++........
T Consensus 594 ~~~G~~~~~~~w~~~~~~~l~~~l~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~~~--~~w~~~~dt~~~~~~~~--- 668 (688)
T TIGR02100 594 NADGEPMTEEDWENPETRLLCMVLSDMDPGGDPGADDSLLLLLNAGPEPVPFKLPGGG--GRWELVLDTADEEAPGI--- 668 (688)
T ss_pred CCCCCcCChhhcCCCCCCEEEEEEeCCccCCCCCCCCeEEEEECCCCCCeEEECCCCC--CcEEEEecCCCCCCccc---
Confidence 2 3463334689999987532 14699999999999999999742 68999999964332211
Q ss_pred CCCCCCCeEEEcCCeEEEEEe
Q 011993 452 GAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 452 ~~~~~~~~i~l~p~~~~vl~~ 472 (473)
....+..+.|+|++++||..
T Consensus 669 -~~~~~~~~~v~~~s~~vl~~ 688 (688)
T TIGR02100 669 -HLDAGQEAELPARSVLLLRR 688 (688)
T ss_pred -cccCCCEEEEcCCEEEEEeC
Confidence 12235689999999999863
No 2
>PRK03705 glycogen debranching enzyme; Provisional
Probab=100.00 E-value=5.3e-67 Score=545.69 Aligned_cols=445 Identities=40% Similarity=0.663 Sum_probs=376.0
Q ss_pred CCccccCCCC----CCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCC
Q 011993 1 MEFQRRRNPR----DHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP 76 (473)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~ 76 (473)
||.+.+++.. ....+||||+++|||+|||+|||++. .+++|||+||++||++||+||||+|+|||+..+..++
T Consensus 199 ~Pv~~~~~~~~~~~~g~~~ywGYd~~~yfa~d~~ygt~~~---~~~~efk~LV~~~H~~GI~VIlDvV~NHt~~~~~~~~ 275 (658)
T PRK03705 199 LPVAQFASEPRLQRMGLSNYWGYNPLAMFALDPAYASGPE---TALDEFRDAVKALHKAGIEVILDVVFNHSAELDLDGP 275 (658)
T ss_pred cCcccCCCcccccccccccccCcccccccccccccCCCCc---chHHHHHHHHHHHHHCCCEEEEEEcccCccCcCCCCc
Confidence 6888776532 23468999999999999999999532 4678999999999999999999999999997555677
Q ss_pred ccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHH
Q 011993 77 YTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPP 156 (473)
Q Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~ 156 (473)
++ .+.+.+++.||...+++.+.++.+|+++||+++|+|+++|++++++|+++|||||||+|+|.+|.++. +.+. ..+
T Consensus 276 ~~-~~~~~d~~~yy~~~~~g~~~~~~g~g~~ln~~~p~Vr~~iid~l~~W~~e~gVDGFRfD~a~~l~~~~-~~~~-~~~ 352 (658)
T PRK03705 276 TL-SLRGIDNRSYYWIREDGDYHNWTGCGNTLNLSHPAVVDWAIDCLRYWVETCHVDGFRFDLATVLGRTP-EFRQ-DAP 352 (658)
T ss_pred ch-hcccCCCccceEECCCCCcCCCCCccCcccCCCHHHHHHHHHHHHHHHHHhCCCEEEEEcHhhhCcCc-ccch-hhH
Confidence 65 45667778888888788888999999999999999999999999999999999999999999998653 3343 356
Q ss_pred HHHHHHhccccCCceEEecCCCCc-cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCC
Q 011993 157 LIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKR 235 (473)
Q Consensus 157 ~~~~~~~~~~~~~~~li~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (473)
++++++.++..+++.++||.|+.+ ..+..+.++. .++.||+.|++.++.++.+.......++.++.++..++....+
T Consensus 353 ~~~ai~~d~vl~~~~ligE~Wd~~~~~~~~g~~~~--~~~~~Nd~fRd~ir~f~~~~~~~~~~~~~~l~gs~~~~~~~~~ 430 (658)
T PRK03705 353 LFTAIQNDPVLSQVKLIAEPWDIGPGGYQVGNFPP--PFAEWNDHFRDAARRFWLHGDLPLGEFAGRFAASSDVFKRNGR 430 (658)
T ss_pred HHHHHhhCccccceEEEEecccCCCChhhhcCCCc--ceEEEchHHHHHHHHHHccCCCcHHHHHHHHhcchhhccccCC
Confidence 788888888889999999999987 5666677763 4689999999999999988888888899999998888876667
Q ss_pred CCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCce
Q 011993 236 KPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP 315 (473)
Q Consensus 236 ~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P 315 (473)
.|..++||+++||+.++.+++.+..+++.++|+.+.+|.+.++||||+.+|...++.....+.++.|++++++|+++|+|
T Consensus 431 ~p~~siNyv~~HD~~TL~D~~~~~~~hn~~nge~n~dg~~~n~s~n~g~eg~~~~~~~~~~r~~~~r~~~a~l~~sqG~P 510 (658)
T PRK03705 431 LPSASINLVTAHDGFTLRDCVCFNQKHNEANGEENRDGTNNNYSNNHGKEGLGADLDLVERRRASIHALLTTLLLSQGTP 510 (658)
T ss_pred CCCeEEEEEEeCCCccHHHHHhhhccchhhcccccccccccccccccCccCCCccHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 88999999999999999999999999999999999999999999999999998888888888899999999999999999
Q ss_pred eeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCC-CCC-Ccceeec------
Q 011993 316 MMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDF-LNI-NDVTWHE------ 387 (473)
Q Consensus 316 ~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~-~~~-~~~~~~~------ 387 (473)
|||+|||+|+++.++.++|++++..+.|+|+.. ..++++|+|+||+|||+||+|+..++ ..+ ..+.|+.
T Consensus 511 ~i~~GdE~grtq~G~nN~y~~~~~i~~~dW~~~---~~~l~~f~k~Li~lRk~~~~l~~~~~~~~~~~~~~w~~~~~~~~ 587 (658)
T PRK03705 511 MLLAGDEHGHSQHGNNNAYCQDNALTWLDWSQA---DRGLTAFTAALIHLRQRIPALTQNRWWEEGDGNVRWLNRQAQPL 587 (658)
T ss_pred HHHhhHHhccCCCCCCCCccCCCCccccccchh---hhHHHHHHHHHHHHHHhChhhcccccccCCCCCeEEeCCCCCcC
Confidence 999999999999999999999999999999964 36899999999999999999998877 322 3466652
Q ss_pred --cccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCC
Q 011993 388 --DNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPY 465 (473)
Q Consensus 388 --~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~ 465 (473)
..| ......++|.. .+.++|++|.+.+++.+.||. +.|..+++++... . . .....+.++++
T Consensus 588 ~~~~w-~~~~~~~~~~~----~~~~~v~~N~~~~~~~~~lp~----~~w~~~~~~~~~~--~---~---~~~~~~~~~~~ 650 (658)
T PRK03705 588 SADEW-QQGPKQLQILL----SDRWLIAINATLEVTEIVLPE----GEWHAIPPFAGED--N---P---VITAVWHGPAH 650 (658)
T ss_pred ChhHh-CCcceEEEEEE----CCCEEEEECCCCCCeEEECCC----cceEEEEccCCCc--c---c---ccCceeeecCc
Confidence 233 23356777776 346999999999999999986 4799886543221 1 1 23566889999
Q ss_pred eEEEEEeC
Q 011993 466 SSILLEAK 473 (473)
Q Consensus 466 ~~~vl~~~ 473 (473)
++.||..+
T Consensus 651 ~~~~~~~~ 658 (658)
T PRK03705 651 GVCVFQRQ 658 (658)
T ss_pred EEEEEecC
Confidence 99998754
No 3
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=100.00 E-value=2.1e-61 Score=533.50 Aligned_cols=412 Identities=42% Similarity=0.722 Sum_probs=348.8
Q ss_pred CCccccCCCC----CCCCCCcCCCCCcccCCCCCCC--CCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCC
Q 011993 1 MEFQRRRNPR----DHMVNTWGYSTINFFSPMSRYA--AGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA 74 (473)
Q Consensus 1 ~~~~~~~~~~----~~~~~~~GY~~~d~~~vdp~~G--t~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~ 74 (473)
||.+.++... .++.+||||++.||++|||+|| + ++|||+||++||++||+||||+|+|||+.++..
T Consensus 207 ~Pi~~~~~~~~~~~~g~~~yWGY~~~~yfa~dp~yg~~~--------~~efk~lV~~~H~~GI~VILDvV~NHt~~~~~~ 278 (1221)
T PRK14510 207 NPIFASVDEHHLPQLGLSNYWGYNTVAFLAPDPRLAPGG--------EEEFAQAIKEAQSAGIAVILDVVFNHTGESNHY 278 (1221)
T ss_pred CCccccCcccccccccCcCcCCCCCCCCCCcChhhccCc--------HHHHHHHHHHHHHCCCEEEEEEccccccCCCCC
Confidence 6777766522 2467899999999999999999 7 599999999999999999999999999983322
Q ss_pred CCccccccCCCCccceeec--CCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCC
Q 011993 75 NPYTTSFRGIDNKVYYMVD--GTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPL 152 (473)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~ 152 (473)
+|-+ .+.+.++..||... ..+.+.++++|+..+|+.+|+|+++|++++++|++ +||||||||+|.+|.++..++|.
T Consensus 279 ~p~~-~~~~~d~~~yy~~~~~~~~~y~~~~G~gn~~n~~~p~v~~~i~d~lr~Wv~-~gVDGfRfDla~~l~r~~~~f~~ 356 (1221)
T PRK14510 279 GPTL-SAYGSDNSPYYRLEPGNPKEYENWWGCGNLPNLERPFILRLPMDVLRSWAK-RGVDGFRLDLADELAREPDGFID 356 (1221)
T ss_pred CCcc-cccCCCCCCceEecCCCCCcccCCCCCCCccccCCHHHHHHHHHHHHHHHH-hCCCEEEEechhhhccCccchHH
Confidence 2212 34556677788764 34567788898888999999999999999999996 99999999999999655445677
Q ss_pred CCHHHHHHHHhccccCCceEEecCCCCc-cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCccccc
Q 011993 153 NAPPLIRAIAKDAILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYR 231 (473)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~li~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 231 (473)
...+.++++.++..-.++.+|||+|+.. ..+..+.|+.. ++.||+.|++.++.|+.|+.+....++..+.++.+.|.
T Consensus 357 ~~~~~l~ai~~d~~l~~~~ligE~Wd~~~~~~~~g~f~~~--~~~~N~~frd~vr~f~~g~~~~~~~~a~~l~gs~d~~~ 434 (1221)
T PRK14510 357 EFRQFLKAMDQDPVLRRLKMIAEVWDDGLGGYQYGKFPQY--WGEWNDPLRDIMRRFWLGDIGMAGELATRLAGSADIFP 434 (1221)
T ss_pred HHHHHHHHhCCCcCcccCcEEEecccCCCCccccCCCCcc--eeeeccHHHHHHHHHhcCCCchHHHHHHHHhCcHhhcC
Confidence 7788888888776667778899999876 55667777743 58899999999999999998878899999999888887
Q ss_pred ccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHh
Q 011993 232 VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVS 311 (473)
Q Consensus 232 ~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~ 311 (473)
.....+..++||++|||+.|+.+++.++.+|+.+||+.+.+|.+.+.||+|+..|....+.....+.+++|++++++|++
T Consensus 435 ~~~~~~~~~iNfi~~HD~~rl~dl~~y~~khN~ange~nrdg~~~n~s~n~g~eg~t~~~~~~~~r~~~~r~a~~~l~~s 514 (1221)
T PRK14510 435 HRRRNFSRSINFITAHDGFTLLDLVSFNHKHNEANGEDNRDGTPDNQSWNCGVEGYTLDAAIRSLRRRRLRLLLLTLMSF 514 (1221)
T ss_pred ccCCCcccceEEEeeCCchHHHHHhhhccccchhccccccCCCCccccccccccCCCCchHHHHHHHHHHHHHHHHHHhC
Confidence 55667789999999999999999999999999999999999999999999999999988888888899999999999999
Q ss_pred cCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCC--------Ccc
Q 011993 312 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI--------NDV 383 (473)
Q Consensus 312 pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~--------~~~ 383 (473)
+|+||||||||+|.+..++.+.|++++.+++|+|+.. ..++++|||+|++|||+||+|+.|++... ..|
T Consensus 515 ~GiP~Iy~GdE~g~tq~Gn~n~y~~~~~r~~~~W~~~---~~~l~~f~k~Li~lRk~~~~L~~g~~~~~~~~~~~~~~dv 591 (1221)
T PRK14510 515 PGVPMLYYGDEAGRSQNGNNNGYAQDNNRGTYPWGNE---DEELLSFFRRLIKLRREYGVLRQGEFSSGTPVDASGGKDV 591 (1221)
T ss_pred CCCcEEecchhcccccCCCCCCCCCCCccccCCcccc---cHHHHHHHHHHHHHHHhChhhccCccccCcccccCCCCCE
Confidence 9999999999999999999999999999999999873 35899999999999999999999998754 246
Q ss_pred eeec--------cccCCCCCcEEEEEEecCC-----CCeEEEEEeCCCCcEEEECCC
Q 011993 384 TWHE--------DNWDNYDSKFLAFTLHDNN-----GADIYLAFNAHDFFVKVSLPP 427 (473)
Q Consensus 384 ~~~~--------~~~~~~~~~v~a~~R~~~~-----~~~~lvv~N~~~~~~~~~l~~ 427 (473)
.|+. ..|.......+++...... ++.++|++|++.+.+.+.||.
T Consensus 592 ~w~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~v~~N~~~~~~~~~lP~ 648 (1221)
T PRK14510 592 EWLRRKGEQNQDRFWDKRSTEALVAVLNRPAGERQVDDRFAVLLNSHHEELTLHLPE 648 (1221)
T ss_pred EEECCCCCcCChhhcCCCCCCEEEEEEecCCCCCCCCCeEEEEECCCCCCeEEECCh
Confidence 7763 2343334555655553321 257999999999999999985
No 4
>COG1523 PulA Type II secretory pathway, pullulanase PulA and related glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1e-59 Score=485.07 Aligned_cols=446 Identities=49% Similarity=0.824 Sum_probs=393.3
Q ss_pred CCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccc
Q 011993 10 RDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY 89 (473)
Q Consensus 10 ~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~ 89 (473)
...+.+||||++..||+++++|-+.|. |..++.|||.||+++|+.||.||||||+|||+.++...|-+ .|++.++..|
T Consensus 233 ~~gl~n~WGYdP~~fFAp~~~Yss~p~-p~~~i~EfK~mV~~lHkaGI~VILDVVfNHTae~~~~g~t~-~f~~id~~~Y 310 (697)
T COG1523 233 KSGLNNNWGYDPLNFFAPEGRYASNPE-PATRIKEFKDMVKALHKAGIEVILDVVFNHTAEGNELGPTL-SFRGIDPNYY 310 (697)
T ss_pred ccccccccCCCcccccCCCccccCCCC-cchHHHHHHHHHHHHHHcCCEEEEEEeccCcccccCcCccc-ccccCCcCce
Confidence 367889999999999999999999877 88999999999999999999999999999999755556644 7899999999
Q ss_pred eeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCC
Q 011993 90 YMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSR 169 (473)
Q Consensus 90 ~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (473)
|+.+++|.+.+++||+.+||.++|.||+.|+|+++||+++++|||||+|.|..+.++.++ ......++..+........
T Consensus 311 yr~~~dg~~~N~TGcGNtln~~hpmvrk~ivDsLrYWv~e~hVDGFRFDLa~~l~r~~~~-~~~~~~l~~~~~~~p~l~~ 389 (697)
T COG1523 311 YRLDPDGYYSNGTGCGNTLNTEHPMVRKLIVDSLRYWVEEYHVDGFRFDLAGVLGRETML-FDINANLFLAGEGDPVLSG 389 (697)
T ss_pred EEECCCCCeecCCccCcccccCChHHHHHHHHHHHHHHHHhCCCceeecchhhccccccc-cccCcchhhhccCCccccC
Confidence 999888999999999999999999999999999999999999999999999999888763 3445667777777777777
Q ss_pred ceEEecCCCCc-cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecC
Q 011993 170 CKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHD 248 (473)
Q Consensus 170 ~~li~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD 248 (473)
+.+|||+|+.+ ..++.|.|+....+++||..|++.++.|+.|+.+....++..+.++.+.|....+.|..++||++.||
T Consensus 390 ~kliAepwD~g~~gyqvG~Fpd~~~~aewng~~rD~vr~F~~G~~~~~~~~a~rl~gS~d~~~~~~~~p~~sINyv~aHD 469 (697)
T COG1523 390 VKLIAEPWDIGPGGYQVGNFPDSPRWAEWNGRFRDDVRRFWRGDAGLVGEFAKRLAGSSDLYKRNGRRPSQSINYVTAHD 469 (697)
T ss_pred ceeeecchhhcCCCcccccCCCccchhhhCCcccccccceeeCCCccHHHHHHHhhcCcchhhccCCCccceeeEEeecC
Confidence 88999999888 78999999966678999999999999999999999999999999999999988899999999999999
Q ss_pred CCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccC
Q 011993 249 GFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRY 328 (473)
Q Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~ 328 (473)
..+|.|++.+..+|+.++|+.+.+|.+.++||||+..|..+.+.....+....+.+.+.+++..|+||+-.|||+|.+..
T Consensus 470 gfTL~D~vsy~~khneange~nrdg~~~n~s~N~g~eg~t~~p~i~~~re~~~~~~~~tlllsqG~pml~~gDe~~rtq~ 549 (697)
T COG1523 470 GFTLWDLVSYNHKHNEANGENNRDGHNDNYSWNHGVEGPTGDPFIHAGRERQRTNLLATLLLSQGTPMLLAGDEFGRTQY 549 (697)
T ss_pred CCcHhHhhhhccCCChhhcchhhhhhhhhhccccccccCCCCHHHHHhHHHHHHHHHHHHHhhcCCcccccccccccccc
Confidence 99999999999999999999999999999999999999999999888888888999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCC----Ccceee--------ccccCCCCCc
Q 011993 329 GNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNI----NDVTWH--------EDNWDNYDSK 396 (473)
Q Consensus 329 ~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~----~~~~~~--------~~~~~~~~~~ 396 (473)
++.++|++++..+-++|+. .....+++|.+.||+|||++|+|+...+... ..+.|. ...|......
T Consensus 550 gnnNsYcqdn~inwlDW~~--~~~~~l~~f~~~lIaLRk~~~af~~~~f~~~~~~~~~i~~~~~~g~~~~~~~w~~~~~~ 627 (697)
T COG1523 550 GNNNAYCQDNEINWLDWST--EANNDLVEFTKGLIALRKAHPAFRRRSFFEGKRGVKDITWLNWNGIPLTQDDWNNGFTG 627 (697)
T ss_pred cccccccCCcccceeccCc--cccHHHHHHHHHHHHHhhhcchhcccchhhccCCCcccceeccCCeeechhcccCCCCc
Confidence 9999999999999999993 3567999999999999999999999777663 344443 4455344467
Q ss_pred EEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEEe
Q 011993 397 FLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 397 v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 472 (473)
.+++..... .+.++|++|...+.+.+.+|... +.|..++++...... ...++++++.++.||..
T Consensus 628 ~l~~~l~~~-~~~~lv~~N~~~~~~~~~lp~~~--~~~~~~~~~~~~~~~---------~~~~~~~~~~s~~vl~~ 691 (697)
T COG1523 628 ALAVVLDGD-KERLLVLINATAEPVEFELPEDE--GKWAGLVDTSTPPGF---------DIREVSLPGRSVLVLTR 691 (697)
T ss_pred eEEEEecCC-CccEEEEecCCccccceeccccc--CcceeeecccCCCCc---------ccceeecCCcEEEEEee
Confidence 778877554 68999999999999999999853 568887777544321 11268999999999874
No 5
>TIGR02403 trehalose_treC alpha,alpha-phosphotrehalase. Trehalose is a glucose disaccharide that serves in many biological systems as a compatible solute for protection against hyperosmotic and thermal stress. This family describes trehalose-6-phosphate hydrolase, product of the treC (or treA) gene, which is often found together with a trehalose uptake transporter and a trehalose operon repressor.
Probab=100.00 E-value=4.4e-58 Score=475.45 Aligned_cols=387 Identities=18% Similarity=0.225 Sum_probs=271.2
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
+|++++|+.+ |||+++||++|||+||| +++|++||++||++||+||||+|+|||+. +|+|+++
T Consensus 47 ~Pi~~~~~~~------~gY~~~d~~~id~~~Gt--------~~~~~~lv~~ah~~gi~vilD~v~NH~~~---~~~~f~~ 109 (543)
T TIGR02403 47 NPFYVSPQKD------NGYDVSDYYAINPLFGT--------MADFEELVSEAKKRNIKIMLDMVFNHTST---EHEWFKK 109 (543)
T ss_pred CCcccCCCCC------CCCCccccCccCcccCC--------HHHHHHHHHHHHHCCCEEEEEECcccccc---chHHHHH
Confidence 6888887643 49999999999999999 49999999999999999999999999999 9999986
Q ss_pred ccC--CCCccceeecC-CC-----Cc-------------------ccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCcc
Q 011993 81 FRG--IDNKVYYMVDG-TG-----QL-------------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVD 133 (473)
Q Consensus 81 ~~~--~~~~~~~~~~~-~~-----~~-------------------~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giD 133 (473)
... ....+||.+.+ .+ +. ..|...+||||++||+|+++|.+++++|+ ++|||
T Consensus 110 ~~~~~~~y~~~y~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~v~~~i~~~~~~W~-~~giD 188 (543)
T TIGR02403 110 ALAGDSPYRDFYIWRDPKGKPPTNWQSKFGGSAWEYFGDTGQYYLHLFDKTQADLNWENPEVREELKDVVNFWR-DKGVD 188 (543)
T ss_pred hhcCCCcccCceEecCCCCCCCCcccccCCCcCccccCCCCceEEeccCCcCCccCCCCHHHHHHHHHHHHHHH-HcCCC
Confidence 532 22367777631 11 11 11234589999999999999999999999 68999
Q ss_pred EEEEecccccccCCCCC----------C---CCCHHHHHHHHhc-cccCCceEEecCCCCcc----cccc---CCCCCcc
Q 011993 134 GFRFDLASVLCRGTDGS----------P---LNAPPLIRAIAKD-AILSRCKIIAEPWDCRG----LYLV---GKFPNWD 192 (473)
Q Consensus 134 GfR~Daa~~l~~~~~~~----------~---~~~~~~~~~~~~~-~~~~~~~li~E~~~~~~----~~~~---~~~~~~~ 192 (473)
|||||+|++|.++.... + ....++++++++. ...+++++|||.|.... .|.. ..++
T Consensus 189 GfRlDa~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~lvgE~~~~~~~~~~~y~~~~~~~~d--- 265 (543)
T TIGR02403 189 GFRLDVINLISKDQFFEDDEIGDGRRFYTDGPRVHEYLQEMNQEVFGDNDSVTVGEMSSTTIENCIRYSNPENKELS--- 265 (543)
T ss_pred EEEEeeehhhccCcccCCCCCCCCccccCCChHHHHHHHHHHHHhhccCCeEEEEEeCCCCHHHHHhhhCCCCCeeC---
Confidence 99999999997653110 0 1124577777653 12789999999996431 1221 1222
Q ss_pred hhhhhhhHHHHHHHHHHcCCC-----CcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCC
Q 011993 193 RWAEWNGKYRDDLRKFIKGDP-----GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANG 267 (473)
Q Consensus 193 ~~~~~~~~~~~~l~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~ 267 (473)
..|++ ......+..+.. .....+...+......+. .......+|++|||+.|+.+..+..
T Consensus 266 --~~~nf--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~~~~~~~fl~NHD~~R~~s~~g~~-------- 330 (543)
T TIGR02403 266 --MVFTF--HHLKVDYPNGEKWTLAKFDFAKLKEIFSTWQTGMQ---AGGGWNALFWNNHDQPRAVSRFGDD-------- 330 (543)
T ss_pred --eEECh--hhhhchhccccccccCCCCHHHHHHHHHHHHHhcc---ccCcceeeecCCCChhhHHHhcCCc--------
Confidence 33333 233333333221 112223222221111110 0123456899999998875433210
Q ss_pred CCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCC----------------
Q 011993 268 EGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN---------------- 331 (473)
Q Consensus 268 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~---------------- 331 (473)
.....+++++++++++++||+|+||||||+||.+....
T Consensus 331 --------------------------~~~~~~~~k~~a~ll~tlpG~P~IYYGdEiGm~~~~~~~~~~~~D~~~~~~~~~ 384 (543)
T TIGR02403 331 --------------------------GEYRVESAKMLAAAIHLLRGTPYIYQGEEIGMTNPKFTNIEDYRDVESLNAYDI 384 (543)
T ss_pred --------------------------hhhHHHHHHHHHHHHHHCCCCeEEEeccccCCCCCCCCCHHHhcCHHHHHHHHH
Confidence 01113457889999999999999999999999974210
Q ss_pred ---------------CCCCCCCCCCCccccccc--------------------------ccchhHHHHHHHHHHHHhccc
Q 011993 332 ---------------NSYGHDTAINNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRR 370 (473)
Q Consensus 332 ---------------~~~~~~~~r~~~~W~~~~--------------------------~~~~~l~~~~~~L~~lR~~~p 370 (473)
....++.+|.||+|+... ..+.++++|||+|++||+++|
T Consensus 385 ~~~~g~~~~~~~~~~~~~~rd~~RtPm~W~~~~~aGFs~~~pwl~~~~~~~~~nv~~q~~~~~Sll~~yr~Li~lRk~~~ 464 (543)
T TIGR02403 385 LLKKGKSEEEALAILKQKSRDNSRTPMQWNNEKNAGFTTGKPWLGVATNYKEINVEKALADDNSIFYFYQKLIALRKSEP 464 (543)
T ss_pred HhhcCCCHHHHHHhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCCCccccCHHHHhhCCccHHHHHHHHHHHHhhcc
Confidence 112456789999998742 235789999999999999999
Q ss_pred CCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCC
Q 011993 371 VFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVP 450 (473)
Q Consensus 371 ~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
+|..|++..+. ..++.|++|.|... ++.++||+|++++++++.||... ..+..++++.....
T Consensus 465 aL~~G~~~~~~----------~~~~~v~a~~R~~~-~~~~lVv~N~s~~~~~~~l~~~~--~~~~~~~~~~~~~~----- 526 (543)
T TIGR02403 465 VITDGDYQFLL----------PDDPSVWAYTRTYK-NQKLLVINNFYGEEKTIELPLDL--LSGKILLSNYEEAE----- 526 (543)
T ss_pred cccCccEEEee----------cCCCcEEEEEEEcC-CcEEEEEEECCCCCeEeeCCccC--cCceEEEecCCCcC-----
Confidence 99999987651 23457999999886 78999999999999999998643 34566666522211
Q ss_pred CCCCCCCCeEEEcCCeEEEEEe
Q 011993 451 EGAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 451 ~~~~~~~~~i~l~p~~~~vl~~ 472 (473)
....++|+||+++|+..
T Consensus 527 -----~~~~~~L~p~~~~i~~~ 543 (543)
T TIGR02403 527 -----KDAKLELKPYEAIVLLI 543 (543)
T ss_pred -----CCCcEEECCceEEEEeC
Confidence 12679999999999863
No 6
>PRK10785 maltodextrin glucosidase; Provisional
Probab=100.00 E-value=1.4e-58 Score=483.80 Aligned_cols=342 Identities=18% Similarity=0.280 Sum_probs=259.3
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
+|++++| ++|||+++||++|||+|||+ ++|++||++||+||||||||+|+||||. +|+||+.
T Consensus 199 ~Pif~s~-------s~hgYd~~Dy~~iDp~~Gt~--------~df~~Lv~~aH~rGikVilD~V~NH~~~---~~~~f~~ 260 (598)
T PRK10785 199 NPIFTAP-------SVHKYDTEDYRHVDPQLGGD--------AALLRLRHATQQRGMRLVLDGVFNHTGD---SHPWFDR 260 (598)
T ss_pred CCcccCC-------CCCCcCcccccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCcCCC---CCHHHHH
Confidence 4666654 57999999999999999995 9999999999999999999999999999 9999975
Q ss_pred ccC----------CCCccceeecCCCCcccccC--CcCCCCCCCHHHHHHHHH----HHHHHHHh-cCccEEEEeccccc
Q 011993 81 FRG----------IDNKVYYMVDGTGQLLNYAG--CGNTLNCNHPVVMELILD----SLRHWVVE-YHVDGFRFDLASVL 143 (473)
Q Consensus 81 ~~~----------~~~~~~~~~~~~~~~~~~~~--~~~dln~~np~V~~~i~~----~~~~w~~~-~giDGfR~Daa~~l 143 (473)
... .+..+||.+.+.+.+..|.+ .+|+||+.||+|+++|++ ++++|+++ +||||||||+|+++
T Consensus 261 ~~~~~~ga~~~~~spy~dwf~~~~~~~~~~w~g~~~lPdLN~~np~v~~~l~~~~~~v~~~Wl~~~~giDG~RlDva~~v 340 (598)
T PRK10785 261 HNRGTGGACHHPDSPWRDWYSFSDDGRALDWLGYASLPKLDFQSEEVVNEIYRGEDSIVRHWLKAPYNIDGWRLDVVHML 340 (598)
T ss_pred hhccccccccCCCCCcceeeEECCCCCcCCcCCCCcCccccCCCHHHHHHHHhhhhHHHHHhhcCCCCCcEEEEecHhHh
Confidence 421 12257888876665555543 479999999999999995 89999975 89999999999998
Q ss_pred ccCCCCCCCCCHHHHHHHHhc--cccCCceEEecCCCCccccccCC-CCCcchhhhhhh-HHHHHHHHHHcCCC------
Q 011993 144 CRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGK-FPNWDRWAEWNG-KYRDDLRKFIKGDP------ 213 (473)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~l~~~~~~~~------ 213 (473)
++.. ......++++++++. ..+|++++|||.|.....+..+. ++ +.+|+ .|...++.++.+..
T Consensus 341 ~~~~--~~~~~~~f~~~~~~~vk~~~pd~~ligE~~~~~~~~l~~~~~d-----~~mny~~f~~~~~~~~~~~~~~~~~~ 413 (598)
T PRK10785 341 GEGG--GARNNLQHVAGITQAAKEENPEAYVLGEHFGDARQWLQADVED-----AAMNYRGFAFPLRAFLANTDIAYHPQ 413 (598)
T ss_pred cccc--CccccHHHHHHHHHHHHhhCCCeEEEEeccCChhhhccCcccc-----ccccchhhhhHHHHHhhccccccCcc
Confidence 7542 233455677777663 46899999999997665554432 33 45554 46566676665432
Q ss_pred -CcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHH
Q 011993 214 -GMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDAS 292 (473)
Q Consensus 214 -~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~ 292 (473)
.....+...+......+. ......++||++|||+.|+.+.... .
T Consensus 414 ~~~~~~~~~~l~~~~~~~~--~~~~~~~~n~l~nHD~~R~~~~~~~----------------------------~----- 458 (598)
T PRK10785 414 QIDAQTCAAWMDEYRAGLP--HQQQLRQFNQLDSHDTARFKTLLGG----------------------------D----- 458 (598)
T ss_pred CCCHHHHHHHHHHHHHhCC--HHHHHHhhhccCCCccchhhhhhCC----------------------------C-----
Confidence 123344444432222121 1111246799999999987543220 0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCC
Q 011993 293 IKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVF 372 (473)
Q Consensus 293 ~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l 372 (473)
..++++|++++|++||+|+||||||+||.+. ..+.+|.+|+|+... ...+++++||+|++||+++|+|
T Consensus 459 -----~~~~kla~~ll~t~pGiP~IYYGdE~G~~g~------~dp~~R~~m~W~~~~-~~~~l~~~~r~Li~lRk~~~aL 526 (598)
T PRK10785 459 -----KARMPLALVWLFTWPGVPCIYYGDEVGLDGG------NDPFCRKPFPWDEAK-QDGALLALYQRMIALRKKSQAL 526 (598)
T ss_pred -----HHHHHHHHHHHHhCCCCcEEEeeeeccccCC------CCCCccCCcCCCccc-CchHHHHHHHHHHHHHhhCccc
Confidence 4568999999999999999999999999874 234578999998743 2458999999999999999999
Q ss_pred CCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCC
Q 011993 373 GREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP 427 (473)
Q Consensus 373 ~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~ 427 (473)
+.|++..+ ..+++|++|.|... ++.++||+|++ +.+++.||.
T Consensus 527 ~~G~~~~l-----------~~~~~v~af~R~~~-~~~vlVviN~s-~~~~v~lp~ 568 (598)
T PRK10785 527 RRGGCQVL-----------YAEGNVVVFARVLQ-QQRVLVAINRG-EACEVVLPA 568 (598)
T ss_pred ccCcEEEE-----------EeCCCEEEEEEECC-CCEEEEEEECC-CCeEEeccc
Confidence 99998765 34568999999876 89999999999 778888875
No 7
>PRK10933 trehalose-6-phosphate hydrolase; Provisional
Probab=100.00 E-value=7.7e-58 Score=472.66 Aligned_cols=390 Identities=17% Similarity=0.232 Sum_probs=272.7
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
+|++++|..+ |||++.||++|||+|||. +||++||++||++||+||||+|+||++. +|+|+++
T Consensus 53 ~P~~~~~~~~------~gY~~~d~~~id~~~Gt~--------~d~~~lv~~~h~~gi~vilD~V~NH~s~---~~~wf~~ 115 (551)
T PRK10933 53 TPFYVSPQVD------NGYDVANYTAIDPTYGTL--------DDFDELVAQAKSRGIRIILDMVFNHTST---QHAWFRE 115 (551)
T ss_pred CCCCCCCCCC------CCCCcccCCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCccC---chhHHHh
Confidence 6888776633 699999999999999994 9999999999999999999999999999 9999987
Q ss_pred ccCCCC--ccceeecC-------CCCcc-------------------cccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCc
Q 011993 81 FRGIDN--KVYYMVDG-------TGQLL-------------------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHV 132 (473)
Q Consensus 81 ~~~~~~--~~~~~~~~-------~~~~~-------------------~~~~~~~dln~~np~V~~~i~~~~~~w~~~~gi 132 (473)
....+. .+||.|.+ ..+.+ .|...+||||+.||+|+++|++++++|+ ++||
T Consensus 116 ~~~~~~~y~d~y~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdLn~~np~V~~~l~~~~~~W~-~~Gv 194 (551)
T PRK10933 116 ALNKESPYRQFYIWRDGEPETPPNNWRSKFGGSAWRWHAESEQYYLHLFAPEQADLNWENPAVRAELKKVCEFWA-DRGV 194 (551)
T ss_pred hcCCCCCCcCceEecCCCCCCCCCcccccCCCccccccCCCCceEeecccccCCccCCCCHHHHHHHHHHHHHHH-HCCC
Confidence 543322 57887631 11111 1223589999999999999999999999 7999
Q ss_pred cEEEEecccccccCCCCCCC--------------CCHHHHHHHHhcc-ccCCceEEecCCCCcc----ccccCCCCCcch
Q 011993 133 DGFRFDLASVLCRGTDGSPL--------------NAPPLIRAIAKDA-ILSRCKIIAEPWDCRG----LYLVGKFPNWDR 193 (473)
Q Consensus 133 DGfR~Daa~~l~~~~~~~~~--------------~~~~~~~~~~~~~-~~~~~~li~E~~~~~~----~~~~~~~~~~~~ 193 (473)
||||||+|+++.++. ++|. ...++++++++.. ..+++++|||.|.... .|....-+.+
T Consensus 195 DGfRlDa~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~vgE~~~~~~~~~~~y~~~~~~~~-- 271 (551)
T PRK10933 195 DGLRLDVVNLISKDQ-DFPDDLDGDGRRFYTDGPRAHEFLQEMNRDVFTPRGLMTVGEMSSTSLEHCQRYAALTGSEL-- 271 (551)
T ss_pred cEEEEcchhhcCcCC-CCCCCcccccccccCCChHHHHHHHHHHHHhhcccCcEEEEeecCCCHHHHHHhhcccCCee--
Confidence 999999999998762 2222 2356788887643 2346889999986431 1211100111
Q ss_pred hhhhhhHHHHHHHHHHcCCCC-----cHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCC
Q 011993 194 WAEWNGKYRDDLRKFIKGDPG-----MKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGE 268 (473)
Q Consensus 194 ~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~ 268 (473)
...| .|......+..+... ....+...+...... ........+|++|||+.|+.+..+..
T Consensus 272 ~~~f--nf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~fl~NHD~~R~~sr~g~~--------- 336 (551)
T PRK10933 272 SMTF--NFHHLKVDYPNGEKWTLAKPDFVALKTLFRHWQQG----MHNVAWNALFWCNHDQPRIVSRFGDE--------- 336 (551)
T ss_pred eeEe--cHHHhhhhhccCCcccccccCHHHHHHHHHHHHHh----hcccCeeccccCCCCcccHHHHcCCc---------
Confidence 1222 333333333333211 111222222111111 11122456899999998864433210
Q ss_pred CCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCC------------------
Q 011993 269 GGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN------------------ 330 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~------------------ 330 (473)
...+...++++++++|++||+|+||||||+||.+...
T Consensus 337 -------------------------~~~~~~~aklla~ll~tlpG~P~IYyGeEiGm~~~~~~~~~~~~D~~~~~~~~~~ 391 (551)
T PRK10933 337 -------------------------GEYRVPAAKMLAMVLHGMQGTPYIYQGEEIGMTNPHFTRITDYRDVESLNMFAEL 391 (551)
T ss_pred -------------------------hhHHHHHHHHHHHHHHhCCCceEEEeecccCCCCCCCCCHHHhcCHHHHHHHHHH
Confidence 1122455888999999999999999999999998321
Q ss_pred -------------CCCCCCCCCCCCccccccc--------------------------ccchhHHHHHHHHHHHHhcccC
Q 011993 331 -------------NNSYGHDTAINNFQWGQLE--------------------------TKKNSHYRFFSEVIKFRQSRRV 371 (473)
Q Consensus 331 -------------~~~~~~~~~r~~~~W~~~~--------------------------~~~~~l~~~~~~L~~lR~~~p~ 371 (473)
....+++.+|.||+|+... ..+.+++++||+|++||+++|+
T Consensus 392 ~~~g~~~~~~~~~~~~~~Rd~~RtPMqW~~~~~~GFs~~~pwl~~~~~~~~inv~~Q~~~~~Sll~~yk~Li~lRk~~~a 471 (551)
T PRK10933 392 RNDGRDADELLAILASKSRDNSRTPMQWDNGDNAGFTQGEPWIGLCDNYQEINVEAALADEDSVFYTYQKLIALRKQEPV 471 (551)
T ss_pred hhcCCCHHHHHhhhhccCCCCCccccccCCCCCCCCCCCCCCCCCCcccccccHHHHhcCcccHHHHHHHHHHHhhcChh
Confidence 0123567799999998754 2347899999999999999999
Q ss_pred CCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCC
Q 011993 372 FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE 451 (473)
Q Consensus 372 l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 451 (473)
|..|++..+. ..++.|++|.|... ++.++||+|++++++.+.++.. .+.|..++++.....
T Consensus 472 L~~G~~~~~~----------~~~~~v~af~R~~~-~~~~lvv~N~s~~~~~~~~~~~--~~~~~~~l~~~~~~~------ 532 (551)
T PRK10933 472 LTWGDYQDLL----------PNHPSLWCYRREWQ-GQTLLVIANLSREPQPWQPGQM--RGNWQLLMHNYEEAS------ 532 (551)
T ss_pred hccceeEEec----------cCCCcEEEEEEEcC-CcEEEEEEECCCCCeeeecCcc--cCCceEEeecCcccc------
Confidence 9999987541 34568999999886 7899999999999999988732 357888777632110
Q ss_pred CCCCCCCeEEEcCCeEEEEEeC
Q 011993 452 GAAGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 452 ~~~~~~~~i~l~p~~~~vl~~~ 473 (473)
.....++|+||+++|++.|
T Consensus 533 ---~~~~~~~L~p~~~~~~~~~ 551 (551)
T PRK10933 533 ---PQPCAMTLRPFEAVWWLQK 551 (551)
T ss_pred ---CCCCcEEECCCeEEEEEeC
Confidence 0124699999999999865
No 8
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=100.00 E-value=1.1e-57 Score=478.90 Aligned_cols=392 Identities=29% Similarity=0.467 Sum_probs=294.0
Q ss_pred CCccccCCCC--CCC-CCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCc
Q 011993 1 MEFQRRRNPR--DHM-VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPY 77 (473)
Q Consensus 1 ~~~~~~~~~~--~~~-~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~ 77 (473)
||.+..++.+ +.. ..+|||+++||++|+++||++|..+..+++|||+||++||++||+||||+|+||++.. .+.+
T Consensus 184 ~Pi~~~~~~~~~~~~~~~~wGY~~~~y~~~~~~y~~~p~~~~~~~~efk~lV~~~H~~Gi~VilDvV~NH~~~~--~~~~ 261 (605)
T TIGR02104 184 LPVFDFAGVDEEDPNNAYNWGYDPLNYNVPEGSYSTNPYDPATRIRELKQMIQALHENGIRVIMDVVYNHTYSR--EESP 261 (605)
T ss_pred CCcccccccccccCCCCCCCCCCCccCCCcChhhhcCCCccchHHHHHHHHHHHHHHCCCEEEEEEEcCCccCC--CCCc
Confidence 6777776532 122 3459999999999999999987777778899999999999999999999999999852 2233
Q ss_pred cccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHH
Q 011993 78 TTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 157 (473)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~ 157 (473)
+ ++..+..||..++.+.+.++++|+.++|+.+|+||++|++++++|++++||||||+|+|.+++.+ +
T Consensus 262 f---~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~v~~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~----------~ 328 (605)
T TIGR02104 262 F---EKTVPGYYYRYNEDGTLSNGTGVGNDTASEREMMRKFIVDSVLYWVKEYNIDGFRFDLMGIHDIE----------T 328 (605)
T ss_pred c---cCCCCCeeEEECCCCCccCCCcccCCcccCCHHHHHHHHHHHHHHHHHcCCCEEEEechhcCCHH----------H
Confidence 3 23333334444677777888888999999999999999999999999999999999999888554 3
Q ss_pred HHHHHh--ccccCCceEEecCCCCccccccC------CCCCcchhhhhhhHHHHHHHH---------HHcCCCCcHHHHH
Q 011993 158 IRAIAK--DAILSRCKIIAEPWDCRGLYLVG------KFPNWDRWAEWNGKYRDDLRK---------FIKGDPGMKGILA 220 (473)
Q Consensus 158 ~~~~~~--~~~~~~~~li~E~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~ 220 (473)
++++.+ ....|+++++||.|+....+... ....+..++.||+.+++.++. |..+.......++
T Consensus 329 ~~~~~~~~~~~~p~~~ligE~w~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~rd~i~~~~~~~~~~~f~~g~~~~~~~l~ 408 (605)
T TIGR02104 329 MNEIRKALNKIDPNILLYGEGWDLGTPLPPEQKATKANAYQMPGIAFFNDEFRDALKGSVFHLKKKGFVSGNPGTEETVK 408 (605)
T ss_pred HHHHHHHHHhhCCCeEEEEccCCCCCCcchhhhhhhhccCCCCceEEECCcchhhhcCCccccccCceecCCCCcHHHHH
Confidence 555544 24679999999999876322211 111122457899999998873 3444444445566
Q ss_pred HHhcCCcccc--cccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011993 221 TRISGSSDLY--RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 298 (473)
Q Consensus 221 ~~l~~~~~~~--~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 298 (473)
..+......+ ......|..++||++|||+.|+.+++.+..+. . ....+.
T Consensus 409 ~~l~~~~~~~~~~~~~~~p~~~vnyl~~HD~~~l~d~l~~~~~~------------------------~-----~~~~~~ 459 (605)
T TIGR02104 409 KGILGSIELDAVKPSALDPSQSINYVECHDNHTLWDKLSLANPD------------------------E-----TEEQLK 459 (605)
T ss_pred hheeCChhhcccccccCChhheEEEEEecCCCCHHHHHHhhCCC------------------------C-----CHHHHH
Confidence 6666544333 12344677899999999999887665432110 0 022347
Q ss_pred HHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCC
Q 011993 299 RQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFL 378 (473)
Q Consensus 299 ~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~ 378 (473)
++++++++++|++||+||||||||+|+++.++.++|.++..+++|+|+.... ...++++||+|++|||++|+|+.++..
T Consensus 460 ~r~rla~alllts~GiP~iy~GdE~g~s~~g~~n~y~~~d~~~~ldW~~~~~-~~~~~~~~~~Li~lRk~~pal~~~~~~ 538 (605)
T TIGR02104 460 KRQKLATAILLLSQGIPFLHAGQEFMRTKQGDENSYNSPDSINQLDWDRKAT-FKDDVNYIKGLIALRKAHPAFRLSSAE 538 (605)
T ss_pred HHHHHHHHHHHHcCCCceeecchhhhccCCCCCCCccCCCcccccCcccccc-chHHHHHHHHHHHHHhhCccccCCChh
Confidence 7899999999999999999999999999988888899999999999987543 457999999999999999999998865
Q ss_pred CCCcceeeccccCCCCCcEEEEEEecCCC----CeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCC
Q 011993 379 NINDVTWHEDNWDNYDSKFLAFTLHDNNG----ADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLE 443 (473)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~v~a~~R~~~~~----~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 443 (473)
.+ .++.......++.|++|.|...+. +.++||+|++++.+++.||. .+.|+.++++...
T Consensus 539 ~i---~~~~~~~~~~~~~vla~~r~~~~~~~~~~~llVv~N~s~~~~~v~lp~---~~~w~~~~~~~~~ 601 (605)
T TIGR02104 539 DI---RKHLEFLPAEPSGVIAYRLKDHANGDPWKDIIVIHNANPEPVDIQLPS---DGTWNVVVDNKNA 601 (605)
T ss_pred hh---cceeEEccCCCCcEEEEEEeCCcCCCCcCeEEEEEeCCCCCeEEECCC---CCCEEEEECCCcC
Confidence 43 221111112457899999986432 47999999999999999875 3689999998644
No 9
>TIGR02456 treS_nterm trehalose synthase. Trehalose synthase interconverts maltose and alpha, alpha-trehalose by transglucosylation. This is one of at least three mechanisms for biosynthesis of trehalose, an important and widespread compatible solute. However, it is not driven by phosphate activation of sugars and its physiological role may tend toward trehalose degradation. This view is accentuated by numerous examples of fusion to a probable maltokinase domain. The sequence region described by this model is found both as the whole of a trehalose synthase and as the N-terminal region of a larger fusion protein that includes trehalose synthase activity. Several of these fused trehalose synthases have a domain homologous to proteins with maltokinase activity from Actinoplanes missouriensis and Streptomyces coelicolor (PubMed:15378530).
Probab=100.00 E-value=8.4e-56 Score=459.56 Aligned_cols=415 Identities=18% Similarity=0.262 Sum_probs=271.5
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
+|++++|+ .+|||+++||++|||+||| ++||++||++||++||+||||+|+||++. +|+|++.
T Consensus 48 ~Pi~~~~~------~~~gY~~~dy~~vd~~~Gt--------~~df~~Lv~~ah~~Gi~vilD~V~NH~s~---~~~~f~~ 110 (539)
T TIGR02456 48 LPFFQSPL------RDDGYDVSDYRAILPEFGT--------IDDFKDFVDEAHARGMRVIIDLVLNHTSD---QHPWFQE 110 (539)
T ss_pred CCCcCCCC------CCCCCCcccccccChhhCC--------HHHHHHHHHHHHHCCCEEEEEeccCcCCC---CCHHHHH
Confidence 68888765 2479999999999999999 59999999999999999999999999999 9999976
Q ss_pred ccC---CCCccceeecCCC-Cc--------------------------ccccCCcCCCCCCCHHHHHHHHHHHHHHHHhc
Q 011993 81 FRG---IDNKVYYMVDGTG-QL--------------------------LNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 130 (473)
Q Consensus 81 ~~~---~~~~~~~~~~~~~-~~--------------------------~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~ 130 (473)
... ...++||.+.+.+ .+ ..|...+|+||+.||+||++|++++++|+ ++
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~y~~~f~~~~pdln~~np~vr~~l~~~~~~w~-~~ 189 (539)
T TIGR02456 111 ARSNPDGPYRDFYVWSDTDEKYKDTRIIFVDTEKSNWTFDPVAKQYYWHRFFSHQPDLNYDNPAVHDAVHDVMRFWL-DL 189 (539)
T ss_pred HhhCCCCCCCceEEecCCCcccccccccccccCCCCccccCCcCeeEEecccCCCCccCCCCHHHHHHHHHHHHHHH-Hc
Confidence 432 1225777762111 00 01334589999999999999999999999 69
Q ss_pred CccEEEEecccccccCCCCCCC---CCHHHHHHHHhc--cccCCceEEecCCCCcc---ccccCCCCCcchhhhhhhHHH
Q 011993 131 HVDGFRFDLASVLCRGTDGSPL---NAPPLIRAIAKD--AILSRCKIIAEPWDCRG---LYLVGKFPNWDRWAEWNGKYR 202 (473)
Q Consensus 131 giDGfR~Daa~~l~~~~~~~~~---~~~~~~~~~~~~--~~~~~~~li~E~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 202 (473)
||||||||+++++.+...+... ...++++++++. ..+|+++++||.+.... .|.....+ ......|++.+.
T Consensus 190 GvDGfRlDav~~~~~~~~~~~~~~p~~~~f~~~~~~~v~~~~p~~~~iaE~~~~~~~~~~y~~~~~~-~~~d~~f~f~l~ 268 (539)
T TIGR02456 190 GVDGFRLDAVPYLYEREGTSCENLPETHEFLKRLRKMVDREYPGRMLLAEANQWPEEVVAYFGDEGD-PECHMAFNFPVM 268 (539)
T ss_pred CCCEEEEecHHhhhccCCCccCCCchHHHHHHHHHHHHHHhCCCeEEEEEeCCCHHHHHHhhCCCCC-CeeeeEEChhhh
Confidence 9999999999998655422211 124567777663 34699999999753221 12111001 011244555554
Q ss_pred HHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCC
Q 011993 203 DDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNC 282 (473)
Q Consensus 203 ~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (473)
..+...+... ....+...+.... ....+..+.+|++|||+.++..+.....++.... +....
T Consensus 269 ~~~~~~l~~~--~~~~l~~~l~~~~-----~~~~~~~~~~fl~nHD~~~~~~~~~~~~~~~~~~-----------~~~~~ 330 (539)
T TIGR02456 269 PRIFMALRRE--DRSPIIDILKETP-----DIPDSCQWCIFLRNHDELTLEMVTDEERDFMYAA-----------YAPDP 330 (539)
T ss_pred hhhhcccccC--CHHHHHHHHHHhh-----hccCCCceeeecCCCCccCccccChhhhhhhhhh-----------ccCCc
Confidence 3332222111 1222222222111 1123345678999999977532211110000000 00000
Q ss_pred CC-CCC-CChHHHHHH--HHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc---------
Q 011993 283 GF-EGE-TDDASIKAL--RSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE--------- 349 (473)
Q Consensus 283 ~~-~g~-~~~~~~~~~--~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~--------- 349 (473)
.. .+. ...|..+.. ..++++++++++|++||+|+||||||+||.+... ...++..|.||+|+...
T Consensus 331 ~~~~~~~~~~R~~s~~~~~~~~~kla~~~l~tlpG~P~IYYG~EiGm~~~~~--~~~~~~~R~pm~W~~~~~~gfs~~~~ 408 (539)
T TIGR02456 331 RMRINLGIRRRLAPLLDNDRRRIELLTALLLSLPGSPILYYGDEIGMGDNIW--LGDRNGVRTPMQWSPDRNAGFSSADP 408 (539)
T ss_pred chhcccchhhhhhhcccccHHHHHHHHHHHHhCCCceEEEechhhcCcCCCc--cCCCcCccCCcCcCCCCCCCCCCCCC
Confidence 00 000 001111111 1456899999999999999999999999986311 12345678999998631
Q ss_pred ------------------------ccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecC
Q 011993 350 ------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDN 405 (473)
Q Consensus 350 ------------------------~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~ 405 (473)
..+.+++++||+|++||+++|+|+.|++..+. ..+++|++|.|..+
T Consensus 409 ~~~~~p~~~~~~~~~~~~nv~~q~~~~~sll~~yr~Li~lRk~~~aL~~G~~~~l~----------~~~~~v~~f~R~~~ 478 (539)
T TIGR02456 409 GQLFLPPVQDPVYGYQQVNVEAQLRDPSSLLHWTRRVLHVRKAHPAFGRGSLTFLP----------TGNRRVLAFLREYE 478 (539)
T ss_pred cccccccccccccccchhhHHHHhhCcccHHHHHHHHHHHHhcCcccccCceEEEe----------cCCCCEEEEEEEcC
Confidence 13467999999999999999999999987651 24567999999887
Q ss_pred CCCeEEEEEeCCCCcEEEECCCCC-CCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEEe
Q 011993 406 NGADIYLAFNAHDFFVKVSLPPPP-PKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 406 ~~~~~lvv~N~~~~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 472 (473)
++.++||+|++++++.+.|+... .+..+.++++++.... ....+..|+|+|++++||+.
T Consensus 479 -~~~vlVv~N~s~~~~~v~l~~~~~~~~~~~dl~~~~~~~~-------~~~~~~~~~l~p~~~~~~~~ 538 (539)
T TIGR02456 479 -GERVLCVFNFSRNPQAVELDLSEFAGRVPVELIGGAPFPP-------VGGDGYLLTLGPHGFYWFRL 538 (539)
T ss_pred -CcEEEEEEeCCCCCEEeeccccccccCcceecccCCcccc-------ccCCcceEEECCceEEEEEe
Confidence 89999999999999999987643 2234566665442211 01123689999999999974
No 10
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=100.00 E-value=2.5e-52 Score=450.40 Aligned_cols=415 Identities=25% Similarity=0.391 Sum_probs=296.9
Q ss_pred CCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceee-
Q 011993 14 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV- 92 (473)
Q Consensus 14 ~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~- 92 (473)
.++|||++.+||+++++||++|.++..+++|||+||++||++||+||||+|+|||+. .++ |++.. +.||.+
T Consensus 526 ~ynWGYdp~~yfape~~Ygtdp~dp~~ri~EfK~LV~alH~~GI~VILDVVyNHt~~---~~~----f~~~~-p~Yy~~~ 597 (1111)
T TIGR02102 526 NYNWGYDPQNYFALSGMYSEDPKDPELRIAEFKNLINEIHKRGMGVILDVVYNHTAK---VYI----FEDLE-PNYYHFM 597 (1111)
T ss_pred ccccCCCcCcCcccccccccCCcCccccHHHHHHHHHHHHHCCCEEEEecccccccc---ccc----ccccC-CCceEee
Confidence 356999999999999999998788888899999999999999999999999999997 554 33333 355555
Q ss_pred cCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCCceE
Q 011993 93 DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKI 172 (473)
Q Consensus 93 ~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 172 (473)
+.+|...+.. ++.+++..+|.||++|++++++|+++|||||||||++.++..++ + .+..+++. ...|++++
T Consensus 598 ~~~G~~~~~~-~g~~l~~e~~~vrk~iiDsl~yWv~ey~VDGFRfDl~g~~d~~~---~---~~~~~~l~--~~dP~~~l 668 (1111)
T TIGR02102 598 DADGTPRTSF-GGGRLGTTHEMSRRILVDSIKYLVDEFKVDGFRFDMMGDHDAAS---I---EIAYKEAK--AINPNIIM 668 (1111)
T ss_pred CCCCCccccc-CCCCCCcCCHHHHHHHHHHHHHHHHhcCCcEEEEeccccCCHHH---H---HHHHHHHH--HhCcCEEE
Confidence 4555544322 36789999999999999999999999999999999998765442 1 11222222 35789999
Q ss_pred EecCCCCc---cccccCCCCC-c----chhhhhhhHHHHHHHH---------HHcCCCCcHHHHHHHhcCCcccccccCC
Q 011993 173 IAEPWDCR---GLYLVGKFPN-W----DRWAEWNGKYRDDLRK---------FIKGDPGMKGILATRISGSSDLYRVNKR 235 (473)
Q Consensus 173 i~E~~~~~---~~~~~~~~~~-~----~~~~~~~~~~~~~l~~---------~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 235 (473)
+||.|+.. ..+....++. + ...+.|++.+++.++. ++.|..+....+...+.+....+. ..
T Consensus 669 iGE~W~~~~g~~~~~~~~~~~~~~~~~~~ig~FnD~~Rd~irg~~~~~~~~gfi~G~~~~~~~l~~~i~g~~~~~~--~~ 746 (1111)
T TIGR02102 669 IGEGWRTYAGDEGDPVQAADQDWMKYTETVGVFSDDIRNELKSGFPNEGQPAFITGGARNVQGIFKNIKAQPHNFE--AD 746 (1111)
T ss_pred EEecccccCCCCcccccccchhhHhcCCcccEecHHHHHHHhcccccccccccccCCcccHHHHHHhhcCCccccc--cC
Confidence 99999862 1122221111 0 0124555555555552 222333333445555554433321 34
Q ss_pred CCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCce
Q 011993 236 KPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP 315 (473)
Q Consensus 236 ~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P 315 (473)
.|...|||+++||+.++.+++.+..+++..+++. .....++.|++++++|+++|+|
T Consensus 747 ~P~~~VnYV~aHDn~TL~D~l~~~~~~~~~~~e~------------------------~~~~~~r~rla~~llllSQGiP 802 (1111)
T TIGR02102 747 SPGDVVQYIAAHDNLTLHDVIAQSIKKDPKVAEN------------------------QEEIHRRIRLGNLMVLTSQGTA 802 (1111)
T ss_pred CcccEEEEEecCCCCchHhhhhhccccCcccccc------------------------hHHHHHHHHHHHHHHHHhCcHh
Confidence 7789999999999999999888766554332210 0112567788999999999999
Q ss_pred eeecccccccccCCC----------------------------------CCCCCCCCCCCCcccccccccc-----hhHH
Q 011993 316 MMLMGDEYGHTRYGN----------------------------------NNSYGHDTAINNFQWGQLETKK-----NSHY 356 (473)
Q Consensus 316 ~iy~G~E~g~~~~~~----------------------------------~~~~~~~~~r~~~~W~~~~~~~-----~~l~ 356 (473)
+||+|||++.++.++ .++|..+...+.++|+...... ..++
T Consensus 803 fi~aGqEf~RTK~gnnn~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nSY~s~d~iN~lDW~~~~~~~~~~~~~~~~ 882 (1111)
T TIGR02102 803 FIHSGQEYGRTKQFRNPDYRTPVSEDKVPNKSTLMTDVDGNPFRYPYFIHDSYDSSDAINRFDWEKATDADAYPINNKTR 882 (1111)
T ss_pred hhhcchhhhcccCCCcccccccccccccccccccccccccccccccccccccccCCCccceecccccccccccchhHHHH
Confidence 999999999998876 4667778889999999875332 5899
Q ss_pred HHHHHHHHHHhcccCCCCcCCCCCC-cceeecc----ccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCC-CC
Q 011993 357 RFFSEVIKFRQSRRVFGREDFLNIN-DVTWHED----NWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP-PP 430 (473)
Q Consensus 357 ~~~~~L~~lR~~~p~l~~g~~~~~~-~~~~~~~----~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~-~~ 430 (473)
+|+|.||+|||++|+|+.++...+. .+.|+.. .| ...+.+++|......++.++|++|.+.+++++.||.. +.
T Consensus 883 ~y~~~LI~lRk~~~~fr~~~~~~i~~~v~~~~~~g~~~~-~~~~~~ia~~~~~~~~~~~~V~~Na~~~~~~~~lp~~~~~ 961 (1111)
T TIGR02102 883 DYTAGLIELRRSTDAFRLGSKALVDRKVTLITIPGQNEI-EEEDLVVAYQIVATNGDIYAVFVNADDKARTLTLGEDYAH 961 (1111)
T ss_pred HHHHHHHHHHhcCccccccchhhhcCcEEEECCCCCccc-ccCCcEEEEEEecCCCCeEEEEECCCCCCEEEECCCCccc
Confidence 9999999999999999999986554 4677643 23 3457899999876545689999999999999999873 22
Q ss_pred CCCcEEEEeCCCCCCCCCCC-CCCCCCCCeEEEcCCeEEEEEe
Q 011993 431 KRQWFRVVDTNLESPDDIVP-EGAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 431 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~l~p~~~~vl~~ 472 (473)
...|..+++........... .+.......|+|+|.+++||..
T Consensus 962 ~~~~~v~~~~~~~g~~~~~~~~~~~~~~~~~~v~~~s~~V~~~ 1004 (1111)
T TIGR02102 962 LTVGEVVVDAEQAGVTGIAEPKGVELTAEGLKLDPLTAAVVRV 1004 (1111)
T ss_pred ccceEEEEcccccCcccccccccccccCCeEEEcCcEEEEEEe
Confidence 34788888764432211111 1122345689999999999975
No 11
>PRK14706 glycogen branching enzyme; Provisional
Probab=100.00 E-value=2.6e-52 Score=434.80 Aligned_cols=404 Identities=19% Similarity=0.305 Sum_probs=275.1
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||.+..| ..++|||++++||+|+++|||+ +|||+||++||++||+||||+|+||++. ++.++..
T Consensus 188 mPv~e~~-----~~~~wGY~~~~~~~~~~~~g~~--------~~~~~lv~~~H~~gi~VilD~v~nH~~~---~~~~l~~ 251 (639)
T PRK14706 188 LGVMEHP-----FDGSWGYQVTGYYAPTSRLGTP--------EDFKYLVNHLHGLGIGVILDWVPGHFPT---DESGLAH 251 (639)
T ss_pred cchhcCC-----CCCCCCcCcccccccccccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCc---chhhhhc
Confidence 5555444 3468999999999999999995 9999999999999999999999999998 5555555
Q ss_pred ccCCCCccceeecCC-CCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCC-CCC------
Q 011993 81 FRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD-GSP------ 151 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~~-~~~------ 151 (473)
+++. +.|+..++. +....+.. ..+|+.+|+||++|++++++|++++||||||+|++.+| +.++. +.|
T Consensus 252 ~dg~--~~y~~~~~~~g~~~~w~~--~~~~~~~~eVr~~l~~~~~~W~~e~~iDG~R~Dav~~~ly~d~~~~~~~~~~~g 327 (639)
T PRK14706 252 FDGG--PLYEYADPRKGYHYDWNT--YIFDYGRNEVVMFLIGSALKWLQDFHVDGLRVDAVASMLYLDFSRTEWVPNIHG 327 (639)
T ss_pred cCCC--cceeccCCcCCcCCCCCC--cccCCCCHHHHHHHHHHHHHHHHHhCCCeEEEeeehheeecccCcccccccccC
Confidence 5443 334333333 32223322 34899999999999999999999999999999987664 44431 111
Q ss_pred ----CCCHHHHHHHHhc--cccCCceEEecCCCCccccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcC
Q 011993 152 ----LNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISG 225 (473)
Q Consensus 152 ----~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~ 225 (473)
..+..+|+++++. ..+|++++|||.+...............+.+.|++.+++.+..++..+..........++.
T Consensus 328 g~~n~~a~~fl~~ln~~v~~~~p~~~~iAE~~~~~~~v~~~~~~G~gFD~~w~~~w~~~~l~~~~~~~~~r~~~~~~lt~ 407 (639)
T PRK14706 328 GRENLEAIAFLKRLNEVTHHMAPGCMMIAEESTSFPGVTVPTPYGLGFDYKWAMGWMNDTLAYFEQDPLWRKYHHHKLTF 407 (639)
T ss_pred CcccHHHHHHHHHHHHHHHHhCCCeEEEEECCCCCcCcccccCCCCccccEeccHHHHHHHHHhccCchhhhhchhccch
Confidence 2346788887763 4579999999988653222211111223449999999998888776554433211111221
Q ss_pred CcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 011993 226 SSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFH 305 (473)
Q Consensus 226 ~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 305 (473)
. ..+. .. ....+++|||+.+........ .++|.. ..+.+.+|+++
T Consensus 408 ~-~~y~----~~-e~~il~~SHDev~~~k~sl~~-----------------------k~~g~~------~~~~a~~r~~~ 452 (639)
T PRK14706 408 F-NVYR----TS-ENYVLAISHDEVVHLKKSMVM-----------------------KMPGDW------YTQRAQYRAFL 452 (639)
T ss_pred h-hhhh----cc-ccEecCCCCccccCCccchHh-----------------------HcCCCH------HHHHHHHHHHH
Confidence 1 1111 00 112367999997653211000 011210 11256688999
Q ss_pred HHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCCCcce
Q 011993 306 LALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVT 384 (473)
Q Consensus 306 ~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~ 384 (473)
++++++||+|+||||+|+|+.+.. ..+.+|+|..... ....+.+|+|+|++||+++|+|+.|+... ..+.
T Consensus 453 ~~~~t~PG~pLiFmG~EfG~~~ew--------~~~~~l~W~l~~~~~~~~l~~~~k~L~~L~k~~paL~~gd~~~-~~f~ 523 (639)
T PRK14706 453 AMMWTTPGKKLLFMGQEFAQGTEW--------NHDASLPWYLTDVPDHRGVMNLVRRLNQLYRERPDWHRGDKRE-EGLY 523 (639)
T ss_pred HHHHhCCCCcEEEeccccCCCCCC--------CcccCCCCcccCCHHHHHHHHHHHHHHHHHHhCHHHhhCCCCC-CCeE
Confidence 999999999999999999975432 3467899987642 33579999999999999999999988654 2334
Q ss_pred eeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCC---cEEEECCCCCCCCCcEEEEeCCCCCCCCCCC--CC------
Q 011993 385 WHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDF---FVKVSLPPPPPKRQWFRVVDTNLESPDDIVP--EG------ 452 (473)
Q Consensus 385 ~~~~~~~~~~~~v~a~~R~~~~-~~~~lvv~N~~~~---~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~------ 452 (473)
|+... +.+++|+||.|..++ ++.++||+||++. ...+.+|. .+.|+++++|+.....+... ..
T Consensus 524 wi~~~--d~~~~VlaF~R~~~~~~~~vlvV~Nfs~~~~~~y~ig~p~---~g~~~~i~nsd~~~~gG~g~~n~~~~~~~~ 598 (639)
T PRK14706 524 WVSAD--DTDNSVYAYVRRDSESGAWSLAVANLTPVYREQYRIGVPQ---GGEYRVLLSTDDGEYGGFGTQQPDLMASQE 598 (639)
T ss_pred EEEee--cCCCCEEEEEEecCCCCeeEEEEEeCCCCCcCCeEECCCC---CCeEEEEEcCCccccCCCCCCCCceecccc
Confidence 43221 356789999999864 3459999999984 56666665 68999999998765433210 00
Q ss_pred ---CCCCCCeEEEcCCeEEEEEeC
Q 011993 453 ---AAGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 453 ---~~~~~~~i~l~p~~~~vl~~~ 473 (473)
.......|+|||++++||+.+
T Consensus 599 ~~~g~~~si~i~lp~~~~~~~~~~ 622 (639)
T PRK14706 599 GWHGQPHSLSLNLPPSSVLILEFV 622 (639)
T ss_pred ccCCCccEEEEEeCCcEEEEEEEC
Confidence 011244789999999999853
No 12
>PRK12313 glycogen branching enzyme; Provisional
Probab=100.00 E-value=7.9e-52 Score=437.14 Aligned_cols=407 Identities=20% Similarity=0.283 Sum_probs=266.9
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||++.+|. .++|||+++|||+|||+|||+ +|||+||++||++||+||||+|+||++. ++.++..
T Consensus 191 ~Pi~~~~~-----~~~~GY~~~~y~~i~~~~Gt~--------~d~k~lv~~~H~~Gi~VilD~V~nH~~~---~~~~~~~ 254 (633)
T PRK12313 191 MPLMEHPL-----DGSWGYQLTGYFAPTSRYGTP--------EDFMYLVDALHQNGIGVILDWVPGHFPK---DDDGLAY 254 (633)
T ss_pred CchhcCCC-----CCCCCCCCcCcCcCCCCCCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC---Ccccccc
Confidence 67777664 357999999999999999995 9999999999999999999999999998 5544444
Q ss_pred ccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCC--CCCC-----
Q 011993 81 FRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD--GSPL----- 152 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~~--~~~~----- 152 (473)
|++. +.|+..++.......++ .++||+.||+||++|++++++|+++|||||||||++.++ ..+.. +.|.
T Consensus 255 ~~~~--~~~~~~~~~~~~~~~w~-~~~~n~~~~~vr~~l~~~~~~W~~~~~iDG~R~D~~~~~~~~d~~~~~~~~~~~~~ 331 (633)
T PRK12313 255 FDGT--PLYEYQDPRRAENPDWG-ALNFDLGKNEVRSFLISSALFWLDEYHLDGLRVDAVSNMLYLDYDEEGEWTPNKYG 331 (633)
T ss_pred cCCC--cceeecCCCCCcCCCCC-CcccCCCCHHHHHHHHHHHHHHHHHhCCcEEEEcChhhhhhcccccccCcCCcccC
Confidence 4432 23332333222221122 468999999999999999999999999999999988644 33321 1111
Q ss_pred -----CCHHHHHHHHhc--cccCCceEEecCCCCccccccCCCC-CcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhc
Q 011993 153 -----NAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRIS 224 (473)
Q Consensus 153 -----~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~ 224 (473)
...++++++++. ..+|++++|||.+...........+ .+.+.+.|++.+++.+..++.............+.
T Consensus 332 ~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (633)
T PRK12313 332 GRENLEAIYFLQKLNEVVYLEHPDVLMIAEESTAWPKVTGPVEVGGLGFDYKWNMGWMNDTLRYFEEDPIYRKYHHNLLT 411 (633)
T ss_pred CCCCcHHHHHHHHHHHHHHHHCCCeEEEEECCCCCccccccccCCCCCcCceeCcHHHHHHHHHhhhCccccccccccch
Confidence 235678887763 4679999999987544222211111 12244889999988888877654322211101111
Q ss_pred CCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHH
Q 011993 225 GSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNF 304 (473)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a 304 (473)
... .+. . ....++++|||+.+...... .. ...|. ......++|++
T Consensus 412 ~~~-~~~--~---~e~~~l~~sHD~~~~g~~~~---------------------~~--~~~g~------~~~~~~~~r~~ 456 (633)
T PRK12313 412 FSF-MYA--F---SENFVLPFSHDEVVHGKKSL---------------------MH--KMPGD------RWQQFANLRLL 456 (633)
T ss_pred HHH-hhh--h---hcccccCCCCcccccCCccH---------------------HH--hcCCC------HHHHHHHHHHH
Confidence 000 000 0 01224668999853211000 00 00111 01125678999
Q ss_pred HHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCCCcc
Q 011993 305 HLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDV 383 (473)
Q Consensus 305 ~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~ 383 (473)
++++|++||+||||||+|+|+.+... .+.+|+|+.... ....+++|||+|++||+++|+|+.|+... ..+
T Consensus 457 ~~~~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~r~Li~LRr~~paL~~~d~~~-~~~ 527 (633)
T PRK12313 457 YTYMITHPGKKLLFMGSEFGQFLEWK--------HDESLEWHLLEDPMNAGMQRFTSDLNQLYKDEPALWELDFSP-DGF 527 (633)
T ss_pred HHHHHhCCCCcEeecccccccCccCC--------ccCCCCccccCChhHHHHHHHHHHHHHHHHhChHhhcccCCC-CCc
Confidence 99999999999999999999977432 246899987542 34689999999999999999999776522 222
Q ss_pred eeeccccCCCCCcEEEEEEecC-CCCeEEEEEeCCCCcEE-EECCCCCCCCCcEEEEeCCCCCCCCCCCC---CC-----
Q 011993 384 TWHEDNWDNYDSKFLAFTLHDN-NGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESPDDIVPE---GA----- 453 (473)
Q Consensus 384 ~~~~~~~~~~~~~v~a~~R~~~-~~~~~lvv~N~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~---~~----- 453 (473)
.|...+ ...++|++|.|+.+ +++.++||+|+++.++. +.++.+. ++.|+++++++.....+.... ..
T Consensus 528 ~~l~~~--~~~~~vlaf~R~~~~~~~~llvv~N~s~~~~~~y~i~~p~-~g~~~~ilnsd~~~ygG~~~~~~~~~~~~~~ 604 (633)
T PRK12313 528 EWIDAD--DADQSVLSFIRKGKNKGDFLVVVFNFTPVEREDYRIGVPV-AGIYEEILNTDSEEFGGSGKGNNGTVKAQEG 604 (633)
T ss_pred EEEECc--CCCCCEEEEEEeCCCCCceEEEEEeCCCCcccceeECCCC-CCeEEEEEcCCchhcCCCCcCCCCceeeccc
Confidence 333211 23567999999872 27889999999986443 3333332 579999999987654322110 00
Q ss_pred ----CCCCCeEEEcCCeEEEEEeC
Q 011993 454 ----AGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 454 ----~~~~~~i~l~p~~~~vl~~~ 473 (473)
......|.|||++++||+.+
T Consensus 605 ~~~g~~~~~~i~ip~~s~~v~~~~ 628 (633)
T PRK12313 605 PWHGRPQSLTLTLPPLGALVLKPK 628 (633)
T ss_pred ccCCCCCEEEEEeCCCEEEEEEEc
Confidence 01234789999999999864
No 13
>PRK12568 glycogen branching enzyme; Provisional
Probab=100.00 E-value=4.3e-51 Score=424.03 Aligned_cols=403 Identities=19% Similarity=0.320 Sum_probs=286.4
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||.+..|. .++|||++++||+|+|+||++ ++|++||++||++||+||||+|+||++. +..-+..
T Consensus 290 mPi~e~~~-----~~~wGY~~~~~~a~~~~~G~~--------~dfk~lV~~~H~~Gi~VIlD~V~nH~~~---d~~~l~~ 353 (730)
T PRK12568 290 LPITEHPF-----GGSWGYQPLGLYAPTARHGSP--------DGFAQFVDACHRAGIGVILDWVSAHFPD---DAHGLAQ 353 (730)
T ss_pred CccccCCC-----CCCCCCCCCcCCccCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCc---ccccccc
Confidence 67766553 468999999999999999995 9999999999999999999999999998 4333334
Q ss_pred ccCCCCccceeecCC-CCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCC---CCCCC---
Q 011993 81 FRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGT---DGSPL--- 152 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~---~~~~~--- 152 (473)
|++. ..|...++. +....|. . ..+|+.+|+|+++|++++++|+++|||||||+||+..+ +.+. .|.|.
T Consensus 354 fdg~--~~Ye~~d~~~g~~~~W~-~-~~~N~~~peVr~~li~~a~~Wl~eyhIDG~R~DAva~mly~d~~r~~g~w~pn~ 429 (730)
T PRK12568 354 FDGA--ALYEHADPREGMHRDWN-T-LIYNYGRPEVTAYLLGSALEWIEHYHLDGLRVDAVASMLYRDYGRAEGEWVPNA 429 (730)
T ss_pred CCCc--cccccCCCcCCccCCCC-C-eecccCCHHHHHHHHHHHHHHHHHhCceEEEEcCHhHhhhhccccccccccccc
Confidence 5433 233333332 2222222 2 26899999999999999999999999999999976554 4432 13442
Q ss_pred -------CCHHHHHHHHhc--cccCCceEEecCCCCccccccCCC-CCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHH
Q 011993 153 -------NAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGKF-PNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATR 222 (473)
Q Consensus 153 -------~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (473)
.+.++++++++. ...|++++|||.+..-........ ....+...||+.+++.+..++..++..+..-...
T Consensus 430 ~gg~en~ea~~Fl~~ln~~v~~~~P~~~~IAEest~~p~vt~p~~~gGlGFd~kwn~gwm~d~l~y~~~dp~~r~~~h~~ 509 (730)
T PRK12568 430 HGGRENLEAVAFLRQLNREIASQFPGVLTIAEESTAWPGVTAPISDGGLGFTHKWNMGWMHDTLHYMQRDPAERAHHHSQ 509 (730)
T ss_pred cCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCccccccccCCCCCcCcEeCChhHHHHHHHHhhCchhhhhhhhh
Confidence 235688888773 568999999997543321211111 1122449999999999999999888766655566
Q ss_pred hcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 011993 223 ISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMK 302 (473)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 302 (473)
|+.+... .. ...+.+..|||+..... -|-...++|.. .-+...+|
T Consensus 510 ltf~~~y-~~-----~e~fvlp~SHDEvvhgk-----------------------~sl~~kmpGd~------~~k~a~lR 554 (730)
T PRK12568 510 LTFGLVY-AF-----SERFVLPLSHDEVVHGT-----------------------GGLLGQMPGDD------WRRFANLR 554 (730)
T ss_pred hhhhhhh-hh-----hccEeccCCCcccccCc-----------------------hhhhhcCCCCH------HHHHHHHH
Confidence 6643322 10 12334678999953211 11112234442 22367789
Q ss_pred HHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc-ccchhHHHHHHHHHHHHhcccCCCCcCCCCCC
Q 011993 303 NFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNIN 381 (473)
Q Consensus 303 ~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~-~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~ 381 (473)
+++++|++.||.|+||||+|+|....++. ..+++|...+ +.+..+..+||+|++||+++|+|+..+... .
T Consensus 555 ~~~~~~~~~PGkkLlFmG~Efgq~~ew~~--------~~~ldW~ll~~~~h~~~~~~~~dLn~ly~~~paL~~~d~~~-~ 625 (730)
T PRK12568 555 AYLALMWAHPGDKLLFMGAEFGQWADWNH--------DQSLDWHLLDGARHRGMQQLVGDLNAALRRTPALYRGTHRA-D 625 (730)
T ss_pred HHHHHHHhCCCcceeeCchhhCCcccccC--------CCCccccccCChhHHHHHHHHHHHHHHHHhChhhhcccCCC-C
Confidence 99999999999999999999999886543 3578999865 345689999999999999999999988665 4
Q ss_pred cceeeccccCCCCCcEEEEEEecCC--CCeEEEEEeCCCCc---EEEECCCCCCCCCcEEEEeCCCCCCCCCCCC--C--
Q 011993 382 DVTWHEDNWDNYDSKFLAFTLHDNN--GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESPDDIVPE--G-- 452 (473)
Q Consensus 382 ~~~~~~~~~~~~~~~v~a~~R~~~~--~~~~lvv~N~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-- 452 (473)
.+.|+..+ +...+|++|.|+.++ ++.++||+||++.+ ..+.+|. .+.|+++++|+.....+.... +
T Consensus 626 gf~wi~~~--d~~~sv~af~R~~~~~~~~~v~vV~Nft~~~~~~Y~ig~p~---~G~~~eilNsd~~~ygG~~~~n~~~~ 700 (730)
T PRK12568 626 GFDWSVAD--DARNSVLAFIRHDPDGGGVPLLAVSNLTPQPHHDYRVGVPR---AGGWREILNTDSAHYGGSNLGNSGRL 700 (730)
T ss_pred CeEEEeCC--CCCCcEEEEEEecCCCCCCeEEEEECCCCCCccCeEECCCC---CCeEEEEEcCchhhhCCCCcCCCCce
Confidence 56777543 567789999999864 35699999999864 4565665 589999999987654322110 0
Q ss_pred --------CCCCCCeEEEcCCeEEEEEe
Q 011993 453 --------AAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 453 --------~~~~~~~i~l~p~~~~vl~~ 472 (473)
....+..|+|||.++++|+.
T Consensus 701 ~~~~~~~~g~~~s~~i~lppl~~~~~~~ 728 (730)
T PRK12568 701 ATEPTGMHGHAQSLRLTLPPLATIYLQA 728 (730)
T ss_pred eecccccCCCccEEEEEeCCCEEEEEEE
Confidence 01234479999999999985
No 14
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=100.00 E-value=2.1e-51 Score=430.90 Aligned_cols=403 Identities=19% Similarity=0.278 Sum_probs=267.0
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||++.+|. .++|||+++|||+|+|+|||+ +|||+||++||++||+||||+|+||++. ++..+..
T Consensus 177 ~Pi~e~~~-----~~~wGY~~~~y~~~~~~~Gt~--------~dlk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~ 240 (613)
T TIGR01515 177 LPVAEHPF-----DGSWGYQVTGYYAPTSRFGTP--------DDFMYFVDACHQAGIGVILDWVPGHFPK---DDHGLAE 240 (613)
T ss_pred CCcccCCC-----CCCCCCCcccCcccccccCCH--------HHHHHHHHHHHHCCCEEEEEecccCcCC---ccchhhc
Confidence 67777654 358999999999999999996 9999999999999999999999999998 6655555
Q ss_pred ccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCC---CCC-----
Q 011993 81 FRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD---GSP----- 151 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~~---~~~----- 151 (473)
|++. +.|+..++.......++ .+++|+.+|+||++|++++++|+++|||||||||++.++ ..+++ |+|
T Consensus 241 ~~~~--~~y~~~~~~~~~~~~w~-~~~~~~~~~~Vr~~l~~~~~~W~~ey~iDG~R~D~v~~~~~~~~~~~~~~~~~~~~ 317 (613)
T TIGR01515 241 FDGT--PLYEHKDPRDGEHWDWG-TLIFDYGRPEVRNFLVANALYWAEFYHIDGLRVDAVASMLYLDYSRDEGEWSPNED 317 (613)
T ss_pred cCCC--cceeccCCccCcCCCCC-CceecCCCHHHHHHHHHHHHHHHHHhCCcEEEEcCHHHhhhhcccccccccccccc
Confidence 5432 33443333222222222 468999999999999999999999999999999987654 22211 122
Q ss_pred -----CCCHHHHHHHHhc--cccCCceEEecCCCCccccccCCCC-CcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHh
Q 011993 152 -----LNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGKFP-NWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRI 223 (473)
Q Consensus 152 -----~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l 223 (473)
....++++++++. ..+|++++|||.+............ ...+.+.|++.+++.++.++.... ....+....
T Consensus 318 ~~~~~~~~~~fl~~~~~~v~~~~p~~~liaE~~~~~~~~~~~~~~gg~gfd~~w~~~~~~~~~~~~~~~~-~~~~~~~~~ 396 (613)
T TIGR01515 318 GGRENLEAVDFLRKLNQTVYEAFPGVVTIAEESTEWPGVTRPTDEGGLGFHYKWNMGWMHDTLDYMSTDP-VERQYHHQL 396 (613)
T ss_pred CCcCChHHHHHHHHHHHHHHHHCCCeEEEEEeCCCCccccccccCCcCCcCeeeCchHHHHHHHHHhhCh-hhHhhcccc
Confidence 1235688888763 4679999999976433222111110 112348888889888888775432 212221100
Q ss_pred cCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 011993 224 SGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKN 303 (473)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 303 (473)
......+. .. ....+++|||+.+...-.- .. .+.|. + .....++|+
T Consensus 397 ~~~~~~~~--~~---e~~~~~~sHD~~~~g~~~i----~~-------------------~~~g~---~---~~~~~~~r~ 442 (613)
T TIGR01515 397 ITFSMLYA--FS---ENFVLPLSHDEVVHGKKSL----LN-------------------KMPGD---Y---WQKFANYRA 442 (613)
T ss_pred ccHHHHHH--hh---hccccCCCCCCcccCcccH----HH-------------------hCCCc---h---HHHHHHHHH
Confidence 00000010 00 1123678899853211000 00 01111 1 011457889
Q ss_pred HHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc-ccchhHHHHHHHHHHHHhcccCCCCcCCCCCCc
Q 011993 304 FHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNIND 382 (473)
Q Consensus 304 a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~-~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~ 382 (473)
+++++|++||+||||||+|+|+.++.+ ...+|+|+... .....++++||+|++||+++|+|+.++... ..
T Consensus 443 ~~~~~~t~pG~plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~L~~Lr~~~paL~~~~~~~-~~ 513 (613)
T TIGR01515 443 LLGYMWAHPGKKLLFMGSEFAQGSEWN--------DTEQLDWHLLSFPMHQGVSVFVRDLNRTYQKSKALYEHDFDP-QG 513 (613)
T ss_pred HHHHHHhCCCCCEEEcchhcCcCCCCC--------CCccCCCccccCcccHHHHHHHHHHHHHHhhCHHhhccCCCC-Cc
Confidence 999999999999999999999977532 24689997643 235689999999999999999999888754 22
Q ss_pred ceeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCcEE---EECCCCCCCCCcEEEEeCCCCCCCCCCC---CCC--
Q 011993 383 VTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFFVK---VSLPPPPPKRQWFRVVDTNLESPDDIVP---EGA-- 453 (473)
Q Consensus 383 ~~~~~~~~~~~~~~v~a~~R~~~~-~~~~lvv~N~~~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-- 453 (473)
+.|.... ...++|++|.|+..+ ++.++||+|+++.+.. +.+|. .+.|+++++|+.....+... ...
T Consensus 514 ~~~~~~~--~~~~~vlaf~R~~~~~~~~~~vv~N~~~~~~~~Y~i~~p~---~g~~~~il~Sd~~~~gG~g~~~~~~~~~ 588 (613)
T TIGR01515 514 FEWIDVD--DDEQSVFSFIRRAKKHGEALVIICNFTPVVRHQYRVGVPQ---PGQYREVLNSDSETYGGSGQGNKGPLSA 588 (613)
T ss_pred eEEEEcc--cCCCCEEEEEEecCCCCCeEEEEEeCCCCCccceEeCCCC---CCeEEEEEeCChhhcCCCCcCCCCceec
Confidence 3333211 246689999998753 5679999999987544 65554 47999999987754221100 000
Q ss_pred -------CCCCCeEEEcCCeEEEEE
Q 011993 454 -------AGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 454 -------~~~~~~i~l~p~~~~vl~ 471 (473)
......|+|||++++||+
T Consensus 589 ~~~~~~g~~~~i~i~iP~~~~~~~~ 613 (613)
T TIGR01515 589 EEGALHGRPCSLTMTLPPLATSWLR 613 (613)
T ss_pred cccccCCCCCEEEEEeCCcEEEEeC
Confidence 112347899999999974
No 15
>PRK05402 glycogen branching enzyme; Provisional
Probab=100.00 E-value=1e-50 Score=433.32 Aligned_cols=403 Identities=19% Similarity=0.322 Sum_probs=265.7
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||.+.+|. .++|||+++||++|+|+|||+ +|||+||++||++||+||||+|+||++. ++.++..
T Consensus 286 ~Pi~e~~~-----~~~~GY~~~~y~ai~~~~Gt~--------~dfk~lV~~~H~~Gi~VilD~V~NH~~~---~~~~~~~ 349 (726)
T PRK05402 286 LPIAEHPF-----DGSWGYQPTGYYAPTSRFGTP--------DDFRYFVDACHQAGIGVILDWVPAHFPK---DAHGLAR 349 (726)
T ss_pred CCcccCCC-----CCCCCCCcccCCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC---Cccchhc
Confidence 67766654 358999999999999999995 9999999999999999999999999998 5555555
Q ss_pred ccCCCCccceeecC-CCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCC---CCCC---
Q 011993 81 FRGIDNKVYYMVDG-TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD---GSPL--- 152 (473)
Q Consensus 81 ~~~~~~~~~~~~~~-~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~~---~~~~--- 152 (473)
|++. +.|+..++ .+....++ ...+|+.||+|+++|++++++|++++||||||||++.++ ..+.. |.|.
T Consensus 350 ~~~~--~~y~~~~~~~~~~~~w~--~~~~n~~~~~v~~~l~~~~~~W~~e~~iDG~R~D~v~~~~~~~~~~~~g~~~~~~ 425 (726)
T PRK05402 350 FDGT--ALYEHADPREGEHPDWG--TLIFNYGRNEVRNFLVANALYWLEEFHIDGLRVDAVASMLYLDYSRKEGEWIPNI 425 (726)
T ss_pred cCCC--cceeccCCcCCccCCCC--CccccCCCHHHHHHHHHHHHHHHHHhCCcEEEECCHHHhhhcccccccccccccc
Confidence 5433 23333222 23333333 247899999999999999999999999999999987554 33321 2221
Q ss_pred -------CCHHHHHHHHhc--cccCCceEEecCCCCccccccCCC-CCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHH
Q 011993 153 -------NAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVGKF-PNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATR 222 (473)
Q Consensus 153 -------~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (473)
...++++++++. ..+|++++|||.+........... ....+.+.||+.+++.+..++.............
T Consensus 426 ~~~~~~~~~~~fl~~~~~~~~~~~p~~~liaE~~~~~~~~~~~~~~~G~gfd~~wn~~~~~~~l~~~~~~~~~~~~~~~~ 505 (726)
T PRK05402 426 YGGRENLEAIDFLRELNAVVHEEFPGALTIAEESTAWPGVTRPTEEGGLGFGYKWNMGWMHDTLDYMERDPIYRKYHHNE 505 (726)
T ss_pred ccCcCCHHHHHHHHHHHHHHHHHCCCeEEEEECCCCCcCccccccCCCCCCCceecCCcchHHHHHHhhCcccccccccc
Confidence 135678877763 467999999996532211111100 0112337788888776666664432211110011
Q ss_pred hcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHH
Q 011993 223 ISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMK 302 (473)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 302 (473)
+... ..+. .. ...++++|||+.+.....-. ..+.|. ......++|
T Consensus 506 ~~~~-~~~~--~~---e~~~l~~sHD~~~~g~~~l~-----------------------~~~~g~------~~~~~~~lr 550 (726)
T PRK05402 506 LTFS-LLYA--YS---ENFVLPLSHDEVVHGKGSLL-----------------------GKMPGD------DWQKFANLR 550 (726)
T ss_pred hhHH-HhHh--hh---ccccCCCCCceeeeCcccHH-----------------------hhCCCC------HHHHHHHHH
Confidence 1100 0000 00 12346789998643211000 001111 011256688
Q ss_pred HHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc-ccchhHHHHHHHHHHHHhcccCCCCcCCCCCC
Q 011993 303 NFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-TKKNSHYRFFSEVIKFRQSRRVFGREDFLNIN 381 (473)
Q Consensus 303 ~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~-~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~ 381 (473)
++++++|++||+||||||||+|+.+... .+.+|+|+..+ .....+++|||+|++||+++|+|+.|+... .
T Consensus 551 l~~~~~~t~pG~Plif~G~E~g~~~~~~--------~~~~l~W~~~~~~~~~~l~~~~k~Li~Lr~~~~aL~~g~~~~-~ 621 (726)
T PRK05402 551 AYYGYMWAHPGKKLLFMGGEFGQGREWN--------HDASLDWHLLDFPWHRGVQRLVRDLNHLYRAEPALHELDFDP-E 621 (726)
T ss_pred HHHHHHHHCCCcCEeeCchhcCCCCCCC--------ccCcCCccccCCcchHHHHHHHHHHHHHHHhChhhhccccCc-C
Confidence 9999999999999999999999998542 25789998753 234689999999999999999999887654 2
Q ss_pred cceeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCCCCc---EEEECCCCCCCCCcEEEEeCCCCCCCCCCC--CCCC-
Q 011993 382 DVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAHDFF---VKVSLPPPPPKRQWFRVVDTNLESPDDIVP--EGAA- 454 (473)
Q Consensus 382 ~~~~~~~~~~~~~~~v~a~~R~~~~-~~~~lvv~N~~~~~---~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~- 454 (473)
...|...+ ...++|++|.|..++ ++.++||+|+++.+ ..+.+|. .+.|+++++++.....+... ....
T Consensus 622 ~~~~~~~~--~~~~~vlaf~R~~~~~~~~vlvv~N~~~~~~~~y~i~~p~---~g~~~~ilnsd~~~~gg~~~~~~~~~~ 696 (726)
T PRK05402 622 GFEWIDAD--DAENSVLSFLRRGKDDGEPLLVVCNFTPVPRHDYRLGVPQ---AGRWREVLNTDAEHYGGSNVGNGGGVH 696 (726)
T ss_pred CeeEEecc--cCCCCEEEEEEecCCCCCeEEEEEeCCCCcccceEECCCC---CCeEEEEEcCcchhhCCCCCCCCCcee
Confidence 23333211 245689999998653 58899999999765 3444443 57999999998765432211 0001
Q ss_pred ---------CCCCeEEEcCCeEEEEEe
Q 011993 455 ---------GTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 455 ---------~~~~~i~l~p~~~~vl~~ 472 (473)
.....|+|||++++||+.
T Consensus 697 ~~~~~~~g~~~~~~i~lp~~~~~v~~~ 723 (726)
T PRK05402 697 AEEVPWHGRPHSLSLTLPPLATLILKP 723 (726)
T ss_pred ccccccCCCCCEEEEEeCCCEEEEEEE
Confidence 123479999999999985
No 16
>PRK09505 malS alpha-amylase; Reviewed
Probab=100.00 E-value=1.2e-51 Score=430.16 Aligned_cols=325 Identities=16% Similarity=0.219 Sum_probs=219.2
Q ss_pred CCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCC---CCCCCccccc-------cC
Q 011993 14 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA---DDANPYTTSF-------RG 83 (473)
Q Consensus 14 ~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~---~~~~~~~~~~-------~~ 83 (473)
.+||||++.||+.|||+|||+ +||++||++||++||+||||+|+||++.. +..+.|++.. ..
T Consensus 271 ~~yhgY~~~D~~~id~~~Gt~--------~dfk~Lv~~aH~~Gi~VilD~V~NH~~~~~~~d~~~~~f~~~~~~~~~~~~ 342 (683)
T PRK09505 271 YAYHGYYTLDWTKLDANMGTE--------ADLRTLVDEAHQRGIRILFDVVMNHTGYATLADMQEFQFGALYLSGDENKK 342 (683)
T ss_pred CCCCCCCccccccCCCCCCCH--------HHHHHHHHHHHHCCCEEEEEECcCCCcccccccccccchhhhhhhcccccc
Confidence 489999999999999999995 99999999999999999999999999952 1112222221 00
Q ss_pred CCCccceeec-----------------CCCCccccc------------------------CCcCCCCCC-----------
Q 011993 84 IDNKVYYMVD-----------------GTGQLLNYA------------------------GCGNTLNCN----------- 111 (473)
Q Consensus 84 ~~~~~~~~~~-----------------~~~~~~~~~------------------------~~~~dln~~----------- 111 (473)
.....|+.|. ....+..++ ...||||..
T Consensus 343 ~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~wwg~~w~~~~~~~~~~~~~~~~~~~l~~LPdl~te~~~~~~lp~f~ 422 (683)
T PRK09505 343 TLGERWSDWQPAAGQNWHSFNDYINFSDSTAWDKWWGKDWIRTDIGDYDNPGFDDLTMSLAFLPDIKTESTQASGLPVFY 422 (683)
T ss_pred ccCcccccccccccccccccccccccCCccccccccccccccccccccccccccccccccccCCcccccCccccccchhh
Confidence 0111221110 000011110 124566554
Q ss_pred ------------CHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHH----HHh---c--cccCCc
Q 011993 112 ------------HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRA----IAK---D--AILSRC 170 (473)
Q Consensus 112 ------------np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~----~~~---~--~~~~~~ 170 (473)
||+|+++|++++++|++++||||||||+|+||+.++ |....+.+++ +++ + ...+++
T Consensus 423 ~~~p~~~~~~~~n~~Vr~yL~~~ik~Wv~e~GIDGfRlDaakhV~~~F---W~~~~~~~~~~l~~~k~~~~d~~~~~~~~ 499 (683)
T PRK09505 423 ANKPDTRAKAIDGYTPRDYLTHWLSQWVRDYGIDGFRVDTAKHVELPA---WQQLKQEASAALAEWKKANPDKALDDAPF 499 (683)
T ss_pred hcCcccccccccCHHHHHHHHHHHHHHHHhcCCCEEEEechHhCCHHH---HHHHHHHHHHHHHHHHHhccccccccCCe
Confidence 569999999999999988999999999999998765 5444333322 222 1 123469
Q ss_pred eEEecCCCCc---cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEec
Q 011993 171 KIIAEPWDCR---GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAH 247 (473)
Q Consensus 171 ~li~E~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nH 247 (473)
+++||+|... ..+....++ +.+|+.+...+....... ..+.......... ......++|++||
T Consensus 500 ~~vGEvw~~~~~~~~y~~~~fD-----sv~NF~~~~~~~~~~~~~----~~l~~~~~~~~~~-----~~~~~~l~FLdNH 565 (683)
T PRK09505 500 WMTGEAWGHGVMKSDYYRHGFD-----AMINFDYQEQAAKAVDCL----AQMDPTYQQMAEK-----LQDFNVLSYLSSH 565 (683)
T ss_pred EEEEEecCCchhhHHHHhhcCc-----cccCchHHHHHHHHHHHH----HHHHHHHHHHhhh-----cCccceeecccCC
Confidence 9999999654 233334444 667777665544332111 1111111100000 0223567999999
Q ss_pred CCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeeccccccccc
Q 011993 248 DGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTR 327 (473)
Q Consensus 248 D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~ 327 (473)
|+.|+.+.... ..++++|++++|++||+|+||||||+||.+
T Consensus 566 Dt~Rf~s~~~~---------------------------------------~~~~klAaall~tlpGiP~IYYGdEiGm~g 606 (683)
T PRK09505 566 DTRLFFEGGQS---------------------------------------YAKQRRAAELLLLAPGAVQIYYGDESARPF 606 (683)
T ss_pred ChhhhhhhcCc---------------------------------------hHHHHHHHHHHHhCCCCcEEEechhhCccC
Confidence 99887443210 235788999999999999999999999986
Q ss_pred CCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCC
Q 011993 328 YGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNG 407 (473)
Q Consensus 328 ~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~ 407 (473)
... ........|.+|+|........+++++||+|++||++||+|+.|+++.+ ..+.+++|.|... +
T Consensus 607 g~~-g~DP~~~~R~~M~W~~~~~~~~~Ll~~~kkLi~LRk~~pAL~~G~~~~l------------~~~~~~aF~R~~~-~ 672 (683)
T PRK09505 607 GPT-GSDPLQGTRSDMNWQEVSGKSAALLAHWQKLGQFRARHPAIGAGKQTTL------------SLKQYYAFVREHG-D 672 (683)
T ss_pred CCC-CCCCcccccccCCccccccchHHHHHHHHHHHHHHhhCHHhhCCceEEe------------ccCCEEEEEEEeC-C
Confidence 321 0111124789999987554567899999999999999999999987654 3468999999886 8
Q ss_pred CeEEEEEeC
Q 011993 408 ADIYLAFNA 416 (473)
Q Consensus 408 ~~~lvv~N~ 416 (473)
++++||+|-
T Consensus 673 d~vlVv~~~ 681 (683)
T PRK09505 673 DKVMVVWAG 681 (683)
T ss_pred CEEEEEEeC
Confidence 899999985
No 17
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=100.00 E-value=3.7e-51 Score=422.15 Aligned_cols=347 Identities=23% Similarity=0.386 Sum_probs=242.9
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||.+..|. .++|||+++||++|+|+|||+ +|||+||++||++||+||||+|+||++. ++.++..
T Consensus 131 ~Pi~~~~~-----~~~~GY~~~~~~~~~~~~G~~--------~e~k~lV~~aH~~Gi~VilD~V~NH~~~---~~~~~~~ 194 (542)
T TIGR02402 131 MPVAQFPG-----TRGWGYDGVLPYAPHNAYGGP--------DDLKALVDAAHGLGLGVILDVVYNHFGP---EGNYLPR 194 (542)
T ss_pred CccccCCC-----CCCCCCCccCccccccccCCH--------HHHHHHHHHHHHCCCEEEEEEccCCCCC---ccccccc
Confidence 67776654 368999999999999999995 9999999999999999999999999998 6766644
Q ss_pred ccCCCCccceeecCCCCcccccCCcCCCCCCCH---HHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHH
Q 011993 81 FRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHP---VVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPL 157 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np---~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~ 157 (473)
+. + ||.... ..+|++++|+.+| +|+++|++++++|+++|||||||||++.+|.... ...+
T Consensus 195 ~~----~-y~~~~~------~~~wg~~~n~~~~~~~~vr~~i~~~~~~W~~e~~iDGfR~D~~~~~~~~~------~~~~ 257 (542)
T TIGR02402 195 YA----P-YFTDRY------STPWGAAINFDGPGSDEVRRYILDNALYWLREYHFDGLRLDAVHAIADTS------AKHI 257 (542)
T ss_pred cC----c-cccCCC------CCCCCCccccCCCcHHHHHHHHHHHHHHHHHHhCCcEEEEeCHHHhcccc------HHHH
Confidence 42 2 554321 2566789999999 9999999999999999999999999999986431 2334
Q ss_pred HHHHHhc--cccCC---ceEEecCCCCccccccC-CCCCcchhhhhhhHHHHHHHHHHcCCC-Cc-------HHHHHHHh
Q 011993 158 IRAIAKD--AILSR---CKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDP-GM-------KGILATRI 223 (473)
Q Consensus 158 ~~~~~~~--~~~~~---~~li~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~-------~~~~~~~l 223 (473)
++++.+. ...|+ +++|||.|.....+... ......+.+.|++.+++.++.++.+.. +. ...+...|
T Consensus 258 l~~~~~~~~~~~p~~~~~~li~E~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~l~~~l 337 (542)
T TIGR02402 258 LEELAREVHELAAELRPVHLIAESDLNDPSLVTPREDGGYGLDAQWNDDFHHALHVLLTGERQGYYADFGDPLAALAKTL 337 (542)
T ss_pred HHHHHHHHHHHCCCCceEEEEEecCCCCCcccccccCCccceEEEECchHHHHHHHHhcCCcceeecccCcCHHHHHHHH
Confidence 5554442 34556 99999988544322221 111223458899999999999887653 22 22333333
Q ss_pred cCCcc------cc-----c--ccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCCh
Q 011993 224 SGSSD------LY-----R--VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDD 290 (473)
Q Consensus 224 ~~~~~------~~-----~--~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~ 290 (473)
..... .+ . .....+.++++|++|||+..-.. ..+
T Consensus 338 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~vnfl~nHD~~gn~~---------------------------------~~~ 384 (542)
T TIGR02402 338 RDGFVYDGEYSPFRGRPHGRPSGDLPPHRFVVFIQNHDQIGNRA---------------------------------LGE 384 (542)
T ss_pred HHhcccCccccccccccCCCCCCCCCHHHEEEEccCcccccccc---------------------------------hhh
Confidence 32100 00 0 00013467899999999731000 001
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCC------------------CC--------CC--CC-----
Q 011993 291 ASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN------------------NS--------YG--HD----- 337 (473)
Q Consensus 291 ~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~------------------~~--------~~--~~----- 337 (473)
|+......++++++++++|++||+||||||||+|+.++..- .. .. .+
T Consensus 385 Rl~~~~~~~~~~la~alllt~pGiP~Iy~GqE~g~~~~~~ff~d~~~~~l~~~v~~gr~~e~~~~~~~~~~~pdp~~~~~ 464 (542)
T TIGR02402 385 RLSQLLSPGSLKLAAALLLLSPYTPLLFMGEEYGATTPFQFFTDHPDPELAQAVREGRKKEFARFGWDPEDVPDPQDEET 464 (542)
T ss_pred hhhhcCCHHHHHHHHHHHHHcCCCceeeccHhhcCCCCCccccCCCCHHHHHHHHHhHHHHHHhcccccccCCCCCchhh
Confidence 11111224678999999999999999999999999985310 00 00 00
Q ss_pred CCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 011993 338 TAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 416 (473)
Q Consensus 338 ~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~ 416 (473)
..+++++|+.... ...+++++||+||+|||++|+|+.++...+.... ..++.++++.. + +++++|++|+
T Consensus 465 ~~~~~~~W~~~~~~~~~~~~~~yr~Li~lRk~~~~l~~~~~~~~~~~~-------~~~~~~~~~~~--~-~~~~~v~~N~ 534 (542)
T TIGR02402 465 FLRSKLDWAEAESGEHARWLAFYRDLLALRRELPVLLLPGARALEVVV-------DEDPGWVAVRF--G-RGELVLAANL 534 (542)
T ss_pred HhhccCCcccccccchHHHHHHHHHHHHHhccCccccCCCcccceeee-------cCCCCEEEEEE--C-CCeEEEEEeC
Confidence 2467889988652 4578999999999999999999988765542111 24577888883 3 6789999999
Q ss_pred CCCcEEE
Q 011993 417 HDFFVKV 423 (473)
Q Consensus 417 ~~~~~~~ 423 (473)
+++++.+
T Consensus 535 ~~~~~~~ 541 (542)
T TIGR02402 535 STSPVAV 541 (542)
T ss_pred CCCCcCC
Confidence 9877653
No 18
>PRK14705 glycogen branching enzyme; Provisional
Probab=100.00 E-value=9.2e-50 Score=432.94 Aligned_cols=405 Identities=20% Similarity=0.278 Sum_probs=281.8
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||.+..|. .+||||++++||+|+++|||+ +|||+||++||++||+||||+|+||++. +...+..
T Consensus 786 mPv~e~p~-----~~swGY~~~~y~ap~~ryGt~--------~dfk~lVd~~H~~GI~VILD~V~nH~~~---d~~~l~~ 849 (1224)
T PRK14705 786 MPVAEHPF-----GGSWGYQVTSYFAPTSRFGHP--------DEFRFLVDSLHQAGIGVLLDWVPAHFPK---DSWALAQ 849 (1224)
T ss_pred CccccCCC-----CCCCCCCccccCCcCcccCCH--------HHHHHHHHHHHHCCCEEEEEeccccCCc---chhhhhh
Confidence 67776664 368999999999999999995 9999999999999999999999999987 5434445
Q ss_pred ccCCCCccceeecCC-CCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCCC---CCCC---
Q 011993 81 FRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGTD---GSPL--- 152 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~-~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~~---~~~~--- 152 (473)
|++. +.|+..++. +....+ + ...+|+.+|+|+++|+++++||+++|||||||+|++..| +.|.. |.|.
T Consensus 850 fdg~--~~y~~~d~~~g~~~~W-g-~~~fn~~~~eVr~fli~~a~~Wl~eyhiDGfR~Dav~~mly~Dysr~~g~w~pn~ 925 (1224)
T PRK14705 850 FDGQ--PLYEHADPALGEHPDW-G-TLIFDFGRTEVRNFLVANALYWLDEFHIDGLRVDAVASMLYLDYSREEGQWRPNR 925 (1224)
T ss_pred cCCC--cccccCCcccCCCCCC-C-CceecCCCHHHHHHHHHHHHHHHHHhCCCcEEEeehhhhhhcccccccccccccc
Confidence 5543 344444443 333333 3 346899999999999999999999999999999987554 44432 4443
Q ss_pred -------CCHHHHHHHHhc--cccCCceEEecCCCCccccccC-CCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHH
Q 011993 153 -------NAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATR 222 (473)
Q Consensus 153 -------~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (473)
.+..+++++.+. ...|++++|||.+.....+... ......+.+.||+.+++.+..|+..++.....-...
T Consensus 926 ~gg~en~~ai~fl~~ln~~v~~~~p~~~~IAEest~~p~vt~p~~~GGlGFd~kWnmgwmhd~l~Y~~~dp~~r~~~~~~ 1005 (1224)
T PRK14705 926 FGGRENLEAISFLQEVNATVYKTHPGAVMIAEESTAFPGVTAPTSHGGLGFGLKWNMGWMHDSLKYASEDPINRKWHHGT 1005 (1224)
T ss_pred cCCccChHHHHHHHHHHHHHHHHCCCeEEEEEcCCCCcCccccccCCCccCCcEecchhhHHHHHHhhhCcchhhcccch
Confidence 346788888763 4579999999977644322221 111223449999999998888888765433211222
Q ss_pred hcCCccc-ccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHH
Q 011993 223 ISGSSDL-YRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQM 301 (473)
Q Consensus 223 l~~~~~~-~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 301 (473)
++....+ +. ..+.+..|||+...... +....++|.. .-+...+
T Consensus 1006 ltf~~~ya~~-------e~fvl~~SHDevvhgk~-----------------------sl~~km~Gd~------~~k~a~l 1049 (1224)
T PRK14705 1006 ITFSLVYAFT-------ENFLLPISHDEVVHGKG-----------------------SMLRKMPGDR------WQQLANL 1049 (1224)
T ss_pred HHHHHHHHhh-------cCEecccccccccccch-----------------------hHHHhCCCcH------HHHHHHH
Confidence 2211111 11 12334568998532110 0001112221 1124568
Q ss_pred HHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCC
Q 011993 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNI 380 (473)
Q Consensus 302 ~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~ 380 (473)
|++++++++.||+|+||||+|+|...+++ ....++|...+. .+..+..++|+|++||+++|+|+..+...
T Consensus 1050 R~~~a~~~~~PGk~LlFMG~Efgq~~ew~--------~~~~LdW~ll~~~~h~~~~~~~rdLn~ly~~~paL~~~d~~~- 1120 (1224)
T PRK14705 1050 RAFLAYQWAHPGKQLIFMGTEFGQEAEWS--------EQHGLDWFLADIPAHRGIQLLTKDLNELYTSTPALYQRDNEP- 1120 (1224)
T ss_pred HHHHHHHHhcCCcCEEECccccCCCCCcc--------ccccCCCcccCChhhHHHHHHHHHHHHHHhcChhhhccCCCC-
Confidence 89999999999999999999999988653 235689998652 45689999999999999999999888755
Q ss_pred CcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEE-EECCCCCCCCCcEEEEeCCCCCCCCCC--C-CCC---
Q 011993 381 NDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVK-VSLPPPPPKRQWFRVVDTNLESPDDIV--P-EGA--- 453 (473)
Q Consensus 381 ~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~--- 453 (473)
..+.|+..+ +.+++|++|.|+.++++.++||+||++..+. +.+..+. .+.|+++++|+.....+.. . ...
T Consensus 1121 ~gf~wi~~~--d~~~~vlaf~R~~~~~~~vlvv~Nftp~~~~~y~igvp~-~G~y~eilnsd~~~ygGsg~~n~~~~~~~ 1197 (1224)
T PRK14705 1121 GGFQWINGG--DADRNVLSFIRWDGDGNPLVCAINFSGGPHKGYTLGVPA-AGAWTEVLNTDHETYGGSGVLNPGSLKAT 1197 (1224)
T ss_pred CceEEeecC--CCCCcEEEEEEeCCCCCEEEEEEcCCCCCccCceECCCC-CCeEEEEEeCchhhcCCCCcCCCCceeec
Confidence 556776432 4667899999997655679999999987765 4443332 5799999999876533211 0 000
Q ss_pred ------CCCCCeEEEcCCeEEEEEeC
Q 011993 454 ------AGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 454 ------~~~~~~i~l~p~~~~vl~~~ 473 (473)
...+..|+|||++++||+.+
T Consensus 1198 ~~~~~g~~~s~~i~lPpl~~~~~~~~ 1223 (1224)
T PRK14705 1198 TEGQDGQPATLTVTLPPLGASFFAPA 1223 (1224)
T ss_pred ccccCCCCceEEEEecCCEEEEEEEC
Confidence 11244799999999999853
No 19
>PRK09441 cytoplasmic alpha-amylase; Reviewed
Probab=100.00 E-value=6.1e-49 Score=403.41 Aligned_cols=363 Identities=17% Similarity=0.190 Sum_probs=235.7
Q ss_pred CccccCCCCCCCCCCcCCCCCccc---------CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCC
Q 011993 2 EFQRRRNPRDHMVNTWGYSTINFF---------SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD 72 (473)
Q Consensus 2 ~~~~~~~~~~~~~~~~GY~~~d~~---------~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~ 72 (473)
|.+.+++ ...+|||+++||| .|||+|||+ +||++||++||+|||+||+|+|+|||+..+
T Consensus 43 P~~~~~~----~~~~hgY~~~D~~~~~~~~~~~~id~~fGt~--------~dl~~Li~~~H~~Gi~vi~D~V~NH~~~~~ 110 (479)
T PRK09441 43 PAYKGTS----GGYDVGYGVYDLFDLGEFDQKGTVRTKYGTK--------EELLNAIDALHENGIKVYADVVLNHKAGAD 110 (479)
T ss_pred CCccCCC----CCCCCCCCeecccccccccccCCcCcCcCCH--------HHHHHHHHHHHHCCCEEEEEECcccccCCC
Confidence 5555543 2467999999999 799999995 999999999999999999999999999632
Q ss_pred CCCCcccccc-------------------------CC--CC----ccceeecCCCC---------------ccccc----
Q 011993 73 DANPYTTSFR-------------------------GI--DN----KVYYMVDGTGQ---------------LLNYA---- 102 (473)
Q Consensus 73 ~~~~~~~~~~-------------------------~~--~~----~~~~~~~~~~~---------------~~~~~---- 102 (473)
.|+|++..+ +. .. ..|+.+.+... ...+.
T Consensus 111 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~ 189 (479)
T PRK09441 111 -EKETFRVVEVDPDDRTQIISEPYEIEGWTRFTFPGRGGKYSDFKWHWYHFSGTDYDENPDESGIFKIVGDGKGWDDQVD 189 (479)
T ss_pred -cceeeeeeeeCccccccccCCceeecccccccCCCCCCcCCcceeCCcCCCCcccccccCcCceEEecCCCCCCccccc
Confidence 345653100 00 00 11222221100 01111
Q ss_pred --------CCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCCceEEe
Q 011993 103 --------GCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIA 174 (473)
Q Consensus 103 --------~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~ 174 (473)
...||||++||+|+++|++++++|++++||||||+|+|++++.++ | .++.+++++ ...|+++++|
T Consensus 190 ~~~~~~~~~~lpDLn~~np~V~~~l~~~~~~w~~~~giDGfRlDavk~v~~~f---~---~~~~~~~~~-~~~~~~~~vG 262 (479)
T PRK09441 190 DENGNFDYLMGADIDFRHPEVREELKYWAKWYMETTGFDGFRLDAVKHIDAWF---I---KEWIEHVRE-VAGKDLFIVG 262 (479)
T ss_pred cccCCcccccccccccCCHHHHHHHHHHHHHHHHhcCCCEEEEhhhcCCCHHH---H---HHHHHHHHH-hcCCCeEEEE
Confidence 126899999999999999999999977999999999999997764 2 222333322 2346899999
Q ss_pred cCCCCccc----cccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCC
Q 011993 175 EPWDCRGL----YLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGF 250 (473)
Q Consensus 175 E~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~ 250 (473)
|.|..... |.... .. ....+++.+...++..+.+.. ...+...+.... . ...+..+++|++|||+.
T Consensus 263 E~~~~~~~~~~~y~~~~-~~--~~~~~Df~~~~~l~~~~~~~~--~~~l~~~~~~~~-~----~~~~~~~~~FldNHD~~ 332 (479)
T PRK09441 263 EYWSHDVDKLQDYLEQV-EG--KTDLFDVPLHYNFHEASKQGR--DYDMRNIFDGTL-V----EADPFHAVTFVDNHDTQ 332 (479)
T ss_pred eecCCChHHHHHHHHhc-CC--CceEecHHHHHHHHHHHhcCC--ccchHhhhCcch-h----hcCcccceeeeccccCC
Confidence 99976632 22111 00 002344455555555544321 112222221110 1 12445679999999999
Q ss_pred ceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhc-CceeeecccccccccCC
Q 011993 251 TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQ-GTPMMLMGDEYGHTRYG 329 (473)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~p-G~P~iy~G~E~g~~~~~ 329 (473)
|+....... ....+++|++++|++| |+|+||||+|+|+.+..
T Consensus 333 R~~~~~~~~-------------------------------------~~~~~~lA~a~llT~p~GiP~IYYGdE~g~~g~~ 375 (479)
T PRK09441 333 PGQALESPV-------------------------------------EPWFKPLAYALILLREEGYPCVFYGDYYGASGYY 375 (479)
T ss_pred Ccccccccc-------------------------------------cccchHHHHHHHHhCCCCceeeEeccccCCCCCc
Confidence 875422100 0122578999999999 99999999999997631
Q ss_pred CCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCC-C
Q 011993 330 NNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNG-A 408 (473)
Q Consensus 330 ~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~-~ 408 (473)
+ ..++++++++|++||++++ .|+...+ ..++++++|.|...++ +
T Consensus 376 ~---------------------~~~l~~~i~~Li~lRk~~~---~G~~~~~-----------~~~~~~~~~~R~~~~~~~ 420 (479)
T PRK09441 376 I---------------------DMPFKEKLDKLLLARKNFA---YGEQTDY-----------FDHPNCIGWTRSGDEENP 420 (479)
T ss_pred c---------------------cchHHHHHHHHHHHHHHhC---CCCeeEe-----------ecCCCEEEEEEecCCCCc
Confidence 1 2368999999999999854 5665543 3567899999987532 5
Q ss_pred eEEEEEeCCC-CcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEE
Q 011993 409 DIYLAFNAHD-FFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 409 ~~lvv~N~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 471 (473)
.++||+|.++ ...++.++....++.|.++++........ .......++|+|.++.|+.
T Consensus 421 ~vvvvinn~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~-----~~~G~~~~~l~~~s~~i~~ 479 (479)
T PRK09441 421 GLAVVISNGDAGEKTMEVGENYAGKTWRDYTGNRQETVTI-----DEDGWGTFPVNGGSVSVWV 479 (479)
T ss_pred cEEEEEECCCCCcEEEEeCccCCCCEeEhhhCCCCCeEEE-----CCCCeEEEEECCceEEEeC
Confidence 7888887765 44447776655566788776543221100 0112358999999999973
No 20
>PLN02877 alpha-amylase/limit dextrinase
Probab=100.00 E-value=3.5e-48 Score=409.43 Aligned_cols=419 Identities=24% Similarity=0.358 Sum_probs=297.3
Q ss_pred CCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccc--cccCCCCcccee
Q 011993 14 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT--SFRGIDNKVYYM 91 (473)
Q Consensus 14 ~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~--~~~~~~~~~~~~ 91 (473)
.+||||++..|++++++|++.|.++ .++.|||+||++||++||+||||+|+||++. .++|.. .++...+..||.
T Consensus 438 ~yNWGYDP~~YfaPEgSYatdP~g~-~RI~efk~mV~~lH~~GI~VImDVVyNHt~~---~g~~~~~s~ld~~vP~YY~r 513 (970)
T PLN02877 438 GYNWGYNPVLWGVPKGSYASNPDGP-CRIIEFRKMVQALNRIGLRVVLDVVYNHLHS---SGPFDENSVLDKIVPGYYLR 513 (970)
T ss_pred CCCCCCCccccCCCCcccccCCCCc-chHHHHHHHHHHHHHCCCEEEEEECCccccC---CCCcchhhcccCCCCCceEE
Confidence 4899999999999999999976554 7999999999999999999999999999997 677752 344444434444
Q ss_pred ecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc---cccC
Q 011993 92 VDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD---AILS 168 (473)
Q Consensus 92 ~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~---~~~~ 168 (473)
.+++|.+.+. .|+.+.+.+++.||++|++++++|+++|||||||||.++++..+. +....+.++++.++ ...|
T Consensus 514 ~~~~G~~~ns-~c~n~~Ase~~mvrklIlDsl~yW~~ey~VDGFRFDlmg~i~~~t---m~~~~~~L~~i~~~~~~~dg~ 589 (970)
T PLN02877 514 RNSDGFIENS-TCVNNTASEHYMVDRLIVDDLLNWAVNYKVDGFRFDLMGHLMKRT---MVRAKDALQSLTLERDGVDGS 589 (970)
T ss_pred ECCCCCcccC-CccCCCccCCHHHHHHHHHHHHHHHHHhCCCEEEEEccccccHHH---HHHHHHHHHHHhhhhcccCCC
Confidence 4778888884 566777999999999999999999999999999999999998874 45566667776542 2258
Q ss_pred CceEEecCCCCccccccC-----CCCC--cchhhhhhhHHHHHHHH---HHc-CCCCcH---------------------
Q 011993 169 RCKIIAEPWDCRGLYLVG-----KFPN--WDRWAEWNGKYRDDLRK---FIK-GDPGMK--------------------- 216 (473)
Q Consensus 169 ~~~li~E~~~~~~~~~~~-----~~~~--~~~~~~~~~~~~~~l~~---~~~-~~~~~~--------------------- 216 (473)
+++++||.|+.++.-... ...+ ....+.||+.+++.++- |-. ...++.
T Consensus 590 ~i~lyGEgW~~g~~~~~~~~~~A~q~n~~g~gIg~FnD~~RDavkGg~~F~~~~~qGf~~G~~~~pn~~~~~~~~~~~~~ 669 (970)
T PLN02877 590 SIYLYGEGWDFGEVAKNGRGVNASQFNLAGTGIGSFNDRIRDAMLGGSPFGHPLQQGFVTGLFLQPNGHDQGGEDVQELM 669 (970)
T ss_pred ceEEEEeCCCCCCcccccccccccccccCCCceEEecchhHHHHcCCCCCCCcCCCceecccccCCcccccccchhhhhh
Confidence 899999999877421111 1000 01457788888888772 200 011111
Q ss_pred -----HHHHHHhcCCccc------------------ccc----cCCCCCcceeEEEecCCCceeeeeeccccccccCCCC
Q 011993 217 -----GILATRISGSSDL------------------YRV----NKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEG 269 (473)
Q Consensus 217 -----~~~~~~l~~~~~~------------------~~~----~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~ 269 (473)
..+...+.+...- |.. ....|...|||++.||+.+|.|.+.+.....
T Consensus 670 ~~~~~d~i~~glaGnl~~~~~~~~~g~~~~g~~~~~y~~~~~~ya~~P~q~InYvs~HDN~TL~D~l~~~~~~~------ 743 (970)
T PLN02877 670 LATAKDHIQVGMAGNLKDYVLTNREGKEVKGSEVLTHDGKPVAYASSPTETINYVSAHDNETLFDIISLKTPME------ 743 (970)
T ss_pred hhhhHHHHHHHhccchhccccccccccccccccccccCCcccccccCHHHheeeeeccCCchHHHHHHhhcCCC------
Confidence 1111223332211 111 1136788999999999999988765432110
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc
Q 011993 270 GNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE 349 (473)
Q Consensus 270 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~ 349 (473)
. ....+.+..++++++.++.+|||+|+.|+|+..++.++.++|......+.++|+...
T Consensus 744 -----------------~-----s~~~r~r~~~la~aiv~lsQGipF~haG~E~lRSK~~d~nSYnSgD~~N~lDw~~~~ 801 (970)
T PLN02877 744 -----------------I-----SVDERCRINHLATSIIALSQGIPFFHAGDEILRSKSLDRDSYNSGDWFNRLDFSYDS 801 (970)
T ss_pred -----------------C-----CHHHHHHHHHHHHHHHHHhChhhHHhcchhhhcCCCCCCCCCcCchhhheecccccc
Confidence 0 122335667889999999999999999999999999999999999999999999832
Q ss_pred -----------cc----------------------chhHHHHHHHHHHHHhcccCCCCcCCCCCC-cceeeccccCCCCC
Q 011993 350 -----------TK----------------------KNSHYRFFSEVIKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDS 395 (473)
Q Consensus 350 -----------~~----------------------~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~-~~~~~~~~~~~~~~ 395 (473)
.. -....++|+.||+||+++|+|+.++...+. .+.|+.... ...+
T Consensus 802 nn~~~GlP~~~~~~~~w~~~~~~l~~~~~~p~~~~i~~~~~~~~~Li~lRks~plFrl~t~~~I~~~v~F~~~g~-~~~~ 880 (970)
T PLN02877 802 NNWGVGLPPKEKNEDNWPLIKPRLADPSFKPSKEHILAALDNFLDLLRIRYSSPLFRLRTANAIQERVRFHNTGP-SSIP 880 (970)
T ss_pred CccccCCChhHhcchhhhhhhhhhcccccccchhHHHHHHHHHHHHHHHHhcCcccCCCCHHHHHhhcEEeccCC-CcCC
Confidence 11 145688999999999999999999987664 366664321 3456
Q ss_pred cEEEEEEecCC------------CCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCC-CCCC-CCCCCCCeEE
Q 011993 396 KFLAFTLHDNN------------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDD-IVPE-GAAGTGSTYN 461 (473)
Q Consensus 396 ~v~a~~R~~~~------------~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~i~ 461 (473)
.|++|.-.... -+.++||+|.+++.+++.+|... .|..-|-.-.....+ .... ........++
T Consensus 881 gvi~~~i~d~~~~~~~~~~~d~~~~~ivVv~Na~~~~~~~~~~~~~---~~~~~l~~v~~~~~d~~~~~~~~~~~~~~~t 957 (970)
T PLN02877 881 GVIVMSIEDGHEGVPGLSQLDPIYSRIVVIFNARPTEVSFESPALK---GRTLELHPVQVMSADEVVKKSVYEASSGVFT 957 (970)
T ss_pred CEEEEEEcCCCCccccccccccccCcEEEEEcCCCccEEEeccccc---ccceeecccccccccceeccceeeccCCeEE
Confidence 99999987642 15699999999999999998742 221111110110011 1111 1123456899
Q ss_pred EcCCeEEEEEe
Q 011993 462 LSPYSSILLEA 472 (473)
Q Consensus 462 l~p~~~~vl~~ 472 (473)
|||+++.||..
T Consensus 958 vp~~t~aVfv~ 968 (970)
T PLN02877 958 VPPRTTAVFVE 968 (970)
T ss_pred ecCceEEEEEe
Confidence 99999999974
No 21
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=100.00 E-value=3.7e-48 Score=410.77 Aligned_cols=413 Identities=24% Similarity=0.391 Sum_probs=291.6
Q ss_pred CCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc-ccCCCCccceee
Q 011993 14 VNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS-FRGIDNKVYYMV 92 (473)
Q Consensus 14 ~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~-~~~~~~~~~~~~ 92 (473)
.+||||++..|++++.+|++.| .+.+|+.|||+||++||++||+||||+|+|||+. .+++... ++... +.||..
T Consensus 376 ~yNWGYDP~~y~aPegSYatdp-~g~~Ri~Efk~mV~alH~~Gi~VIlDVVyNHt~~---~g~~~~s~ld~~~-P~YY~r 450 (898)
T TIGR02103 376 SYNWGYDPFHYTVPEGSYATDP-EGPARIKEFREMVQALNKTGLNVVMDVVYNHTNA---SGPNDRSVLDKIV-PGYYHR 450 (898)
T ss_pred CCCCCCCCcccCCcChhhccCC-CCchHHHHHHHHHHHHHHCCCEEEEEeecccccc---cCccCcccccccC-cHhhEe
Confidence 4689999999999999999976 4668999999999999999999999999999998 6655433 33333 455554
Q ss_pred -cCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCCce
Q 011993 93 -DGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCK 171 (473)
Q Consensus 93 -~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (473)
+.+|.+.+..+| .+++.++|+|+++|++++++|+++|||||||||++++++.++ |....+.++ +..|+++
T Consensus 451 ~~~~G~~~n~~~~-~d~a~e~~~Vrk~iiDsl~~W~~ey~VDGFRfDlm~~~~~~f---~~~~~~~l~-----~i~pdi~ 521 (898)
T TIGR02103 451 LNEDGGVENSTCC-SNTATEHRMMAKLIVDSLVVWAKDYKVDGFRFDLMGHHPKAQ---MLAAREAIK-----ALTPEIY 521 (898)
T ss_pred eCCCCCeecCCCC-cCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEechhhCCHHH---HHHHHHHHH-----HhCCCEE
Confidence 556777776655 688999999999999999999999999999999999998775 222222222 3578999
Q ss_pred EEecCCCCcccc-----ccCCCCC--cchhhhhhhHHHHHHHHH--HcC------CCCcHH-------------------
Q 011993 172 IIAEPWDCRGLY-----LVGKFPN--WDRWAEWNGKYRDDLRKF--IKG------DPGMKG------------------- 217 (473)
Q Consensus 172 li~E~~~~~~~~-----~~~~~~~--~~~~~~~~~~~~~~l~~~--~~~------~~~~~~------------------- 217 (473)
++||.|+.++.. ......+ ....+.||+.+++.++.- +.. ..++..
T Consensus 522 l~GEgW~~~~~~~~~~~~~a~~~n~~~~~ig~FnD~~RDavrGg~~f~~~~~~~~~~Gf~~G~~~~~~~~~~~~~~~~~~ 601 (898)
T TIGR02103 522 FYGEGWDFGEVANNRRFINATQLNLAGTGIGTFSDRLRDAVRGGGPFDSGDALRQNQGFGSGLAVQPNAHHGLDAASKDG 601 (898)
T ss_pred EEecCCCcccccchhhhhhhhccccCCCCeEEeccchhhHhcCCCccccccccccCcceecCcccCCcccccccchhhhh
Confidence 999999875321 1111111 113467788887777631 111 011100
Q ss_pred ------HHHHHhcCCccc-----------------cc----ccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCC
Q 011993 218 ------ILATRISGSSDL-----------------YR----VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGG 270 (473)
Q Consensus 218 ------~~~~~l~~~~~~-----------------~~----~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~ 270 (473)
.+...+.+...- |. .-...|...+||++.||+.+|.|.+.+.....
T Consensus 602 ~~~~~d~i~~g~~Gnl~~~~~~~~~g~~~~g~~~~y~g~~~~ya~~P~e~inYvs~HDN~TL~D~l~~~~~~~------- 674 (898)
T TIGR02103 602 ALHLADLTRLGMAGNLKDFVLTDHEGKVVTGEELDYNGAPAGYAADPTETINYVSKHDNQTLWDAISYKAAAE------- 674 (898)
T ss_pred hhhhHHHHHHhhcCccccccccccccccccccccccCcCccccccCHHHheeeeeccCCccHHHHHHhhCCCC-------
Confidence 111223332210 10 01136778999999999999988765432211
Q ss_pred CCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc
Q 011993 271 NDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET 350 (473)
Q Consensus 271 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~ 350 (473)
.. ...+.+..++++++.++.+|||+|+.|+|+..++.++.++|......+.++|+....
T Consensus 675 ----------------~~-----~~~r~r~~~la~a~~~lsQGipF~haG~E~lRSK~~~~nSY~sgD~~N~vdw~~~~~ 733 (898)
T TIGR02103 675 ----------------TP-----SAERVRMQAVSLSTVMLGQGIPFFHAGSELLRSKSFDRDSYDSGDWFNRVDFSGQDN 733 (898)
T ss_pred ----------------CC-----HHHHHHHHHHHHHHHHHhChhhHHhcchHhhcCCCCCCCCCcCchhhheeccccccc
Confidence 00 122356667899999999999999999999999999999999999999999987642
Q ss_pred ---------------------------------cchhHHHHHHHHHHHHhcccCCCCcCCCCCC-cceeeccccCCCCCc
Q 011993 351 ---------------------------------KKNSHYRFFSEVIKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDSK 396 (473)
Q Consensus 351 ---------------------------------~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~-~~~~~~~~~~~~~~~ 396 (473)
.-....++|+.||+||+++|.|+.++...+. .+.|+.... ...+.
T Consensus 734 ~~~~glp~~~~n~~~w~~~~~~~~~~~~~p~~~~~~~~~~~~~~Li~lRks~p~Frl~t~~~I~~~v~F~~~g~-~~~~g 812 (898)
T TIGR02103 734 NWNVGLPRADKDGSNWPIIAPVLQDAAAKPDATDIKATTAFFLELLRIRSSSPLFRLDTAAEVMKRVDFRNTGP-DQIPG 812 (898)
T ss_pred ccccCCCcccccccchhhhcccccccccccchhhHHHHHHHHHHHHHHHhCCcccCCCCHHHHHhheEEeccCC-cCCCC
Confidence 1257899999999999999999999987654 466664321 34479
Q ss_pred EEEEEEecCC----------CCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCC-CCCCCCCeEEEcCC
Q 011993 397 FLAFTLHDNN----------GADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE-GAAGTGSTYNLSPY 465 (473)
Q Consensus 397 v~a~~R~~~~----------~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~l~p~ 465 (473)
|++|...... -+.++||+|.+++.+++ ++.. .+..|..+....... ...... .......+++|||+
T Consensus 813 ~i~~~i~d~~~~~~~~~d~~~~~ivVv~Na~~~~~~~-~~~~-~~~~~~l~~~~~~~~-d~~v~~~~~~~~~~~~~vp~~ 889 (898)
T TIGR02103 813 LIVMSIDDGGIQAGASLDPRYDGIVVIFNARPEEVTL-SPDF-AGTGLELHAVQQASG-DESVAKSVYSAANGTFTVPAW 889 (898)
T ss_pred EEEEEEcCCccccccccccccCeEEEEEcCCCccEEE-eccc-CCCcEEEEecccccC-ccccccceeeccCCEEEEcCc
Confidence 9999986641 25799999999999998 6654 234677543321111 111111 11234579999999
Q ss_pred eEEEEEe
Q 011993 466 SSILLEA 472 (473)
Q Consensus 466 ~~~vl~~ 472 (473)
++.||..
T Consensus 890 s~~V~~~ 896 (898)
T TIGR02103 890 TTAVFVL 896 (898)
T ss_pred EEEEEEe
Confidence 9999974
No 22
>TIGR03852 sucrose_gtfA sucrose phosphorylase. In the forward direction, this enzyme uses phosphate to cleave sucrose into D-fructose + alpha-D-glucose 1-phosphate. Characterized representatives from Streptococcus mutans and Bifidobacterium adolescentis represent well-separated branches of a molecular phylogenetic tree. In S. mutans, the region including this gene has been associated with neighboring transporter genes and multiple sugar metabolism.
Probab=100.00 E-value=1.5e-48 Score=387.80 Aligned_cols=368 Identities=12% Similarity=0.132 Sum_probs=254.6
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
|||||+|+ |+ ||+|+||++|||+||| ++||++|+++ |+||+|+|+||||. +|+||++
T Consensus 37 lPffps~s-D~------GYdv~DY~~VDP~~Gt--------~~Df~~L~~~-----~kvmlDlV~NHtS~---~h~WFq~ 93 (470)
T TIGR03852 37 LPFFPSTG-DR------GFAPMDYTEVDPAFGD--------WSDVEALSEK-----YYLMFDFMINHISR---QSEYYQD 93 (470)
T ss_pred CCCCcCCC-CC------CcCchhhceeCcccCC--------HHHHHHHHHh-----hhHHhhhccccccc---chHHHHH
Confidence 79999987 66 9999999999999999 7999999987 89999999999999 9999998
Q ss_pred ccC----CCCcccee-----ecCC----C---------------C-----------cccccCCcCCCCCCCHHHHHHHHH
Q 011993 81 FRG----IDNKVYYM-----VDGT----G---------------Q-----------LLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 81 ~~~----~~~~~~~~-----~~~~----~---------------~-----------~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
+.. ....+||+ |.+. . . ...|...|||||++||+|+++|.+
T Consensus 94 ~~~~~~~s~y~d~fi~~~~~w~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~np~v~e~i~~ 173 (470)
T TIGR03852 94 FLEKKDNSKYKDLFIRYKDFWPNGRPTQEDVDLIYKRKDRAPYQEVTFADGSTEKVWNTFGEEQIDLDVTSETTKRFIRD 173 (470)
T ss_pred HHhcCCCCCccceEEecccccCCCCccccccccccCCCCCCCCCceEEcCCCCeEEEccCCccccccCCCCHHHHHHHHH
Confidence 642 23378888 3210 0 0 112445699999999999999999
Q ss_pred HHHHHHHhcCccEEEEecccccccCCCCCCCC-----CHHHHHHHHhccccCCceEEecCCCCccc-cccCCCCCcchhh
Q 011993 122 SLRHWVVEYHVDGFRFDLASVLCRGTDGSPLN-----APPLIRAIAKDAILSRCKIIAEPWDCRGL-YLVGKFPNWDRWA 195 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~li~E~~~~~~~-~~~~~~~~~~~~~ 195 (473)
+++||+ +.||||||+||+.++++.. |+.|. ..++++++++-...+++.+|+|.+..-.. +..++ .+
T Consensus 174 il~fwl-~~GvdgfRLDAv~~l~K~~-Gt~c~~l~pet~~~l~~~r~~~~~~~~~ll~E~~~~~~~~~~~gd------e~ 245 (470)
T TIGR03852 174 NLENLA-EHGASIIRLDAFAYAVKKL-GTNDFFVEPEIWELLDEVRDILAPTGAEILPEIHEHYTIQFKIAE------HG 245 (470)
T ss_pred HHHHHH-HcCCCEEEEecchhhcccC-CCCcccCChhHHHHHHHHHHHhccCCCEEEeHhhhhccccccccc------ce
Confidence 999999 8899999999999999987 55553 34566666665577899999998642211 11121 14
Q ss_pred hhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCC
Q 011993 196 EWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCN 275 (473)
Q Consensus 196 ~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (473)
.|++.|.....-+..-..+....+..++... |..++||+.|||+..+.++.+......+.........-+
T Consensus 246 ~mvY~F~lppl~l~al~~~~~~~l~~wl~~~----------p~~~~nfL~sHDgigl~~~~glL~~~ei~~l~~~~~~~g 315 (470)
T TIGR03852 246 YYVYDFALPMLVLYSLYSGKTNRLADWLRKS----------PMKQFTTLDTHDGIGVVDVKDLLTDEEIDYTSEELYKVG 315 (470)
T ss_pred eEEccCccchhhHHHhhccCHHHHHHHHHhC----------cccceEEeecCCCCCCccccccCCHHHHHHHHHHHHhcC
Confidence 4445554443333322333344555555522 124579999999999877654444433322222233334
Q ss_pred CCCCC--CCCCCCC--------CChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCC---CCCCCCCCCCC
Q 011993 276 DNFSW--NCGFEGE--------TDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN---NSYGHDTAINN 342 (473)
Q Consensus 276 ~~~~~--~~~~~g~--------~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~---~~~~~~~~r~~ 342 (473)
++++| .....|+ ...+++..- .+++.+|.+++|++||+|.||||+|+|+.+.... ...++. .++
T Consensus 316 ~~~s~~~~~~~~~~~~~Y~in~t~~~aL~~~-~~r~~~a~ai~~~lpGiP~iYy~~llg~~nD~~~~~rt~~~R~--Inr 392 (470)
T TIGR03852 316 ANVKKIYSTAAYNNLDIYQINCTYYSALGDD-DQAYLLARAIQFFAPGIPQVYYVGLLAGKNDIELLEETKEGRN--INR 392 (470)
T ss_pred CCccccccccccCCcCceeeehhhHHHhCCC-HHHHHHHHHHHHcCCCCceEEechhhcCCchHHHHHhcCCCCC--CCC
Confidence 45665 2222221 111222221 4789999999999999999999999999764321 112333 344
Q ss_pred ccccccc---ccchhHHHHHHHHHHHHhcccCCCC-cCCCCCCcceeeccccCCCCCcEEEEEEecCC-CCeEEEEEeCC
Q 011993 343 FQWGQLE---TKKNSHYRFFSEVIKFRQSRRVFGR-EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNN-GADIYLAFNAH 417 (473)
Q Consensus 343 ~~W~~~~---~~~~~l~~~~~~L~~lR~~~p~l~~-g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~-~~~~lvv~N~~ 417 (473)
-.|+..+ ..+..+..-..+|+++|+++|||+. |++. +. ..++.|+++.|...+ ++++++++|++
T Consensus 393 ~~~~~~~i~~~l~~~v~~~L~~li~~R~~~~aF~~~g~~~-~~----------~~~~~~~~~~r~~~~~~~~~~~~~n~~ 461 (470)
T TIGR03852 393 HYYTLEEIAEEVKRPVVAKLLNLLRFRNTSKAFDLDGSID-IE----------TPSENQIEIVRTNKDGGNKAILTANLK 461 (470)
T ss_pred CCCCHHHHHHHHhhHHHHHHHHHHHHHhhCcccCCCCceE-ec----------CCCCcEEEEEEEcCCCCceEEEEEecC
Confidence 4455433 2234566667779999999999998 6554 31 578899999998765 68999999999
Q ss_pred CCcEEE
Q 011993 418 DFFVKV 423 (473)
Q Consensus 418 ~~~~~~ 423 (473)
++.+.+
T Consensus 462 ~~~~~~ 467 (470)
T TIGR03852 462 TKTFTI 467 (470)
T ss_pred CCcEec
Confidence 988654
No 23
>PLN02960 alpha-amylase
Probab=100.00 E-value=1.2e-46 Score=390.80 Aligned_cols=413 Identities=17% Similarity=0.216 Sum_probs=259.8
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCC-ccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTT 79 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~-~~~ 79 (473)
||.+..|. .++|||++++||+|+++|||+ ++|++||++||++||+||||+|+||++. +++ .+.
T Consensus 437 mPv~e~~~-----~~swGY~~~~yfa~~~~yGtp--------~dfk~LVd~aH~~GI~VILDvV~NH~~~---d~~~~L~ 500 (897)
T PLN02960 437 IGVQEHKD-----YSSVGYKVTNFFAVSSRFGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAA---DEMVGLS 500 (897)
T ss_pred CCcccCCC-----CCCCCCCcccCCCcccccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCC---ccccchh
Confidence 56665543 457999999999999999996 9999999999999999999999999998 543 234
Q ss_pred cccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc-ccCC-----CC----
Q 011993 80 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL-CRGT-----DG---- 149 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l-~~~~-----~~---- 149 (473)
.|++.. ..||..+..+.. ..++ ...+|+.+|+|+++|++++++|+++|||||||+||++.| +.+. .|
T Consensus 501 ~FDG~~-~~Yf~~~~~g~~-~~WG-~~~fNy~~~eVr~fLlsna~yWl~EyhIDGfR~DAV~sMlY~d~g~~~~~G~~~~ 577 (897)
T PLN02960 501 LFDGSN-DCYFHSGKRGHH-KRWG-TRMFKYGDHEVLHFLLSNLNWWVTEYRVDGFQFHSLGSMLYTHNGFASFTGDLDE 577 (897)
T ss_pred hcCCCc-cceeecCCCCcc-CCCC-CcccCCCCHHHHHHHHHHHHHHHHHHCCCceeecccceeeeeccCccccCCcccc
Confidence 565532 234443433333 3333 256899999999999999999999999999999988664 3331 12
Q ss_pred -----CCCCCHHHHHHHHhc--cccCCceEEecCCCCccccccC-CCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHH
Q 011993 150 -----SPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILAT 221 (473)
Q Consensus 150 -----~~~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 221 (473)
....+..+|+++... ...|++++|||.......+... ....+.+.+.|++.+++.+..++..... ......
T Consensus 578 ~~n~~~d~~Ai~fL~~lN~~v~~~~P~vilIAEdss~~P~vt~P~~~GGLGFDYkwnmG~~~d~l~~l~~~~~-r~~~~~ 656 (897)
T PLN02960 578 YCNQYVDRDALIYLILANEMLHQLHPNIITIAEDATFYPGLCEPTSQGGLGFDYYVNLSPSEMWLSLLENVPD-QEWSMS 656 (897)
T ss_pred cCCccCCchHHHHHHHHHHHHHhhCCCeEEEEECCCCCCCccccCCCCCCCcccccCCCcHHHHHHHHHhCcC-CCCChh
Confidence 112355677777763 4579999999976544322221 1112234488888988888877765432 111112
Q ss_pred HhcCCcccccccCCCCCcceeEEEecCCCceee--eeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHH
Q 011993 222 RISGSSDLYRVNKRKPYHSINFIIAHDGFTLYD--LVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSR 299 (473)
Q Consensus 222 ~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 299 (473)
.+...... ....+.+.++|+||||+..... +..-. .+. .|...+. ...-.+......
T Consensus 657 ~l~~s~~~---~~~~~~~~v~Y~EnHDQVv~Gkrsl~~rL------~g~----------~~~k~~~--~~~~~lRa~al~ 715 (897)
T PLN02960 657 KIVSTLVK---NKENADKMLSYAENHNQSISGGKSFAEIL------LGK----------NKESSPA--VKELLLRGVSLH 715 (897)
T ss_pred ccEeeecc---CcCCcceEEEEecCcCccccCcccHHHHC------CCc----------hhhhhcc--cChhhhhhhhHH
Confidence 33322221 1235567899999999943211 11000 000 0000000 000000000011
Q ss_pred HHHHHHHHHHHhcCceeeecccccccccCCCC-CC-CCCCCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcC
Q 011993 300 QMKNFHLALMVSQGTPMMLMGDEYGHTRYGNN-NS-YGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGRED 376 (473)
Q Consensus 300 ~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~-~~-~~~~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~ 376 (473)
.+..+++++++ ||+||+|||+|+|....... .. -........++|+.... .+..++.|+|+|++||+++|+|..+.
T Consensus 716 ~~~rllt~~~~-Pg~pLlFMG~EFGh~e~~~~PdP~n~~tf~~s~LdW~Ll~~~~h~~l~~f~rdL~~Lr~~~paL~~g~ 794 (897)
T PLN02960 716 KMIRLITFTLG-GSAYLNFMGNEFGHPERVEFPRASNNFSFSLANRRWDLLEDGVHAHLFSFDKALMALDEKYLILSRGL 794 (897)
T ss_pred HHHHHHHHHhC-CCCCEeeCccccCChhhhhCcCCCCccccccccCCcccccChhHHHHHHHHHHHHHHHhcChhhcCCc
Confidence 22223444444 89999999999998542110 00 00111245789998653 35789999999999999999998665
Q ss_pred CCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCc----EEEECCCCCCCCCcEEEEeCCCCCCCCCCCC-
Q 011993 377 FLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFF----VKVSLPPPPPKRQWFRVVDTNLESPDDIVPE- 451 (473)
Q Consensus 377 ~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~----~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 451 (473)
.-... .+..++|++|.| + .++||+||++.. ..+.+|. .+.|..+++|+.....+....
T Consensus 795 ~~i~~---------~d~~~~Viaf~R----~-~llvV~NFsp~~~~~~Y~vgvP~---~G~y~eilNSD~~~yGG~g~~~ 857 (897)
T PLN02960 795 PNIHH---------VNDTSMVISFTR----G-PLLFAFNFHPTNSYEEYEVGVEE---AGEYELILNTDEVKYGGQGRLT 857 (897)
T ss_pred ceeee---------ecCCCCEEEEEe----C-CeEEEEeCCCCCcCcCceECCCC---CCcEEEEEeCchhhcCCCCccC
Confidence 43221 145668999999 2 499999999742 3344442 579999999977653221100
Q ss_pred -C------------CCCCCCeEEEcCCeEEEEEe
Q 011993 452 -G------------AAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 452 -~------------~~~~~~~i~l~p~~~~vl~~ 472 (473)
. ......+|+|||++++||+.
T Consensus 858 ~~~~~~~t~~~~~~g~~~si~i~LPp~sa~v~k~ 891 (897)
T PLN02960 858 EDQYLQRTKSKRIDGLRNCLELTLPSRSAQVYKL 891 (897)
T ss_pred CCcceeeccccccCCCCceEEEEeCCCEEEEEEE
Confidence 0 01124478999999999975
No 24
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=100.00 E-value=9.2e-46 Score=384.94 Aligned_cols=418 Identities=17% Similarity=0.209 Sum_probs=269.8
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCC-ccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTT 79 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~-~~~ 79 (473)
||.+..|. .++|||+++|||+|+++|||+ +|||+||++||++||+||||+|+||++. ++. .+.
T Consensus 271 mPi~e~~~-----~~~wGY~~~~~fa~~~~~Gtp--------~dlk~LVd~aH~~GI~VilDvV~nH~~~---~~~~gl~ 334 (758)
T PLN02447 271 MAIQEHAY-----YGSFGYHVTNFFAVSSRSGTP--------EDLKYLIDKAHSLGLRVLMDVVHSHASK---NTLDGLN 334 (758)
T ss_pred CCccccCC-----CCCCCcCcccCcccccccCCH--------HHHHHHHHHHHHCCCEEEEEeccccccc---ccccccc
Confidence 56665543 468999999999999999996 9999999999999999999999999997 332 233
Q ss_pred cccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccc-c------CCCCC--
Q 011993 80 SFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLC-R------GTDGS-- 150 (473)
Q Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~-~------~~~~~-- 150 (473)
.|++.. ..||..++.+.. ..++ ...+|+.+++|+++|++++++|+++|||||||||++++|- . ++.+.
T Consensus 335 ~fDg~~-~~Yf~~~~~g~~-~~w~-~~~~N~~~~eVr~fLl~~~~~Wl~ey~IDGfRfDaV~smlY~~hg~~~~f~~~~~ 411 (758)
T PLN02447 335 GFDGTD-GSYFHSGPRGYH-WLWD-SRLFNYGNWEVLRFLLSNLRWWLEEYKFDGFRFDGVTSMLYHHHGLQMAFTGNYN 411 (758)
T ss_pred ccCCCC-ccccccCCCCCc-CcCC-CceecCCCHHHHHHHHHHHHHHHHHhCcccccccchhhhhccccCcccccccCcc
Confidence 455432 356665544332 2222 2369999999999999999999999999999999888762 2 22221
Q ss_pred -------CCCCHHHHHHHHhc--cccCCceEEecCCCCccccccC-CCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHH
Q 011993 151 -------PLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILA 220 (473)
Q Consensus 151 -------~~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 220 (473)
...+..+|+.+.+. ...|++++|||.......+... ......+.+.|++.+++....+++..+.. ..-.
T Consensus 412 ~~~g~~~d~~a~~fL~~~N~~i~~~~p~~~~IAEd~s~~p~l~~p~~~GGlGFDykw~Mg~~~~~l~~l~~~~d~-~~~~ 490 (758)
T PLN02447 412 EYFGMATDVDAVVYLMLANDLLHGLYPEAVTIAEDVSGMPTLCRPVQEGGVGFDYRLAMAIPDKWIELLKEKRDE-DWSM 490 (758)
T ss_pred cccCCccChHHHHHHHHHHHHHHHhCCCeEEEEEcCCCCCCccccCCCCcCCcceEECCccchHHHHHHhhCCCc-ccCH
Confidence 22345567776662 5679999999976544322211 11122344999999999988888876521 1111
Q ss_pred HHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 011993 221 TRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQ 300 (473)
Q Consensus 221 ~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 300 (473)
..|..+... .+...+.|.+.+|||+....+..-... .+.++ +...+.+.........-....
T Consensus 491 ~~l~~sl~~----r~~~E~~I~y~eSHDevv~Gkksl~~~---l~d~~-----------my~~m~~~~~~~~~~~R~~~l 552 (758)
T PLN02447 491 GDIVHTLTN----RRYTEKCVAYAESHDQALVGDKTIAFW---LMDKE-----------MYDGMSTLTPATPVVDRGIAL 552 (758)
T ss_pred HHHHHHHhc----ccccCceEeccCCcCeeecCcchhHhh---hcchh-----------hhhcCCCChhhhhhHHHHHHH
Confidence 222222111 112236788999999976533221000 00000 001122221111101111222
Q ss_pred HHHHHHHHHHhcCc-eeeecccccccccCCC--CCCCCCCCCCCCcccccccc---cchhHHHHHHHHHHHHhcccCCCC
Q 011993 301 MKNFHLALMVSQGT-PMMLMGDEYGHTRYGN--NNSYGHDTAINNFQWGQLET---KKNSHYRFFSEVIKFRQSRRVFGR 374 (473)
Q Consensus 301 ~~~a~~~~l~~pG~-P~iy~G~E~g~~~~~~--~~~~~~~~~r~~~~W~~~~~---~~~~l~~~~~~L~~lR~~~p~l~~ 374 (473)
-|++.++++++||. +++|||+|+|.....+ +..-.......+++|+..+. ....+..|+|+|++|++++|+|..
T Consensus 553 hkmirl~~~~~pG~g~L~FMGnEFg~~ew~Dfpr~~n~ws~~~~~~~W~L~d~~~l~~~~l~~f~~~L~~l~~~~~~L~~ 632 (758)
T PLN02447 553 HKMIRLITMALGGEGYLNFMGNEFGHPEWIDFPREGNGWSYDKCRRRWDLADADHLRYKFLNAFDRAMMHLDEKYGFLTS 632 (758)
T ss_pred HHHHHHHHHhCCCCcceeecccccCCchhccCcccccccCcccccCCccccCCCchhhhHHHHHHHHHHHHHhcCccccC
Confidence 35566789999999 7999999999974211 10011122345689997643 256899999999999999999976
Q ss_pred cCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCC----cEEEECCCCCCCCCcEEEEeCCCCCCCCCCC
Q 011993 375 EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDDIVP 450 (473)
Q Consensus 375 g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 450 (473)
|..-.. . .+..++|+||.|. .++||+||++. ..+|.+|. .+.|+++++|+.....+...
T Consensus 633 ~~~~i~----~-----~d~~~~Viaf~R~-----~ll~V~NF~p~~s~~~Y~igvp~---~G~y~~ilnSD~~~fGG~~~ 695 (758)
T PLN02447 633 EHQYVS----R-----KDEGDKVIVFERG-----DLVFVFNFHPTNSYSDYRVGCDK---PGKYKIVLDSDAWEFGGFGR 695 (758)
T ss_pred CCceee----e-----ecCCCCEEEEEeC-----CeEEEEeCCCCCCCCCcEECCCC---CCeEEEEECCCchhcCCCCc
Confidence 532211 1 2577789999993 39999999973 34455554 58999999998765433211
Q ss_pred CC-------------CCCCCCeEEEcCCeEEEEEeC
Q 011993 451 EG-------------AAGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 451 ~~-------------~~~~~~~i~l~p~~~~vl~~~ 473 (473)
.. ......+|.|||++++||+.+
T Consensus 696 ~~~~~~~~~~~~~~~~~~~s~~v~iP~~~~~vl~~~ 731 (758)
T PLN02447 696 VDHDADHFTPEGNFDNRPHSFMVYAPSRTAVVYAPV 731 (758)
T ss_pred cCCCccEEecccCcCCCCcEEEEEeCCceEEEEEEC
Confidence 10 011234799999999999853
No 25
>PRK13840 sucrose phosphorylase; Provisional
Probab=100.00 E-value=3.8e-45 Score=365.72 Aligned_cols=372 Identities=13% Similarity=0.152 Sum_probs=250.5
Q ss_pred CCcc-ccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccc
Q 011993 1 MEFQ-RRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 79 (473)
Q Consensus 1 ~~~~-~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~ 79 (473)
|||| |+|+-|. ||+|+||++|||+||| ++||++|++ ||+||+|+|+||||. +|+||+
T Consensus 40 lPff~psp~sD~------GYdv~DY~~VDP~fGt--------~eDf~~L~~-----giklmlDlV~NHtS~---~h~WFq 97 (495)
T PRK13840 40 LPFFYPIDGADA------GFDPIDHTKVDPRLGD--------WDDVKALGK-----THDIMADLIVNHMSA---ESPQFQ 97 (495)
T ss_pred CCCccCCCCCCC------CCCCcChhhcCcccCC--------HHHHHHHHh-----CCeEEEEECCCcCCC---CcHHHH
Confidence 7999 7888555 9999999999999999 799999984 999999999999999 999999
Q ss_pred ccc--C--CCCccceeecCC-------------------CC---------------cccccCCcCCCCCCCHHHHHHHHH
Q 011993 80 SFR--G--IDNKVYYMVDGT-------------------GQ---------------LLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 80 ~~~--~--~~~~~~~~~~~~-------------------~~---------------~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
++. + .+..+||++.++ +. ...|...|||||++||+|+++|.+
T Consensus 98 d~l~~~~~s~Y~D~fi~~d~~~~~~~~~~~~~~if~~~~g~~~~~~~~~~~~~~~~w~tF~~~QpDLN~~NP~V~~~i~~ 177 (495)
T PRK13840 98 DVLAKGEASEYWPMFLTKDKVFPDGATEEDLAGIYRPRPGLPFTTYTLADGKTRLVWTTFTPQQIDIDVHSAAGWEYLMS 177 (495)
T ss_pred HHHHhCCCCCccCeEEECCCCCcCCCCCcccccccCCCCCCcccceEecCCCceEEeccCCcccceeCCCCHHHHHHHHH
Confidence 863 2 233788886221 00 112445689999999999999999
Q ss_pred HHHHHHHhcCccEEEEecccccccCCCCCCCCC----HHHHHHHHhccccCCceEEecCCCCcccc-ccCCCCCcchhhh
Q 011993 122 SLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNA----PPLIRAIAKDAILSRCKIIAEPWDCRGLY-LVGKFPNWDRWAE 196 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~----~~~~~~~~~~~~~~~~~li~E~~~~~~~~-~~~~~~~~~~~~~ 196 (473)
++++|+ +.||||||+||+.++.+.. |+.|.. .+++++++......+..+|+|.+..-+.. ..+. .....
T Consensus 178 il~fwl-~~GVDgfRLDAv~~l~K~~-gt~c~~~pe~~~~l~~lr~~~~~~~~~ll~Ei~~y~~~~~~~~~----e~~~v 251 (495)
T PRK13840 178 ILDRFA-ASHVTLIRLDAAGYAIKKA-GTSCFMIPETFEFIDRLAKEARARGMEVLVEIHSYYKTQIEIAK----KVDRV 251 (495)
T ss_pred HHHHHH-HCCCCEEEEechhhhhcCC-CCCcCCChHHHHHHHHHHHHhhhcCCEEEEeCccccCccccccc----cccEE
Confidence 999999 7899999999999998875 555553 34566665532234667899987533111 1111 11244
Q ss_pred hhhHHHHH-HHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeee-------eeccccccccCCC
Q 011993 197 WNGKYRDD-LRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDL-------VSYNYKHNEANGE 268 (473)
Q Consensus 197 ~~~~~~~~-l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~-------~~~~~~~~~~~~~ 268 (473)
||+..... +.++..++..... .++... |...+||+.|||.+.+-+. .+..+...+....
T Consensus 252 YnF~Lp~ll~~aL~~~~~~~L~---~~l~~~----------p~~~~n~L~~HDgIgl~d~~~~~~~~~gll~~~e~~~l~ 318 (495)
T PRK13840 252 YDFALPPLILHTLFTGDVEALA---HWLEIR----------PRNAVTVLDTHDGIGIIDVGADDRGLAGLLPDEQIDNLV 318 (495)
T ss_pred ecchhhHHHHHHHHhCCchHHH---HHHHhC----------CCccEEeeecCCCCCcccccccccccccCCCHHHHHHHH
Confidence 55555444 3345555543332 233321 2244799999999988222 2222222211111
Q ss_pred CCCCCCCCCCCCCCCCCC--CCC-----hHHHHHHH--HHHHHHHHHHHHHhcCceeeecccccccccCCC---CCCCCC
Q 011993 269 GGNDGCNDNFSWNCGFEG--ETD-----DASIKALR--SRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGN---NNSYGH 336 (473)
Q Consensus 269 ~~~~~~~~~~~~~~~~~g--~~~-----~~~~~~~~--~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~---~~~~~~ 336 (473)
....+-++..++.....+ +.+ .-..+.+. .+++.++.+++|++||||.||||+|+|..+... ....+|
T Consensus 319 ~~~~~~~~~~~~~~~~~~as~~~~Y~in~~~~~Al~~~d~r~lla~ai~~~~~GiP~iY~~~ll~~~ND~~~~~~t~~~R 398 (495)
T PRK13840 319 ETIHANSHGESRQATGAAASNLDLYQVNCTYYDALGRNDQDYLAARAIQFFAPGIPQVYYVGLLAGPNDMELLARTNVGR 398 (495)
T ss_pred HHHHHhccCceeecCCcccccccchhhhccHHHHhcCCcHHHHHHHHHHHcCCCcceeeechhhccCccHHHHHhcCCCc
Confidence 112223444555544333 111 00111111 357899999999999999999999999976431 122356
Q ss_pred CCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEe
Q 011993 337 DTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFN 415 (473)
Q Consensus 337 ~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N 415 (473)
.-.|..++|+.... .+..++.-.++|+++|+++|+|+ |++... ..++..++..|..+ .....+.+|
T Consensus 399 ~inR~~~~~~~~~~~l~~~v~~~l~~li~~R~~~~aF~-~~~~~~-----------~~~~~~~~~~~~~~-~~~~~~~~~ 465 (495)
T PRK13840 399 DINRHYYSTAEIDEALERPVVKALNALIRFRNEHPAFD-GAFSYA-----------ADGDTSLTLSWTAG-DSSASLTLD 465 (495)
T ss_pred ccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcccC-ceEEEe-----------cCCCCeEEEEEecC-CceEEEEEE
Confidence 67788899987653 34679999999999999999994 655432 35667788888775 778888889
Q ss_pred CCCCcEEEECC
Q 011993 416 AHDFFVKVSLP 426 (473)
Q Consensus 416 ~~~~~~~~~l~ 426 (473)
+......+...
T Consensus 466 ~~~~~~~~~~~ 476 (495)
T PRK13840 466 FAPKKGLITAL 476 (495)
T ss_pred cccceEEEEec
Confidence 98777666554
No 26
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=100.00 E-value=4.9e-43 Score=351.51 Aligned_cols=431 Identities=32% Similarity=0.527 Sum_probs=322.2
Q ss_pred CCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecC
Q 011993 15 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDG 94 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 94 (473)
..|||.|++||++-.+|||+.. +.. +.|||+||++||.+||-|+||+|.||++.+. ..+ ...|++.++..||+..+
T Consensus 285 ~s~GY~~~nFFapssrYgt~~s-~~r-i~efK~lVd~aHs~GI~VlLDVV~sHaa~n~-~d~-l~~fdGid~~~Yf~~~~ 360 (757)
T KOG0470|consen 285 ASWGYQVTNFFAPSSRYGTPES-PCR-INEFKELVDKAHSLGIEVLLDVVHSHAAKNS-KDG-LNMFDGIDNSVYFHSGP 360 (757)
T ss_pred hccCcceeEeecccccccCCCc-ccc-hHHHHHHHHHHhhCCcEEehhhhhhhcccCc-CCc-chhccCcCCceEEEeCC
Confidence 4799999999999999999722 222 5599999999999999999999999999832 233 44699999989999877
Q ss_pred CCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccccc-----------------CCCCCCCCCHHH
Q 011993 95 TGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR-----------------GTDGSPLNAPPL 157 (473)
Q Consensus 95 ~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~-----------------~~~~~~~~~~~~ 157 (473)
...++..|...+|+..|+|+++|++.+++||.+|+|||||+|.+..|.+ ...|++....+.
T Consensus 361 --r~~h~~~~~r~fn~~~~~V~rflL~nLr~WVtEY~vDGFRFD~~ssm~~~~~g~~~~f~gd~~~y~g~~g~~~d~~~l 438 (757)
T KOG0470|consen 361 --RGYHNSWCSRLFNYNHPVVLRFLLSNLRWWVTEYHVDGFRFDLVSSMLYTHHGNAAGFDGDYIEYFGTDGSFVDVDAL 438 (757)
T ss_pred --cccccccccccccCCCHHHHHHHHHHHHHHHHheeccceEEcchhhhhhhccccccccCCcchhhhccCCCcccccHH
Confidence 4444566788999999999999999999999999999999998777755 233566777778
Q ss_pred HH-HHHhccccCCce-EEecCCCCccccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHH-HHHHHhcCCcccccccC
Q 011993 158 IR-AIAKDAILSRCK-IIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKG-ILATRISGSSDLYRVNK 234 (473)
Q Consensus 158 ~~-~~~~~~~~~~~~-li~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~ 234 (473)
+. .++.+......- +|++.|+..+.+..+.+|.+..++.|+..|+..++.+..+...... .+++++.+....+..+.
T Consensus 439 ~~lmlAnd~~l~~~~~~It~~~D~~gm~~~~~~P~~~g~~~~d~~yr~~~~~~~k~~~~Lk~~~~~~~~~gs~~~~ltN~ 518 (757)
T KOG0470|consen 439 VYLMLANDPLLGGTPGLITDAEDVSGMPGLGCFPVWQGGAGFDGLYRLAVRLFDKWIQLLKGSSDAEWIMGSIDYTLTNR 518 (757)
T ss_pred HHHHhhcchhhhcCCcceEeeeccccCCCcCCccccccccccchhhhHHhhhHHHHHHHhccCchhheeccCcceeeecc
Confidence 87 566554443344 8899999998888888999999999998899999888877765544 57888888877777788
Q ss_pred CCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCc
Q 011993 235 RKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGT 314 (473)
Q Consensus 235 ~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~ 314 (473)
+.+...++|+++||+..+.+++.+..+ ++....+|+|...|.......++.+....+..+..+++..|+
T Consensus 519 R~~e~~v~y~~~HDq~~v~d~~T~af~-----------~l~d~~~~~~~~~g~p~~~~idR~r~~h~~~~lit~~lg~g~ 587 (757)
T KOG0470|consen 519 RYPEKSVNYAESHDQALVGDLVTIAFK-----------WLMDETSWNCGSEGTPGTSVIDRGRALHKMIRLITLGLGGGA 587 (757)
T ss_pred ccccceeeeeeccCCccccceeeecch-----------hhcchhhhcccccCCCcchHHHHHHHHHHHHHHHHHhccCcc
Confidence 899999999999999999998776543 345569999999999888888887777666666666677899
Q ss_pred eeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCC
Q 011993 315 PMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYD 394 (473)
Q Consensus 315 P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~ 394 (473)
|++|||+|+|.+..++...++.+....-.+|..-......++.+.+.|+++++.+..|-...........|+..- ...
T Consensus 588 pl~fmGdEfGh~e~~d~~~~~nn~s~~~~r~~~f~~~~~~~~r~~~~l~~F~~~~~~L~~~~~~~~~~~~~~~~k--~e~ 665 (757)
T KOG0470|consen 588 PLNFMGDEFGHPEWLDFPRYGNNFSYNYARRKRFDLADSDLLRYRRQLNSFDREMNLLEERNGFTTSELQYISLK--HEA 665 (757)
T ss_pred ceeccccccCCccccCCCcccCCccccccCccccccccchhhhhhhhhhhhhhHHHHHHHhcccccccccccccc--chh
Confidence 999999999999999988888877777777755544556888888999999999877766655544455555322 245
Q ss_pred CcEEEEEEecCCCCeEEEEEeC---------------CCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCe
Q 011993 395 SKFLAFTLHDNNGADIYLAFNA---------------HDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGST 459 (473)
Q Consensus 395 ~~v~a~~R~~~~~~~~lvv~N~---------------~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 459 (473)
+.+++|.| ...++|+|+ .+....|-++..+..+.|..+.++....+.+....+-.....-
T Consensus 666 ~~~i~fer-----~~~~~vfn~h~~~s~~d~~vg~n~~~~~~iVl~sd~p~~~~~~rl~dt~~~~p~d~~~~g~~~~l~V 740 (757)
T KOG0470|consen 666 DEVIVFER-----GPLLFVFNFHDSNSYIDYRVGFNAPGKYTIVLNSDRPKGGGWNRLDDTALFFPYDFRSEGRPVSLQV 740 (757)
T ss_pred hheeeecc-----CCeEEEEEecCCCCCceeEEEecCCCceEEEECCCCCCCCCccccccccccCccccccCCeeeeEEE
Confidence 56666665 234555555 3444444455545556666666665544333333332222223
Q ss_pred EEEcCCeEEE
Q 011993 460 YNLSPYSSIL 469 (473)
Q Consensus 460 i~l~p~~~~v 469 (473)
....++++++
T Consensus 741 Y~~~~~a~vl 750 (757)
T KOG0470|consen 741 YIPSRTATVL 750 (757)
T ss_pred EeccCcceEe
Confidence 3444555433
No 27
>PLN03244 alpha-amylase; Provisional
Probab=100.00 E-value=2.5e-42 Score=351.77 Aligned_cols=400 Identities=17% Similarity=0.165 Sum_probs=255.4
Q ss_pred CCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCC-ccccccCCCCccceeecCCCCc
Q 011993 20 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANP-YTTSFRGIDNKVYYMVDGTGQL 98 (473)
Q Consensus 20 ~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 98 (473)
.+++||+|+++|||+ +|||+||++||++||+||||+|+||++. +.. .+..|++.+ ..||..++.+..
T Consensus 426 ~vt~fFApssRYGTP--------eDLK~LVD~aH~~GI~VILDvV~NH~~~---d~~~GL~~fDGt~-~~Yf~~~~~g~~ 493 (872)
T PLN03244 426 KVTNFFAASSRYGTP--------DDFKRLVDEAHGLGLLVFLDIVHSYAAA---DEMVGLSLFDGSN-DCYFHTGKRGHH 493 (872)
T ss_pred ccCcccccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecCccCCC---ccccchhhcCCCc-cceeccCCCCcc
Confidence 589999999999996 9999999999999999999999999998 332 234565542 256665554433
Q ss_pred ccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc-cccccCCC-------CC-------CCCCHHHHHHHHh
Q 011993 99 LNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA-SVLCRGTD-------GS-------PLNAPPLIRAIAK 163 (473)
Q Consensus 99 ~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa-~~l~~~~~-------~~-------~~~~~~~~~~~~~ 163 (473)
. .+++ ..+|+.+|+|+++|++++++|+++|+|||||+|++ .+++.+.+ +. ...+..+|+.+..
T Consensus 494 ~-~WGs-~~fnyg~~EVr~FLLsna~yWleEyhIDGFRfDaVtSMLY~d~G~~~f~g~~~~y~n~~~d~dAv~fL~laN~ 571 (872)
T PLN03244 494 K-HWGT-RMFKYGDLDVLHFLISNLNWWITEYQIDGFQFHSLASMIYTHNGFASFNGDLDDYCNQYVDKDALMYLILANE 571 (872)
T ss_pred C-CCCC-ceecCCCHHHHHHHHHHHHHHHHHhCcCcceeecchhheeeccccccccCCccccccccCCchHHHHHHHHHH
Confidence 3 3443 57899999999999999999999999999999977 44544431 11 1234556666555
Q ss_pred --ccccCCceEEecCCCCccccccC-CCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcccccccCCCCCcc
Q 011993 164 --DAILSRCKIIAEPWDCRGLYLVG-KFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVNKRKPYHS 240 (473)
Q Consensus 164 --~~~~~~~~li~E~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 240 (473)
....|++++|||....-+..... ......+.+.|++.+++....++...+...-. ...|..... ...+.....
T Consensus 572 ~ih~~~P~~itIAEDsS~~P~vt~Pv~~GGLGFDYKWnMgwmdd~lkylk~~pderw~-~~~ItfsL~---~nrr~~ek~ 647 (872)
T PLN03244 572 ILHALHPKIITIAEDATYYPGLCEPTSQGGLGFDYYVNLSAPDMWLDFLDNIPDHEWS-MSKIVSTLI---ANKEYADKM 647 (872)
T ss_pred HHHHhCCCeEEEEEcCCCCcCccccCCCCCCCccceecCcchHHHHHHHHhCCCcccC-HHHHhhhhh---cccCCcceE
Confidence 24679999999965543222211 11122344889999999888888765533211 222222110 112223477
Q ss_pred eeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCce-eeec
Q 011993 241 INFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTP-MMLM 319 (473)
Q Consensus 241 ~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P-~iy~ 319 (473)
++|.||||+.-..+..-. ....+.. ..+.. .......+ +...-||+.+++++++|.| ++||
T Consensus 648 ~aYsESHDqaLvGdKTla-------f~l~d~~-----~y~~~-----~~~~vv~R-g~aLhKMiRllt~~~~G~kkLnFM 709 (872)
T PLN03244 648 LSYAENHNQSISGGRSFA-------EILFGAI-----DEDPL-----GGKELLDR-GCSLHKMIRLITFTIGGHAYLNFM 709 (872)
T ss_pred EEEecccceeccccchHH-------hhhcccc-----ccccc-----ccchhhhh-hhHHHHHHHHHHHHccCccceeec
Confidence 999999998532211100 0000000 00000 00001011 1113355556788899987 7999
Q ss_pred ccccccccCCC--CCCCCCCCCCCCcccccccc-cchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCc
Q 011993 320 GDEYGHTRYGN--NNSYGHDTAINNFQWGQLET-KKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSK 396 (473)
Q Consensus 320 G~E~g~~~~~~--~~~~~~~~~r~~~~W~~~~~-~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~ 396 (473)
|+|+|.....+ ...-+....-.+++|+.... ....+..|+|.|++|++++++|..|..-.. + .+..++
T Consensus 710 GNEFGhpe~~dfPr~gN~~s~~~arrdW~Lld~~~hk~L~~FdrdLn~Ly~~~~aL~~gf~wI~----~-----~d~e~k 780 (872)
T PLN03244 710 GNEFGHPERIEFPMPSNNFSFSLANRCWDLLENEVHHHLFSFDKDLMDLDENEGILSRGLPNIH----H-----VKDAAM 780 (872)
T ss_pred ccccCCchheeccccCCCccccccccCccccCChhHHHHHHHHHHHHHHHhcCcccccCCcEEe----e-----ecCCCC
Confidence 99999976431 11111112234679987652 356899999999999999999975542221 1 257778
Q ss_pred EEEEEEecCCCCeEEEEEeCCCC----cEEEECCCCCCCCCcEEEEeCCCCCCCCCCCC--C-C-----------CCCCC
Q 011993 397 FLAFTLHDNNGADIYLAFNAHDF----FVKVSLPPPPPKRQWFRVVDTNLESPDDIVPE--G-A-----------AGTGS 458 (473)
Q Consensus 397 v~a~~R~~~~~~~~lvv~N~~~~----~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~-----------~~~~~ 458 (473)
|+||.|. .+|||+||++. ...|.+|. .+.|.++++|+.....+.... . . .....
T Consensus 781 VIAF~R~-----~LLfVfNF~P~~sy~dYrIGVp~---~G~Y~eILNSD~~~FGG~g~~~~~~~~t~~~~~~~~gr~~sl 852 (872)
T PLN03244 781 VISFMRG-----PFLFIFNFHPSNSYEGYDVGVEE---AGEYQIILNSDETKYGGQGIIEEDHYLQRSINKRIDGLRNCL 852 (872)
T ss_pred EEEEEec-----CEEEEEeCCCCCCccCCEECCCC---CCeEEEEEeCChhhhCCCCccCCCceeecccccccCCCCceE
Confidence 9999993 49999999974 34455544 589999999987654322110 0 0 11234
Q ss_pred eEEEcCCeEEEEEe
Q 011993 459 TYNLSPYSSILLEA 472 (473)
Q Consensus 459 ~i~l~p~~~~vl~~ 472 (473)
+|.|||++++||+.
T Consensus 853 ~l~LPprsavVlk~ 866 (872)
T PLN03244 853 EVFLPSRTAQVYKL 866 (872)
T ss_pred EEEeCCCEEEEEEE
Confidence 68999999999975
No 28
>PLN00196 alpha-amylase; Provisional
Probab=100.00 E-value=2.2e-42 Score=344.83 Aligned_cols=298 Identities=17% Similarity=0.271 Sum_probs=195.7
Q ss_pred CCCCCcCCCCCcccCCC-CCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCC--CCccccccCCC---
Q 011993 12 HMVNTWGYSTINFFSPM-SRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA--NPYTTSFRGID--- 85 (473)
Q Consensus 12 ~~~~~~GY~~~d~~~vd-p~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~--~~~~~~~~~~~--- 85 (473)
++.++|||++.|||.|| ++|||+ +||++||++||++||+||+|+|+||++.+..+ .+|. .+.+..
T Consensus 68 ~s~s~hGY~~~D~y~ld~~~fGt~--------~elk~Lv~~aH~~GIkVilDvV~NH~~~~~~~~~~~y~-~~~~~~~~~ 138 (428)
T PLN00196 68 HSVSEQGYMPGRLYDLDASKYGNE--------AQLKSLIEAFHGKGVQVIADIVINHRTAEHKDGRGIYC-LFEGGTPDS 138 (428)
T ss_pred CCCCCCCCCccccCCCCcccCCCH--------HHHHHHHHHHHHCCCEEEEEECccCcccccccCCCceE-ECCCCCCCC
Confidence 34678999999999999 599996 99999999999999999999999999972111 1222 122111
Q ss_pred Cccceee----c------CCCCccc--ccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCC
Q 011993 86 NKVYYMV----D------GTGQLLN--YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLN 153 (473)
Q Consensus 86 ~~~~~~~----~------~~~~~~~--~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~ 153 (473)
...|+.. + ..+.+.. .....||||++||+|+++|++++++|++++||||||+|+|++++.+
T Consensus 139 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~lpDLn~~np~V~~~l~~~~~wl~~~~GiDG~RlD~ak~~~~~------- 211 (428)
T PLN00196 139 RLDWGPHMICRDDTQYSDGTGNLDTGADFAAAPDIDHLNKRVQRELIGWLLWLKSDIGFDAWRLDFAKGYSAE------- 211 (428)
T ss_pred ccccccccCCCCcccccCCCCceeCCCCCCCCCccCCCCHHHHHHHHHHHHHHhhCCCCCEEEeehhhhCCHH-------
Confidence 1344321 0 0111110 1134799999999999999999998887899999999999998655
Q ss_pred CHHHHHHHHhccccCCceEEecCCCCccccccCCCCCcchhhhhhhHHHHHHHHHHcCCC---CcHHHH--------HHH
Q 011993 154 APPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDP---GMKGIL--------ATR 222 (473)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~li~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~~~--------~~~ 222 (473)
+++++.+. .+| .++|||.|.....+..+.... . ....+..+..++.... .....| ...
T Consensus 212 ---f~~~~v~~-~~p-~f~VGE~W~~~~~~~~~~~~~-----~-~~~~r~~l~~~l~~~g~~~~~~~~fDF~~~~~~~~~ 280 (428)
T PLN00196 212 ---VAKVYIDG-TEP-SFAVAEIWTSMAYGGDGKPEY-----D-QNAHRQELVNWVDRVGGAASPATVFDFTTKGILNVA 280 (428)
T ss_pred ---HHHHHHHc-cCC-cEEEEEEeccccccccCCccc-----c-chhhHHHHHHHHHhcCCccCcceeecccchHHHHHH
Confidence 46665543 345 789999998643222111110 0 0001111222222110 000000 000
Q ss_pred hcC-Cccccc-------ccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHH
Q 011993 223 ISG-SSDLYR-------VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIK 294 (473)
Q Consensus 223 l~~-~~~~~~-------~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 294 (473)
+.. ...++. .-...|..+|+|++|||+.|+..+...
T Consensus 281 ~~~~~~~l~~~~~~~~~~~~~~P~~aVtFvdNHDT~r~~~~~~~------------------------------------ 324 (428)
T PLN00196 281 VEGELWRLRGADGKAPGVIGWWPAKAVTFVDNHDTGSTQHMWPF------------------------------------ 324 (428)
T ss_pred hcCCchhhhhhcccCcchhhcChhhceeeccCCCCccccccCCC------------------------------------
Confidence 100 001101 012356689999999999886443210
Q ss_pred HHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCC
Q 011993 295 ALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGR 374 (473)
Q Consensus 295 ~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~ 374 (473)
..+++++|.+++|++||+||||||+= .+| .+.+.+++|+++|++++++..
T Consensus 325 --~~~~~~lAyA~iLT~pG~P~IyYg~~--------------------~~~--------~~~~~i~~Li~~Rk~~~~~~~ 374 (428)
T PLN00196 325 --PSDKVMQGYAYILTHPGNPCIFYDHF--------------------FDW--------GLKEEIAALVSIRNRNGITPT 374 (428)
T ss_pred --ccchHHHHHHHHHcCCCcceEeeCCC--------------------cCc--------cHHHHHHHHHHHHHhCCCcCC
Confidence 03346899999999999999999941 123 255699999999999999999
Q ss_pred cCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCC
Q 011993 375 EDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAH 417 (473)
Q Consensus 375 g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~ 417 (473)
|++..+ ..+++++++.| ++.++|.+|..
T Consensus 375 g~~~~~-----------~a~~d~yv~~~----~~~~~~~i~~~ 402 (428)
T PLN00196 375 SELRIM-----------EADADLYLAEI----DGKVIVKIGSR 402 (428)
T ss_pred ccEEEE-----------EecCCEEEEEE----CCEEEEEECCC
Confidence 998775 45678999999 57899999975
No 29
>PLN02361 alpha-amylase
Probab=100.00 E-value=6.3e-41 Score=330.22 Aligned_cols=299 Identities=17% Similarity=0.251 Sum_probs=191.0
Q ss_pred CCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCC-CCCccccccCCCCccce
Q 011993 12 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADD-ANPYTTSFRGIDNKVYY 90 (473)
Q Consensus 12 ~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~-~~~~~~~~~~~~~~~~~ 90 (473)
++.++|||++.|||.+||+|||+ +||++||++||++||+||+|+|+||++.... ...++..|.+.. .+|.
T Consensus 53 ~~~~~~GY~~~d~y~~~~~~Gt~--------~el~~li~~~h~~gi~vi~D~V~NH~~g~~~~~~~~y~~~~g~~-~~wd 123 (401)
T PLN02361 53 QSLAPEGYLPQNLYSLNSAYGSE--------HLLKSLLRKMKQYNVRAMADIVINHRVGTTQGHGGMYNRYDGIP-LPWD 123 (401)
T ss_pred cCCCCCCCCcccccccCcccCCH--------HHHHHHHHHHHHcCCEEEEEEccccccCCCCCCCCCcccCCCCc-CCCC
Confidence 34667999999999999999995 9999999999999999999999999854211 112232333210 0111
Q ss_pred ee----cCC--CCcc--cccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHH
Q 011993 91 MV----DGT--GQLL--NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIA 162 (473)
Q Consensus 91 ~~----~~~--~~~~--~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~ 162 (473)
.. +.. ++.. ......||||++||+|++++++++++|++++||||||+|++++++.+ +++++.
T Consensus 124 ~~~~~~~~~g~~~~~~~~~~~~lpDLd~~np~Vr~~l~~~~~wl~~~~GiDGfRlDavk~~~~~----------f~~~~~ 193 (401)
T PLN02361 124 EHAVTSCTGGLGNRSTGDNFNGVPNIDHTQHFVRKDIIGWLIWLRNDVGFQDFRFDFAKGYSAK----------FVKEYI 193 (401)
T ss_pred ccccccccCCCCCccCCCCCccCCccCCCCHHHHHHHHHHHHHHHhcCCCCEEEEeccccCCHH----------HHHHHH
Confidence 11 011 1111 11233799999999999999999987776699999999999999655 477776
Q ss_pred hccccCCceEEecCCCCccccccCCCCCcchhhhh-hhHHHHHHHHHHcCCCCcH--------HHHHHHhcCC-cccc--
Q 011993 163 KDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEW-NGKYRDDLRKFIKGDPGMK--------GILATRISGS-SDLY-- 230 (473)
Q Consensus 163 ~~~~~~~~~li~E~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~--------~~~~~~l~~~-~~~~-- 230 (473)
+. .+| +++|||.|.....-..... ..| ....+..+..++....+.. ..+...+... ..+.
T Consensus 194 ~~-~~p-~f~VGE~w~~~~~~~~d~~------~~y~~~~~~~~l~~~~~~~~~~~~~fDF~l~~~l~~a~~~~~~~l~~~ 265 (401)
T PLN02361 194 EA-AKP-LFSVGEYWDSCNYSGPDYR------LDYNQDSHRQRIVNWIDGTGGLSAAFDFTTKGILQEAVKGQWWRLRDA 265 (401)
T ss_pred Hh-hCC-eEEEEEEecCCCcCCcccc------cchhhhhHHHHHHHHHHhcCCcceeecHHHHHHHHHHHhhhHHHHhhh
Confidence 63 344 8899999976321000000 000 0122233344433221111 1111111000 0000
Q ss_pred -----cccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHH
Q 011993 231 -----RVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFH 305 (473)
Q Consensus 231 -----~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~ 305 (473)
......|..+|+|++|||+.|...+.. .+.+++++|.
T Consensus 266 ~~~~~~~~~~~p~~aVTFvdNHDt~r~~~~~~--------------------------------------~~~~~~~~Ay 307 (401)
T PLN02361 266 QGKPPGVMGWWPSRAVTFIDNHDTGSTQAHWP--------------------------------------FPSDHIMEGY 307 (401)
T ss_pred hcCCcchhhcChhhceEecccCcCcchhhccC--------------------------------------CchHHHHHHH
Confidence 011234568899999999977532211 0145678899
Q ss_pred HHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCCCccee
Q 011993 306 LALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTW 385 (473)
Q Consensus 306 ~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~ 385 (473)
+++|+.||+|+||||+= .+|+. ++.+++++|+++||+++++..|+...+
T Consensus 308 A~iLT~pG~P~Vyyg~~--------------------~~~~~------~~~~~I~~Li~lRk~~~~~~~s~~~i~----- 356 (401)
T PLN02361 308 AYILTHPGIPTVFYDHF--------------------YDWGG------SIHDQIVKLIDIRKRQDIHSRSSIRIL----- 356 (401)
T ss_pred HHHHCCCCcCeEeeccc--------------------cCCCh------HHHHHHHHHHHHHHhCCCCCCCcEEEE-----
Confidence 99999999999999961 12332 688999999999999999999988765
Q ss_pred eccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 011993 386 HEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 416 (473)
Q Consensus 386 ~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~ 416 (473)
...+.+++-.- +++++|=++.
T Consensus 357 ------~a~~~~y~a~i----~~~~~~k~g~ 377 (401)
T PLN02361 357 ------EAQSNLYSAII----DEKLCMKIGD 377 (401)
T ss_pred ------EecCCeEEEEE----CCeEEEEecC
Confidence 45666776666 3444444433
No 30
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=100.00 E-value=5.8e-41 Score=340.60 Aligned_cols=402 Identities=21% Similarity=0.325 Sum_probs=270.2
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||....|. .++|||+++-||++..+|||+ +|||+||++||++||.||||+|+||+++ +..++..
T Consensus 185 MPv~e~p~-----~~sWGYq~~g~yAp~sryGtP--------edfk~fVD~aH~~GIgViLD~V~~HF~~---d~~~L~~ 248 (628)
T COG0296 185 MPVAEHPG-----DRSWGYQGTGYYAPTSRYGTP--------EDFKALVDAAHQAGIGVILDWVPNHFPP---DGNYLAR 248 (628)
T ss_pred cccccCCC-----CCCCCCCcceeccccccCCCH--------HHHHHHHHHHHHcCCEEEEEecCCcCCC---Ccchhhh
Confidence 55555555 467999999999999999998 9999999999999999999999999999 8888888
Q ss_pred ccCCCCccceeecCCCCcccccCCcCCC-CCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccccc-CCC---CCC----
Q 011993 81 FRGIDNKVYYMVDGTGQLLNYAGCGNTL-NCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCR-GTD---GSP---- 151 (473)
Q Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~dl-n~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~-~~~---~~~---- 151 (473)
|++... |...++....+ .+|+.-+ |+..++||.+|++++++|+++|+|||||+||+..|.. +.. +.|
T Consensus 249 fdg~~~--~e~~~~~~~~~--~~Wg~~i~~~gr~EVR~Fll~nal~Wl~~yHiDGlRvDAV~smly~d~~~~~~~~~~n~ 324 (628)
T COG0296 249 FDGTFL--YEHEDPRRGEH--TDWGTAIFNYGRNEVRNFLLANALYWLEEYHIDGLRVDAVASMLYLDYSRAEGEWVPNE 324 (628)
T ss_pred cCCccc--cccCCcccccC--CCcccchhccCcHHHHHHHHHHHHHHHHHhCCcceeeehhhhhhccchhhhhhcccccc
Confidence 876522 22223332222 2233333 4448999999999999999999999999998887643 211 112
Q ss_pred ------CCCHHHHHHHHh--ccccCCceEEecCCCCccccccCC-CCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHH
Q 011993 152 ------LNAPPLIRAIAK--DAILSRCKIIAEPWDCRGLYLVGK-FPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATR 222 (473)
Q Consensus 152 ------~~~~~~~~~~~~--~~~~~~~~li~E~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 222 (473)
..+.+++++... ....|+++.|+|.|+...-..... .....+...||+.++.....++...+.....-...
T Consensus 325 ~ggr~n~~a~efl~~~n~~i~~~~pg~~~iaeestd~~~~t~~~~~gG~gf~yk~nmg~m~D~~~y~~~~~~~r~~~h~~ 404 (628)
T COG0296 325 YGGRENLEAAEFLRNLNSLIHEEEPGAMTIAEESTDDPHVTLPVAIGGLGFGYKWNMGWMHDTLFYFGKDPVYRKYHHGE 404 (628)
T ss_pred cCCcccHHHHHHhhhhhhhhcccCCCceeeeeeccCCCCceeeecccccchhhhhhhhhHhhHHHhcccCccccccccCC
Confidence 222345555444 255789999999987662221111 01112237788887777776766554433322222
Q ss_pred hcCCcccccccCCCCCcceeEEEecCCC--ceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHH
Q 011993 223 ISGSSDLYRVNKRKPYHSINFIIAHDGF--TLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQ 300 (473)
Q Consensus 223 l~~~~~~~~~~~~~~~~~~~f~~nHD~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 300 (473)
++.... ...+..++++.|||++ .-..+.. .++|. .......
T Consensus 405 ~tf~~~------y~~se~~~l~~sHDevvhGk~sl~~-------------------------rm~g~------~~~~~a~ 447 (628)
T COG0296 405 LTFGLL------YAFSENVVLPLSHDEVVHGKRSLGE-------------------------RMPGD------AWQKFAN 447 (628)
T ss_pred Cccccc------cccceeEeccccccceeecccchhc-------------------------cCCcc------hhhhHHH
Confidence 222211 1334678999999996 2222211 11121 2334778
Q ss_pred HHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc---c--chhHHHHHHHHHHHHhcccCCCCc
Q 011993 301 MKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET---K--KNSHYRFFSEVIKFRQSRRVFGRE 375 (473)
Q Consensus 301 ~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~---~--~~~l~~~~~~L~~lR~~~p~l~~g 375 (473)
+++++++|++.||+|++|||+|+|...+... ....+|..... . +..+..+.+.|.++-+..+.+..-
T Consensus 448 lr~~~a~~~~~Pgk~LLFMG~Efgq~~e~~~--------~~~~~w~~L~~~~~~g~~~~~~~~~~~ln~~y~~~~~l~~~ 519 (628)
T COG0296 448 LRALAAYMWLHPGKPLLFMGEEFGQGREWNF--------FSSLDWLLLDQAVREGRHKEFRRLVRDLNALYRIPDPLHEQ 519 (628)
T ss_pred HHHHHHHHHhCCCceeeecchhhccCCCCcc--------cCCCChhhhhhccccchHHHHHHHHHhhHHhhccCCccchh
Confidence 9999999999999999999999999987653 34567744331 2 567888888888888888999988
Q ss_pred CCCCCCcceeeccccCCCCCcEEEEEEe--cCCCCeEEEEEeCCCC-cEEEECCCCCCCCCcEEEEeCCCCCCCCCC---
Q 011993 376 DFLNINDVTWHEDNWDNYDSKFLAFTLH--DNNGADIYLAFNAHDF-FVKVSLPPPPPKRQWFRVVDTNLESPDDIV--- 449 (473)
Q Consensus 376 ~~~~~~~~~~~~~~~~~~~~~v~a~~R~--~~~~~~~lvv~N~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~--- 449 (473)
++.. ....|.... ....+|++|.|. ..+.+.+++|.|+... ...+.++.+ ..++|+++++++.....+..
T Consensus 520 ~~~~-~~~~W~~~~--~~~~~v~af~R~l~~~~~~~lv~~~n~~~~~~~~y~~~~~-~~g~~~~~lntd~~~~ggs~~~~ 595 (628)
T COG0296 520 DFQP-EGFEWIDAD--DAENSVLAFYRRLLALRHEHLVVVNNFTPVPRVDYRVGVP-VAGRWREVLNTDLAEYGGSGAGN 595 (628)
T ss_pred hhcc-cCCceeecC--chhhhHHHHHHHHhhcCCceEEEEeCCCCCcccccccCCc-ccccEEEeccchHHHhcCCcccc
Confidence 8876 567777554 233389999995 3435668888888763 444555554 46899999998544322111
Q ss_pred ------CCCC----CCCCCeEEEcCCeEEEEE
Q 011993 450 ------PEGA----AGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 450 ------~~~~----~~~~~~i~l~p~~~~vl~ 471 (473)
.+.. -.....++|+|.++++|+
T Consensus 596 ~~~~~~~~~~~~~~~~~~~~~~lpp~~~~~l~ 627 (628)
T COG0296 596 LGLPVSGEDILWHGREWSLSLTLPPLAALVLK 627 (628)
T ss_pred ccceecceeeeccCcceeeEEecCCceeeEee
Confidence 1111 112457899999999986
No 31
>PF00128 Alpha-amylase: Alpha amylase, catalytic domain; InterPro: IPR006047 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain, such as alpha-amylase, belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins. This entry represents the catalytic domain found in several protein members of this family. It has a structure consisting of an 8 stranded alpha/beta barrel that contains the active site, interrupted by a ~70 amino acid calcium-binding domain protruding between beta strand 3 and alpha helix 3, and a carboxyl-terminal Greek key beta-barrel domain []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 3FAX_A 3FAW_A 2DH3_B 2DH2_A 1CIU_A 1A47_A 3BMW_A 3BMV_A 2FH8_A 2FH6_A ....
Probab=100.00 E-value=4.4e-42 Score=336.37 Aligned_cols=256 Identities=27% Similarity=0.400 Sum_probs=175.0
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
||++++|. ++|||+++||++|||+||| ++||++||++||++||+||||+|+||++. +|+|++.
T Consensus 24 ~Pi~~~~~------~~~gY~~~d~~~vd~~~Gt--------~~d~~~Lv~~~h~~gi~VilD~V~NH~~~---~~~~~~~ 86 (316)
T PF00128_consen 24 SPIFESPN------GYHGYDPSDYYAVDPRFGT--------MEDFKELVDAAHKRGIKVILDVVPNHTSD---DHPWFQD 86 (316)
T ss_dssp SS-EESSS------STTTTSESEEEEESTTTBH--------HHHHHHHHHHHHHTTCEEEEEEETSEEET---TSHHHHH
T ss_pred cccccccc------ccccccceeeeccccccch--------hhhhhhhhhccccccceEEEeeecccccc---ccccccc
Confidence 57777444 6789999999999999999 59999999999999999999999999999 9999754
Q ss_pred cc---CCCCccceeecC-----CCCc---------c--------cccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEE
Q 011993 81 FR---GIDNKVYYMVDG-----TGQL---------L--------NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGF 135 (473)
Q Consensus 81 ~~---~~~~~~~~~~~~-----~~~~---------~--------~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGf 135 (473)
.. ....++||.|.+ .+.. . .+...+++||++||+||++|++++++|+ ++|||||
T Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~i~~~~~~w~-~~giDGf 165 (316)
T PF00128_consen 87 SLNYFDNPYSDYYYWRDGEGSPPGNWYSYFGGSNWEYDDWGDEYQFWSDLPDLNYENPEVREYIIDVLKFWI-EEGIDGF 165 (316)
T ss_dssp HHTHTTSTTGTTBEEESBTSTTSSTBBCSTTTSSEESCHHTHCHSSSTTSEEBETTSHHHHHHHHHHHHHHH-HTTESEE
T ss_pred cccccccccccceeecccccccccccccccccccccccccccccccccccchhhhhhhhhhhhhcccccchh-hceEeEE
Confidence 21 122467777531 1111 0 1334468999999999999999999999 6789999
Q ss_pred EEecccccccCCCCCCCCCHHHHHHHHhc--cccCCceEEecCCCCccc----cc-cCCCCCcchhhhhhhHHHHHHHH-
Q 011993 136 RFDLASVLCRGTDGSPLNAPPLIRAIAKD--AILSRCKIIAEPWDCRGL----YL-VGKFPNWDRWAEWNGKYRDDLRK- 207 (473)
Q Consensus 136 R~Daa~~l~~~~~~~~~~~~~~~~~~~~~--~~~~~~~li~E~~~~~~~----~~-~~~~~~~~~~~~~~~~~~~~l~~- 207 (473)
|||+|+++..+ +++++..+ ...|+++++||.|..... +. ..... ....++.........
T Consensus 166 R~D~~~~~~~~----------~~~~~~~~~~~~~~~~~~i~E~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 232 (316)
T PF00128_consen 166 RLDAAKHIPKE----------FWKEFRDEVKEEKPDFFLIGEVWGGDNEDLRQYAYDGYFD---LDSVFDFPDYGLRSSF 232 (316)
T ss_dssp EETTGGGSSHH----------HHHHHHHHHHHHHTTSEEEEEESSSSHHHHHHHHHHGTTS---HSEEEHHHHHHHHHHH
T ss_pred EEccccccchh----------hHHHHhhhhhhhccccceeeeeccCCccccchhhhccccc---cchhhcccccccccch
Confidence 99999999664 45555553 223899999999976531 11 11111 000111111112122
Q ss_pred --HHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCC
Q 011993 208 --FIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFE 285 (473)
Q Consensus 208 --~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 285 (473)
...........+...+......+ ..+...++|++|||+.|+......
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~f~~nHD~~r~~~~~~~--------------------------- 281 (316)
T PF00128_consen 233 FDFWRHGDGDASDLANWLSSWQSSY----PDPYRAVNFLENHDTPRFASRFGN--------------------------- 281 (316)
T ss_dssp HHHHTTTSSHHHHHHHHHHHHHHHS----TTGGGEEEESSHTTSSTHHHHTTT---------------------------
T ss_pred hhhhccccchhhhhhhhhhhhhhhh----cccceeeecccccccccchhhhcc---------------------------
Confidence 22333333344443333221111 124578999999999885432220
Q ss_pred CCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCC
Q 011993 286 GETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYG 329 (473)
Q Consensus 286 g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~ 329 (473)
...+++++++++|++||+|+||||||+|+.+..
T Consensus 282 -----------~~~~~~~a~~~ll~~pG~P~iy~G~E~g~~~~~ 314 (316)
T PF00128_consen 282 -----------NRDRLKLALAFLLTSPGIPMIYYGDEIGMTGSK 314 (316)
T ss_dssp -----------HHHHHHHHHHHHHHSSSEEEEETTGGGTBBTSS
T ss_pred -----------cchHHHHHHHHHHcCCCccEEEeChhccCCCCC
Confidence 022689999999999999999999999998853
No 32
>TIGR02455 TreS_stutzeri trehalose synthase, Pseudomonas stutzeri type. Trehalose synthase catalyzes a one-step conversion of maltose to trehalose. This is an alternative to the OtsAB and TreYZ pathways. This family includes a characterized example from Pseudomonas stutzeri plus very closely related sequences from other Pseudomonads. Cutoff scores are set to find a more distantly related sequence from Desulfovibrio vulgaris, likely to be functionally equivalent, between trusted and noise limits.
Probab=100.00 E-value=6.8e-40 Score=328.50 Aligned_cols=422 Identities=16% Similarity=0.126 Sum_probs=268.3
Q ss_pred CCcccc---------CCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCC
Q 011993 1 MEFQRR---------RNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA 71 (473)
Q Consensus 1 ~~~~~~---------~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~ 71 (473)
.|||++ |+-|. ||+++|| .|||+||| ++||++|+++||++||+||+|+|+||||.
T Consensus 94 ~P~~~SGgi~g~~~tP~~D~------gyDi~d~-~Idp~~GT--------~eDf~~L~~~Ah~~G~~vi~DlVpnHTs~- 157 (688)
T TIGR02455 94 GPIKLSGGIRGREFTPSIDG------NFDRISF-DIDPLLGS--------EEELIQLSRMAAAHNAITIDDIIPAHTGK- 157 (688)
T ss_pred CcceecccccccCCCCCCCC------CCCcccC-ccCcccCC--------HHHHHHHHHHHHHCCCEEEEEeCCCCCCC-
Confidence 499999 99888 9999994 99999999 69999999999999999999999999999
Q ss_pred CCCCCcccccc--CCCCccce-----------eec--CCC----------------------C-----------------
Q 011993 72 DDANPYTTSFR--GIDNKVYY-----------MVD--GTG----------------------Q----------------- 97 (473)
Q Consensus 72 ~~~~~~~~~~~--~~~~~~~~-----------~~~--~~~----------------------~----------------- 97 (473)
.|+ |+..+ ..+.++|| .|. +.+ .
T Consensus 158 --ghd-F~lAr~~~~~Y~g~Y~mvei~~~~W~vwpd~~~~~~~~~l~~~~~~~L~~~g~i~~~l~rviF~~pg~e~s~Wt 234 (688)
T TIGR02455 158 --GAD-FRLAELAHGDYPGLYHMVEIREEDWALLPEVPAGRDAVNLLPAQCDELKAKHYIVGQLQRVIFFEPGIKDTDWS 234 (688)
T ss_pred --Ccc-hHHHhhcCCCCCCceeeccccccccccCCCCCcccccccccHHHHHHHhhccCcccccccceecCCCcccCCce
Confidence 888 76433 23447888 542 111 0
Q ss_pred -----------------cccccCCcCCCCCCCHH--HHHHHH-HHHHHHHHhcCccEEEEecccccccCCC---CCCCCC
Q 011993 98 -----------------LLNYAGCGNTLNCNHPV--VMELIL-DSLRHWVVEYHVDGFRFDLASVLCRGTD---GSPLNA 154 (473)
Q Consensus 98 -----------------~~~~~~~~~dln~~np~--V~~~i~-~~~~~w~~~~giDGfR~Daa~~l~~~~~---~~~~~~ 154 (473)
.+.|...||+|||.||. |++.|+ +++.+|+ ++|+||||+||+.++..+.. ..|.+.
T Consensus 235 ~d~~v~g~dG~~Rrw~Y~H~F~~~QPdLNw~dPs~av~~~~~gdal~~w~-~lG~~GfRLDAvpfLg~e~~~~~~~~~e~ 313 (688)
T TIGR02455 235 ATGEITGVDGKTRRWVYLHYFKEGQPSLNWLDPTFAAQQLIIGDALHAID-CLGARGLRLDANGFLGVERRAEGTAWSEG 313 (688)
T ss_pred ecccccCCCccchhhhhhhhccCCCCccCccCccHHHHHHHHHHHHHHHH-HhccccceeccccceeeecCCCCCCCCcc
Confidence 01233448999999999 999999 8999999 89999999999999876542 245556
Q ss_pred HHHHHHHHh----ccccCCceEEecCCCCc---cccccCCCCCcchhhhhhhHHHHHH-HHHHcCCCCcHHHHHHHhcCC
Q 011993 155 PPLIRAIAK----DAILSRCKIIAEPWDCR---GLYLVGKFPNWDRWAEWNGKYRDDL-RKFIKGDPGMKGILATRISGS 226 (473)
Q Consensus 155 ~~~~~~~~~----~~~~~~~~li~E~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~~~~l~~~ 226 (473)
.+++++.++ ...+++.++++|.--.. ..++.++.+ -.+++..+..+ ..+..++.. -+...|...
T Consensus 314 h~ll~~~r~~l~~~~r~~Gg~ll~E~nl~~~d~~~~~g~~~d-----l~~dF~t~p~~~~AL~tgda~---pLr~~L~~~ 385 (688)
T TIGR02455 314 HPLSLTGNQLIAGAIRKAGGFSFQELNLTIDDIAAMSHGGAD-----LSYDFITRPAYHHALLTGDTE---FLRLMLKEM 385 (688)
T ss_pred CHHHHHHHHHHHHhhhcCCeeEeeeccCCHHHHHHHhCCCcc-----eeecccccHHHHHHHHcCCHH---HHHHHHHhh
Confidence 677666665 25679999999953222 233333322 22222222222 233445433 223333322
Q ss_pred cccccccCCCCCcceeEEEecCCCceeee--e-----------ecc------ccccccCCCCCCCCCCCCCCCC------
Q 011993 227 SDLYRVNKRKPYHSINFIIAHDGFTLYDL--V-----------SYN------YKHNEANGEGGNDGCNDNFSWN------ 281 (473)
Q Consensus 227 ~~~~~~~~~~~~~~~~f~~nHD~~~~~~~--~-----------~~~------~~~~~~~~~~~~~~~~~~~~~~------ 281 (473)
... .-.+.+.++|+.|||+..+.-. . +.. ..+.+...-..- .++..+++
T Consensus 386 ~~~----gid~~~~~~~LrNHDELtlelvh~~~~~~~~~~~~~g~~~~g~~l~e~~R~~m~~~~--a~d~~p~~m~~~~~ 459 (688)
T TIGR02455 386 HAF----GIDPASLIHALQNHDELTLELVHFWTLHAHDHYHYKGQTLPGGHLREHIREEIYERL--SGEHAPYNLKFVTN 459 (688)
T ss_pred hcC----CCCchhhhhhccCccccchhhhhhcccccccccccccccCCccccCHHHHHHHHHHh--cCCCccccceEEec
Confidence 111 1134578999999999765321 0 000 000000000000 00110111
Q ss_pred ---CC-------CCCCC-ChHHHHHHHHHHHHHHHHHHHH----hcCceeeecc--------------cccccccCC--C
Q 011993 282 ---CG-------FEGET-DDASIKALRSRQMKNFHLALMV----SQGTPMMLMG--------------DEYGHTRYG--N 330 (473)
Q Consensus 282 ---~~-------~~g~~-~~~~~~~~~~~~~~~a~~~~l~----~pG~P~iy~G--------------~E~g~~~~~--~ 330 (473)
|. -.|.. ..++.. -..++.+++.+++++ +||+|+|||| +|+||-..- +
T Consensus 460 gi~~t~a~~ia~~~GIRrLap~~~-~d~~~I~~~h~LL~s~na~lPG~p~L~ygdl~GalpL~~~~v~deigmGD~~wl~ 538 (688)
T TIGR02455 460 GIACTTASLIAAALGIRDLDAIGP-ADIELIKKLHILLVMFNAMQPGVFALSGWDLVGALPLAAEAVAELMGDGDTRWIH 538 (688)
T ss_pred cccccchhhhhhhcCCccchhhCC-CCHHHHHHHHHHHHHhhccCCCceEeecccccccccccccchhhhhccCcccccc
Confidence 00 11111 111111 125668889999999 9999999999 999987421 1
Q ss_pred CCCCCCCC------------CCCCccccccc---ccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCC
Q 011993 331 NNSYGHDT------------AINNFQWGQLE---TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDS 395 (473)
Q Consensus 331 ~~~~~~~~------------~r~~~~W~~~~---~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~ 395 (473)
+..+.... .+.+-.....+ ..+.|+++..++|++.|+.++++..+.+..+ ...++
T Consensus 539 rggfs~~~~~p~~~~s~~~lP~~~~~Ygnv~~Ql~dp~S~l~~l~~il~vR~~~~i~~~~~~~~~----------~~~~~ 608 (688)
T TIGR02455 539 RGGYDLADLAPEAEASAEGLPKARALYGSLAEQLDEPDSFACKLKKILAVRQAYDIAASKQILIP----------DVQAP 608 (688)
T ss_pred CCCcccCCCCchhhhccCCCCCCcCCCCCHHHHhhCCccHHHHHHHHHHHHHhCCcccCceeeec----------CCCCC
Confidence 11111111 00111111111 4568999999999999999999999988765 36889
Q ss_pred cEEEEEEecCC-CCeEEEEEeCCCCcEEEECCCC-CCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEEeC
Q 011993 396 KFLAFTLHDNN-GADIYLAFNAHDFFVKVSLPPP-PPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEAK 473 (473)
Q Consensus 396 ~v~a~~R~~~~-~~~~lvv~N~~~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~~ 473 (473)
.|+++.|...+ ++.+|+|+||+.+++.+.|... ..++.+.++++.......+ -.....|+|+||+.++|..+
T Consensus 609 gvLa~v~~l~~~~~~~L~v~Nfs~~~~~~~l~l~~~~~~~~~dl~~~~~~~~~~------~~~~~~i~L~~y~~~wl~~~ 682 (688)
T TIGR02455 609 GLLVMVHELPAGKGIQITALNFGADAIAEEICLPGFAPGPVVDIIHESVEGDLT------DDCELMINLDPYEALALRIV 682 (688)
T ss_pred cEEEEEEEcCCCCceEEEeeccCCCCeeeEEeccccCCCCceeccCCCccCCcC------CCceeEEEecCcceEEEEec
Confidence 99999998653 4889999999987766555432 1235677777664332110 11345899999999999753
No 33
>COG0366 AmyA Glycosidases [Carbohydrate transport and metabolism]
Probab=100.00 E-value=7.6e-38 Score=326.70 Aligned_cols=351 Identities=21% Similarity=0.325 Sum_probs=225.8
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
.||+++|. .+|||++.||+.|||+||| ++||++||++||+|||+||+|+|+||++. +|+|+++
T Consensus 49 ~Pi~~s~~------~~~gY~~~Dy~~id~~~Gt--------~~d~~~li~~~H~~gi~vi~D~V~NH~s~---~~~~f~~ 111 (505)
T COG0366 49 SPIFESPQ------ADHGYDVSDYTKVDPHFGT--------EEDFKELVEEAHKRGIKVILDLVFNHTSD---EHPWFKE 111 (505)
T ss_pred CCCCCCCc------cCCCccccchhhcCcccCC--------HHHHHHHHHHHHHCCCEEEEEeccCcCCC---ccHHHHH
Confidence 48888884 4569999999999999999 69999999999999999999999999999 9999987
Q ss_pred ccCCCC----ccceeecC--------CC---------C---------cccccCCcCCCCCCCHHHHHHHHHHHHHHHHhc
Q 011993 81 FRGIDN----KVYYMVDG--------TG---------Q---------LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEY 130 (473)
Q Consensus 81 ~~~~~~----~~~~~~~~--------~~---------~---------~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~ 130 (473)
...... .+||.|.. .. + .+.+...++|||+.||+|++++.+++++|+ ++
T Consensus 112 ~~~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n~~v~~~~~~~~~~W~-~~ 190 (505)
T COG0366 112 ARSSKPNPKRSDYYIWRDPDPDGTPPNNWFSVFGGDAWTWGNTGEYYLHLFSSEQPDLNWENPEVREELLDVVKFWL-DK 190 (505)
T ss_pred HhcCCCCcccCCCceEccCcccCCCCCcchhhcCCCCCCcCCCCceEEEecCCCCCCcCCCCHHHHHHHHHHHHHHH-Hc
Confidence 653332 27787731 10 0 012344579999999999999999999999 69
Q ss_pred CccEEEEecccccccCCC--------CCCCCCHHHHHHHHhcccc--CCceEEecCCCCccccccCCCCCcchhhhhhhH
Q 011993 131 HVDGFRFDLASVLCRGTD--------GSPLNAPPLIRAIAKDAIL--SRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGK 200 (473)
Q Consensus 131 giDGfR~Daa~~l~~~~~--------~~~~~~~~~~~~~~~~~~~--~~~~li~E~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (473)
||||||+|+++++.+... ..+....+.+++....... ..+..+++......... ... ..
T Consensus 191 gvDGfRlDa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~-~~ 259 (505)
T COG0366 191 GVDGFRLDAAKHISKDFGLPPSEENLTFLEEIHEYLREENPDVLIYGEAITDVGEAPGAVKEDF----------ADN-TS 259 (505)
T ss_pred CCCeEEeccHhhhccccCCCCcccccccHHHHHHHHHHHHHHHHhcCcceeeeeccccccchhh----------hhc-cc
Confidence 999999999999988642 2233333344443332111 12222222111110000 000 00
Q ss_pred HHHH-HHHHHcCC----------CCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeeeeccccccccCCCC
Q 011993 201 YRDD-LRKFIKGD----------PGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEG 269 (473)
Q Consensus 201 ~~~~-l~~~~~~~----------~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~ 269 (473)
.... +...+... ......+...+......... .......|..|||..|+.+.......
T Consensus 260 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~hD~~r~~~~~~~~~~-------- 328 (505)
T COG0366 260 FTNPELSMLFDFSHVGLDFEALAPLDAEELKEILADWPLAVNL---NDGWNNLFLSNHDQPRLLSRFGDDVG-------- 328 (505)
T ss_pred hhhhhHhhccccccccccccccCcccHHHHHHHHHHHHhhhcc---ccCchhhhhhhcCccceeeeccCCcc--------
Confidence 0000 00000000 01111221111111111110 11233347999999888655421100
Q ss_pred CCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCC-------------CCCC
Q 011993 270 GNDGCNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNN-------------SYGH 336 (473)
Q Consensus 270 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~-------------~~~~ 336 (473)
.....++++++++++++|+|+||||+|+|+.+..... ...+
T Consensus 329 --------------------------~~~~~~~~~~~~~~~~~g~p~iy~G~e~g~~~~~~~~~~~~~~~~~~~~~~~~~ 382 (505)
T COG0366 329 --------------------------GRDASAKLLAALLFLLPGTPFIYYGDELGLTNFKDPPIKYYDDVELDSIILLSR 382 (505)
T ss_pred --------------------------chHHHHHHHHHHHHhCCCCcEEecccccCCCCCCCcchhhhchhhhhhhhhccc
Confidence 0146688899999999999999999999999865442 2235
Q ss_pred CCCCCCccccc---------------------------cc-cc--chhHHHHHHHHHHHHhcc-cCCCCcCCCCCCccee
Q 011993 337 DTAINNFQWGQ---------------------------LE-TK--KNSHYRFFSEVIKFRQSR-RVFGREDFLNINDVTW 385 (473)
Q Consensus 337 ~~~r~~~~W~~---------------------------~~-~~--~~~l~~~~~~L~~lR~~~-p~l~~g~~~~~~~~~~ 385 (473)
+++|.+|+|+. .. .. ..+++.+|++++++|+.+ ..+..|......
T Consensus 383 ~~~r~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~~~~~~l~~~r~~~~~~~~~g~~~~~~---- 458 (505)
T COG0366 383 DGCRTPMPWDENGLNAGFTGGKPWLSVNPNDLLGINVEAQLADELPESLFNFYRRLIALRKQHSALLANGEDFVLL---- 458 (505)
T ss_pred cCCCCCcCCCCCCCCCCccCCCcCcccChhhhhhhhHHHHhcccCcccHHHHHHHHHHHHHhhhhhhcCcccceec----
Confidence 68899999991 10 12 458999999999999999 445555333321
Q ss_pred eccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCC
Q 011993 386 HEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPP 427 (473)
Q Consensus 386 ~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~ 427 (473)
......+++|.|... ++.++|++|++.....+.+|.
T Consensus 459 -----~~~~~~~~~~~~~~~-~~~~~~~~n~~~~~~~~~~p~ 494 (505)
T COG0366 459 -----ADDDPSLLAFLRESG-GETLLVVNNLSEEEQEVELPG 494 (505)
T ss_pred -----CCCCceEEEEecccC-CceEEEEEcCCCccccccCCc
Confidence 135557999999876 778999999998876666664
No 34
>KOG0471 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.5e-36 Score=312.63 Aligned_cols=407 Identities=18% Similarity=0.223 Sum_probs=255.0
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
.||+++|.+ +|||++.||+.|+|+||| +|||++||+++|++||++|+|+|+||++. +|+||..
T Consensus 60 sP~~~s~~~------~~GY~~~d~~~l~p~fGt--------~edf~~Li~~~h~~gi~ii~D~viNh~~~---~~~wf~~ 122 (545)
T KOG0471|consen 60 SPFTKSSKP------DFGYDASDLEQLRPRFGT--------EEDFKELILAMHKLGIKIIADLVINHRSD---EVEWFKA 122 (545)
T ss_pred CCCcCCCHH------HhccCccchhhhcccccH--------HHHHHHHHHHHhhcceEEEEeeccccCCc---ccccccc
Confidence 388888886 669999999999999999 59999999999999999999999999999 9999975
Q ss_pred ccCCC--CccceeecCCCC------------ccc-------------------ccCCcCCCCCCCHHHHHHHHHHHH-HH
Q 011993 81 FRGID--NKVYYMVDGTGQ------------LLN-------------------YAGCGNTLNCNHPVVMELILDSLR-HW 126 (473)
Q Consensus 81 ~~~~~--~~~~~~~~~~~~------------~~~-------------------~~~~~~dln~~np~V~~~i~~~~~-~w 126 (473)
-...+ ..+||.+.+... .+. +...+||||++||+|++.|.++++ +|
T Consensus 123 ~~~~~~~y~d~~~~~~~~~~~~g~~~~p~nw~~~~~~s~~~~~e~~~~~~l~~~~~~~pDln~~n~~V~~~~~~~l~~~~ 202 (545)
T KOG0471|consen 123 SPTSKTGYEDWYPWHDGSSLDVGKRIPPLNWLSVFGGSAWPFDEGRQKYYLGQFAVLQPDLNYENPDVRKAIKEWLRDFW 202 (545)
T ss_pred CccccccceeeeeccCcccccccCCCCccchHhhhccccCcccccccceeccchhhcCCCCCCCCHHHHHHHHHHHHHHH
Confidence 33222 246777633211 111 112279999999999999999999 88
Q ss_pred HHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCCceEEecCCCCccccccCCCCCcchhhhhhhHHHHHHH
Q 011993 127 VVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLR 206 (473)
Q Consensus 127 ~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 206 (473)
+ ++||||||||+++++...+ .+... ....+.-+||.|.....+.......... ..-........+
T Consensus 203 ~-~~gvdGfRiD~v~~~~~~~----------~~~~~---~~~p~~~~~~~~~~~~~~~~~~~~y~~~-~~~~~~~~~~~~ 267 (545)
T KOG0471|consen 203 L-EKGVDGFRIDAVKGYAGEN----------FKNMW---PDEPVFDVGEKLQDDNYVAYQYNDYGED-QPEIHDLIRAER 267 (545)
T ss_pred h-hcCCCeEEEEccccccccc----------ccccc---cCCCcccceeEecCcchhhccccccccc-chhhhhHHHHHH
Confidence 8 8999999999999997664 11111 1223456677665553332211110000 000011111111
Q ss_pred HHHcCCCCcHHHHHHHhcCCcccccccCCCCCcceeEEEecCCCceeeee------e-------ccccccccCCCCCCCC
Q 011993 207 KFIKGDPGMKGILATRISGSSDLYRVNKRKPYHSINFIIAHDGFTLYDLV------S-------YNYKHNEANGEGGNDG 273 (473)
Q Consensus 207 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~nHD~~~~~~~~------~-------~~~~~~~~~~~~~~~~ 273 (473)
..+.........-...+. ............+|.+||+..++.+.. . .............+..
T Consensus 268 ~~~~~~~~~~~~~~~~~l-----~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~lt~~~~~~~~~~~~~~~~~~~~~~~ 342 (545)
T KOG0471|consen 268 FLLDDYSAAFGFGDKRIL-----QTEAYSSLEQLLRLLENSSKPRGSDLPFNFDTLSDLGLTVASIYKEVEVDWLSNHDT 342 (545)
T ss_pred hhhhhhhhcccccchhhh-----hhhhhccHHHHHhhhccCCCCccccccchhhhhhhhhccchHHHHHHHHHHHhcCCc
Confidence 111111000000000000 000000112456777777754421110 0 0000000000011110
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCC----CCCCCccccccc
Q 011993 274 CNDNFSWNCGFEGETDDASIKALRSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHD----TAINNFQWGQLE 349 (473)
Q Consensus 274 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~----~~r~~~~W~~~~ 349 (473)
+.....+........|..++++....++...+++++||+|++|+|+|+|+....-......+ ..|+||+|+...
T Consensus 343 --~~~~a~W~~~~~~~~r~~sr~~~~~~~~~~~l~~tlpG~~~~y~g~e~g~~~~~~~~~~~~~~~~~~~rt~~~w~~~~ 420 (545)
T KOG0471|consen 343 --ENRWAHWVLGNHDQARLASRFGSDSVDLLNVLLLTLPGTPVTYYGEEIGMDDVAISGEDGEDPKLMQSRTPMQWDEST 420 (545)
T ss_pred --cCCceeeeecCccchhhHHHhcchhHHHHhHHhcccCCCceEEEeEEeeccceeeccCCCcCcHHhccCCcccccccc
Confidence 12223333444556677888888888999999999999999999999999876111111111 228899998872
Q ss_pred ---------------------------ccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEE
Q 011993 350 ---------------------------TKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTL 402 (473)
Q Consensus 350 ---------------------------~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R 402 (473)
..+.+++.+++++..+|+.+..+..|..... ..++.+++|.|
T Consensus 421 ~~gfs~~~~~~~~~~~~~~~~n~~~~~~~~~s~~~~~~~~~~lr~~~~~~~~g~~~~~-----------~~~~~if~~~r 489 (545)
T KOG0471|consen 421 NAGFSEASKTWLPVNADYTVINVKMQSGDPQSTLKLFKRLLDLRKSERSYLHGSFVLF-----------AATPGLFSFSR 489 (545)
T ss_pred ccCCCCccCcceeccccchhheeeccccCCccHHHHHHHHHHHhhhcccccccceeee-----------cCCCceEEEEe
Confidence 4557899999999999999876666665443 57888999999
Q ss_pred ecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEE
Q 011993 403 HDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 403 ~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 471 (473)
...+.+.+++++|+++......+..... ...+.++ . .......+.|+|++++||+
T Consensus 490 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~----------~~~~~~~~~l~p~e~~vl~ 544 (545)
T KOG0471|consen 490 NWDGNERFIAVLNFGDSPLSLNLTDLDS---VSLLSSN-Y----------SDVDLSRLKLEPHEGLVLR 544 (545)
T ss_pred ccCCCceEEEEEecCCcccccccccccc---eeeeecc-c----------cccccceeeecCCceEEEe
Confidence 9887899999999998888777765421 2222222 1 1124568999999999986
No 35
>PLN02784 alpha-amylase
Probab=100.00 E-value=2.6e-34 Score=297.56 Aligned_cols=288 Identities=18% Similarity=0.257 Sum_probs=181.7
Q ss_pred CCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCC--CCCCccccccCCCCccc
Q 011993 12 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD--DANPYTTSFRGIDNKVY 89 (473)
Q Consensus 12 ~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~--~~~~~~~~~~~~~~~~~ 89 (473)
++.++|||++.|||++|++|||+ +||++||++||++||+||+|+|+||++..- .+..|- .|. .+
T Consensus 545 ~s~s~~GY~p~D~y~lds~yGT~--------~ELk~LI~a~H~~GIkVIlDiViNH~ag~f~~~~g~~~-~f~-----g~ 610 (894)
T PLN02784 545 ESVSPEGYMPKDLYNLNSRYGTI--------DELKDLVKSFHEVGIKVLGDAVLNHRCAHFQNQNGVWN-IFG-----GR 610 (894)
T ss_pred CCCCCCCcCcccccccCcCcCCH--------HHHHHHHHHHHHCCCEEEEEECcccccccccCCCCccc-ccC-----Ce
Confidence 44578999999999999999995 999999999999999999999999998521 011111 111 11
Q ss_pred eeecC------------CCCcc--cccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCH
Q 011993 90 YMVDG------------TGQLL--NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAP 155 (473)
Q Consensus 90 ~~~~~------------~~~~~--~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~ 155 (473)
+.|++ .+... ......||||+.||+||++|.+++.+|++++||||||+|+|++++..
T Consensus 611 ~dW~d~~i~~ddp~F~GrG~~~sgddf~~lPDLDh~npeVR~eL~~WlkWL~~e~G~DGfRLDaVKgf~~~--------- 681 (894)
T PLN02784 611 LNWDDRAVVADDPHFQGRGNKSSGDNFHAAPNIDHSQDFVRKDLKEWLCWMRKEVGYDGWRLDFVRGFWGG--------- 681 (894)
T ss_pred ecCCCCcccCCCcccCCcCCcCcccccCcCCcCCCCCHHHHHHHHHHHHHHHhccCCCEEEEeccCCCCHH---------
Confidence 11110 01100 11133799999999999999999999998899999999999987444
Q ss_pred HHHHHHHhccccCCceEEecCCCCccccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHH--------HhcCCc
Q 011993 156 PLIRAIAKDAILSRCKIIAEPWDCRGLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILAT--------RISGSS 227 (473)
Q Consensus 156 ~~~~~~~~~~~~~~~~li~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~l~~~~ 227 (473)
+++++.+. .+| .++|||.|+.... ..+..+ +.+ +..++.+.+++....+..+.|.. .+....
T Consensus 682 -Fvkeyv~a-~kp-~F~VGEyWd~~~~-~~g~~~-----Ynq-d~~rq~l~dwi~~tgg~~saFDfplk~~L~~A~~~~e 751 (894)
T PLN02784 682 -YVKDYMEA-SEP-YFAVGEYWDSLSY-TYGEMD-----YNQ-DAHRQRIVDWINATNGTAGAFDVTTKGILHSALERCE 751 (894)
T ss_pred -HHHHHHhc-cCC-cEEEEEecccccc-ccCccc-----cCc-hhHHHHHHHHHHhCCCceeeechhHHHHHHHHHhccc
Confidence 46666653 334 7999999986421 111111 111 12245566666544332222222 221100
Q ss_pred --cccc-------ccCCCCCcceeEEEecCCCceeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHH
Q 011993 228 --DLYR-------VNKRKPYHSINFIIAHDGFTLYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRS 298 (473)
Q Consensus 228 --~~~~-------~~~~~~~~~~~f~~nHD~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 298 (473)
.+.. .-...|..+|+|++|||+.+.. .+|+.. .
T Consensus 752 ~wrL~d~~g~~~glv~~~P~~AVTFVDNHDTg~~Q------------------------~~w~~p--------------~ 793 (894)
T PLN02784 752 YWRLSDQKGKPPGVVGWWPSRAVTFIENHDTGSTQ------------------------GHWRFP--------------E 793 (894)
T ss_pred hhhhhhccCCCCCeeccccCceEEEecCCCCCCCc------------------------ccCCCC--------------c
Confidence 0000 0112567889999999995420 112110 2
Q ss_pred HHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCC
Q 011993 299 RQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFL 378 (473)
Q Consensus 299 ~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~ 378 (473)
.+..++++++|+.||+||||||+=++. +.+-+++|+.+|+.. -++..+..
T Consensus 794 ~k~~~AYAyILthpG~PcVFy~h~y~~-----------------------------~~~~I~~Li~iRk~~-gI~~~S~v 843 (894)
T PLN02784 794 GKEMQGYAYILTHPGTPAVFYDHIFSH-----------------------------YHPEIASLISLRNRQ-KIHCRSEV 843 (894)
T ss_pred cchhhHHHHHHcCCCcceEEehhhhhh-----------------------------hHHHHHHHHHHHHHc-CCCCCCce
Confidence 235568889999999999999975431 123489999999984 35555444
Q ss_pred CCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEE
Q 011993 379 NINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAF 414 (473)
Q Consensus 379 ~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~ 414 (473)
.+. ....++++-.- +++++|-+
T Consensus 844 ~i~----------~a~~~~Y~a~i----~~k~~~ki 865 (894)
T PLN02784 844 KIT----------KAERDVYAAII----DEKVAMKI 865 (894)
T ss_pred eEE----------EecCCcEEEEe----CCeeEEEE
Confidence 331 35566777666 34555554
No 36
>TIGR02401 trehalose_TreY malto-oligosyltrehalose synthase. This enzyme, formally named (1-4)-alpha-D-glucan 1-alpha-D-glucosylmutase, is the TreY enzyme of the TreYZ pathway of trehalose biosynthesis, an alternative to the OtsAB pathway. Trehalose may be incorporated into more complex compounds but is best known as compatible solute. It is one of the most effective osmoprotectants, and unlike the various betaines does not require nitrogen for its synthesis.
Probab=99.97 E-value=2e-30 Score=271.63 Aligned_cols=129 Identities=11% Similarity=0.183 Sum_probs=95.3
Q ss_pred HHHHHHHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccccc------------------chhHHHH
Q 011993 297 RSRQMKNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETK------------------KNSHYRF 358 (473)
Q Consensus 297 ~~~~~~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~------------------~~~l~~~ 358 (473)
+....+..+++.|++||+|.||||+|+++.+- ..+++|.||+|+..... ....+.+
T Consensus 643 G~~nsLsq~lLklT~PGvPdIYqGtE~wd~sl------vDPDNRRpvd~~~r~~~L~~l~~~~~~~l~~~~~dg~~Kl~~ 716 (825)
T TIGR02401 643 GLQNSLSQTLLKLTAPGVPDIYQGTEFWDLSL------VDPDNRRPVDYAARRAALLQLTTPNWSELELWLLDGLVKLAV 716 (825)
T ss_pred HHHHHHHHHHHHHcCCCCCcccccccccccCC------CCCCccCCCChHHHHHHHHhhhcccchhhhccccccHHHHHH
Confidence 35566778888899999999999999999874 34578999999854321 1456789
Q ss_pred HHHHHHHHhcccC-CCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCC--------------cEEE
Q 011993 359 FSEVIKFRQSRRV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDF--------------FVKV 423 (473)
Q Consensus 359 ~~~L~~lR~~~p~-l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~--------------~~~~ 423 (473)
+++++++|+++|+ |..|+++.+.. . . ...+.|++|.|... ++.++||+|-... ...+
T Consensus 717 i~~lL~lRr~~p~lF~~G~y~pL~~-~-----G-~~~~~vvaFaR~~~-~~~~vvvv~R~~~~l~~~~~~~~~~W~dT~l 788 (825)
T TIGR02401 717 TAAALQLRREHPELFGQGDYQPLEA-G-----G-PGAAHVIAFARGTD-RQAAIVVVTRLSLRLIQTGLPPNGFWRDTAL 788 (825)
T ss_pred HHHHHHHHHhCHHhhhcCCeEEEec-c-----C-CCcCcEEEEEEecC-CcEEEEEEecchhhhhhccCccccccCCceE
Confidence 9999999999997 58888776511 0 0 24578999999875 7889999886432 1245
Q ss_pred ECCCCCCCCCcEEEEeCCCC
Q 011993 424 SLPPPPPKRQWFRVVDTNLE 443 (473)
Q Consensus 424 ~l~~~~~~~~~~~~~~~~~~ 443 (473)
.||. +.|.+++.+...
T Consensus 789 ~LP~----g~w~d~Ltg~~~ 804 (825)
T TIGR02401 789 TLPA----GAWRDILTGETL 804 (825)
T ss_pred ecCC----cceeecccCccc
Confidence 5554 579999887543
No 37
>PRK14511 maltooligosyl trehalose synthase; Provisional
Probab=99.94 E-value=1.7e-24 Score=228.00 Aligned_cols=128 Identities=13% Similarity=0.143 Sum_probs=95.4
Q ss_pred HHHHHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCcccccccc---------------cchhHHHHHHHHHHHH
Q 011993 302 KNFHLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLET---------------KKNSHYRFFSEVIKFR 366 (473)
Q Consensus 302 ~~a~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~---------------~~~~l~~~~~~L~~lR 366 (473)
...+++.|++||+|+||||+|+++.+- ..+.+|.|++|..... +....+.++++++++|
T Consensus 704 Laq~lLqlT~PGVPdIYqG~E~wd~sl------vDPDNRRpvd~~~r~~~L~~l~~~~~~~~~~dg~~kl~~~~~lL~lR 777 (879)
T PRK14511 704 LAQTLLKLTSPGVPDVYQGTELWDFSL------VDPDNRRPVDFAARAAALARLDEGAELLPWDDGRIKLLLIARALRLR 777 (879)
T ss_pred HHHHHHHHCcCCCCcccCcccchhccC------CCCCCCCCCChHHHHHHHhhcccccccccCCcchHHHHHHHHHHHHH
Confidence 344556799999999999999999773 3457899999987431 1223588999999999
Q ss_pred hcccCC-CCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCC---------CcEEEECCCCCCCCCcEE
Q 011993 367 QSRRVF-GREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHD---------FFVKVSLPPPPPKRQWFR 436 (473)
Q Consensus 367 ~~~p~l-~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~---------~~~~~~l~~~~~~~~~~~ 436 (473)
+++|+| ..|++..+.. . . ...+.|+||.|... ++.++||+|-.. ....+.||.....+.|.+
T Consensus 778 r~~p~Lf~~G~y~pL~~---~---G-~~a~~v~AFaR~~~-~~~~vvvv~R~~~~l~~~~~W~dt~v~LP~~~~~~~w~d 849 (879)
T PRK14511 778 RDRPELFAGGEYLPLEV---S---G-PHAGHVLAFARGGG-GGRALTVAPRLPAGLLGAGGWGDTRLVLPEILSGGRWRD 849 (879)
T ss_pred HhCHHHhhCCceEEEEe---c---C-CCCCcEEEEEEecC-CceEEEEeccccccccccCCcCCeEEeCCCccCCCceeE
Confidence 999999 5688877611 0 0 23478999999875 788999997643 356788886434578999
Q ss_pred EEeCCCC
Q 011993 437 VVDTNLE 443 (473)
Q Consensus 437 ~~~~~~~ 443 (473)
++.+...
T Consensus 850 ~lTG~~~ 856 (879)
T PRK14511 850 LLTGEEV 856 (879)
T ss_pred eccCCcc
Confidence 9987543
No 38
>KOG2212 consensus Alpha-amylase [Carbohydrate transport and metabolism]
Probab=99.91 E-value=8.1e-23 Score=188.12 Aligned_cols=345 Identities=19% Similarity=0.278 Sum_probs=211.8
Q ss_pred CCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCC-----------CCCCCccccccCCCC
Q 011993 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEA-----------DDANPYTTSFRGIDN 86 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~-----------~~~~~~~~~~~~~~~ 86 (473)
-|++.+| .++.|-|.+ |||..||++|.+-|+|+++|+|+|||... ....|-..+|++.+.
T Consensus 79 RYQPvSY-KL~tRSGNE--------~eF~dMV~RCN~VGVRiyVDvv~NHM~g~~~~G~~vGt~Gs~~~p~s~SfPGVPY 149 (504)
T KOG2212|consen 79 RYQPVSY-KLCTRSGNE--------DEFRDMVTRCNNVGVRIYVDAVINHMCGNAVSGGTVGTCGSYFNPGSRSFPGVPY 149 (504)
T ss_pred ecccceE-EeeccCCCH--------HHHHHHHHHhhccceEEEehhhhhhhccccccCCccccccCccCCCCCCCCCCCc
Confidence 5999998 899999997 99999999999999999999999999851 112233334444432
Q ss_pred c--cceeec---CCCCcccccC------C----cCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCC
Q 011993 87 K--VYYMVD---GTGQLLNYAG------C----GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSP 151 (473)
Q Consensus 87 ~--~~~~~~---~~~~~~~~~~------~----~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~ 151 (473)
. +|.... +.+...++.. | ..|||..+..||.+|++.+.+.+ ++||-|||+||++||+... .
T Consensus 150 s~~DFn~~kc~~~~~~i~~~Nda~~V~~C~LVGL~DL~Q~s~~Vr~Kive~L~hLi-dlGVAGFRvDAsKHMwp~D---i 225 (504)
T KOG2212|consen 150 SGWDFNDGKCKTGSGDIENYNDATQVRDCRLVGLLDLAQGSDYVRSKIAEYLNHLI-DIGVAGFRVDASKHMWPGD---I 225 (504)
T ss_pred ccccCCCcccCCCccccccccchhhhhcceEeecchhhhcchHHHHHHHHHHHHHH-HhccceeeechhhccChHH---H
Confidence 1 111110 1112222221 1 36899999999999999999999 8999999999999995432 1
Q ss_pred CCCHHHHHHHHhc--cccCCceEEecCCCCc-cccccCCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCcc
Q 011993 152 LNAPPLIRAIAKD--AILSRCKIIAEPWDCR-GLYLVGKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSD 228 (473)
Q Consensus 152 ~~~~~~~~~~~~~--~~~~~~~li~E~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~ 228 (473)
......++.+..+ ..+...+++-|+.+.+ +....+++-...... ++.|-..+-+.+++.... ..|...-.
T Consensus 226 ~~I~~~l~nLnsD~f~s~srpfi~qEVID~GgE~v~~~dY~g~G~~T--eF~f~~~ig~~~r~~~~~-----kyL~nwG~ 298 (504)
T KOG2212|consen 226 KAILDKLHNLNSDWFPSGSKPFIYQEVIDLGGEPIKSSDYFGNGRVT--EFKFGAKLGTVIRKWNKM-----KYLKNWGE 298 (504)
T ss_pred HHHHHHHhhcccccccCCCCceehhhhhhcCCceeecccccCCceee--eeechHHHHHHHhcchhH-----HHHHhcCC
Confidence 1111223333333 3356678888887766 333333322111112 244556666666665432 11221111
Q ss_pred cccccCCCCCcceeEEEecCCCceeee-----eeccccccccCCCCCCCCCCCCCCCCCCCCCCCChHHHHHHHHHHHHH
Q 011993 229 LYRVNKRKPYHSINFIIAHDGFTLYDL-----VSYNYKHNEANGEGGNDGCNDNFSWNCGFEGETDDASIKALRSRQMKN 303 (473)
Q Consensus 229 ~~~~~~~~~~~~~~f~~nHD~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~ 303 (473)
.+ .+.+...+++|++|||+.|-... +.|. ..++++|
T Consensus 299 ~w--Gf~~s~~~L~FvDNHDNQR~~gagga~VltYK-------------------------------------~~~~Ykm 339 (504)
T KOG2212|consen 299 GW--GFMPSDRALVFVDNHDNQRGHGAGGASVLTYK-------------------------------------DARLYKM 339 (504)
T ss_pred cc--CcCCCcceEEEeccCcccccCCCCcceEEEec-------------------------------------chhhhhh
Confidence 11 12233478999999999764221 1110 1677999
Q ss_pred HHHHHHHhc-CceeeecccccccccCCCCCC---------CCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCC
Q 011993 304 FHLALMVSQ-GTPMMLMGDEYGHTRYGNNNS---------YGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFG 373 (473)
Q Consensus 304 a~~~~l~~p-G~P~iy~G~E~g~~~~~~~~~---------~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~ 373 (473)
|.+|||..| |+|-+..---+-.....++.. +..+ ..+.--|-+ +.-..-++.|.++|.. ..
T Consensus 340 A~~FmLA~PyG~~RVMSSFaF~~~D~~PP~~~~~~i~SP~Fn~D-~tC~~GWvC-----EHRWrqI~~Mv~FrnA---V~ 410 (504)
T KOG2212|consen 340 AVGFMLAHPYGFTRVMSSFAFDVNDWVPPPNNNGVIKSPTFNPD-TTCGNGWVC-----EHRWRQIRNMVNFRNA---VD 410 (504)
T ss_pred hhhhheecccCcchhheeeeeecCCCCCCCCCCcceecceeCCC-CcccCceee-----echHHHHHHHHhhhhh---cC
Confidence 999999999 888665543332222222111 0111 111113444 3455678899999986 22
Q ss_pred CcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCC
Q 011993 374 REDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLES 444 (473)
Q Consensus 374 ~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 444 (473)
..++. . |.++..+.++|.| +.+-++++|..+-..+..|....++++|+++++++...
T Consensus 411 ~t~~~-----~-----w~d~g~nqIaF~R----g~kGF~A~Nn~~~d~s~~l~T~LPAGtYCDviSG~~~~ 467 (504)
T KOG2212|consen 411 GTPFT-----N-----WYDNGSNQIAFGR----GNRGFIAFNNDDWDFSLTLQTGLPAGTYCDVISGDKIN 467 (504)
T ss_pred Ccccc-----c-----eeeCCCcEEEEec----CCccEEEEeCcchhHHHHHhcCCCCCceeeeecccccC
Confidence 22221 2 2366789999999 66778888888776666666666679999999886654
No 39
>smart00642 Aamy Alpha-amylase domain.
Probab=99.58 E-value=2.3e-15 Score=131.97 Aligned_cols=59 Identities=34% Similarity=0.486 Sum_probs=52.5
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+|+++++.. ..++|||+++||++|+|+|||. +||++||++||++||+||+|+|+||++.
T Consensus 39 ~Pi~~~~~~---~~~~~gY~~~d~~~i~~~~Gt~--------~d~~~lv~~~h~~Gi~vilD~V~NH~~~ 97 (166)
T smart00642 39 SPIFESPQG---YPSYHGYDISDYKQIDPRFGTM--------EDFKELVDAAHARGIKVILDVVINHTSD 97 (166)
T ss_pred CcceeCCCC---CCCCCCcCccccCCCCcccCCH--------HHHHHHHHHHHHCCCEEEEEECCCCCCC
Confidence 466666653 4578999999999999999995 9999999999999999999999999994
No 40
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=99.56 E-value=2.8e-14 Score=160.22 Aligned_cols=67 Identities=22% Similarity=0.337 Sum_probs=57.8
Q ss_pred CCccccCCCCCCCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 1 MEFQRRRNPRDHMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 1 ~~~~~~~~~~~~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
+|++.++. .++|||+++||++|||.||+. ++|++||++||++||+||||+|+|||+.++.+|+|+++
T Consensus 778 sPi~~a~~-----gs~hGYdv~D~~~idp~lG~~--------edf~~Lv~~ah~~Gi~vilDiV~NH~~~~~~~n~w~~d 844 (1693)
T PRK14507 778 SPILKARP-----GSTHGYDIVDHSQINPEIGGE--------EGFERFCAALKAHGLGQLLDIVPNHMGVGGADNPWWLD 844 (1693)
T ss_pred CCCcCCCC-----CCCCCCCCCCCCccCcccCCH--------HHHHHHHHHHHHCCCEEEEEecccccCCCccCCHHHHH
Confidence 46666432 357999999999999999995 99999999999999999999999999965447888865
No 41
>PF14872 GHL5: Hypothetical glycoside hydrolase 5
Probab=99.46 E-value=1.2e-11 Score=123.68 Aligned_cols=106 Identities=24% Similarity=0.389 Sum_probs=75.4
Q ss_pred CCCcCCCCCcc--cCCCCCCCCCCCCCC-chHHHHHHHHHHHHH---CCCEEEEEEecccccCCCCCCCccccccCCCCc
Q 011993 14 VNTWGYSTINF--FSPMSRYAAGGGGPL-KASWEFKEMVKALHG---AGIEVILDVVYNHTNEADDANPYTTSFRGIDNK 87 (473)
Q Consensus 14 ~~~~GY~~~d~--~~vdp~~Gt~~~~~~-~~~edl~~lv~~aH~---~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~ 87 (473)
.-||||+|.=+ -+++|. ..+ .+-++|-.||+++|. ..|+||+|+|+.|.-..+ -..+ .
T Consensus 282 tqNWGYDv~I~GsaAtNPa------lL~TlRPDElVdfiatLHnFp~gPIqvIyDlVyGHADNQ~--~~LL--------n 345 (811)
T PF14872_consen 282 TQNWGYDVVILGSAATNPA------LLETLRPDELVDFIATLHNFPTGPIQVIYDLVYGHADNQA--LDLL--------N 345 (811)
T ss_pred ccccCcceeeeccCCCCHH------HHhcCCcHHHHHHHHHHhcCCCCCeEEEEeeecccccchh--hHhh--------h
Confidence 35899998533 233433 222 455999999999997 779999999999966511 0111 1
Q ss_pred cceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 88 VYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
.-|...| ..-+-|||+.+|.||..+++.-+.=+ ++|+||+|+|.+.-.
T Consensus 346 ~~flkGP-------nMYGQdlnhq~P~VRAILLEmQRRK~-n~GaDGIRVDGgQDF 393 (811)
T PF14872_consen 346 RRFLKGP-------NMYGQDLNHQNPVVRAILLEMQRRKI-NTGADGIRVDGGQDF 393 (811)
T ss_pred hhhccCC-------ccccccccccChHHHHHHHHHHHhhc-ccCCceeEecccccc
Confidence 1122211 11256899999999999999999999 899999999976543
No 42
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=99.41 E-value=2.2e-12 Score=130.99 Aligned_cols=61 Identities=23% Similarity=0.332 Sum_probs=55.8
Q ss_pred CCCCCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc
Q 011993 12 HMVNTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS 80 (473)
Q Consensus 12 ~~~~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~ 80 (473)
.-+|.|||+|+|+..|+|.+|+. +.|.+||.++|.+||.+|+|+|+|||+..++++||..+
T Consensus 45 ~pGStHGYDVvD~t~InPeLGG~--------egl~rLvaalk~~GlGlI~DIVPNHMav~g~~N~ww~D 105 (889)
T COG3280 45 RPGSTHGYDVVDPTEINPELGGE--------EGLERLVAALKSRGLGLIVDIVPNHMAVGGHENPWWWD 105 (889)
T ss_pred CCCCCCCccCCCccccChhhcCh--------HHHHHHHHHHHhcCCceEEEecccchhcccccChHHHH
Confidence 34678999999999999999995 99999999999999999999999999998778888753
No 43
>TIGR01531 glyc_debranch glycogen debranching enzymye. glycogen debranching enzyme possesses two different catalytic activities; oligo-1,4--1,4-glucantransferase (EC 2.4.1.25) and amylo-1,6-glucosidase (EC 3.2.1.33). Site directed mutagenesis studies in S. cerevisiae indicate that the transferase and glucosidase activities are independent and located in different regions of the polypeptide chain. Proteins in this model belong to the larger alpha-amylase family. The model covers eukaryotic proteins with a seed composed of human, nematode and yeast sequences. Yeast seed sequence is well characterized. The model is quite rigorous; either query sequence yields large bit score or it fails to hit the model altogether. There doesn't appear to be any middle ground.
Probab=99.32 E-value=1.5e-10 Score=126.95 Aligned_cols=60 Identities=20% Similarity=0.356 Sum_probs=50.9
Q ss_pred CCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHC-CCEEEEEEecccccCCCCCCCccccc
Q 011993 15 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGA-GIEVILDVVYNHTNEADDANPYTTSF 81 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~-Gi~VilD~V~NH~~~~~~~~~~~~~~ 81 (473)
+++.|++.||+.|||.||.+ +...+||++||++||++ ||+||+|+|+|||+. +|+|++++
T Consensus 160 SnS~Ysi~Dyl~idP~~~~~----~~~~~d~~~lV~~~h~~~Gm~~ilDvV~NHTa~---ds~Wl~eH 220 (1464)
T TIGR01531 160 SNSCYSLYDQLQLNQHFKSQ----KDGKNDVQALVEKLHRDWNVLSITDIVFNHTAN---NSPWLLEH 220 (1464)
T ss_pred CCCCccccchhhcChhhccc----CCcHHHHHHHHHHHHHhcCCEEEEEeeeccccc---CCHHHHhC
Confidence 67899999999999999620 00159999999999997 999999999999999 88887643
No 44
>PF11941 DUF3459: Domain of unknown function (DUF3459); InterPro: IPR022567 This functionally uncharacterised domain is found in bacteria. It is about 110 amino acids in length and is found C-terminal to PF00128 from PFAM, PF02922 from PFAM. ; GO: 0033942 4-alpha-D-{(1->4)-alpha-D-glucano}trehalose trehalohydrolase activity; PDB: 2WC7_A 2WCS_A 2WKG_A 3M07_A 2PWD_A 1ZJB_A 2PWF_C 2PWE_A 2PWG_A 2PWH_A ....
Probab=99.16 E-value=9.4e-11 Score=92.04 Aligned_cols=89 Identities=24% Similarity=0.362 Sum_probs=64.2
Q ss_pred HHHHHHHHHhcccCCCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEE
Q 011993 358 FFSEVIKFRQSRRVFGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRV 437 (473)
Q Consensus 358 ~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~ 437 (473)
|||+||+||+++|+|..|....+. +. ...++.++++.|..+ ++.++|++|||++++++. . ...+..+
T Consensus 1 ~yr~Li~LRr~~PaL~~~~~~~~~-~~------~~~~~~l~~~~r~~~-~~~l~v~~Nls~~~~~~~--~---~~~~~~l 67 (89)
T PF11941_consen 1 FYRRLIALRRQHPALRDGDFRFLE-VE------RDAPDALLAFRRTGG-GERLLVAFNLSDEPVTVP--E---GPWGEVL 67 (89)
T ss_dssp HHHHHHHHHHHHTHHCCSEEEEEE-EE------EEEETTEEEEEEEET-TEEEEEEEE-SSS-EEEE--T---SCCEEEE
T ss_pred CHHHHHHHHhhCccccCCCcccEE-EE------ecCCCEEEEEEEEcC-CceEEEEEecCCCcEEcc--C---CCCCeEE
Confidence 799999999999999999876541 10 035667888888755 889999999999999998 1 2445666
Q ss_pred EeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEE
Q 011993 438 VDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 470 (473)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 470 (473)
+.+..... +..++|+|+++.|+
T Consensus 68 ~~s~~~~~-----------~~~~~L~p~~~~v~ 89 (89)
T PF11941_consen 68 FSSEPARA-----------GGAGTLPPWSVVVL 89 (89)
T ss_dssp EECSCSSE-------------EEEE-TTEEEEE
T ss_pred EcCCCccc-----------ccCceECCCEEEEC
Confidence 66644431 22999999999986
No 45
>PF02806 Alpha-amylase_C: Alpha amylase, C-terminal all-beta domain; InterPro: IPR006048 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This entry represents the all-beta domain that is found in several alpha-amylases, usually at the C terminus, and which forms a Greek key beta-barrel fold in these enzymes []. More information about this protein can be found at Protein of the Month: alpha-Amylase [].; GO: 0003824 catalytic activity, 0043169 cation binding, 0005975 carbohydrate metabolic process; PDB: 1TCM_A 1CXL_A 1PJ9_A 1OT2_A 2DIJ_A 1CGV_A 1CXK_A 1PEZ_A 1CGX_A 2CXG_A ....
Probab=98.57 E-value=5.2e-08 Score=77.37 Aligned_cols=81 Identities=19% Similarity=0.311 Sum_probs=55.8
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCC--cEEEECCCCCCCCCcEEEEeCCCCCCCCCCC---CCC---CCCCCeEEEc
Q 011993 392 NYDSKFLAFTLHDNNGADIYLAFNAHDF--FVKVSLPPPPPKRQWFRVVDTNLESPDDIVP---EGA---AGTGSTYNLS 463 (473)
Q Consensus 392 ~~~~~v~a~~R~~~~~~~~lvv~N~~~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~---~~~~~~i~l~ 463 (473)
+.+++|+||.|+.++++.++||+||+++ ...+.++.+. +++|+++++++.....+... ... .....+|+||
T Consensus 6 d~~~~v~af~R~~~~~~~~lvv~Nf~~~~~~~~~~~~~p~-~g~y~~vlnsd~~~~~g~~~~~~~~v~~~~~g~~~~~lp 84 (95)
T PF02806_consen 6 DNENNVIAFERKDKGDDRVLVVFNFSPEAVYEDYRIGVPE-AGRYKEVLNSDDEEYGGSGKGNSGEVTVDSNGRITVTLP 84 (95)
T ss_dssp EESSSEEEEEETTTETTEEEEEEESSSS-EEEEEEECSSS-SEEEEETTTTTCEEEEESSCSETSEEEEETTSEEEEEES
T ss_pred cCCCCEEEEEEcCCCCCEEEEEEECCCcccceeEEeCCCC-cceeeEEeCCCccEECCcccccCceEEEeeCCEEEEEEC
Confidence 5778999999986432389999999987 4445554443 68999999987655432110 000 1123489999
Q ss_pred CCeEEEEEeC
Q 011993 464 PYSSILLEAK 473 (473)
Q Consensus 464 p~~~~vl~~~ 473 (473)
|++++||+.|
T Consensus 85 ~~s~~vl~~~ 94 (95)
T PF02806_consen 85 PYSALVLKLK 94 (95)
T ss_dssp TTEEEEEEEE
T ss_pred CCEEEEEEEc
Confidence 9999999864
No 46
>PF14871 GHL6: Hypothetical glycosyl hydrolase 6
Probab=98.38 E-value=2.3e-06 Score=71.68 Aligned_cols=102 Identities=22% Similarity=0.287 Sum_probs=72.0
Q ss_pred cCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCC
Q 011993 17 WGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTG 96 (473)
Q Consensus 17 ~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (473)
+=|.++.--..+|.++. +-|+++|++||++||+|+.=+-++ . +.... ..+|+|+..+++|
T Consensus 27 ~ayYPt~~~~~hp~L~~---------Dllge~v~a~h~~Girv~ay~~~~--~----d~~~~-----~~HPeW~~~~~~G 86 (132)
T PF14871_consen 27 YAYYPTKVGPRHPGLKR---------DLLGEQVEACHERGIRVPAYFDFS--W----DEDAA-----ERHPEWFVRDADG 86 (132)
T ss_pred EEEccCCCCcCCCCCCc---------CHHHHHHHHHHHCCCEEEEEEeee--c----ChHHH-----HhCCceeeECCCC
Confidence 44667776777888884 999999999999999999877665 1 22222 2338999998887
Q ss_pred Ccc---cccCC-cCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 011993 97 QLL---NYAGC-GNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 97 ~~~---~~~~~-~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Da 139 (473)
... .+..+ ...+-+..|. ++++++.++--++.|.+|||-+|.
T Consensus 87 ~~~~~~~~~~~~~~~~c~ns~Y-~e~~~~~i~Ei~~~y~~DGiF~D~ 132 (132)
T PF14871_consen 87 RPMRGERFGYPGWYTCCLNSPY-REFLLEQIREILDRYDVDGIFFDI 132 (132)
T ss_pred CCcCCCCcCCCCceecCCCccH-HHHHHHHHHHHHHcCCCCEEEecC
Confidence 632 11110 1123333454 499999999999889999999883
No 47
>PF11852 DUF3372: Domain of unknown function (DUF3372); InterPro: IPR024561 This entry represents the uncharacterised C-terminal domain of secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyse alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. ; PDB: 2Y4S_A 2FH8_A 2FH6_A 2Y5E_A 2FHC_A 2FHB_A 2FHF_A 2FGZ_A.
Probab=98.36 E-value=5.6e-07 Score=77.40 Aligned_cols=115 Identities=17% Similarity=0.275 Sum_probs=72.2
Q ss_pred hhHHHHHHHHHHHHhcccCCCCcCCCCCC-cceeeccccCCCCCcEEEEEEecCC---------CCeEEEEEeCCCCcEE
Q 011993 353 NSHYRFFSEVIKFRQSRRVFGREDFLNIN-DVTWHEDNWDNYDSKFLAFTLHDNN---------GADIYLAFNAHDFFVK 422 (473)
Q Consensus 353 ~~l~~~~~~L~~lR~~~p~l~~g~~~~~~-~~~~~~~~~~~~~~~v~a~~R~~~~---------~~~~lvv~N~~~~~~~ 422 (473)
....++|+.|++||+++|.|+.++...+. .+.|+.+.. ...+.|+++...... -+.++||+|.++++++
T Consensus 41 ~~a~~~f~elL~iR~SspLFrL~ta~~I~~rv~F~n~G~-~q~pGvIvM~idDg~~~~~dlD~~~~~iVVvfNat~~~~t 119 (168)
T PF11852_consen 41 AAASAYFQELLRIRKSSPLFRLGTAEEIQQRVTFHNTGP-DQTPGVIVMSIDDGAGVGADLDPNYDGIVVVFNATPEEQT 119 (168)
T ss_dssp HHHHHHHHHHHHHHCT-GGGG--SHHHHHHHEEEES-ST-T--TTEEEEEEE-SCSSSS-S-SSEEEEEEEEE-SSS-EE
T ss_pred HHHHHHHHHHHHHhccCccccCCCHHHHHHhccccCCCC-CCCCcEEEEEecCCCccccccCCccCeEEEEEeCCCCeEE
Confidence 45689999999999999999999977664 578886654 567899999997721 2569999999999999
Q ss_pred EECCCCCCCCCcEEEEeCCCCCCCCCCCCCCC-CCCCeEEEcCCeEEEEEe
Q 011993 423 VSLPPPPPKRQWFRVVDTNLESPDDIVPEGAA-GTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 423 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~p~~~~vl~~ 472 (473)
+.++... + |.. -................ ....+++|||+++.||..
T Consensus 120 ~~~~~~~--g-~~L-hpvq~~~~D~~v~~a~~~~~~G~~tVPa~T~aVFv~ 166 (168)
T PF11852_consen 120 FTVPGLA--G-FQL-HPVQAESSDPVVKQASFDAANGTFTVPARTVAVFVQ 166 (168)
T ss_dssp EETGGGS--S--EE--HHHHTGSGTTGGGTEEETTTTEEEE-TTEEEEEEE
T ss_pred EEcCCcC--c-eEe-chHHhcccchhhhceeEecCCCeEEECCceEEEEEe
Confidence 9998643 3 442 22111111111111111 235799999999999974
No 48
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=98.10 E-value=2.5e-05 Score=79.93 Aligned_cols=280 Identities=18% Similarity=0.171 Sum_probs=137.4
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHH---------hcCccEEEEecccccccCCCCCCCCCHHHHHHHHh----ccccCCceE
Q 011993 106 NTLNCNHPVVMELILDSLRHWVV---------EYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK----DAILSRCKI 172 (473)
Q Consensus 106 ~dln~~np~V~~~i~~~~~~w~~---------~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l 172 (473)
.|++-.||.|+.+-+.|+-|.+. +..+||||+||+.++..|. ...+...+++... +...-..+.
T Consensus 144 NDVDNSNPvVQAEqLNwl~yLmN~GsI~~~d~daNFDgiRVDAvDNVdADl---Lqia~dyfkaaYgv~~~~a~An~HlS 220 (809)
T PF02324_consen 144 NDVDNSNPVVQAEQLNWLHYLMNFGSITANDPDANFDGIRVDAVDNVDADL---LQIAGDYFKAAYGVDKNDANANKHLS 220 (809)
T ss_dssp EEE-TTSHHHHHHHHHHHHHHHTHHHHHHS-TTSS--EEEETTGGGS-THH---HHHHHHHHHHHH-TTTBHHHHCTC--
T ss_pred ccccCCCchhhHHHHHHHHHHhhccccccCCCCCCcccEEeecccccCHHH---HHHHHHHHHHHhCCCcChhhHhhhhe
Confidence 57888999999999999999994 5679999999999996663 1111223333322 122345667
Q ss_pred EecCCCCc-ccccc-CCCCCcchhhhhhhHHHHHHHHHHcCCCCcHHHHHHHhcCCccccccc--CCCCCcceeEEEecC
Q 011993 173 IAEPWDCR-GLYLV-GKFPNWDRWAEWNGKYRDDLRKFIKGDPGMKGILATRISGSSDLYRVN--KRKPYHSINFIIAHD 248 (473)
Q Consensus 173 i~E~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~~f~~nHD 248 (473)
|-|.|..+ +.|.. .+-++ -.|+...+..+...+......++.+...+..+..-.... .......-.|+.+||
T Consensus 221 ilE~ws~nd~~y~~~~g~~q----L~mD~~~~~~l~~sL~~~~~~R~~l~~li~~slvnR~~d~~en~a~pNYsFvrAHD 296 (809)
T PF02324_consen 221 ILEAWSSNDPDYVKDTGNPQ----LTMDNGLRLALLYSLTRPSNNRSGLEPLITNSLVNRSNDSTENEAQPNYSFVRAHD 296 (809)
T ss_dssp EESSSTTTHHHHHHHTTSSS----BEEEHHHHHHHHHHTSS-TTC---CTHHHHSSSSECSEE--SSESS-EEEES-BSS
T ss_pred eeeccccCChHHHhcCCCce----eeecHHHHHHHHHHhcCCccccccHHHHhhhhhcccccCCcCCcccCceeeeeccc
Confidence 88999877 33332 11121 234455556666655544333333333333322111111 112234568999999
Q ss_pred CCc---eeeeeeccccccccCCCCCCCCCCCCCCCCCCCCCC--CChHHHHHHH--------------HHHHHHHHHHHH
Q 011993 249 GFT---LYDLVSYNYKHNEANGEGGNDGCNDNFSWNCGFEGE--TDDASIKALR--------------SRQMKNFHLALM 309 (473)
Q Consensus 249 ~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~--~~~~~~~~~~--------------~~~~~~a~~~~l 309 (473)
... +...+....... ..|. ..+.+...+. .-.+.++.++||
T Consensus 297 sevQ~vI~~II~~~i~~~--------------------~dg~t~t~d~l~qAf~iYnaD~~~~~K~Yt~yNiPsaYAllL 356 (809)
T PF02324_consen 297 SEVQTVIAQIIKDKINPN--------------------SDGLTFTLDQLKQAFEIYNADQKKTDKKYTQYNIPSAYALLL 356 (809)
T ss_dssp TTTHHHHHHHHHHHT-TT--------------------TCTTC--HHHHHHHHHHHHHHHTSSS-SSS-S-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCCc--------------------ccCccCCHHHHHHHHHHHHHHHHHhhhhhhccccHHHHHHHH
Confidence 741 122221111000 0010 1111111111 112445677777
Q ss_pred Hh-cCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCCCcCCCCCCcceeecc
Q 011993 310 VS-QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFGREDFLNINDVTWHED 388 (473)
Q Consensus 310 ~~-pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~~g~~~~~~~~~~~~~ 388 (473)
+- .-+|-+||||-+-..+.= |. .+...++.+-.|++-|.++-+=.+. +.+.+..
T Consensus 357 tNKDTVPRVYYGDLYtDdGQY-------------Ma------~KSpYyDaI~tLLKaRikYvaGGQt-----M~~~~~~- 411 (809)
T PF02324_consen 357 TNKDTVPRVYYGDLYTDDGQY-------------MA------TKSPYYDAITTLLKARIKYVAGGQT-----MAVTYLN- 411 (809)
T ss_dssp H-SSSEEEEEHHHHBESSSST-------------TT------SB-TTHHHHHHHHHHHHHH--S-EE-----EEE--EE-
T ss_pred hCCCCCceEEecccccccchh-------------hh------hcCchHHHHHHHHHHHHHhhcCCce-----eeeeccc-
Confidence 74 599999999987665410 11 2357899999999999997432221 1111110
Q ss_pred ccCCCCCcEEEEEEecCC-------------CCeEEEE-EeCC------CCcEEEECCCCCCCCCcEEEEeC
Q 011993 389 NWDNYDSKFLAFTLHDNN-------------GADIYLA-FNAH------DFFVKVSLPPPPPKRQWFRVVDT 440 (473)
Q Consensus 389 ~~~~~~~~v~a~~R~~~~-------------~~~~lvv-~N~~------~~~~~~~l~~~~~~~~~~~~~~~ 440 (473)
..+..|+.=.|..++ -+.+.|| -|.. ++.+.+..-....+..++.++.+
T Consensus 412 ---~~~~~vLtSVRyGkgam~a~d~G~~~tRt~Gi~vii~Nnp~l~l~~~d~v~lnMGaAHkNQ~YR~lllt 480 (809)
T PF02324_consen 412 ---GDNSGVLTSVRYGKGAMTATDTGTAETRTSGIGVIISNNPNLKLNSNDTVVLNMGAAHKNQAYRPLLLT 480 (809)
T ss_dssp ---ETTTSEEEEEE-BTTBSSTT----CCCCT--EEEEEES-TT-B--TT-EEEEE--GGGTT-EEEEEEEE
T ss_pred ---CCCCceEEEEecCCCcCcccccCCccceeceeEEEEcCCcccccCCCCeEEEecchhhccccchhhhhc
Confidence 245579999998774 1334444 4432 24555655555556778877764
No 49
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=97.93 E-value=1.4e-05 Score=79.13 Aligned_cols=59 Identities=25% Similarity=0.319 Sum_probs=53.2
Q ss_pred CCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHH-HCCCEEEEEEecccccCCCCCCCccccc
Q 011993 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALH-GAGIEVILDVVYNHTNEADDANPYTTSF 81 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH-~~Gi~VilD~V~NH~~~~~~~~~~~~~~ 81 (473)
-|++.|...+||.|..+ +.....++++++|.+++ +.||.+|.|+|+|||+. +++|+.++
T Consensus 53 ~YSI~Dql~~~~~~~~~--~~~~~~~~v~~~v~~~~~~~~ll~~~DvV~NHtA~---nS~Wl~eH 112 (423)
T PF14701_consen 53 PYSIYDQLKFDPDFFPP--GKESTFEDVKEFVKEAEKKYGLLSMTDVVLNHTAN---NSPWLREH 112 (423)
T ss_pred CccccchhhcChhhcCC--CccccHHHHHHHHHHHHHHcCceEEEEEeeccCcC---CChHHHhC
Confidence 79999999999999986 44467899999999995 89999999999999999 99999766
No 50
>PF10438 Cyc-maltodext_C: Cyclo-malto-dextrinase C-terminal domain; InterPro: IPR019492 This domain is at the very C terminus of cyclo-malto-dextrinase proteins and consists of 8 beta strands, is largely globular and appears to help stabilise the active sites created by upstream domains, IPR015171 from INTERPRO, and IPR006047 from INTERPRO. Cyclo-malto-dextrinases hydrolyse cyclodextrans to maltose and glucose and catalyse trans-glycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. ; PDB: 3EDK_B 3EDD_A 3EDJ_B 3EDE_A 1H3G_B 3EDF_B.
Probab=97.93 E-value=5.7e-06 Score=62.03 Aligned_cols=71 Identities=17% Similarity=0.232 Sum_probs=46.3
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEE
Q 011993 393 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 393 ~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 471 (473)
..+.|++|.|.++ ++.++||+|.+++++++++.- +.+++.+... ..+..+.........|+|+|++++||+
T Consensus 7 P~~gvYvYfR~~~-~~tVmVilN~n~~~~~ldl~r------y~E~l~~~~~-~~diltg~~i~l~~~l~l~~~~~~ILe 77 (78)
T PF10438_consen 7 PQDGVYVYFRYYD-GKTVMVILNKNDKEQTLDLKR------YAEVLGGFTS-AKDILTGKTIDLSKNLTLPPKSVLILE 77 (78)
T ss_dssp -BTTEEEEEEEES-SEEEEEEEE-SSS-EEEEGGG------GHHHHTT--E-EEETTT--EEE-SSEEEE-TTEEEEEE
T ss_pred ccCCEEEEEEEcC-CCEEEEEEcCCCCCeEEcHHH------HHHhhCCCcc-eEECCCCCEEecCCcEEECCCceEEEE
Confidence 5678999999887 999999999999999999853 3333332111 122333333445679999999999986
No 51
>PF02638 DUF187: Glycosyl hydrolase like GH101; InterPro: IPR003790 This entry describes proteins of unknown function.
Probab=97.92 E-value=3.7e-05 Score=74.69 Aligned_cols=94 Identities=23% Similarity=0.292 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccc---cCCcCCCCCCCHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNY---AGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~dln~~np~V~~~ 118 (473)
.+=|+.+|++||+|||+|..=+.++..+.. .....+ .++.|+.....++.... .+...=||-.+|+||++
T Consensus 69 ~DpL~~~I~eaHkrGlevHAW~~~~~~~~~--~~~~~~-----~~p~~~~~~~~~~~~~~~~~~~~~~~lnP~~PeVr~~ 141 (311)
T PF02638_consen 69 FDPLEFMIEEAHKRGLEVHAWFRVGFNAPD--VSHILK-----KHPEWFAVNHPGWVRTYEDANGGYYWLNPGHPEVRDY 141 (311)
T ss_pred ccHHHHHHHHHHHcCCEEEEEEEeecCCCc--hhhhhh-----cCchhheecCCCceeecccCCCCceEECCCCHHHHHH
Confidence 377999999999999999876644433220 111111 12344333222222111 11123478889999999
Q ss_pred HHHHHHHHHHhcCccEEEEecccc
Q 011993 119 ILDSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 119 i~~~~~~w~~~~giDGfR~Daa~~ 142 (473)
|+++++--+++|.|||+-+|-.-.
T Consensus 142 i~~~v~Eiv~~YdvDGIhlDdy~y 165 (311)
T PF02638_consen 142 IIDIVKEIVKNYDVDGIHLDDYFY 165 (311)
T ss_pred HHHHHHHHHhcCCCCeEEeccccc
Confidence 999999999999999999994433
No 52
>cd06593 GH31_xylosidase_YicI YicI alpha-xylosidase is a glycosyl hydrolase family 31 (GH31) enzyme that catalyzes the release of an alpha-xylosyl residue from the non-reducing end of alpha-xyloside substrates such as alpha-xylosyl fluoride and isoprimeverose. YicI forms a homohexamer (a trimer of dimers). All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The YicI family corresponds to subgroup 4 in the Ernst et al classification of GH31 enzymes.
Probab=97.80 E-value=6.7e-05 Score=73.15 Aligned_cols=95 Identities=17% Similarity=0.246 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc---ccCCcCCCCCCCHHHHHHHH
Q 011993 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 44 dl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~np~V~~~i~ 120 (473)
+.++||+++|++|++|++-+.+ +++. +++.+++. ....|++.+.++.... +.+...-+|+.||++++.+.
T Consensus 67 d~~~~i~~l~~~G~~~~~~~~P-~i~~---~~~~~~e~---~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w~~ 139 (308)
T cd06593 67 DPEGMLSRLKEKGFKVCLWINP-YIAQ---KSPLFKEA---AEKGYLVKKPDGSVWQWDLWQPGMGIIDFTNPDACKWYK 139 (308)
T ss_pred CHHHHHHHHHHCCCeEEEEecC-CCCC---CchhHHHH---HHCCeEEECCCCCeeeecccCCCcccccCCCHHHHHHHH
Confidence 4689999999999999999986 5665 55544332 2246677655544321 22223458999999999999
Q ss_pred HHHHHHHHhcCccEEEEecccccccC
Q 011993 121 DSLRHWVVEYHVDGFRFDLASVLCRG 146 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~~l~~~ 146 (473)
+.++.++ +.|||||-+|....++.+
T Consensus 140 ~~~~~~~-~~Gid~~~~D~~e~~p~~ 164 (308)
T cd06593 140 DKLKPLL-DMGVDCFKTDFGERIPTD 164 (308)
T ss_pred HHHHHHH-HhCCcEEecCCCCCCCcc
Confidence 9999988 799999999987766544
No 53
>cd06592 GH31_glucosidase_KIAA1161 KIAA1161 is an uncharacterized Homo sapiens protein with a glycosyl hydrolase family 31 (GH31) domain that is homologous to the Escherichia coli YihQ glucosidase. Orthologs of KIA1161 are found in eukaryotes and prokaryotes. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.69 E-value=0.00012 Score=71.08 Aligned_cols=93 Identities=24% Similarity=0.374 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc----cccCCcCCCCCCCHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~np~V~~~ 118 (473)
-+.++||+++|++|+|+++=+-+ +++. +++.+++ .....|++.+++|... .+.+...-+|+.||++++.
T Consensus 70 Pdp~~mi~~l~~~G~k~~l~i~P-~i~~---~s~~~~e---~~~~g~~vk~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w 142 (303)
T cd06592 70 PDPKGMIDQLHDLGFRVTLWVHP-FINT---DSENFRE---AVEKGYLVSEPSGDIPALTRWWNGTAAVLDFTNPEAVDW 142 (303)
T ss_pred CCHHHHHHHHHHCCCeEEEEECC-eeCC---CCHHHHh---hhhCCeEEECCCCCCCcccceecCCcceEeCCCHHHHHH
Confidence 45799999999999999999888 5555 4544433 2235677776555211 1223345689999999999
Q ss_pred HHHHHHHHHHhcCccEEEEecccc
Q 011993 119 ILDSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 119 i~~~~~~w~~~~giDGfR~Daa~~ 142 (473)
+.+.++..+.+.|||||-+|....
T Consensus 143 ~~~~~~~~~~~~Gvdg~w~D~~E~ 166 (303)
T cd06592 143 FLSRLKSLQEKYGIDSFKFDAGEA 166 (303)
T ss_pred HHHHHHHHHHHhCCcEEEeCCCCc
Confidence 999999999889999999997654
No 54
>cd06597 GH31_transferase_CtsY CtsY (cyclic tetrasaccharide-synthesizing enzyme Y) is a bacterial 3-alpha-isomaltosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsZ. CtsY and CtsZ both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.68 E-value=0.00013 Score=72.00 Aligned_cols=98 Identities=20% Similarity=0.241 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccc---cccCCCCccceeecCCCCcc----cccCCcCCCCCCCHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT---SFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVV 115 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~np~V 115 (473)
.+.++||+++|++|++|++=+.+ ++... .++..+ .+.......|++.+.+|... .+.+...-+|+.||++
T Consensus 85 Pdp~~mi~~Lh~~G~kv~l~v~P-~i~~~--~~~~~~~~~~~~~~~~~g~~vk~~~G~~~~~~~~W~g~~~~~Dftnp~a 161 (340)
T cd06597 85 PNPKGMIDELHEQGVKVLLWQIP-IIKLR--PHPHGQADNDEDYAVAQNYLVQRGVGKPYRIPGQWFPDSLMLDFTNPEA 161 (340)
T ss_pred CCHHHHHHHHHHCCCEEEEEecC-ccccc--cccccccchhHHHHHHCCEEEEcCCCCccccccccCCCceeecCCCHHH
Confidence 46799999999999999985544 22210 111110 11111224677776665431 1223345689999999
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 116 MELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 116 ~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
++...+.++.+++++|||||-+|+...+
T Consensus 162 ~~Ww~~~~~~~~~~~Gidg~w~D~~E~~ 189 (340)
T cd06597 162 AQWWMEKRRYLVDELGIDGFKTDGGEHV 189 (340)
T ss_pred HHHHHHHHHHHHHhcCCcEEEecCCCcc
Confidence 9999999999997899999999977643
No 55
>KOG3625 consensus Alpha amylase [Carbohydrate transport and metabolism]
Probab=97.58 E-value=0.0029 Score=66.98 Aligned_cols=62 Identities=19% Similarity=0.220 Sum_probs=50.0
Q ss_pred CCcCCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHH-CCCEEEEEEecccccCCCCCCCccccc
Q 011993 15 NTWGYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHG-AGIEVILDVVYNHTNEADDANPYTTSF 81 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~-~Gi~VilD~V~NH~~~~~~~~~~~~~~ 81 (473)
|+=-|+..|-..+++.|-.+ +.+-..||.++||+.+|+ -||--|-|+|+||++. +++|+.++
T Consensus 170 S~S~YSl~dql~~~~~~~~~--~~k~s~eDV~~lV~~l~rewnvlsi~DvV~NHtAn---ns~WlleH 232 (1521)
T KOG3625|consen 170 SRSCYSLADQLELNPDFSRP--NRKYSFEDVGQLVEKLKREWNVLSITDVVYNHTAN---NSKWLLEH 232 (1521)
T ss_pred CCCccchHhhhhcChhhhcc--CCCCCHHHHHHHHHHHHhhcCeeeeehhhhhcccc---CCchhHhC
Confidence 44478999999999988843 233346999999999985 6999999999999999 88888654
No 56
>PF08533 Glyco_hydro_42C: Beta-galactosidase C-terminal domain; InterPro: IPR013739 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found at the C terminus of beta-galactosidase enzymes that belong to the glycosyl hydrolase 42 family []. ; GO: 0004565 beta-galactosidase activity; PDB: 1KWK_A 1KWG_A.
Probab=97.55 E-value=0.00025 Score=50.38 Aligned_cols=55 Identities=20% Similarity=0.288 Sum_probs=31.2
Q ss_pred EEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEE
Q 011993 398 LAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLE 471 (473)
Q Consensus 398 ~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~ 471 (473)
-+-.|.. ++..+++++|++++++++.|+. .+.+++++.... ..++|+||+++||+
T Consensus 3 ev~~R~~-~~~~y~F~~N~s~~~~~v~l~~-----~~~dll~g~~~~-------------~~~~L~p~~v~Vl~ 57 (58)
T PF08533_consen 3 EVTVREN-DGGRYLFLLNFSDEPQTVTLPE-----SYTDLLTGETVS-------------GGLTLPPYGVRVLK 57 (58)
T ss_dssp EEEE-----ETTEEEEEE-SSS-EE----T-----T-EEEES--------------------SEE-TTEEEEEE
T ss_pred EEEEEEc-CCCEEEEEEECCCCCEEEEcCC-----CceecccCccee-------------eEEEECCCEEEEEE
Confidence 3455644 3789999999999999999954 468888875442 33999999999997
No 57
>cd06594 GH31_glucosidase_YihQ YihQ is a bacterial alpha-glucosidase with a conserved glycosyl hydrolase family 31 (GH31) domain that catalyzes the release of an alpha-glucosyl residue from the non-reducing end of alpha-glucoside substrates such as alpha-glucosyl fluoride. Orthologs of YihQ that have not yet been functionally characterized are present in plants and fungi. YihQ has sequence similarity to other GH31 enzymes such as CtsZ, a 6-alpha-glucosyltransferase from Bacillus globisporus, and YicI, an alpha-xylosidase from Echerichia coli. In bacteria, YihQ (along with YihO) is important for bacterial O-antigen capsule assembly and translocation.
Probab=97.54 E-value=0.00022 Score=69.63 Aligned_cols=95 Identities=15% Similarity=0.264 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc---ccCCcCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~np~V~~~i 119 (473)
-+.++||+++|++|++|++-+. -++.. +++-. +.......|++..++|.... +.+...-+|+.||++++..
T Consensus 71 Pdp~~mi~~Lh~~G~~~~~~i~-P~v~~---~~~~~--y~~~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 144 (317)
T cd06594 71 PGLDELIEELKARGIRVLTYIN-PYLAD---DGPLY--YEEAKDAGYLVKDADGSPYLVDFGEFDCGVLDLTNPAARDWF 144 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEec-Cceec---CCchh--HHHHHHCCeEEECCCCCeeeeccCCCCceeeecCCHHHHHHH
Confidence 4578999999999999999554 45444 33221 12222256777766654321 1223345899999999999
Q ss_pred HHHHHHHHHhcCccEEEEeccccc
Q 011993 120 LDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
.+.++..+.+.|||||=+|+-..+
T Consensus 145 ~~~~~~~~~~~Gvdg~w~D~~E~~ 168 (317)
T cd06594 145 KQVIKEMLLDLGLSGWMADFGEYL 168 (317)
T ss_pred HHHHHHHhhhcCCcEEEecCCCCC
Confidence 999998866899999999976644
No 58
>smart00632 Aamy_C Aamy_C domain.
Probab=97.48 E-value=0.00041 Score=52.99 Aligned_cols=71 Identities=15% Similarity=0.244 Sum_probs=47.4
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCC-CCCCeEEEcCCeEEEE
Q 011993 392 NYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAA-GTGSTYNLSPYSSILL 470 (473)
Q Consensus 392 ~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~l~p~~~~vl 470 (473)
..++.+++|.| ++..+|++|.++..+.+.+....+.++|.+++....... ..... .....++|+|.+++++
T Consensus 5 ~~~~~~laF~R----g~~g~VaiN~~~~~~~~~~~t~lp~G~Y~d~l~g~~~g~----~v~V~~~G~~~~~l~~~~~v~i 76 (81)
T smart00632 5 DNGDNQIAFER----GSKGFVAINRSDSDLTITLQTSLPAGTYCDVISGLCTGK----SVTVGSNGIATFTLPAGGAVAI 76 (81)
T ss_pred ECCCeEEEEEC----CCeEEEEEECCCCceEEEEeecCCCcceEEEecCcccCC----EEEECCCCEEEEEECCCCeEEE
Confidence 45556999999 578999999998888877765555688999987511100 00001 1235899999994444
No 59
>PF02065 Melibiase: Melibiase; InterPro: IPR000111 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycosyl hydrolase family 27, family 31 and family 36 alpha-galactosidases form the glycosyl hydrolase clan GH-D (acc_GH from CAZY), a superfamily of alpha-galactosidases, alpha-N-acetylgalactosaminidases, and isomaltodextranases which are likely to share a common catalytic mechanism and structural topology. Alpha-galactosidase (3.2.1.22 from EC) (melibiase) [] catalyzes the hydrolysis of melibiose into galactose and glucose. In man, the deficiency of this enzyme is the cause of Fabry's disease (X-linked sphingolipidosis). Alpha-galactosidase is present in a variety of organisms. There is a considerable degree of similarity in the sequence of alpha-galactosidase from various eukaryotic species. Escherichia coli alpha-galactosidase (gene melA), which requires NAD and magnesium as cofactors, is not structurally related to the eukaryotic enzymes; by contrast, an Escherichia coli plasmid encoded alpha-galactosidase (gene rafA P16551 from SWISSPROT) [] contains a region of about 50 amino acids which is similar to a domain of the eukaryotic alpha-galactosidases. Alpha-N-acetylgalactosaminidase (3.2.1.49 from EC) [] catalyzes the hydrolysis of terminal non-reducing N-acetyl-D-galactosamine residues in N-acetyl-alpha-D- galactosaminides. In man, the deficiency of this enzyme is the cause of Schindler and Kanzaki diseases. The sequence of this enzyme is highly related to that of the eukaryotic alpha-galactosidases.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1KTC_A 1KTB_A 1UAS_A 3H55_A 3H53_A 3IGU_B 3H54_A 3LRM_A 3LRL_A 3LRK_A ....
Probab=97.37 E-value=0.00085 Score=67.04 Aligned_cols=94 Identities=12% Similarity=0.165 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
..|+.|++.+|++||+.-|=+.+--++. ++..++.+ |+|....+...... ...+-.||+.+|+|++++.+.
T Consensus 104 ~Gl~~l~~~i~~~Gmk~GlW~ePe~v~~---~S~l~~~h-----Pdw~l~~~~~~~~~-~r~~~vLD~~~pev~~~l~~~ 174 (394)
T PF02065_consen 104 NGLKPLADYIHSLGMKFGLWFEPEMVSP---DSDLYREH-----PDWVLRDPGRPPTL-GRNQYVLDLSNPEVRDYLFEV 174 (394)
T ss_dssp THHHHHHHHHHHTT-EEEEEEETTEEES---SSCHCCSS-----BGGBTCCTTSE-EC-BTTBEEB-TTSHHHHHHHHHH
T ss_pred CcHHHHHHHHHHCCCeEEEEeccccccc---hhHHHHhC-----ccceeecCCCCCcC-cccceEEcCCCHHHHHHHHHH
Confidence 5699999999999999999998888887 66666444 78876644332221 112345999999999999999
Q ss_pred HHHHHHhcCccEEEEeccccccc
Q 011993 123 LRHWVVEYHVDGFRFDLASVLCR 145 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa~~l~~ 145 (473)
+...+++.|||.|.+|.-..+..
T Consensus 175 i~~ll~~~gidYiK~D~n~~~~~ 197 (394)
T PF02065_consen 175 IDRLLREWGIDYIKWDFNRDITE 197 (394)
T ss_dssp HHHHHHHTT-SEEEEE-TS-TTS
T ss_pred HHHHHHhcCCCEEEeccccCCCC
Confidence 99999999999999998776643
No 60
>cd06599 GH31_glycosidase_Aec37 Glycosyl hydrolase family 31 (GH31) domain of a bacterial protein family represented by Escherichia coli protein Aec37. The gene encoding Aec37 (aec-37) is located within a genomic island (AGI-3) isolated from the extraintestinal avian pathogenic Escherichia coli strain BEN2908. The function of Aec37 and its orthologs is unknown; however, deletion of a region of the genome that includes aec-37 affects the assimilation of seven carbohydrates, decreases growth rate of the strain in minimal medium containing galacturonate or trehalose, and attenuates the virulence of E. coli BEN2908 in chickens. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=97.36 E-value=0.00055 Score=66.92 Aligned_cols=93 Identities=13% Similarity=0.183 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc----cccCCcCCCCCCCHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL----NYAGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~dln~~np~V~~~ 118 (473)
-+.++||+++|++|++|++-+.+- +.. +++.+++. ....|++...++... .+.+...-+|+.||+.++.
T Consensus 73 Pdp~~mi~~L~~~g~k~~~~i~P~-i~~---~~~~y~e~---~~~g~~v~~~~g~~~~~~~~w~g~~~~~Dftnp~a~~w 145 (317)
T cd06599 73 PDPAAFVAKFHERGIRLAPNIKPG-LLQ---DHPRYKEL---KEAGAFIKPPDGREPSIGQFWGGVGSFVDFTNPEGREW 145 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCc-ccC---CCHHHHHH---HHCCcEEEcCCCCCcceecccCCCeEeecCCChHHHHH
Confidence 457899999999999999965443 444 45544332 224677765444321 1122233589999999999
Q ss_pred HHHHHHHHHHhcCccEEEEecccc
Q 011993 119 ILDSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 119 i~~~~~~w~~~~giDGfR~Daa~~ 142 (473)
..+.++.-+.+.|||||=+|....
T Consensus 146 w~~~~~~~~~~~Gvdg~w~D~~E~ 169 (317)
T cd06599 146 WKEGVKEALLDLGIDSTWNDNNEY 169 (317)
T ss_pred HHHHHHHHHhcCCCcEEEecCCCC
Confidence 999996666589999999996653
No 61
>cd06591 GH31_xylosidase_XylS XylS is a glycosyl hydrolase family 31 (GH31) alpha-xylosidase found in prokaryotes, eukaryotes, and archaea, that catalyzes the release of alpha-xylose from the non-reducing terminal side of the alpha-xyloside substrate. XylS has been characterized in Sulfolobus solfataricus where it hydrolyzes isoprimeverose, the p-nitrophenyl-beta derivative of isoprimeverose, and xyloglucan oligosaccharides, and has transxylosidic activity. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. The XylS family corresponds to subgroup 3 in the Ernst et al classification of GH31 enzymes.
Probab=97.33 E-value=0.00076 Score=66.00 Aligned_cols=93 Identities=19% Similarity=0.287 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc--cccCCcCCCCCCCHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL--NYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~dln~~np~V~~~i~ 120 (473)
-+.++||+++|++|+||++-+. -+++. +++.+++. ....|++...++... .+.+...-+|+.||++++.+.
T Consensus 66 Pdp~~mi~~L~~~G~kv~~~i~-P~v~~---~~~~y~e~---~~~g~~v~~~~g~~~~~~w~g~~~~~Dftnp~a~~w~~ 138 (319)
T cd06591 66 PDPKAMVRELHEMNAELMISIW-PTFGP---ETENYKEM---DEKGYLIKTDRGPRVTMQFGGNTRFYDATNPEAREYYW 138 (319)
T ss_pred CCHHHHHHHHHHCCCEEEEEec-CCcCC---CChhHHHH---HHCCEEEEcCCCCeeeeeCCCCccccCCCCHHHHHHHH
Confidence 3568999999999999999554 34554 44444332 224677765544321 223334568999999999988
Q ss_pred HHHHHHHHhcCccEEEEecccc
Q 011993 121 DSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~~ 142 (473)
+.++..+.+.|||||=+|....
T Consensus 139 ~~~~~~~~~~Gvdg~w~D~~Ep 160 (319)
T cd06591 139 KQLKKNYYDKGVDAWWLDAAEP 160 (319)
T ss_pred HHHHHHhhcCCCcEEEecCCCC
Confidence 7776555589999999997664
No 62
>PRK14507 putative bifunctional 4-alpha-glucanotransferase/malto-oligosyltrehalose synthase; Provisional
Probab=97.18 E-value=0.0037 Score=72.31 Aligned_cols=122 Identities=14% Similarity=0.167 Sum_probs=78.5
Q ss_pred HHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc--------------------------ccchhHHHHHH
Q 011993 307 ALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE--------------------------TKKNSHYRFFS 360 (473)
Q Consensus 307 ~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~--------------------------~~~~~l~~~~~ 360 (473)
+-+++||||=||+|.|+=.-. --.+++|.|+++.... .+..-=+-.++
T Consensus 1502 Lklt~PGVPD~YQG~E~wd~S------LVDPDNRRPVDf~~r~~~L~~l~~~~~~~~~~~~~~~l~~~~~dG~iKl~l~~ 1575 (1693)
T PRK14507 1502 LKLTLPGVPDTYQGTEFWDFS------LVDPDNRRPVDYAARARALEALGAMHAEGGHAACPDALLGSWQDGRIKLAVLW 1575 (1693)
T ss_pred HHHcCCCCCcccCCccccccc------CcCCCCCCCCCHHHHHHHHHhhhhcccccccccchhhhhccCCCchHHHHHHH
Confidence 348999999999999965322 1234567777765321 00111235788
Q ss_pred HHHHHHhcccCC-CCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeC-----------------CCCcEE
Q 011993 361 EVIKFRQSRRVF-GREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA-----------------HDFFVK 422 (473)
Q Consensus 361 ~L~~lR~~~p~l-~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~-----------------~~~~~~ 422 (473)
+++++|+++|.| ..|++..+. +.- ...+.|+||.|... +..++||+-- .-....
T Consensus 1576 ~~L~lRr~~p~lF~~G~Y~PL~-~~G------~~~~hv~AFaR~~~-~~~~vvvvpR~~~~l~~~~~~~~~~~~~W~dT~ 1647 (1693)
T PRK14507 1576 RLLADRRARPALFRDGDYRPLK-AEG------ARAEHVVAFARRRG-GDDLVVAVPRLVARLAGEDGELPWSAEAWAGTV 1647 (1693)
T ss_pred HHHHHHHhChhhhccCCeeEEe-ccC------CccccEEEEEecCC-CcEEEEEEecchhhhhcccccCCcccCCCCCCE
Confidence 999999999975 477777652 110 34567999999875 5666665432 123456
Q ss_pred EECCCCCCCCCcEEEEeCCCC
Q 011993 423 VSLPPPPPKRQWFRVVDTNLE 443 (473)
Q Consensus 423 ~~l~~~~~~~~~~~~~~~~~~ 443 (473)
+.||... .+.|++++.+...
T Consensus 1648 ~~LP~~~-~~~w~d~ltg~~~ 1667 (1693)
T PRK14507 1648 VPLVLPA-GSRWVDVLTGREL 1667 (1693)
T ss_pred EeCCCcc-CccceEeccCcee
Confidence 7787432 4689999987543
No 63
>cd06600 GH31_MGAM-like This family includes the following closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), lysosomal acid alpha-glucosidase (GAA), neutral alpha-glucosidase C (GANC), the alpha subunit of neutral alpha-glucosidase AB (GANAB), and alpha-glucosidase II. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal do
Probab=97.12 E-value=0.0016 Score=63.74 Aligned_cols=94 Identities=18% Similarity=0.195 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---cccCCcCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~np~V~~~i 119 (473)
-+.++||+++|++|+||++=+.+ ++..+. ..+-+.+ .....||....++... .+.+...-+|+.||++++..
T Consensus 64 Pdp~~~i~~l~~~g~k~~~~~~P-~i~~~~-~~~~~~~---~~~~~~~v~~~~g~~~~~~~w~G~~~~~Dftnp~a~~ww 138 (317)
T cd06600 64 PEPKKLIDELHKRNVKLVTIVDP-GIRVDQ-NYSPFLS---GMDKGKFCEIESGELFVGKMWPGTTVYPDFTNPDTREWW 138 (317)
T ss_pred CCHHHHHHHHHHCCCEEEEEeec-cccCCC-CChHHHH---HHHCCEEEECCCCCeEEEeecCCCccccCCCChHHHHHH
Confidence 45789999999999999996644 334311 1121211 1124666665554321 12222335799999999999
Q ss_pred HHHHHHHHHhcCccEEEEeccc
Q 011993 120 LDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~ 141 (473)
.+.++..+.+.|||||=+|...
T Consensus 139 ~~~~~~~~~~~gvdg~w~D~~E 160 (317)
T cd06600 139 AGLFSEWLNSQGVDGIWLDMNE 160 (317)
T ss_pred HHHHHHHhhcCCCceEEeeCCC
Confidence 9999998878999999999655
No 64
>PRK10658 putative alpha-glucosidase; Provisional
Probab=96.98 E-value=0.002 Score=68.89 Aligned_cols=94 Identities=16% Similarity=0.251 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc---ccCCcCCCCCCCHHHHHHHH
Q 011993 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 44 dl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~np~V~~~i~ 120 (473)
+.++||+++|++|++|++=+.+ +++. +++.+++. ....|++..++|.... +.+...-+||.||++++...
T Consensus 326 dp~~mi~~L~~~G~k~~~~i~P-~i~~---~s~~f~e~---~~~gy~vk~~~G~~~~~~~W~g~~~~~Dftnp~ar~W~~ 398 (665)
T PRK10658 326 DPEGMLKRLKAKGLKICVWINP-YIAQ---KSPLFKEG---KEKGYLLKRPDGSVWQWDKWQPGMAIVDFTNPDACKWYA 398 (665)
T ss_pred CHHHHHHHHHHCCCEEEEeccC-CcCC---CchHHHHH---HHCCeEEECCCCCEeeeeecCCCceeecCCCHHHHHHHH
Confidence 5689999999999999987655 3444 45444332 2246777776665432 22333458999999999999
Q ss_pred HHHHHHHHhcCccEEEEeccccccc
Q 011993 121 DSLRHWVVEYHVDGFRFDLASVLCR 145 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~~l~~ 145 (473)
+.++.++ +.|||||-.|....++.
T Consensus 399 ~~~~~l~-d~Gvdgfw~D~gE~~p~ 422 (665)
T PRK10658 399 DKLKGLL-DMGVDCFKTDFGERIPT 422 (665)
T ss_pred HHHHHHH-hcCCcEEEecCCceeec
Confidence 9999988 79999999997665543
No 65
>cd06602 GH31_MGAM_SI_GAA This family includes the following three closely related glycosyl hydrolase family 31 (GH31) enzymes: maltase-glucoamylase (MGAM), sucrase-isomaltase (SI), and lysosomal acid alpha-glucosidase (GAA), also known as acid-maltase. MGAM is one of the two enzymes responsible for catalyzing the last glucose-releasing step in starch digestion. SI is implicated in the digestion of dietary starch and major disaccharides such as sucrose and isomaltose, while GAA degrades glycogen in the lysosome, cleaving both alpha-1,4 and alpha-1,6 glucosidic linkages. MGAM and SI are anchored to small-intestinal brush-border epithelial cells. The absence of SI from the brush border membrane or its malfunction is associated with malabsorption disorders such as congenital sucrase-isomaltase deficiency (CSID). The domain architectures of MGAM and SI include two tandem GH31 catalytic domains, an N-terminal domain found near the membrane-bound end, and a C-terminal luminal domain. Both of
Probab=96.96 E-value=0.0027 Score=62.61 Aligned_cols=95 Identities=14% Similarity=0.184 Sum_probs=62.5
Q ss_pred HHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---cccCCcCCCCCCCHHHHHHHHHH
Q 011993 46 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 46 ~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~np~V~~~i~~~ 122 (473)
++||+++|++|+||++=+.+ ++..+..+.. ...+.......+|+.+.+|... .+.+...-+||.||++++...+.
T Consensus 69 ~~mi~~L~~~G~k~~~~i~P-~v~~~~~~~~-~~~~~e~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww~~~ 146 (339)
T cd06602 69 PEFVDELHANGQHYVPILDP-AISANEPTGS-YPPYDRGLEMDVFIKNDDGSPYIGKVWPGYTVFPDFLNPNTQEWWTDE 146 (339)
T ss_pred HHHHHHHHHCCCEEEEEEeC-ccccCcCCCC-CHHHHHHHHCCeEEECCCCCEEEEEeCCCCCcCcCCCCHHHHHHHHHH
Confidence 99999999999999997644 3333100001 1112111124667765555432 11222334799999999999999
Q ss_pred HHHHHHhcCccEEEEecccc
Q 011993 123 LRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa~~ 142 (473)
++..+.+.|||||=+|....
T Consensus 147 ~~~~~~~~Gvdg~w~D~~Ep 166 (339)
T cd06602 147 IKDFHDQVPFDGLWIDMNEP 166 (339)
T ss_pred HHHHHhcCCCcEEEecCCCC
Confidence 99988779999999997653
No 66
>PLN02635 disproportionating enzyme
Probab=96.81 E-value=0.0085 Score=62.07 Aligned_cols=117 Identities=18% Similarity=0.184 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEec--ccccCCCCCCCcccc--c--cC--------CCCccceeecCCCCcccccCCcCCC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVY--NHTNEADDANPYTTS--F--RG--------IDNKVYYMVDGTGQLLNYAGCGNTL 108 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~--NH~~~~~~~~~~~~~--~--~~--------~~~~~~~~~~~~~~~~~~~~~~~dl 108 (473)
++++++.+.||++||++|-|+.+ ++-|. .-|... | +. ..+|++|..... + +| .|-+
T Consensus 224 ~Qw~~l~~yA~~~Gi~L~gDlpi~Va~dSa----DvWa~~~lF~ld~~g~p~~~aGaPPD~Fs~~GQ----~-WG-~P~y 293 (538)
T PLN02635 224 RQWQAVRSYANEKGISIIGDMPIYVGGHSA----DVWANRKLFLLNKTGFPLLVSGVPPDAFSETGQ----L-WG-SPLY 293 (538)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecccCCCcH----HHhcCHHhhcCCCCCCcceeeeCCCCcCCcccc----c-CC-CcCc
Confidence 56888999999999999999985 44332 223210 1 00 122344332110 0 00 2333
Q ss_pred CCCCHHHH-----HHHHHHHHHHHHhcCccEEEEeccccc------ccC----CCCCCCCC--HHHHHHHHhccccCCce
Q 011993 109 NCNHPVVM-----ELILDSLRHWVVEYHVDGFRFDLASVL------CRG----TDGSPLNA--PPLIRAIAKDAILSRCK 171 (473)
Q Consensus 109 n~~np~V~-----~~i~~~~~~w~~~~giDGfR~Daa~~l------~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~ 171 (473)
|+ ... ..+++-++.-++ .+|++|||.+-.+ +.+ ..|.|... .+++..+.+ ..+++.
T Consensus 294 ~w---~~l~~~gy~ww~~Rlr~~~~--~~d~lRIDHf~Gf~r~W~IP~g~~ta~~G~wv~~Pg~~l~~~l~~--~~~~~~ 366 (538)
T PLN02635 294 DW---KAMAKDGYSWWAGRMRRALE--LYDEFRIDHFRGFAGYWAVPADAKTAMNGRWKVGPGKSFFDAIKK--AVGKID 366 (538)
T ss_pred CH---HHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhheeeeccCCCCCCCCCeeeeCCHHHHHHHHHH--HcCCCC
Confidence 33 222 223334444443 6788999977764 322 12555444 356666544 345788
Q ss_pred EEecC
Q 011993 172 IIAEP 176 (473)
Q Consensus 172 li~E~ 176 (473)
+|||-
T Consensus 367 vIaED 371 (538)
T PLN02635 367 IIAED 371 (538)
T ss_pred EEEee
Confidence 99993
No 67
>PRK14508 4-alpha-glucanotransferase; Provisional
Probab=96.79 E-value=0.053 Score=56.12 Aligned_cols=118 Identities=21% Similarity=0.248 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCC-------------cCCCC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGC-------------GNTLN 109 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~dln 109 (473)
++++++.+.||++||.+|-|+.+.= +.++ ..-|.. ++.|..+..|....-.|+ .|-+|
T Consensus 198 ~Q~~~~~~yA~~~Gi~L~gDLpigV-~~ds-aDvWa~-------~~lF~l~~~~~p~~vaGaPPD~Fs~~GQ~WG~P~y~ 268 (497)
T PRK14508 198 RQWKALKAYANDKGIEIIGDLPIYV-AYDS-ADVWAN-------PELFKLDEDGKPTVVAGVPPDYFSETGQLWGNPVYN 268 (497)
T ss_pred HHHHHHHHHHHHCCCEEEEeeeccc-CCCC-HHHHcC-------hhhhcCCCCCCcceeeeCCCCCCCcccCcCCCCCcC
Confidence 5688899999999999999998743 2211 112221 233333322221111111 23344
Q ss_pred CCCHHHH-----HHHHHHHHHHHHhcCccEEEEeccccc------ccC----CCCCCCCC--HHHHHHHHhccccCCceE
Q 011993 110 CNHPVVM-----ELILDSLRHWVVEYHVDGFRFDLASVL------CRG----TDGSPLNA--PPLIRAIAKDAILSRCKI 172 (473)
Q Consensus 110 ~~np~V~-----~~i~~~~~~w~~~~giDGfR~Daa~~l------~~~----~~~~~~~~--~~~~~~~~~~~~~~~~~l 172 (473)
+ +.. ..+++-++.-++ .+|++|||.+-.+ +.+ ..|.|... .+++..+..+. +++.+
T Consensus 269 w---~~l~~~gy~ww~~rlr~~~~--~~~~lRIDH~~Gf~r~W~IP~~~~~a~~G~~v~~p~~~l~~~l~~e~--~~~~v 341 (497)
T PRK14508 269 W---DALRKDGYRWWIERLRRSFK--LYDIVRIDHFRGFEAYWEIPAGEKTAINGRWVPGPGKDLFEAVKEEL--GDLPI 341 (497)
T ss_pred H---HHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeecCCHHHHHHHHHHHh--CCCCE
Confidence 3 332 224445555453 6788999987773 432 12555433 34566665543 56889
Q ss_pred EecC
Q 011993 173 IAEP 176 (473)
Q Consensus 173 i~E~ 176 (473)
|||-
T Consensus 342 igED 345 (497)
T PRK14508 342 IAED 345 (497)
T ss_pred EEeE
Confidence 9993
No 68
>cd06604 GH31_glucosidase_II_MalA Alpha-glucosidase II (alpha-D-glucoside glucohydrolase) is a glycosyl hydrolase family 31 (GH31) enzyme, found in bacteria and plants, which has exo-alpha-1,4-glucosidase and oligo-1,6-glucosidase activities. Alpha-glucosidase II has been characterized in Bacillus thermoamyloliquefaciens where it forms a homohexamer. This family also includes the MalA alpha-glucosidase from Sulfolobus sulfataricus and the AglA alpha-glucosidase from Picrophilus torridus. MalA is part of the carbohydrate-metabolizing machinery that allows this organism to utilize carbohydrates, such as maltose, as the sole carbon and energy source.
Probab=96.54 E-value=0.007 Score=59.84 Aligned_cols=94 Identities=21% Similarity=0.262 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---cccCCcCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~np~V~~~i 119 (473)
-+.++||+++|++|++|++=+.+ |+..+. ..+-+.+ .....||+...+|... .+.+...-+||.||+.++.+
T Consensus 64 Pdp~~m~~~l~~~g~~~~~~~~P-~v~~~~-~~~~~~e---~~~~g~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06604 64 PDPKELIKELHEQGFKVVTIIDP-GVKVDP-GYDVYEE---GLENDYFVKDPDGELYIGRVWPGLSAFPDFTNPKVREWW 138 (339)
T ss_pred CCHHHHHHHHHHCCCEEEEEEeC-ceeCCC-CChHHHH---HHHCCeEEECCCCCEEEEEecCCCccccCCCChHHHHHH
Confidence 34689999999999999987654 333200 1222221 2224667766555321 12222334799999999999
Q ss_pred HHHHHHHHHhcCccEEEEecccc
Q 011993 120 LDSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~~ 142 (473)
.+.++..+ +.|||||-+|....
T Consensus 139 ~~~~~~~~-~~Gvdg~w~D~~Ep 160 (339)
T cd06604 139 GSLYKKFV-DLGVDGIWNDMNEP 160 (339)
T ss_pred HHHHHHHh-hCCCceEeecCCCc
Confidence 99999988 89999999997654
No 69
>COG1649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.53 E-value=0.0057 Score=60.78 Aligned_cols=100 Identities=19% Similarity=0.160 Sum_probs=61.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCC-cccccCC--cCCCCCCCHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ-LLNYAGC--GNTLNCNHPVVM 116 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~--~~dln~~np~V~ 116 (473)
...+=|..+|++||+|||+|+-=+-+--++.. .+++.... +.|......+. +....++ ..-||=..|+|+
T Consensus 112 ~g~DpLa~~I~~AHkr~l~v~aWf~~~~~a~~--~s~~~~~~-----p~~~~~~~~~~~~~~~~~~~~~~~ldPg~Pevq 184 (418)
T COG1649 112 PGYDPLAFVIAEAHKRGLEVHAWFNPYRMAPP--TSPLTKRH-----PHWLTTKRPGWVYVRHQGWGKRVWLDPGIPEVQ 184 (418)
T ss_pred CCCChHHHHHHHHHhcCCeeeechhhcccCCC--CChhHhhC-----CCCcccCCCCeEEEecCCceeeeEeCCCChHHH
Confidence 33477899999999999999765544444441 12211111 22222211111 1111111 233666779999
Q ss_pred HHHHHHHHHHHHhcCccEEEEecccccccC
Q 011993 117 ELILDSLRHWVVEYHVDGFRFDLASVLCRG 146 (473)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~Daa~~l~~~ 146 (473)
++|.+.+..-+++|.|||+.+|-.-..+.+
T Consensus 185 ~~i~~lv~evV~~YdvDGIQfDd~fy~~~~ 214 (418)
T COG1649 185 DFITSLVVEVVRNYDVDGIQFDDYFYYPIP 214 (418)
T ss_pred HHHHHHHHHHHhCCCCCceecceeecccCc
Confidence 999999999999999999999965554333
No 70
>PF01055 Glyco_hydro_31: Glycosyl hydrolases family 31 ; InterPro: IPR000322 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 31 GH31 from CAZY comprises enzymes with several known activities; alpha-glucosidase (3.2.1.20 from EC), alpha-galactosidase (3.2.1.22 from EC); glucoamylase (3.2.1.3 from EC), sucrase-isomaltase (3.2.1.48 from EC); isomaltase (3.2.1.10 from EC); alpha-xylosidase (3.2.1 from EC); alpha-glucan lyase (4.2.2.13 from EC). Glycoside hydrolase family 31 groups a number of glycosyl hydrolases on the basis of sequence similarities [, , ] An aspartic acid has been implicated [] in the catalytic activity of sucrase, isomaltase, and lysosomal alpha-glucosidase.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3L4U_A 3L4X_A 3L4W_A 3L4V_A 3CTT_A 2QMJ_A 2QLY_A 3L4Z_A 3L4Y_A 3L4T_A ....
Probab=96.46 E-value=0.0038 Score=64.18 Aligned_cols=98 Identities=22% Similarity=0.379 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---cccCCcCCCCCCCHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~np~V~~~ 118 (473)
..+.++|++.+|++|++|++-+.+ ++.. +++-...+.......|+...+++... .+.+...-+|+.||++++.
T Consensus 82 FPd~~~~~~~l~~~G~~~~~~~~P-~v~~---~~~~~~~~~~~~~~~~~v~~~~g~~~~~~~w~g~~~~~Dftnp~a~~w 157 (441)
T PF01055_consen 82 FPDPKQMIDELHDQGIKVVLWVHP-FVSN---DSPDYENYDEAKEKGYLVKNPDGSPYIGRVWPGKGGFIDFTNPEARDW 157 (441)
T ss_dssp TTTHHHHHHHHHHTT-EEEEEEES-EEET---TTTB-HHHHHHHHTT-BEBCTTSSB-EEEETTEEEEEB-TTSHHHHHH
T ss_pred ccchHHHHHhHhhCCcEEEEEeec-ccCC---CCCcchhhhhHhhcCceeecccCCcccccccCCcccccCCCChhHHHH
Confidence 357899999999999999999988 5554 34300111112224666665555221 1222244588999999999
Q ss_pred HHHHHHHHHHhcCccEEEEeccccc
Q 011993 119 ILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 119 i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
+.+.++..++.+|||||-+|.....
T Consensus 158 ~~~~~~~~~~~~Gvdg~w~D~~E~~ 182 (441)
T PF01055_consen 158 WKEQLKELLDDYGVDGWWLDFGEPS 182 (441)
T ss_dssp HHHHHHHHHTTST-SEEEEESTTTB
T ss_pred HHHHHHHHHhccCCceEEeecCCcc
Confidence 9999999996679999999975544
No 71
>cd06598 GH31_transferase_CtsZ CtsZ (cyclic tetrasaccharide-synthesizing enzyme Z) is a bacterial 6-alpha-glucosyltransferase, first identified in Arthrobacter globiformis, that produces cyclic tetrasaccharides together with a closely related enzyme CtsY. CtsZ and CtsY both have a glycosyl hydrolase family 31 (GH31) catalytic domain. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=96.42 E-value=0.011 Score=57.85 Aligned_cols=91 Identities=14% Similarity=0.105 Sum_probs=61.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccc-eeecCCCCccc---ccCCcCCCCCCCHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVY-YMVDGTGQLLN---YAGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~---~~~~~~dln~~np~V~~~ 118 (473)
-+.++||+++|++|++|++=+.+ ++.. +++.+++.. ...| +.....+.... +.+...-+|+.||++++.
T Consensus 70 Pdp~~mi~~L~~~G~k~~~~v~P-~v~~---~~~~y~e~~---~~g~l~~~~~~~~~~~~~~w~g~~~~~Dftnp~a~~w 142 (317)
T cd06598 70 PDPAGMIADLAKKGVKTIVITEP-FVLK---NSKNWGEAV---KAGALLKKDQGGVPTLFDFWFGNTGLIDWFDPAAQAW 142 (317)
T ss_pred CCHHHHHHHHHHcCCcEEEEEcC-cccC---CchhHHHHH---hCCCEEEECCCCCEeeeeccCCCccccCCCCHHHHHH
Confidence 34689999999999999998754 3344 455443321 1344 33333332211 122234578999999999
Q ss_pred HHHHHHHHHHhcCccEEEEeccc
Q 011993 119 ILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 119 i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.+.++... +.|||||=+|.-.
T Consensus 143 ~~~~~~~~~-~~Gvdg~w~D~~E 164 (317)
T cd06598 143 FHDNYKKLI-DQGVTGWWGDLGE 164 (317)
T ss_pred HHHHHHHhh-hCCccEEEecCCC
Confidence 999999886 8999999999654
No 72
>COG1501 Alpha-glucosidases, family 31 of glycosyl hydrolases [Carbohydrate transport and metabolism]
Probab=96.36 E-value=0.0096 Score=64.61 Aligned_cols=95 Identities=20% Similarity=0.231 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCC---cCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGC---GNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~dln~~np~V~~~i 119 (473)
-+.++||+..|++|||+|.=+.|.=.. +++.+++. ....|+..+++|.......| +.-+||.||++|+..
T Consensus 321 P~pk~mi~~l~~~Gikl~~~i~P~i~~----d~~~~~e~---~~~Gy~~k~~~g~~~~~~~w~~~~a~~DFtnp~~r~Ww 393 (772)
T COG1501 321 PDPKQMIAELHEKGIKLIVIINPYIKQ----DSPLFKEA---IEKGYFVKDPDGEIYQADFWPGNSAFPDFTNPDAREWW 393 (772)
T ss_pred CCHHHHHHHHHhcCceEEEEecccccc----CCchHHHH---HHCCeEEECCCCCEeeecccCCcccccCCCCHHHHHHH
Confidence 456799999999999999877664433 45555432 23588888877765543333 345799999999999
Q ss_pred HH-HHHHHHHhcCccEEEEeccccccc
Q 011993 120 LD-SLRHWVVEYHVDGFRFDLASVLCR 145 (473)
Q Consensus 120 ~~-~~~~w~~~~giDGfR~Daa~~l~~ 145 (473)
.+ ....++ ++|||||=.|......-
T Consensus 394 ~~~~~~~l~-d~Gv~g~W~D~nEp~~~ 419 (772)
T COG1501 394 ASDKKKNLL-DLGVDGFWNDMNEPEPF 419 (772)
T ss_pred HHHHHhHHH-hcCccEEEccCCCCccc
Confidence 94 556677 89999999998776543
No 73
>PF13200 DUF4015: Putative glycosyl hydrolase domain
Probab=96.34 E-value=0.017 Score=55.68 Aligned_cols=89 Identities=18% Similarity=0.187 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCc-ccccCCcCCCCCCCHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dln~~np~V~~~i~ 120 (473)
+.|+++|+++||++||++|.=+|. -. +.... ..+++|.+...+|.. .+..+ ..=+|--+++||+|++
T Consensus 60 i~D~~~l~~~l~e~gIY~IARIv~---Fk---D~~la-----~~~pe~av~~~~G~~w~d~~~-~~WvnP~~~evw~Y~i 127 (316)
T PF13200_consen 60 IKDLKALVKKLKEHGIYPIARIVV---FK---DPVLA-----EAHPEWAVKTKDGSVWRDNEG-EAWVNPYSKEVWDYNI 127 (316)
T ss_pred ccCHHHHHHHHHHCCCEEEEEEEE---ec---ChHHh-----hhChhhEEECCCCCcccCCCC-CccCCCCCHHHHHHHH
Confidence 479999999999999999998864 22 22111 113677665443321 11111 1225666789999999
Q ss_pred HHHHHHHHhcCccEEEEeccccc
Q 011993 121 DSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~~l 143 (473)
+++...+ +.|+|.+.+|-+.+=
T Consensus 128 ~IA~Eaa-~~GFdEIqfDYIRFP 149 (316)
T PF13200_consen 128 DIAKEAA-KLGFDEIQFDYIRFP 149 (316)
T ss_pred HHHHHHH-HcCCCEEEeeeeecC
Confidence 9999999 899999999976653
No 74
>PRK10426 alpha-glucosidase; Provisional
Probab=96.34 E-value=0.011 Score=63.16 Aligned_cols=97 Identities=13% Similarity=0.175 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc--cc-CCcCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN--YA-GCGNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~~~~dln~~np~V~~~i 119 (473)
-+.++||+++|++|+||++=+-+. +.. +++.+++. ....|+..+.+|.... ++ +...-+|+.||++++.+
T Consensus 269 Pdp~~mi~~L~~~G~k~v~~i~P~-v~~---~~~~y~e~---~~~gy~vk~~~g~~~~~~~~~~~~~~~Dftnp~ar~Ww 341 (635)
T PRK10426 269 PQLDSRIKQLNEEGIQFLGYINPY-LAS---DGDLCEEA---AEKGYLAKDADGGDYLVEFGEFYAGVVDLTNPEAYEWF 341 (635)
T ss_pred CCHHHHHHHHHHCCCEEEEEEcCc-cCC---CCHHHHHH---HHCCcEEECCCCCEEEeEecCCCceeecCCCHHHHHHH
Confidence 467999999999999999987553 233 34433332 2256777766654321 11 12335899999999999
Q ss_pred HHHHHHHHHhcCccEEEEecccccccC
Q 011993 120 LDSLRHWVVEYHVDGFRFDLASVLCRG 146 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~~l~~~ 146 (473)
.+.++..+.+.|||||-+|....++.+
T Consensus 342 ~~~~~~~~~~~Gvdg~w~D~~E~~p~d 368 (635)
T PRK10426 342 KEVIKKNMIGLGCSGWMADFGEYLPTD 368 (635)
T ss_pred HHHHHHHHhhcCCCEEeeeCCCCCCCc
Confidence 998876666899999999987766544
No 75
>COG3280 TreY Maltooligosyl trehalose synthase [Carbohydrate transport and metabolism]
Probab=95.90 E-value=0.01 Score=61.98 Aligned_cols=98 Identities=11% Similarity=0.130 Sum_probs=62.8
Q ss_pred HHHHHHhcCceeeecccccccccCCCCCCCCCCCCCCCccccccc-------ccchh---------HHHHHHHHHHHHhc
Q 011993 305 HLALMVSQGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLE-------TKKNS---------HYRFFSEVIKFRQS 368 (473)
Q Consensus 305 ~~~~l~~pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~-------~~~~~---------l~~~~~~L~~lR~~ 368 (473)
..+-++.||||=||+|.|.=... --.++.|.|.+..... ..+.+ =.....+++.+|+.
T Consensus 712 ~LlkltaPGVPD~YQGtE~wd~S------LVDPDNRRpVDf~~~~~~L~~lq~~~~~l~~~~~Dg~K~~v~~~aL~lR~~ 785 (889)
T COG3280 712 TLLKLTAPGVPDIYQGTELWDFS------LVDPDNRRPVDFATRAQALKALQEGDFELLEHWLDGIKQAVTAAALRLRRE 785 (889)
T ss_pred HHHHHcCCCCCccccchhhhhcc------ccCCCCCCCCcHHHHHHHHhcCCCCchhHHHHhhhhHHHHHHHHHHHHHHh
Confidence 33458899999999999954321 1223445565554432 11111 12366789999999
Q ss_pred ccC-CCCcCCCCCCcceeeccccCCCCCcEEEEEEecCCCCeEEEEEeC
Q 011993 369 RRV-FGREDFLNINDVTWHEDNWDNYDSKFLAFTLHDNNGADIYLAFNA 416 (473)
Q Consensus 369 ~p~-l~~g~~~~~~~~~~~~~~~~~~~~~v~a~~R~~~~~~~~lvv~N~ 416 (473)
+|. +..|++..+.. .. ...+.|+||.|... +..+++|.+-
T Consensus 786 ~~elF~~GdY~Pl~~---~G----~~a~hviAFaR~~~-~~~~i~v~Pr 826 (889)
T COG3280 786 HPELFAGGDYLPLFA---AG----PAADHVIAFARGKD-DQFAITVAPR 826 (889)
T ss_pred chHhhcCCCeeeecc---cC----chhHHHHHHhhccC-CceeEEeehH
Confidence 997 88888877621 00 23468999999775 6777777764
No 76
>PF13199 Glyco_hydro_66: Glycosyl hydrolase family 66; PDB: 3VMO_A 3VMN_A 3VMP_A.
Probab=95.69 E-value=0.06 Score=56.16 Aligned_cols=114 Identities=14% Similarity=0.243 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCC----cccc-cCC---cCCCCCCCH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ----LLNY-AGC---GNTLNCNHP 113 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~---~~dln~~np 113 (473)
.+-+|.+|++||+.||++|.=.-+.-...+ +. . ...+++|+.....+. ...+ ..| .-=.|-.||
T Consensus 169 ~~~Vk~yI~~ah~~Gmkam~Ynmiyaa~~~-----~~-~--~gv~~eW~ly~d~~~~~~~~~~l~~~w~s~lyl~dP~N~ 240 (559)
T PF13199_consen 169 TSTVKDYINAAHKYGMKAMAYNMIYAANNN-----YE-E--DGVSPEWGLYKDDSHSNQDTYDLPDGWPSDLYLMDPGNP 240 (559)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESSEEETT--------S----SS-GGBEEESSSBTSB-EEEETT-E--EEEEB-TT-H
T ss_pred HHHHHHHHHHHHHcCcceehhHhhhccccC-----cc-c--ccCCchhhhhhccCCCccceeecCcccccceEEecCCCH
Confidence 578999999999999999986555533321 11 0 122356766632221 1112 111 112578899
Q ss_pred HHHHHHHHHHHHHHHhcCccEEEEecccccccC--CCCCCC-CC----HHHHHHHHh
Q 011993 114 VVMELILDSLRHWVVEYHVDGFRFDLASVLCRG--TDGSPL-NA----PPLIRAIAK 163 (473)
Q Consensus 114 ~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~--~~~~~~-~~----~~~~~~~~~ 163 (473)
+=|++|++-+...++.+|+|||-+|........ ..|... .. ..+|+++++
T Consensus 241 ~WQ~yI~~q~~~~~~~~gFDG~hlDq~G~~~~~~d~~G~~i~~l~~~y~~Fi~~~K~ 297 (559)
T PF13199_consen 241 EWQNYIINQMNKAIQNFGFDGWHLDQLGNRGTVYDYDGNKIYDLSDGYASFINAMKE 297 (559)
T ss_dssp HHHHHHHHHHHHHHHHHT--EEEEE-S--EEEEGGTT---GGECHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCCceEeeeccCCCCccccCCCCCchhhHHHHHHHHHHHHH
Confidence 999999999999999999999999987754322 334433 22 346666665
No 77
>PF02324 Glyco_hydro_70: Glycosyl hydrolase family 70; InterPro: IPR003318 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glucosyltransferases or sucrose 6-glycosyl transferases (GTF-S) (2.4.1.5 from EC, GH70 from CAZY) catalyse the transfer of D-glucopyramnosyl units from sucrose onto acceptor molecules []. This signature roughly corresponds to the N-terminal catalytic domain of the enzyme. Members of this group also contain the putative cell wall binding repeat (IPR002479 from INTERPRO).; GO: 0009250 glucan biosynthetic process; PDB: 3AIE_G 3AIB_D 3AIC_E 3TTQ_A 3TTO_D 3KLL_A 3KLK_A 3HZ3_A.
Probab=95.67 E-value=0.016 Score=60.03 Aligned_cols=46 Identities=30% Similarity=0.506 Sum_probs=34.8
Q ss_pred cCCCCCcccCC----CCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 17 WGYSTINFFSP----MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 17 ~GY~~~d~~~v----dp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-||+-+|-|.+ .-.||+ .+||+.-|+++|+.||+||.|+||+-+-.
T Consensus 625 NGYAFtDRYDLg~s~ptKYGs--------~~dL~~AikALH~~GiqviaDwVpdQiYn 674 (809)
T PF02324_consen 625 NGYAFTDRYDLGMSKPTKYGS--------VEDLRNAIKALHAAGIQVIADWVPDQIYN 674 (809)
T ss_dssp -SSSBS-TT-SSSSS-BTTB---------HHHHHHHHHHHHHTT-EEEEEE-TSEE--
T ss_pred cCccccchhhhcCCCCCCCCC--------HHHHHHHHHHHHHcCcchhhhhchHhhhC
Confidence 39999999865 568999 59999999999999999999999999764
No 78
>PLN02763 hydrolase, hydrolyzing O-glycosyl compounds
Probab=95.43 E-value=0.048 Score=60.22 Aligned_cols=92 Identities=14% Similarity=0.186 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc---ccCCcCCCCCCCHHHHHHHH
Q 011993 44 EFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN---YAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 44 dl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~dln~~np~V~~~i~ 120 (473)
+.++||+.+|++|+++|.=+.+ ++.. +..+. .++.....++|....+|.... |.+...=.||.||++++...
T Consensus 242 dP~~mv~~Lh~~G~kvv~iidP-gI~~---d~gY~-~y~eg~~~~~fvk~~~G~~y~G~vWpG~~~fpDFTnP~ar~WW~ 316 (978)
T PLN02763 242 DPKGLADDLHSIGFKAIWMLDP-GIKA---EEGYF-VYDSGCENDVWIQTADGKPFVGEVWPGPCVFPDFTNKKTRSWWA 316 (978)
T ss_pred CHHHHHHHHHHCCCEEEEEEcC-CCcc---CCCCH-HHHhHhhcCeeEECCCCCeeEeeecCCCccccCCCCHHHHHHHH
Confidence 4589999999999999875433 2222 22222 222222245666655554221 11212235899999999999
Q ss_pred HHHHHHHHhcCccEEEEeccc
Q 011993 121 DSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.++.++ +.|||||=+|+-.
T Consensus 317 ~~~k~l~-d~GVDG~W~DmnE 336 (978)
T PLN02763 317 NLVKDFV-SNGVDGIWNDMNE 336 (978)
T ss_pred HHHHHHh-cCCCcEEEccCCC
Confidence 9999988 7999999999754
No 79
>cd06542 GH18_EndoS-like Endo-beta-N-acetylglucosaminidases are bacterial chitinases that hydrolyze the chitin core of various asparagine (N)-linked glycans and glycoproteins. The endo-beta-N-acetylglucosaminidases have a glycosyl hydrolase family 18 (GH18) catalytic domain. Some members also have an additional C-terminal glycosyl hydrolase family 20 (GH20) domain while others have an N-terminal domain of unknown function (pfam08522). Members of this family include endo-beta-N-acetylglucosaminidase S (EndoS) from Streptococcus pyogenes, EndoF1, EndoF2, EndoF3, and EndoH from Flavobacterium meningosepticum, and EndoE from Enterococcus faecalis. EndoS is a secreted endoglycosidase from Streptococcus pyogenes that specifically hydrolyzes the glycan on human IgG between two core N-acetylglucosamine residues. EndoE is a secreted endoglycosidase, encoded by the ndoE gene in Enterococcus faecalis, that hydrolyzes the glycan on human RNase B.
Probab=95.31 E-value=0.073 Score=50.31 Aligned_cols=86 Identities=17% Similarity=0.222 Sum_probs=59.2
Q ss_pred CCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCC
Q 011993 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQ 97 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (473)
.+++...+..++++-+. .......+++++.|..+|++|+||++=+--+|.+. . +
T Consensus 27 s~D~v~lf~~~~~~~~~-~~~~~~~~~~~~~i~~l~~kG~KVl~sigg~~~~~----~--~------------------- 80 (255)
T cd06542 27 SVDMVSLFAANINLDAA-TAVQFLLTNKETYIRPLQAKGTKVLLSILGNHLGA----G--F------------------- 80 (255)
T ss_pred cceEEEEcccccCcccc-cchhhhhHHHHHHHHHHhhCCCEEEEEECCCCCCC----C--c-------------------
Confidence 57777777766665420 00001138899999999999999999886555442 0 0
Q ss_pred cccccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 011993 98 LLNYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 98 ~~~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Da 139 (473)
....+++-++.+.+.+..+++++|+||+=||-
T Consensus 81 ----------~~~~~~~~~~~fa~~l~~~v~~yglDGiDiD~ 112 (255)
T cd06542 81 ----------ANNLSDAAAKAYAKAIVDTVDKYGLDGVDFDD 112 (255)
T ss_pred ----------cccCCHHHHHHHHHHHHHHHHHhCCCceEEee
Confidence 01223566788888888888899999999994
No 80
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=95.28 E-value=0.28 Score=56.50 Aligned_cols=124 Identities=17% Similarity=0.277 Sum_probs=68.8
Q ss_pred HHHHHHHHHHHHCCCEE--EEEEecccccCCCCCCCcccc--c----cCCCCccceeecCCCCcccccCCcCCCCCCC--
Q 011993 43 WEFKEMVKALHGAGIEV--ILDVVYNHTNEADDANPYTTS--F----RGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH-- 112 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~V--ilD~V~NH~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n-- 112 (473)
.+++++-+.|+++||+| |-|+.+.=... + ..-|... | .-..+|++|..... + ++ .|-+|+..
T Consensus 932 ~Q~~~~~~~A~~~Gm~iGl~gDLpvgv~~d-s-advWa~~~~f~l~~~~GaPPD~fs~~GQ----~-WG-~P~y~w~~l~ 1003 (1221)
T PRK14510 932 RQWQAAKDYAQEQGLSIGFYGDLAIGVAPD-G-ADAWAERSCFALDVSIGAPPDYFNPEGQ----N-WG-LPPYDPRALR 1003 (1221)
T ss_pred HHHHHHHHHHHHCCCEEeEEeeeeeeeCCC-c-HHHhcCHHHhcCCCccCCCCCcCCcccc----c-CC-CcCcCHHHHH
Confidence 56889999999999999 99998743221 1 2233321 1 11233555533211 0 11 23344311
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEeccccc------ccCC---CCCCCCC--HHHHHHHHhccccCCceEEecC
Q 011993 113 PVVMELILDSLRHWVVEYHVDGFRFDLASVL------CRGT---DGSPLNA--PPLIRAIAKDAILSRCKIIAEP 176 (473)
Q Consensus 113 p~V~~~i~~~~~~w~~~~giDGfR~Daa~~l------~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~li~E~ 176 (473)
..-...+++-++.-++ .+|++|||.+-.+ +... .|.|... .+++..+..+..+.++.+|||-
T Consensus 1004 ~~gy~~w~~rlr~~~~--~~~~lRIDH~~G~~r~W~IP~~~~a~~G~~v~~P~~~l~~~l~~e~~r~~~~vIgED 1076 (1221)
T PRK14510 1004 RDGYRWFIERIRANMR--HAGALRIDHVRGLERLFEVPQGASAKEGAYLKGPGEELFGQVALESQRAQCPVIGED 1076 (1221)
T ss_pred hcCcHHHHHHHHHHHH--hCCeEEeccHHhhHHheeCCCCCCCCCCeEEECCHHHHHHHHHHHhCccCCcEEEee
Confidence 0112234445555553 7888999977664 3211 2555443 4677777776666678999993
No 81
>cd06603 GH31_GANC_GANAB_alpha This family includes the closely related glycosyl hydrolase family 31 (GH31) isozymes, neutral alpha-glucosidase C (GANC) and the alpha subunit of heterodimeric neutral alpha-glucosidase AB (GANAB). Initially distinguished on the basis of differences in electrophoretic mobility in starch gel, GANC and GANAB have been shown to have other differences, including those of substrate specificity. GANC and GANAB are key enzymes in glycogen metabolism that hydrolyze terminal, non-reducing 1,4-linked alpha-D-glucose residues from glycogen in the endoplasmic reticulum. The GANC/GANAB family includes the alpha-glucosidase II (ModA) from Dictyostelium discoideum as well as the alpha-glucosidase II (GLS2, or ROT2 - Reversal of TOR2 lethality protein 2) from Saccharomyces cerevisiae.
Probab=95.27 E-value=0.049 Score=53.81 Aligned_cols=94 Identities=13% Similarity=0.046 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---cccCCcCCCCCCCHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~dln~~np~V~~~i 119 (473)
-+.++||+++|++|+||++-+.+-- ..+. .++-+++ .....|+..++++... .+.+...-+|+.||++++..
T Consensus 64 Pdp~~mi~~L~~~G~k~~~~~~P~v-~~~~-~~~~y~e---~~~~g~~vk~~~g~~~~~~~w~g~~~~~Dftnp~a~~ww 138 (339)
T cd06603 64 PDPEKMQEKLASKGRKLVTIVDPHI-KRDD-GYYVYKE---AKDKGYLVKNSDGGDFEGWCWPGSSSWPDFLNPEVRDWW 138 (339)
T ss_pred CCHHHHHHHHHHCCCEEEEEecCce-ecCC-CCHHHHH---HHHCCeEEECCCCCEEEEEECCCCcCCccCCChhHHHHH
Confidence 4568999999999999999876543 2200 1222222 2224667766555321 12333446899999999999
Q ss_pred HHHHHHHHH--hcCccEEEEeccc
Q 011993 120 LDSLRHWVV--EYHVDGFRFDLAS 141 (473)
Q Consensus 120 ~~~~~~w~~--~~giDGfR~Daa~ 141 (473)
.+.++..+. ..|+|||=+|...
T Consensus 139 ~~~~~~~~~~~~~g~~g~w~D~~E 162 (339)
T cd06603 139 ASLFSYDKYKGSTENLYIWNDMNE 162 (339)
T ss_pred HHHHHHHhhcccCCCceEEeccCC
Confidence 999998884 3689999999654
No 82
>PRK11052 malQ 4-alpha-glucanotransferase; Provisional
Probab=95.14 E-value=0.099 Score=56.25 Aligned_cols=125 Identities=18% Similarity=0.206 Sum_probs=66.3
Q ss_pred HHHHHHHHHHHHHCCC--EEEEEEecccccCCCCCCCcccc--c----cCCCCccceeecCCCCcccccCCcCCCCCCC-
Q 011993 42 SWEFKEMVKALHGAGI--EVILDVVYNHTNEADDANPYTTS--F----RGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH- 112 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi--~VilD~V~NH~~~~~~~~~~~~~--~----~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n- 112 (473)
.++++++.+.|+++|| .+|-|+.+.= +.++ -.-|... | .-..+|++|...... ++ .|-+|+..
T Consensus 354 ~~Ql~~~~~~A~~~Gm~igL~gDLpvgv-~~ds-aDvWa~~~~F~l~~~~GaPPD~fs~~GQ~-----WG-~P~y~w~~l 425 (695)
T PRK11052 354 DSQFAACWQLSQQLGMPIGLYRDLAVGV-AEGG-AETWCDRELYCLKASVGAPPDILGPLGQN-----WG-LPPMDPHVL 425 (695)
T ss_pred HHHHHHHHHHHHHCCCceeEEEeeeceE-CCCc-HHHhCCHHHhcCCCcCCCCCCcCCccccc-----CC-CcCcCHHHH
Confidence 3668889999999999 5799998743 2211 1233321 1 112335555442110 11 23333311
Q ss_pred -HHHHHHHHHHHHHHHHhcCccEEEEeccccc------ccCC---CCCCC--CCHHHHHHHHhccccCCceEEecC
Q 011993 113 -PVVMELILDSLRHWVVEYHVDGFRFDLASVL------CRGT---DGSPL--NAPPLIRAIAKDAILSRCKIIAEP 176 (473)
Q Consensus 113 -p~V~~~i~~~~~~w~~~~giDGfR~Daa~~l------~~~~---~~~~~--~~~~~~~~~~~~~~~~~~~li~E~ 176 (473)
..=...+++.++.-++ .+|++|||.+-.+ +... .|.|. ...+++..+.-+....++.+|||-
T Consensus 426 ~~~gy~ww~~rlr~~~~--~~g~lRIDH~~Gl~rlW~IP~g~~a~~G~yv~~P~~~ll~~lales~~~~~~vIgED 499 (695)
T PRK11052 426 QARAYQPFIDLLRANMQ--HCGALRIDHVMSLLRLWWIPYGETADQGAYVHYPVDDLLAILALESQRHRCMVIGED 499 (695)
T ss_pred HhcCcHHHHHHHHHHHH--hCCEEEecchhhhheeeecCCCCCCCCCeeEeCCHHHHHHHHHHHHhcCCCCEEEee
Confidence 0011224444554453 6889999977764 3221 25554 234566655444456778899993
No 83
>cd06595 GH31_xylosidase_XylS-like This family represents an uncharacterized glycosyl hydrolase family 31 (GH31) enzyme found in bacteria and eukaryotes that is related to the XylS xylosidase of Sulfolobus solfataricus. Alpha-xylosidases catalyze the release of an alpha-xylose residue from the non-reducing end of alpha-xyloside substrates. Enzymes of the GH31 family possess a wide range of different hydrolytic activities including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein.
Probab=94.98 E-value=0.053 Score=52.34 Aligned_cols=85 Identities=14% Similarity=0.154 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
-+.++||+++|++|+|||+-+.+.. +... ...-+.++... . + .....+...-+|+.||+.++...+.
T Consensus 74 Pdp~~mi~~Lh~~G~k~v~~v~P~~-~~~~-~~~~y~~~~~~---------~-~-~~~~~~~~~~~D~tnp~a~~~w~~~ 140 (292)
T cd06595 74 PDPEKLLQDLHDRGLKVTLNLHPAD-GIRA-HEDQYPEMAKA---------L-G-VDPATEGPILFDLTNPKFMDAYFDN 140 (292)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCCCc-ccCC-CcHHHHHHHHh---------c-C-CCcccCCeEEecCCCHHHHHHHHHH
Confidence 4569999999999999999887753 2100 11111111100 0 0 0000111124689999998877666
Q ss_pred HHHHHHhcCccEEEEecc
Q 011993 123 LRHWVVEYHVDGFRFDLA 140 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa 140 (473)
+..-+.+.|||||=+|..
T Consensus 141 ~~~~~~~~Gidg~W~D~~ 158 (292)
T cd06595 141 VHRPLEKQGVDFWWLDWQ 158 (292)
T ss_pred HHHHHHhcCCcEEEecCC
Confidence 655555899999999953
No 84
>TIGR00217 malQ 4-alpha-glucanotransferase. This enzyme is known as amylomaltase and disproportionating enzyme.
Probab=94.94 E-value=0.18 Score=52.48 Aligned_cols=121 Identities=20% Similarity=0.214 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCC-CCcccccCCcCC------CCCCCH--
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-GQLLNYAGCGNT------LNCNHP-- 113 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~d------ln~~np-- 113 (473)
++++++-+.|+++||++|-|+.+-= +.++ ..-|.. ++.|..+.. |... ..+..|| =+|.||
T Consensus 212 ~Q~~~l~~yA~~~~I~L~gDlpi~v-~~ds-aDvWa~-------~~~F~l~~~~GaP~-~agvpPd~Fs~~GQ~WG~P~y 281 (513)
T TIGR00217 212 SQFQALKRYANDMGIGLYGDLPVFV-AYDS-ADVWAD-------PELFCLRASAGAPK-PAGLGPDYFLEQGQNWGLPPY 281 (513)
T ss_pred HHHHHHHHHHhcCCcEEEEeCccee-CCCc-HHHHhC-------HHHhCCCcccCCCC-CCCCCCCcccccCCCCCCCCc
Confidence 5678888899999999999998743 2211 122221 333333322 2221 1222222 123322
Q ss_pred --HH-H----HHHHHHHHHHHHhcCccEEEEeccccc------ccCC----CCCCCCC--HHHHHHHHhccccCCceEEe
Q 011993 114 --VV-M----ELILDSLRHWVVEYHVDGFRFDLASVL------CRGT----DGSPLNA--PPLIRAIAKDAILSRCKIIA 174 (473)
Q Consensus 114 --~V-~----~~i~~~~~~w~~~~giDGfR~Daa~~l------~~~~----~~~~~~~--~~~~~~~~~~~~~~~~~li~ 174 (473)
+. + ..+++-++.-++ .+|++|||.+-.+ +... .|.|... .+++..+..+...- +.+||
T Consensus 282 ~w~~l~~~gy~ww~~rlr~~~~--~~d~lRIDHf~Gf~r~w~IP~g~~ta~~G~wv~~Pg~~l~~~l~~e~~~~-~~vIa 358 (513)
T TIGR00217 282 DWNVLKARGYEWWIKRLGANMQ--YADILRIDHFRGFVSLWWVPAGESTAFNGAWVHYPGDDFFNILANESKDN-LKIIG 358 (513)
T ss_pred CHHHHHhcCcHHHHHHHHHHHH--hCCeEEecchhhhceeeeecCCCCCCCCCeeEeCCHHHHHHHHHHHcCCC-CcEEe
Confidence 22 1 223444444443 6788999977764 3221 2555443 46777777654333 78899
Q ss_pred cC
Q 011993 175 EP 176 (473)
Q Consensus 175 E~ 176 (473)
|-
T Consensus 359 ED 360 (513)
T TIGR00217 359 ED 360 (513)
T ss_pred ee
Confidence 93
No 85
>cd02875 GH18_chitobiase Chitobiase (also known as di-N-acetylchitobiase) is a lysosomal glycosidase that hydrolyzes the reducing-end N-acetylglucosamine from the chitobiose core of oligosaccharides during the ordered degradation of asparagine-linked glycoproteins in eukaryotes. Chitobiase can only do so if the asparagine that joins the oligosaccharide to protein is previously removed by a glycosylasparaginase. Chitobiase is therefore the final step in the lysosomal degradation of the protein/carbohydrate linkage component of asparagine-linked glycoproteins. The catalytic domain of chitobiase is an eight-stranded alpha/beta barrel fold similar to that of other family 18 glycosyl hydrolases such as hevamine and chitotriosidase.
Probab=94.17 E-value=0.12 Score=51.52 Aligned_cols=54 Identities=17% Similarity=0.337 Sum_probs=43.1
Q ss_pred HHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHH
Q 011993 46 KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRH 125 (473)
Q Consensus 46 ~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~ 125 (473)
.+|+..||++|+||++. +. .+ .-...+|+.|+.+++.+.-
T Consensus 67 ~~~~~~A~~~~v~v~~~------~~----~~------------------------------~~~l~~~~~R~~fi~siv~ 106 (358)
T cd02875 67 DELLCYAHSKGVRLVLK------GD----VP------------------------------LEQISNPTYRTQWIQQKVE 106 (358)
T ss_pred HHHHHHHHHcCCEEEEE------Cc----cC------------------------------HHHcCCHHHHHHHHHHHHH
Confidence 58899999999999964 11 00 0024579999999999999
Q ss_pred HHHhcCccEEEEec
Q 011993 126 WVVEYHVDGFRFDL 139 (473)
Q Consensus 126 w~~~~giDGfR~Da 139 (473)
+++++|.||+-||-
T Consensus 107 ~~~~~gfDGIdIDw 120 (358)
T cd02875 107 LAKSQFMDGINIDI 120 (358)
T ss_pred HHHHhCCCeEEEcc
Confidence 99999999999994
No 86
>COG3589 Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=0.063 Score=51.24 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
..-|++|++.||+.||+||+|+-+.-..
T Consensus 48 ~~~~~ell~~Anklg~~vivDvnPsil~ 75 (360)
T COG3589 48 FHRFKELLKEANKLGLRVIVDVNPSILK 75 (360)
T ss_pred HHHHHHHHHHHHhcCcEEEEEcCHHHHh
Confidence 4569999999999999999999655433
No 87
>cd02871 GH18_chitinase_D-like GH18 domain of Chitinase D (ChiD). ChiD, a chitinase found in Bacillus circulans, hydrolyzes the 1,4-beta-linkages of N-acetylglucosamine in chitin and chitodextrins. The domain architecture of ChiD includes a catalytic glycosyl hydrolase family 18 (GH18) domain, a chitin-binding domain, and a fibronectin type III domain. The chitin-binding and fibronectin type III domains are located either N-terminal or C-terminal to the catalytic domain. This family includes exochitinase Chi36 from Bacillus cereus.
Probab=93.73 E-value=0.3 Score=47.69 Aligned_cols=60 Identities=30% Similarity=0.495 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
.+++++.|++||++|+|||+-+ +. .... ....++.-++.+++
T Consensus 59 ~~~~~~~i~~~q~~G~KVllSi-----GG--~~~~-------------------------------~~~~~~~~~~~fa~ 100 (312)
T cd02871 59 PAEFKADIKALQAKGKKVLISI-----GG--ANGH-------------------------------VDLNHTAQEDNFVD 100 (312)
T ss_pred hHHHHHHHHHHHHCCCEEEEEE-----eC--CCCc-------------------------------cccCCHHHHHHHHH
Confidence 3789999999999999999876 22 0000 01345788889999
Q ss_pred HHHHHHHhcCccEEEEec
Q 011993 122 SLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~Da 139 (473)
.+..+++++|+|||=||-
T Consensus 101 sl~~~~~~~g~DGiDiD~ 118 (312)
T cd02871 101 SIVAIIKEYGFDGLDIDL 118 (312)
T ss_pred HHHHHHHHhCCCeEEEec
Confidence 999999999999999994
No 88
>cd06601 GH31_lyase_GLase GLases (alpha-1,4-glucan lyases) are glycosyl hydrolase family 31 (GH31) enzymes that degrade alpha-1,4-glucans and maltooligosaccharides via a nonhydrolytic pathway to yield 1,5-D-anhydrofructose from the nonreducing end. GLases cleave the bond between C1 and O1 of the nonreducing sugar residue of alpha-glucans to generate a monosaccharide product with a double bond between C1 and C2. This family corresponds to subgroup 2 in the Ernst et al classification of GH31 enzymes.
Probab=93.10 E-value=0.3 Score=47.98 Aligned_cols=70 Identities=16% Similarity=0.126 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
-+.++||+++|++|++||+-+.+-= .. ...| .+.+.-.||.||++++...+.
T Consensus 64 Pdp~~mv~~L~~~G~klv~~i~P~i-~~---g~~~------------------------~~~~~~pDftnp~ar~wW~~~ 115 (332)
T cd06601 64 PNPKEMFDNLHNKGLKCSTNITPVI-SY---GGGL------------------------GSPGLYPDLGRPDVREWWGNQ 115 (332)
T ss_pred CCHHHHHHHHHHCCCeEEEEecCce-ec---CccC------------------------CCCceeeCCCCHHHHHHHHHH
Confidence 3457899999999999988764321 11 0000 000122578899999999888
Q ss_pred HHHHHHhcCccEEEEeccc
Q 011993 123 LRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa~ 141 (473)
.+.+. +.|||||=+|+..
T Consensus 116 ~~~l~-~~Gv~~~W~DmnE 133 (332)
T cd06601 116 YKYLF-DIGLEFVWQDMTT 133 (332)
T ss_pred HHHHH-hCCCceeecCCCC
Confidence 88888 7899999999654
No 89
>TIGR01370 cysRS possible cysteinyl-tRNA synthetase, Methanococcus type. Assignment of this protein family as cysteinyl-tRNA synthetase is controversial, supported by PubMed:11333988 but challenged by PubMed:14679218. Members of this family from Deinococcus radiodurans (bacterial) and Methanococcus jannaschii (archaeal), species lacking a conventional cysteinyl-tRNA synthetase (Cys--tRNA ligase), have been indicated to be a novel form of that enzyme, perhaps distantly related to class I tRNA ligases. The member from Thermotoga maritima is presumed to be a second isozyme of cysteinyl-tRNA synthetase. A number of homologous but more distantly related proteins are annotated as alpha-1,4 polygalactosaminidases.
Probab=92.92 E-value=0.27 Score=47.64 Aligned_cols=134 Identities=14% Similarity=0.113 Sum_probs=71.7
Q ss_pred cccCCCCCCCCCCCCCCchHHH--H-HHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc
Q 011993 23 NFFSPMSRYAAGGGGPLKASWE--F-KEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL 99 (473)
Q Consensus 23 d~~~vdp~~Gt~~~~~~~~~ed--l-~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (473)
|...|||..+.. ++ | .+=|+++|+.|-+|+.=+-+.-.-. ..++++.-....++.|.... ..
T Consensus 66 d~vVID~~~~g~--------~~~~fs~~~i~~Lk~~g~~viaYlSvGe~E~---~R~y~~~~~~~~~~~~l~~~----n~ 130 (315)
T TIGR01370 66 ELVVIDYSKDGT--------EDGTYSPEEIVRAAAAGRWPIAYLSIGAAED---YRFYWQKGWKVNAPAWLGNE----DP 130 (315)
T ss_pred CEEEEccccccC--------cccCCCHHHHHHHHhCCcEEEEEEEchhccc---cchhhhhhhhcCCHHHhCCC----CC
Confidence 556888887531 11 1 3446677889988876553333222 22322110000012221111 11
Q ss_pred cccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCC-CCC--CC---CCHHHHHHHHh--ccccCCce
Q 011993 100 NYAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGT-DGS--PL---NAPPLIRAIAK--DAILSRCK 171 (473)
Q Consensus 100 ~~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~-~~~--~~---~~~~~~~~~~~--~~~~~~~~ 171 (473)
+|.+ .-.+++++|+.++.|.+-+...+ +.|+|||-+|.+.....-. .+. .. ....++++|.. ...+|++.
T Consensus 131 ~W~g-~~~vd~~~~~W~~il~~rl~~l~-~kGfDGvfLD~lDsy~~~~~~~~~~~~~~~~m~~~i~~Ia~~ar~~~P~~~ 208 (315)
T TIGR01370 131 DWPG-NYDVKYWDPEWKAIAFSYLDRVI-AQGFDGVYLDLIDAFEYWAENGDNRPGAAAEMIAFVCEIAAYARAQNPQFV 208 (315)
T ss_pred CCCC-ceeEecccHHHHHHHHHHHHHHH-HcCCCeEeeccchhhhhhcccCCcchhhHHHHHHHHHHHHHHHHHHCCCEE
Confidence 1111 23578999999999999888777 7899999999666543211 011 11 12346666643 23568877
Q ss_pred EE
Q 011993 172 II 173 (473)
Q Consensus 172 li 173 (473)
+|
T Consensus 209 II 210 (315)
T TIGR01370 209 II 210 (315)
T ss_pred EE
Confidence 76
No 90
>COG1640 MalQ 4-alpha-glucanotransferase [Carbohydrate transport and metabolism]
Probab=92.88 E-value=1 Score=46.51 Aligned_cols=123 Identities=20% Similarity=0.309 Sum_probs=64.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCC-CCccc-ccCCc--CCCCCCCHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-GQLLN-YAGCG--NTLNCNHPVVMEL 118 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-~~~~~--~dln~~np~V~~~ 118 (473)
+++.++=..|+++||.+|-|+.+.-... + -.-|. ++++|..+.+ |.... |...+ -.+-.-||++..
T Consensus 210 ~Q~~~~k~~A~~~~I~i~gDLpv~va~~-s-aDvW~-------~~~~f~~~~~~GaPPD~f~~~GQ~Wg~p~yn~~~l~- 279 (520)
T COG1640 210 RQLAALKRYANDMGIGIIGDLPVGVAQD-S-ADVWA-------NPEYFCLDESAGAPPDVFNAQGQDWGLPPYNPEALK- 279 (520)
T ss_pred HHHHHHHHHHHhcCceEeecccceecCC-c-hhhhc-------CcccccccccCCCCCCcccccccccCCCCCCHHHHH-
Confidence 5566777788899999999998875332 1 12222 1455555433 22111 11100 001122345443
Q ss_pred HHHHHHHHHHh-----cCccEEEEeccccccc----------CCCCCCCCCH-HHHHHHHhccccCCceEEecC
Q 011993 119 ILDSLRHWVVE-----YHVDGFRFDLASVLCR----------GTDGSPLNAP-PLIRAIAKDAILSRCKIIAEP 176 (473)
Q Consensus 119 i~~~~~~w~~~-----~giDGfR~Daa~~l~~----------~~~~~~~~~~-~~~~~~~~~~~~~~~~li~E~ 176 (473)
.+-..+|++. .-+|++|||.+..+.+ ..++.|.... +.+..+.-++.+..+.+|||-
T Consensus 280 -~~~y~wwierlr~~~~~~~~lRIDHf~Gl~rlW~ip~g~~~a~g~~~~~~~~~~l~~l~le~~~~~~~vIgED 352 (520)
T COG1640 280 -KDGYDWWIERLRANLKLYGILRIDHFRGLFRLWEIPYGEDTAQGGYWRYPPGKLLFILALEALRANMLVIGED 352 (520)
T ss_pred -HcccHHHHHHHHHHHHhcCeeeeeeecchhhheeeeCCCccccCCcccCCHHHHHHHHHHHhhhcCCcEEecc
Confidence 4455666643 2578999997766521 1234444333 334444444445578899993
No 91
>cd06545 GH18_3CO4_chitinase The Bacteroides thetaiotaomicron protein represented by pdb structure 3CO4 is an uncharacterized bacterial member of the family 18 glycosyl hydrolases with homologs found in Flavobacterium, Stigmatella, and Pseudomonas.
Probab=92.84 E-value=0.4 Score=45.21 Aligned_cols=83 Identities=20% Similarity=0.322 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
..++..++++||++|++|++=+- ++... .+ .. -..+|+.|+.+++
T Consensus 45 ~~~~~~~~~~~~~~~~kvl~sig-g~~~~------~~--------------------------~~--~~~~~~~r~~fi~ 89 (253)
T cd06545 45 RSELNSVVNAAHAHNVKILISLA-GGSPP------EF--------------------------TA--ALNDPAKRKALVD 89 (253)
T ss_pred HHHHHHHHHHHHhCCCEEEEEEc-CCCCC------cc--------------------------hh--hhcCHHHHHHHHH
Confidence 36789999999999999998652 11110 00 00 2346899999999
Q ss_pred HHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 122 SLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
.+..+++++|+||+-||-=..-.. ......+++++++.
T Consensus 90 ~lv~~~~~~~~DGIdiDwE~~~~~-----~~~~~~fv~~Lr~~ 127 (253)
T cd06545 90 KIINYVVSYNLDGIDVDLEGPDVT-----FGDYLVFIRALYAA 127 (253)
T ss_pred HHHHHHHHhCCCceeEEeeccCcc-----HhHHHHHHHHHHHH
Confidence 999999999999999994221100 12334577777764
No 92
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=92.47 E-value=0.17 Score=49.91 Aligned_cols=30 Identities=27% Similarity=0.291 Sum_probs=23.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.-.+.|++|++.||++||+||+|+-+.-..
T Consensus 44 ~~~~~~~~l~~~a~~~~~~v~~Disp~~l~ 73 (357)
T PF05913_consen 44 DYLERLKELLKLAKELGMEVIADISPKVLK 73 (357)
T ss_dssp -HHHHHHHHHHHHHHCT-EEEEEE-CCHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEECCHHHHH
Confidence 446899999999999999999999655544
No 93
>KOG1065 consensus Maltase glucoamylase and related hydrolases, glycosyl hydrolase family 31 [Carbohydrate transport and metabolism]
Probab=92.35 E-value=0.45 Score=51.08 Aligned_cols=92 Identities=23% Similarity=0.331 Sum_probs=59.1
Q ss_pred HHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc---ccc-CCcCCCCCCCHHHHHHHH
Q 011993 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL---NYA-GCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 45 l~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~-~~~~dln~~np~V~~~i~ 120 (473)
++.+++.+|++|+|+|+=+-++--. +..+. .++.......++....|... ..+ +...=+|+.||.+.....
T Consensus 353 ~~~fv~~Lh~~G~kyvliidP~is~----~~~y~-~y~~g~~~~v~I~~~~g~~~~lg~vwP~~~~fpDftnp~~~~Ww~ 427 (805)
T KOG1065|consen 353 LKDFVDDLHARGFKYVLIIDPFIST----NSSYG-PYDRGVAKDVLIKNREGSPKMLGEVWPGSTAFPDFTNPAVVEWWL 427 (805)
T ss_pred hHHHHHHHHhCCCeEEEEeCCcccc----Cccch-hhhhhhhhceeeecccCchhhhcccCCCcccccccCCchHHHHHH
Confidence 8999999999999998766543311 12211 22222223444443333321 111 112336899999999999
Q ss_pred HHHHHHHHhcCccEEEEeccc
Q 011993 121 DSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.++..-+++++|||-+|+-.
T Consensus 428 ~~~~~fh~~vp~dg~wiDmnE 448 (805)
T KOG1065|consen 428 DELKRFHDEVPFDGFWIDMNE 448 (805)
T ss_pred HHHHhhcccCCccceEEECCC
Confidence 999988888999999999744
No 94
>PF02446 Glyco_hydro_77: 4-alpha-glucanotransferase; InterPro: IPR003385 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. The enzymes in this entry (2.4.1.25 from EC) belong to the glycoside hydrolase family 77 GH77 from CAZY, and transfer a segment of a (1,4)-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or (1,4)-alpha-D-glucan []. They belong to the disproportionating family of enzymes.; GO: 0004134 4-alpha-glucanotransferase activity, 0005975 carbohydrate metabolic process; PDB: 1TZ7_A 2X1I_A 2OWX_A 2OWW_A 1FP9_A 1CWY_A 1ESW_A 1FP8_A 2OWC_A 1X1N_A.
Probab=92.05 E-value=0.27 Score=51.21 Aligned_cols=122 Identities=22% Similarity=0.271 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcccc--cc----CCCCccceeecCCCCcccccCCcCCCCCCCHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTS--FR----GIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V 115 (473)
-++++++.+.|+++||.||-|+.+-= +.++ -.-|... |. -..+|++|... |+ + +| .|-+|+ ..+
T Consensus 191 ~~Q~~~~~~~A~~~gI~L~gDlpigv-~~ds-aDvW~~~~lF~~~~~aGaPPD~fs~~--GQ--~-WG-~P~y~w--~~l 260 (496)
T PF02446_consen 191 FKQWKAAKEYAREMGIGLIGDLPIGV-SPDS-ADVWANPELFLLDASAGAPPDYFSPT--GQ--N-WG-NPPYNW--DAL 260 (496)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEEESS---SSS-HHHHH-GGGB-B-EEEEE-SSSSSSS---E--E-EE-EE-B-H--HHH
T ss_pred HHHHHHHHHHHHHCCCEEEEeccceE-CCCc-HHHHhCHHHHhCcCeeCCCCCCCCcc--cc--c-CC-CCCcCH--HHH
Confidence 36899999999999999999998643 3211 1122210 10 01223333221 11 0 11 244443 112
Q ss_pred H----HHHHHHHHHHHHhcCccEEEEecccccc------c-C---CCCCCCCC--HHHHHHHHhccccCCceEEecC
Q 011993 116 M----ELILDSLRHWVVEYHVDGFRFDLASVLC------R-G---TDGSPLNA--PPLIRAIAKDAILSRCKIIAEP 176 (473)
Q Consensus 116 ~----~~i~~~~~~w~~~~giDGfR~Daa~~l~------~-~---~~~~~~~~--~~~~~~~~~~~~~~~~~li~E~ 176 (473)
+ ..+++-+++-+ ..+|++|||.+..+. . . ..|.|... .+++..+..+... ++.+|||-
T Consensus 261 ~~~gy~ww~~rl~~~~--~~~d~lRIDH~~Gf~r~W~IP~~~~~a~~G~~~~~p~~~ll~~l~~e~~r-~~~vigED 334 (496)
T PF02446_consen 261 KEDGYRWWIDRLRANM--RLFDALRIDHFRGFFRYWWIPAGGETAIDGAWVRYPGEDLLAILALESGR-DCLVIGED 334 (496)
T ss_dssp HHTTTHHHHHHHHHHH--CC-SEEEEETGGGGTEEEEEETT-SSSTT-EEEE--HHHHHHHHHHHHS--S-EEEE--
T ss_pred HHcCCHHHHHHHHHHH--HhCCchHHHHHHHHHheeEecCCCCCCCCceeecchHHHHHHHHHHHcCC-CCcEEEee
Confidence 2 22333343333 378899999877752 2 1 12333222 3566666654322 78899993
No 95
>cd06570 GH20_chitobiase-like_1 A functionally uncharacterized subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the chitobiase of Serratia marcescens, a beta-N-1,4-acetylhexosaminidase that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This subgroup lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=89.30 E-value=0.89 Score=44.24 Aligned_cols=78 Identities=12% Similarity=0.155 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCCCCc-ccccCCcCCCCCCCHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dln~~np~V~~~i 119 (473)
-+|+++||+-|.+|||.||-.+ +|.|+.. |...+.. .-........ ..+....+.||-.+|++.+++
T Consensus 67 ~~di~elv~yA~~rgI~vIPEId~PGH~~a------~~~~ype-----l~~~~~~~~~~~~~~~~~~~l~~~~p~t~~f~ 135 (311)
T cd06570 67 QEQIREVVAYARDRGIRVVPEIDVPGHASA------IAVAYPE-----LASGPGPYVIERGWGVFEPLLDPTNEETYTFL 135 (311)
T ss_pred HHHHHHHHHHHHHcCCEEEEeecCccchHH------HHHhCHH-----hccCCCccccccccccCCCccCCCChhHHHHH
Confidence 3999999999999999999887 5677664 3332211 1000000000 011111245899999999999
Q ss_pred HHHHHHHHHhc
Q 011993 120 LDSLRHWVVEY 130 (473)
Q Consensus 120 ~~~~~~w~~~~ 130 (473)
.+++.-.++-+
T Consensus 136 ~~l~~E~~~lF 146 (311)
T cd06570 136 DNLFGEMAELF 146 (311)
T ss_pred HHHHHHHHHhC
Confidence 99999999544
No 96
>cd02742 GH20_hexosaminidase Beta-N-acetylhexosaminidases of glycosyl hydrolase family 20 (GH20) catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. These enzymes are broadly distributed in microorganisms, plants and animals, and play roles in various key physiological and pathological processes. These processes include cell structural integrity, energy storage, cellular signaling, fertilization, pathogen defense, viral penetration, the development of carcinomas, inflammatory events and lysosomal storage disorders. The GH20 enzymes include the eukaryotic beta-N-acetylhexosaminidases A and B, the bacterial chitobiases, dispersin B, and lacto-N-biosidase. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by the solvent or the enzyme, but by the substrate itself.
Probab=87.48 E-value=0.93 Score=44.02 Aligned_cols=76 Identities=20% Similarity=0.344 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
-+|+++||+-|.+|||.||-.+ +|.|+.. |...+.....+.+ .+ ..+......||..+|++.+++.
T Consensus 71 ~~di~elv~yA~~rgI~viPEiD~PGH~~a------~~~~~p~l~~~~~-----~~--~~~~~~~~~l~~~~~~t~~fl~ 137 (303)
T cd02742 71 YAQLKDIIEYAAARGIEVIPEIDMPGHSTA------FVKSFPKLLTECY-----AG--LKLRDVFDPLDPTLPKGYDFLD 137 (303)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccchHHHHH------HHHhCHHhccCcc-----cc--CCCCCCCCccCCCCccHHHHHH
Confidence 3999999999999999999887 5788765 3322210000000 00 0011112468999999999999
Q ss_pred HHHHHHHHhc
Q 011993 121 DSLRHWVVEY 130 (473)
Q Consensus 121 ~~~~~w~~~~ 130 (473)
+++...++-+
T Consensus 138 ~l~~e~~~lf 147 (303)
T cd02742 138 DLFGEIAELF 147 (303)
T ss_pred HHHHHHHHhC
Confidence 9999999533
No 97
>cd06568 GH20_SpHex_like A subgroup of the Glycosyl hydrolase family 20 (GH20) catalytic domain found in proteins similar to the N-acetylhexosaminidase from Streptomyces plicatus (SpHex). SpHex catalyzes the hydrolysis of N-acetyl-beta-hexosaminides. An Asp residue within the active site plays a critical role in substrate-assisted catalysis by orienting the 2-acetamido group and stabilizing the transition state. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself. Proteins belonging to this subgroup lack the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases.
Probab=86.10 E-value=2.2 Score=41.95 Aligned_cols=76 Identities=16% Similarity=0.206 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCC-CCcccccCCcCCCCCCCHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGT-GQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~dln~~np~V~~~i 119 (473)
.+|+++||+-|.+|||.||-.+ +|.|+.. |+..+. +.-..... ..+.........||..+|++.+++
T Consensus 74 ~~di~elv~yA~~rgI~vIPEiD~PGH~~a------~~~~~p-----~l~~~~~~~~~~~~~~~~~~~l~~~~~~t~~fl 142 (329)
T cd06568 74 QEDYKDIVAYAAERHITVVPEIDMPGHTNA------ALAAYP-----ELNCDGKAKPLYTGIEVGFSSLDVDKPTTYEFV 142 (329)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCcHHHHH------HHHhCh-----hhccCCCCCccccccCCCCcccCCCCHHHHHHH
Confidence 4999999999999999999887 4677654 222211 10000000 000011111346899999999999
Q ss_pred HHHHHHHHH
Q 011993 120 LDSLRHWVV 128 (473)
Q Consensus 120 ~~~~~~w~~ 128 (473)
.+++...++
T Consensus 143 ~~v~~E~~~ 151 (329)
T cd06568 143 DDVFRELAA 151 (329)
T ss_pred HHHHHHHHH
Confidence 999999984
No 98
>cd06563 GH20_chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. This GH20 domain family includes an N-acetylglucosamidase (GlcNAcase A) from Pseudoalteromonas piscicida and an N-acetylhexosaminidase (SpHex) from Streptomyces plicatus. SpHex lacks the C-terminal PKD (polycystic kidney disease I)-like domain found in the chitobiases. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.85 E-value=2.4 Score=42.16 Aligned_cols=78 Identities=19% Similarity=0.218 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCCCCc-ccccCCcCCCCCCCHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQL-LNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~dln~~np~V~~~i 119 (473)
-+|+++||+-|.+|||.||-.+ +|.|+.. |++.+ ++.-.......+ .........||-.+|++.+++
T Consensus 85 ~~di~eiv~yA~~rgI~VIPEID~PGH~~a------~l~~~-----pel~~~~~~~~~~~~~~~~~~~L~~~~~~t~~f~ 153 (357)
T cd06563 85 QEEIREIVAYAAERGITVIPEIDMPGHALA------ALAAY-----PELGCTGGPGSVVSVQGVVSNVLCPGKPETYTFL 153 (357)
T ss_pred HHHHHHHHHHHHHcCCEEEEecCCchhHHH------HHHhC-----ccccCCCCCCccccccCcCCCccCCCChhHHHHH
Confidence 4999999999999999999887 5677654 22222 111100000000 001112345899999999999
Q ss_pred HHHHHHHHHhc
Q 011993 120 LDSLRHWVVEY 130 (473)
Q Consensus 120 ~~~~~~w~~~~ 130 (473)
.+++...++-+
T Consensus 154 ~~ll~E~~~lF 164 (357)
T cd06563 154 EDVLDEVAELF 164 (357)
T ss_pred HHHHHHHHHhC
Confidence 99999999544
No 99
>cd06564 GH20_DspB_LnbB-like Glycosyl hydrolase family 20 (GH20) catalytic domain of dispersin B (DspB), lacto-N-biosidase (LnbB) and related proteins. Dispersin B is a soluble beta-N-acetylglucosamidase found in bacteria that hydrolyzes the beta-1,6-linkages of PGA (poly-beta-(1,6)-N-acetylglucosamine), a major component of the extracellular polysaccharide matrix. Lacto-N-biosidase hydrolyzes lacto-N-biose (LNB) type I oligosaccharides at the nonreducing terminus to produce lacto-N-biose as part of the GNB/LNB (galacto-N-biose/lacto-N-biose I) degradation pathway. The lacto-N-biosidase from Bifidobacterium bifidum has this GH20 domain, a carbohydrate binding module 32, and a bacterial immunoglobulin-like domain 2, as well as a YSIRK signal peptide and a G5 membrane anchor at the N and C termini, respectively. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=85.18 E-value=1.5 Score=42.97 Aligned_cols=74 Identities=15% Similarity=0.275 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
-+|+++||+-|.+|||.||-.+ +|.|+.. |.+.+. +.-...+ ........||..+|++.+++.
T Consensus 81 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a------~~~~~p-----el~~~~~-----~~~~~~~~l~~~~~~t~~f~~ 144 (326)
T cd06564 81 KEEFKELIAYAKDRGVNIIPEIDSPGHSLA------FTKAMP-----ELGLKNP-----FSKYDKDTLDISNPEAVKFVK 144 (326)
T ss_pred HHHHHHHHHHHHHcCCeEeccCCCcHHHHH------HHHhhH-----HhcCCCc-----ccCCCcccccCCCHHHHHHHH
Confidence 4999999999999999999887 5777665 332221 1100000 011223468999999999999
Q ss_pred HHHHHHHHhcC
Q 011993 121 DSLRHWVVEYH 131 (473)
Q Consensus 121 ~~~~~w~~~~g 131 (473)
+++...++-+.
T Consensus 145 ~l~~E~~~~f~ 155 (326)
T cd06564 145 ALFDEYLDGFN 155 (326)
T ss_pred HHHHHHHHhcC
Confidence 99999995454
No 100
>cd06589 GH31 The enzymes of glycosyl hydrolase family 31 (GH31) occur in prokaryotes, eukaryotes, and archaea with a wide range of hydrolytic activities, including alpha-glucosidase (glucoamylase and sucrase-isomaltase), alpha-xylosidase, 6-alpha-glucosyltransferase, 3-alpha-isomaltosyltransferase and alpha-1,4-glucan lyase. All GH31 enzymes cleave a terminal carbohydrate moiety from a substrate that varies considerably in size, depending on the enzyme, and may be either a starch or a glycoprotein. In most cases, the pyranose moiety recognized in subsite -1 of the substrate binding site is an alpha-D-glucose, though some GH31 family members show a preference for alpha-D-xylose. Several GH31 enzymes can accommodate both glucose and xylose and different levels of discrimination between the two have been observed. Most characterized GH31 enzymes are alpha-glucosidases. In mammals, GH31 members with alpha-glucosidase activity are implicated in at least three distinct biological processes
Probab=85.15 E-value=1.7 Score=41.33 Aligned_cols=53 Identities=25% Similarity=0.362 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
-+.++||+.+|++|++|++-+.+ .|++...+.
T Consensus 66 pdp~~~i~~l~~~g~~~~~~~~P------------------------------------------------~v~~w~~~~ 97 (265)
T cd06589 66 PNPKSMIDELHDNGVKLVLWIDP------------------------------------------------YIREWWAEV 97 (265)
T ss_pred CCHHHHHHHHHHCCCEEEEEeCh------------------------------------------------hHHHHHHHH
Confidence 45689999999999999996522 125556666
Q ss_pred HHHHHHhcCccEEEEeccccc
Q 011993 123 LRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa~~l 143 (473)
++..+.+.|||||=+|.....
T Consensus 98 ~~~~~~~~Gvdg~w~D~~E~~ 118 (265)
T cd06589 98 VKKLLVSLGVDGFWTDMGEPS 118 (265)
T ss_pred HHHhhccCCCCEEeccCCCCC
Confidence 666544899999999976654
No 101
>cd02874 GH18_CFLE_spore_hydrolase Cortical fragment-lytic enzyme (CFLE) is a peptidoglycan hydrolase involved in bacterial endospore germination. CFLE is expressed as an inactive preprotein (called SleB) in the forespore compartment of sporulating cells. SleB translocates across the forespore inner membrane and is deposited as a mature enzyme in the cortex layer of the spore. As part of a sensory mechanism capable of initiating germination, CFLE degrades a spore-specific peptidoglycan constituent called muramic-acid delta-lactam that comprises the outer cortex. CFLE has a C-terminal glycosyl hydrolase family 18 (GH18) catalytic domain as well as two N-terminal LysM peptidoglycan-binding domains. In addition to SleB, this family includes YaaH, YdhD, and YvbX from Bacillus subtilis.
Probab=84.25 E-value=2.1 Score=41.75 Aligned_cols=86 Identities=15% Similarity=0.238 Sum_probs=54.1
Q ss_pred HHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHH
Q 011993 45 FKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLR 124 (473)
Q Consensus 45 l~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~ 124 (473)
..++++.||++|+||++=+- +..+. + + + .. ...--..+|+.|+.+++.+.
T Consensus 47 ~~~~~~~a~~~~~kv~~~i~-~~~~~----~--~---~----~~----------------~~~~~l~~~~~r~~fi~~iv 96 (313)
T cd02874 47 DERLIEAAKRRGVKPLLVIT-NLTNG----N--F---D----SE----------------LAHAVLSNPEARQRLINNIL 96 (313)
T ss_pred CHHHHHHHHHCCCeEEEEEe-cCCCC----C--C---C----HH----------------HHHHHhcCHHHHHHHHHHHH
Confidence 46899999999999997652 11110 0 0 0 00 00012446899999999999
Q ss_pred HHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 125 HWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 125 ~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
.+++++|+||+-||--. +..+ .......++++++..
T Consensus 97 ~~l~~~~~DGidiDwE~-~~~~---d~~~~~~fl~~lr~~ 132 (313)
T cd02874 97 ALAKKYGYDGVNIDFEN-VPPE---DREAYTQFLRELSDR 132 (313)
T ss_pred HHHHHhCCCcEEEeccc-CCHH---HHHHHHHHHHHHHHH
Confidence 99989999999999532 2111 112345577777764
No 102
>PF00728 Glyco_hydro_20: Glycosyl hydrolase family 20, catalytic domain; InterPro: IPR015883 Glycoside hydrolase family 20 GH20 from CAZY comprises enzymes with several known activities; beta-hexosaminidase (3.2.1.52 from EC); lacto-N-biosidase (3.2.1.140 from EC). Carbonyl oxygen of the C-2 acetamido group of the substrate acts as the catalytic nucleophile/base in this family of enzymes. In the brain and other tissues, beta-hexosaminidase A degrades GM2 gangliosides; specifically, the enzyme hydrolyses terminal non-reducing N-acetyl-D-hexosamine residues in N-acetyl-beta-D-hexosaminides. There are 3 forms of beta-hexosaminidase: hexosaminidase A is a trimer, with one alpha, one beta-A and one beta-B chain; hexosaminidase B is a tetramer of two beta-A and two beta-B chains; and hexosaminidase S is a homodimer of alpha chains. The two beta chains are derived from the cleavage of a precursor. Mutations in the beta-chain lead to Sandhoff disease, a lysosomal storage disorder characterised by accumulation of GM2 ganglioside [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3RPM_A 1C7T_A 1QBA_A 1QBB_A 1C7S_A 3RCN_A 2YL8_A 2YL6_A 2YLL_A 2YL5_C ....
Probab=83.71 E-value=2.4 Score=42.02 Aligned_cols=77 Identities=18% Similarity=0.270 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCcccccc---CC---CCccceeecCCCCcccccCCcCCCCCCCHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFR---GI---DNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~dln~~np~V 115 (473)
+|+++||+.|++|||+||-.+ +|.|++. |+.... .. ....+.... ........||..+|++
T Consensus 73 ~di~~lv~yA~~~gI~VIPeid~PGH~~~------~l~~~p~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~~~~t 140 (351)
T PF00728_consen 73 EDIRELVAYAKERGIEVIPEIDTPGHAEA------WLKAYPELGCSAWPEDKSWPNST------CWYPDNGVLDPSNPET 140 (351)
T ss_dssp HHHHHHHHHHHHTT-EEEEEEEESSS-HH------HHHHHHHHCCCHTTCSSSCEEEE------TTSEEEEEE-TTSHHH
T ss_pred HHHHHHHHHHHHcCCceeeeccCchHHHH------HHHhCchhhcccccccccccccc------ccCCCcccCCCCcHHH
Confidence 999999999999999999987 5788775 332211 00 001111110 0011123589999999
Q ss_pred HHHHHHHHHHHHHhcC
Q 011993 116 MELILDSLRHWVVEYH 131 (473)
Q Consensus 116 ~~~i~~~~~~w~~~~g 131 (473)
.+++.+++...++-+.
T Consensus 141 ~~~~~~l~~e~~~~f~ 156 (351)
T PF00728_consen 141 YEFLKDLLDEVADLFP 156 (351)
T ss_dssp HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhCC
Confidence 9999999999996556
No 103
>cd06562 GH20_HexA_HexB-like Beta-N-acetylhexosaminidases catalyze the removal of beta-1,4-linked N-acetyl-D-hexosamine residues from the non-reducing ends of N-acetyl-beta-D-hexosaminides including N-acetylglucosides and N-acetylgalactosides. The hexA and hexB genes encode the alpha- and beta-subunits of the two major beta-N-acetylhexosaminidase isoenzymes, N-acetyl-beta-D-hexosaminidase A (HexA) and beta-N-acetylhexosaminidase B (HexB). Both the alpha and the beta catalytic subunits have a TIM-barrel fold and belong to the glycosyl hydrolase family 20 (GH20). The HexA enzyme is a heterodimer containing one alpha and one beta subunit while the HexB enzyme is a homodimer containing two beta-subunits. Hexosaminidase mutations cause an inability to properly hydrolyze certain sphingolipids which accumulate in lysosomes within the brain, resulting in the lipid storage disorders Tay-Sachs and Sandhoff. Mutations in the alpha subunit cause in a deficiency in the HexA enzyme and result in
Probab=83.56 E-value=2.6 Score=41.74 Aligned_cols=78 Identities=15% Similarity=0.140 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccC--CCCccceeecCCCCcccccCCcCCCCCCCHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRG--IDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMEL 118 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~ 118 (473)
-+|+++||+-|.+|||.||-.+ +|.|+.. |...... ...... +. ... .......||..+|++.++
T Consensus 69 ~~di~eiv~yA~~rgI~vIPEID~PGH~~a------~~~~~p~l~~~~~~~--~~-~~~---~~~~~~~L~~~~~~t~~f 136 (348)
T cd06562 69 PEDVKEIVEYARLRGIRVIPEIDTPGHTGS------WGQGYPELLTGCYAV--WR-KYC---PEPPCGQLNPTNPKTYDF 136 (348)
T ss_pred HHHHHHHHHHHHHcCCEEEEeccCchhhHH------HHHhChhhhCCCCcc--cc-ccc---cCCCCccccCCChhHHHH
Confidence 3999999999999999999988 5778765 2222110 000000 00 000 011123589999999999
Q ss_pred HHHHHHHHHHhcC
Q 011993 119 ILDSLRHWVVEYH 131 (473)
Q Consensus 119 i~~~~~~w~~~~g 131 (473)
+.+++...++-+.
T Consensus 137 l~~vl~E~~~lF~ 149 (348)
T cd06562 137 LKTLFKEVSELFP 149 (348)
T ss_pred HHHHHHHHHHhcC
Confidence 9999999996454
No 104
>COG2342 Predicted extracellular endo alpha-1,4 polygalactosaminidase or related polysaccharide hydrolase [Carbohydrate transport and metabolism]
Probab=83.50 E-value=7.3 Score=36.58 Aligned_cols=104 Identities=11% Similarity=0.076 Sum_probs=60.8
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 105 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (473)
.|||++-.+ .+..-..|+++.+ .+.|.++|.=+-+.-... -..|.+.......|+|--..+.. ++..
T Consensus 48 VVDps~~g~-~~~~~~~eelr~~----~~gg~~pIAYlsIg~ae~---yR~Ywd~~w~~~~p~wLg~edP~-----W~Gn 114 (300)
T COG2342 48 VVDPSYCGP-FNTPWTIEELRTK----ADGGVKPIAYLSIGEAES---YRFYWDKYWLTGRPDWLGEEDPE-----WPGN 114 (300)
T ss_pred EEeccccCC-CCCcCcHHHHHHH----hcCCeeEEEEEechhhhh---hhhHhhhhhhcCCcccccCCCCC-----CCCC
Confidence 677743331 2333335666665 455677777776655543 33332221112224443331111 1112
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 106 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 106 ~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
-...|..|+=++.+.+.+...+ +.|+||.-+|.+...
T Consensus 115 y~VkYW~~eWkdii~~~l~rL~-d~GfdGvyLD~VD~y 151 (300)
T COG2342 115 YAVKYWEPEWKDIIRSYLDRLI-DQGFDGVYLDVVDAY 151 (300)
T ss_pred ceeeccCHHHHHHHHHHHHHHH-HccCceEEEeeechH
Confidence 3467888999999998999988 899999999977654
No 105
>cd00598 GH18_chitinase-like The GH18 (glycosyl hydrolase, family 18) type II chitinases hydrolyze chitin, an abundant polymer of beta-1,4-linked N-acetylglucosamine (GlcNAc) which is a major component of the cell wall of fungi and the exoskeleton of arthropods. Chitinases have been identified in viruses, bacteria, fungi, protozoan parasites, insects, and plants. The structure of the GH18 domain is an eight-stranded beta/alpha barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel. The GH18 family includes chitotriosidase, chitobiase, hevamine, zymocin-alpha, narbonin, SI-CLP (stabilin-1 interacting chitinase-like protein), IDGF (imaginal disc growth factor), CFLE (cortical fragment-lytic enzyme) spore hydrolase, the type III and type V plant chitinases, the endo-beta-N-acetylglucosaminidases, and the chitolectins. The GH85 (glycosyl hydrolase, family 85) ENGases (endo-beta-N-acetylglucosaminidases) are closely related to the GH18 chitinases and are inclu
Probab=83.49 E-value=5.7 Score=35.86 Aligned_cols=86 Identities=16% Similarity=0.195 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHC--CCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 43 WEFKEMVKALHGA--GIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 43 edl~~lv~~aH~~--Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
+.....+++++++ |++|++=+--.. . .. . . --..+++.|+.++
T Consensus 49 ~~~~~~i~~l~~~~~g~kv~~sigg~~-~----~~------------~----------------~--~~~~~~~~~~~f~ 93 (210)
T cd00598 49 EPLKGALEELASKKPGLKVLISIGGWT-D----SS------------P----------------F--TLASDPASRAAFA 93 (210)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEEcCCC-C----CC------------C----------------c--hhhcCHHHHHHHH
Confidence 5566777788887 999998772111 0 00 0 0 1134578899999
Q ss_pred HHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 121 DSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
+.+..+++++|+||+-+|--..-..+. ........++++++..
T Consensus 94 ~~~~~~v~~~~~DGidiD~E~~~~~~~-~~~~~~~~ll~~lr~~ 136 (210)
T cd00598 94 NSLVSFLKTYGFDGVDIDWEYPGAADN-SDRENFITLLRELRSA 136 (210)
T ss_pred HHHHHHHHHcCCCceEEeeeCCCCcCc-cHHHHHHHHHHHHHHH
Confidence 999999999999999999432211110 0112345677777664
No 106
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of beta-galactosidase enzymes (3.2.1.23 from EC) belong to the glycosyl hydrolase 42 family GH42 from CAZY. The enzyme catalyses the hydrolysis of terminal, non-reducing terminal beta-D-galactosidase residues.; GO: 0004565 beta-galactosidase activity, 0005975 carbohydrate metabolic process, 0009341 beta-galactosidase complex; PDB: 1KWK_A 1KWG_A 3U7V_A.
Probab=82.50 E-value=3.4 Score=41.37 Aligned_cols=86 Identities=19% Similarity=0.212 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
.+.|.++|+.|++.||+|||-+. .+..+ .|+.. ..|+.-..+.+|....+.. ....++.+|.+++++.+
T Consensus 46 F~~lD~~l~~a~~~Gi~viL~~~-~~~~P-----~Wl~~----~~Pe~~~~~~~g~~~~~g~-~~~~~~~~p~yr~~~~~ 114 (374)
T PF02449_consen 46 FSWLDRVLDLAAKHGIKVILGTP-TAAPP-----AWLYD----KYPEILPVDADGRRRGFGS-RQHYCPNSPAYREYARR 114 (374)
T ss_dssp -HHHHHHHHHHHCTT-EEEEEEC-TTTS------HHHHC----CSGCCC-B-TTTSBEECCC-STT-HCCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCeEEEEec-ccccc-----cchhh----hcccccccCCCCCcCccCC-ccccchhHHHHHHHHHH
Confidence 47899999999999999999775 22222 24421 1133333344444333222 33456778999999999
Q ss_pred HHHHHHHhcC----ccEEEEe
Q 011993 122 SLRHWVVEYH----VDGFRFD 138 (473)
Q Consensus 122 ~~~~w~~~~g----iDGfR~D 138 (473)
.+...++.|+ |-|+-+|
T Consensus 115 ~~~~l~~~y~~~p~vi~~~i~ 135 (374)
T PF02449_consen 115 FIRALAERYGDHPAVIGWQID 135 (374)
T ss_dssp HHHHHHHHHTTTTTEEEEEEC
T ss_pred HHHHHHhhccccceEEEEEec
Confidence 8888886654 6677777
No 107
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=82.30 E-value=13 Score=36.52 Aligned_cols=122 Identities=12% Similarity=0.089 Sum_probs=61.5
Q ss_pred CcCCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCC-CCcccccc-CC-CCcc
Q 011993 16 TWGYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDA-NPYTTSFR-GI-DNKV 88 (473)
Q Consensus 16 ~~GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~-~~~~~~~~-~~-~~~~ 88 (473)
..|.=++-...|+|.-...+.. ....++.|++|++++|+.|-++++-+ +|.|..... .+|..... .. ....
T Consensus 46 g~glii~~~~~v~~~~~~~~~~~~~~~d~~~~~~~~l~~~vh~~G~~~~~QL--~H~G~~~~~~~~~~~~~~~~~~~~~~ 123 (336)
T cd02932 46 GAGLVIVEATAVSPEGRITPGDLGLWNDEQIEALKRIVDFIHSQGAKIGIQL--AHAGRKASTAPPWEGGGPLLPPGGGG 123 (336)
T ss_pred CCcEEEEcceEECCCcCCCCCceeecCHHHHHHHHHHHHHHHhcCCcEEEEc--cCCCcCCCCCCCccccccccccccCC
Confidence 3455555555666652111111 12568999999999999999998876 577762210 01110000 00 0000
Q ss_pred ceeecCCCCcccccCCcCCCCCCC---HHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 89 YYMVDGTGQLLNYAGCGNTLNCNH---PVVMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~dln~~n---p~V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
.-.+.+...........|. .... .++.+.+.+.++... +.|+||+-|.+++
T Consensus 124 ~~~~~ps~~~~~~~~~~p~-~mt~~eI~~ii~~~~~aA~~a~-~aGfDgVei~~~~ 177 (336)
T cd02932 124 WQVVAPSAIPFDEGWPTPR-ELTREEIAEVVDAFVAAARRAV-EAGFDVIEIHAAH 177 (336)
T ss_pred CceeCCCCCcCCCCCCCCC-cCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcccc
Confidence 0011111100000000110 1111 346667777888887 6899999999876
No 108
>PF00150 Cellulase: Cellulase (glycosyl hydrolase family 5); InterPro: IPR001547 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 5 GH5 from CAZY comprises enzymes with several known activities; endoglucanase (3.2.1.4 from EC); beta-mannanase (3.2.1.78 from EC); exo-1,3-glucanase (3.2.1.58 from EC); endo-1,6-glucanase (3.2.1.75 from EC); xylanase (3.2.1.8 from EC); endoglycoceramidase (3.2.1.123 from EC). The microbial degradation of cellulose and xylans requires several types of enzymes. Fungi and bacteria produces a spectrum of cellulolytic enzymes (cellulases) and xylanases which, on the basis of sequence similarities, can be classified into families. One of these families is known as the cellulase family A [] or as the glycosyl hydrolases family 5 []. One of the conserved regions in this family contains a conserved glutamic acid residue which is potentially involved [] in the catalytic mechanism.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3NDY_A 3NDZ_B 1LF1_A 1TVP_B 1TVN_A 3AYR_A 3AYS_A 1QI0_A 1W3K_A 1OCQ_A ....
Probab=82.23 E-value=1.5 Score=41.65 Aligned_cols=24 Identities=33% Similarity=0.396 Sum_probs=21.6
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEE
Q 011993 40 KASWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.++.|+++|++|+++||+||+|+
T Consensus 59 ~~~~~ld~~v~~a~~~gi~vild~ 82 (281)
T PF00150_consen 59 TYLARLDRIVDAAQAYGIYVILDL 82 (281)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEE
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEe
Confidence 558999999999999999999999
No 109
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=81.48 E-value=15 Score=36.65 Aligned_cols=29 Identities=17% Similarity=0.225 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+-++.+++|++++|+.|-++++-+. |.+.
T Consensus 80 ~~i~~~~~l~~~vh~~G~~i~~QL~--H~G~ 108 (370)
T cd02929 80 GDIRNLAAMTDAVHKHGALAGIELW--HGGA 108 (370)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEecc--cCCC
Confidence 5689999999999999999998875 8876
No 110
>PF00724 Oxidored_FMN: NADH:flavin oxidoreductase / NADH oxidase family; InterPro: IPR001155 The TIM-barrel fold is a closed barrel structure composed of an eight-fold repeat of beta-alpha units, where the eight parallel beta strands on the inside are covered by the eight alpha helices on the outside []. It is a widely distributed fold which has been found in many enzyme families that catalyse completely unrelated reactions []. The active site is always found at the C-terminal end of this domain. Proteins in this entry are a variety of NADH:flavin oxidoreductase/NADH oxidase enzymes, found mostly in bacteria or fungi, that contain a TIM-barrel fold. They commonly use FMN/FAD as cofactor and include: dimethylamine dehydrogenase trimethylamine dehydrogenase 12-oxophytodienoate reductase NADPH dehydrogenase NADH oxidase ; GO: 0010181 FMN binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GKA_B 3P67_A 3F03_K 2ABA_A 1VYR_A 1GVO_A 3KFT_B 3P8I_A 1GVQ_A 3P74_A ....
Probab=81.32 E-value=5.7 Score=39.28 Aligned_cols=52 Identities=15% Similarity=0.115 Sum_probs=35.1
Q ss_pred cCCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 17 WGYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 17 ~GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.|--++-...|+|.-...+.. ...-++.|++|++++|+.|-++++-+ +|.+.
T Consensus 50 ~Glii~~~~~v~~~~~~~~~~~~i~~d~~i~~~k~l~~~vh~~Ga~i~~QL--~H~G~ 105 (341)
T PF00724_consen 50 AGLIITEATAVSPEGRGFPGQPGIWDDEQIPGLKKLADAVHAHGAKIIAQL--WHAGR 105 (341)
T ss_dssp TSEEEEEEEESSGGGSSSTTSEBSSSHHHHHHHHHHHHHHHHTTSEEEEEE--E--GG
T ss_pred CceEEecccccccccccccccchhchhhHHHHHHHHHHHHHhcCccceeec--ccccc
Confidence 344555555666665532222 12668999999999999999999987 57776
No 111
>PLN02411 12-oxophytodienoate reductase
Probab=81.19 E-value=13 Score=37.40 Aligned_cols=51 Identities=14% Similarity=0.057 Sum_probs=35.5
Q ss_pred CCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 18 GYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
|--++-...|+|.-...+.. ...-++.+++|++++|+.|-++++-+ +|.|.
T Consensus 58 GLIIte~~~V~~~g~~~~~~~gi~~d~~i~~~~~l~~avH~~G~~i~~QL--~H~Gr 112 (391)
T PLN02411 58 GFLISEGTLISPTAPGFPHVPGIYSDEQVEAWKKVVDAVHAKGSIIFCQL--WHVGR 112 (391)
T ss_pred CEEEeCceEECcccCcCCCCCccCCHHHHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 55566666676653221111 12567899999999999999999887 47776
No 112
>PF01120 Alpha_L_fucos: Alpha-L-fucosidase; InterPro: IPR000933 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Family 29 (GH29 from CAZY) encompasses alpha-L-fucosidases (3.2.1.51 from EC) [], which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Alpha-L-fucosidase is responsible for hydrolysing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Fucosylated glycoconjugates are involved in numerous biological events, making alpha-l-fucosidases, the enzymes responsible for their processing, critically important. Deficiency in alpha-l-fucosidase activity is associated with fucosidosis, a lysosomal storage disorder characterised by rapid neurodegeneration, resulting in severe mental and motor deterioration []. The enzyme is a hexamer and displays a two-domain fold, composed of a catalytic (beta/alpha)(8)-like domain and a C-terminal beta-sandwich domain []. Drosophila melanogaster spermatozoa contains an alpha-l-fucosidase that might be involved in fertilisation by interacting with alpha-l-fucose residues on the micropyle of the eggshell []. In human sperm, membrane-associated alpha-l-fucosidase is stable for extended periods of time, which is made possible by membrane domains and compartmentalisation. These help preserve protein integrity []. ; GO: 0004560 alpha-L-fucosidase activity, 0005975 carbohydrate metabolic process; PDB: 3EYP_B 2ZX6_A 2ZWY_B 2ZX8_B 2WSP_A 2ZXA_A 2ZWZ_B 1ODU_B 1HL9_A 2ZX5_B ....
Probab=81.00 E-value=9.1 Score=37.90 Aligned_cols=92 Identities=17% Similarity=0.051 Sum_probs=50.8
Q ss_pred CCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc
Q 011993 20 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL 99 (473)
Q Consensus 20 ~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (473)
..++|..++..++. +=+++|+++|+++||++.+ +.|. - .|... .+ ..... .
T Consensus 124 ~~t~~~v~~~~~kr---------Div~El~~A~rk~Glk~G~-----Y~S~---~-dw~~~-------~~-~~~~~---~ 174 (346)
T PF01120_consen 124 KYTDYNVVNSGPKR---------DIVGELADACRKYGLKFGL-----YYSP---W-DWHHP-------DY-PPDEE---G 174 (346)
T ss_dssp TT-SSBGGGGGGTS----------HHHHHHHHHHHTT-EEEE-----EEES---S-SCCCT-------TT-TSSCH---C
T ss_pred CCCcccccCCCCCC---------CHHHHHHHHHHHcCCeEEE-----Eecc---h-HhcCc-------cc-CCCcc---C
Confidence 34566666655666 8999999999999999999 3333 1 12210 00 00000 0
Q ss_pred cccCCcCCCCC-CCHHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 100 NYAGCGNTLNC-NHPVVMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 100 ~~~~~~~dln~-~np~V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
.... ..+..- ....+.+++..-++-.+.+|.+|.+=+|...
T Consensus 175 ~~~~-~~~~~~~~~~~~~~~~~~ql~EL~~~Y~~d~lWfDg~~ 216 (346)
T PF01120_consen 175 DENG-PADGPGNWQRYYNEYWLAQLRELLTRYKPDILWFDGGW 216 (346)
T ss_dssp HHCC---HCCHHHHHHHHHHHHHHHHHHHHCSTESEEEEESTT
T ss_pred Cccc-ccccchhhHhHhhhhhHHHHHHHHhCCCcceEEecCCC
Confidence 0000 000000 0123555778888888889999999999654
No 113
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=80.97 E-value=17 Score=36.20 Aligned_cols=29 Identities=24% Similarity=0.339 Sum_probs=25.3
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.-++.|++|++++|+.|=++++-+ +|.|.
T Consensus 75 ~~i~~~~~l~d~vh~~Ga~i~~QL--~H~Gr 103 (361)
T cd04747 75 DALAGWKKVVDEVHAAGGKIAPQL--WHVGA 103 (361)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEec--cCCCC
Confidence 457899999999999999999887 67776
No 114
>PF07745 Glyco_hydro_53: Glycosyl hydrolase family 53; InterPro: IPR011683 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain is found in family 53 of the glycosyl hydrolase classification []. These enzymes are endo-1,4- beta-galactanases (3.2.1.89 from EC). The structure of this domain is known [] and has a TIM barrel fold.; GO: 0015926 glucosidase activity; PDB: 1HJQ_A 1HJS_A 1HJU_B 1FHL_A 1FOB_A 2GFT_A 1UR4_B 1UR0_A 1R8L_B 2CCR_A ....
Probab=80.33 E-value=5 Score=39.29 Aligned_cols=26 Identities=27% Similarity=0.451 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
++...++.++|++.||+|+||+ |-|.
T Consensus 57 ~~~~~~~akrak~~Gm~vlldf---HYSD 82 (332)
T PF07745_consen 57 LEDVIALAKRAKAAGMKVLLDF---HYSD 82 (332)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE----SSS
T ss_pred HHHHHHHHHHHHHCCCeEEEee---cccC
Confidence 6999999999999999999999 7553
No 115
>cd02877 GH18_hevamine_XipI_class_III This conserved domain family includes xylanase inhibitor Xip-I, and the class III plant chitinases such as hevamine, concanavalin B, and PPL2, all of which have a glycosyl hydrolase family 18 (GH18) domain. Hevamine is a class III endochitinase that hydrolyzes the linear polysaccharide chains of chitin and peptidoglycan and is important for defense against pathogenic bacteria and fungi. PPL2 (Parkia platycephala lectin 2) is a class III chitinase from Parkia platycephala seeds that hydrolyzes beta(1-4) glycosidic bonds linking 2-acetoamido-2-deoxy-beta-D-glucopyranose units in chitin.
Probab=80.06 E-value=6.4 Score=37.65 Aligned_cols=21 Identities=19% Similarity=0.308 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
.+|.+-|+.|+++|+||||-+
T Consensus 59 ~~~~~dI~~cq~~G~KVlLSI 79 (280)
T cd02877 59 PQLGADIKHCQSKGKKVLLSI 79 (280)
T ss_pred hhHHHHHHHHHHCCCEEEEEc
Confidence 689999999999999999965
No 116
>KOG2499 consensus Beta-N-acetylhexosaminidase [Carbohydrate transport and metabolism]
Probab=78.31 E-value=9.5 Score=38.69 Aligned_cols=28 Identities=25% Similarity=0.296 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEE-ecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDV-VYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~-V~NH~~~ 70 (473)
||..++|+-|.-||||||-++ ++.|++.
T Consensus 250 eDv~evV~yarlRGIRVlpEfD~PgHt~s 278 (542)
T KOG2499|consen 250 EDVSEVVEYARLRGIRVLPEFDTPGHTGS 278 (542)
T ss_pred HHHHHHHHHHHhccceeeecccCCccccc
Confidence 999999999999999999988 5788775
No 117
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.78 E-value=19 Score=35.52 Aligned_cols=29 Identities=21% Similarity=0.289 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.-++.|++|++++|+.|-++++-+ +|.|.
T Consensus 79 ~~i~~~~~l~~~vh~~G~~~~~Ql--~h~G~ 107 (338)
T cd04733 79 EDLEAFREWAAAAKANGALIWAQL--NHPGR 107 (338)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEc--cCCCc
Confidence 457899999999999999998876 58776
No 118
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=77.59 E-value=11 Score=36.85 Aligned_cols=114 Identities=12% Similarity=0.042 Sum_probs=62.8
Q ss_pred CCcCCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccce
Q 011993 15 NTWGYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 90 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 90 (473)
+-+|.=++-...|+|.-...+.. ...-++.+|++++++|+.|-++++-+ +|.+.... ..+. . . ..
T Consensus 45 gg~glii~e~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~vh~~g~~~~~Ql--~h~G~~~~-~~~~-~---~--~~-- 113 (327)
T cd02803 45 GGVGLIITEAAYVDPEGKGYPGQLGIYDDEQIPGLRKLTEAVHAHGAKIFAQL--AHAGRQAQ-PNLT-G---G--PP-- 113 (327)
T ss_pred cCCcEEEECcEEEcCcccCCCCCcCcCCHHHHHHHHHHHHHHHhCCCHhhHHh--hCCCcCCC-CcCC-C---C--Cc--
Confidence 34566667777777764322111 12568999999999999999998765 78776221 1100 0 0 00
Q ss_pred eecCCCCcccccCCcC-CCCCCC-HHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 91 MVDGTGQLLNYAGCGN-TLNCNH-PVVMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~~-dln~~n-p~V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
..+...........| .+.... .++.+.+.+.++... +.|+||+-|.+++
T Consensus 114 -~~~s~~~~~~~~~~~~~mt~~ei~~~i~~~~~aA~~a~-~aGfDgveih~~~ 164 (327)
T cd02803 114 -PAPSAIPSPGGGEPPREMTKEEIEQIIEDFAAAARRAK-EAGFDGVEIHGAH 164 (327)
T ss_pred -cCCCCCCCCCCCCCCCcCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcchh
Confidence 000000000000001 111100 356666777777777 7899999999874
No 119
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=77.37 E-value=22 Score=35.72 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=23.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccc-cC
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHT-NE 70 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~-~~ 70 (473)
.++.||++++++|+.|-++++-+ +|. +.
T Consensus 81 ~i~~~k~l~davh~~G~~i~~QL--~H~~Gr 109 (382)
T cd02931 81 FIRTAKEMTERVHAYGTKIFLQL--TAGFGR 109 (382)
T ss_pred HhHHHHHHHHHHHHcCCEEEEEc--cCcCCC
Confidence 47889999999999999999776 575 65
No 120
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=77.29 E-value=26 Score=34.94 Aligned_cols=52 Identities=15% Similarity=0.196 Sum_probs=36.2
Q ss_pred cCCCCCcccCCCCCCCCCCCCC----CchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 17 WGYSTINFFSPMSRYAAGGGGP----LKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 17 ~GY~~~d~~~vdp~~Gt~~~~~----~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.|--++-...|++.-...+..+ ..-++.|+++++++|+.|-++++-+ +|+|.
T Consensus 49 ~GLIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~lad~vH~~Ga~i~~QL--~H~Gr 104 (362)
T PRK10605 49 AGLIISEATQISAQAKGYAGAPGLHSPEQIAAWKKITAGVHAEGGHIAVQL--WHTGR 104 (362)
T ss_pred CCEEEECceeeCcccccCCCCCcccCHHHHHHHHHHHHHHHhCCCEEEEec--cCCCC
Confidence 4555566667776633221111 2567899999999999999999855 68887
No 121
>cd06547 GH85_ENGase Endo-beta-N-acetylglucosaminidase (ENGase) hydrolyzes the N-N'-diacetylchitobiosyl core of N-glycosylproteins. The beta-1,4-glycosyl bond located between two N-acetylglucosamine residues is hydrolyzed such that N-acetylglucosamine 1 remains with the protein and N-acetylglucosamine 2 forms the reducing end of the released glycan. ENGase is a key enzyme in the processing of free oligosaccharides in the cytosol of eukaryotes. Oligosaccharides formed in the lumen of the endoplasmic reticulum are transported into the cytosol where they are catabolized by cytosolic ENGases and other enzymes, possibly to maximize the reutilization of the component sugars. ENGases have an eight-stranded alpha/beta barrel topology and are classified as a family 85 glycosyl hydrolase (GH85) domain. The GH85 ENGases are sequence-similar to the family 18 glycosyl hydrolases, also known as GH18 chitinases. An ENGase-like protein is also found in bacteria and is included in this alignment mod
Probab=76.67 E-value=3.5 Score=40.65 Aligned_cols=65 Identities=17% Similarity=0.254 Sum_probs=41.6
Q ss_pred HHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHHHHHH
Q 011993 47 EMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDSLRHW 126 (473)
Q Consensus 47 ~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~~~~w 126 (473)
..|++||+.|++|+-=+.+...+ ...|+..+ =-.+++.+..+++-|...
T Consensus 50 ~~idaAHknGV~Vlgti~~e~~~----~~~~~~~l---------------------------L~~~~~~~~~~a~kLv~l 98 (339)
T cd06547 50 DWINAAHRNGVPVLGTFIFEWTG----QVEWLEDF---------------------------LKKDEDGSFPVADKLVEV 98 (339)
T ss_pred HHHHHHHhcCCeEEEEEEecCCC----chHHHHHH---------------------------hccCcccchHHHHHHHHH
Confidence 56889999999999866544321 11222111 111145566667777777
Q ss_pred HHhcCccEEEEecccc
Q 011993 127 VVEYHVDGFRFDLASV 142 (473)
Q Consensus 127 ~~~~giDGfR~Daa~~ 142 (473)
++.||+||+-||.=..
T Consensus 99 ak~yGfDGw~iN~E~~ 114 (339)
T cd06547 99 AKYYGFDGWLINIETE 114 (339)
T ss_pred HHHhCCCceEeeeecc
Confidence 7789999999995443
No 122
>cd06546 GH18_CTS3_chitinase GH18 domain of CTS3 (chitinase 3), an uncharacterized protein from the human fungal pathogen Coccidioides posadasii. CTS3 has a chitinase-like glycosyl hydrolase family 18 (GH18) domain; and has homologs in bacteria as well as fungi.
Probab=74.36 E-value=18 Score=34.07 Aligned_cols=81 Identities=20% Similarity=0.247 Sum_probs=49.8
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
.++.+=|++|+.+|+||++-+ |... ... | . .+ -.+++-|+.+.+.
T Consensus 59 ~~~~~~i~~~~~~g~KVllSi-----GG~~-~~~----f--------------------s----~~-a~~~~~r~~f~~s 103 (256)
T cd06546 59 TTLWTELAILQSSGVKVMGML-----GGAA-PGS----F--------------------S----RL-DDDDEDFERYYGQ 103 (256)
T ss_pred hHHHHHHHHHHhCCCEEEEEE-----CCCC-CCC----c--------------------c----cc-cCCHHHHHHHHHH
Confidence 456666678899999999855 3200 000 0 0 01 1346667777788
Q ss_pred HHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 123 LRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
+..+++++|+||+=||-=... .......++++++..
T Consensus 104 ~~~~~~~~~~DGiDiDwE~p~------~~~~~~~ll~~Lr~~ 139 (256)
T cd06546 104 LRDMIRRRGLDGLDLDVEEPM------SLDGIIRLIDRLRSD 139 (256)
T ss_pred HHHHHHHhCCCceEEeeecCC------CHhHHHHHHHHHHHH
Confidence 888888999999999932211 112345677777764
No 123
>cd06569 GH20_Sm-chitobiase-like The chitobiase of Serratia marcescens is a beta-N-1,4-acetylhexosaminidase with a glycosyl hydrolase family 20 (GH20) domain that hydrolyzes the beta-1,4-glycosidic linkages in oligomers derived from chitin. Chitin is degraded by a two step process: i) a chitinase hydrolyzes the chitin to oligosaccharides and disaccharides such as di-N-acetyl-D-glucosamine and chitobiose, ii) chitobiase then further degrades these oligomers into monomers. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=72.29 E-value=4.6 Score=41.45 Aligned_cols=114 Identities=16% Similarity=0.132 Sum_probs=61.0
Q ss_pred CCCcCCCCCcccCCCCCCCCCCC-----CCCchHHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCC----CCccccccC
Q 011993 14 VNTWGYSTINFFSPMSRYAAGGG-----GPLKASWEFKEMVKALHGAGIEVILDV-VYNHTNEADDA----NPYTTSFRG 83 (473)
Q Consensus 14 ~~~~GY~~~d~~~vdp~~Gt~~~-----~~~~~~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~----~~~~~~~~~ 83 (473)
+++.|+...+...+.|.+|+.+. ++.=.-+|+++||+-|++|||.||-.+ +|.|+...-.. .|-+... +
T Consensus 63 ga~r~~~~~~~~~~~~~~~~~~~~~~~~~g~YT~~di~eiv~yA~~rgI~VIPEID~PGH~~a~l~a~~~~yp~l~~~-g 141 (445)
T cd06569 63 GAKRCHDLSETTCLLPQLGSGPDTNNSGSGYYSRADYIEILKYAKARHIEVIPEIDMPGHARAAIKAMEARYRKLMAA-G 141 (445)
T ss_pred ccccccccccccccccccccCcccCcccCCccCHHHHHHHHHHHHHcCCEEEEccCCchhHHHHHHhhhccchhhhcc-C
Confidence 34555555555555555653210 001124999999999999999999887 57786641000 0100000 0
Q ss_pred CCC--ccceeecCCC--CcccccC-CcCCCCCCCHHHHHHHHHHHHHHHH
Q 011993 84 IDN--KVYYMVDGTG--QLLNYAG-CGNTLNCNHPVVMELILDSLRHWVV 128 (473)
Q Consensus 84 ~~~--~~~~~~~~~~--~~~~~~~-~~~dln~~np~V~~~i~~~~~~w~~ 128 (473)
... ..|...++.. .+....+ ....||-.+|++.+++.+++...++
T Consensus 142 ~~~~~~~~~~~d~~~~~~~~~~~~~~~~~L~p~~~~ty~fl~~vl~Ev~~ 191 (445)
T cd06569 142 KPAEAEEYRLSDPADTSQYLSVQFYTDNVINPCMPSTYRFVDKVIDEIAR 191 (445)
T ss_pred CccccccccccCcccccccccccccccccccCCchhHHHHHHHHHHHHHH
Confidence 000 0111111110 1111011 1135888999999999999999984
No 124
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=71.27 E-value=33 Score=34.18 Aligned_cols=91 Identities=18% Similarity=0.184 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCC-CCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCC-HHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEAD-DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH-PVVMELI 119 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n-p~V~~~i 119 (473)
++.|+++++++|+.|=++++-+ +|.|.-. ..++|... .-.+.-.... .+ .......+.-+. .+|.+.+
T Consensus 82 i~~~~~vt~avH~~G~~i~iQL--~H~Gr~~~~~~~~~~~---~vapS~~~~~-~~----~~~~pr~mt~~eI~~ii~~f 151 (363)
T COG1902 82 IPGLKRLTEAVHAHGAKIFIQL--WHAGRKARASHPWLPS---AVAPSAIPAP-GG----RRATPRELTEEEIEEVIEDF 151 (363)
T ss_pred hHHHHHHHHHHHhcCCeEEEEe--ccCcccccccccCCCc---ccCCCccccc-cC----CCCCCccCCHHHHHHHHHHH
Confidence 7899999999999999999876 6888511 13333200 0000000000 00 000001111100 3566666
Q ss_pred HHHHHHHHHhcCccEEEEeccccc
Q 011993 120 LDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
.++++.=. +-|+||.-|-+|+..
T Consensus 152 ~~AA~rA~-~AGFDgVEIH~AhGY 174 (363)
T COG1902 152 ARAARRAK-EAGFDGVEIHGAHGY 174 (363)
T ss_pred HHHHHHHH-HcCCCEEEEeeccch
Confidence 66777766 799999999999853
No 125
>PF09154 DUF1939: Domain of unknown function (DUF1939); InterPro: IPR015237 This entry represents a C-terminal domain associated with prokaryotic alpha-amylases. It adopts a secondary structure consisting of an eight-stranded antiparallel beta-sheet containing a Greek key motif. Its exact function has not, as yet, been determined []. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 1MXD_A 1MWO_A 1MXG_A 1W9X_A 2DIE_A 1VJS_A 1BPL_B 1BLI_A 1OB0_A 1E3Z_A ....
Probab=70.97 E-value=3.2 Score=29.09 Aligned_cols=56 Identities=7% Similarity=0.066 Sum_probs=33.5
Q ss_pred EEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEE
Q 011993 410 IYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 470 (473)
Q Consensus 410 ~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 470 (473)
++|++|.++...+..+.....+..|.++++........ -...-.+|+++|.++.|+
T Consensus 1 L~v~iN~~~~~k~~~Vgt~~ag~~~~D~tGn~~~~vti-----d~dG~~~f~v~~~s~SVW 56 (57)
T PF09154_consen 1 LAVYINGSAGWKRMWVGTNWAGKTFYDYTGNSSETVTI-----DEDGWGEFPVPPGSVSVW 56 (57)
T ss_dssp EEEEEE-SSSEEEEEEEGGGTTEEEEETTSSSSSEEEE------TTSEEEEEE-TTEEEEE
T ss_pred CEEEEeCCCCeEEEEEccccCCCEEEEccCCCCCeEEE-----CCCeEEEEEECCCEEEEe
Confidence 46677999888888887765566666655543321100 001234899999999886
No 126
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=70.73 E-value=40 Score=37.35 Aligned_cols=98 Identities=9% Similarity=0.091 Sum_probs=51.2
Q ss_pred chHHHHHHHHHHHHHC-CCEEEEEEecccccCCCCC-CCccccccCCCCccceeecCCCCcccccCCcCCCCCCC---HH
Q 011993 40 KASWEFKEMVKALHGA-GIEVILDVVYNHTNEADDA-NPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PV 114 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~-Gi~VilD~V~NH~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n---p~ 114 (473)
.-++.++++++++|+. |-++++=+ +|.|..... -+|...........|....+...........|. ...- .+
T Consensus 472 ~~i~~~~~~~~~vh~~gg~~i~~QL--~h~Gr~~~~~~~~~~~~~~~~~~~~~~~~pS~~~~~~~~~~p~-~mt~~eI~~ 548 (765)
T PRK08255 472 EQEAAWKRIVDFVHANSDAKIGIQL--GHSGRKGSTRLGWEGIDEPLEEGNWPLISASPLPYLPGSQVPR-EMTRADMDR 548 (765)
T ss_pred HHHHHHHHHHHHHHhcCCceEEEEc--cCCcccccccccccccccccccCCCceeCCCCCcCCCCCCCCC-cCCHHHHHH
Confidence 5678999999999999 69998877 888872211 112100000000112112121110000000110 1111 24
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 115 VMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 115 V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.+.+.++++.-. +.|+||+-|.+++
T Consensus 549 ~i~~f~~aA~~a~-~aGfDgveih~ah 574 (765)
T PRK08255 549 VRDDFVAAARRAA-EAGFDWLELHCAH 574 (765)
T ss_pred HHHHHHHHHHHHH-HcCCCEEEEeccc
Confidence 5566666676655 7899999999884
No 127
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=70.14 E-value=37 Score=33.50 Aligned_cols=110 Identities=9% Similarity=0.049 Sum_probs=59.4
Q ss_pred CCcCCCCCcccCCCCCCCCCCC----CCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccce
Q 011993 15 NTWGYSTINFFSPMSRYAAGGG----GPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 90 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~Gt~~~----~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 90 (473)
+-.|-=++-...|+|.-...+. ....-++.+++|++++|+.|-++++-+ +|.+. .... .+ ..
T Consensus 49 gG~GlIi~~~~~v~~~~~~~~~~~~~~~d~~i~~~r~l~d~vh~~G~~i~~QL--~H~G~---~~~~----~~---~~-- 114 (337)
T PRK13523 49 GQVGLVIVEATAVLPEGRISDKDLGIWDDEHIEGLHKLVTFIHDHGAKAAIQL--AHAGR---KAEL----EG---DI-- 114 (337)
T ss_pred CCCeEEEECCeEECccccCCCCceecCCHHHHHHHHHHHHHHHhcCCEEEEEc--cCCCC---CCCC----CC---Cc--
Confidence 3445556666667665221111 122568999999999999999999876 67776 2110 00 00
Q ss_pred eecCCCCcccccCCcCCCCCCC---HHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 91 MVDGTGQLLNYAGCGNTLNCNH---PVVMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~~dln~~n---p~V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.|...........|. .... .++.+.+.+.++.-. +.|+||+-|.+++
T Consensus 115 -~~ps~~~~~~~~~~p~-~mt~eeI~~ii~~f~~aA~~a~-~aGfDgVeih~ah 165 (337)
T PRK13523 115 -VAPSAIPFDEKSKTPV-EMTKEQIKETVLAFKQAAVRAK-EAGFDVIEIHGAH 165 (337)
T ss_pred -cCCCCCCCCCCCCCCC-cCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcccc
Confidence 0010000000000110 1111 245555555666665 7899999999885
No 128
>PLN02950 4-alpha-glucanotransferase
Probab=70.02 E-value=8.6 Score=43.08 Aligned_cols=24 Identities=13% Similarity=0.112 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecc
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYN 66 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~N 66 (473)
.+++++.+.|+++||.|+-|+.+.
T Consensus 461 ~Ql~~~~~yA~~~Gi~L~GDLpig 484 (909)
T PLN02950 461 SQLSEAAEYARKKGVVLKGDLPIG 484 (909)
T ss_pred HHHHHHHHHHHHCCCEEEEEeece
Confidence 568889999999999999999874
No 129
>COG3867 Arabinogalactan endo-1,4-beta-galactosidase [Carbohydrate transport and metabolism]
Probab=69.92 E-value=9.8 Score=36.10 Aligned_cols=25 Identities=28% Similarity=0.450 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+-..++.++|...||||++|+ |-|.
T Consensus 104 ~k~ieiakRAk~~GmKVl~dF---HYSD 128 (403)
T COG3867 104 KKAIEIAKRAKNLGMKVLLDF---HYSD 128 (403)
T ss_pred HHHHHHHHHHHhcCcEEEeec---cchh
Confidence 444556679999999999999 7553
No 130
>PLN02808 alpha-galactosidase
Probab=69.39 E-value=17 Score=36.37 Aligned_cols=73 Identities=3% Similarity=-0.128 Sum_probs=45.9
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCC---CCC---CCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCe
Q 011993 393 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP---PPK---RQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYS 466 (473)
Q Consensus 393 ~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~---~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~ 466 (473)
..+.+-+|.+...++...++++|.+++++++.++.. ... .+.++|-..... +......+++|+|++
T Consensus 306 ~~~~~~vW~k~L~~g~~aVal~N~~~~~~~~~~~~~~lgl~~~~~~~vrDlWs~~~~--------g~~~~~~~~~v~pHg 377 (386)
T PLN02808 306 KDGDLEVWAGPLSKKRVAVVLWNRGSSRATITARWSDIGLNSSAVVNARDLWAHSTQ--------SSVKGQLSALVESHA 377 (386)
T ss_pred ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEEHHHhCCCCCCceEEEECCCCCcc--------CcccceEEEEECCce
Confidence 345688889887767889999999988777765431 111 122333322111 111233578999999
Q ss_pred EEEEEeC
Q 011993 467 SILLEAK 473 (473)
Q Consensus 467 ~~vl~~~ 473 (473)
+++|+.+
T Consensus 378 ~~~~rlt 384 (386)
T PLN02808 378 CKMYVLT 384 (386)
T ss_pred EEEEEEe
Confidence 9999863
No 131
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=69.32 E-value=46 Score=32.86 Aligned_cols=114 Identities=12% Similarity=0.036 Sum_probs=61.0
Q ss_pred CCcCCCCCcccCCCCCC-CCCCCC---CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccce
Q 011993 15 NTWGYSTINFFSPMSRY-AAGGGG---PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYY 90 (473)
Q Consensus 15 ~~~GY~~~d~~~vdp~~-Gt~~~~---~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~ 90 (473)
+-+|.-++-...|+|.- +.++.. ...-++.+++|++++|+.|-++++- ++|.+. ..... ..+. +.
T Consensus 45 gG~GlIi~e~~~v~~~~~~~~~~~~l~~d~~i~~~~~l~~~vh~~g~~~~~Q--l~H~G~---~~~~~--~~~~--~~-- 113 (343)
T cd04734 45 GGAGLIITEGSSVHPSDSPAFGNLNASDDEIIPGFRRLAEAVHAHGAVIMIQ--LTHLGR---RGDGD--GSWL--PP-- 113 (343)
T ss_pred CCCCEEEEeeeeeCCcccCCCCccccCCHHHHHHHHHHHHHHHhcCCeEEEe--ccCCCc---CcCcc--cCCC--cc--
Confidence 34566677777777652 111111 1145789999999999999999985 578776 22110 0000 00
Q ss_pred eecCCCCcccccCCcCCCCCCC---HHHHHHHHHHHHHHHHhcCccEEEEecccc
Q 011993 91 MVDGTGQLLNYAGCGNTLNCNH---PVVMELILDSLRHWVVEYHVDGFRFDLASV 142 (473)
Q Consensus 91 ~~~~~~~~~~~~~~~~dln~~n---p~V~~~i~~~~~~w~~~~giDGfR~Daa~~ 142 (473)
..+...........|. ...- .++.+.+.++++.-. +.|+||+-|-+|+.
T Consensus 114 -~~ps~~~~~~~~~~~~-~mt~~eI~~ii~~f~~AA~ra~-~aGfDgVeih~ahG 165 (343)
T cd04734 114 -LAPSAVPEPRHRAVPK-AMEEEDIEEIIAAFADAARRCQ-AGGLDGVELQAAHG 165 (343)
T ss_pred -cCCCCCCCCCCCCCCC-cCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEccccc
Confidence 0000000000000010 1111 345566666666655 78999999998764
No 132
>PLN03236 4-alpha-glucanotransferase; Provisional
Probab=69.11 E-value=11 Score=41.06 Aligned_cols=25 Identities=8% Similarity=0.085 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+++++.+.|+++||.++-|+.+.=
T Consensus 274 ~Q~~~~~~yA~~~GI~L~GDLPIgV 298 (745)
T PLN03236 274 RQLRRAAAHAAAKGVILKGDLPIGV 298 (745)
T ss_pred HHHHHHHHHHHHCCCEEEEEeecee
Confidence 5688889999999999999998753
No 133
>PF09260 DUF1966: Domain of unknown function (DUF1966); InterPro: IPR015340 Alpha-amylase is classified as family 13 of the glycosyl hydrolases and is present in archaea, bacteria, plants and animals. Alpha-amylase is an essential enzyme in alpha-glucan metabolism, acting to catalyse the hydrolysis of alpha-1,4-glucosidic bonds of glycogen, starch and related polysaccharides. Although all alpha-amylases possess the same catalytic function, they can vary with respect to sequence. In general, they are composed of three domains: a TIM barrel containing the active site residues and chloride ion-binding site (domain A), a long loop region inserted between the third beta strand and the alpha-helix of domain A that contains calcium-binding site(s) (domain B), and a C-terminal beta-sheet domain that appears to show some variability in sequence and length between amylases (domain C) []. Amylases have at least one conserved calcium-binding site, as calcium is essential for the stability of the enzyme. The chloride-binding functions to activate the enzyme, which acts by a two-step mechanism involving a catalytic nucleophile base (usually an Asp) and a catalytic proton donor (usually a Glu) that are responsible for the formation of the beta-linked glycosyl-enzyme intermediate. This domain is found in various fungal alpha-amylase proteins. Its exact function has not, as yet, been defined []. ; GO: 0004556 alpha-amylase activity, 0005509 calcium ion binding, 0016052 carbohydrate catabolic process; PDB: 2AAA_A 2GUY_A 2TAA_B 6TAA_A 2GVY_B 7TAA_A 3KWX_A.
Probab=68.68 E-value=7 Score=30.35 Aligned_cols=72 Identities=15% Similarity=0.071 Sum_probs=35.4
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCC---CcEEEECC-CC-CCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeE
Q 011993 393 YDSKFLAFTLHDNNGADIYLAFNAHD---FFVKVSLP-PP-PPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSS 467 (473)
Q Consensus 393 ~~~~v~a~~R~~~~~~~~lvv~N~~~---~~~~~~l~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~ 467 (473)
.++..+||.|...+.+.+.|+.|.+. ....+.++ .. ..+..+.+|++........ .....++|.--+=
T Consensus 4 ~d~~~~a~rKG~~g~qvi~vltN~Gs~~~~~~~~~v~~~~f~~g~~v~dVlsc~~~tv~~-------~G~l~v~m~~G~P 76 (91)
T PF09260_consen 4 SDDSTIAFRKGPDGSQVIVVLTNQGSNSGGSYTLTVPNTGFSAGTEVTDVLSCTSYTVDS-------NGTLTVPMSNGEP 76 (91)
T ss_dssp EETTEEEEEESSTTT-EEEEEE-S-T-T---EEEEESS----TT-EEEETTTTEEEE--T-------TS-EEEEESTT--
T ss_pred ECCcEEEEEeCCCCCEEEEEEeCCCcCCCCcEEEEEcCCCCCCCCEEEEEecCCEEEECC-------CCEEEEEEcCCce
Confidence 45689999997654456666666655 35667776 22 3456677777654332211 1234566665555
Q ss_pred EEEE
Q 011993 468 ILLE 471 (473)
Q Consensus 468 ~vl~ 471 (473)
+||.
T Consensus 77 ~Vl~ 80 (91)
T PF09260_consen 77 RVLY 80 (91)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5554
No 134
>cd02879 GH18_plant_chitinase_class_V The class V plant chitinases have a glycosyl hydrolase family 18 (GH18) domain, but lack the chitin-binding domain present in other GH18 enzymes. The GH18 domain of the class V chitinases has endochitinase activity in some cases and no catalytic activity in others. Included in this family is a lectin found in black locust (Robinia pseudoacacia) bark, which binds chitin but lacks chitinase activity. Also included is a chitinase-related receptor-like kinase (CHRK1) from tobacco (Nicotiana tabacum), with an N-terminal GH18 domain and a C-terminal kinase domain, which is thought to be part of a plant signaling pathway. The GH18 domain of CHRK1 is expressed extracellularly where it binds chitin but lacks chitinase activity.
Probab=67.95 E-value=14 Score=35.69 Aligned_cols=28 Identities=21% Similarity=0.412 Sum_probs=26.1
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFD 138 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~D 138 (473)
.+++.|+.+++.+..+++++|+||+-||
T Consensus 88 ~~~~~R~~fi~siv~~l~~~~fDGidiD 115 (299)
T cd02879 88 SDPTARKAFINSSIKVARKYGFDGLDLD 115 (299)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCceeec
Confidence 4589999999999999999999999999
No 135
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=67.21 E-value=59 Score=32.07 Aligned_cols=51 Identities=14% Similarity=0.112 Sum_probs=33.9
Q ss_pred CCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 18 GYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
|--++-...|+|.-...+.. ...-++.|++|++++|+.|-++++-+ +|.|.
T Consensus 48 glIi~~~~~v~~~g~~~~~~~~l~~d~~i~~lr~la~~vh~~ga~~~~QL--~H~G~ 102 (338)
T cd02933 48 GLIITEATQISPQGQGYPNTPGIYTDEQVEGWKKVTDAVHAKGGKIFLQL--WHVGR 102 (338)
T ss_pred ceEEeCceeeCccccCCCCCCccCCHHHHHHHHHHHHHHHhcCCeEEEEc--ccCcc
Confidence 34445555566553221111 12567899999999999999999865 68776
No 136
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=66.06 E-value=35 Score=33.90 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=59.2
Q ss_pred cCCCCCcccCCCCCCCCCCCC----CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceee
Q 011993 17 WGYSTINFFSPMSRYAAGGGG----PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV 92 (473)
Q Consensus 17 ~GY~~~d~~~vdp~~Gt~~~~----~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (473)
+|-=++-...|+|.-...+.. ...-++.++++++++|+.|-++++- ++|.|..... .+. . +. . .+
T Consensus 48 ~glIi~e~~~v~~~~~~~~~~~~~~~d~~i~~~~~l~~~vh~~G~~i~~Q--L~h~G~~~~~-~~~-~--~~--~---~~ 116 (353)
T cd04735 48 VGMVITGATYVSPSGIGFEGGFSADDDSDIPGLRKLAQAIKSKGAKAILQ--IFHAGRMANP-ALV-P--GG--D---VV 116 (353)
T ss_pred CCEEEECceEECcccCcCCCCceecChhhhHHHHHHHHHHHhCCCeEEEE--ecCCCCCCCc-ccc-C--CC--c---ee
Confidence 555556666666652221111 1145799999999999999999854 5787762210 000 0 00 0 01
Q ss_pred cCCCCcc-cccCCc-CCCCCCC-HHHHHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 93 DGTGQLL-NYAGCG-NTLNCNH-PVVMELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 93 ~~~~~~~-~~~~~~-~dln~~n-p~V~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
.+..... ...... ..+.... .++.+.+.++++.-. +-|+||+-|.+++
T Consensus 117 ~ps~~~~~~~~~~~p~~mt~~eI~~ii~~f~~aA~~a~-~aGfDgVeih~ah 167 (353)
T cd04735 117 SPSAIAAFRPGAHTPRELTHEEIEDIIDAFGEATRRAI-EAGFDGVEIHGAN 167 (353)
T ss_pred cCCCCcccCCCCCCCccCCHHHHHHHHHHHHHHHHHHH-HcCCCEEEEcccc
Confidence 1100000 000000 1111111 356666666777766 7899999999876
No 137
>COG1242 Predicted Fe-S oxidoreductase [General function prediction only]
Probab=63.18 E-value=25 Score=33.24 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
.+++.+-|..|++|||+|+-=+.++=.+ |-++.+++
T Consensus 167 ~~~y~dav~r~rkrgIkvc~HiI~GLPg--------------------------------------------E~~~~mle 202 (312)
T COG1242 167 FACYVDAVKRLRKRGIKVCTHLINGLPG--------------------------------------------ETRDEMLE 202 (312)
T ss_pred hHHHHHHHHHHHHcCCeEEEEEeeCCCC--------------------------------------------CCHHHHHH
Confidence 3888899999999999987654433221 45677888
Q ss_pred HHHHHHHhcCccEEEEeccccc
Q 011993 122 SLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~Daa~~l 143 (473)
.++.-+ +.||||+-+--.+-+
T Consensus 203 Tak~v~-~~~v~GIKlH~Lhvv 223 (312)
T COG1242 203 TAKIVA-ELGVDGIKLHPLHVV 223 (312)
T ss_pred HHHHHH-hcCCceEEEEEEEEe
Confidence 888666 899999999866655
No 138
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=63.04 E-value=59 Score=32.26 Aligned_cols=84 Identities=13% Similarity=0.090 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCC---HHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNH---PVVM 116 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~n---p~V~ 116 (473)
.-++.+++|++++|+.|-++++-+ +|.|.... ++.. ..+...........|. .... .++.
T Consensus 74 ~~i~~~~~l~~~vh~~g~~~~~QL--~h~G~~~~-~~~~-------------~~ps~~~~~~~~~~p~-~mt~~eI~~i~ 136 (353)
T cd02930 74 RQAAGHRLITDAVHAEGGKIALQI--LHAGRYAY-HPLC-------------VAPSAIRAPINPFTPR-ELSEEEIEQTI 136 (353)
T ss_pred HHHHHHHHHHHHHHHcCCEEEeec--cCCCCCCC-CCCC-------------cCCCCCCCCCCCCCCC-CCCHHHHHHHH
Confidence 568999999999999999999887 48776221 1100 0000000000000110 1111 3456
Q ss_pred HHHHHHHHHHHHhcCccEEEEeccc
Q 011993 117 ELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
+.+.+.++.-. +-|+||+-|-+++
T Consensus 137 ~~f~~aA~~a~-~aGfDgVeih~ah 160 (353)
T cd02930 137 EDFARCAALAR-EAGYDGVEIMGSE 160 (353)
T ss_pred HHHHHHHHHHH-HcCCCEEEEeccc
Confidence 66666777655 7899999997654
No 139
>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases. It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....
Probab=62.42 E-value=7 Score=37.64 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=20.3
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEE
Q 011993 41 ASWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~ 63 (473)
++++++++.+.||++||+|.||.
T Consensus 143 s~~el~ai~~~a~~~gl~lhmDG 165 (290)
T PF01212_consen 143 SLEELRAISELAREHGLPLHMDG 165 (290)
T ss_dssp -HHHHHHHHHHHHHHT-EEEEEE
T ss_pred CHHHHHHHHHHHHhCceEEEEeh
Confidence 37999999999999999999997
No 140
>cd06565 GH20_GcnA-like Glycosyl hydrolase family 20 (GH20) catalytic domain of N-acetyl-beta-D-glucosaminidase (GcnA, also known as BhsA) and related proteins. GcnA is an exoglucosidase which cleaves N-acetyl-beta-D-galactosamine (NAG) and N-acetyl-beta-D-galactosamine residues from 4-methylumbelliferylated (4MU) substrates, as well as cleaving NAG from chito-oligosaccharides (i.e. NAG polymers). In contrast, sulfated forms of the substrate are unable to be cleaved and act instead as mild competitive inhibitors. Additionally, the enzyme is known to be poisoned by several first-row transition metals as well as by mercury. GcnA forms a homodimer with subunits comprised of three domains, an N-terminal zincin-like domain, this central catalytic GH20 domain, and a C-terminal alpha helical domain. The GH20 hexosaminidases are thought to act via a catalytic mechanism in which the catalytic nucleophile is not provided by solvent or the enzyme, but by the substrate itself.
Probab=62.01 E-value=20 Score=34.68 Aligned_cols=72 Identities=18% Similarity=0.142 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE-ecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDV-VYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~-V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
.+|+++|++-|.+|||.||=.+ +|.|+.. |++. +.|-...+. ......||-.+|++.+++.
T Consensus 59 ~~ei~ei~~yA~~~gI~vIPeid~pGH~~~------~l~~------~~~~~l~~~------~~~~~~l~~~~~~t~~fi~ 120 (301)
T cd06565 59 KEEIREIDDYAAELGIEVIPLIQTLGHLEF------ILKH------PEFRHLREV------DDPPQTLCPGEPKTYDFIE 120 (301)
T ss_pred HHHHHHHHHHHHHcCCEEEecCCCHHHHHH------HHhC------ccccccccc------CCCCCccCCCChhHHHHHH
Confidence 3999999999999999999765 3566553 2211 111000000 1112468899999999999
Q ss_pred HHHHHHHHhcC
Q 011993 121 DSLRHWVVEYH 131 (473)
Q Consensus 121 ~~~~~w~~~~g 131 (473)
+.+...++-+.
T Consensus 121 ~li~ev~~~f~ 131 (301)
T cd06565 121 EMIRQVLELHP 131 (301)
T ss_pred HHHHHHHHhCC
Confidence 99999995443
No 141
>PRK15452 putative protease; Provisional
Probab=60.97 E-value=36 Score=34.92 Aligned_cols=20 Identities=10% Similarity=0.112 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHCCCEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~Vil 61 (473)
.++|++.|+.||++|.+|++
T Consensus 45 ~edl~eav~~ah~~g~kvyv 64 (443)
T PRK15452 45 HENLALGINEAHALGKKFYV 64 (443)
T ss_pred HHHHHHHHHHHHHcCCEEEE
Confidence 39999999999999999987
No 142
>COG3345 GalA Alpha-galactosidase [Carbohydrate transport and metabolism]
Probab=60.48 E-value=11 Score=39.07 Aligned_cols=104 Identities=13% Similarity=0.147 Sum_probs=69.4
Q ss_pred CCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc
Q 011993 21 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN 100 (473)
Q Consensus 21 ~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (473)
.-|++.-...|++ .+..||++.|++|+.-=+=+.|--++. ++-.+..+ |+|++. .+|....
T Consensus 343 lGDWlv~seKfPs----------giE~li~~I~e~Gl~fGIWlePemvs~---dSdlfrqH-----PDWvvk-~~G~p~~ 403 (687)
T COG3345 343 LGDWLVNSEKFPS----------GIEELIEAIAENGLIFGIWLEPEMVSE---DSDLFRQH-----PDWVVK-VNGYPLM 403 (687)
T ss_pred hhceecchhhccc----------cHHHHHHHHHHcCCccceeecchhccc---chHHHhhC-----CCeEEe-cCCcccc
Confidence 3355555555554 477889999999999877777766666 55555444 899988 4555554
Q ss_pred ccCCcCCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 101 YAGCGNTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 101 ~~~~~~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
..-.|--|+..||.|..++.+.+..-+-.--||=+|-|.-.++
T Consensus 404 ~~Rnqyvl~~s~p~vv~~l~~~l~qll~~~~v~ylkwdmnr~l 446 (687)
T COG3345 404 AGRNQYVLWLSNPIVVLDLSEDLVQLLLFHLVSYLKWDMNREL 446 (687)
T ss_pred ccccchhhhccChHHHHHhhhHHHHHHHhhhHHHHHHHhCcce
Confidence 4444666889999999888887665553445555555544443
No 143
>PF14701 hDGE_amylase: glucanotransferase domain of human glycogen debranching enzyme
Probab=59.75 E-value=15 Score=37.07 Aligned_cols=37 Identities=16% Similarity=0.189 Sum_probs=30.0
Q ss_pred cCCCCCC-----CHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 105 GNTLNCN-----HPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 105 ~~dln~~-----np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
+..|.|. ||.++++|.+..+.-.+ =++|||||-.+--
T Consensus 363 cVKLRYG~~peDsP~LW~~M~~Yt~~~A~--iF~G~RiDNCHST 404 (423)
T PF14701_consen 363 CVKLRYGSKPEDSPFLWKHMKEYTELMAK--IFHGFRIDNCHST 404 (423)
T ss_pred eeeecCCCCCCCCHHHHHHHHHHHHHHHH--hcCeeeeecCCCC
Confidence 4567766 49999999999999885 6899999977743
No 144
>COG3469 Chitinase [Carbohydrate transport and metabolism]
Probab=57.86 E-value=94 Score=28.99 Aligned_cols=58 Identities=26% Similarity=0.457 Sum_probs=41.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
-.|||+=|.++.+.|=.|+|-+ +.++ .| ..|+-.. -+.+..
T Consensus 84 daeFr~~v~aLnaeGkavllsL-----GGAd-gh------------------------------IeL~~~q---E~~fv~ 124 (332)
T COG3469 84 DAEFRAQVGALNAEGKAVLLSL-----GGAD-GH------------------------------IELKAGQ---EQAFVN 124 (332)
T ss_pred HHHHHHHHHHhhccCcEEEEEc-----cCcc-ce------------------------------EEeccch---HHHHHH
Confidence 5899999999999999999876 2211 11 1233322 334566
Q ss_pred HHHHHHHhcCccEEEEe
Q 011993 122 SLRHWVVEYHVDGFRFD 138 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~D 138 (473)
.+...+++||+||+-+|
T Consensus 125 eiirlietyGFDGLDiD 141 (332)
T COG3469 125 EIIRLIETYGFDGLDID 141 (332)
T ss_pred HHHHHHHHhCCCccccc
Confidence 67778889999999999
No 145
>PF15640 Tox-MPTase4: Metallopeptidase toxin 4
Probab=57.81 E-value=14 Score=30.10 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEE
Q 011993 40 KASWEFKEMVKALHGAGIEVILD 62 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD 62 (473)
+.+.|++.|-+.+.++||+|++|
T Consensus 19 ~s~~d~k~~kk~m~~~gIkV~Id 41 (132)
T PF15640_consen 19 MSVKDIKNFKKEMGKRGIKVKID 41 (132)
T ss_pred eeHHHHHHHHHHHHhCCcEEEEC
Confidence 66899999999999999999999
No 146
>PLN02229 alpha-galactosidase
Probab=57.51 E-value=40 Score=34.20 Aligned_cols=71 Identities=3% Similarity=-0.212 Sum_probs=43.0
Q ss_pred CcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCC---CCCC---CcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEE
Q 011993 395 SKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP---PPKR---QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSI 468 (473)
Q Consensus 395 ~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~---~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~ 468 (473)
+.+-++.|...++..+++++|.+++++++.++.. ..+. ..+++-...... ........++|+|.+++
T Consensus 341 ~~~~vW~~~L~~g~~aValfN~~~~~~~v~v~~~~lGl~~~~~~~VrDLW~~~dlg-------~~~~~~~~~~v~~Hg~~ 413 (427)
T PLN02229 341 GCQQVWAGPLSGDRLVVALWNRCSEPATITASWDVIGLESSISVSVRDLWKHKDLS-------ENVVGSFGAQVDAHDCH 413 (427)
T ss_pred CceEEEEEECCCCCEEEEEEeCCCCCEEEEEEHHHcCCCCCCceEEEECCCCCccC-------ccccceEEEEECCCeEE
Confidence 4578888887656678899999988887775532 1111 122333221110 01123347899999999
Q ss_pred EEEe
Q 011993 469 LLEA 472 (473)
Q Consensus 469 vl~~ 472 (473)
+|+.
T Consensus 414 l~rl 417 (427)
T PLN02229 414 MYIF 417 (427)
T ss_pred EEEE
Confidence 9975
No 147
>cd06543 GH18_PF-ChiA-like PF-ChiA is an uncharacterized chitinase found in the hyperthermophilic archaeon Pyrococcus furiosus with a glycosyl hydrolase family 18 (GH18) catalytic domain as well as a cellulose-binding domain. Members of this domain family are found not only in archaea but also in eukaryotes and prokaryotes. PF-ChiA exhibits hydrolytic activity toward both colloidal and crystalline (beta/alpha) chitins at high temperature.
Probab=55.86 E-value=48 Score=31.97 Aligned_cols=59 Identities=19% Similarity=0.227 Sum_probs=41.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHHH
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILDS 122 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~~ 122 (473)
..+.+-|++++++|.+|++-+ |.. .+..+ -. +..-++.+.+.
T Consensus 54 ~~~~~~i~~lk~~G~kViiS~-----GG~--~g~~~------------------------------~~-~~~~~~~~~~a 95 (294)
T cd06543 54 GWIKSDIAALRAAGGDVIVSF-----GGA--SGTPL------------------------------AT-SCTSADQLAAA 95 (294)
T ss_pred hhHHHHHHHHHHcCCeEEEEe-----cCC--CCCcc------------------------------cc-CcccHHHHHHH
Confidence 678888999999999999844 320 11000 00 24556777777
Q ss_pred HHHHHHhcCccEEEEec
Q 011993 123 LRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 123 ~~~w~~~~giDGfR~Da 139 (473)
+...++.||+||+=||-
T Consensus 96 ~~~~i~~y~~dgiDfDi 112 (294)
T cd06543 96 YQKVIDAYGLTHLDFDI 112 (294)
T ss_pred HHHHHHHhCCCeEEEec
Confidence 77788899999999993
No 148
>PF07555 NAGidase: beta-N-acetylglucosaminidase ; InterPro: IPR011496 This family consists of both eukaryotic and prokaryotic hyaluronidases. Human Q9HAR0 from SWISSPROT is expressed during meningioma []. Clostridium perfringens, P26831 from SWISSPROT, is involved in pathogenesis and is likely to act on connectivity tissue during gas gangrene []. It catalyses the random hydrolysis of 1->4-linkages between N-acetyl-beta-D-glucosamine and D-glucuronate residues in hyaluronate.; PDB: 2WB5_B 2V5C_B 2VUR_A 2V5D_A 2YDS_A 2CBI_A 2XPK_A 2CBJ_B 2J62_A 2X0Y_A ....
Probab=54.90 E-value=43 Score=32.47 Aligned_cols=58 Identities=14% Similarity=0.248 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
+-+++|++||++|++.|++.+.=+ |.+. ++.+..++..+.|
T Consensus 53 ~el~~l~~L~~~a~~~~V~Fv~ai---sPg~------------------------------------~~~~s~~~d~~~L 93 (306)
T PF07555_consen 53 EELAELKELADAAKANGVDFVYAI---SPGL------------------------------------DICYSSEEDFEAL 93 (306)
T ss_dssp HHHHHHHHHHHHHHHTT-EEEEEE---BGTT------------------------------------T--TSHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEE---Cccc------------------------------------ccccCcHHHHHHH
Confidence 447999999999999999998876 3332 2234457778888
Q ss_pred HHHHHHHHHhcCccEEEE
Q 011993 120 LDSLRHWVVEYHVDGFRF 137 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~ 137 (473)
++=+.... +.||.-|-|
T Consensus 94 ~~K~~ql~-~lGvr~Fai 110 (306)
T PF07555_consen 94 KAKFDQLY-DLGVRSFAI 110 (306)
T ss_dssp HHHHHHHH-CTT--EEEE
T ss_pred HHHHHHHH-hcCCCEEEE
Confidence 88888777 899997765
No 149
>TIGR03356 BGL beta-galactosidase.
Probab=51.53 E-value=37 Score=34.72 Aligned_cols=60 Identities=17% Similarity=0.075 Sum_probs=42.9
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
+.++-.+++|++|.++||++|+++. |.. .| .|.... + -|.||++.+.+
T Consensus 91 ~~~~~y~~~i~~l~~~gi~pivtL~--Hfd-----~P-----------~~l~~~--------g------Gw~~~~~~~~f 138 (427)
T TIGR03356 91 KGLDFYDRLVDELLEAGIEPFVTLY--HWD-----LP-----------QALEDR--------G------GWLNRDTAEWF 138 (427)
T ss_pred HHHHHHHHHHHHHHHcCCeeEEeec--cCC-----cc-----------HHHHhc--------C------CCCChHHHHHH
Confidence 5688899999999999999999995 432 23 111000 1 25668888888
Q ss_pred HHHHHHHHHhcC
Q 011993 120 LDSLRHWVVEYH 131 (473)
Q Consensus 120 ~~~~~~w~~~~g 131 (473)
.+.++.-+++||
T Consensus 139 ~~ya~~~~~~~~ 150 (427)
T TIGR03356 139 AEYAAVVAERLG 150 (427)
T ss_pred HHHHHHHHHHhC
Confidence 888888887666
No 150
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=51.09 E-value=22 Score=33.35 Aligned_cols=21 Identities=5% Similarity=0.139 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.|+.|.+.|++.||.++-|+
T Consensus 66 ~gl~~L~~~~~~~Gl~~~Tev 86 (250)
T PRK13397 66 QGIRYLHEVCQEFGLLSVSEI 86 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEee
Confidence 899999999999999999987
No 151
>cd06548 GH18_chitinase The GH18 (glycosyl hydrolases, family 18) type II chitinases hydrolyze chitin, an abundant polymer of N-acetylglucosamine and have been identified in bacteria, fungi, insects, plants, viruses, and protozoan parasites. The structure of this domain is an eight-stranded alpha/beta barrel with a pronounced active-site cleft at the C-terminal end of the beta-barrel.
Probab=50.93 E-value=19 Score=35.16 Aligned_cols=28 Identities=21% Similarity=0.337 Sum_probs=26.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFD 138 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~D 138 (473)
.+++.|+.+++.+..|++++|+||+-||
T Consensus 105 ~~~~~r~~Fi~siv~~l~~~~fDGidiD 132 (322)
T cd06548 105 ATEASRAKFADSAVDFIRKYGFDGIDID 132 (322)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCCeEEEC
Confidence 4589999999999999999999999999
No 152
>PF14509 GH97_C: Glycosyl-hydrolase 97 C-terminal, oligomerisation; PDB: 3A24_A 2JKP_A 2JKE_A 2D73_B 2ZQ0_B 2JKA_A.
Probab=50.31 E-value=63 Score=25.69 Aligned_cols=80 Identities=11% Similarity=0.145 Sum_probs=41.3
Q ss_pred CCCcEEEEEEecC-CCCeEEEEEeCCC-CcEEEECCCCCCCCCcEEEE--eCCCCCC---CCCCC-CCC--CCCCCeEEE
Q 011993 393 YDSKFLAFTLHDN-NGADIYLAFNAHD-FFVKVSLPPPPPKRQWFRVV--DTNLESP---DDIVP-EGA--AGTGSTYNL 462 (473)
Q Consensus 393 ~~~~v~a~~R~~~-~~~~~lvv~N~~~-~~~~~~l~~~~~~~~~~~~~--~~~~~~~---~~~~~-~~~--~~~~~~i~l 462 (473)
.....+++.|+.. ++.-++..+|... ..++++|+.+..+..|.-.+ +...... ..... ... .....+|.|
T Consensus 12 ~pGeyvviARr~~~G~~Wyvg~in~~~~r~i~l~L~FL~~g~~y~a~i~~D~~~a~~~~~~~~~~~~~~v~~~~~l~i~l 91 (103)
T PF14509_consen 12 YPGEYVVIARRKRDGDDWYVGGINGEDARTITLPLSFLDKGKKYTATIYTDGPDADYTNPEAYKIETRKVTSGDKLTITL 91 (103)
T ss_dssp ETTTEEEEEEEETTTTEEEEEEEE-TT-EEEEEEGCCS-TT--EEEEEEEE-TTTCTTCTT-EEEEEEEE-TT-EEEEEE
T ss_pred cCceEEEEEEEcCCCCCEEEEEeeCCCceEEEEECcccCCCCcEEEEEEEeCCcccccCCcceEEEEEEECCCCEEEEEE
Confidence 4556788888773 2778888888763 45677777665443455433 4432211 11111 111 123447899
Q ss_pred cCCeEEEEEe
Q 011993 463 SPYSSILLEA 472 (473)
Q Consensus 463 ~p~~~~vl~~ 472 (473)
.|.+..++..
T Consensus 92 ~~~GG~vi~~ 101 (103)
T PF14509_consen 92 APGGGFVIRI 101 (103)
T ss_dssp -TT-EEEEEE
T ss_pred eCCCcEEEEE
Confidence 9999888764
No 153
>PF09083 DUF1923: Domain of unknown function (DUF1923); InterPro: IPR015167 This domain is found in maltosyltransferases, adopting a secondary structure that consists of eight antiparallel beta-strands forming an open-sided 'jelly roll' Greek key beta-barrel. Their exact function is, as yet, unknown []. ; PDB: 1GJW_A 1GJU_A.
Probab=49.55 E-value=82 Score=21.49 Aligned_cols=55 Identities=18% Similarity=0.263 Sum_probs=30.4
Q ss_pred CCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEE
Q 011993 394 DSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 470 (473)
Q Consensus 394 ~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 470 (473)
+.++..|.... ++..++++.|.+.++..+.=.- .-+++|. ...++-|+|.++.+.
T Consensus 8 ~~dlv~ysyek-~g~k~viaanvgke~ke~sggr-vw~g~w~--------------------~~e~vilkp~efalv 62 (64)
T PF09083_consen 8 NKDLVMYSYEK-NGQKIVIAANVGKEPKEISGGR-VWNGRWS--------------------DKERVILKPFEFALV 62 (64)
T ss_dssp BTTEEEEEEEE-TTEEEEEEEE-SSS-EEEEEEE-EESSSEE--------------------EEEEEEE-TT-EEEE
T ss_pred ccceEEEEeec-CCcEEEEEeccCCCcccccCce-eecCccc--------------------ccceEEecceeEEEE
Confidence 44555555433 3789999999998877653100 0023343 236788999988765
No 154
>cd02876 GH18_SI-CLP Stabilin-1 interacting chitinase-like protein (SI-CLP) is a eukaryotic chitinase-like protein of unknown function that interacts with the endocytic/sorting transmembrane receptor stabilin-1 and is secreted from the lysosome. SI-CLP has a glycosyl hydrolase family 18 (GH18) domain but lacks a chitin-binding domain. The catalytic amino acids of the GH18 domain are not conserved in SI-CLP, similar to the chitolectins YKL-39, YKL-40, and YM1/2. Human SI-CLP is sorted to late endosomes and secretory lysosomes in alternatively activated macrophages.
Probab=49.29 E-value=20 Score=34.89 Aligned_cols=29 Identities=21% Similarity=0.271 Sum_probs=26.2
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEec
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~Da 139 (473)
.+|+.|+.+++.+..+++++|+||+-||.
T Consensus 88 ~~~~~R~~fi~s~~~~~~~~~~DGidiD~ 116 (318)
T cd02876 88 NDEQEREKLIKLLVTTAKKNHFDGIVLEV 116 (318)
T ss_pred cCHHHHHHHHHHHHHHHHHcCCCcEEEec
Confidence 45899999999999999999999999993
No 155
>smart00812 Alpha_L_fucos Alpha-L-fucosidase. O-Glycosyl hydrolases (EC 3.2.1.-) are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site PUBMED:. Because the fold of proteins is better conserved than their sequences, some of the families can be grouped in 'clans'. Family 29 encompasses alpha-L-fucosidases, which is a lysosomal enzyme responsible for hydrolyzing the alpha-1,6-linked fucose joined to the reducing-end N-acetylglucosamine of the carbohydrate moieties of glycoproteins. Deficiency of alpha-L-fucosidase results in the lysosomal storage disease fucosidosis.
Probab=48.78 E-value=22 Score=35.69 Aligned_cols=85 Identities=22% Similarity=0.205 Sum_probs=50.9
Q ss_pred CCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCccc
Q 011993 21 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLN 100 (473)
Q Consensus 21 ~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (473)
.++|..++...+. +-+++|+++|+++||++-+= |... -|. ++.|-...
T Consensus 115 ~t~~n~~~~~pkr---------Div~el~~A~rk~Glk~G~Y----~S~~-----DW~-------~p~y~~~~------- 162 (384)
T smart00812 115 YSNWNAVDTGPKR---------DLVGELADAVRKRGLKFGLY----HSLF-----DWF-------NPLYAGPT------- 162 (384)
T ss_pred CCCCcccCCCCCc---------chHHHHHHHHHHcCCeEEEE----cCHH-----HhC-------CCcccccc-------
Confidence 4567677765544 89999999999999999982 2111 111 01221000
Q ss_pred ccCCcCCCCCCCHHHHHHH---HHHHHHHHHhcCccEEEEecc
Q 011993 101 YAGCGNTLNCNHPVVMELI---LDSLRHWVVEYHVDGFRFDLA 140 (473)
Q Consensus 101 ~~~~~~dln~~np~V~~~i---~~~~~~w~~~~giDGfR~Daa 140 (473)
..... ....+.-.+++ ..=++-.+.+||-|.+=+|..
T Consensus 163 -~~~~~--~~~~~~~~~y~~~~~~Ql~ELit~Ygpd~lWfD~~ 202 (384)
T smart00812 163 -SSDED--PDNWPRFQEFVDDWLPQLRELVTRYKPDLLWFDGG 202 (384)
T ss_pred -ccccc--cccchhHHHHHHHHHHHHHHHHhcCCCceEEEeCC
Confidence 00000 11224455666 666677777899999999965
No 156
>PRK14582 pgaB outer membrane N-deacetylase; Provisional
Probab=48.42 E-value=1.2e+02 Score=32.93 Aligned_cols=38 Identities=18% Similarity=0.058 Sum_probs=32.0
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 106 NTLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 106 ~dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
..|+-.+|+||+.|.+++.-.++.+.|||+-+|-=..+
T Consensus 433 ~rl~P~~pe~r~~i~~i~~dla~~~~~dGilf~Dd~~l 470 (671)
T PRK14582 433 RRLSPFDDRVRAQVGMLYEDLAGHAAFDGILFHDDAVL 470 (671)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHHhCCCceEEecccccc
Confidence 34777889999999999999998889999999943333
No 157
>cd06549 GH18_trifunctional GH18 domain of an uncharacterized family of bacterial proteins, which share a common three-domain architecture: an N-terminal glycosyl hydrolase family 18 (GH18) domain, a glycosyl transferase family 2 domain, and a C-terminal polysaccharide deacetylase domain.
Probab=48.33 E-value=21 Score=34.49 Aligned_cols=51 Identities=10% Similarity=0.206 Sum_probs=36.1
Q ss_pred CCCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 110 CNHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 110 ~~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
..+|+.|+.+++.+..+++++|+||+-||-- .+... .......++++++..
T Consensus 83 l~~~~~R~~fi~~iv~~~~~~~~dGidiD~E-~~~~~---d~~~~~~fl~eL~~~ 133 (298)
T cd06549 83 LADPSARAKFIANIAAYLERNQADGIVLDFE-ELPAD---DLPKYVAFLSELRRR 133 (298)
T ss_pred hcCHHHHHHHHHHHHHHHHHhCCCCEEEecC-CCChh---HHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999953 22111 112345577777664
No 158
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=47.34 E-value=16 Score=33.90 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
..++++++++++||+.||+||+...+..-.
T Consensus 109 ~~~~~i~~v~~~~~~~gl~vIlE~~l~~~~ 138 (236)
T PF01791_consen 109 EVIEEIAAVVEECHKYGLKVILEPYLRGEE 138 (236)
T ss_dssp HHHHHHHHHHHHHHTSEEEEEEEECECHHH
T ss_pred HHHHHHHHHHHHHhcCCcEEEEEEecCchh
Confidence 457899999999999999999997665533
No 159
>smart00636 Glyco_18 Glycosyl hydrolase family 18.
Probab=47.31 E-value=23 Score=34.67 Aligned_cols=52 Identities=17% Similarity=0.312 Sum_probs=34.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhc
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
.+++.|+.+++.+..|++++|.||+-||-- ...... ........++++++..
T Consensus 87 ~~~~~r~~fi~~i~~~~~~~~~DGidiDwE-~~~~~~-~d~~~~~~ll~~lr~~ 138 (334)
T smart00636 87 SDPASRKKFIDSIVSFLKKYGFDGIDIDWE-YPGARG-DDRENYTALLKELREA 138 (334)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCeEEECCc-CCCCCc-cHHHHHHHHHHHHHHH
Confidence 458999999999999999999999999932 221100 0112344567776653
No 160
>COG3934 Endo-beta-mannanase [Carbohydrate transport and metabolism]
Probab=46.92 E-value=36 Score=34.71 Aligned_cols=29 Identities=10% Similarity=0.247 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc--cccC
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYN--HTNE 70 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~N--H~~~ 70 (473)
++=+..|++.|..++|+|++=++.+ |||.
T Consensus 66 ~~y~~~fla~a~~l~lkvlitlivg~~hmgg 96 (587)
T COG3934 66 VWYAAWFLAPAGYLDLKVLITLIVGLKHMGG 96 (587)
T ss_pred HHHHHHHhhhcccCcceEEEEEeecccccCc
Confidence 6889999999999999999999999 9997
No 161
>cd02872 GH18_chitolectin_chitotriosidase This conserved domain family includes a large number of catalytically inactive chitinase-like lectins (chitolectins) including YKL-39, YKL-40 (HCGP39), YM1, oviductin, and AMCase (acidic mammalian chitinase), as well as catalytically active chitotriosidases. The conserved domain is an eight-stranded alpha/beta barrel fold belonging to the family 18 glycosyl hydrolases. The fold has a pronounced active-site cleft at the C-terminal end of the beta-barrel. The chitolectins lack a key active site glutamate (the proton donor required for hydrolytic activity) but retain highly conserved residues involved in oligosaccharide binding. Chitotriosidase is a chitinolytic enzyme expressed in maturing macrophages, which suggests that it plays a part in antimicrobial defense. Chitotriosidase hydrolyzes chitotriose, as well as colloidal chitin to yield chitobiose and is therefore considered an exochitinase. Chitotriosidase occurs in two major forms, the la
Probab=46.69 E-value=22 Score=35.33 Aligned_cols=28 Identities=21% Similarity=0.407 Sum_probs=25.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFD 138 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~D 138 (473)
.+++.|+.+++.+..|++++|+||+-||
T Consensus 92 ~~~~~r~~fi~~iv~~l~~~~~DGidiD 119 (362)
T cd02872 92 ASPENRKTFIKSAIAFLRKYGFDGLDLD 119 (362)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeeee
Confidence 4588999999999999999999999999
No 162
>COG0041 PurE Phosphoribosylcarboxyaminoimidazole (NCAIR) mutase [Nucleotide transport and metabolism]
Probab=43.47 E-value=26 Score=29.89 Aligned_cols=21 Identities=19% Similarity=0.243 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.+.+++++|+++|++||+=.
T Consensus 44 e~m~~ya~~a~~~g~~viIAg 64 (162)
T COG0041 44 EKMFEYAEEAEERGVKVIIAG 64 (162)
T ss_pred HHHHHHHHHHHHCCCeEEEec
Confidence 889999999999999999864
No 163
>PRK09852 cryptic 6-phospho-beta-glucosidase; Provisional
Probab=43.46 E-value=69 Score=33.25 Aligned_cols=41 Identities=10% Similarity=0.124 Sum_probs=29.6
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.|-|. |+++..-++.++=.++||++|+++||.+|+.+- |..
T Consensus 96 Ri~P~-g~~~~~n~~~~~~Y~~~i~~l~~~gi~p~VtL~--H~~ 136 (474)
T PRK09852 96 RLFPQ-GDELTPNQQGIAFYRSVFEECKKYGIEPLVTLC--HFD 136 (474)
T ss_pred eeeeC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--CCC
Confidence 45554 332222347889999999999999999998874 544
No 164
>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]
Probab=43.11 E-value=22 Score=36.05 Aligned_cols=33 Identities=18% Similarity=0.178 Sum_probs=28.9
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEe
Q 011993 24 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 24 ~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V 64 (473)
+..+....|+ ..+++++++.||++|..|++|.+
T Consensus 168 is~vSn~tG~--------~~pv~~I~~la~~~ga~v~VDaa 200 (405)
T COG0520 168 LSHVSNVTGT--------VNPVKEIAELAHEHGALVLVDAA 200 (405)
T ss_pred EECccccccc--------cchHHHHHHHHHHcCCEEEEECc
Confidence 4466777899 59999999999999999999986
No 165
>PF00704 Glyco_hydro_18: Glycosyl hydrolases family 18; InterPro: IPR001223 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Some members of this family, GH18 from CAZY, belong to the chitinase class II group which includes chitinase, chitodextrinase and the killer toxin of Kluyveromyces lactis. The chitinases hydrolyse chitin oligosaccharides. The family also includes various glycoproteins from mammals; cartilage glycoprotein and the oviduct-specific glycoproteins are two examples.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1ITX_A 3ALG_A 3ALF_A 1NAR_A 3QOK_A 3G6L_A 3G6M_A 2DT1_A 2B31_A 2O92_A ....
Probab=43.09 E-value=28 Score=34.01 Aligned_cols=52 Identities=15% Similarity=0.321 Sum_probs=33.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHh
Q 011993 112 HPVVMELILDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 112 np~V~~~i~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+++-|+.+++.+..+++++|+||+-||-=................++++++.
T Consensus 96 ~~~~r~~f~~~i~~~l~~y~~DGidiD~e~~~~~~~~~~~~~~~~~l~~L~~ 147 (343)
T PF00704_consen 96 NPAKRQNFINNIVSFLKKYGFDGIDIDWEYPSSSGDPQDKDNYTAFLKELRK 147 (343)
T ss_dssp SHHHHHHHHHHHHHHHHHHT-SEEEEEESSTTSTSSTTHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHhhhhhhcccCcceeeeeeeeccccccchhhhhhhhhhhhhhh
Confidence 4788999999999999999999999994332211000011223456676665
No 166
>TIGR00666 PBP4 D-alanyl-D-alanine carboxypeptidase, serine-type, PBP4 family. In E. coli, this protein is known as penicillin binding protein 4 (dacB). A signal sequence is cleaved from a precursor form. The protein is described as periplasmic in E. coli (Gram-negative) and extracellular in Actinomadura R39 (Gram-positive). Unlike some other proteins with similar activity, it does not form transpeptidation. It is not essential for viability. This family is related to class A beta-lactamases.
Probab=42.25 E-value=88 Score=30.92 Aligned_cols=34 Identities=15% Similarity=0.286 Sum_probs=27.0
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE-EEeccccc
Q 011993 27 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL-DVVYNHTN 69 (473)
Q Consensus 27 vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~Vil-D~V~NH~~ 69 (473)
=||.|+. ++|.+|++++++.||+-|= |+++.-..
T Consensus 63 GDP~L~~---------~~L~~la~~l~~~Gi~~i~G~v~~D~s~ 97 (345)
T TIGR00666 63 GDPTLKR---------QDIRNLVATLKKSGVKQIDGNVLVDTSA 97 (345)
T ss_pred cCCCcCH---------HHHHHHHHHHHHcCCcEEEeeEEEEccc
Confidence 3888888 9999999999999998653 57665433
No 167
>cd06544 GH18_narbonin Narbonin is a plant 2S protein from the globulin fraction of narbon bean (Vicia narbonensis L.) cotyledons with unknown function. Narbonin has a glycosyl hydrolase family 18 (GH18) domain without the conserved catalytic residues and with no known enzymatic activity. Narbonin amounts to up to 3% of the total seed globulins of mature seeds and was thought to be a storage protein but was found to degrade too slowly during germination. This family also includes the VfNOD32 nodulin from Vicia faba.
Probab=39.88 E-value=55 Score=30.77 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHHHhcCccEEEEec
Q 011993 115 VMELILDSLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 115 V~~~i~~~~~~w~~~~giDGfR~Da 139 (473)
-++.+++.+..++++||+||+=||-
T Consensus 97 ~~~~fv~S~~~~l~~~~fDGiDiDw 121 (253)
T cd06544 97 WVSNAVSSLTSIIQTYNLDGIDIDY 121 (253)
T ss_pred HHHHHHHHHHHHHHHhCCCceeeec
Confidence 3455677788888899999999993
No 168
>cd02878 GH18_zymocin_alpha Zymocin, alpha subunit. Zymocin is a heterotrimeric enzyme that inhibits yeast cell cycle progression. The zymocin alpha subunit has a chitinase activity that is essential for holoenzyme action from the cell exterior while the gamma subunit contains the intracellular toxin responsible for G1 phase cell cycle arrest. The zymocin alpha and beta subunits are thought to act from the cell's exterior by docking to the cell wall-associated chitin, thus mediating gamma-toxin translocation. The alpha subunit has an eight-stranded TIM barrel fold similar to that of family 18 glycosyl hydrolases such as hevamine, chitolectin, and chitobiase.
Probab=39.81 E-value=32 Score=34.00 Aligned_cols=28 Identities=25% Similarity=0.579 Sum_probs=26.0
Q ss_pred CHHHHHHHHHHHHHHHHhcCccEEEEec
Q 011993 112 HPVVMELILDSLRHWVVEYHVDGFRFDL 139 (473)
Q Consensus 112 np~V~~~i~~~~~~w~~~~giDGfR~Da 139 (473)
+++.|+.+++.+..+++++|+||+-||-
T Consensus 88 ~~~~R~~Fi~si~~~~~~~~fDGidiDw 115 (345)
T cd02878 88 KPANRDTFANNVVNFVNKYNLDGVDFDW 115 (345)
T ss_pred CHHHHHHHHHHHHHHHHHcCCCceeecc
Confidence 5899999999999999999999999994
No 169
>PF12683 DUF3798: Protein of unknown function (DUF3798); InterPro: IPR024258 This entry represents functionally uncharacterised proteins that are found in bacteria. They are typically between 247 and 417 amino acids in length. Most of the proteins in this entry have an N-terminal lipoprotein attachment site. These proteins have distant similarity to periplasmic ligand binding families suggesting that this family has a similar role.; PDB: 3QI7_A.
Probab=38.53 E-value=68 Score=30.24 Aligned_cols=22 Identities=23% Similarity=0.570 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHHHhcCccE
Q 011993 113 PVVMELILDSLRHWVVEYHVDG 134 (473)
Q Consensus 113 p~V~~~i~~~~~~w~~~~giDG 134 (473)
+..+++|.+-+-.|+++||=|-
T Consensus 181 ~gaqqfIlE~vp~~i~kYGkdt 202 (275)
T PF12683_consen 181 AGAQQFILEDVPKWIKKYGKDT 202 (275)
T ss_dssp HHHHHHHHHHHHHHHHHH-S--
T ss_pred HHHHHHHHHHHHHHHHHhCCce
Confidence 7899999999999999999873
No 170
>COG1891 Uncharacterized protein conserved in archaea [Function unknown]
Probab=38.48 E-value=15 Score=32.02 Aligned_cols=24 Identities=33% Similarity=0.401 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
++++++||+.||++|+++-|---+
T Consensus 166 ~e~l~eFvd~Ah~hGL~~AlAGs~ 189 (235)
T COG1891 166 EEELEEFVDLAHEHGLEVALAGSL 189 (235)
T ss_pred HHHHHHHHHHHHHcchHHHhcccc
Confidence 589999999999999998775433
No 171
>COG2730 BglC Endoglucanase [Carbohydrate transport and metabolism]
Probab=38.38 E-value=82 Score=31.96 Aligned_cols=24 Identities=25% Similarity=0.369 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 44 EFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 44 dl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
=+.+.|+.|.++||+|++|+ |..+
T Consensus 117 ~ld~~I~~a~~~gi~V~iD~---H~~~ 140 (407)
T COG2730 117 ILDEAINWAKKLGIYVLIDL---HGYP 140 (407)
T ss_pred HHHHHHHHHHhcCeeEEEEe---cccC
Confidence 56778999999999999999 7665
No 172
>PRK15014 6-phospho-beta-glucosidase BglA; Provisional
Probab=37.74 E-value=1.1e+02 Score=31.69 Aligned_cols=74 Identities=12% Similarity=0.187 Sum_probs=48.0
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCG 105 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 105 (473)
.|-|. |+++..-++.++=.++||++|.++||+.|+.+. |..- | .|... .+++
T Consensus 94 RI~P~-G~~~~~N~~gl~~Y~~lid~l~~~GI~P~vTL~--H~dl-----P-----------~~L~~-------~yGG-- 145 (477)
T PRK15014 94 RIFPK-GDEAQPNEEGLKFYDDMFDELLKYNIEPVITLS--HFEM-----P-----------LHLVQ-------QYGS-- 145 (477)
T ss_pred eeccC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEee--CCCC-----C-----------HHHHH-------hcCC--
Confidence 66664 432222347889999999999999999999874 5432 2 11100 0122
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcC
Q 011993 106 NTLNCNHPVVMELILDSLRHWVVEYH 131 (473)
Q Consensus 106 ~dln~~np~V~~~i~~~~~~w~~~~g 131 (473)
|.|+++.+.+.+.++..+++||
T Consensus 146 ----W~n~~~~~~F~~Ya~~~f~~fg 167 (477)
T PRK15014 146 ----WTNRKVVDFFVRFAEVVFERYK 167 (477)
T ss_pred ----CCChHHHHHHHHHHHHHHHHhc
Confidence 4567888888887777776654
No 173
>PRK05967 cystathionine beta-lyase; Provisional
Probab=37.61 E-value=40 Score=34.08 Aligned_cols=27 Identities=19% Similarity=0.322 Sum_probs=24.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+.|++++++.||++|+.||+|-++..
T Consensus 164 ~v~dl~~I~~la~~~g~~vvVD~t~a~ 190 (395)
T PRK05967 164 EMQDIPAIAEAAHRHGAIVMMDNTWAT 190 (395)
T ss_pred cHHHHHHHHHHHHHhCCEEEEECCccC
Confidence 379999999999999999999998754
No 174
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=37.14 E-value=1.1e+02 Score=23.10 Aligned_cols=61 Identities=18% Similarity=0.054 Sum_probs=29.7
Q ss_pred eEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCC--CCCeEEEcCCeEEEEEe
Q 011993 409 DIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAG--TGSTYNLSPYSSILLEA 472 (473)
Q Consensus 409 ~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~i~l~p~~~~vl~~ 472 (473)
-.+.|.|.+++++.+..++ +.++..++........=..+.+... .-...+|+|-+.+.+..
T Consensus 4 ~~l~v~N~s~~~v~l~f~s---gq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~ 66 (82)
T PF12690_consen 4 FTLTVTNNSDEPVTLQFPS---GQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEE 66 (82)
T ss_dssp EEEEEEE-SSS-EEEEESS---S--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEE
T ss_pred EEEEEEeCCCCeEEEEeCC---CCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEE
Confidence 3577889999999999888 4555554442222211111222222 23478999999988763
No 175
>cd02873 GH18_IDGF The IDGF's (imaginal disc growth factors) are a family of growth factors identified in insects that include at least five members, some of which are encoded by genes in a tight cluster. The IDGF's have an eight-stranded alpha/beta barrel fold and are related to the glycosyl hydrolase family 18 (GH18) chitinases, but they have an amino acid substitution known to abolish chitinase catalytic activity. IDGFs may have evolved from chitinases to gain new functions as growth factors, interacting with cell surface glycoproteins involved in growth-promoting processes.
Probab=37.02 E-value=39 Score=34.40 Aligned_cols=28 Identities=14% Similarity=0.289 Sum_probs=25.7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCccEEEEe
Q 011993 111 NHPVVMELILDSLRHWVVEYHVDGFRFD 138 (473)
Q Consensus 111 ~np~V~~~i~~~~~~w~~~~giDGfR~D 138 (473)
.+++.|+.+++.+..|++++|+||+-||
T Consensus 101 ~~~~~R~~Fi~siv~~l~~~~fDGidiD 128 (413)
T cd02873 101 ESSESRNAFINSAHSLLKTYGFDGLDLA 128 (413)
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCeEee
Confidence 3589999999999999999999999999
No 176
>PRK05692 hydroxymethylglutaryl-CoA lyase; Provisional
Probab=36.70 E-value=1.2e+02 Score=29.04 Aligned_cols=77 Identities=17% Similarity=0.117 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
.++.+++.|+.|+++|++|..-+...-..+ . .+ ..--+++.
T Consensus 118 ~l~~~~~~v~~ak~~g~~v~~~i~~~~~~~---~---------------------------~~---------~~~~~~~~ 158 (287)
T PRK05692 118 SLERFEPVAEAAKQAGVRVRGYVSCVLGCP---Y---------------------------EG---------EVPPEAVA 158 (287)
T ss_pred HHHHHHHHHHHHHHcCCEEEEEEEEEecCC---C---------------------------CC---------CCCHHHHH
Confidence 456799999999999999887665432111 0 00 01135677
Q ss_pred HHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 121 DSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+.++... +.|+|.+++- ++..+ +|....+.++.+++
T Consensus 159 ~~~~~~~-~~G~d~i~l~DT~G~~------~P~~v~~lv~~l~~ 195 (287)
T PRK05692 159 DVAERLF-ALGCYEISLGDTIGVG------TPGQVRAVLEAVLA 195 (287)
T ss_pred HHHHHHH-HcCCcEEEeccccCcc------CHHHHHHHHHHHHH
Confidence 7888888 7899999884 55543 23345556666654
No 177
>PF13204 DUF4038: Protein of unknown function (DUF4038); PDB: 3KZS_D.
Probab=36.59 E-value=44 Score=32.15 Aligned_cols=34 Identities=21% Similarity=0.281 Sum_probs=22.1
Q ss_pred CcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 22 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 22 ~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
-||..++|.| .+-+.+.|+.|.++||.+ ++|+=|
T Consensus 77 ~d~~~~N~~Y----------F~~~d~~i~~a~~~Gi~~--~lv~~w 110 (289)
T PF13204_consen 77 FDFTRPNPAY----------FDHLDRRIEKANELGIEA--ALVPFW 110 (289)
T ss_dssp ---TT----H----------HHHHHHHHHHHHHTT-EE--EEESS-
T ss_pred cCCCCCCHHH----------HHHHHHHHHHHHHCCCeE--EEEEEE
Confidence 5777888887 899999999999999988 477766
No 178
>COG1105 FruK Fructose-1-phosphate kinase and related fructose-6-phosphate kinase (PfkB) [Carbohydrate transport and metabolism]
Probab=36.55 E-value=45 Score=32.27 Aligned_cols=22 Identities=32% Similarity=0.573 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~ 63 (473)
.+.+.+|++.|+++|.+|++|.
T Consensus 145 ~d~y~~li~~~~~~g~~vilD~ 166 (310)
T COG1105 145 PDAYAELIRILRQQGAKVILDT 166 (310)
T ss_pred HHHHHHHHHHHHhcCCeEEEEC
Confidence 4999999999999999999996
No 179
>COG1306 Uncharacterized conserved protein [Function unknown]
Probab=36.45 E-value=1.4e+02 Score=28.55 Aligned_cols=90 Identities=14% Similarity=0.178 Sum_probs=55.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCC------CCccceeecCCCCc---ccccCCcCCCCCCC
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGI------DNKVYYMVDGTGQL---LNYAGCGNTLNCNH 112 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~---~~~~~~~~dln~~n 112 (473)
+-|++-+|++|+++||.+|.=+|+=- +.-++.+ ++. ++..|-.. .+|.+ .....| .+--+
T Consensus 123 f~Di~~~iKkaKe~giY~IARiVvFK------D~~l~~~-n~fk~av~~~gKpw~~~-~ngaLrKe~~~ehW---Vd~y~ 191 (400)
T COG1306 123 FKDIEPVIKKAKENGIYAIARIVVFK------DTILAKE-NPFKIAVYKDGKPWKAF-TNGALRKESDGEHW---VDAYD 191 (400)
T ss_pred ccccHHHHHHHHhcCeEEEEEEEEee------eeeEEee-cCceEEEEcCCCcchhh-hcccccccccceee---ecccc
Confidence 57889999999999999999987643 2211111 000 00111000 00000 011112 23345
Q ss_pred HHHHHHHHHHHHHHHHhcCccEEEEeccccc
Q 011993 113 PVVMELILDSLRHWVVEYHVDGFRFDLASVL 143 (473)
Q Consensus 113 p~V~~~i~~~~~~w~~~~giDGfR~Daa~~l 143 (473)
+.+++|=+.+++.-+ ++|+|-+.+|-+.+-
T Consensus 192 ~~~WeYNvtIAKEa~-~fGfdEiQFDYIRFP 221 (400)
T COG1306 192 KNLWEYNVTIAKEAA-KFGFDEIQFDYIRFP 221 (400)
T ss_pred hhhhhhhHHHHHHHH-HcCccceeeeEEEcc
Confidence 899999999999999 899999999976653
No 180
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=35.16 E-value=43 Score=31.36 Aligned_cols=21 Identities=33% Similarity=0.634 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+++++|++.||.+||-|+..+
T Consensus 143 ~~l~el~~~A~~LGm~~LVEV 163 (254)
T COG0134 143 EQLEELVDRAHELGMEVLVEV 163 (254)
T ss_pred HHHHHHHHHHHHcCCeeEEEE
Confidence 679999999999999999998
No 181
>cd07940 DRE_TIM_IPMS 2-isopropylmalate synthase (IPMS), N-terminal catalytic TIM barrel domain. 2-isopropylmalate synthase (IPMS) catalyzes an aldol-type condensation of acetyl-CoA and 2-oxoisovalerate yielding 2-isopropylmalate and CoA, the first committed step in leucine biosynthesis. This family includes the Arabidopsis thaliana IPMS1 and IPMS2 proteins, the Glycine max GmN56 protein, and the Brassica insularis BatIMS protein. This family also includes a group of archeal IPMS-like proteins represented by the Methanocaldococcus jannaschii AksA protein. AksA catalyzes the condensation of alpha-ketoglutarate and acetyl-CoA to form trans-homoaconitate, one of 13 steps in the conversion of alpha-ketoglutarate and acetylCoA to alpha-ketosuberate, a precursor to coenzyme B and biotin. AksA also catalyzes the condensation of alpha-ketoadipate or alpha-ketopimelate with acetylCoA to form, respectively, the (R)-homocitrate homologs (R)-2-hydroxy-1,2,5-pentanetricarboxylic acid and (R)-2-h
Probab=34.69 E-value=1.8e+02 Score=27.54 Aligned_cols=71 Identities=13% Similarity=0.199 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
.++.+++.|+.|+++|++|.+-.. +.+. .-.+++.
T Consensus 112 ~~~~~~~~i~~a~~~G~~v~~~~~--~~~~-------------------------------------------~~~~~~~ 146 (268)
T cd07940 112 VLERAVEAVEYAKSHGLDVEFSAE--DATR-------------------------------------------TDLDFLI 146 (268)
T ss_pred HHHHHHHHHHHHHHcCCeEEEeee--cCCC-------------------------------------------CCHHHHH
Confidence 357788999999999998773110 1000 1134566
Q ss_pred HHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 121 DSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+.++... ++|+|.|++- ++..+ ++....+.++.+++
T Consensus 147 ~~~~~~~-~~G~~~i~l~DT~G~~------~P~~v~~lv~~l~~ 183 (268)
T cd07940 147 EVVEAAI-EAGATTINIPDTVGYL------TPEEFGELIKKLKE 183 (268)
T ss_pred HHHHHHH-HcCCCEEEECCCCCCC------CHHHHHHHHHHHHH
Confidence 7777777 7899999985 54443 23345556666655
No 182
>TIGR02127 pyrF_sub2 orotidine 5'-phosphate decarboxylase, subfamily 2. This model represents orotidine 5'-monophosphate decarboxylase, the PyrF protein of pyrimidine nucleotide biosynthesis. See TIGR01740 for a related but distinct subfamily of the same enzyme.
Probab=34.31 E-value=47 Score=31.40 Aligned_cols=29 Identities=17% Similarity=0.257 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.++.|+++++.++++|+.||+|+=+.-.+
T Consensus 71 gi~~l~~~~~~~~~~g~~VilD~K~~DIp 99 (261)
T TIGR02127 71 GFKALEEVIAHARSLGLPVLADVKRGDIG 99 (261)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEeeccChH
Confidence 35788888899999999999999666444
No 183
>PLN02692 alpha-galactosidase
Probab=34.23 E-value=5.2e+02 Score=26.30 Aligned_cols=73 Identities=5% Similarity=-0.102 Sum_probs=45.1
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCC---CCC-C--CcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCe
Q 011993 393 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPP---PPK-R--QWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYS 466 (473)
Q Consensus 393 ~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~---~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~ 466 (473)
..+.+-++.+...++...++++|.++.++++.++.. ... . ..++|-...... .......+++|+|++
T Consensus 330 ~~~~~~vW~k~l~~g~~aVal~N~~~~~~~i~~~~~~lgl~~~~~~~vrDLW~~~~~g-------~~~~~~~~~~v~~Hg 402 (412)
T PLN02692 330 MEGDLEIWAGPLSGYRVALLLLNRGPWRNSITANWDDIGIPANSIVEARDLWEHKTLK-------QHFVGNLTATVDSHA 402 (412)
T ss_pred ecCCeEEEEEECCCCCEEEEEEECCCCCEEEEEeHHHhCCCCCCceEEEECCCCCccC-------ccccceEEEEECCce
Confidence 345688888887656779999999998887776521 111 1 222333221110 011233578999999
Q ss_pred EEEEEe
Q 011993 467 SILLEA 472 (473)
Q Consensus 467 ~~vl~~ 472 (473)
+++|+.
T Consensus 403 ~~l~rl 408 (412)
T PLN02692 403 CKMYIL 408 (412)
T ss_pred EEEEEE
Confidence 999985
No 184
>PF01301 Glyco_hydro_35: Glycosyl hydrolases family 35; InterPro: IPR001944 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 35 GH35 from CAZY comprises enzymes with only one known activity; beta-galactosidase (3.2.1.23 from EC). Mammalian beta-galactosidase is a lysosomal enzyme (gene GLB1) which cleaves the terminal galactose from gangliosides, glycoproteins, and glycosaminoglycans and whose deficiency is the cause of the genetic disease Gm(1) gangliosidosis (Morquio disease type B).; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 3OGS_A 3OGV_A 3OGR_A 3OG2_A 1TG7_A 1XC6_A 3THC_C 3THD_D 3D3A_A 4E8D_B ....
Probab=34.06 E-value=35 Score=33.33 Aligned_cols=27 Identities=15% Similarity=0.136 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.||.+|++.|+++||.|||-.=+--++
T Consensus 63 ~dl~~f~~~a~~~gl~vilrpGpyi~a 89 (319)
T PF01301_consen 63 RDLDRFLDLAQENGLYVILRPGPYICA 89 (319)
T ss_dssp G-HHHHHHHHHHTT-EEEEEEES---T
T ss_pred hhHHHHHHHHHHcCcEEEecccceecc
Confidence 799999999999999999986444433
No 185
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=33.10 E-value=51 Score=31.18 Aligned_cols=21 Identities=24% Similarity=0.335 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.|+.|-+.|++.||.++.++
T Consensus 76 ~gl~~l~~~~~~~Gl~~~t~~ 96 (260)
T TIGR01361 76 EGLKLLRRAADEHGLPVVTEV 96 (260)
T ss_pred HHHHHHHHHHHHhCCCEEEee
Confidence 999999999999999999986
No 186
>PRK00125 pyrF orotidine 5'-phosphate decarboxylase; Reviewed
Probab=32.95 E-value=47 Score=31.71 Aligned_cols=29 Identities=21% Similarity=0.245 Sum_probs=24.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.++-|+++|+.++++|+.||+|+=.+-.+
T Consensus 71 G~~~l~~~i~~l~~~g~~VilD~K~~DI~ 99 (278)
T PRK00125 71 GLAQLERTIAYLREAGVLVIADAKRGDIG 99 (278)
T ss_pred hhhHHHHHHHHHHHCCCcEEEEeecCChH
Confidence 35678889999999999999999665544
No 187
>PF12681 Glyoxalase_2: Glyoxalase-like domain; PDB: 3G12_B 1JIF_B 1JIE_B 1QTO_A 3OXH_A 2PJS_A 2RBB_A 3SK1_B 3SK2_B 3RRI_A ....
Probab=32.72 E-value=61 Score=25.01 Aligned_cols=23 Identities=13% Similarity=0.209 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHHCCCEEEEEEec
Q 011993 43 WEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+++.++.+++.++|++++-+..-
T Consensus 65 ~dv~~~~~~l~~~G~~~~~~~~~ 87 (108)
T PF12681_consen 65 EDVDALYERLKELGAEIVTEPRD 87 (108)
T ss_dssp SHHHHHHHHHHHTTSEEEEEEEE
T ss_pred cCHHHHHHHHHHCCCeEeeCCEE
Confidence 89999999999999999877654
No 188
>PRK09028 cystathionine beta-lyase; Provisional
Probab=32.51 E-value=54 Score=33.09 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYN 66 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~N 66 (473)
+.+++++++.||++|+.||+|-++.
T Consensus 162 v~dl~~I~~la~~~g~~lvvD~t~a 186 (394)
T PRK09028 162 VQDVPTLSRIAHEHDIVVMLDNTWA 186 (394)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCcc
Confidence 7999999999999999999998764
No 189
>cd07938 DRE_TIM_HMGL 3-hydroxy-3-methylglutaryl-CoA lyase, catalytic TIM barrel domain. 3-hydroxy-3-methylglutaryl-CoA lyase (HMGL) catalyzes the cleavage of HMG-CoA to acetyl-CoA and acetoacetate, one of the terminal steps in ketone body generation and leucine degradation, and is a key enzyme in the pathway that supplies metabolic fuel to extrahepatic tissues. Mutations in HMGL cause a human autosomal recessive disorder called primary metabolic aciduria that affects ketogenesis and leucine catabolism and can be fatal due to an inability to tolerate hypoglycemia. HMGL has a TIM barrel domain with a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues that cap the core of the barrel. The cleavage of HMG-CoA requires the presence of a divalent cation like Mg2+ or Mn2+, and the reaction is thought to involve general acid/base catalysis. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropy
Probab=32.08 E-value=1.7e+02 Score=27.84 Aligned_cols=77 Identities=17% Similarity=0.198 Sum_probs=48.9
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHH
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELIL 120 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~ 120 (473)
.++..++.|+.|++.|+.|..-+......+ +. . +.-.++++
T Consensus 112 ~~~~~~~~v~~ak~~G~~v~~~i~~~f~~~---~~-----------------------------~-------~~~~~~~~ 152 (274)
T cd07938 112 SLERFEPVAELAKAAGLRVRGYVSTAFGCP---YE-----------------------------G-------EVPPERVA 152 (274)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEEEeEecCC---CC-----------------------------C-------CCCHHHHH
Confidence 356677888999999999887775554322 00 0 01145677
Q ss_pred HHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 121 DSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 121 ~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+.++... +.|+|.+++- ++..+ +|....+.++.+++
T Consensus 153 ~~~~~~~-~~Ga~~i~l~DT~G~~------~P~~v~~lv~~l~~ 189 (274)
T cd07938 153 EVAERLL-DLGCDEISLGDTIGVA------TPAQVRRLLEAVLE 189 (274)
T ss_pred HHHHHHH-HcCCCEEEECCCCCcc------CHHHHHHHHHHHHH
Confidence 7777777 7899999985 44443 23345556666654
No 190
>cd00609 AAT_like Aspartate aminotransferase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi
Probab=32.01 E-value=50 Score=31.93 Aligned_cols=31 Identities=23% Similarity=0.250 Sum_probs=26.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.+.++++++++.||++|+.||+|-+......
T Consensus 149 ~~~~~l~~l~~~~~~~~~~~ivD~a~~~~~~ 179 (350)
T cd00609 149 LSEEELEELAELAKKHGILIISDEAYAELVY 179 (350)
T ss_pred cCHHHHHHHHHHHHhCCeEEEEecchhhcee
Confidence 4478999999999999999999998765443
No 191
>PRK05939 hypothetical protein; Provisional
Probab=31.79 E-value=63 Score=32.66 Aligned_cols=24 Identities=8% Similarity=0.098 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.|++++++.||++|+.||+|-+.
T Consensus 147 v~dl~~I~~la~~~gi~livD~t~ 170 (397)
T PRK05939 147 VADLAGIGALCRERGLLYVVDNTM 170 (397)
T ss_pred HHhHHHHHHHHHHcCCEEEEECCc
Confidence 699999999999999999999764
No 192
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=31.40 E-value=59 Score=32.00 Aligned_cols=21 Identities=19% Similarity=0.346 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.|+.|.+.|++.||.++-++
T Consensus 144 ~gL~~L~~~~~~~Gl~v~tev 164 (335)
T PRK08673 144 EGLKLLAEAREETGLPIVTEV 164 (335)
T ss_pred HHHHHHHHHHHHcCCcEEEee
Confidence 999999999999999999987
No 193
>cd07944 DRE_TIM_HOA_like 4-hydroxy-2-oxovalerate aldolase-like, N-terminal catalytic TIM barrel domain. This family of bacterial enzymes is sequence-similar to 4-hydroxy-2-oxovalerate aldolase (HOA) but its exact function is unknown. This family includes the Bacteroides vulgatus Bvu_2661 protein and belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center containing a divalent cation-binding site formed by a cluster of invariant residues t
Probab=31.03 E-value=2.3e+02 Score=26.74 Aligned_cols=72 Identities=19% Similarity=0.176 Sum_probs=44.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
..++.++++|+.|+++|++|.+-+.--.. + -.+++
T Consensus 106 ~~~~~~~~~i~~ak~~G~~v~~~~~~a~~-----------------------------------------~----~~~~~ 140 (266)
T cd07944 106 HEFDEALPLIKAIKEKGYEVFFNLMAISG-----------------------------------------Y----SDEEL 140 (266)
T ss_pred ccHHHHHHHHHHHHHCCCeEEEEEEeecC-----------------------------------------C----CHHHH
Confidence 34678888888888888877655532211 0 12445
Q ss_pred HHHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 120 LDSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
.+.++.-. +.|+|.|++- ++..+. |....+.++.+++
T Consensus 141 ~~~~~~~~-~~g~~~i~l~DT~G~~~------P~~v~~lv~~l~~ 178 (266)
T cd07944 141 LELLELVN-EIKPDVFYIVDSFGSMY------PEDIKRIISLLRS 178 (266)
T ss_pred HHHHHHHH-hCCCCEEEEecCCCCCC------HHHHHHHHHHHHH
Confidence 66666666 7899999984 555442 3344555666554
No 194
>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]
Probab=31.00 E-value=44 Score=33.16 Aligned_cols=29 Identities=34% Similarity=0.406 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccCC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNEA 71 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~~ 71 (473)
+-|+++.+.||++||-||.|=|+.|+.-+
T Consensus 219 ~HL~kiae~A~klgi~vIaDEVY~~~vfg 247 (447)
T KOG0259|consen 219 DHLKKIAETAKKLGIMVIADEVYGHTVFG 247 (447)
T ss_pred HHHHHHHHHHHHhCCeEEehhhcceeecC
Confidence 77999999999999999999999999873
No 195
>COG2876 AroA 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) synthase [Amino acid transport and metabolism]
Probab=30.99 E-value=83 Score=29.61 Aligned_cols=21 Identities=24% Similarity=0.362 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+-|+.|.+++++.|+-|+-.+
T Consensus 96 ~gL~~l~~a~~~~Gl~vvtEv 116 (286)
T COG2876 96 EGLKLLKRAADETGLPVVTEV 116 (286)
T ss_pred HHHHHHHHHHHHcCCeeEEEe
Confidence 899999999999999999876
No 196
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=30.85 E-value=56 Score=30.88 Aligned_cols=21 Identities=29% Similarity=0.624 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+++++|++.||.+||.+|+|+
T Consensus 147 ~~l~~li~~a~~lGl~~lvev 167 (260)
T PRK00278 147 EQLKELLDYAHSLGLDVLVEV 167 (260)
T ss_pred HHHHHHHHHHHHcCCeEEEEe
Confidence 799999999999999999998
No 197
>cd00615 Orn_deC_like Ornithine decarboxylase family. This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.
Probab=30.44 E-value=36 Score=32.61 Aligned_cols=23 Identities=22% Similarity=0.590 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 011993 42 SWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V 64 (473)
+.+++++++.||++|+.|++|-+
T Consensus 169 ~~dl~~I~~~~~~~g~~livDeA 191 (294)
T cd00615 169 CYNLRKIVEEAHHRGLPVLVDEA 191 (294)
T ss_pred ecCHHHHHHHHHhcCCeEEEECc
Confidence 47899999999999999999987
No 198
>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]
Probab=30.08 E-value=51 Score=31.16 Aligned_cols=32 Identities=16% Similarity=0.240 Sum_probs=28.7
Q ss_pred ccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEE
Q 011993 24 FFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 24 ~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~ 63 (473)
.+.+|..||. +.|-+++.+-||+.|+-++|--
T Consensus 162 lTh~Dg~YGN--------l~Dakkva~ic~e~gvPlllN~ 193 (382)
T COG1103 162 LTHVDGEYGN--------LADAKKVAKICREYGVPLLLNC 193 (382)
T ss_pred EeccCCCcCC--------chhhHHHHHHHHHcCCceEeec
Confidence 3578999999 7999999999999999999864
No 199
>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase. This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.
Probab=30.06 E-value=60 Score=31.66 Aligned_cols=30 Identities=10% Similarity=0.101 Sum_probs=25.9
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
-..+++++|++.|+++|+.||+|-++-...
T Consensus 142 ~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 171 (330)
T TIGR01140 142 IPPETLLALAARLRARGGWLVVDEAFIDFT 171 (330)
T ss_pred CCHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence 457899999999999999999999876544
No 200
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=30.03 E-value=65 Score=31.86 Aligned_cols=21 Identities=19% Similarity=0.347 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.|+.|.+.+++.||.++-++
T Consensus 152 ~gl~~L~~~~~e~Gl~~~tev 172 (352)
T PRK13396 152 SALELLAAAREATGLGIITEV 172 (352)
T ss_pred HHHHHHHHHHHHcCCcEEEee
Confidence 999999999999999999987
No 201
>cd04795 SIS SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=29.82 E-value=72 Score=23.66 Aligned_cols=19 Identities=26% Similarity=0.254 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.+..++++.|+++|.++|.
T Consensus 61 ~~~~~~~~~a~~~g~~ii~ 79 (87)
T cd04795 61 EELLAALEIAKELGIPVIA 79 (87)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999874
No 202
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=29.63 E-value=66 Score=30.50 Aligned_cols=21 Identities=14% Similarity=0.106 Sum_probs=20.1
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.++.|.+.|++.||.++-++
T Consensus 78 ~gl~~l~~~~~~~Gl~~~te~ 98 (266)
T PRK13398 78 EGLKILKEVGDKYNLPVVTEV 98 (266)
T ss_pred HHHHHHHHHHHHcCCCEEEee
Confidence 999999999999999999987
No 203
>PF03711 OKR_DC_1_C: Orn/Lys/Arg decarboxylase, C-terminal domain; InterPro: IPR008286 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 3Q16_C 3N75_A 2X3L_A 2VYC_D.
Probab=29.37 E-value=69 Score=26.96 Aligned_cols=37 Identities=14% Similarity=0.315 Sum_probs=26.1
Q ss_pred cCceeeecccccccccCCCCCCCCCCCCCCCcccccccccchhHHHHHHHHHHHHhcccCCC
Q 011993 312 QGTPMMLMGDEYGHTRYGNNNSYGHDTAINNFQWGQLETKKNSHYRFFSEVIKFRQSRRVFG 373 (473)
Q Consensus 312 pG~P~iy~G~E~g~~~~~~~~~~~~~~~r~~~~W~~~~~~~~~l~~~~~~L~~lR~~~p~l~ 373 (473)
||||+|.-|+.+.... ..+.++++.|-+.-+..|-+.
T Consensus 87 PGIPll~pGE~it~~~-------------------------~~~i~yl~~l~~~~~~fpGf~ 123 (136)
T PF03711_consen 87 PGIPLLVPGERITEET-------------------------EEIIDYLLALQEFGAHFPGFE 123 (136)
T ss_dssp TTS-SB-TTEEB-STT-------------------------HHHHHHHHHHHHHHTCSTTS-
T ss_pred CCCcEECCccccccch-------------------------HHHHHHHHHHHHhCCcCcCCC
Confidence 5999999999875522 478889999888888777554
No 204
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=29.23 E-value=58 Score=30.05 Aligned_cols=26 Identities=15% Similarity=0.107 Sum_probs=21.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEec
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
...++++++++.||+.|+++|+|...
T Consensus 106 ~~~~~i~~v~~~~~~~g~~~iie~~~ 131 (235)
T cd00958 106 EMLEELARVAAEAHKYGLPLIAWMYP 131 (235)
T ss_pred HHHHHHHHHHHHHHHcCCCEEEEEec
Confidence 34568999999999999999997643
No 205
>COG1874 LacA Beta-galactosidase [Carbohydrate transport and metabolism]
Probab=29.19 E-value=1.6e+02 Score=32.00 Aligned_cols=59 Identities=20% Similarity=0.336 Sum_probs=43.8
Q ss_pred CCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEEEe
Q 011993 393 YDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILLEA 472 (473)
Q Consensus 393 ~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl~~ 472 (473)
..+.+.++.|... + ++++.|++.+.+.++++. .+++++ +... .....+|.|++++|+..
T Consensus 614 ~~~g~~~~~~~~~--~-~~~~~n~~~~~~~v~~~~-----~~~~l~-~~~~------------~~g~~~l~~~~~~i~~~ 672 (673)
T COG1874 614 VPPGVSVYRRTDG--E-YIFVFNFGSEFQTVTLPA-----EYTDLI-TATN------------LLGGLTLKPYEVRILDR 672 (673)
T ss_pred CCCceEEEeccCC--c-eEEEEeccccCcceeccc-----ceeeee-eeee------------eccccccccccceeecc
Confidence 3567888888653 3 999999999999999886 236666 3222 23678999999999864
No 206
>PF14488 DUF4434: Domain of unknown function (DUF4434)
Probab=28.94 E-value=57 Score=28.45 Aligned_cols=26 Identities=12% Similarity=0.243 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+-+..+.++|.+.||+|++-+-++.
T Consensus 64 ~d~l~~~L~~A~~~Gmkv~~Gl~~~~ 89 (166)
T PF14488_consen 64 VDLLEMILDAADKYGMKVFVGLYFDP 89 (166)
T ss_pred ccHHHHHHHHHHHcCCEEEEeCCCCc
Confidence 37788999999999999999885554
No 207
>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=28.78 E-value=48 Score=33.32 Aligned_cols=27 Identities=15% Similarity=0.329 Sum_probs=23.0
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+.|+.++++-||++|+-||+|=.+--
T Consensus 177 ~v~DI~~l~~la~~~g~~vvVDnTf~~ 203 (409)
T KOG0053|consen 177 KVPDIEKLARLAHKYGFLVVVDNTFGS 203 (409)
T ss_pred ccccHHHHHHHHhhCCCEEEEeCCcCc
Confidence 368999999999999999999965543
No 208
>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed
Probab=28.21 E-value=83 Score=31.68 Aligned_cols=30 Identities=10% Similarity=0.022 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
..+.+++|++-|+++|+-||+|=|..+++.
T Consensus 203 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 232 (403)
T PRK05093 203 TPEFLQGLRELCDQHNALLIFDEVQTGMGR 232 (403)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhCCCC
Confidence 468899999999999999999999887766
No 209
>PF04914 DltD_C: DltD C-terminal region; InterPro: IPR006998 The dlt operon (dltA to dltD) of Lactobacillus rhamnosus 7469 encodes four proteins responsible for the esterification of lipoteichoic acid (LTA) by D-alanine. These esters play an important role in controlling the net anionic charge of the poly (GroP) moiety of LTA. DltA and DltC encode the D-alanine-D-alanyl carrier protein ligase (Dcl) and D-alanyl carrier protein (Dcp), respectively. Whereas the functions of DltA and DltC are defined, the functions of DltB and DltD are unknown. In vitro assays showed that DltD bound Dcp for ligation with D-alanine by Dcl in the presence of ATP. In contrast, the homologue of Dcp, the Escherichia coli acyl carrier protein (ACP), involved in fatty acid biosynthesis, was not bound to DltD and thus was not ligated with D-alanine. DltD also catalyzed the hydrolysis of the mischarged D-alanyl-ACP. The hydrophobic N-terminal sequence of DltD was required for anchoring the protein in the membrane. It is hypothesized that this membrane-associated DltD facilitates the binding of Dcp and Dcl for ligation of Dcp with D-alanine and that the resulting D-alanyl-Dcp is translocated to the primary site of D-alanylation []. These sequences contain the C-terminal region of DltD.; PDB: 3BMA_C.
Probab=27.85 E-value=89 Score=26.05 Aligned_cols=56 Identities=9% Similarity=0.165 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
.+||+-|++.|++.|+.|++=++|=+ ..|. ++ .| + +.+.|+.+.+
T Consensus 35 y~Dl~l~L~~~k~~g~~~lfVi~PvN-------g~wy-dy--------------------tG----~---~~~~r~~~y~ 79 (130)
T PF04914_consen 35 YDDLQLLLDVCKELGIDVLFVIQPVN-------GKWY-DY--------------------TG----L---SKEMRQEYYK 79 (130)
T ss_dssp HHHHHHHHHHHHHTT-EEEEEE-----------HHHH-HH--------------------TT---------HHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCceEEEecCCc-------HHHH-HH--------------------hC----C---CHHHHHHHHH
Confidence 58899999999999999998665544 1122 11 11 1 2688999999
Q ss_pred HHHHHHHhcCc
Q 011993 122 SLRHWVVEYHV 132 (473)
Q Consensus 122 ~~~~w~~~~gi 132 (473)
-++.-+++.|+
T Consensus 80 kI~~~~~~~gf 90 (130)
T PF04914_consen 80 KIKYQLKSQGF 90 (130)
T ss_dssp HHHHHHHTTT-
T ss_pred HHHHHHHHCCC
Confidence 99999988887
No 210
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=27.69 E-value=75 Score=25.80 Aligned_cols=19 Identities=21% Similarity=0.293 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.++.+.++.||++|++||.
T Consensus 61 ~~~~~~~~~a~~~g~~vi~ 79 (128)
T cd05014 61 DELLNLLPHLKRRGAPIIA 79 (128)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999875
No 211
>PRK07050 cystathionine beta-lyase; Provisional
Probab=27.64 E-value=72 Score=32.17 Aligned_cols=26 Identities=15% Similarity=0.261 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.++++++++.||++|+.||+|-.+..
T Consensus 166 ~~di~~I~~ia~~~gi~livD~a~a~ 191 (394)
T PRK07050 166 VPDVPAITAAARARGVVTAIDNTYSA 191 (394)
T ss_pred HhhHHHHHHHHHHcCCEEEEECCccc
Confidence 69999999999999999999998655
No 212
>cd06502 TA_like Low-specificity threonine aldolase (TA). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.
Probab=27.50 E-value=55 Score=31.76 Aligned_cols=24 Identities=21% Similarity=0.196 Sum_probs=21.7
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEe
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V 64 (473)
..++++++++.||++|+.||+|-.
T Consensus 144 ~~~~l~~i~~~~~~~~~~livDea 167 (338)
T cd06502 144 PLDELKAISALAKENGLPLHLDGA 167 (338)
T ss_pred CHHHHHHHHHHHHHcCCeEeechH
Confidence 369999999999999999999964
No 213
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=27.50 E-value=91 Score=28.40 Aligned_cols=107 Identities=15% Similarity=0.116 Sum_probs=59.2
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
+..+-.++.+++||+.|..|++|+.-|..-. +--.|++.. + +++..+.. +.|.-...-..-...
T Consensus 90 A~~~TI~~~i~~A~~~~~~v~iDl~~~~~~~--~~~~~l~~~-g---vd~~~~H~----------g~D~q~~G~~~~~~~ 153 (217)
T COG0269 90 ADDATIKKAIKVAKEYGKEVQIDLIGVWDPE--QRAKWLKEL-G---VDQVILHR----------GRDAQAAGKSWGEDD 153 (217)
T ss_pred CCHHHHHHHHHHHHHcCCeEEEEeecCCCHH--HHHHHHHHh-C---CCEEEEEe----------cccHhhcCCCccHHH
Confidence 5578999999999999999999998777432 012233211 1 22222210 011100000010122
Q ss_pred HHHHHHHHHhcCccEEEEecccccccCCCCCCCCCHHHHHHHHhccccCCceEEecCCC
Q 011993 120 LDSLRHWVVEYHVDGFRFDLASVLCRGTDGSPLNAPPLIRAIAKDAILSRCKIIAEPWD 178 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~Daa~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~E~~~ 178 (473)
++.++.-. -.|+++-.+..|..+ .++.+.. .+++++++|-...
T Consensus 154 l~~ik~~~----~~g~~vAVaGGI~~~----------~i~~~~~--~~~~ivIvGraIt 196 (217)
T COG0269 154 LEKIKKLS----DLGAKVAVAGGITPE----------DIPLFKG--IGADIVIVGRAIT 196 (217)
T ss_pred HHHHHHhh----ccCceEEEecCCCHH----------HHHHHhc--CCCCEEEECchhc
Confidence 33344333 245899988888444 4666664 4578888877543
No 214
>TIGR03246 arg_catab_astC succinylornithine transaminase family. Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.
Probab=27.39 E-value=90 Score=31.41 Aligned_cols=30 Identities=13% Similarity=0.046 Sum_probs=26.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+.+.|++|.+.|+++|+-+|+|=|...++.
T Consensus 198 ~~~~l~~l~~lc~~~g~llI~DEv~tG~Gr 227 (397)
T TIGR03246 198 DPAFLKGLRELCDRHNALLIFDEVQTGVGR 227 (397)
T ss_pred CHHHHHHHHHHHHHcCCEEEEechhhcCCc
Confidence 468999999999999999999999877766
No 215
>cd08577 PI-PLCc_GDPD_SF_unchar3 Uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipaseand Glycerophosphodiester phosphodiesterases. This subfamily corresponds to a group of uncharacterized hypothetical proteins similar to the catalytic domains of Phosphoinositide-specific phospholipase C (PI-PLC), and glycerophosphodiester phosphodiesterases (GP-GDE), and also sphingomyelinases D (SMases D) and similar proteins. They hydrolyze the 3'-5' phosphodiester bonds in different substrates, utilizing a similar mechanism of general base and acid catalysis involving two conserved histidine residues.
Probab=27.02 E-value=70 Score=29.58 Aligned_cols=22 Identities=18% Similarity=0.335 Sum_probs=19.3
Q ss_pred chHHHHHHHHHHHHHCCCEEEE
Q 011993 40 KASWEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~Vil 61 (473)
.-++.++++|++||++|++|.+
T Consensus 182 ~q~~~l~~~v~~a~~~Gl~vr~ 203 (228)
T cd08577 182 DEKEKLKSIIDKAHARGKKVRF 203 (228)
T ss_pred HHHHHHHHHHHHHHHCCCEEEE
Confidence 5578899999999999999865
No 216
>PRK13237 tyrosine phenol-lyase; Provisional
Probab=26.90 E-value=66 Score=33.07 Aligned_cols=23 Identities=17% Similarity=0.289 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 011993 42 SWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V 64 (473)
+++++++.+-|+++||+|++|-.
T Consensus 197 ~~~m~~I~elA~~~Gl~Vi~DaA 219 (460)
T PRK13237 197 MANMRAVRELCDKHGIKVFFDAT 219 (460)
T ss_pred HHhHHHHHHHHHHcCCEEEEECc
Confidence 68999999999999999999974
No 217
>PLN03231 putative alpha-galactosidase; Provisional
Probab=26.79 E-value=2.3e+02 Score=28.16 Aligned_cols=33 Identities=12% Similarity=0.140 Sum_probs=29.3
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHhcCccEEEEecc
Q 011993 107 TLNCNHPVVMELILDSLRHWVVEYHVDGFRFDLA 140 (473)
Q Consensus 107 dln~~np~V~~~i~~~~~~w~~~~giDGfR~Daa 140 (473)
-+|...+..++++...++.+. +-|||=+-+|..
T Consensus 153 ~v~~~~~gaq~y~~~~a~~fA-~WGVDylK~D~c 185 (357)
T PLN03231 153 GVNTSSEGGKLFIQSLYDQYA-SWGIDFIKHDCV 185 (357)
T ss_pred cccccchhHHHHHHHHHHHHH-HhCCCEEeeccc
Confidence 367888999999999999999 899999999953
No 218
>cd07939 DRE_TIM_NifV Streptomyces rubellomurinus FrbC and related proteins, catalytic TIM barrel domain. FrbC (NifV) of Streptomyces rubellomurinus catalyzes the condensation of acetyl-CoA and alpha-ketoglutarate to form homocitrate and CoA, a reaction similar to one catalyzed by homocitrate synthase. The gene encoding FrbC is one of several genes required for the biosynthesis of FR900098, a potent antimalarial antibiotic. This protein is also required for assembly of the nitrogenase MoFe complex but its exact role is unknown. This family also includes the NifV proteins of Heliobacterium chlorum and Gluconacetobacter diazotrophicus, which appear to be orthologous to FrbC. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarbox
Probab=26.78 E-value=3e+02 Score=25.82 Aligned_cols=40 Identities=23% Similarity=0.365 Sum_probs=25.1
Q ss_pred HHHHHHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 117 ELILDSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+++.+.++... +.|+|.|++- ++..+. |....+.++.+++
T Consensus 139 ~~~~~~~~~~~-~~G~~~i~l~DT~G~~~------P~~v~~lv~~l~~ 179 (259)
T cd07939 139 DFLIEFAEVAQ-EAGADRLRFADTVGILD------PFTTYELIRRLRA 179 (259)
T ss_pred HHHHHHHHHHH-HCCCCEEEeCCCCCCCC------HHHHHHHHHHHHH
Confidence 55677777777 7899999985 455432 2334445555554
No 219
>PRK01278 argD acetylornithine transaminase protein; Provisional
Probab=26.72 E-value=82 Score=31.49 Aligned_cols=30 Identities=17% Similarity=0.133 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+.+.+++|++-|+++|+.||+|=|...++.
T Consensus 194 ~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~ 223 (389)
T PRK01278 194 PDEFLKGLRQLCDENGLLLIFDEVQCGMGR 223 (389)
T ss_pred CHHHHHHHHHHHHHcCCEEEEeccccCCCc
Confidence 458999999999999999999999876665
No 220
>KOG2584 consensus Dihydroorotase and related enzymes [Nucleotide transport and metabolism]
Probab=26.51 E-value=1.1e+02 Score=30.97 Aligned_cols=87 Identities=18% Similarity=0.117 Sum_probs=54.8
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCC--CCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHH
Q 011993 38 PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD--DANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVV 115 (473)
Q Consensus 38 ~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V 115 (473)
+...++||-.=-++|=.-|--.|+|+|++-.+..- .-..|..+.++..-++|-.+ -++-++++.|
T Consensus 81 G~ts~DdF~~GTkAAlaGGtTmiID~vlp~~~~slv~afe~wr~~Ad~k~cCDyglh-------------v~It~W~~~v 147 (522)
T KOG2584|consen 81 GMTSVDDFFQGTKAALAGGTTMIIDFVLPDKGTSLVEAFEKWREWADPKVCCDYGLH-------------VGITWWSPSV 147 (522)
T ss_pred CccchhhhhcccHHHhcCCceEEEEEecCCCCchHHHHHHHHHhhcCCceeeeeeee-------------EeeeecCcch
Confidence 34567999998999999999999999998764200 00122222221211232111 2355666888
Q ss_pred HHHHHHHHHHHHHhcCccEEEEeccc
Q 011993 116 MELILDSLRHWVVEYHVDGFRFDLAS 141 (473)
Q Consensus 116 ~~~i~~~~~~w~~~~giDGfR~Daa~ 141 (473)
.+.|.-.. +++||.+|-+++|.
T Consensus 148 ~eem~~l~----~ekGvnsF~~fmay 169 (522)
T KOG2584|consen 148 KEEMEILV----KEKGVNSFKFFMAY 169 (522)
T ss_pred HHHHHHHh----hhcCcceEEeeeee
Confidence 88765443 68999999999655
No 221
>TIGR01814 kynureninase kynureninase. This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.
Probab=26.22 E-value=55 Score=33.05 Aligned_cols=31 Identities=16% Similarity=0.224 Sum_probs=24.9
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEe
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V 64 (473)
.+...-|. +.+++++.+.||++|+.|++|.+
T Consensus 179 ~v~~~tG~--------~~~~~~i~~~~~~~g~~~~vD~a 209 (406)
T TIGR01814 179 GVQYYTGQ--------LFDMAAITRAAHAKGALVGFDLA 209 (406)
T ss_pred ccccccce--------ecCHHHHHHHHHHcCCEEEEEcc
Confidence 45555666 47899999999999999999965
No 222
>PF00218 IGPS: Indole-3-glycerol phosphate synthase; InterPro: IPR013798 Indole-3-glycerol phosphate synthase (4.1.1.48 from EC) (IGPS) catalyses the fourth step in the biosynthesis of tryptophan, the ring closure of 1-(2-carboxy-phenylamino)-1-deoxyribulose into indol-3-glycerol-phosphate. In some bacteria, IGPS is a single chain enzyme. In others, such as Escherichia coli, it is the N-terminal domain of a bifunctional enzyme that also catalyses N-(5'-phosphoribosyl)anthranilate isomerase (5.3.1.24 from EC) (PRAI) activity (see IPR001240 from INTERPRO), the third step of tryptophan biosynthesis. In fungi, IGPS is the central domain of a trifunctional enzyme that contains a PRAI C-terminal domain and a glutamine amidotransferase (2.4.2 from EC) (GATase) N-terminal domain (see IPR000991 from INTERPRO). A structure of the IGPS domain of the bifunctional enzyme from the mesophilic bacterium E. coli (eIGPS) has been compared with the monomeric indole-3-glycerol phosphate synthase from the hyperthermophilic archaeon Sulfolobus solfataricus (sIGPS). Both are single-domain (beta/alpha)8 barrel proteins, with one (eIGPS) or two (sIGPS) additional helices inserted before the first beta strand []. ; GO: 0004425 indole-3-glycerol-phosphate synthase activity; PDB: 1VC4_A 1PII_A 1JCM_P 1I4N_B 1J5T_A 3TSM_B 4FB7_A 3QJA_A 1JUL_A 2C3Z_A ....
Probab=26.20 E-value=71 Score=30.05 Aligned_cols=25 Identities=28% Similarity=0.623 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
++|++|++.||..||.+++.+ |...
T Consensus 145 ~~l~~l~~~a~~lGle~lVEV---h~~~ 169 (254)
T PF00218_consen 145 DQLEELLELAHSLGLEALVEV---HNEE 169 (254)
T ss_dssp HHHHHHHHHHHHTT-EEEEEE---SSHH
T ss_pred HHHHHHHHHHHHcCCCeEEEE---CCHH
Confidence 789999999999999999998 6543
No 223
>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional
Probab=26.19 E-value=96 Score=31.33 Aligned_cols=43 Identities=12% Similarity=-0.001 Sum_probs=31.1
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 27 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 27 vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
++|.+|+.+ ......+.|++|++-|+++|+-+|+|=|...++.
T Consensus 189 iEPv~~~gg-~~~~~~~~l~~l~~l~~~~~~llI~DEv~tG~gr 231 (406)
T PRK12381 189 VEPIQGEGG-VIPADKAFLQGLRELCDRHNALLIFDEVQTGVGR 231 (406)
T ss_pred EeCCcCCCC-CcCCCHHHHHHHHHHHHHcCCEEEEcchhhCCCC
Confidence 455565521 1113468999999999999999999999766655
No 224
>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=26.07 E-value=91 Score=31.25 Aligned_cols=26 Identities=19% Similarity=0.379 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
..+++++++.||++|+.||.|-+.-.
T Consensus 151 ~~dl~~I~~la~~~g~~livD~t~a~ 176 (377)
T TIGR01324 151 IQDIPAIAKAARNPGIVIMIDNTWAA 176 (377)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCCcc
Confidence 69999999999999999999987654
No 225
>TIGR02336 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase. Members of this family are found in phylogenetically diverse bacteria, including Clostridium perfringens (in the Firmicutes), Bifidobacterium longum and Propionibacterium acnes (in the Actinobacteria), and Vibrio vulnificus (in the Proteobacteria), most of which occur as mammalian pathogens or commensals. The nominal activity, 1,3-beta-galactosyl-N-acetylhexosamine phosphorylase (EC 2.4.1.211), varies somewhat from instance to instance in relative rates for closely related substrates.
Probab=26.01 E-value=1.8e+02 Score=31.31 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=36.3
Q ss_pred CCCCcEEEEEEecCCCCeEEEEEeCCCCcEEEECCCCCCCCCcEEEEeCCCCCCCCCCCCCCCCCCCeEEEcCCeEEEE
Q 011993 392 NYDSKFLAFTLHDNNGADIYLAFNAHDFFVKVSLPPPPPKRQWFRVVDTNLESPDDIVPEGAAGTGSTYNLSPYSSILL 470 (473)
Q Consensus 392 ~~~~~v~a~~R~~~~~~~~lvv~N~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~l~p~~~~vl 470 (473)
+.+..|-+-.|.. +.+ ++|+|++++++++.+-. ++. ...+|.|.|.+.+|+
T Consensus 668 stp~gVEVtvR~~--dGk-lFVINnTdEpqtV~Ly~------------~~g-------------~~~~~~l~~~e~~w~ 718 (719)
T TIGR02336 668 SSNPECEVAHFPE--QGK-YCVINNTDEPQKTTVTL------------ADG-------------TTEDFTLPPSEIRWR 718 (719)
T ss_pred CCCCCeEEEEEeC--CCc-EEEEcCCCCcEEEEEEc------------CCC-------------ceeEEEEcccccEec
Confidence 3567788888844 333 99999999999887632 111 235789999998886
No 226
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=25.96 E-value=71 Score=32.69 Aligned_cols=24 Identities=29% Similarity=0.444 Sum_probs=22.4
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEe
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V 64 (473)
.+++++++.+-|+++||.||+|-.
T Consensus 171 s~~~l~~i~eia~~~gi~li~DaA 194 (431)
T cd00617 171 SMANLREVRELAHKYGIPVVLDAA 194 (431)
T ss_pred CHHHHHHHHHHHHHcCCEEEEEch
Confidence 378999999999999999999998
No 227
>PTZ00445 p36-lilke protein; Provisional
Probab=25.91 E-value=78 Score=28.85 Aligned_cols=19 Identities=26% Similarity=0.389 Sum_probs=17.9
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.+|++|++++.+.||+|++
T Consensus 78 pefk~~~~~l~~~~I~v~V 96 (219)
T PTZ00445 78 PDFKILGKRLKNSNIKISV 96 (219)
T ss_pred HHHHHHHHHHHHCCCeEEE
Confidence 8999999999999999974
No 228
>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]
Probab=25.86 E-value=1.1e+02 Score=31.48 Aligned_cols=49 Identities=18% Similarity=0.059 Sum_probs=39.5
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 78 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 78 (473)
-++|-.|. +..-.++.+=|++|.+-|+++||-+|.|=|=.-+++ ...||
T Consensus 227 I~EpIQge-gG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GR---TG~~f 275 (447)
T COG0160 227 IIEPIQGE-GGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGR---TGKMF 275 (447)
T ss_pred EEecccCC-CCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCc---cccch
Confidence 35666666 223337788899999999999999999999999999 77666
No 229
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=25.85 E-value=60 Score=32.73 Aligned_cols=33 Identities=15% Similarity=0.263 Sum_probs=26.2
Q ss_pred CCCCCchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 35 GGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 35 ~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
|..|.=.+.|++++++.||+.|..||+|=.+--
T Consensus 158 PsNP~l~v~DI~~i~~~A~~~g~~vvVDNTfat 190 (396)
T COG0626 158 PSNPLLEVPDIPAIARLAKAYGALVVVDNTFAT 190 (396)
T ss_pred CCCcccccccHHHHHHHHHhcCCEEEEECCccc
Confidence 444555579999999999999999999965543
No 230
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=25.36 E-value=93 Score=30.98 Aligned_cols=21 Identities=19% Similarity=0.268 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHCCCEEEEEE
Q 011993 43 WEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~ 63 (473)
+.++.|-+.|++.||.++-++
T Consensus 169 e~l~~L~~~~~~~Gl~~~t~v 189 (360)
T PRK12595 169 EGLKILKQVADEYGLAVISEI 189 (360)
T ss_pred HHHHHHHHHHHHcCCCEEEee
Confidence 999999999999999999986
No 231
>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes. PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis
Probab=25.32 E-value=59 Score=27.37 Aligned_cols=28 Identities=21% Similarity=0.232 Sum_probs=22.2
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.+++++++.||++|+.+|+|-...-...
T Consensus 109 ~~~~~l~~~~~~~~~~li~D~a~~~~~~ 136 (170)
T cd01494 109 VPLKEIRKIAKEYGILLLVDAASAGGAS 136 (170)
T ss_pred cCHHHHHHHHHHcCCEEEEecccccccc
Confidence 4568888999999999999976654443
No 232
>cd06232 Peptidase_M14-like_5 Peptidase M14-like domain of a functionally uncharacterized subgroup of the M14 family of metallocarboxypeptidases (MCPs). The M14 family are zinc-binding carboxypeptidases (CPs) which hydrolyze single, C-terminal amino acids from polypeptide chains, and have a recognition site for the free C-terminal carboxyl group, which is a key determinant of specificity. Two major subfamilies of the M14 family, defined based on sequence and structural homology, are the A/B and N/E subfamilies. Enzymes belonging to the A/B subfamily are normally synthesized as inactive precursors containing preceding signal peptide, followed by an N-terminal pro-region linked to the enzyme; these proenzymes are called procarboxypeptidases. The A/B enzymes can be further divided based on their substrate specificity; Carboxypeptidase A-like (CPA-like) enzymes favor hydrophobic residues while carboxypeptidase B-like (CPB-like) enzymes only cleave the basic residues lysine or arginine. The
Probab=25.27 E-value=2.7e+02 Score=25.85 Aligned_cols=51 Identities=18% Similarity=0.173 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceee-cCCCCc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMV-DGTGQL 98 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 98 (473)
.+|-..+.+...+.|..|.+|+ |--. +|.|...+.+.+...|-.| -|+|-+
T Consensus 119 ~~Es~~~~~~~~~~~~~~hiDl---Heyp---~~E~~~~la~~~~~~~~~~~iP~Gf~ 170 (240)
T cd06232 119 FGEREARHQALAKSGAQLHVNL---HGYP---AHEWTRPLSGYVPRGFESWTLPKGFF 170 (240)
T ss_pred chHHHHHHHHHHhhCCcEEEEC---CCCC---cccccccccccCCCCCcCCccCCceE
Confidence 3555555555556689999999 8777 7888877665555444333 344443
No 233
>PLN02460 indole-3-glycerol-phosphate synthase
Probab=24.94 E-value=80 Score=31.00 Aligned_cols=25 Identities=24% Similarity=0.514 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
++|++|++.||.+||.+++.+ |...
T Consensus 217 ~~L~~l~~~A~~LGme~LVEV---H~~~ 241 (338)
T PLN02460 217 LDIKYMLKICKSLGMAALIEV---HDER 241 (338)
T ss_pred HHHHHHHHHHHHcCCeEEEEe---CCHH
Confidence 689999999999999999998 7553
No 234
>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis. This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.
Probab=24.92 E-value=64 Score=32.13 Aligned_cols=24 Identities=13% Similarity=0.340 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.+++++++.||++|+.||+|-++
T Consensus 141 ~~dl~~i~~la~~~g~~livD~t~ 164 (369)
T cd00614 141 VVDIEAIAELAHEHGALLVVDNTF 164 (369)
T ss_pred ecCHHHHHHHHHHcCCEEEEECCC
Confidence 578999999999999999999864
No 235
>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []. One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.
Probab=24.66 E-value=44 Score=33.96 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 011993 42 SWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V 64 (473)
.-|++++++.||++|+.|++|=.
T Consensus 183 ~~di~~I~~~~h~~~~~llvDEA 205 (417)
T PF01276_consen 183 CYDIKEIAEICHKHGIPLLVDEA 205 (417)
T ss_dssp EE-HHHHHHHHCCTECEEEEE-T
T ss_pred EECHHHHHHHhcccCCEEEEEcc
Confidence 48999999999999999999953
No 236
>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional
Probab=24.65 E-value=74 Score=31.87 Aligned_cols=32 Identities=25% Similarity=0.357 Sum_probs=26.4
Q ss_pred CCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecc
Q 011993 27 PMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 66 (473)
Q Consensus 27 vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~N 66 (473)
++...|+ +.+++++++.||++|+.|++|-+.-
T Consensus 167 ~~~~tG~--------~~~l~~I~~la~~~g~~livD~a~~ 198 (387)
T PRK09331 167 VDGNYGN--------LADAKKVAKVAHEYGIPFLLNGAYT 198 (387)
T ss_pred CCCCCcc--------cccHHHHHHHHHHcCCEEEEECCcc
Confidence 4445777 5899999999999999999998643
No 237
>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated. Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.
Probab=24.31 E-value=77 Score=32.49 Aligned_cols=24 Identities=17% Similarity=0.188 Sum_probs=22.0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEE
Q 011993 40 KASWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~ 63 (473)
=+++.+++..+.||++||.|+||-
T Consensus 201 vslenlr~V~~la~~~GIplhLDg 224 (467)
T TIGR02617 201 VSLANLKAVYEIAKKYDIPVVMDS 224 (467)
T ss_pred eCHHHHHHHHHHHHHcCCcEEEEh
Confidence 448999999999999999999996
No 238
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=24.25 E-value=79 Score=29.59 Aligned_cols=25 Identities=28% Similarity=0.593 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 43 WEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
+++++|++.|+..||.+++.+ |...
T Consensus 138 ~~l~~l~~~a~~lGle~LVEV---h~~~ 162 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEV---HTED 162 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEE---CCHH
Confidence 689999999999999999999 7543
No 239
>PRK05968 hypothetical protein; Provisional
Probab=24.25 E-value=95 Score=31.21 Aligned_cols=24 Identities=8% Similarity=0.213 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.+++++.+.||++|+.||+|-..
T Consensus 163 ~~dl~~i~~la~~~gi~vivD~a~ 186 (389)
T PRK05968 163 LQDVAALAALAKRHGVVTMIDNSW 186 (389)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCC
Confidence 599999999999999999999854
No 240
>cd07945 DRE_TIM_CMS Leptospira interrogans citramalate synthase (CMS) and related proteins, N-terminal catalytic TIM barrel domain. Citramalate synthase (CMS) catalyzes the conversion of pyruvate and acetyl-CoA to (R)-citramalate in the first dedicated step of the citramalate pathway. Citramalate is only found in Leptospira interrogans and a few other microorganisms. This family belongs to the DRE-TIM metallolyase superfamily. DRE-TIM metallolyases include 2-isopropylmalate synthase (IPMS), alpha-isopropylmalate synthase (LeuA), 3-hydroxy-3-methylglutaryl-CoA lyase, homocitrate synthase, citramalate synthase, 4-hydroxy-2-oxovalerate aldolase, re-citrate synthase, transcarboxylase 5S, pyruvate carboxylase, AksA, and FrbC. These members all share a conserved triose-phosphate isomerase (TIM) barrel domain consisting of a core beta(8)-alpha(8) motif with the eight parallel beta strands forming an enclosed barrel surrounded by eight alpha helices. The domain has a catalytic center con
Probab=24.15 E-value=2.8e+02 Score=26.45 Aligned_cols=75 Identities=15% Similarity=0.239 Sum_probs=49.3
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
..+++++++|+.|+++|++|.+.+- +++. |+. . +| +++
T Consensus 112 e~l~~~~~~i~~a~~~G~~v~~~~~--d~~~-----~~r-----------------------------~---~~---~~~ 149 (280)
T cd07945 112 EHFADIREVIEYAIKNGIEVNIYLE--DWSN-----GMR-----------------------------D---SP---DYV 149 (280)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEEE--eCCC-----CCc-----------------------------C---CH---HHH
Confidence 5577889999999999999887763 2221 110 0 12 477
Q ss_pred HHHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 120 LDSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
.+.++... +.|+|.+++- ++..+ +|....+.++.+++
T Consensus 150 ~~~~~~~~-~~G~~~i~l~DT~G~~------~P~~v~~l~~~l~~ 187 (280)
T cd07945 150 FQLVDFLS-DLPIKRIMLPDTLGIL------SPFETYTYISDMVK 187 (280)
T ss_pred HHHHHHHH-HcCCCEEEecCCCCCC------CHHHHHHHHHHHHh
Confidence 88888888 7999999884 55543 23344555666554
No 241
>PRK11113 D-alanyl-D-alanine carboxypeptidase/endopeptidase; Provisional
Probab=23.96 E-value=78 Score=32.88 Aligned_cols=33 Identities=15% Similarity=0.315 Sum_probs=26.8
Q ss_pred CCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE-EEeccccc
Q 011993 28 MSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL-DVVYNHTN 69 (473)
Q Consensus 28 dp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~Vil-D~V~NH~~ 69 (473)
||.|++ ++|.+|+++++++||+-|- |+|+.-..
T Consensus 108 DPtL~~---------~~L~~la~~l~~~GI~~I~G~lv~D~s~ 141 (477)
T PRK11113 108 DPTLTR---------QDLRNMVATLKKSGVKQIDGNLLIDTSV 141 (477)
T ss_pred CCCCCH---------HHHHHHHHHHHHcCCcEEeeeEEEECcc
Confidence 788887 8999999999999999775 66665433
No 242
>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase. This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)
Probab=23.95 E-value=83 Score=32.29 Aligned_cols=23 Identities=22% Similarity=0.335 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEe
Q 011993 42 SWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V 64 (473)
+++++++.+-|+++||.|++|-.
T Consensus 190 ~~~l~~I~elA~~~Gl~vi~DaA 212 (450)
T TIGR02618 190 MANMREVRELCEAHGIKVFYDAT 212 (450)
T ss_pred HHHHHHHHHHHHHcCCEEEEEcc
Confidence 58999999999999999999973
No 243
>PRK07998 gatY putative fructose-1,6-bisphosphate aldolase; Reviewed
Probab=23.93 E-value=6.5e+02 Score=24.12 Aligned_cols=82 Identities=17% Similarity=0.107 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHHHH
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELILD 121 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i~~ 121 (473)
++.-+++|+.||.+|+. +..-+.|++...+ . -. . . ...+.+|+-.
T Consensus 114 i~~T~~vve~Ah~~gv~--VEaElG~vgg~ed-~-~~-----------------------~--~-~~~~T~pe~a----- 158 (283)
T PRK07998 114 IAFTKEAVDFAKSYGVP--VEAELGAILGKED-D-HV-----------------------S--E-ADCKTEPEKV----- 158 (283)
T ss_pred HHHHHHHHHHHHHcCCE--EEEEeccCCCccc-c-cc-----------------------c--c-ccccCCHHHH-----
Confidence 67789999999999997 5667788864111 0 00 0 0 1235556432
Q ss_pred HHHHHHHhcCccEEEEe--cccccccCCCCCCCCCHHHHHHHHhc
Q 011993 122 SLRHWVVEYHVDGFRFD--LASVLCRGTDGSPLNAPPLIRAIAKD 164 (473)
Q Consensus 122 ~~~~w~~~~giDGfR~D--aa~~l~~~~~~~~~~~~~~~~~~~~~ 164 (473)
..++++.|||-+=+. .++.+++. +....+++++|.+.
T Consensus 159 --~~Fv~~TgvD~LAvaiGt~HG~Y~~----p~l~~~~l~~I~~~ 197 (283)
T PRK07998 159 --KDFVERTGCDMLAVSIGNVHGLEDI----PRIDIPLLKRIAEV 197 (283)
T ss_pred --HHHHHHhCcCeeehhccccccCCCC----CCcCHHHHHHHHhh
Confidence 556668999977666 45666543 44567899999874
No 244
>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal). Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....
Probab=23.88 E-value=81 Score=31.77 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=18.8
Q ss_pred hHHHHHHHHHHHHHCC-CEEEEEEec
Q 011993 41 ASWEFKEMVKALHGAG-IEVILDVVY 65 (473)
Q Consensus 41 ~~edl~~lv~~aH~~G-i~VilD~V~ 65 (473)
.+.|+.++++.||++| +.||+|=.+
T Consensus 155 ~v~Dl~~i~~~a~~~g~~~~vVDnT~ 180 (386)
T PF01053_consen 155 EVPDLEAIAKLAKEHGDILVVVDNTF 180 (386)
T ss_dssp B---HHHHHHHHHHTTT-EEEEECTT
T ss_pred ccccHHHHHHHHHHhCCceEEeeccc
Confidence 3599999999999999 999999654
No 245
>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....
Probab=23.84 E-value=50 Score=32.75 Aligned_cols=37 Identities=14% Similarity=0.162 Sum_probs=29.9
Q ss_pred CCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEe
Q 011993 20 STINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVV 64 (473)
Q Consensus 20 ~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V 64 (473)
...-+..++..-|.. .+++++.+.||++|..+++|.+
T Consensus 141 ~lv~~~~~~~~tG~~--------~pi~~I~~~~~~~~~~~~vD~~ 177 (371)
T PF00266_consen 141 RLVSISHVENSTGVR--------NPIEEIAKLAHEYGALLVVDAA 177 (371)
T ss_dssp SEEEEESBETTTTBB--------SSHHHHHHHHHHTTSEEEEE-T
T ss_pred ceEEeecccccccEE--------eeeceehhhhhccCCceeEech
Confidence 344466778888884 8899999999999999999985
No 246
>PLN02651 cysteine desulfurase
Probab=23.84 E-value=71 Score=31.60 Aligned_cols=32 Identities=6% Similarity=-0.057 Sum_probs=25.6
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEec
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
.++..-|. +.+++++.+.||++|+.+++|.+-
T Consensus 146 ~~~n~tG~--------~~~l~~I~~~~~~~g~~~~vD~a~ 177 (364)
T PLN02651 146 AVNNEIGV--------IQPVEEIGELCREKKVLFHTDAAQ 177 (364)
T ss_pred CCCCCcee--------cccHHHHHHHHHHcCCEEEEEcch
Confidence 44445566 588999999999999999999763
No 247
>cd07937 DRE_TIM_PC_TC_5S Pyruvate carboxylase and Transcarboxylase 5S, carboxyltransferase domain. This family includes the carboxyltransferase domains of pyruvate carboxylase (PC) and the transcarboxylase (TC) 5S subunit. Transcarboxylase 5S is a cobalt-dependent metalloenzyme subunit of the biotin-dependent transcarboxylase multienzyme complex. Transcarboxylase 5S transfers carbon dioxide from the 1.3S biotin to pyruvate in the second of two carboxylation reactions catalyzed by TC. The first reaction involves the transfer of carbon dioxide from methylmalonyl-CoA to the 1.3S biotin, and is catalyzed by the 12S subunit. These two steps allow a carboxylate group to be transferred from oxaloacetate to propionyl-CoA to yield pyruvate and methylmalonyl-CoA. The catalytic domain of transcarboxylase 5S has a canonical TIM-barrel fold with a large C-terminal extension that forms a funnel leading to the active site. Transcarboxylase 5S forms a homodimer and there are six dimers per complex
Probab=23.76 E-value=3.2e+02 Score=25.90 Aligned_cols=40 Identities=23% Similarity=0.366 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 117 ELILDSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+++.+.++... +.|+|.+++- ++..+. +....+.++.+++
T Consensus 149 ~~~~~~~~~~~-~~Ga~~i~l~DT~G~~~------P~~v~~lv~~l~~ 189 (275)
T cd07937 149 EYYVKLAKELE-DMGADSICIKDMAGLLT------PYAAYELVKALKK 189 (275)
T ss_pred HHHHHHHHHHH-HcCCCEEEEcCCCCCCC------HHHHHHHHHHHHH
Confidence 44566666666 7899999985 555442 2334555555554
No 248
>PLN02509 cystathionine beta-lyase
Probab=23.67 E-value=1.1e+02 Score=31.78 Aligned_cols=24 Identities=17% Similarity=0.314 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.|++++++.||++|+.||+|-.+
T Consensus 233 i~Dl~~I~~lAk~~g~~lIVD~A~ 256 (464)
T PLN02509 233 ISDIRKIAEMAHAQGALVLVDNSI 256 (464)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCc
Confidence 699999999999999999999873
No 249
>COG1441 MenC O-succinylbenzoate synthase [Coenzyme metabolism]
Probab=23.66 E-value=81 Score=28.91 Aligned_cols=22 Identities=18% Similarity=0.431 Sum_probs=19.6
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~ 63 (473)
++-.++||++||..|+.-++--
T Consensus 243 l~r~~eli~qAh~lGl~AVISS 264 (321)
T COG1441 243 LQRVRELVQQAHALGLTAVISS 264 (321)
T ss_pred HHHHHHHHHHHHhcCceeEeec
Confidence 7899999999999999987753
No 250
>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.
Probab=23.54 E-value=75 Score=31.60 Aligned_cols=33 Identities=15% Similarity=0.289 Sum_probs=27.3
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYN 66 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~N 66 (473)
.++..+|+ +.+++++++.||+.|..||+|-+.-
T Consensus 154 ~p~~~~G~--------~~~l~~i~~la~~~~~~livDea~~ 186 (370)
T TIGR02539 154 HVDGEYGN--------LPDAGKVAKVCREKGVPLLLNCAYT 186 (370)
T ss_pred CCCCCCcc--------ccCHHHHHHHHHHcCCeEEEECccc
Confidence 35666788 5899999999999999999998644
No 251
>PRK08960 hypothetical protein; Provisional
Probab=23.42 E-value=1e+02 Score=30.69 Aligned_cols=35 Identities=23% Similarity=0.361 Sum_probs=28.5
Q ss_pred CCCCchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 36 GGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 36 ~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-+..-..+++++|++.||++|+.||+|=++.+...
T Consensus 178 tG~~~~~~~~~~l~~~~~~~~~~li~De~Y~~~~~ 212 (387)
T PRK08960 178 TGTLLSRDELAALSQALRARGGHLVVDEIYHGLTY 212 (387)
T ss_pred CCcCcCHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence 33345579999999999999999999998877553
No 252
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=23.22 E-value=1.1e+02 Score=24.74 Aligned_cols=19 Identities=16% Similarity=0.158 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.+..+.++.|+++|++||.
T Consensus 57 ~e~i~~~~~a~~~g~~iI~ 75 (119)
T cd05017 57 EETLSAVEQAKERGAKIVA 75 (119)
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 8999999999999999873
No 253
>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional
Probab=23.19 E-value=1e+02 Score=31.47 Aligned_cols=32 Identities=25% Similarity=0.322 Sum_probs=28.0
Q ss_pred CchHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 39 LKASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 39 ~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.-..++++++++.|+++|+.||.|-++.|...
T Consensus 206 v~~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~ 237 (430)
T PLN00145 206 VYSYEHLAKIAETARKLGILVIADEVYDHLTF 237 (430)
T ss_pred CCCHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence 35568999999999999999999999988764
No 254
>smart00518 AP2Ec AP endonuclease family 2. These endonucleases play a role in DNA repair. Cleave phosphodiester bonds at apurinic or apyrimidinic sites
Probab=23.10 E-value=3.3e+02 Score=25.51 Aligned_cols=41 Identities=20% Similarity=0.191 Sum_probs=27.8
Q ss_pred CCCCCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 011993 18 GYSTINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 18 GY~~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~Vil 61 (473)
||....++.-.|++-..+ .-..+++++|.+.+.+.||+|.+
T Consensus 23 G~~~vel~~~~~~~~~~~---~~~~~~~~~l~~~~~~~gl~ls~ 63 (273)
T smart00518 23 GARSFQLFLGNPRSWKGV---RLSEETAEKFKEALKENNIDVSV 63 (273)
T ss_pred CCCEEEEECCCCCCCCCC---CCCHHHHHHHHHHHHHcCCCEEE
Confidence 777777777777664210 11137788888889999999654
No 255
>PF13580 SIS_2: SIS domain; PDB: 1TK9_C 2I22_B 2I2W_A 1X92_A 3BJZ_D 2XBL_B 2X3Y_F 2YVA_B 3CVJ_D 3TRJ_D ....
Probab=22.99 E-value=93 Score=26.00 Aligned_cols=19 Identities=21% Similarity=0.223 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.-.-+.++.|+++||+||.
T Consensus 117 ~~vi~a~~~Ak~~G~~vIa 135 (138)
T PF13580_consen 117 PNVIEAAEEAKERGMKVIA 135 (138)
T ss_dssp HHHHHHHHHHHHTT-EEEE
T ss_pred HHHHHHHHHHHHCCCEEEE
Confidence 6788899999999999984
No 256
>PF12905 Glyco_hydro_101: Endo-alpha-N-acetylgalactosaminidase; PDB: 3ECQ_B 2ZXQ_A.
Probab=22.82 E-value=1e+02 Score=31.04 Aligned_cols=47 Identities=6% Similarity=-0.015 Sum_probs=33.9
Q ss_pred CcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccc
Q 011993 22 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTT 79 (473)
Q Consensus 22 ~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~ 79 (473)
.||-.|.+|.|. .+||+.|+++.|+.|-++=+=+-..-+-+ +.+.|.
T Consensus 82 pdy~~~~~R~GG--------~~D~~~L~~~g~~yna~~GvHVNatE~Yp---ea~~f~ 128 (425)
T PF12905_consen 82 PDYGNINKRAGG--------AEDFNTLLEEGRKYNAKFGVHVNATEAYP---EAKAFN 128 (425)
T ss_dssp T-TT-B-GGGTH--------HHHHHHHHHHHHTTTEEEEEEEESSEE-T---TSTT--
T ss_pred cchhhhcccccc--------HHHHHHHHHHHHhhCCeEEEEEcceecCc---cccccc
Confidence 577788888888 69999999999999999888776666666 666553
No 257
>PF00215 OMPdecase: Orotidine 5'-phosphate decarboxylase / HUMPS family; InterPro: IPR001754 Orotidine 5'-phosphate decarboxylase (OMPdecase) [, ] catalyses the last step in the de novo biosynthesis of pyrimidines, the decarboxylation of OMP into UMP. In higher eukaryotes OMPdecase is part, with orotate phosphoribosyltransferase, of a bifunctional enzyme, while the prokaryotic and fungal OMPdecases are monofunctional protein. Some parts of the sequence of OMPdecase are well conserved across species. The best conserved region is located in the N-terminal half of OMPdecases and is centred around a lysine residue which is essential for the catalytic function of the enzyme. This entry also includes enzymes such as 3-hexulose-6-phosphate synthase 4.1.2.43 from EC and 3-keto-L-gulonate-6-phosphate decarboxylase 4.1.1.85 from EC.; GO: 0004590 orotidine-5'-phosphate decarboxylase activity, 0006207 'de novo' pyrimidine base biosynthetic process; PDB: 2YYT_D 2YYU_B 3RU6_D 2CZE_B 2CZ5_B 2CZF_A 2CZD_A 3R89_A 2ZCG_A 2ZA1_A ....
Probab=22.66 E-value=2.2e+02 Score=25.97 Aligned_cols=40 Identities=13% Similarity=0.050 Sum_probs=30.9
Q ss_pred CCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCC-CEEEEEEeccccc
Q 011993 21 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAG-IEVILDVVYNHTN 69 (473)
Q Consensus 21 ~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~G-i~VilD~V~NH~~ 69 (473)
.-|+..|++.-|. +-++.+++.+++.| .++++=..++|.+
T Consensus 85 gaD~vTv~~~~G~---------~tl~~~~~~a~~~~~~~~~~v~~~s~~~ 125 (226)
T PF00215_consen 85 GADAVTVHPFAGD---------DTLEAAVKAAKKHGRKGVFVVDLLSNPD 125 (226)
T ss_dssp TESEEEEEGTTHH---------HHHHHHHHHHHHTTESEEEEEESTTSTT
T ss_pred CCcEEEEeccCCH---------HHHHHHHHHHhccCCcceEEEEecCCCC
Confidence 3577788888887 99999999999999 6665555555544
No 258
>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]
Probab=22.60 E-value=1.2e+02 Score=30.59 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCC
Q 011993 38 PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEAD 72 (473)
Q Consensus 38 ~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~ 72 (473)
-....++|+++++-|.++|+.||.|-++.+...++
T Consensus 178 av~~~~~l~~i~~~a~~~~i~ii~DEiY~~l~yd~ 212 (393)
T COG0436 178 AVYSKEELKAIVELAREHDIIIISDEIYEELVYDG 212 (393)
T ss_pred cCCCHHHHHHHHHHHHHcCeEEEEehhhhhcccCC
Confidence 33557999999999999999999999999999843
No 259
>PRK07269 cystathionine gamma-synthase; Reviewed
Probab=22.49 E-value=73 Score=31.72 Aligned_cols=24 Identities=25% Similarity=0.588 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.|++++++.||++|+.||+|-.+
T Consensus 152 ~~di~~I~~la~~~gi~vvvD~t~ 175 (364)
T PRK07269 152 EFDIEKVAKLAHAKGAKVIVDNTF 175 (364)
T ss_pred eeCHHHHHHHHHHcCCEEEEECCC
Confidence 479999999999999999999985
No 260
>TIGR01212 radical SAM protein, TIGR01212 family. This uncharacterized protein family shows significant similarity to TIGR01211, a longer protein that is a histone acetyltransferase at its C-terminus and is a subunit of RNA polymerase II (in yeast). This family lacks the GNAT acetyltransferase domain.
Probab=22.34 E-value=2.8e+02 Score=26.73 Aligned_cols=26 Identities=23% Similarity=0.221 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+++.+.++.+++.||+|..|+.++-
T Consensus 162 ~~~~~~ai~~l~~~gi~v~~~lI~Gl 187 (302)
T TIGR01212 162 FACYVDAVKRARKRGIKVCSHVILGL 187 (302)
T ss_pred HHHHHHHHHHHHHcCCEEEEeEEECC
Confidence 46777777777777777777776654
No 261
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=22.33 E-value=86 Score=25.00 Aligned_cols=21 Identities=29% Similarity=0.420 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHCCCEEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVILD 62 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD 62 (473)
.+++++|++.|+++|..|++.
T Consensus 99 ~~~~~~l~~~a~~~~~~~~Vg 119 (120)
T PF01408_consen 99 LEEAEELVEAAKEKGVKVMVG 119 (120)
T ss_dssp HHHHHHHHHHHHHHTSCEEEE
T ss_pred HHHHHHHHHHHHHhCCEEEEe
Confidence 799999999999999998764
No 262
>PRK07777 aminotransferase; Validated
Probab=22.11 E-value=1.8e+02 Score=28.94 Aligned_cols=30 Identities=23% Similarity=0.233 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
..+++++|++.|+++|+.||.|-+..+...
T Consensus 177 ~~~~~~~l~~~~~~~~~~li~De~y~~~~~ 206 (387)
T PRK07777 177 TAAELAAIAELAVEHDLLVITDEVYEHLVF 206 (387)
T ss_pred CHHHHHHHHHHHHhcCcEEEEeccchhccc
Confidence 358999999999999999999998877664
No 263
>PRK09589 celA 6-phospho-beta-glucosidase; Reviewed
Probab=21.90 E-value=2.8e+02 Score=28.88 Aligned_cols=41 Identities=10% Similarity=0.118 Sum_probs=30.1
Q ss_pred CCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 26 SPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 26 ~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
.|-|. |+++..-+++++=.++||++|.++||..|+-+ .|..
T Consensus 92 RI~P~-G~~~~~N~~gl~~Y~~lid~L~~~GI~P~VTL--~H~d 132 (476)
T PRK09589 92 RIFPQ-GDELEPNEEGLQFYDDLFDECLKQGIEPVVTL--SHFE 132 (476)
T ss_pred hcCcC-CCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEe--cCCC
Confidence 66665 44222234788999999999999999999876 4643
No 264
>COG0826 Collagenase and related proteases [Posttranslational modification, protein turnover, chaperones]
Probab=21.86 E-value=91 Score=30.87 Aligned_cols=22 Identities=32% Similarity=0.398 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~ 63 (473)
.++|++.|+.||++|.++++=+
T Consensus 48 ~~~l~e~i~~ah~~gkk~~V~~ 69 (347)
T COG0826 48 VEDLAEAVELAHSAGKKVYVAV 69 (347)
T ss_pred HHHHHHHHHHHHHcCCeEEEEe
Confidence 5899999999999999998643
No 265
>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.
Probab=21.81 E-value=78 Score=30.80 Aligned_cols=24 Identities=17% Similarity=0.128 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.+++++++.||++|+.||+|-+.
T Consensus 148 ~~~~~~i~~~~~~~~~~livD~a~ 171 (349)
T cd06454 148 IAPLPELVDLAKKYGAILFVDEAH 171 (349)
T ss_pred ccCHHHHHHHHHHcCCEEEEEccc
Confidence 478899999999999999999984
No 266
>PRK08247 cystathionine gamma-synthase; Reviewed
Probab=21.69 E-value=1.1e+02 Score=30.29 Aligned_cols=24 Identities=17% Similarity=0.339 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
..+++++++.||++|+.||.|-++
T Consensus 152 ~~dl~~I~~la~~~g~~lIvD~t~ 175 (366)
T PRK08247 152 ETDIAAIAKIAKKHGLLLIVDNTF 175 (366)
T ss_pred HHHHHHHHHHHHHcCCEEEEECCC
Confidence 599999999999999999999876
No 267
>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases. This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.
Probab=21.66 E-value=1.2e+02 Score=30.48 Aligned_cols=31 Identities=19% Similarity=0.302 Sum_probs=26.7
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-..++++++++.|+++|+.||.|-++.+...
T Consensus 186 ~~~~~~~~i~~~a~~~~~~ii~De~y~~~~~ 216 (403)
T TIGR01265 186 FSRDHLQKIAEVARKLGIPIIADEIYGHMVF 216 (403)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 3458899999999999999999999887654
No 268
>PRK07568 aspartate aminotransferase; Provisional
Probab=21.62 E-value=1.1e+02 Score=30.61 Aligned_cols=31 Identities=16% Similarity=0.112 Sum_probs=26.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-..++++++++.||++|+.||.|-++.....
T Consensus 179 ~~~~~~~~i~~~~~~~~~~ii~De~y~~~~~ 209 (397)
T PRK07568 179 YTKEELEMLAEIAKKHDLFLISDEVYREFVY 209 (397)
T ss_pred CCHHHHHHHHHHHHHCCcEEEEeccchhccc
Confidence 4468999999999999999999999877654
No 269
>PLN02746 hydroxymethylglutaryl-CoA lyase
Probab=21.59 E-value=3.3e+02 Score=26.95 Aligned_cols=78 Identities=17% Similarity=0.162 Sum_probs=47.0
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcccccCCcCCCCCCCHHHHHHH
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLLNYAGCGNTLNCNHPVVMELI 119 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dln~~np~V~~~i 119 (473)
..++.++++|+.|++.|++|..-+-.-- +. |. . . +.-.+++
T Consensus 159 e~l~~~~~~v~~Ak~~Gl~v~~~is~~f-g~-----p~------------------------~--~-------r~~~~~l 199 (347)
T PLN02746 159 ESLVRYREVALAAKKHSIPVRGYVSCVV-GC-----PI------------------------E--G-------PVPPSKV 199 (347)
T ss_pred HHHHHHHHHHHHHHHcCCeEEEEEEeee-cC-----Cc------------------------c--C-------CCCHHHH
Confidence 4567778999999999998854331110 11 10 0 0 0114567
Q ss_pred HHHHHHHHHhcCccEEEEe-cccccccCCCCCCCCCHHHHHHHHh
Q 011993 120 LDSLRHWVVEYHVDGFRFD-LASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 120 ~~~~~~w~~~~giDGfR~D-aa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
++.++..+ +.|+|-+++- .+... +|....+.++.+++
T Consensus 200 ~~~~~~~~-~~Gad~I~l~DT~G~a------~P~~v~~lv~~l~~ 237 (347)
T PLN02746 200 AYVAKELY-DMGCYEISLGDTIGVG------TPGTVVPMLEAVMA 237 (347)
T ss_pred HHHHHHHH-HcCCCEEEecCCcCCc------CHHHHHHHHHHHHH
Confidence 77888888 7999999884 55543 23345556666554
No 270
>PF07071 DUF1341: Protein of unknown function (DUF1341); InterPro: IPR010763 Members of this family of relatively uncommon proteins are found in both Gram-positive (e.g. Enterococcus faecalis) and Gram-negative (e.g. Aeromonas hydrophila) bacteria, as part of a cluster of conserved proteins. The function is unknown.; PDB: 3NZR_D 3LM7_A 3M0Z_B 3M6Y_A 3N73_A 3MUX_A.
Probab=21.48 E-value=1.1e+02 Score=27.49 Aligned_cols=22 Identities=32% Similarity=0.308 Sum_probs=18.7
Q ss_pred CCchHHHHHHHHHHHHHCCCEE
Q 011993 38 PLKASWEFKEMVKALHGAGIEV 59 (473)
Q Consensus 38 ~~~~~edl~~lv~~aH~~Gi~V 59 (473)
+++.++||+.+.++|-++||.+
T Consensus 159 Gl~~leE~~avAkA~a~~g~~l 180 (218)
T PF07071_consen 159 GLKHLEELKAVAKACARNGFTL 180 (218)
T ss_dssp TTTTHHHHHHHHHHHHHCT-EE
T ss_pred CcccHHHHHHHHHHHHHcCcee
Confidence 4467899999999999999987
No 271
>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]
Probab=21.41 E-value=92 Score=31.29 Aligned_cols=41 Identities=17% Similarity=0.157 Sum_probs=34.6
Q ss_pred CCchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcc
Q 011993 38 PLKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 78 (473)
Q Consensus 38 ~~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 78 (473)
.....++|.++++-|.++|+-||.|=|+.|...++.+|+-+
T Consensus 187 kvfsReeLe~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~ 227 (420)
T KOG0257|consen 187 KVFSREELERIAELCKKHGLLVISDEVYEWLVYDGNKHIRI 227 (420)
T ss_pred cccCHHHHHHHHHHHHHCCEEEEEhhHhHHHhhCCCcceee
Confidence 34667999999999999999999999999988866556544
No 272
>COG4874 Uncharacterized protein conserved in bacteria containing a pentein-type domain [Function unknown]
Probab=21.35 E-value=4.2e+02 Score=24.64 Aligned_cols=68 Identities=19% Similarity=0.398 Sum_probs=41.2
Q ss_pred cCCCCCCCCCCCCC-----CchHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCccccccCCCCccceeecCCCCcc
Q 011993 25 FSPMSRYAAGGGGP-----LKASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYTTSFRGIDNKVYYMVDGTGQLL 99 (473)
Q Consensus 25 ~~vdp~~Gt~~~~~-----~~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 99 (473)
.+.|..|-.+.... ..++.+|..+|+.+.+-|++|.+ +..++.+ +.| ++.=+..||-..+.|...
T Consensus 34 TA~dNafQ~~~~~~a~~i~q~A~~Ef~amve~L~~~GvdV~i---fddtg~~--~TP-----DsvFPNNWFSTh~~g~v~ 103 (318)
T COG4874 34 TAQDNAFQNPLALSAETILQRAMSEFNAMVEGLRQAGVDVVI---FDDTGQG--ETP-----DSVFPNNWFSTHEAGEVF 103 (318)
T ss_pred hhhhhhhhCcchhhHHHHHHHHHHHHHHHHHHHHhcCceEEE---eecCCCC--CCC-----cccCCCcccccCcCCeEE
Confidence 46666676642221 16789999999999999999853 4445541 111 111125677666666555
Q ss_pred ccc
Q 011993 100 NYA 102 (473)
Q Consensus 100 ~~~ 102 (473)
.|-
T Consensus 104 LyP 106 (318)
T COG4874 104 LYP 106 (318)
T ss_pred Eee
Confidence 443
No 273
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=21.32 E-value=1.2e+02 Score=24.70 Aligned_cols=19 Identities=26% Similarity=0.192 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.+..++++.|+++|+++++
T Consensus 74 ~~~~~~~~~a~~~g~~iv~ 92 (139)
T cd05013 74 KETVEAAEIAKERGAKVIA 92 (139)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 8899999999999999864
No 274
>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.
Probab=21.26 E-value=86 Score=30.94 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYN 66 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~N 66 (473)
+.+++++++.||++|+.|++|-+..
T Consensus 155 ~~~~~~i~~~~~~~~~~vivD~a~~ 179 (361)
T cd06452 155 LHDAKKIAKVCHEYGVPLLLNGAYT 179 (361)
T ss_pred eccHHHHHHHHHHcCCeEEEECCcc
Confidence 4889999999999999999999754
No 275
>PRK09082 methionine aminotransferase; Validated
Probab=21.22 E-value=1.7e+02 Score=29.14 Aligned_cols=29 Identities=24% Similarity=0.391 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
.++++++++.|+++|+.||.|-++.+...
T Consensus 182 ~~~~~~i~~~a~~~~i~li~De~y~~~~~ 210 (386)
T PRK09082 182 AADMRALWQLIAGTDIYVLSDEVYEHIVF 210 (386)
T ss_pred HHHHHHHHHHHHHCCEEEEEehhhhhhcc
Confidence 59999999999999999999999877654
No 276
>PRK08195 4-hyroxy-2-oxovalerate/4-hydroxy-2-oxopentanoic acid aldolase,; Validated
Probab=21.21 E-value=4.3e+02 Score=26.04 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=26.3
Q ss_pred HHHHHHHHHHHHhcCccEEEE-ecccccccCCCCCCCCCHHHHHHHHh
Q 011993 117 ELILDSLRHWVVEYHVDGFRF-DLASVLCRGTDGSPLNAPPLIRAIAK 163 (473)
Q Consensus 117 ~~i~~~~~~w~~~~giDGfR~-Daa~~l~~~~~~~~~~~~~~~~~~~~ 163 (473)
+++.+.++... ++|+|.|++ |++..+.. ....++++.+++
T Consensus 144 e~l~~~a~~~~-~~Ga~~i~i~DT~G~~~P------~~v~~~v~~l~~ 184 (337)
T PRK08195 144 EKLAEQAKLME-SYGAQCVYVVDSAGALLP------EDVRDRVRALRA 184 (337)
T ss_pred HHHHHHHHHHH-hCCCCEEEeCCCCCCCCH------HHHHHHHHHHHH
Confidence 56677777766 899999996 56665532 234556666654
No 277
>PLN02721 threonine aldolase
Probab=21.17 E-value=1.2e+02 Score=29.61 Aligned_cols=25 Identities=8% Similarity=0.019 Sum_probs=21.8
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEec
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
..+++++|++.||++|+.|++|-+.
T Consensus 156 ~~~~l~~l~~l~~~~g~~livD~a~ 180 (353)
T PLN02721 156 SVEYTDKVGELAKRHGLKLHIDGAR 180 (353)
T ss_pred cHHHHHHHHHHHHHcCCEEEEEchh
Confidence 3578999999999999999999753
No 278
>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]
Probab=21.07 E-value=88 Score=31.07 Aligned_cols=25 Identities=20% Similarity=0.300 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEec
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
.-|+|.++.+-|.++|++||.|=+-
T Consensus 176 t~eeL~~i~elc~kh~v~VISDEIH 200 (388)
T COG1168 176 TKEELRKIAELCLRHGVRVISDEIH 200 (388)
T ss_pred cHHHHHHHHHHHHHcCCEEEeeccc
Confidence 3599999999999999999999543
No 279
>TIGR00288 conserved hypothetical protein TIGR00288. This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.
Probab=20.99 E-value=1.1e+02 Score=26.52 Aligned_cols=22 Identities=18% Similarity=0.317 Sum_probs=19.8
Q ss_pred chHHHHHHHHHHHHHCCCEEEE
Q 011993 40 KASWEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~Vil 61 (473)
++-.||..||.+++++|.+|+.
T Consensus 113 SgD~DF~~Lv~~lre~G~~V~v 134 (160)
T TIGR00288 113 TRDADFLPVINKAKENGKETIV 134 (160)
T ss_pred eccHhHHHHHHHHHHCCCEEEE
Confidence 4458999999999999999987
No 280
>PF03644 Glyco_hydro_85: Glycosyl hydrolase family 85 ; InterPro: IPR005201 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This group of endo-beta-N-acetylglucosaminidases belong to the glycoside hydrolase family 85 (GH85 from CAZY). These enzymes work on a broad spectrum of substrates.; GO: 0033925 mannosyl-glycoprotein endo-beta-N-acetylglucosaminidase activity, 0005737 cytoplasm; PDB: 2W92_A 2W91_A 2VTF_B 3FHQ_B 3FHA_D 3GDB_A.
Probab=20.87 E-value=63 Score=31.43 Aligned_cols=21 Identities=19% Similarity=0.506 Sum_probs=15.2
Q ss_pred HHHHHHHHCCCEEEEEEeccc
Q 011993 47 EMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 47 ~lv~~aH~~Gi~VilD~V~NH 67 (473)
..|++||+.|.+|+==+.+.+
T Consensus 46 ~widaAHrnGV~vLGTiife~ 66 (311)
T PF03644_consen 46 GWIDAAHRNGVKVLGTIIFEW 66 (311)
T ss_dssp HHHHHHHHTT--EEEEEEEEE
T ss_pred hhHHHHHhcCceEEEEEEecC
Confidence 468999999999988777733
No 281
>PRK05764 aspartate aminotransferase; Provisional
Probab=20.59 E-value=1.2e+02 Score=30.34 Aligned_cols=30 Identities=17% Similarity=0.179 Sum_probs=25.1
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEeccccc
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTN 69 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~ 69 (473)
-..++++++++.|+++|+.||.|-++....
T Consensus 181 ~~~~~~~~l~~~a~~~~~~ii~De~y~~~~ 210 (393)
T PRK05764 181 YSPEELEAIADVAVEHDIWVLSDEIYEKLV 210 (393)
T ss_pred cCHHHHHHHHHHHHHCCcEEEEecccccee
Confidence 346899999999999999999998765543
No 282
>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional
Probab=20.56 E-value=1e+02 Score=31.80 Aligned_cols=22 Identities=18% Similarity=0.332 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHCCCEEEEEE
Q 011993 42 SWEFKEMVKALHGAGIEVILDV 63 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~ 63 (473)
+++++++.+-|+++|+.||+|-
T Consensus 197 ~~~l~~I~~ia~~~gi~li~Da 218 (460)
T PRK13238 197 MANLRAVYEIAKKYGIPVVIDA 218 (460)
T ss_pred HHHHHHHHHHHHHcCCEEEEEC
Confidence 7999999999999999999997
No 283
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=20.55 E-value=86 Score=29.45 Aligned_cols=46 Identities=11% Similarity=0.109 Sum_probs=30.8
Q ss_pred CcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 22 INFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 22 ~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.|+-.||..|-..-........-++.+|+.||+.|++||...|=+-
T Consensus 172 ~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~vvaEGVEt~ 217 (256)
T COG2200 172 PDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTVVAEGVETE 217 (256)
T ss_pred CCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEEEEeecCCH
Confidence 4555667666553111112224599999999999999999987543
No 284
>PRK07324 transaminase; Validated
Probab=20.50 E-value=1.4e+02 Score=29.72 Aligned_cols=31 Identities=23% Similarity=0.251 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-..++++++++.|+++|+.||.|-++.+...
T Consensus 170 ~~~~~l~~i~~~a~~~~~~ii~De~y~~l~~ 200 (373)
T PRK07324 170 MDRAYLEEIVEIARSVDAYVLSDEVYRPLDE 200 (373)
T ss_pred CCHHHHHHHHHHHHHCCCEEEEEcccccccc
Confidence 3468899999999999999999998766543
No 285
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=20.46 E-value=1.2e+02 Score=24.43 Aligned_cols=26 Identities=15% Similarity=0.276 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEeccc
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVYNH 67 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~NH 67 (473)
.+.|++++++|.+.|+.|+|=-+++-
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g 35 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDG 35 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCC
Confidence 49999999999999999988665544
No 286
>PLN00175 aminotransferase family protein; Provisional
Probab=20.23 E-value=1.3e+02 Score=30.38 Aligned_cols=31 Identities=13% Similarity=0.086 Sum_probs=27.4
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-..++++++++.|+++|+.||.|-++.+...
T Consensus 204 ~s~~~l~~l~~~a~~~~~~ii~De~Y~~l~~ 234 (413)
T PLN00175 204 FTREELELIASLCKENDVLAFTDEVYDKLAF 234 (413)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEecccCcccc
Confidence 4468999999999999999999999888764
No 287
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=20.22 E-value=1.3e+02 Score=24.33 Aligned_cols=19 Identities=5% Similarity=0.081 Sum_probs=17.5
Q ss_pred HHHHHHHHHHHHCCCEEEE
Q 011993 43 WEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 43 edl~~lv~~aH~~Gi~Vil 61 (473)
.+..+.++.|+++|.+||.
T Consensus 60 ~e~~~~~~~a~~~g~~vi~ 78 (126)
T cd05008 60 ADTLAALRLAKEKGAKTVA 78 (126)
T ss_pred HHHHHHHHHHHHcCCeEEE
Confidence 7899999999999999875
No 288
>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue. On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....
Probab=20.16 E-value=1.3e+02 Score=29.47 Aligned_cols=35 Identities=17% Similarity=0.175 Sum_probs=28.9
Q ss_pred hHHHHHHHHHHHHHCCCEEEEEEecccccCCCCCCCcc
Q 011993 41 ASWEFKEMVKALHGAGIEVILDVVYNHTNEADDANPYT 78 (473)
Q Consensus 41 ~~edl~~lv~~aH~~Gi~VilD~V~NH~~~~~~~~~~~ 78 (473)
+.+=|++|.+.|+++|+-+|+|=|..-+++ ...++
T Consensus 196 ~~~~l~~l~~lc~~~gillI~DEV~tG~gR---tG~~~ 230 (339)
T PF00202_consen 196 PPEYLRELRELCREHGILLIADEVQTGFGR---TGKFF 230 (339)
T ss_dssp -TTHHHHHHHHHHHTT-EEEEEETTTTTTT---TSSSS
T ss_pred ccchhhehcccccccccceecccccccccc---cCCcc
Confidence 347789999999999999999999999988 66665
No 289
>PRK08175 aminotransferase; Validated
Probab=20.15 E-value=1.2e+02 Score=30.34 Aligned_cols=31 Identities=16% Similarity=0.121 Sum_probs=26.5
Q ss_pred chHHHHHHHHHHHHHCCCEEEEEEecccccC
Q 011993 40 KASWEFKEMVKALHGAGIEVILDVVYNHTNE 70 (473)
Q Consensus 40 ~~~edl~~lv~~aH~~Gi~VilD~V~NH~~~ 70 (473)
-..++++++++.|+++|+.||.|-++.+...
T Consensus 181 ~~~~~~~~i~~~a~~~~i~ii~De~y~~l~~ 211 (395)
T PRK08175 181 VELEFFEKVVALAKRYDVLVVHDLAYADIVY 211 (395)
T ss_pred CCHHHHHHHHHHHHHcCcEEEEecchHhhcc
Confidence 4579999999999999999999988766543
No 290
>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic. This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.
Probab=20.10 E-value=89 Score=31.27 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHCCCEEEEEEec
Q 011993 42 SWEFKEMVKALHGAGIEVILDVVY 65 (473)
Q Consensus 42 ~edl~~lv~~aH~~Gi~VilD~V~ 65 (473)
+.+++++++.||++|+.||+|-..
T Consensus 147 v~dl~~I~~la~~~g~~vivD~a~ 170 (378)
T TIGR01329 147 IVDIRKISEMAHAQNALVVVDNTM 170 (378)
T ss_pred eecHHHHHHHHHHcCCEEEEECCC
Confidence 478999999999999999999874
No 291
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=20.05 E-value=53 Score=24.51 Aligned_cols=37 Identities=14% Similarity=0.092 Sum_probs=25.6
Q ss_pred CCcccCCCCCCCCCCCCCCchHHHHHHHHHHHHHCCCEEEE
Q 011993 21 TINFFSPMSRYAAGGGGPLKASWEFKEMVKALHGAGIEVIL 61 (473)
Q Consensus 21 ~~d~~~vdp~~Gt~~~~~~~~~edl~~lv~~aH~~Gi~Vil 61 (473)
..+++.|+|.|...|- +-.-++++++.|.++|++|+.
T Consensus 24 ~i~hT~V~~~~rGqGi----a~~L~~~~l~~a~~~~~kv~p 60 (78)
T PF14542_consen 24 VITHTEVPPELRGQGI----AKKLVEAALDYARENGLKVVP 60 (78)
T ss_dssp EEEEEEE-CSSSTTTH----HHHHHHHHHHHHHHTT-EEEE
T ss_pred EEEEEEECccccCCcH----HHHHHHHHHHHHHHCCCEEEE
Confidence 3456678888876422 226788999999999999983
Done!