Query 011994
Match_columns 473
No_of_seqs 274 out of 1855
Neff 4.6
Searched_HMMs 46136
Date Fri Mar 29 07:29:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011994.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011994hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK04220 2-phosphoglycerate ki 100.0 3.6E-43 7.7E-48 352.7 26.8 282 68-459 4-296 (301)
2 COG2074 2-phosphoglycerate kin 100.0 1.2E-41 2.5E-46 333.3 23.8 274 79-460 9-294 (299)
3 PRK12337 2-phosphoglycerate ki 100.0 3.6E-41 7.9E-46 353.9 27.6 288 67-460 164-468 (475)
4 PRK12338 hypothetical protein; 99.9 1.7E-25 3.7E-30 226.8 16.4 192 158-455 2-206 (319)
5 PRK12339 2-phosphoglycerate ki 99.9 8.4E-23 1.8E-27 194.2 16.0 182 159-447 2-191 (197)
6 PRK12337 2-phosphoglycerate ki 98.9 3.3E-09 7.2E-14 113.2 9.7 83 65-151 78-160 (475)
7 PF13671 AAA_33: AAA domain; P 98.8 9.6E-09 2.1E-13 89.8 8.2 84 162-263 1-84 (143)
8 KOG3347 Predicted nucleotide k 98.8 5.1E-09 1.1E-13 97.5 6.5 100 161-281 8-110 (176)
9 COG0552 FtsY Signal recognitio 98.8 6.9E-08 1.5E-12 99.3 13.6 106 89-199 72-182 (340)
10 TIGR01359 UMP_CMP_kin_fam UMP- 98.8 3E-08 6.4E-13 90.9 9.3 87 162-263 1-90 (183)
11 PRK14531 adenylate kinase; Pro 98.7 6.8E-08 1.5E-12 89.9 10.2 87 161-262 3-92 (183)
12 PRK14974 cell division protein 98.7 4.4E-07 9.5E-12 93.6 14.8 106 89-197 70-181 (336)
13 PLN02200 adenylate kinase fami 98.6 1.4E-07 3.1E-12 92.2 10.0 44 158-201 41-84 (234)
14 COG0645 Predicted kinase [Gene 98.6 1.6E-07 3.4E-12 88.7 9.6 86 161-263 2-90 (170)
15 PRK06762 hypothetical protein; 98.6 6.3E-08 1.4E-12 87.7 6.8 42 159-200 1-43 (166)
16 PLN02674 adenylate kinase 98.6 2.7E-07 5.8E-12 91.4 11.2 88 158-260 29-120 (244)
17 PF13207 AAA_17: AAA domain; P 98.6 8.4E-08 1.8E-12 81.9 6.4 32 162-193 1-32 (121)
18 PRK14532 adenylate kinase; Pro 98.6 2.3E-07 5E-12 85.8 9.6 39 162-200 2-40 (188)
19 COG0563 Adk Adenylate kinase a 98.6 1.5E-07 3.2E-12 88.8 8.5 84 162-260 2-89 (178)
20 PTZ00088 adenylate kinase 1; P 98.6 2.3E-07 5E-12 90.7 9.9 86 158-258 4-95 (229)
21 TIGR01351 adk adenylate kinase 98.6 2E-07 4.3E-12 88.4 9.1 84 163-261 2-90 (210)
22 PRK14527 adenylate kinase; Pro 98.6 2.4E-07 5.2E-12 86.5 9.1 43 158-200 4-46 (191)
23 PHA02530 pseT polynucleotide k 98.6 2.2E-07 4.8E-12 91.8 9.0 88 159-264 1-90 (300)
24 COG1102 Cmk Cytidylate kinase 98.5 3.9E-07 8.5E-12 85.9 9.3 41 161-201 1-41 (179)
25 TIGR01360 aden_kin_iso1 adenyl 98.5 4E-07 8.6E-12 83.1 9.2 39 162-200 5-43 (188)
26 PRK00279 adk adenylate kinase; 98.5 5.9E-07 1.3E-11 85.5 9.7 84 162-260 2-89 (215)
27 PRK14530 adenylate kinase; Pro 98.5 5.8E-07 1.3E-11 85.6 9.2 88 162-260 5-93 (215)
28 PLN02459 probable adenylate ki 98.5 6.4E-07 1.4E-11 89.7 9.8 90 158-262 27-122 (261)
29 cd01428 ADK Adenylate kinase ( 98.5 8.9E-07 1.9E-11 81.4 9.5 82 163-259 2-87 (194)
30 PF06414 Zeta_toxin: Zeta toxi 98.4 6.1E-07 1.3E-11 84.6 8.4 93 156-265 11-109 (199)
31 TIGR02173 cyt_kin_arch cytidyl 98.4 1.4E-06 3E-11 78.4 10.2 39 161-199 1-39 (171)
32 TIGR00064 ftsY signal recognit 98.4 7.1E-06 1.5E-10 82.1 14.4 99 89-197 10-113 (272)
33 PRK03839 putative kinase; Prov 98.4 5.2E-07 1.1E-11 83.1 5.5 36 162-197 2-37 (180)
34 PRK04040 adenylate kinase; Pro 98.4 2.2E-06 4.7E-11 81.2 9.8 42 159-200 1-44 (188)
35 PF00406 ADK: Adenylate kinase 98.4 1.4E-06 2.9E-11 78.3 7.8 78 165-257 1-82 (151)
36 PRK04182 cytidylate kinase; Pr 98.3 2.9E-06 6.3E-11 76.7 10.0 40 161-200 1-40 (180)
37 PRK13808 adenylate kinase; Pro 98.3 1.2E-05 2.6E-10 83.1 15.7 39 162-200 2-40 (333)
38 cd00227 CPT Chloramphenicol (C 98.3 2.5E-06 5.4E-11 78.6 9.5 90 161-259 3-95 (175)
39 TIGR01425 SRP54_euk signal rec 98.3 2.4E-06 5.1E-11 90.9 10.2 102 89-197 34-141 (429)
40 PRK02496 adk adenylate kinase; 98.3 3.3E-06 7.2E-11 78.0 9.8 41 161-201 2-42 (184)
41 PRK14529 adenylate kinase; Pro 98.3 1.8E-06 3.9E-11 84.5 8.3 87 162-263 2-91 (223)
42 PRK06217 hypothetical protein; 98.3 1.5E-06 3.3E-11 80.7 6.8 35 161-196 2-36 (183)
43 PRK07261 topology modulation p 98.3 1.3E-06 2.9E-11 81.0 6.3 33 162-195 2-34 (171)
44 PRK14528 adenylate kinase; Pro 98.3 4.9E-06 1.1E-10 78.2 9.7 80 162-256 3-86 (186)
45 KOG3079 Uridylate kinase/adeny 98.3 3.2E-06 6.9E-11 81.1 8.4 88 157-258 5-96 (195)
46 PRK14526 adenylate kinase; Pro 98.3 4E-06 8.7E-11 81.0 9.3 84 162-260 2-89 (211)
47 cd02021 GntK Gluconate kinase 98.2 2.4E-06 5.1E-11 76.1 6.6 35 162-197 1-35 (150)
48 PRK01184 hypothetical protein; 98.2 7.3E-06 1.6E-10 75.6 9.9 40 161-201 2-41 (184)
49 PRK10867 signal recognition pa 98.2 4E-06 8.7E-11 89.3 8.8 103 89-198 34-143 (433)
50 PRK08118 topology modulation p 98.2 3.3E-06 7.1E-11 78.3 7.2 33 162-195 3-35 (167)
51 PRK00131 aroK shikimate kinase 98.2 1.1E-05 2.3E-10 72.4 9.9 39 159-198 3-41 (175)
52 PRK12724 flagellar biosynthesi 98.2 2.1E-05 4.5E-10 83.8 13.6 101 89-197 160-265 (432)
53 TIGR03574 selen_PSTK L-seryl-t 98.2 5.8E-06 1.3E-10 80.4 8.5 77 162-262 1-81 (249)
54 TIGR01663 PNK-3'Pase polynucle 98.2 4.9E-06 1.1E-10 90.6 8.7 69 157-263 366-434 (526)
55 cd02020 CMPK Cytidine monophos 98.2 7.1E-06 1.5E-10 71.7 8.2 31 162-193 1-31 (147)
56 PRK13948 shikimate kinase; Pro 98.2 1.1E-05 2.5E-10 76.4 10.1 44 157-201 7-50 (182)
57 PRK00625 shikimate kinase; Pro 98.2 7.7E-06 1.7E-10 76.8 8.7 38 162-199 2-39 (173)
58 PRK10416 signal recognition pa 98.2 1.1E-05 2.4E-10 82.6 10.3 100 88-196 51-154 (318)
59 PRK13946 shikimate kinase; Pro 98.1 1.5E-05 3.2E-10 74.4 10.3 41 159-200 9-49 (184)
60 COG0541 Ffh Signal recognition 98.1 8.2E-06 1.8E-10 86.7 8.8 102 89-198 34-142 (451)
61 PRK12723 flagellar biosynthesi 98.1 3.8E-05 8.3E-10 80.9 13.8 98 89-197 114-219 (388)
62 TIGR00959 ffh signal recogniti 98.1 1E-05 2.2E-10 86.1 9.3 102 89-197 33-141 (428)
63 cd02027 APSK Adenosine 5'-phos 98.1 1.3E-05 2.9E-10 72.7 8.8 81 162-263 1-85 (149)
64 PRK00771 signal recognition pa 98.1 1.1E-05 2.4E-10 86.1 9.5 101 89-197 30-136 (437)
65 PRK08233 hypothetical protein; 98.1 7.3E-06 1.6E-10 74.4 6.8 38 159-196 2-39 (182)
66 PRK13947 shikimate kinase; Pro 98.1 1.7E-05 3.7E-10 71.9 9.0 36 162-198 3-38 (171)
67 TIGR01313 therm_gnt_kin carboh 98.1 1.4E-05 3E-10 72.2 8.3 32 163-195 1-32 (163)
68 TIGR00455 apsK adenylylsulfate 98.1 2.8E-05 6.1E-10 72.0 10.4 82 158-260 16-101 (184)
69 PRK08356 hypothetical protein; 98.1 1.4E-05 3E-10 75.2 8.3 41 160-201 5-45 (195)
70 PRK05541 adenylylsulfate kinas 98.0 1.2E-05 2.5E-10 73.9 7.0 43 157-199 4-50 (176)
71 KOG0781 Signal recognition par 98.0 3.5E-05 7.5E-10 82.9 10.9 104 92-198 308-420 (587)
72 PRK13949 shikimate kinase; Pro 98.0 2.2E-05 4.8E-10 73.0 8.1 35 162-197 3-37 (169)
73 PF01583 APS_kinase: Adenylyls 98.0 2.3E-05 5E-10 73.1 7.7 42 159-200 1-46 (156)
74 KOG0780 Signal recognition par 98.0 2.3E-05 5.1E-10 82.4 8.5 100 89-199 35-144 (483)
75 cd00464 SK Shikimate kinase (S 98.0 5E-05 1.1E-09 67.2 9.4 35 163-198 2-36 (154)
76 PLN02748 tRNA dimethylallyltra 97.9 1E-05 2.2E-10 87.0 5.8 102 158-266 20-129 (468)
77 COG0703 AroK Shikimate kinase 97.9 6.2E-06 1.3E-10 78.1 2.9 38 161-198 3-40 (172)
78 PF07931 CPT: Chloramphenicol 97.9 5.6E-05 1.2E-09 71.6 9.0 95 161-263 2-97 (174)
79 COG0529 CysC Adenylylsulfate k 97.9 7E-05 1.5E-09 71.9 9.6 45 157-201 20-68 (197)
80 KOG3354 Gluconate kinase [Carb 97.9 3.5E-05 7.7E-10 72.7 7.1 83 160-263 12-98 (191)
81 PRK05537 bifunctional sulfate 97.9 9.3E-05 2E-09 81.3 11.6 44 157-200 389-437 (568)
82 TIGR00017 cmk cytidylate kinas 97.9 9.1E-05 2E-09 71.9 10.2 39 160-198 2-40 (217)
83 PRK03731 aroL shikimate kinase 97.9 8.6E-05 1.9E-09 67.6 9.4 38 162-200 4-41 (171)
84 PF13238 AAA_18: AAA domain; P 97.8 5.7E-05 1.2E-09 64.1 7.2 22 163-184 1-22 (129)
85 PRK06547 hypothetical protein; 97.8 3.6E-05 7.8E-10 72.2 5.6 39 157-196 12-50 (172)
86 PRK05057 aroK shikimate kinase 97.8 0.00015 3.3E-09 67.4 9.8 38 160-198 4-41 (172)
87 COG4639 Predicted kinase [Gene 97.8 9.8E-05 2.1E-09 69.5 8.2 83 160-264 2-84 (168)
88 PRK00889 adenylylsulfate kinas 97.8 9.9E-05 2.1E-09 67.7 8.1 42 159-200 3-48 (175)
89 PRK06696 uridine kinase; Valid 97.7 4.8E-05 1E-09 73.1 5.3 40 157-196 19-62 (223)
90 COG1936 Predicted nucleotide k 97.7 3.7E-05 8E-10 73.3 4.2 37 161-198 1-37 (180)
91 TIGR03499 FlhF flagellar biosy 97.7 0.00014 3.1E-09 72.9 8.6 93 88-196 138-236 (282)
92 PRK11889 flhF flagellar biosyn 97.7 0.00021 4.6E-09 76.1 10.2 104 80-196 174-281 (436)
93 PRK08154 anaerobic benzoate ca 97.7 0.00051 1.1E-08 69.8 12.5 41 157-198 130-170 (309)
94 PLN02840 tRNA dimethylallyltra 97.6 6.3E-05 1.4E-09 80.1 5.7 104 157-268 18-130 (421)
95 PRK00091 miaA tRNA delta(2)-is 97.6 0.00019 4E-09 73.5 8.8 41 159-200 3-45 (307)
96 PRK05506 bifunctional sulfate 97.6 0.00013 2.8E-09 80.7 8.0 82 159-261 459-544 (632)
97 PRK10078 ribose 1,5-bisphospho 97.6 4.8E-05 1E-09 70.9 4.0 30 161-190 3-32 (186)
98 PLN02199 shikimate kinase 97.6 0.00041 8.8E-09 71.1 10.9 41 160-200 102-142 (303)
99 PLN02165 adenylate isopentenyl 97.6 0.00013 2.7E-09 75.7 7.2 37 158-195 41-77 (334)
100 PF00004 AAA: ATPase family as 97.5 8.2E-05 1.8E-09 63.3 3.8 27 163-189 1-27 (132)
101 cd02022 DPCK Dephospho-coenzym 97.5 0.00012 2.6E-09 68.0 4.8 38 162-200 1-38 (179)
102 TIGR03263 guanyl_kin guanylate 97.5 0.00023 4.9E-09 65.1 6.2 28 161-188 2-29 (180)
103 PRK13973 thymidylate kinase; P 97.5 0.00083 1.8E-08 64.3 10.2 86 160-259 3-99 (213)
104 PF08433 KTI12: Chromatin asso 97.4 0.00033 7.2E-09 70.4 7.6 79 162-263 3-85 (270)
105 PRK05703 flhF flagellar biosyn 97.4 0.00037 8E-09 74.1 8.2 93 89-197 166-264 (424)
106 PRK14730 coaE dephospho-CoA ki 97.4 0.00018 3.9E-09 68.4 5.3 40 161-200 2-41 (195)
107 PRK03846 adenylylsulfate kinas 97.4 0.00058 1.3E-08 64.4 8.5 43 158-200 22-68 (198)
108 PLN02842 nucleotide kinase 97.4 0.00041 8.8E-09 75.5 8.4 37 164-200 1-37 (505)
109 PRK00023 cmk cytidylate kinase 97.4 0.00017 3.6E-09 70.2 4.9 38 160-197 4-41 (225)
110 COG3265 GntK Gluconate kinase 97.4 0.00031 6.7E-09 65.8 6.3 46 166-211 1-48 (161)
111 PRK00081 coaE dephospho-CoA ki 97.4 0.00023 4.9E-09 67.4 5.6 40 160-200 2-41 (194)
112 PRK06995 flhF flagellar biosyn 97.4 0.00055 1.2E-08 74.2 9.2 80 88-184 200-280 (484)
113 PRK14729 miaA tRNA delta(2)-is 97.4 0.00031 6.7E-09 71.9 6.9 100 159-267 3-111 (300)
114 COG0324 MiaA tRNA delta(2)-iso 97.4 0.00061 1.3E-08 70.0 8.8 102 159-268 2-112 (308)
115 smart00763 AAA_PrkA PrkA AAA d 97.4 0.00031 6.7E-09 73.6 6.4 96 89-186 3-104 (361)
116 TIGR00174 miaA tRNA isopenteny 97.4 0.00025 5.4E-09 72.1 5.4 98 162-267 1-107 (287)
117 PRK05480 uridine/cytidine kina 97.3 0.00022 4.7E-09 67.4 4.5 39 158-196 4-44 (209)
118 TIGR02322 phosphon_PhnN phosph 97.3 0.00046 1E-08 63.3 6.5 25 162-186 3-27 (179)
119 cd01672 TMPK Thymidine monopho 97.3 0.0015 3.2E-08 59.6 9.7 29 161-189 1-32 (200)
120 PRK05439 pantothenate kinase; 97.3 0.00061 1.3E-08 70.0 7.7 49 148-196 71-128 (311)
121 COG0237 CoaE Dephospho-CoA kin 97.3 0.00035 7.7E-09 67.5 5.7 40 160-200 2-41 (201)
122 PRK13951 bifunctional shikimat 97.3 0.001 2.3E-08 72.0 9.8 37 161-198 1-37 (488)
123 smart00382 AAA ATPases associa 97.3 0.00024 5.2E-09 58.7 3.7 28 160-187 2-29 (148)
124 PRK12726 flagellar biosynthesi 97.3 0.00058 1.2E-08 72.4 7.1 96 90-197 148-247 (407)
125 PF05496 RuvB_N: Holliday junc 97.3 0.00063 1.4E-08 67.4 6.8 30 160-189 50-79 (233)
126 PRK13477 bifunctional pantoate 97.2 0.00027 5.9E-09 77.0 4.5 40 158-197 282-321 (512)
127 PRK14733 coaE dephospho-CoA ki 97.2 0.00045 9.9E-09 66.9 5.5 42 158-199 4-45 (204)
128 PRK14021 bifunctional shikimat 97.2 0.0014 3E-08 71.8 9.7 37 162-198 8-44 (542)
129 COG2256 MGS1 ATPase related to 97.2 0.00034 7.3E-09 74.2 4.7 109 150-270 38-152 (436)
130 PF00448 SRP54: SRP54-type pro 97.2 0.00022 4.7E-09 68.2 2.9 38 160-197 1-42 (196)
131 TIGR00152 dephospho-CoA kinase 97.2 0.00046 1E-08 64.3 4.9 39 162-200 1-39 (188)
132 COG0572 Udk Uridine kinase [Nu 97.2 0.00035 7.7E-09 68.6 4.2 41 158-198 6-48 (218)
133 PRK14723 flhF flagellar biosyn 97.2 0.0013 2.7E-08 74.8 9.1 91 89-196 130-227 (767)
134 TIGR00041 DTMP_kinase thymidyl 97.2 0.0027 5.9E-08 58.7 9.7 26 160-185 3-28 (195)
135 COG0283 Cmk Cytidylate kinase 97.2 0.00059 1.3E-08 67.1 5.4 38 160-197 4-41 (222)
136 cd02024 NRK1 Nicotinamide ribo 97.2 0.00035 7.7E-09 66.7 3.8 35 162-197 1-36 (187)
137 PRK11860 bifunctional 3-phosph 97.2 0.0023 5.1E-08 71.4 10.8 38 161-198 443-480 (661)
138 COG4088 Predicted nucleotide k 97.1 0.00092 2E-08 66.0 6.6 23 162-184 3-25 (261)
139 PRK00300 gmk guanylate kinase; 97.1 0.0012 2.6E-08 61.7 7.1 27 159-185 4-30 (205)
140 PRK14721 flhF flagellar biosyn 97.1 0.0024 5.1E-08 68.3 10.0 81 87-184 135-215 (420)
141 PRK14737 gmk guanylate kinase; 97.1 0.00092 2E-08 63.3 6.3 26 159-184 3-28 (186)
142 PF00485 PRK: Phosphoribulokin 97.1 0.00039 8.3E-09 65.3 3.4 24 162-185 1-24 (194)
143 PRK14722 flhF flagellar biosyn 97.1 0.0025 5.4E-08 67.1 9.7 96 87-196 77-179 (374)
144 TIGR00554 panK_bact pantothena 97.1 0.0013 2.8E-08 67.0 7.3 40 146-185 45-87 (290)
145 PRK11545 gntK gluconate kinase 97.1 0.00088 1.9E-08 61.8 5.3 29 166-195 1-29 (163)
146 PRK00698 tmk thymidylate kinas 97.0 0.0043 9.3E-08 57.5 9.9 25 160-184 3-27 (205)
147 PRK14731 coaE dephospho-CoA ki 97.0 0.00095 2.1E-08 63.9 5.5 38 158-197 3-40 (208)
148 PRK05800 cobU adenosylcobinami 97.0 0.00048 1E-08 64.5 3.4 27 161-187 2-28 (170)
149 TIGR00390 hslU ATP-dependent p 97.0 0.0011 2.3E-08 71.1 6.3 34 157-190 44-77 (441)
150 cd02019 NK Nucleoside/nucleoti 97.0 0.00058 1.3E-08 54.5 3.2 23 162-184 1-23 (69)
151 PRK13975 thymidylate kinase; P 97.0 0.00067 1.5E-08 62.9 4.0 28 160-187 2-29 (196)
152 PRK09270 nucleoside triphospha 97.0 0.0019 4.1E-08 62.4 6.8 30 156-185 29-58 (229)
153 PTZ00301 uridine kinase; Provi 97.0 0.00062 1.4E-08 66.0 3.5 37 161-197 4-46 (210)
154 PF01202 SKI: Shikimate kinase 96.9 0.0029 6.3E-08 57.7 7.4 30 169-198 1-30 (158)
155 PRK09518 bifunctional cytidyla 96.9 0.00082 1.8E-08 75.6 4.6 37 162-198 3-39 (712)
156 PRK07667 uridine kinase; Provi 96.9 0.00097 2.1E-08 63.0 4.4 28 158-185 15-42 (193)
157 PRK12727 flagellar biosynthesi 96.9 0.0032 7E-08 69.2 8.7 94 85-196 293-392 (559)
158 PRK05201 hslU ATP-dependent pr 96.9 0.0018 3.9E-08 69.4 6.6 32 159-190 49-80 (443)
159 TIGR00235 udk uridine kinase. 96.9 0.0011 2.5E-08 62.7 4.6 38 158-195 4-43 (207)
160 PRK14734 coaE dephospho-CoA ki 96.9 0.0016 3.4E-08 62.3 5.5 39 161-200 2-40 (200)
161 PF07728 AAA_5: AAA domain (dy 96.9 0.0009 2E-08 58.8 3.6 27 163-189 2-28 (139)
162 PRK12269 bifunctional cytidyla 96.8 0.0012 2.6E-08 76.0 5.2 38 161-198 35-72 (863)
163 PF13521 AAA_28: AAA domain; P 96.8 0.00096 2.1E-08 60.5 3.6 89 163-266 2-90 (163)
164 TIGR02881 spore_V_K stage V sp 96.8 0.0024 5.3E-08 62.8 6.6 26 159-184 41-66 (261)
165 KOG3078 Adenylate kinase [Nucl 96.8 0.0018 3.8E-08 64.4 5.6 83 159-256 14-100 (235)
166 PLN02348 phosphoribulokinase 96.8 0.0014 3E-08 69.5 5.2 30 156-185 45-74 (395)
167 cd00009 AAA The AAA+ (ATPases 96.8 0.0028 6E-08 53.2 6.1 30 160-189 19-51 (151)
168 PF01591 6PF2K: 6-phosphofruct 96.8 0.0046 9.9E-08 60.9 8.4 41 159-199 11-56 (222)
169 PF06309 Torsin: Torsin; Inte 96.8 0.0035 7.5E-08 57.1 7.0 29 156-184 49-77 (127)
170 cd02028 UMPK_like Uridine mono 96.8 0.0009 2E-08 62.7 3.3 36 162-197 1-40 (179)
171 COG1220 HslU ATP-dependent pro 96.8 0.0039 8.6E-08 65.4 8.2 73 105-190 8-80 (444)
172 TIGR00763 lon ATP-dependent pr 96.8 0.011 2.4E-07 67.3 12.5 31 159-189 346-376 (775)
173 cd02023 UMPK Uridine monophosp 96.8 0.001 2.2E-08 62.2 3.5 36 162-197 1-38 (198)
174 CHL00195 ycf46 Ycf46; Provisio 96.8 0.012 2.6E-07 64.1 12.0 32 158-189 257-288 (489)
175 PRK15453 phosphoribulokinase; 96.8 0.0012 2.5E-08 67.5 4.0 40 158-197 3-46 (290)
176 KOG0733 Nuclear AAA ATPase (VC 96.7 0.0054 1.2E-07 68.2 8.6 33 158-190 221-253 (802)
177 smart00072 GuKc Guanylate kina 96.7 0.0052 1.1E-07 57.4 7.1 30 160-189 2-33 (184)
178 PRK09825 idnK D-gluconate kina 96.6 0.0019 4E-08 60.6 4.0 33 161-194 4-36 (176)
179 PRK14738 gmk guanylate kinase; 96.6 0.0016 3.6E-08 62.1 3.6 30 154-183 7-36 (206)
180 TIGR02880 cbbX_cfxQ probable R 96.6 0.0058 1.3E-07 61.5 7.6 24 161-184 59-82 (284)
181 KOG1384 tRNA delta(2)-isopente 96.6 0.0026 5.7E-08 66.0 5.0 95 159-265 6-113 (348)
182 TIGR03575 selen_PSTK_euk L-ser 96.6 0.0046 1E-07 64.4 6.8 24 162-185 1-24 (340)
183 PLN00020 ribulose bisphosphate 96.6 0.0026 5.6E-08 67.4 4.8 34 157-190 145-178 (413)
184 PLN02422 dephospho-CoA kinase 96.5 0.0037 8E-08 61.9 5.4 38 162-200 3-40 (232)
185 TIGR00382 clpX endopeptidase C 96.5 0.0055 1.2E-07 65.4 7.0 30 161-190 117-146 (413)
186 PRK03992 proteasome-activating 96.5 0.0046 1E-07 64.8 6.4 32 158-189 163-194 (389)
187 cd02025 PanK Pantothenate kina 96.5 0.002 4.2E-08 62.6 3.3 24 162-185 1-24 (220)
188 PHA00729 NTP-binding motif con 96.5 0.003 6.6E-08 62.4 4.6 26 160-185 17-42 (226)
189 CHL00181 cbbX CbbX; Provisiona 96.5 0.0061 1.3E-07 61.6 6.9 26 159-184 58-83 (287)
190 PF01745 IPT: Isopentenyl tran 96.5 0.0028 6.1E-08 62.7 4.3 34 162-196 3-36 (233)
191 PRK05342 clpX ATP-dependent pr 96.5 0.007 1.5E-07 64.4 7.5 30 161-190 109-138 (412)
192 PF03215 Rad17: Rad17 cell cyc 96.5 0.0035 7.5E-08 68.6 5.2 30 160-189 45-74 (519)
193 COG0194 Gmk Guanylate kinase [ 96.5 0.012 2.5E-07 57.0 8.1 32 159-190 3-34 (191)
194 TIGR01618 phage_P_loop phage n 96.4 0.006 1.3E-07 59.9 6.3 36 157-195 9-44 (220)
195 PRK07429 phosphoribulokinase; 96.4 0.003 6.5E-08 65.2 4.4 29 157-185 5-33 (327)
196 PLN02924 thymidylate kinase 96.4 0.018 4E-07 56.1 9.5 29 157-185 13-41 (220)
197 TIGR01242 26Sp45 26S proteasom 96.4 0.0072 1.6E-07 62.4 7.0 32 158-189 154-185 (364)
198 PRK04195 replication factor C 96.4 0.0047 1E-07 66.3 5.7 32 159-190 38-69 (482)
199 PTZ00451 dephospho-CoA kinase; 96.4 0.0047 1E-07 61.5 5.3 39 161-200 2-41 (244)
200 KOG0635 Adenosine 5'-phosphosu 96.4 0.0034 7.3E-08 59.5 3.8 43 159-201 30-76 (207)
201 PRK15455 PrkA family serine pr 96.4 0.01 2.3E-07 66.0 8.1 96 88-185 20-128 (644)
202 COG0466 Lon ATP-dependent Lon 96.3 0.021 4.6E-07 64.5 10.5 59 132-190 318-380 (782)
203 KOG0743 AAA+-type ATPase [Post 96.3 0.0058 1.3E-07 65.7 5.9 42 162-203 237-285 (457)
204 PRK06620 hypothetical protein; 96.3 0.0082 1.8E-07 58.1 6.4 85 161-265 45-129 (214)
205 PRK13342 recombination factor 96.3 0.0054 1.2E-07 64.6 5.5 34 156-189 32-65 (413)
206 TIGR00635 ruvB Holliday juncti 96.3 0.0047 1E-07 61.3 4.8 31 158-188 28-58 (305)
207 PTZ00454 26S protease regulato 96.3 0.0084 1.8E-07 63.5 6.9 33 158-190 177-209 (398)
208 PRK09087 hypothetical protein; 96.3 0.0046 1E-07 60.3 4.4 87 162-264 46-132 (226)
209 PF01121 CoaE: Dephospho-CoA k 96.3 0.0037 8E-08 59.3 3.6 35 161-197 1-35 (180)
210 TIGR02640 gas_vesic_GvpN gas v 96.3 0.0042 9E-08 61.6 4.1 29 162-190 23-51 (262)
211 TIGR03689 pup_AAA proteasome A 96.3 0.0083 1.8E-07 65.7 6.7 33 157-189 213-245 (512)
212 COG1428 Deoxynucleoside kinase 96.2 0.0041 8.9E-08 61.1 3.8 30 160-189 4-33 (216)
213 PRK14961 DNA polymerase III su 96.2 0.0083 1.8E-07 62.2 6.3 32 156-187 34-65 (363)
214 TIGR01241 FtsH_fam ATP-depende 96.2 0.0093 2E-07 64.2 6.9 34 157-190 85-118 (495)
215 PRK08099 bifunctional DNA-bind 96.2 0.0058 1.2E-07 64.7 5.2 65 121-198 193-259 (399)
216 PRK06761 hypothetical protein; 96.2 0.0046 1E-07 62.9 4.3 68 372-442 180-265 (282)
217 PRK14962 DNA polymerase III su 96.2 0.0075 1.6E-07 65.2 6.1 32 156-187 32-63 (472)
218 PRK14732 coaE dephospho-CoA ki 96.2 0.0055 1.2E-07 58.6 4.6 38 162-200 1-38 (196)
219 COG1618 Predicted nucleotide k 96.2 0.0043 9.4E-08 59.1 3.7 28 158-185 3-30 (179)
220 PF05729 NACHT: NACHT domain 96.2 0.0039 8.5E-08 54.8 3.2 24 161-184 1-24 (166)
221 cd01673 dNK Deoxyribonucleosid 96.2 0.0039 8.5E-08 57.8 3.3 27 162-188 1-27 (193)
222 PF00910 RNA_helicase: RNA hel 96.2 0.0034 7.3E-08 54.0 2.6 23 163-185 1-23 (107)
223 KOG0744 AAA+-type ATPase [Post 96.2 0.016 3.5E-07 60.6 7.9 27 161-187 178-204 (423)
224 cd02030 NDUO42 NADH:Ubiquinone 96.2 0.016 3.6E-07 55.7 7.5 28 162-189 1-28 (219)
225 TIGR01650 PD_CobS cobaltochela 96.1 0.0045 9.7E-08 64.2 3.7 28 162-189 66-93 (327)
226 PLN03046 D-glycerate 3-kinase; 96.1 0.014 3.1E-07 62.8 7.5 26 159-184 211-236 (460)
227 TIGR02639 ClpA ATP-dependent C 96.1 0.018 4E-07 65.1 8.8 33 157-189 480-513 (731)
228 PRK11034 clpA ATP-dependent Cl 96.1 0.019 4.2E-07 65.5 8.8 33 157-189 484-517 (758)
229 PRK00080 ruvB Holliday junctio 96.1 0.0063 1.4E-07 61.9 4.5 32 158-189 49-80 (328)
230 TIGR00150 HI0065_YjeE ATPase, 96.1 0.006 1.3E-07 55.7 3.9 29 160-188 22-50 (133)
231 PF07724 AAA_2: AAA domain (Cd 96.1 0.007 1.5E-07 56.8 4.4 26 161-186 4-29 (171)
232 PRK03333 coaE dephospho-CoA ki 96.1 0.0075 1.6E-07 63.6 5.1 38 162-200 3-40 (395)
233 TIGR03420 DnaA_homol_Hda DnaA 96.1 0.0081 1.8E-07 56.6 4.9 28 157-184 35-62 (226)
234 cd04155 Arl3 Arl3 subfamily. 96.1 0.0077 1.7E-07 53.8 4.5 34 150-183 4-37 (173)
235 COG1223 Predicted ATPase (AAA+ 96.0 0.011 2.5E-07 60.3 5.9 32 159-190 150-181 (368)
236 PTZ00361 26 proteosome regulat 96.0 0.014 3E-07 62.8 6.8 32 158-189 215-246 (438)
237 COG1703 ArgK Putative periplas 96.0 0.019 4.1E-07 59.3 7.3 38 147-184 37-75 (323)
238 PHA02544 44 clamp loader, smal 96.0 0.01 2.2E-07 59.3 5.3 33 156-188 39-71 (316)
239 PRK14956 DNA polymerase III su 96.0 0.012 2.6E-07 64.1 6.1 32 156-187 36-67 (484)
240 cd00544 CobU Adenosylcobinamid 96.0 0.021 4.6E-07 53.6 7.0 26 162-187 1-26 (169)
241 PTZ00322 6-phosphofructo-2-kin 95.9 0.012 2.7E-07 65.8 6.2 41 160-200 215-259 (664)
242 PLN02796 D-glycerate 3-kinase 95.9 0.0081 1.7E-07 62.9 4.4 28 158-185 98-125 (347)
243 KOG2004 Mitochondrial ATP-depe 95.9 0.044 9.5E-07 62.2 10.3 39 151-189 429-467 (906)
244 cd00071 GMPK Guanosine monopho 95.9 0.0061 1.3E-07 54.8 3.0 24 162-185 1-24 (137)
245 PRK09435 membrane ATPase/prote 95.9 0.017 3.6E-07 60.1 6.6 36 149-184 44-80 (332)
246 TIGR01243 CDC48 AAA family ATP 95.9 0.016 3.5E-07 65.4 7.0 33 158-190 485-517 (733)
247 COG0464 SpoVK ATPases of the A 95.9 0.018 3.8E-07 61.8 7.0 34 157-190 273-306 (494)
248 PRK14960 DNA polymerase III su 95.9 0.013 2.8E-07 66.0 6.1 32 156-187 33-64 (702)
249 PRK12402 replication factor C 95.9 0.011 2.5E-07 58.9 5.1 24 162-185 38-61 (337)
250 PRK14955 DNA polymerase III su 95.9 0.014 3.1E-07 61.3 6.0 31 157-187 35-65 (397)
251 cd03115 SRP The signal recogni 95.9 0.0073 1.6E-07 55.2 3.4 35 162-196 2-40 (173)
252 KOG3220 Similar to bacterial d 95.8 0.048 1E-06 53.7 9.1 38 161-199 2-39 (225)
253 COG4240 Predicted kinase [Gene 95.8 0.011 2.5E-07 59.2 4.9 29 156-184 46-74 (300)
254 PRK06921 hypothetical protein; 95.8 0.071 1.5E-06 53.4 10.6 25 160-184 117-141 (266)
255 PLN02318 phosphoribulokinase/u 95.8 0.015 3.2E-07 65.0 6.1 38 158-195 63-100 (656)
256 PRK14949 DNA polymerase III su 95.8 0.014 3E-07 67.6 6.1 32 156-187 34-65 (944)
257 PF13191 AAA_16: AAA ATPase do 95.8 0.0075 1.6E-07 54.4 3.2 29 156-184 20-48 (185)
258 PRK10787 DNA-binding ATP-depen 95.8 0.071 1.5E-06 61.2 11.7 100 89-189 254-378 (784)
259 COG2019 AdkA Archaeal adenylat 95.8 0.012 2.5E-07 56.6 4.5 41 160-200 4-45 (189)
260 cd01120 RecA-like_NTPases RecA 95.8 0.007 1.5E-07 52.6 2.8 23 162-184 1-23 (165)
261 PF00625 Guanylate_kin: Guanyl 95.8 0.012 2.6E-07 54.7 4.4 26 160-185 2-27 (183)
262 PF13401 AAA_22: AAA domain; P 95.8 0.0076 1.6E-07 51.7 2.9 25 160-184 4-28 (131)
263 PRK14963 DNA polymerase III su 95.8 0.015 3.3E-07 63.4 5.9 31 156-186 32-62 (504)
264 KOG3062 RNA polymerase II elon 95.8 0.033 7E-07 55.9 7.6 81 162-263 3-88 (281)
265 COG2255 RuvB Holliday junction 95.7 0.023 5.1E-07 58.5 6.8 31 158-188 50-80 (332)
266 PRK08116 hypothetical protein; 95.7 0.025 5.4E-07 56.7 6.9 30 160-189 114-146 (268)
267 cd02029 PRK_like Phosphoribulo 95.7 0.0062 1.3E-07 61.9 2.6 36 162-197 1-40 (277)
268 PHA02575 1 deoxynucleoside mon 95.7 0.014 3E-07 57.9 4.9 40 161-201 1-41 (227)
269 PHA02244 ATPase-like protein 95.7 0.016 3.5E-07 61.4 5.7 39 153-193 114-152 (383)
270 PRK07933 thymidylate kinase; V 95.7 0.063 1.4E-06 51.9 9.3 24 161-184 1-24 (213)
271 PLN03025 replication factor C 95.7 0.013 2.9E-07 59.3 4.9 23 162-184 36-58 (319)
272 PRK14958 DNA polymerase III su 95.7 0.017 3.8E-07 63.0 6.1 32 156-187 34-65 (509)
273 PRK14964 DNA polymerase III su 95.7 0.016 3.6E-07 63.1 5.8 32 156-187 31-62 (491)
274 cd01918 HprK_C HprK/P, the bif 95.7 0.011 2.4E-07 55.0 3.8 33 161-195 15-47 (149)
275 PF13189 Cytidylate_kin2: Cyti 95.7 0.036 7.7E-07 51.9 7.3 38 162-200 1-38 (179)
276 KOG0730 AAA+-type ATPase [Post 95.7 0.022 4.7E-07 63.8 6.6 32 158-189 466-497 (693)
277 PF02223 Thymidylate_kin: Thym 95.7 0.042 9E-07 50.8 7.6 79 165-259 1-90 (186)
278 PRK12377 putative replication 95.6 0.019 4.1E-07 57.2 5.7 24 161-184 102-125 (248)
279 PRK08084 DNA replication initi 95.6 0.016 3.4E-07 56.6 4.9 26 160-185 45-70 (235)
280 PRK06645 DNA polymerase III su 95.6 0.014 3E-07 63.8 4.9 33 156-188 39-71 (507)
281 CHL00176 ftsH cell division pr 95.6 0.016 3.4E-07 65.1 5.4 33 158-190 214-246 (638)
282 cd01131 PilT Pilus retraction 95.6 0.011 2.3E-07 56.3 3.5 24 162-185 3-26 (198)
283 COG1222 RPT1 ATP-dependent 26S 95.6 0.027 6E-07 59.4 6.8 32 158-189 183-214 (406)
284 COG1219 ClpX ATP-dependent pro 95.6 0.012 2.7E-07 61.4 4.1 30 162-191 99-128 (408)
285 KOG1970 Checkpoint RAD17-RFC c 95.6 0.012 2.7E-07 64.7 4.3 30 160-189 110-139 (634)
286 TIGR01243 CDC48 AAA family ATP 95.6 0.025 5.3E-07 64.0 6.8 32 158-189 210-241 (733)
287 cd01983 Fer4_NifH The Fer4_Nif 95.5 0.015 3.3E-07 46.1 3.8 31 162-192 1-34 (99)
288 PRK06526 transposase; Provisio 95.5 0.016 3.6E-07 57.7 4.8 25 160-184 98-122 (254)
289 COG1072 CoaA Panthothenate kin 95.5 0.031 6.8E-07 57.0 6.7 30 156-185 78-107 (283)
290 PF03266 NTPase_1: NTPase; In 95.5 0.011 2.5E-07 55.3 3.4 23 162-184 1-23 (168)
291 PRK08903 DnaA regulatory inact 95.5 0.034 7.3E-07 53.1 6.7 25 160-184 42-66 (227)
292 PRK14969 DNA polymerase III su 95.5 0.024 5.1E-07 62.2 6.2 31 156-186 34-64 (527)
293 TIGR03015 pepcterm_ATPase puta 95.5 0.026 5.6E-07 54.7 5.8 26 160-185 43-68 (269)
294 TIGR01526 nadR_NMN_Atrans nico 95.5 0.014 3.1E-07 60.0 4.2 30 161-190 163-192 (325)
295 PRK14957 DNA polymerase III su 95.5 0.017 3.7E-07 63.7 5.1 31 156-186 34-64 (546)
296 PF07726 AAA_3: ATPase family 95.5 0.0088 1.9E-07 54.8 2.4 40 162-201 1-43 (131)
297 KOG3308 Uncharacterized protei 95.5 0.013 2.7E-07 57.7 3.5 39 159-197 3-41 (225)
298 PF13479 AAA_24: AAA domain 95.5 0.013 2.9E-07 56.2 3.7 29 159-191 2-30 (213)
299 PF08298 AAA_PrkA: PrkA AAA do 95.4 0.028 6E-07 59.1 6.1 95 89-185 3-113 (358)
300 PRK05896 DNA polymerase III su 95.4 0.024 5.2E-07 63.3 6.0 32 155-186 33-64 (605)
301 PRK07994 DNA polymerase III su 95.4 0.023 4.9E-07 63.9 5.8 31 156-186 34-64 (647)
302 PRK13976 thymidylate kinase; P 95.4 0.073 1.6E-06 51.5 8.5 50 408-459 151-203 (209)
303 KOG1969 DNA replication checkp 95.3 0.013 2.8E-07 66.4 3.6 30 161-190 327-356 (877)
304 PRK14951 DNA polymerase III su 95.3 0.028 6E-07 62.9 6.1 31 156-186 34-64 (618)
305 PRK14952 DNA polymerase III su 95.3 0.028 6.1E-07 62.5 6.1 31 156-186 31-61 (584)
306 PF13086 AAA_11: AAA domain; P 95.3 0.014 3.1E-07 53.8 3.2 24 161-184 18-41 (236)
307 PRK12323 DNA polymerase III su 95.3 0.029 6.3E-07 63.3 6.0 32 156-187 34-65 (700)
308 PF13173 AAA_14: AAA domain 95.2 0.03 6.6E-07 49.1 5.0 25 161-185 3-27 (128)
309 PTZ00202 tuzin; Provisional 95.2 0.17 3.6E-06 55.4 11.3 43 159-201 285-332 (550)
310 PRK10751 molybdopterin-guanine 95.2 0.018 3.8E-07 54.8 3.6 27 159-185 5-31 (173)
311 KOG0737 AAA+-type ATPase [Post 95.2 0.0097 2.1E-07 62.7 2.0 34 157-190 124-157 (386)
312 PF13245 AAA_19: Part of AAA d 95.2 0.02 4.3E-07 47.1 3.4 24 161-184 11-35 (76)
313 PRK08691 DNA polymerase III su 95.2 0.032 6.9E-07 63.2 6.1 32 156-187 34-65 (709)
314 PF08303 tRNA_lig_kinase: tRNA 95.2 0.014 3E-07 55.5 2.8 34 162-196 1-35 (168)
315 PRK13341 recombination factor 95.2 0.025 5.4E-07 64.3 5.3 34 156-189 48-81 (725)
316 cd02026 PRK Phosphoribulokinas 95.2 0.017 3.8E-07 58.0 3.6 24 162-185 1-24 (273)
317 PRK14954 DNA polymerase III su 95.2 0.033 7.2E-07 62.3 6.1 33 155-187 33-65 (620)
318 COG1419 FlhF Flagellar GTP-bin 95.2 0.018 3.9E-07 61.4 3.8 39 159-197 202-246 (407)
319 TIGR00678 holB DNA polymerase 95.2 0.029 6.2E-07 52.2 4.8 31 156-186 10-40 (188)
320 PRK06835 DNA replication prote 95.1 0.038 8.2E-07 57.3 6.0 24 161-184 184-207 (329)
321 PRK09183 transposase/IS protei 95.1 0.035 7.6E-07 55.3 5.4 25 160-184 102-126 (259)
322 PRK14490 putative bifunctional 95.1 0.02 4.3E-07 59.6 3.7 28 158-185 3-30 (369)
323 PRK09111 DNA polymerase III su 95.0 0.038 8.2E-07 61.6 6.1 32 156-187 42-73 (598)
324 PF08477 Miro: Miro-like prote 95.0 0.022 4.7E-07 48.1 3.3 23 163-185 2-24 (119)
325 TIGR02397 dnaX_nterm DNA polym 95.0 0.033 7.2E-07 56.2 5.1 32 156-187 32-63 (355)
326 PRK08939 primosomal protein Dn 95.0 0.16 3.5E-06 52.1 10.1 39 160-198 156-199 (306)
327 KOG0731 AAA+-type ATPase conta 95.0 0.038 8.3E-07 63.0 6.0 34 157-190 341-374 (774)
328 KOG0738 AAA+-type ATPase [Post 95.0 0.056 1.2E-06 57.8 6.7 42 149-190 233-275 (491)
329 cd01124 KaiC KaiC is a circadi 95.0 0.019 4.2E-07 52.3 3.0 23 162-184 1-23 (187)
330 COG0470 HolB ATPase involved i 95.0 0.031 6.8E-07 55.2 4.7 31 156-186 20-50 (325)
331 cd01130 VirB11-like_ATPase Typ 95.0 0.056 1.2E-06 50.6 6.2 25 161-185 26-50 (186)
332 PRK07952 DNA replication prote 94.9 0.11 2.4E-06 51.7 8.5 24 161-184 100-123 (244)
333 PRK14970 DNA polymerase III su 94.9 0.033 7.2E-07 57.3 4.9 31 156-186 35-65 (367)
334 TIGR02928 orc1/cdc6 family rep 94.9 0.039 8.4E-07 56.1 5.4 28 157-184 37-64 (365)
335 CHL00095 clpC Clp protease ATP 94.9 0.089 1.9E-06 60.5 8.7 29 156-184 534-563 (821)
336 KOG0739 AAA+-type ATPase [Post 94.9 0.037 8.1E-07 57.6 5.1 51 149-199 154-207 (439)
337 KOG0742 AAA+-type ATPase [Post 94.9 0.031 6.6E-07 60.2 4.6 30 161-190 385-414 (630)
338 cd01878 HflX HflX subfamily. 94.9 0.063 1.4E-06 49.9 6.2 23 161-183 42-64 (204)
339 PRK13695 putative NTPase; Prov 94.8 0.025 5.3E-07 52.1 3.4 24 161-184 1-24 (174)
340 KOG0733 Nuclear AAA ATPase (VC 94.8 0.022 4.8E-07 63.5 3.6 33 158-190 543-575 (802)
341 PF03205 MobB: Molybdopterin g 94.8 0.024 5.3E-07 51.5 3.3 23 162-184 2-24 (140)
342 PF00005 ABC_tran: ABC transpo 94.8 0.021 4.6E-07 49.6 2.7 24 161-184 12-35 (137)
343 cd00820 PEPCK_HprK Phosphoenol 94.8 0.032 7E-07 49.3 3.8 21 161-181 16-36 (107)
344 PRK09112 DNA polymerase III su 94.8 0.049 1.1E-06 56.9 5.7 36 151-186 36-71 (351)
345 PRK13768 GTPase; Provisional 94.8 0.027 5.9E-07 55.7 3.7 26 159-184 1-26 (253)
346 PRK00411 cdc6 cell division co 94.7 0.05 1.1E-06 55.9 5.7 28 157-184 52-79 (394)
347 COG0125 Tmk Thymidylate kinase 94.7 0.24 5.1E-06 48.4 10.0 86 159-259 2-98 (208)
348 PRK05416 glmZ(sRNA)-inactivati 94.7 0.035 7.6E-07 56.5 4.4 28 161-189 7-34 (288)
349 PRK07003 DNA polymerase III su 94.7 0.052 1.1E-06 62.2 6.1 32 156-187 34-65 (830)
350 TIGR00101 ureG urease accessor 94.7 0.033 7.1E-07 53.3 3.9 26 160-185 1-26 (199)
351 COG0714 MoxR-like ATPases [Gen 94.7 0.03 6.6E-07 57.0 3.9 28 162-189 45-72 (329)
352 PRK14950 DNA polymerase III su 94.7 0.053 1.2E-06 60.0 6.1 32 156-187 34-65 (585)
353 PRK07133 DNA polymerase III su 94.6 0.052 1.1E-06 61.8 5.9 32 156-187 36-67 (725)
354 PRK05973 replicative DNA helic 94.6 0.16 3.5E-06 50.5 8.8 28 161-188 65-95 (237)
355 PRK06647 DNA polymerase III su 94.6 0.056 1.2E-06 59.8 6.1 33 155-187 33-65 (563)
356 PF00931 NB-ARC: NB-ARC domain 94.6 0.042 9E-07 53.5 4.5 26 158-183 17-42 (287)
357 PRK08181 transposase; Validate 94.6 0.049 1.1E-06 55.0 5.1 24 161-184 107-130 (269)
358 COG1855 ATPase (PilT family) [ 94.6 0.038 8.2E-07 60.0 4.4 23 162-184 265-287 (604)
359 TIGR03345 VI_ClpV1 type VI sec 94.6 0.1 2.2E-06 60.4 8.3 28 157-184 592-620 (852)
360 cd04163 Era Era subfamily. Er 94.6 0.034 7.3E-07 47.9 3.4 23 160-182 3-25 (168)
361 PRK10865 protein disaggregatio 94.5 0.11 2.3E-06 60.2 8.3 28 157-184 594-622 (857)
362 PRK00440 rfc replication facto 94.5 0.051 1.1E-06 53.7 5.0 24 162-185 40-63 (319)
363 PRK05563 DNA polymerase III su 94.5 0.064 1.4E-06 59.2 6.2 31 156-186 34-64 (559)
364 PF02367 UPF0079: Uncharacteri 94.5 0.044 9.4E-07 49.5 4.1 29 159-187 14-42 (123)
365 PRK06893 DNA replication initi 94.5 0.032 6.9E-07 54.2 3.4 23 162-184 41-63 (229)
366 PF03308 ArgK: ArgK protein; 94.5 0.048 1E-06 55.3 4.7 36 149-184 17-53 (266)
367 TIGR00073 hypB hydrogenase acc 94.5 0.044 9.5E-07 52.1 4.2 28 158-185 20-47 (207)
368 KOG0741 AAA+-type ATPase [Post 94.5 0.072 1.5E-06 58.9 6.2 29 161-189 539-567 (744)
369 PF06068 TIP49: TIP49 C-termin 94.5 0.053 1.1E-06 57.6 5.1 31 160-190 50-82 (398)
370 cd01394 radB RadB. The archaea 94.5 0.04 8.6E-07 52.2 3.9 26 159-184 18-43 (218)
371 PRK14965 DNA polymerase III su 94.4 0.07 1.5E-06 59.1 6.2 31 156-186 34-64 (576)
372 COG1162 Predicted GTPases [Gen 94.4 0.083 1.8E-06 54.5 6.3 26 160-185 164-189 (301)
373 PRK14953 DNA polymerase III su 94.4 0.052 1.1E-06 59.0 5.1 32 156-187 34-65 (486)
374 PF13476 AAA_23: AAA domain; P 94.4 0.033 7.1E-07 50.6 3.0 28 159-186 18-45 (202)
375 TIGR00750 lao LAO/AO transport 94.4 0.056 1.2E-06 54.7 4.9 36 149-184 22-58 (300)
376 PHA02624 large T antigen; Prov 94.4 0.21 4.5E-06 56.2 9.6 29 160-188 431-459 (647)
377 COG1484 DnaC DNA replication p 94.3 0.13 2.8E-06 51.3 7.4 40 159-198 104-148 (254)
378 PRK07764 DNA polymerase III su 94.3 0.064 1.4E-06 61.9 5.9 32 156-187 33-64 (824)
379 PRK07940 DNA polymerase III su 94.3 0.079 1.7E-06 56.2 6.2 29 159-187 35-63 (394)
380 PRK04296 thymidine kinase; Pro 94.3 0.038 8.3E-07 52.2 3.4 24 161-184 3-26 (190)
381 PF01695 IstB_IS21: IstB-like 94.3 0.064 1.4E-06 50.5 4.9 26 159-184 46-71 (178)
382 PRK07471 DNA polymerase III su 94.3 0.072 1.6E-06 55.9 5.7 34 153-186 34-67 (365)
383 cd03255 ABC_MJ0796_Lo1CDE_FtsE 94.3 0.037 8E-07 52.3 3.3 24 161-184 31-54 (218)
384 TIGR00176 mobB molybdopterin-g 94.3 0.034 7.3E-07 51.4 2.9 23 162-184 1-23 (155)
385 PF03477 ATP-cone: ATP cone do 94.2 0.23 4.9E-06 41.2 7.5 75 80-155 9-88 (90)
386 KOG2028 ATPase related to the 94.2 0.12 2.7E-06 55.1 7.2 119 152-281 154-282 (554)
387 cd03269 ABC_putative_ATPase Th 94.2 0.04 8.6E-07 51.9 3.3 25 160-184 26-50 (210)
388 cd03292 ABC_FtsE_transporter F 94.2 0.04 8.7E-07 51.8 3.3 25 160-184 27-51 (214)
389 TIGR00231 small_GTP small GTP- 94.2 0.05 1.1E-06 45.9 3.5 24 161-184 2-25 (161)
390 TIGR02237 recomb_radB DNA repa 94.1 0.052 1.1E-06 51.0 3.9 25 160-184 12-36 (209)
391 TIGR02673 FtsE cell division A 94.1 0.043 9.3E-07 51.8 3.3 24 161-184 29-52 (214)
392 TIGR02315 ABC_phnC phosphonate 94.1 0.043 9.3E-07 52.8 3.3 24 161-184 29-52 (243)
393 TIGR01166 cbiO cobalt transpor 94.1 0.044 9.5E-07 50.9 3.2 24 161-184 19-42 (190)
394 cd03256 ABC_PhnC_transporter A 94.1 0.043 9.4E-07 52.6 3.3 24 161-184 28-51 (241)
395 cd03225 ABC_cobalt_CbiO_domain 94.1 0.044 9.6E-07 51.5 3.3 24 161-184 28-51 (211)
396 TIGR00960 3a0501s02 Type II (G 94.1 0.043 9.4E-07 51.9 3.2 24 161-184 30-53 (216)
397 cd04154 Arl2 Arl2 subfamily. 94.1 0.06 1.3E-06 48.7 4.0 26 158-183 12-37 (173)
398 cd03116 MobB Molybdenum is an 94.0 0.053 1.1E-06 50.5 3.7 24 161-184 2-25 (159)
399 cd03224 ABC_TM1139_LivF_branch 94.0 0.044 9.4E-07 51.9 3.2 24 161-184 27-50 (222)
400 KOG0989 Replication factor C, 94.0 0.062 1.3E-06 55.9 4.4 27 161-187 58-84 (346)
401 cd03261 ABC_Org_Solvent_Resist 94.0 0.046 1E-06 52.5 3.3 24 161-184 27-50 (235)
402 KOG0745 Putative ATP-dependent 94.0 0.054 1.2E-06 58.6 4.0 29 162-190 228-256 (564)
403 cd03264 ABC_drug_resistance_li 94.0 0.043 9.3E-07 51.8 3.0 23 162-184 27-49 (211)
404 cd03226 ABC_cobalt_CbiO_domain 94.0 0.047 1E-06 51.3 3.2 24 161-184 27-50 (205)
405 cd03259 ABC_Carb_Solutes_like 93.9 0.049 1.1E-06 51.4 3.3 24 161-184 27-50 (213)
406 PRK05564 DNA polymerase III su 93.9 0.099 2.1E-06 52.9 5.7 34 153-186 19-52 (313)
407 cd03263 ABC_subfamily_A The AB 93.9 0.049 1.1E-06 51.6 3.3 24 161-184 29-52 (220)
408 cd03262 ABC_HisP_GlnQ_permease 93.9 0.05 1.1E-06 51.1 3.3 24 161-184 27-50 (213)
409 cd03258 ABC_MetN_methionine_tr 93.9 0.05 1.1E-06 52.1 3.3 24 161-184 32-55 (233)
410 PRK06851 hypothetical protein; 93.9 0.073 1.6E-06 56.2 4.7 27 158-184 212-238 (367)
411 cd03293 ABC_NrtD_SsuB_transpor 93.9 0.05 1.1E-06 51.7 3.3 24 161-184 31-54 (220)
412 TIGR03608 L_ocin_972_ABC putat 93.9 0.052 1.1E-06 50.8 3.3 24 161-184 25-48 (206)
413 cd03260 ABC_PstB_phosphate_tra 93.9 0.051 1.1E-06 51.8 3.3 24 161-184 27-50 (227)
414 cd01129 PulE-GspE PulE/GspE Th 93.9 0.12 2.7E-06 51.6 6.1 24 162-185 82-105 (264)
415 PRK12608 transcription termina 93.8 0.19 4.1E-06 53.5 7.7 23 162-184 135-157 (380)
416 PF07475 Hpr_kinase_C: HPr Ser 93.8 0.043 9.2E-07 52.4 2.7 34 161-196 19-52 (171)
417 PRK11331 5-methylcytosine-spec 93.8 0.047 1E-06 59.1 3.4 26 161-186 195-220 (459)
418 PRK06305 DNA polymerase III su 93.8 0.082 1.8E-06 56.9 5.1 32 156-187 35-66 (451)
419 cd03219 ABC_Mj1267_LivG_branch 93.8 0.048 1.1E-06 52.2 3.0 24 161-184 27-50 (236)
420 PF01926 MMR_HSR1: 50S ribosom 93.8 0.053 1.1E-06 46.1 3.0 20 163-182 2-21 (116)
421 cd03265 ABC_DrrA DrrA is the A 93.8 0.054 1.2E-06 51.5 3.3 25 160-184 26-50 (220)
422 cd01895 EngA2 EngA2 subfamily. 93.8 0.059 1.3E-06 47.0 3.3 24 160-183 2-25 (174)
423 cd03235 ABC_Metallic_Cations A 93.7 0.05 1.1E-06 51.4 3.0 25 160-184 25-49 (213)
424 COG0378 HypB Ni2+-binding GTPa 93.7 0.066 1.4E-06 52.3 3.8 40 157-196 9-52 (202)
425 cd03301 ABC_MalK_N The N-termi 93.7 0.056 1.2E-06 50.9 3.3 24 161-184 27-50 (213)
426 TIGR02211 LolD_lipo_ex lipopro 93.7 0.055 1.2E-06 51.3 3.3 25 160-184 31-55 (221)
427 PF03193 DUF258: Protein of un 93.7 0.057 1.2E-06 50.9 3.3 25 161-185 36-60 (161)
428 PF01443 Viral_helicase1: Vira 93.7 0.045 9.8E-07 51.7 2.7 22 163-184 1-22 (234)
429 PF00437 T2SE: Type II/IV secr 93.7 0.058 1.3E-06 53.0 3.5 25 161-185 128-152 (270)
430 cd00879 Sar1 Sar1 subfamily. 93.7 0.095 2.1E-06 47.9 4.7 24 159-182 18-41 (190)
431 PF01078 Mg_chelatase: Magnesi 93.7 0.055 1.2E-06 53.0 3.3 25 161-185 23-47 (206)
432 PF10662 PduV-EutP: Ethanolami 93.7 0.051 1.1E-06 50.4 2.9 21 162-182 3-23 (143)
433 TIGR03410 urea_trans_UrtE urea 93.7 0.054 1.2E-06 51.7 3.2 25 160-184 26-50 (230)
434 COG1126 GlnQ ABC-type polar am 93.7 0.053 1.2E-06 54.0 3.1 23 161-184 29-51 (240)
435 PRK08451 DNA polymerase III su 93.7 0.11 2.3E-06 57.4 5.8 32 155-186 31-62 (535)
436 PRK13541 cytochrome c biogenes 93.7 0.058 1.3E-06 50.5 3.3 25 160-184 26-50 (195)
437 cd04119 RJL RJL (RabJ-Like) su 93.7 0.061 1.3E-06 47.1 3.2 23 162-184 2-24 (168)
438 KOG0734 AAA+-type ATPase conta 93.7 0.06 1.3E-06 59.6 3.7 35 158-192 335-369 (752)
439 PRK14948 DNA polymerase III su 93.7 0.077 1.7E-06 59.4 4.7 30 158-187 36-65 (620)
440 PRK10584 putative ABC transpor 93.7 0.058 1.3E-06 51.5 3.3 25 160-184 36-60 (228)
441 PRK11629 lolD lipoprotein tran 93.7 0.058 1.2E-06 51.8 3.3 25 160-184 35-59 (233)
442 cd04159 Arl10_like Arl10-like 93.6 0.054 1.2E-06 46.5 2.8 21 163-183 2-22 (159)
443 cd03283 ABC_MutS-like MutS-lik 93.6 0.058 1.3E-06 51.6 3.3 22 161-182 26-47 (199)
444 cd03296 ABC_CysA_sulfate_impor 93.6 0.058 1.3E-06 52.0 3.3 25 160-184 28-52 (239)
445 cd04138 H_N_K_Ras_like H-Ras/N 93.6 0.061 1.3E-06 46.8 3.1 22 162-183 3-24 (162)
446 PRK14959 DNA polymerase III su 93.6 0.084 1.8E-06 59.2 4.9 31 157-187 35-65 (624)
447 cd03266 ABC_NatA_sodium_export 93.6 0.059 1.3E-06 50.9 3.3 24 161-184 32-55 (218)
448 PRK13764 ATPase; Provisional 93.6 0.095 2.1E-06 58.6 5.3 25 161-185 258-282 (602)
449 cd03230 ABC_DR_subfamily_A Thi 93.6 0.062 1.3E-06 49.5 3.3 24 161-184 27-50 (173)
450 cd03257 ABC_NikE_OppD_transpor 93.6 0.059 1.3E-06 51.1 3.2 24 161-184 32-55 (228)
451 TIGR01978 sufC FeS assembly AT 93.6 0.059 1.3E-06 51.7 3.2 23 161-183 27-49 (243)
452 TIGR03878 thermo_KaiC_2 KaiC d 93.6 0.068 1.5E-06 53.0 3.8 25 159-183 35-59 (259)
453 PRK11124 artP arginine transpo 93.6 0.06 1.3E-06 51.9 3.3 24 161-184 29-52 (242)
454 cd03268 ABC_BcrA_bacitracin_re 93.6 0.062 1.3E-06 50.6 3.3 25 160-184 26-50 (208)
455 cd03229 ABC_Class3 This class 93.6 0.064 1.4E-06 49.6 3.3 24 161-184 27-50 (178)
456 TIGR03864 PQQ_ABC_ATP ABC tran 93.6 0.061 1.3E-06 51.8 3.3 25 160-184 27-51 (236)
457 KOG0727 26S proteasome regulat 93.5 0.15 3.2E-06 52.3 6.1 43 157-199 186-230 (408)
458 PRK10463 hydrogenase nickel in 93.5 0.084 1.8E-06 54.1 4.3 27 158-184 102-128 (290)
459 COG1116 TauB ABC-type nitrate/ 93.5 0.061 1.3E-06 54.1 3.3 24 161-184 30-53 (248)
460 PF13555 AAA_29: P-loop contai 93.5 0.085 1.8E-06 42.5 3.5 23 162-184 25-47 (62)
461 PRK11264 putative amino-acid A 93.5 0.064 1.4E-06 51.9 3.3 25 160-184 29-53 (250)
462 cd03218 ABC_YhbG The ABC trans 93.5 0.064 1.4E-06 51.2 3.3 24 161-184 27-50 (232)
463 PRK10733 hflB ATP-dependent me 93.5 0.078 1.7E-06 59.4 4.4 32 159-190 184-215 (644)
464 cd03297 ABC_ModC_molybdenum_tr 93.5 0.064 1.4E-06 50.8 3.2 24 161-184 24-47 (214)
465 TIGR02782 TrbB_P P-type conjug 93.5 0.23 4.9E-06 50.7 7.4 24 161-184 133-156 (299)
466 cd00876 Ras Ras family. The R 93.5 0.063 1.4E-06 46.6 2.9 21 163-183 2-22 (160)
467 KOG0651 26S proteasome regulat 93.4 0.093 2E-06 54.8 4.5 33 158-190 164-196 (388)
468 cd03273 ABC_SMC2_euk Eukaryoti 93.4 0.073 1.6E-06 52.0 3.7 27 160-186 25-51 (251)
469 PRK09361 radB DNA repair and r 93.4 0.082 1.8E-06 50.4 3.9 25 160-184 23-47 (225)
470 cd00154 Rab Rab family. Rab G 93.4 0.068 1.5E-06 45.7 3.1 21 162-182 2-22 (159)
471 PRK14247 phosphate ABC transpo 93.4 0.066 1.4E-06 51.9 3.3 25 160-184 29-53 (250)
472 cd04160 Arfrp1 Arfrp1 subfamil 93.4 0.07 1.5E-06 47.3 3.2 22 163-184 2-23 (167)
473 PRK10247 putative ABC transpor 93.4 0.068 1.5E-06 51.3 3.3 25 160-184 33-57 (225)
474 CHL00206 ycf2 Ycf2; Provisiona 93.4 0.074 1.6E-06 65.8 4.3 33 158-190 1628-1660(2281)
475 COG4185 Uncharacterized protei 93.4 0.15 3.3E-06 48.9 5.5 142 159-423 1-146 (187)
476 PRK14242 phosphate transporter 93.4 0.068 1.5E-06 51.9 3.3 25 160-184 32-56 (253)
477 TIGR01420 pilT_fam pilus retra 93.4 0.07 1.5E-06 55.1 3.6 25 161-185 123-147 (343)
478 cd03232 ABC_PDR_domain2 The pl 93.4 0.069 1.5E-06 50.1 3.2 23 161-183 34-56 (192)
479 PRK13531 regulatory ATPase Rav 93.4 0.18 3.9E-06 55.3 6.8 24 162-185 41-64 (498)
480 TIGR02524 dot_icm_DotB Dot/Icm 93.4 0.068 1.5E-06 56.0 3.5 24 161-184 135-158 (358)
481 PRK11248 tauB taurine transpor 93.3 0.068 1.5E-06 52.6 3.3 24 161-184 28-51 (255)
482 PRK10646 ADP-binding protein; 93.3 0.093 2E-06 49.1 4.0 28 160-187 28-55 (153)
483 cd03251 ABCC_MsbA MsbA is an e 93.3 0.07 1.5E-06 51.0 3.3 25 160-184 28-52 (234)
484 smart00175 RAB Rab subfamily o 93.3 0.071 1.5E-06 46.7 3.1 22 162-183 2-23 (164)
485 PRK10908 cell division protein 93.3 0.072 1.6E-06 50.7 3.3 25 160-184 28-52 (222)
486 PRK14250 phosphate ABC transpo 93.3 0.071 1.5E-06 51.7 3.3 25 160-184 29-53 (241)
487 KOG3877 NADH:ubiquinone oxidor 93.3 0.17 3.7E-06 52.3 6.0 30 160-189 71-100 (393)
488 smart00173 RAS Ras subfamily o 93.3 0.075 1.6E-06 46.9 3.2 21 162-182 2-22 (164)
489 TIGR01184 ntrCD nitrate transp 93.3 0.073 1.6E-06 51.3 3.3 24 161-184 12-35 (230)
490 PRK13974 thymidylate kinase; P 93.3 0.083 1.8E-06 50.6 3.7 25 161-185 4-28 (212)
491 PF00025 Arf: ADP-ribosylation 93.3 0.095 2.1E-06 48.4 3.9 32 151-182 5-36 (175)
492 cd03247 ABCC_cytochrome_bd The 93.2 0.077 1.7E-06 49.0 3.3 25 160-184 28-52 (178)
493 COG3839 MalK ABC-type sugar tr 93.2 0.069 1.5E-06 55.8 3.3 23 162-184 31-53 (338)
494 PRK09493 glnQ glutamine ABC tr 93.2 0.074 1.6E-06 51.2 3.3 25 160-184 27-51 (240)
495 cd01862 Rab7 Rab7 subfamily. 93.2 0.074 1.6E-06 47.1 3.0 22 162-183 2-23 (172)
496 cd04137 RheB Rheb (Ras Homolog 93.2 0.083 1.8E-06 47.7 3.4 23 161-183 2-24 (180)
497 cd00157 Rho Rho (Ras homology) 93.2 0.081 1.7E-06 46.8 3.2 22 162-183 2-23 (171)
498 PRK10895 lipopolysaccharide AB 93.2 0.076 1.6E-06 51.2 3.3 25 160-184 29-53 (241)
499 PRK10744 pstB phosphate transp 93.2 0.075 1.6E-06 52.1 3.3 24 161-184 40-63 (260)
500 cd03234 ABCG_White The White s 93.2 0.076 1.6E-06 50.8 3.2 26 160-185 33-58 (226)
No 1
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.6e-43 Score=352.74 Aligned_cols=282 Identities=24% Similarity=0.382 Sum_probs=241.4
Q ss_pred eEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHH
Q 011994 68 VKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISR 147 (473)
Q Consensus 68 vkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~r 147 (473)
++|.|.-+ +..+|||||||+|+|+.+|+++++||+||.++++.|++.++..+++++|++.|++.|.+.+|.. .+.+
T Consensus 4 ~~i~v~~~---~~~~pfSrgiL~rsL~~~g~~~~~A~~iA~~i~~~L~~~g~~~i~~~el~~~V~~~L~~~~~~~-~~~~ 79 (301)
T PRK04220 4 IRIIVKGK---KYEMPFSKGILARSLTAAGMKPSIAYEIASEIEEELKKEGIKEITKEELRRRVYYKLIEKDYEE-VAEK 79 (301)
T ss_pred eEEEEcCC---CccCCCcHHHHHHHHHHcCCChhHHHHHHHHHHHHHHHcCCEEeeHHHHHHHHHHHHHHhCcHh-HHHH
Confidence 45666665 5679999999999999999999999999999999999999999999999999999999976654 6888
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCccccc--cccC
Q 011994 148 YRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR--NFSS 219 (473)
Q Consensus 148 Y~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~--~y~s 219 (473)
|++|++++..++|++|+|+|++||||||+|..||.+||+++|+++|++|+.||...+.++ +.+.+|.. ..++
T Consensus 80 y~~~~~i~~~~~p~iIlI~G~sgsGKStlA~~La~~l~~~~vi~~D~~re~~R~~~~~e~~p~L~~S~Y~a~~~l~~~~~ 159 (301)
T PRK04220 80 YLLWRRIRKSKEPIIILIGGASGVGTSTIAFELASRLGIRSVIGTDSIREVMRKIISKELLPTLHESSYTAWKSLRRPPP 159 (301)
T ss_pred HHHHHHHhcCCCCEEEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHHHHHhcchhhccchhhhhhhhhhcccCCCC
Confidence 999999999999999999999999999999999999999999999999999998664332 23455652 1233
Q ss_pred hHH-HHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccC
Q 011994 220 SEE-LVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESN 298 (473)
Q Consensus 220 ~Ee-lI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~ 298 (473)
.++ .+.+|..||+.|..|+.++|++++.+|.++||||+|+.|++... +
T Consensus 160 ~~~~~l~g~~~~~~~v~~gi~~~I~~~~~~g~s~IiEGvhl~P~~i~~--~----------------------------- 208 (301)
T PRK04220 160 PEPPVIYGFERHVEPVSVGVEAVIERALKEGISVIIEGVHIVPGFIKE--K----------------------------- 208 (301)
T ss_pred CchhhhhhHHHHHHHHHHHHHHHHHHHHHhCCcEEEecCCCCHHHHHH--h-----------------------------
Confidence 444 89999999999999999999999999999999999999998522 0
Q ss_pred cccccccccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEE
Q 011994 299 SASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIV 378 (473)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~v 378 (473)
....|.+|||+
T Consensus 209 ---------------------------------------------------------------------~~~~~~~i~~~ 219 (301)
T PRK04220 209 ---------------------------------------------------------------------YLENPNVFMFV 219 (301)
T ss_pred ---------------------------------------------------------------------hhcCCCEEEEE
Confidence 11245689999
Q ss_pred EEecch-hhHHHHHHhhhhhcccccccccch-HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHHH
Q 011994 379 LKMADF-DHKALLEEWILTHTFGDKCLVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIE 456 (473)
Q Consensus 379 l~~~~~-dh~~lle~~~~~ra~~~~~~~~~~-~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~ 456 (473)
|+++++ .|+ +.|..|+.+++ .+.++ .+.|.++++||||||..+. .+.++-|+++++++|+|.+|.++.+|++
T Consensus 220 l~i~~ee~h~----~RF~~R~~~~~-r~~~~y~~~~~~ir~iq~~l~~~a~-~~~ip~I~n~~i~~s~~~~~~~i~~~~~ 293 (301)
T PRK04220 220 LTLSDEEAHK----ARFYARARVSR-RPAERYLKNFEIIREINDYIVEKAK-KHGVPVIENISIEETVDKILEIITERLS 293 (301)
T ss_pred EEECCHHHHH----HHHHHHHhhhC-CchhhHHHHHHHHHHHHHHHHHHHH-HhCCCeecCccHHHHHHHHHHHHHHHHH
Confidence 998886 666 66788999883 33333 3899999999999999875 6778889999999999999999999997
Q ss_pred Hhh
Q 011994 457 KGI 459 (473)
Q Consensus 457 ~~~ 459 (473)
...
T Consensus 294 ~~~ 296 (301)
T PRK04220 294 KII 296 (301)
T ss_pred HHH
Confidence 654
No 2
>COG2074 2-phosphoglycerate kinase [Carbohydrate transport and metabolism]
Probab=100.00 E-value=1.2e-41 Score=333.32 Aligned_cols=274 Identities=27% Similarity=0.410 Sum_probs=232.7
Q ss_pred Ccc-ccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhcc
Q 011994 79 DHY-YVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQ 157 (473)
Q Consensus 79 ~h~-ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~ 157 (473)
++| .|||||||.|+|+++|++|+.||+||.+++.+|.+.+...|+.++|++ ++..|.+.++.+ .+++|.||++|+..
T Consensus 9 ~~~~~PFSkGiL~rSlta~g~~p~~Ay~iA~~i~e~L~~~~~~~v~~~eir~-~~~~l~~k~~~e-~a~rY~lwR~ir~~ 86 (299)
T COG2074 9 DKYEMPFSKGILARSLTAAGVDPDLAYSIAIEIQEELKKEGIRLVTKDEIRE-VYQKLLEKGDPE-VAKRYLLWRRIRKM 86 (299)
T ss_pred CcccCCcchhHHHHHHHhcccChhHHHHHHHHHHHHHHhCCCeEeeHHHHHH-HHHHHHHhcCHH-HHHHHHHHHHHhcc
Confidence 566 999999999999999999999999999999999999999999999999 666555545555 69999999999999
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCcccccc-ccChH-HHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWARN-FSSSE-ELVTEFVR 229 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~~-y~s~E-elI~gf~~ 229 (473)
+.|.+|||+|+||+||||+|..||.+||++.+++||.+|+.||...+.++ +.+.+|..- .+..+ ..+.||.+
T Consensus 87 ~~p~IILIGGasGVGkStIA~ElA~rLgI~~visTD~IREvlR~ii~~~l~PtLh~Ssy~Awkalr~~~~~~piiaGF~d 166 (299)
T COG2074 87 KRPLIILIGGASGVGKSTIAGELARRLGIRSVISTDSIREVLRKIISPELLPTLHTSSYDAWKALRDPTDENPIIAGFED 166 (299)
T ss_pred CCCeEEEecCCCCCChhHHHHHHHHHcCCceeecchHHHHHHHHhCCHHhcchhhHhHHHHHHHhcCCCCCcchhhhHHH
Confidence 99999999999999999999999999999999999999999999776433 236778642 12223 38999999
Q ss_pred cchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCC
Q 011994 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWEN 309 (473)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 309 (473)
|++.|..|+.+++++++.+|.++||||+|+.|++.-...+
T Consensus 167 qa~~V~~GI~~VI~RAi~eG~~lIIEGvHlVPg~i~~~~~---------------------------------------- 206 (299)
T COG2074 167 QASAVMVGIEAVIERAIEEGEDLIIEGVHLVPGLIKEEAL---------------------------------------- 206 (299)
T ss_pred HhHHHHHHHHHHHHHHHhcCcceEEEeeeeccccccHhhh----------------------------------------
Confidence 9999999999999999999999999999999999622100
Q ss_pred CCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-hhHH
Q 011994 310 GNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF-DHKA 388 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~-dh~~ 388 (473)
+.-.++|||++.|+ +|+
T Consensus 207 -------------------------------------------------------------~~n~~~~~l~i~dee~Hr- 224 (299)
T COG2074 207 -------------------------------------------------------------GNNVFMFMLYIADEELHR- 224 (299)
T ss_pred -------------------------------------------------------------ccceEEEEEEeCCHHHHH-
Confidence 12468999999997 888
Q ss_pred HHHHhhhhhcccc--cccccchHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHHHHhhh
Q 011994 389 LLEEWILTHTFGD--KCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCIEKGIS 460 (473)
Q Consensus 389 lle~~~~~ra~~~--~~~~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i~~~~~ 460 (473)
+.|--|+... +-+....-++|.-+|+|||||...+. ++.|+-|++-.+++|.|.+=..+.+...++.+
T Consensus 225 ---~RF~~R~~~t~~~rp~~Ryl~yf~EiR~I~Dyl~~~Ar-e~gVPvI~n~di~etv~~il~~i~~~~~r~~~ 294 (299)
T COG2074 225 ---ERFYDRIRYTHASRPGGRYLEYFKEIRTIHDYLVERAR-EHGVPVIENDDIDETVDRILEDIRKRTVRGLS 294 (299)
T ss_pred ---HHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHH-hcCCCeeccccHHHHHHHHHHHHHHHHHHHhh
Confidence 3334465544 43444457999999999999999886 89999999999999999999888888777643
No 3
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=100.00 E-value=3.6e-41 Score=353.91 Aligned_cols=288 Identities=21% Similarity=0.307 Sum_probs=246.4
Q ss_pred ceEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHH
Q 011994 67 FVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYIS 146 (473)
Q Consensus 67 fvkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~ 146 (473)
|++|-|.-+.. ..-.|||||+|.|+|+.+||++++|++|+.++++.|++.+...+.++++++.|.+.+.+. ++...+.
T Consensus 164 ~~~~~v~~~~~-~~~~PFSkGiLaRsLi~aDV~~~~A~~Ia~~Lk~~L~~kg~~~~~ra~VR~~V~~~L~~~-l~~~~a~ 241 (475)
T PRK12337 164 AGELFVEEAEG-APRVPFSKGILAQSLMAAGLAPDVARRLARETERDLRRSGDRVVRRDQLRRKVEALLLEE-AGEEVAR 241 (475)
T ss_pred chheeeeeCCC-CCCCCCchhHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHhh-hhhhHHH
Confidence 89999999842 233999999999999999999999999999999999988888889999999999998873 4555577
Q ss_pred HHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCcccccc----
Q 011994 147 RYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWARN---- 216 (473)
Q Consensus 147 rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~~---- 216 (473)
+|.++..+...++|.+|+|+|+||+||||+|..||.++|+.+++.+|.+|+.|++..+.++ +.+.+|...
T Consensus 242 ~y~la~~i~~~k~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ii~tD~iR~~lr~~i~~e~~P~Lh~Sty~A~~~~~~~~ 321 (475)
T PRK12337 242 RYRLLRSIRRPPRPLHVLIGGVSGVGKSVLASALAYRLGITRIVSTDAVREVLRAMVSKDLLPTLHASTFNAWRALLPPG 321 (475)
T ss_pred HHHHHHHhhccCCCeEEEEECCCCCCHHHHHHHHHHHcCCcEEeehhHHHHHHHhhcchhhccchhhchhhHHhhccCcc
Confidence 8888988888778999999999999999999999999999988999999999998766433 234556532
Q ss_pred -----ccChHHHHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCC
Q 011994 217 -----FSSSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNP 291 (473)
Q Consensus 217 -----y~s~EelI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~ 291 (473)
....+.++.||.+||..|..++..++++++.+|.+|||||+|+.|+++..
T Consensus 322 ~~~~~~~~~~~vi~Gf~~q~~~V~~gi~~vI~r~l~eG~SvIIEGVHl~P~~i~~------------------------- 376 (475)
T PRK12337 322 EGLPAEPTRAEVLRGFRDQVQQVAVGLGAIQERSAQEGTSLVLEGVHLVPGYLRH------------------------- 376 (475)
T ss_pred cccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeEEEECCCCCHHHHHH-------------------------
Confidence 12356789999999999999999999999999999999999999998521
Q ss_pred ccccccCcccccccccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCC
Q 011994 292 VTQVESNSASVCVSDWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPD 371 (473)
Q Consensus 292 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~ 371 (473)
+...+
T Consensus 377 ---------------------------------------------------------------------------~~~~~ 381 (475)
T PRK12337 377 ---------------------------------------------------------------------------PYQAG 381 (475)
T ss_pred ---------------------------------------------------------------------------HHhcC
Confidence 01246
Q ss_pred cEEEEEEEEecchhhHHHHHHhhhhhcccccc-cccch-HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHH
Q 011994 372 PIIIPIVLKMADFDHKALLEEWILTHTFGDKC-LVQNK-DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHG 449 (473)
Q Consensus 372 ~iivp~vl~~~~~dh~~lle~~~~~ra~~~~~-~~~~~-~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~ 449 (473)
+++|||+++++|+++| .++|.+|+.++.. .|.++ .++|+|||+||||||+.+. .+.++-|+|+++++|+|.+|.
T Consensus 382 ~~~i~flv~isdeeeH---~~Rf~~Ra~~~~~~r~~~ky~~~f~~IR~IQdyLv~~A~-~~~ipvI~n~nid~tv~~~l~ 457 (475)
T PRK12337 382 ALVVPMLVTLPDEALH---RRRFELRDRETGASRPRERYLRHFEEIRLIQDHLLRLAR-QEGVPVLPGEDLDESIDKALE 457 (475)
T ss_pred CceEEEEEEECCHHHH---HHHHHHHhhhccCCCchhHHHHhHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHHHH
Confidence 7999999999998544 2667899998753 33343 6999999999999999886 788899999999999999999
Q ss_pred HHHHHHHHhhh
Q 011994 450 YLLQCIEKGIS 460 (473)
Q Consensus 450 ~ll~~i~~~~~ 460 (473)
.+++.++.++.
T Consensus 458 ~i~~~~~~~~~ 468 (475)
T PRK12337 458 VVLRRVMAALT 468 (475)
T ss_pred HHHHHHHHhcC
Confidence 99999998875
No 4
>PRK12338 hypothetical protein; Provisional
Probab=99.93 E-value=1.7e-25 Score=226.81 Aligned_cols=192 Identities=25% Similarity=0.362 Sum_probs=152.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCC------CCCccccc-----cccC-hHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPL------SSSPVWAR-----NFSS-SEELVT 225 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL------~~~~~W~~-----~y~s-~EelI~ 225 (473)
++|.+|+|+|+|||||||+|..||.++|+.+++.+|.+|+.+++..+.++ +.+.+|.. .+.+ .+..+.
T Consensus 2 ~~p~ii~i~G~sGsGKST~a~~la~~l~~~~~~~tD~~r~~~~~~~~~~~~P~l~~ssy~a~~~l~~~~~~~~~~~~i~~ 81 (319)
T PRK12338 2 RKPYVILIGSASGIGKSTIASELARTLNIKHLIETDFIREVVRGIIGKEYAPALHKSSYNAYTALRDKENFKNNEELICA 81 (319)
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHCCCeEEccChHHHHHHcCCCCcccCchhhcccHHHHhhcCCcccccchHHHHHH
Confidence 46899999999999999999999999999998899999999998765433 22445542 1222 456679
Q ss_pred HHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCccccccc
Q 011994 226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVS 305 (473)
Q Consensus 226 gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~ 305 (473)
+|..||.+|..++.+++.+++.+|.+|||||+||.|++.....+
T Consensus 82 gf~~q~~~V~~~i~~vi~r~~~~g~svIiEGvhl~P~~i~~~~~------------------------------------ 125 (319)
T PRK12338 82 GFEEHASFVIPAIEKVIERAVTDSDDIVIEGVHLVPGLIDIEQF------------------------------------ 125 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEeccccHHHHhhhhh------------------------------------
Confidence 99999999999999999999999999999999999999643000
Q ss_pred ccCCCCCCCCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-
Q 011994 306 DWENGNNSPEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF- 384 (473)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~- 384 (473)
. .. -+|||++.++++
T Consensus 126 --------------------------------------------------------------~-~~-~~v~~~vl~~dee 141 (319)
T PRK12338 126 --------------------------------------------------------------E-EN-ASIHFFILSADEE 141 (319)
T ss_pred --------------------------------------------------------------c-cc-CceEEEEEECCHH
Confidence 0 01 246777777776
Q ss_pred hhHHHHHHhhhhhcccccccccchHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHHHHHHH
Q 011994 385 DHKALLEEWILTHTFGDKCLVQNKDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGYLLQCI 455 (473)
Q Consensus 385 dh~~lle~~~~~ra~~~~~~~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ll~~i 455 (473)
.|+ ++|..|+..+. .+.+..++|.++|+||||||+.+ ..+.|+.|++.++++|++.++.+|-+..
T Consensus 142 ~h~----~Rf~~R~~~~~-r~~~~l~~f~~Ir~Iq~~l~~~A-~e~~VpvI~N~did~Tv~~ile~I~e~s 206 (319)
T PRK12338 142 VHK----ERFVKRAMEIK-RGGKQLEYFRENRIIHDHLVEQA-REHNVPVIKNDDIDCTVKKMLSYIREVC 206 (319)
T ss_pred HHH----HHHHHhhhccC-CchhhhhChHHHHHHHHHHHHhH-hhCCCceeCCCcHHHHHHHHHHHHHhhe
Confidence 565 55688987664 22345699999999999999985 4888899999999999999999887654
No 5
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=99.90 E-value=8.4e-23 Score=194.16 Aligned_cols=182 Identities=19% Similarity=0.289 Sum_probs=145.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCC-CC---CCccccccc-cChHHHHHHHHhcchh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAP-LS---SSPVWARNF-SSSEELVTEFVRECRI 233 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~p-L~---~~~~W~~~y-~s~EelI~gf~~q~~~ 233 (473)
.|++|+|+|+||+||||+|..|+.++|+.+++.+|.+|+.|+...+.. .. .+.+|...- ...+..+.+|..|+..
T Consensus 2 ~~~~i~i~G~~G~GKst~a~~l~~~~~~~~~~~~D~~r~~~r~~~~~~p~l~~s~~~a~~~~~~~~~~~~~~~y~~q~~~ 81 (197)
T PRK12339 2 ESTIHFIGGIPGVGKTSISGYIARHRAIDIVLSGDYLREFLRPYVDDEPVLAKSVYDAWEFYGSMTDENIVKGYLDQARA 81 (197)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCeEEehhHHHHHHHHHhcCCCCCcccccHHHHHHcCCcchhHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999755422 21 233453211 2346788999999999
Q ss_pred hHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCCCCCC
Q 011994 234 VRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNS 313 (473)
Q Consensus 234 V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (473)
|..++...+..++.+|.++|+||+|+.|.+... .
T Consensus 82 v~~~L~~va~~~l~~G~sVIvEgv~l~p~~~~~--------------~-------------------------------- 115 (197)
T PRK12339 82 IMPGINRVIRRALLNGEDLVIESLYFHPPMIDE--------------N-------------------------------- 115 (197)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEecCcCHHHHHH--------------H--------------------------------
Confidence 999999999999999999999999999988411 0
Q ss_pred CCCCCCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecch-hhHHHHHH
Q 011994 314 PEQPSTGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADF-DHKALLEE 392 (473)
Q Consensus 314 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~-dh~~lle~ 392 (473)
. .+.++.|+|++++. .|+ +
T Consensus 116 ----------------------------------------------------~----~~~v~~i~l~v~d~e~lr----~ 135 (197)
T PRK12339 116 ----------------------------------------------------R----TNNIRAFYLYIRDAELHR----S 135 (197)
T ss_pred ----------------------------------------------------H----hcCeEEEEEEeCCHHHHH----H
Confidence 0 01246788998754 565 6
Q ss_pred hhhhhccccc-ccccc-hHHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHH
Q 011994 393 WILTHTFGDK-CLVQN-KDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWL 447 (473)
Q Consensus 393 ~~~~ra~~~~-~~~~~-~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~l 447 (473)
++..|..... ..|.+ ..++|.++|+||||||..+. .+.|+-|+++++++|++.+
T Consensus 136 Rl~~R~~~~~~~~p~~~~~~~~~~ir~i~~~l~~~a~-~~~i~~i~~~~~~~~~~~~ 191 (197)
T PRK12339 136 RLADRINYTHKNSPGKRLAEHLPEYRTIMDYSIADAR-GYNIKVIDTDNYREARNPL 191 (197)
T ss_pred HHHHHhhcccCCCcHHHHHHHHHHHHHHHHHHHHHHH-HcCCCeecCccHHHHHHHH
Confidence 7888987542 33444 36999999999999999885 9999999999999999865
No 6
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=98.92 E-value=3.3e-09 Score=113.19 Aligned_cols=83 Identities=28% Similarity=0.342 Sum_probs=77.0
Q ss_pred ccceEEEEEeccCCCccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhh
Q 011994 65 YDFVKVKVWLGDNADHYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEY 144 (473)
Q Consensus 65 YdfvkvkV~l~~~~~h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~ 144 (473)
--||+|.|... .+..|||||||+|+|+.+|++++.||.||.+|.+.|...++..|+.++|+..++..|.+. |+++.
T Consensus 78 ~~~~~i~V~~~---~~~~PFSkGiLarSL~~aG~~~~~Ay~iA~~Ve~~Lr~~~~~~Is~~eL~~~v~~~l~~~-~g~e~ 153 (475)
T PRK12337 78 PAFVDIVVREG---RGRRPFSRGVLARSLEDAGFSPREAYELASAVELRLRQEGVREIGAKELEKRTARELAER-YGEEA 153 (475)
T ss_pred CCcceEEEecC---CCCCCcchhhHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCcccCHHHHHHHHHHHHHHh-cCHHH
Confidence 34999999997 788999999999999999999999999999999999999999999999999999999984 77778
Q ss_pred HHHHHHH
Q 011994 145 ISRYRMM 151 (473)
Q Consensus 145 a~rY~l~ 151 (473)
+++|..-
T Consensus 154 a~ry~~~ 160 (475)
T PRK12337 154 RLRYRAR 160 (475)
T ss_pred HHHHHHh
Confidence 8988853
No 7
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=98.85 E-value=9.6e-09 Score=89.77 Aligned_cols=84 Identities=24% Similarity=0.383 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD 241 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~ 241 (473)
+|+++|+|||||||+|..|+..++..+ +..|.++..+.+..... +.. ..+.. ..+...+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~~~~~~-i~~D~~~~~~~~~~~~~------~~~----~~~~~-------~~~~~~~~~~ 62 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKRLGAVV-ISQDEIRRRLAGEDPPS------PSD----YIEAE-------ERAYQILNAA 62 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHSTEEE-EEHHHHHHHHCCSSSGC------CCC----CHHHH-------HHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHCCCEE-EeHHHHHHHHccccccc------chh----HHHHH-------HHHHHHHHHH
Confidence 689999999999999999999999665 58888888776522111 000 00111 1223345567
Q ss_pred HHHHHhCCCcEEEEcccCCccc
Q 011994 242 LKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 242 IekaL~eG~sVIIEGvhL~Pel 263 (473)
+...+..|.++|||++++.+..
T Consensus 63 ~~~~l~~g~~~vvd~~~~~~~~ 84 (143)
T PF13671_consen 63 IRKALRNGNSVVVDNTNLSREE 84 (143)
T ss_dssp HHHHHHTT-EEEEESS--SHHH
T ss_pred HHHHHHcCCCceeccCcCCHHH
Confidence 7788999999999999887744
No 8
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=98.84 E-value=5.1e-09 Score=97.53 Aligned_cols=100 Identities=26% Similarity=0.392 Sum_probs=71.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LA 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~ 239 (473)
..|||+|+||+||||++.+||..+|+++|..+|.+++.- + +..|...| .|..+.++ +.
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~isd~vkEn~-------l--~~gyDE~y------------~c~i~DEdkv~ 66 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEISDLVKENN-------L--YEGYDEEY------------KCHILDEDKVL 66 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehhhHHhhhc-------c--hhcccccc------------cCccccHHHHH
Confidence 368999999999999999999999999999999999851 1 12233222 24445444 56
Q ss_pred HHHHHHHhCCCcEE-EEcccCCccccc-ccccCCCCCccccccC
Q 011994 240 GDLKKAMKDGKPII-IEGIHLDPSIYL-MDDDSKAPATTTEKTN 281 (473)
Q Consensus 240 ~~IekaL~eG~sVI-IEGvhL~Pel~l-~~~~~r~~~~~~~k~~ 281 (473)
..++..|..|..|| ++|+.++|+... .=...|-+++++++-+
T Consensus 67 D~Le~~m~~Gg~IVDyHgCd~FperwfdlVvVLr~~~s~LY~RL 110 (176)
T KOG3347|consen 67 DELEPLMIEGGNIVDYHGCDFFPERWFDLVVVLRTPNSVLYDRL 110 (176)
T ss_pred HHHHHHHhcCCcEEeecccCccchhheeEEEEEecCchHHHHHH
Confidence 67888888899988 999999998642 1122344555555533
No 9
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.79 E-value=6.9e-08 Score=99.31 Aligned_cols=106 Identities=21% Similarity=0.246 Sum_probs=75.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHH-HhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKL-LVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~-Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
|...|..+||.+++|.+|..++++. ....++. +.+.+++.+.+.|.+. +.+. ....+...+....+|.+|||+|
T Consensus 72 LE~~Li~aDvg~e~~~~i~~~l~~~~~~~~~~~--~~~~v~~~l~~~l~~i-l~~~--~~~~~~~~~~~~~~p~Vil~vG 146 (340)
T COG0552 72 LEELLIEADVGVETAEEIIEELRKREGKKKKIK--DEETVKEALREALIEI-LRPV--DKVDLPLEIPKEKKPFVILFVG 146 (340)
T ss_pred HHHHHHHccccHHHHHHHHHHHHHHhcccccCC--CHHHHHHHHHHHHHHH-hccc--ccccchhhhccCCCcEEEEEEe
Confidence 6788999999999999999999996 4333332 2455555555554442 1110 0112233334466799999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHHH
Q 011994 168 TACVGKSTIATQLAQRL---NLPNVL-QTDMVYELL 199 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~L 199 (473)
.+|+||||...+||..| |.+.++ ++|++|...
T Consensus 147 VNG~GKTTTIaKLA~~l~~~g~~VllaA~DTFRAaA 182 (340)
T COG0552 147 VNGVGKTTTIAKLAKYLKQQGKSVLLAAGDTFRAAA 182 (340)
T ss_pred cCCCchHhHHHHHHHHHHHCCCeEEEEecchHHHHH
Confidence 99999999999999988 777766 689999753
No 10
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=98.77 E-value=3e-08 Score=90.88 Aligned_cols=87 Identities=20% Similarity=0.370 Sum_probs=59.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
+|+|+|+|||||||+|+.||.++|+.++..+|.+|+.+.... .| ...+..|...+..+...+ ..
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~~~~~~is~~d~lr~~~~~~~--------~~-------~~~~~~~~~~g~~~~~~~~~~ 65 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVENFGFTHLSAGDLLRAEIKSGS--------EN-------GELIESMIKNGKIVPSEVTVK 65 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCeEEECChHHHHHHhcCC--------hH-------HHHHHHHHHCCCcCCHHHHHH
Confidence 589999999999999999999999999877899999876311 01 123444544444444443 33
Q ss_pred HHHHHHhC--CCcEEEEcccCCccc
Q 011994 241 DLKKAMKD--GKPIIIEGIHLDPSI 263 (473)
Q Consensus 241 ~IekaL~e--G~sVIIEGvhL~Pel 263 (473)
.+..++.. +..+|+||.......
T Consensus 66 ll~~~~~~~~~~~~vlDg~p~~~~q 90 (183)
T TIGR01359 66 LLKNAIQADGSKKFLIDGFPRNEEN 90 (183)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHH
Confidence 44444432 678999997655443
No 11
>PRK14531 adenylate kinase; Provisional
Probab=98.73 E-value=6.8e-08 Score=89.90 Aligned_cols=87 Identities=15% Similarity=0.231 Sum_probs=59.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH-
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA- 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~- 239 (473)
..|+|+|+|||||||++..||.++|+.++..+|.+|+.+.... + ....+..|...+..+.+.+.
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is~gd~lr~~~~~~~--~-------------~~~~~~~~~~~G~~v~d~l~~ 67 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLSTGDLLRSEVAAGS--A-------------LGQEAEAVMNRGELVSDALVL 67 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEecccHHHHHHhcCC--H-------------HHHHHHHHHHcCCCCCHHHHH
Confidence 4699999999999999999999999999877899998865321 0 11234555555555555542
Q ss_pred HHHHHHHh--CCCcEEEEcccCCcc
Q 011994 240 GDLKKAMK--DGKPIIIEGIHLDPS 262 (473)
Q Consensus 240 ~~IekaL~--eG~sVIIEGvhL~Pe 262 (473)
..+...+. .+..+|+||......
T Consensus 68 ~~~~~~l~~~~~~g~ilDGfpr~~~ 92 (183)
T PRK14531 68 AIVESQLKALNSGGWLLDGFPRTVA 92 (183)
T ss_pred HHHHHHHhhccCCcEEEeCCCCCHH
Confidence 33433443 356688898665543
No 12
>PRK14974 cell division protein FtsY; Provisional
Probab=98.66 E-value=4.4e-07 Score=93.64 Aligned_cols=106 Identities=20% Similarity=0.233 Sum_probs=72.6
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccc-c-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV-S-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I-~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|...|..+||.+.+|.+|..++++.+.+.++..- . .+.+.+.+.+.|.+. +... ..+.+...+....+|.+|+|+
T Consensus 70 l~~~Ll~~dv~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~--~~~~~~~~~~~~~~~~vi~~~ 146 (336)
T PRK14974 70 LELELLESDVALEVAEEILESLKEKLVGKKVKRGEDVEEIVKNALKEALLEV-LSVG--DLFDLIEEIKSKGKPVVIVFV 146 (336)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHHHHHH-hCCC--cchhhhhhhhccCCCeEEEEE
Confidence 7788999999999999999999999988766422 1 223444444444331 1110 012333334445679999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPN-VLQTDMVYE 197 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~ 197 (473)
|++|+||||++..||..+ |... ++.+|++|.
T Consensus 147 G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~ 181 (336)
T PRK14974 147 GVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRA 181 (336)
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcH
Confidence 999999999999998776 5544 356787764
No 13
>PLN02200 adenylate kinase family protein
Probab=98.64 E-value=1.4e-07 Score=92.15 Aligned_cols=44 Identities=16% Similarity=0.386 Sum_probs=39.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+.|++|+|+|+|||||||+|..||.++|+.++..+|.+|+.+..
T Consensus 41 ~~~~ii~I~G~PGSGKsT~a~~La~~~g~~his~gdllR~~i~~ 84 (234)
T PLN02200 41 KTPFITFVLGGPGSGKGTQCEKIVETFGFKHLSAGDLLRREIAS 84 (234)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCeEEEccHHHHHHHhc
Confidence 45889999999999999999999999999998888999987653
No 14
>COG0645 Predicted kinase [General function prediction only]
Probab=98.63 E-value=1.6e-07 Score=88.66 Aligned_cols=86 Identities=24% Similarity=0.308 Sum_probs=66.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccc---cccChHHHHHHHHhcchhhHhH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWAR---NFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~---~y~s~EelI~gf~~q~~~V~eg 237 (473)
.+++++|.||+||||+|+.|++.+|... +.+|.+|+.|++.. .|.+ ..++.+... .|+..
T Consensus 2 ~l~l~~Gl~GsGKstlA~~l~~~lgA~~-lrsD~irk~L~g~p--------~~~r~~~g~ys~~~~~--------~vy~~ 64 (170)
T COG0645 2 RLVLVGGLPGSGKSTLARGLAELLGAIR-LRSDVIRKRLFGVP--------EETRGPAGLYSPAATA--------AVYDE 64 (170)
T ss_pred eEEEEecCCCccHhHHHHHHHhhcCceE-EehHHHHHHhcCCc--------ccccCCCCCCcHHHHH--------HHHHH
Confidence 5789999999999999999999999997 49999999998721 1221 112333333 34455
Q ss_pred HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
+......+|..|.+||+|++|..|..
T Consensus 65 l~~~A~l~l~~G~~VVlDa~~~r~~~ 90 (170)
T COG0645 65 LLGRAELLLSSGHSVVLDATFDRPQE 90 (170)
T ss_pred HHHHHHHHHhCCCcEEEecccCCHHH
Confidence 66777789999999999999999865
No 15
>PRK06762 hypothetical protein; Provisional
Probab=98.63 E-value=6.3e-08 Score=87.71 Aligned_cols=42 Identities=31% Similarity=0.462 Sum_probs=34.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~-Vi~tD~ir~~Lr 200 (473)
+|.+|+|+|+|||||||+|+.|+++++... ++..|.++..+.
T Consensus 1 m~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~D~~r~~l~ 43 (166)
T PRK06762 1 MTTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQDVVRRDML 43 (166)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecHHHHHHHhc
Confidence 588999999999999999999999995432 357888887653
No 16
>PLN02674 adenylate kinase
Probab=98.61 E-value=2.7e-07 Score=91.44 Aligned_cols=88 Identities=22% Similarity=0.298 Sum_probs=64.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
..++.|+|.|+|||||+|+|..||.++|+.++..+|.+|+.+.... + ....+..+...+..|...
T Consensus 29 ~~~~~i~l~G~PGsGKgT~a~~La~~~~~~his~GdllR~~i~~~s--~-------------~g~~i~~~~~~G~lvpd~ 93 (244)
T PLN02674 29 KPDKRLILIGPPGSGKGTQSPIIKDEYCLCHLATGDMLRAAVAAKT--P-------------LGIKAKEAMDKGELVSDD 93 (244)
T ss_pred ccCceEEEECCCCCCHHHHHHHHHHHcCCcEEchhHHHHHHHhccC--h-------------hhHHHHHHHHcCCccCHH
Confidence 3456799999999999999999999999999988899999875421 1 113567777777777777
Q ss_pred H-HHHHHHHHhC---CCcEEEEcccCC
Q 011994 238 L-AGDLKKAMKD---GKPIIIEGIHLD 260 (473)
Q Consensus 238 L-~~~IekaL~e---G~sVIIEGvhL~ 260 (473)
+ ..++...+.. +..+|+||.-..
T Consensus 94 iv~~lv~~~l~~~~~~~g~ilDGfPRt 120 (244)
T PLN02674 94 LVVGIIDEAMKKPSCQKGFILDGFPRT 120 (244)
T ss_pred HHHHHHHHHHhCcCcCCcEEEeCCCCC
Confidence 5 3455556643 356888885443
No 17
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=98.60 E-value=8.4e-08 Score=81.91 Aligned_cols=32 Identities=44% Similarity=0.711 Sum_probs=29.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD 193 (473)
+|+|+|+|||||||+|+.||+++|++++..+|
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 68999999999999999999999999875555
No 18
>PRK14532 adenylate kinase; Provisional
Probab=98.60 E-value=2.3e-07 Score=85.84 Aligned_cols=39 Identities=21% Similarity=0.356 Sum_probs=35.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.|+|.|+|||||||+|+.||+++|+.++..+|.+|+.+.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is~~d~lr~~~~ 40 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLSTGDMLRAAIA 40 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEeCcHHHHHHHH
Confidence 589999999999999999999999999877799998764
No 19
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=98.60 E-value=1.5e-07 Score=88.83 Aligned_cols=84 Identities=25% Similarity=0.465 Sum_probs=60.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH-H
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA-G 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~-~ 240 (473)
.|+|.|+||+||||+|++|+++++++++..+|.+|...... ......+..|..+..+|..++. .
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hlstgd~~r~~~~~~---------------t~lg~~~k~~i~~g~lv~d~i~~~ 66 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHLDTGDILRAAIAER---------------TELGEEIKKYIDKGELVPDEIVNG 66 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEcHhHHhHhhhccC---------------ChHHHHHHHHHHcCCccchHHHHH
Confidence 58999999999999999999999999985567777653321 1123456778888888877764 5
Q ss_pred HHHHHHhCC--C-cEEEEcccCC
Q 011994 241 DLKKAMKDG--K-PIIIEGIHLD 260 (473)
Q Consensus 241 ~IekaL~eG--~-sVIIEGvhL~ 260 (473)
.+...+.+. . .+|++|.-..
T Consensus 67 ~v~~rl~~~d~~~~~I~dg~PR~ 89 (178)
T COG0563 67 LVKERLDEADCKAGFILDGFPRT 89 (178)
T ss_pred HHHHHHHhhcccCeEEEeCCCCc
Confidence 565555543 2 5888884433
No 20
>PTZ00088 adenylate kinase 1; Provisional
Probab=98.59 E-value=2.3e-07 Score=90.70 Aligned_cols=86 Identities=24% Similarity=0.358 Sum_probs=60.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
..|+.|+|.|+|||||||+|+.||+++|++++..+|.+|+.+.... + ....+..|...+.+|...
T Consensus 4 ~~~mrIvl~G~PGsGK~T~a~~La~~~g~~~is~gdllr~~~~~~t--~-------------lg~~i~~~~~~G~lvpd~ 68 (229)
T PTZ00088 4 KGPLKIVLFGAPGVGKGTFAEILSKKENLKHINMGNILREEIKAKT--T-------------IGKEIQKVVTSGNLVPDN 68 (229)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCcEEECChHHHHHhhcCC--h-------------HHHHHHHHHHcCCcCCHH
Confidence 4578899999999999999999999999999988899998764311 1 123566677666555544
Q ss_pred H-HHHHHHHHh-----CCCcEEEEccc
Q 011994 238 L-AGDLKKAMK-----DGKPIIIEGIH 258 (473)
Q Consensus 238 L-~~~IekaL~-----eG~sVIIEGvh 258 (473)
+ ...+...+. .+..+|+||..
T Consensus 69 iv~~lv~~~l~~~~~~~~~g~iLDGfP 95 (229)
T PTZ00088 69 LVIAIVKDEIAKVTDDCFKGFILDGFP 95 (229)
T ss_pred HHHHHHHHHHHhhccccCceEEEecCC
Confidence 2 233333332 34668999943
No 21
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=98.58 E-value=2e-07 Score=88.44 Aligned_cols=84 Identities=18% Similarity=0.354 Sum_probs=57.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HHH
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AGD 241 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~~ 241 (473)
|+|.|+|||||||+|..||.++|+.++..+|.+|+.+..... ....+..+...+..|...+ ...
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~gdllr~~~~~~~~---------------~~~~~~~~~~~g~~vp~~~~~~l 66 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHISTGDLLRAEIKAGTP---------------LGKKAKEYMEKGELVPDEIVNQL 66 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeehhHHHHHhhccccH---------------HHHHHHHHHhCCCCCCHHHHHHH
Confidence 789999999999999999999999998778999987653210 1123455555555554442 344
Q ss_pred HHHHHhC----CCcEEEEcccCCc
Q 011994 242 LKKAMKD----GKPIIIEGIHLDP 261 (473)
Q Consensus 242 IekaL~e----G~sVIIEGvhL~P 261 (473)
+...+.. +..+|+||.....
T Consensus 67 ~~~~i~~~~~~~~~~ilDGfPrt~ 90 (210)
T TIGR01351 67 VKERLTQNQDNENGFILDGFPRTL 90 (210)
T ss_pred HHHHHhcCcccCCcEEEeCCCCCH
Confidence 4445543 5789999954433
No 22
>PRK14527 adenylate kinase; Provisional
Probab=98.57 E-value=2.4e-07 Score=86.52 Aligned_cols=43 Identities=28% Similarity=0.378 Sum_probs=38.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.+|.+|+|.|+|||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus 4 ~~~~~i~i~G~pGsGKsT~a~~La~~~~~~~is~gd~~r~~~~ 46 (191)
T PRK14527 4 TKNKVVIFLGPPGAGKGTQAERLAQELGLKKLSTGDILRDHVA 46 (191)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHhCCCCCCccHHHHHHHh
Confidence 4678999999999999999999999999998867788887653
No 23
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=98.56 E-value=2.2e-07 Score=91.81 Aligned_cols=88 Identities=27% Similarity=0.341 Sum_probs=59.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccC-hHHHHHHHHhcchhhHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSS-SEELVTEFVRECRIVRK 236 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s-~EelI~gf~~q~~~V~e 236 (473)
++.+|+++|+|||||||+|+.|++++ ++.+ +..|.+++.+..... . .|. .|.. .+. .+..
T Consensus 1 m~~liil~G~pGSGKSTla~~L~~~~~~~~~-l~~D~~r~~~~~~~~--~----~~~-~~~~~~~~----------~~~~ 62 (300)
T PHA02530 1 MMKIILTVGVPGSGKSTWAREFAAKNPKAVN-VNRDDLRQSLFGHGE--W----GEY-KFTKEKED----------LVTK 62 (300)
T ss_pred CcEEEEEEcCCCCCHHHHHHHHHHHCCCCEE-EeccHHHHHhcCCCc--c----ccc-ccChHHHH----------HHHH
Confidence 36799999999999999999999999 7765 477888877543211 1 110 1110 111 1222
Q ss_pred HHHHHHHHHHhCCCcEEEEcccCCcccc
Q 011994 237 GLAGDLKKAMKDGKPIIIEGIHLDPSIY 264 (473)
Q Consensus 237 gL~~~IekaL~eG~sVIIEGvhL~Pel~ 264 (473)
.+...+..++..|..+|++++++.|...
T Consensus 63 ~~~~~~~~~l~~g~~vIid~~~~~~~~~ 90 (300)
T PHA02530 63 AQEAAALAALKSGKSVIISDTNLNPERR 90 (300)
T ss_pred HHHHHHHHHHHcCCeEEEeCCCCCHHHH
Confidence 3344556677899999999999987764
No 24
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=98.53 E-value=3.9e-07 Score=85.95 Aligned_cols=41 Identities=34% Similarity=0.485 Sum_probs=37.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
++|.|.|+|||||||+|+.||++||+++|.+++.||+..+.
T Consensus 1 m~ItIsG~pGsG~TTva~~lAe~~gl~~vsaG~iFR~~A~e 41 (179)
T COG1102 1 MVITISGLPGSGKTTVARELAEHLGLKLVSAGTIFREMARE 41 (179)
T ss_pred CEEEeccCCCCChhHHHHHHHHHhCCceeeccHHHHHHHHH
Confidence 47999999999999999999999999999889999987654
No 25
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=98.53 E-value=4e-07 Score=83.09 Aligned_cols=39 Identities=15% Similarity=0.371 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|+|.|+|||||||+++.|+..+|+.++..+|.+++.+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~~g~~~~~~~~ 43 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLSTGDLLRAEVA 43 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHh
Confidence 788999999999999999999999999877788888653
No 26
>PRK00279 adk adenylate kinase; Reviewed
Probab=98.49 E-value=5.9e-07 Score=85.49 Aligned_cols=84 Identities=17% Similarity=0.348 Sum_probs=55.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
.|+|.|+|||||||+|+.||.++|+.++..+|.+|+.+.... + ....+..+...+..+...+ ..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is~~dl~r~~~~~~~-------~--------~~~~~~~~~~~g~~~p~~~~~~ 66 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHISTGDMLRAAVKAGT-------E--------LGKEAKSYMDAGELVPDEIVIG 66 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEECCccHHHHHhccc-------h--------HHHHHHHHHHcCCcCCHHHHHH
Confidence 589999999999999999999999999877899998765421 0 1123444444444444432 33
Q ss_pred HHHHHHhC---CCcEEEEcccCC
Q 011994 241 DLKKAMKD---GKPIIIEGIHLD 260 (473)
Q Consensus 241 ~IekaL~e---G~sVIIEGvhL~ 260 (473)
.+...+.. +..+|+||....
T Consensus 67 ~i~~~l~~~~~~~g~VlDGfPr~ 89 (215)
T PRK00279 67 LVKERLAQPDCKNGFLLDGFPRT 89 (215)
T ss_pred HHHHHHhccCccCCEEEecCCCC
Confidence 34434432 347999995433
No 27
>PRK14530 adenylate kinase; Provisional
Probab=98.48 E-value=5.8e-07 Score=85.57 Aligned_cols=88 Identities=17% Similarity=0.306 Sum_probs=56.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
.|+|.|+|||||||+|+.||+++|+.++..+|.+++....... ++ ......+..+...+..+...+ ..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~g~~lr~~~~~~~~-~~----------~~~~~~~~~~~~~g~~~~d~~~~~ 73 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTTGDALRANKQMDIS-DM----------DTEYDTPGEYMDAGELVPDAVVNE 73 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeccHHHHHhccCCcc-cc----------cchHHHHHHHHHcCCCCCHHHHHH
Confidence 5889999999999999999999999999888999986422111 00 000011233444444444433 34
Q ss_pred HHHHHHhCCCcEEEEcccCC
Q 011994 241 DLKKAMKDGKPIIIEGIHLD 260 (473)
Q Consensus 241 ~IekaL~eG~sVIIEGvhL~ 260 (473)
.+...+.....+|+||....
T Consensus 74 ~l~~~l~~~~~~IldG~pr~ 93 (215)
T PRK14530 74 IVEEALSDADGFVLDGYPRN 93 (215)
T ss_pred HHHHHHhcCCCEEEcCCCCC
Confidence 45566666678999984333
No 28
>PLN02459 probable adenylate kinase
Probab=98.48 E-value=6.4e-07 Score=89.67 Aligned_cols=90 Identities=23% Similarity=0.358 Sum_probs=66.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
.+|+.|+|.|+|||||+|+|..||..+|+.+|..+|.+|+.+.... + ....+..|..++..|...
T Consensus 27 ~~~~~ii~~G~PGsGK~T~a~~la~~~~~~~is~gdllR~ei~~~t--~-------------lg~~i~~~~~~G~lVPde 91 (261)
T PLN02459 27 GRNVNWVFLGCPGVGKGTYASRLSKLLGVPHIATGDLVREEIKSSG--P-------------LGAQLKEIVNQGKLVPDE 91 (261)
T ss_pred cCccEEEEECCCCCCHHHHHHHHHHHhCCcEEeCcHHHHHHHhccc--h-------------hHHHHHHHHHcCCccCHH
Confidence 3567788899999999999999999999999988999999865321 1 123577888888888777
Q ss_pred H-HHHHHHHHhC-----CCcEEEEcccCCcc
Q 011994 238 L-AGDLKKAMKD-----GKPIIIEGIHLDPS 262 (473)
Q Consensus 238 L-~~~IekaL~e-----G~sVIIEGvhL~Pe 262 (473)
+ ..++...|.. ...+|+||.-..-.
T Consensus 92 iv~~ll~~~l~~~~~~~~~g~iLDGFPRt~~ 122 (261)
T PLN02459 92 IIFSLLSKRLEAGEEEGESGFILDGFPRTVR 122 (261)
T ss_pred HHHHHHHHHHhcccccCCceEEEeCCCCCHH
Confidence 5 3455555543 35588998554433
No 29
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=98.46 E-value=8.9e-07 Score=81.37 Aligned_cols=82 Identities=27% Similarity=0.441 Sum_probs=54.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HHHH
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LAGD 241 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~~~ 241 (473)
|+|.|+|||||||+|..||.++|+.++..+|.+++.+.... +. ...+..+...+..+... +...
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~~~l~~~~~~~~~-------~~--------~~~~~~~~~~g~~~~~~~~~~l 66 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHISTGDLLREEIASGT-------EL--------GKKAKEYIDSGKLVPDEIVIKL 66 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEECcHHHHHHHhcCC-------hH--------HHHHHHHHHcCCccCHHHHHHH
Confidence 79999999999999999999999999877888888754321 11 11233343333333332 2344
Q ss_pred HHHHHhC---CCcEEEEcccC
Q 011994 242 LKKAMKD---GKPIIIEGIHL 259 (473)
Q Consensus 242 IekaL~e---G~sVIIEGvhL 259 (473)
+...+.. +..+|+||...
T Consensus 67 ~~~~l~~~~~~~~~vldg~Pr 87 (194)
T cd01428 67 LKERLKKPDCKKGFILDGFPR 87 (194)
T ss_pred HHHHHhcccccCCEEEeCCCC
Confidence 4555553 57799998533
No 30
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=98.45 E-value=6.1e-07 Score=84.60 Aligned_cols=93 Identities=26% Similarity=0.332 Sum_probs=54.6
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHhhCCCCCCCCCcccccc----ccChHHHHHHHHh
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLRTSTDAPLSSSPVWARN----FSSSEELVTEFVR 229 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~----y~s~EelI~gf~~ 229 (473)
....|.+++++|+|||||||++..+...+ +-..++..|.++..+ +.|... ......... .
T Consensus 11 ~~~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~~~-----------p~~~~~~~~~~~~~~~~~~---~ 76 (199)
T PF06414_consen 11 PQEKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQFH-----------PDYDELLKADPDEASELTQ---K 76 (199)
T ss_dssp --SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGGGS-----------TTHHHHHHHHCCCTHHHHH---H
T ss_pred cccCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHHhc-----------cchhhhhhhhhhhhHHHHH---H
Confidence 45789999999999999999999999987 444456888887642 112210 000001111 1
Q ss_pred cchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc
Q 011994 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL 265 (473)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l 265 (473)
.+. ......++.++.++.+||+||++-.|+.+.
T Consensus 77 ~a~---~~~~~~~~~a~~~~~nii~E~tl~~~~~~~ 109 (199)
T PF06414_consen 77 EAS---RLAEKLIEYAIENRYNIIFEGTLSNPSKLR 109 (199)
T ss_dssp HHH---HHHHHHHHHHHHCT--EEEE--TTSSHHHH
T ss_pred HHH---HHHHHHHHHHHHcCCCEEEecCCCChhHHH
Confidence 111 123456778899999999999999998874
No 31
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=98.44 E-value=1.4e-06 Score=78.36 Aligned_cols=39 Identities=33% Similarity=0.522 Sum_probs=33.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
++|+|.|.+||||||+|..|++++|++++..+|.+++..
T Consensus 1 ~iI~i~G~~GSGKstia~~la~~lg~~~~~~~~~~~~~~ 39 (171)
T TIGR02173 1 MIITISGPPGSGKTTVAKILAEKLSLKLISAGDIFRELA 39 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCceecHHHHHHHHH
Confidence 489999999999999999999999999875556666643
No 32
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=98.38 E-value=7.1e-06 Score=82.12 Aligned_cols=99 Identities=26% Similarity=0.271 Sum_probs=69.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG 167 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G 167 (473)
|...|..+||.+..|.+|..++++.+.+.+... .+.+...+.+.|.+. +.. . ...+. ....|.+|+++|
T Consensus 10 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~~--~~~~~~~~~e~l~~~-~~~-----~--~~~~~~~~~~~~vi~l~G 79 (272)
T TIGR00064 10 LEEILLESDVGYEVVEKIIEALKKELKGKKVKD--AELLKEILKEYLKEI-LKE-----T--DLELIVEENKPNVILFVG 79 (272)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccCCC--HHHHHHHHHHHHHHH-Hcc-----c--chhhcccCCCCeEEEEEC
Confidence 677899999999999999999999987665543 345566666655542 111 0 01111 234578999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCe-EEcchhHHH
Q 011994 168 TACVGKSTIATQLAQRL---NLPN-VLQTDMVYE 197 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~ 197 (473)
++|+||||++..||..+ |... ++..|.+|.
T Consensus 80 ~~G~GKTTt~akLA~~l~~~g~~V~li~~D~~r~ 113 (272)
T TIGR00064 80 VNGVGKTTTIAKLANKLKKQGKSVLLAAGDTFRA 113 (272)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCEEEEEeCCCCCH
Confidence 99999999999999877 5443 346676543
No 33
>PRK03839 putative kinase; Provisional
Probab=98.36 E-value=5.2e-07 Score=83.08 Aligned_cols=36 Identities=33% Similarity=0.510 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|+|.|+|||||||+|+.||+++|++++..+|.+++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d~~~~~ 37 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLTEFALK 37 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehhhhhhh
Confidence 689999999999999999999999999766666654
No 34
>PRK04040 adenylate kinase; Provisional
Probab=98.36 E-value=2.2e-06 Score=81.25 Aligned_cols=42 Identities=26% Similarity=0.403 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL--NLPNVLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~tD~ir~~Lr 200 (473)
.|++|+|+|.|||||||+++.|++++ ++.++..+|.+++...
T Consensus 1 ~~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~~~g~~~~~~a~ 44 (188)
T PRK04040 1 MMKVVVVTGVPGVGKTTVLNKALEKLKEDYKIVNFGDVMLEVAK 44 (188)
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHhccCCeEEecchHHHHHHH
Confidence 36799999999999999999999999 8998878888777644
No 35
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=98.35 E-value=1.4e-06 Score=78.30 Aligned_cols=78 Identities=23% Similarity=0.398 Sum_probs=56.2
Q ss_pred EEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HHHHH
Q 011994 165 VCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AGDLK 243 (473)
Q Consensus 165 I~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~~Ie 243 (473)
|.|+|||||+|+|..||.++|+.+|...|.+|+.+.... + ....+..+...+..|...+ ...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is~~~llr~~~~~~s-------~--------~g~~i~~~l~~g~~vp~~~v~~ll~ 65 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHISVGDLLREEIKSDS-------E--------LGKQIQEYLDNGELVPDELVIELLK 65 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEEHHHHHHHHHHTTS-------H--------HHHHHHHHHHTTSS--HHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcceechHHHHHHHHhhhh-------H--------HHHHHHHHHHhhccchHHHHHHHHH
Confidence 689999999999999999999999988999999875311 1 1235677777777776664 34455
Q ss_pred HHHh---CCCcEEEEcc
Q 011994 244 KAMK---DGKPIIIEGI 257 (473)
Q Consensus 244 kaL~---eG~sVIIEGv 257 (473)
..+. ....+|+||.
T Consensus 66 ~~l~~~~~~~g~ildGf 82 (151)
T PF00406_consen 66 ERLEQPPCNRGFILDGF 82 (151)
T ss_dssp HHHHSGGTTTEEEEESB
T ss_pred HHHhhhcccceeeeeec
Confidence 5554 3467888885
No 36
>PRK04182 cytidylate kinase; Provisional
Probab=98.35 E-value=2.9e-06 Score=76.74 Aligned_cols=40 Identities=33% Similarity=0.548 Sum_probs=33.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
++|+|.|.+||||||+|+.||.++|++++..+|.+++...
T Consensus 1 ~~I~i~G~~GsGKstia~~la~~lg~~~id~~~~~~~~~~ 40 (180)
T PRK04182 1 MIITISGPPGSGKTTVARLLAEKLGLKHVSAGEIFRELAK 40 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHcCCcEecHHHHHHHHHH
Confidence 4799999999999999999999999998754666776543
No 37
>PRK13808 adenylate kinase; Provisional
Probab=98.35 E-value=1.2e-05 Score=83.13 Aligned_cols=39 Identities=23% Similarity=0.358 Sum_probs=35.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.|+|.|+|||||||++..|+..+|+.++..+|.+|+.+.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~gdlLR~~i~ 40 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLSTGDMLRAAVA 40 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecccHHHHHHhh
Confidence 488999999999999999999999999888899998764
No 38
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=98.34 E-value=2.5e-06 Score=78.65 Aligned_cols=90 Identities=20% Similarity=0.241 Sum_probs=56.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhhCCCCCCCCCcccccc--ccChHHHHHHHHhcchhhHhH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARN--FSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~Lr~~~s~pL~~~~~W~~~--y~s~EelI~gf~~q~~~V~eg 237 (473)
.+|+|.|+|||||||+|+.|+..++..++ +..|.++..+........ ...+... .+.++... ..++..
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~-------~~~y~~ 73 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSFIEALPLKCQDAE--GGIEFDGDGGVSPGPEF-------RLLEGA 73 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHHHHhcChhhcccc--cccccCccCCcccchHH-------HHHHHH
Confidence 48999999999999999999999876544 367888776542110000 0000000 00111111 123444
Q ss_pred HHHHHHHHHhCCCcEEEEcccC
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHL 259 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL 259 (473)
+...+...++.|..||+|+++.
T Consensus 74 ~~~~~~~~l~~G~~VIvD~~~~ 95 (175)
T cd00227 74 WYEAVAAMARAGANVIADDVFL 95 (175)
T ss_pred HHHHHHHHHhCCCcEEEeeecc
Confidence 5566777889999999999877
No 39
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=98.33 E-value=2.4e-06 Score=90.93 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=72.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
+.+.|.++||.+.++.++..++++.+.+..+.. ++ ...+...+++.|.+. ++.. ...+. ....+|.+|+|+
T Consensus 34 i~~aLleaDV~~~vv~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~~L~~~-l~~~-~~~~~-----~~~~~~~vi~lv 106 (429)
T TIGR01425 34 ICTALLESDVNIKLVRQLRENIKKAINLEEMASGLNKRKMIQHAVFKELCNL-VDPG-VEAFT-----PKKGKQNVIMFV 106 (429)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hCCC-Ccccc-----ccCCCCeEEEEE
Confidence 678899999999999999999999988776542 22 234566666665541 1111 00111 123568999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~ 197 (473)
|++|+||||++..||..+ |.. .++.+|.+|-
T Consensus 107 G~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~ 141 (429)
T TIGR01425 107 GLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRA 141 (429)
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccch
Confidence 999999999999999877 654 4457888773
No 40
>PRK02496 adk adenylate kinase; Provisional
Probab=98.32 E-value=3.3e-06 Score=78.03 Aligned_cols=41 Identities=24% Similarity=0.458 Sum_probs=36.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+.|+|.|+|||||||+|+.|+..+|+.++..+|.+++.+..
T Consensus 2 ~~i~i~G~pGsGKst~a~~la~~~~~~~i~~~~~~~~~~~~ 42 (184)
T PRK02496 2 TRLIFLGPPGAGKGTQAVVLAEHLHIPHISTGDILRQAIKE 42 (184)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEEhHHHHHHHHhc
Confidence 46899999999999999999999999998777888887643
No 41
>PRK14529 adenylate kinase; Provisional
Probab=98.31 E-value=1.8e-06 Score=84.46 Aligned_cols=87 Identities=15% Similarity=0.255 Sum_probs=62.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
.|+|.|+|||||||+|..|+.++|+.++..+|.+|+.+.... + ....+..|...+..|...+ ..
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is~gdllr~~i~~~t--~-------------lg~~i~~~i~~G~lvpdei~~~ 66 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIESGAIFREHIGGGT--E-------------LGKKAKEYIDRGDLVPDDITIP 66 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcccchhhhhhccCCC--h-------------HHHHHHHHHhccCcchHHHHHH
Confidence 588999999999999999999999999877899998653211 1 1235677777777777764 34
Q ss_pred HHHHHHhC--CCcEEEEcccCCccc
Q 011994 241 DLKKAMKD--GKPIIIEGIHLDPSI 263 (473)
Q Consensus 241 ~IekaL~e--G~sVIIEGvhL~Pel 263 (473)
.+...|.. ...+|+||.--.-..
T Consensus 67 lv~~~l~~~~~~g~iLDGfPRt~~Q 91 (223)
T PRK14529 67 MILETLKQDGKNGWLLDGFPRNKVQ 91 (223)
T ss_pred HHHHHHhccCCCcEEEeCCCCCHHH
Confidence 55555543 456889885444433
No 42
>PRK06217 hypothetical protein; Validated
Probab=98.29 E-value=1.5e-06 Score=80.74 Aligned_cols=35 Identities=31% Similarity=0.636 Sum_probs=30.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
+.|+|.|.|||||||+|+.|++.+|++++ ..|.+.
T Consensus 2 ~~I~i~G~~GsGKSTla~~L~~~l~~~~~-~~D~~~ 36 (183)
T PRK06217 2 MRIHITGASGSGTTTLGAALAERLDIPHL-DTDDYF 36 (183)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCcEE-EcCcee
Confidence 46999999999999999999999999986 555444
No 43
>PRK07261 topology modulation protein; Provisional
Probab=98.28 E-value=1.3e-06 Score=81.01 Aligned_cols=33 Identities=36% Similarity=0.512 Sum_probs=28.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.|+|+|+|||||||+|+.|+..+|++++ ..|.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i-~~D~~ 34 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVL-HLDTL 34 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeE-ecCCE
Confidence 5899999999999999999999999976 44444
No 44
>PRK14528 adenylate kinase; Provisional
Probab=98.26 E-value=4.9e-06 Score=78.16 Aligned_cols=80 Identities=21% Similarity=0.416 Sum_probs=53.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
.|+|.|+|||||||+|+.|+..+|++++..+|.+|+.+.... + ....+..|...+..+...+ ..
T Consensus 3 ~i~i~G~pGsGKtt~a~~la~~~~~~~is~~~~lr~~~~~~~--~-------------~g~~~~~~~~~g~lvp~~~~~~ 67 (186)
T PRK14528 3 NIIFMGPPGAGKGTQAKILCERLSIPQISTGDILREAVKNQT--A-------------MGIEAKRYMDAGDLVPDSVVIG 67 (186)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeeeCCHHHHHHhhcCC--H-------------HHHHHHHHHhCCCccCHHHHHH
Confidence 589999999999999999999999999888888888764311 0 0112445555554444442 23
Q ss_pred HHHHHHhC---CCcEEEEc
Q 011994 241 DLKKAMKD---GKPIIIEG 256 (473)
Q Consensus 241 ~IekaL~e---G~sVIIEG 256 (473)
.+...+.+ ..-+|+||
T Consensus 68 ~~~~~l~~~~~~~g~viDG 86 (186)
T PRK14528 68 IIKDRIREADCKNGFLLDG 86 (186)
T ss_pred HHHHHHhCcCccCcEEEeC
Confidence 33333332 34588988
No 45
>KOG3079 consensus Uridylate kinase/adenylate kinase [Nucleotide transport and metabolism]
Probab=98.26 E-value=3.2e-06 Score=81.10 Aligned_cols=88 Identities=18% Similarity=0.351 Sum_probs=68.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e 236 (473)
...|.||++.|.|||||-|.+.+++..+|+.|+.++|.+|+...+..+ . ...++..++..+.+|..
T Consensus 5 ~~~~~IifVlGGPGsgKgTqC~kiv~ky~ftHlSaGdLLR~E~~~~gs------e--------~g~~I~~~i~~G~iVP~ 70 (195)
T KOG3079|consen 5 LDKPPIIFVLGGPGSGKGTQCEKIVEKYGFTHLSAGDLLRAEIASAGS------E--------RGALIKEIIKNGDLVPV 70 (195)
T ss_pred ccCCCEEEEEcCCCCCcchHHHHHHHHcCceeecHHHHHHHHHccccC------h--------HHHHHHHHHHcCCcCcH
Confidence 456889999999999999999999999999999889999998554211 1 23578999999999988
Q ss_pred HH-HHHHHHHHhCCCc---EEEEccc
Q 011994 237 GL-AGDLKKAMKDGKP---IIIEGIH 258 (473)
Q Consensus 237 gL-~~~IekaL~eG~s---VIIEGvh 258 (473)
++ ..+++.+|..-.. ++|||.-
T Consensus 71 ei~~~LL~~am~~~~~~~~fLIDGyP 96 (195)
T KOG3079|consen 71 EITLSLLEEAMRSSGDSNGFLIDGYP 96 (195)
T ss_pred HHHHHHHHHHHHhcCCCCeEEecCCC
Confidence 85 5667777754333 8888843
No 46
>PRK14526 adenylate kinase; Provisional
Probab=98.26 E-value=4e-06 Score=80.99 Aligned_cols=84 Identities=21% Similarity=0.355 Sum_probs=56.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-HH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-AG 240 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~~ 240 (473)
.|+|.|+|||||||+++.||..+|+.++..+|.+|+.+.... + ....+..+...+..|...+ ..
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~is~G~llr~~~~~~t-------~--------~g~~i~~~~~~g~lvpd~~~~~ 66 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHISTGDLFRENILNST-------P--------LGKEIKQIVENGQLVPDSITIK 66 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceeecChHHHHhcccCC-------h--------hhHHHHHHHHcCccCChHHHHH
Confidence 478999999999999999999999999888899998754321 0 1123555555555555544 23
Q ss_pred HHHHHHh---CCCcEEEEcccCC
Q 011994 241 DLKKAMK---DGKPIIIEGIHLD 260 (473)
Q Consensus 241 ~IekaL~---eG~sVIIEGvhL~ 260 (473)
.+...|. ....+|+||.--.
T Consensus 67 lv~~~l~~~~~~~g~ilDGfPR~ 89 (211)
T PRK14526 67 IVEDKINTIKNNDNFILDGFPRN 89 (211)
T ss_pred HHHHHHhcccccCcEEEECCCCC
Confidence 3444443 2456888875443
No 47
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=98.23 E-value=2.4e-06 Score=76.06 Aligned_cols=35 Identities=37% Similarity=0.556 Sum_probs=30.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|+|+|+|||||||+|+.|+..++..++ ..|.++.
T Consensus 1 li~l~G~~GsGKST~a~~l~~~~~~~~i-~~D~~~~ 35 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAERLGAPFI-DGDDLHP 35 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhhcCCEEE-eCccccc
Confidence 5899999999999999999999999875 6777775
No 48
>PRK01184 hypothetical protein; Provisional
Probab=98.23 E-value=7.3e-06 Score=75.63 Aligned_cols=40 Identities=25% Similarity=0.453 Sum_probs=34.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
++|+|+|+|||||||++. ++.++|++++..+|.+|+.+..
T Consensus 2 ~~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~~d~lr~~~~~ 41 (184)
T PRK01184 2 KIIGVVGMPGSGKGEFSK-IAREMGIPVVVMGDVIREEVKK 41 (184)
T ss_pred cEEEEECCCCCCHHHHHH-HHHHcCCcEEEhhHHHHHHHHH
Confidence 489999999999999987 7889999987667999998643
No 49
>PRK10867 signal recognition particle protein; Provisional
Probab=98.21 E-value=4e-06 Score=89.31 Aligned_cols=103 Identities=19% Similarity=0.226 Sum_probs=71.3
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-ccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|.+.|.++||.+.++.++..++++.+.+.++.. ++. +.+...+.+.|.+. ++.. ...+.+ ....|.+|+++
T Consensus 34 i~~~Ll~aDV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~el~~~-l~~~-~~~~~~-----~~~~p~vI~~v 106 (433)
T PRK10867 34 VRLALLEADVNLPVVKDFIARVKEKAVGQEVLKSLTPGQQVIKIVNDELVEI-LGGE-NSELNL-----AAKPPTVIMMV 106 (433)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hCCC-cceeee-----cCCCCEEEEEE
Confidence 778899999999999999999999988766532 332 33555555544431 1110 001111 23468999999
Q ss_pred cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHHH
Q 011994 167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYEL 198 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~~ 198 (473)
|++|+||||++..||..+ |.. .++..|.+|-.
T Consensus 107 G~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~R~a 143 (433)
T PRK10867 107 GLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVYRPA 143 (433)
T ss_pred CCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccccchH
Confidence 999999999999999866 443 34578877753
No 50
>PRK08118 topology modulation protein; Reviewed
Probab=98.21 E-value=3.3e-06 Score=78.34 Aligned_cols=33 Identities=39% Similarity=0.629 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.|+|+|+|||||||+|+.|++.+|++++ ..|.+
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~-~lD~l 35 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVH-HLDAL 35 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCce-ecchh
Confidence 5899999999999999999999999986 44443
No 51
>PRK00131 aroK shikimate kinase; Reviewed
Probab=98.19 E-value=1.1e-05 Score=72.45 Aligned_cols=39 Identities=36% Similarity=0.380 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.|.+|+|+|+|||||||+|..||+++|++++ ..|.+.+.
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~-d~d~~~~~ 41 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFI-DTDHLIEA 41 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEE-EChHHHHH
Confidence 4679999999999999999999999999987 55655543
No 52
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.19 E-value=2.1e-05 Score=83.85 Aligned_cols=101 Identities=16% Similarity=0.190 Sum_probs=68.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~ 168 (473)
|...|...||.+..|.+|...+...+...... ..+.+.+.+.+.|... +... -.++.. ....++.+|+|+|+
T Consensus 160 L~~~Ll~~gV~~~la~~Li~~l~~~~~~~~~~--~~~~~~~~l~~~L~~~-l~~~----~~~~~~-~g~~~~~vi~lvGp 231 (432)
T PRK12724 160 LGERLVREGMSQSYVEEMASKLEERLSPVDQG--RNHNVTERAVTYLEER-VSVD----SDLFSG-TGKNQRKVVFFVGP 231 (432)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHhhcccccc--chHHHHHHHHHHHHHh-cccc----hhhhhh-cccCCCeEEEEECC
Confidence 56899999999999999999999887654433 2345667777777652 1110 011110 11234679999999
Q ss_pred CCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 011994 169 ACVGKSTIATQLAQRL----NLP-NVLQTDMVYE 197 (473)
Q Consensus 169 ~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~ 197 (473)
+|+||||++..||..+ |.. .++..|..|.
T Consensus 232 tGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~ 265 (432)
T PRK12724 232 TGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI 265 (432)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh
Confidence 9999999999999755 333 3456788665
No 53
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=98.17 E-value=5.8e-06 Score=80.42 Aligned_cols=77 Identities=32% Similarity=0.544 Sum_probs=51.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|+|+|.|||||||+|+.|+..+ |+.+ ++.+|.+++.+. .|... ...+ +...
T Consensus 1 LIvl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~lr~~~~-----------~~~~~-------~e~~------~~~~ 56 (249)
T TIGR03574 1 LIILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLIRESFP-----------VWKEK-------YEEF------IRDS 56 (249)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHHHHHhH-----------HhhHH-------hHHH------HHHH
Confidence 48999999999999999999988 4543 346788877531 12211 0011 1122
Q ss_pred HHHHHHHHHhCCCcEEEEcccCCcc
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHLDPS 262 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL~Pe 262 (473)
....+..++..|..||+|+.+...+
T Consensus 57 ~~~~i~~~l~~~~~VI~D~~~~~~~ 81 (249)
T TIGR03574 57 TLYLIKTALKNKYSVIVDDTNYYNS 81 (249)
T ss_pred HHHHHHHHHhCCCeEEEeccchHHH
Confidence 3345677888899999999875544
No 54
>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase. Note that the EC number for the kinase function is: 2.7.1.78
Probab=98.17 E-value=4.9e-06 Score=90.58 Aligned_cols=69 Identities=17% Similarity=0.224 Sum_probs=54.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e 236 (473)
..+|.+|+++|+|||||||+|+.++..+|+.+| +.|.+.. | .
T Consensus 366 ~~~p~LVil~G~pGSGKST~A~~l~~~~g~~~v-n~D~lg~---------------~----------------------~ 407 (526)
T TIGR01663 366 DAPCEMVIAVGFPGAGKSHFCKKFFQPAGYKHV-NADTLGS---------------T----------------------Q 407 (526)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHcCCeEE-CcHHHHH---------------H----------------------H
Confidence 456889999999999999999999999998875 6666521 0 1
Q ss_pred HHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 237 GLAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 237 gL~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
.+...++.+|..|.+||||++++.+..
T Consensus 408 ~~~~~a~~~L~~G~sVVIDaTn~~~~~ 434 (526)
T TIGR01663 408 NCLTACERALDQGKRCAIDNTNPDAAS 434 (526)
T ss_pred HHHHHHHHHHhCCCcEEEECCCCCHHH
Confidence 123346778999999999999999854
No 55
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=98.17 E-value=7.1e-06 Score=71.68 Aligned_cols=31 Identities=45% Similarity=0.655 Sum_probs=28.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD 193 (473)
+|+|+|++||||||+|..||.++|++++ ..|
T Consensus 1 ~I~i~G~~GsGKst~a~~la~~~~~~~~-~~~ 31 (147)
T cd02020 1 IIAIDGPAGSGKSTVAKLLAKKLGLPYL-DTG 31 (147)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcee-ccc
Confidence 5899999999999999999999999987 444
No 56
>PRK13948 shikimate kinase; Provisional
Probab=98.17 E-value=1.1e-05 Score=76.36 Aligned_cols=44 Identities=27% Similarity=0.278 Sum_probs=36.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
...|..|++.|.+||||||+++.||.+||+++| .+|.+.+.+.+
T Consensus 7 ~~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~i-D~D~~ie~~~g 50 (182)
T PRK13948 7 ERPVTWVALAGFMGTGKSRIGWELSRALMLHFI-DTDRYIERVTG 50 (182)
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-ECCHHHHHHHh
Confidence 456789999999999999999999999999987 67766555443
No 57
>PRK00625 shikimate kinase; Provisional
Probab=98.16 E-value=7.7e-06 Score=76.80 Aligned_cols=38 Identities=32% Similarity=0.539 Sum_probs=33.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
.|+|+|+|||||||+++.||+++|++++..++.+++.+
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D~~I~~~~ 39 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTDDLIVSNY 39 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhhHHHHHHh
Confidence 68999999999999999999999999986655666654
No 58
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=98.15 E-value=1.1e-05 Score=82.62 Aligned_cols=100 Identities=21% Similarity=0.239 Sum_probs=69.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
=|...|..+||.+..|.+|...+++.+.+.... +.+.+...+.+.|.+. +... ...+. ...+.|.+|+|+|
T Consensus 51 ~l~~~L~~~dv~~~~a~~i~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~-~~~~~-----~~~~~~~vi~lvG 121 (318)
T PRK10416 51 ELEELLIEADVGVETTEEIIEELRERVKRKNLK--DPEELKELLKEELAEI-LEPV-EKPLN-----IEEKKPFVILVVG 121 (318)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhccCCC--CHHHHHHHHHHHHHHH-hCcC-Ccccc-----ccCCCCeEEEEEC
Confidence 367889999999999999999999988765432 3445666666665542 1100 00011 1234688999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994 168 TACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir 196 (473)
++|+||||++..||..+ |..+. +..|..|
T Consensus 122 pnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r 154 (318)
T PRK10416 122 VNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFR 154 (318)
T ss_pred CCCCcHHHHHHHHHHHHHhcCCeEEEEecCccc
Confidence 99999999999999887 44333 4567765
No 59
>PRK13946 shikimate kinase; Provisional
Probab=98.15 E-value=1.5e-05 Score=74.43 Aligned_cols=41 Identities=29% Similarity=0.365 Sum_probs=34.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.+..|+++|++||||||+++.||++||++++ .+|.+.+.+.
T Consensus 9 ~~~~I~l~G~~GsGKsti~~~LA~~Lg~~~i-d~D~~~~~~~ 49 (184)
T PRK13946 9 GKRTVVLVGLMGAGKSTVGRRLATMLGLPFL-DADTEIERAA 49 (184)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCeE-CcCHHHHHHh
Confidence 4568999999999999999999999999986 7776655443
No 60
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=98.12 E-value=8.2e-06 Score=86.70 Aligned_cols=102 Identities=19% Similarity=0.253 Sum_probs=72.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCC-hhhHHHHHHHHHhhccCCCeEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYG-EEYISRYRMMTRFHHQRVPLVILV 165 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yg-e~~a~rY~l~~~~~~~~~P~iIlI 165 (473)
+.+.|.++||.+.+.-....+++++.++..+. .++. +.+-..|++-|.+- .| ++ ..+ ....+.|.+|++
T Consensus 34 ir~ALLeADVnl~vVk~fi~~ikera~g~ev~~~l~p~q~~iKiV~eELv~l-lG~~~----~~~---~l~~~~P~vImm 105 (451)
T COG0541 34 IRRALLEADVNLKVVKDFIKRIKERALGEEVPKGLTPGQQFIKIVYEELVKL-LGGEN----SEL---NLAKKPPTVILM 105 (451)
T ss_pred HHHHHHhccccHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH-hCCCC----ccc---ccCCCCCeEEEE
Confidence 57899999999999999999999999998875 2332 33444444433331 11 11 011 012567999999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994 166 CGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL 198 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~ 198 (473)
+|..|+||||++.+||.+| |.. -++++|++|-.
T Consensus 106 vGLQGsGKTTt~~KLA~~lkk~~~kvllVaaD~~RpA 142 (451)
T COG0541 106 VGLQGSGKTTTAGKLAKYLKKKGKKVLLVAADTYRPA 142 (451)
T ss_pred EeccCCChHhHHHHHHHHHHHcCCceEEEecccCChH
Confidence 9999999999999999988 443 34588988853
No 61
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=98.12 E-value=3.8e-05 Score=80.86 Aligned_cols=98 Identities=15% Similarity=0.169 Sum_probs=65.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~ 168 (473)
|.+.|..+||.+..+.+|..++++.+...... ..+.+...+.+.+.+. +.....+.....|.+|+++|+
T Consensus 114 l~~~L~~~dv~~~~~~~i~~~~~~~~~~~~~~--~~~~v~~~l~~~l~~~---------i~~~~~~~~~~~~~vi~lvGp 182 (388)
T PRK12723 114 IEDILRENDFSESYIKDINEFIKKEFSLSDLD--DYDKVRDSVIIYIAKT---------IKCSGSIIDNLKKRVFILVGP 182 (388)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhhhhcC--CHHHHHHHHHHHHHHH---------hhccCccccCCCCeEEEEECC
Confidence 66889999999999999999998876543322 2344555544444331 110001111245789999999
Q ss_pred CCCcHHHHHHHHHHhcC-------C-CeEEcchhHHH
Q 011994 169 ACVGKSTIATQLAQRLN-------L-PNVLQTDMVYE 197 (473)
Q Consensus 169 ~GsGKSTlA~~LA~~Lg-------~-~~Vi~tD~ir~ 197 (473)
+|+||||++.+||.++. . ..++..|.+|.
T Consensus 183 tGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~ 219 (388)
T PRK12723 183 TGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRI 219 (388)
T ss_pred CCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccH
Confidence 99999999999998763 2 22457788764
No 62
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=98.11 E-value=1e-05 Score=86.09 Aligned_cols=102 Identities=19% Similarity=0.214 Sum_probs=71.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|.+.|.++||.+.++..+..++++.+.+..+. .++ .+.+...+++.|.+. .+.. ...+. ....+|.+|+++
T Consensus 33 i~~~Ll~aDV~~~~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~v~~eL~~~-l~~~-~~~~~-----~~~~~p~vi~~v 105 (428)
T TIGR00959 33 IRLALLEADVNLQVVKDFIKKVKEKALGQEVLKSLSPGQQFIKIVHEELVAI-LGGE-NASLN-----LAKKPPTVILMV 105 (428)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhccccccccCCcHHHHHHHHHHHHHHH-hCCC-Ccccc-----cCCCCCEEEEEE
Confidence 77899999999999999999999998876643 333 244555565555441 1111 00011 123568999999
Q ss_pred cCCCCcHHHHHHHHHHhc----CCC-eEEcchhHHH
Q 011994 167 GTACVGKSTIATQLAQRL----NLP-NVLQTDMVYE 197 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L----g~~-~Vi~tD~ir~ 197 (473)
|++|+||||++..||..+ |.. .++..|.+|.
T Consensus 106 G~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~R~ 141 (428)
T TIGR00959 106 GLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLYRP 141 (428)
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCCeEEEEeccccch
Confidence 999999999999999874 443 3457887764
No 63
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=98.11 E-value=1.3e-05 Score=72.67 Aligned_cols=81 Identities=30% Similarity=0.279 Sum_probs=52.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|+|+|.|||||||+|+.|+..+ |... ++..|.+++.+.... .|.. ++....+ ..
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d~~r~~l~~~~--------~~~~-----~~~~~~~--------~~ 59 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGDNVRHGLNKDL--------GFSR-----EDREENI--------RR 59 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCHHHHHhhhhcc--------CCCc-----chHHHHH--------HH
Confidence 47999999999999999999998 6553 357788988654321 1110 1111111 11
Q ss_pred HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
+...+...++.|..||+++++..+..
T Consensus 60 ~~~~a~~l~~~G~~VIid~~~~~~~~ 85 (149)
T cd02027 60 IAEVAKLLADAGLIVIAAFISPYRED 85 (149)
T ss_pred HHHHHHHHHhCCCEEEEccCCCCHHH
Confidence 22233345678999999999876554
No 64
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=98.10 E-value=1.1e-05 Score=86.10 Aligned_cols=101 Identities=17% Similarity=0.274 Sum_probs=69.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
+.+.|.++||++.++.++..++++.+.+..++ .++ ++.+...|++.|.+. ++... .. +.....|.+|+|+
T Consensus 30 i~~aLl~adV~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-l~~~~-~~------~~~~~~p~vI~lv 101 (437)
T PRK00771 30 IQRALLQADVNVKLVKELSKSIKERALEEEPPKGLTPREHVIKIVYEELVKL-LGEET-EP------LVLPLKPQTIMLV 101 (437)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhcccccccCCcHHHHHHHHHHHHHHH-hCCCc-cc------cccCCCCeEEEEE
Confidence 67889999999999999999999998876653 222 234455555554431 11110 00 0012468999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~ 197 (473)
|++|+||||++..||..+ |.. .++..|.+|.
T Consensus 102 G~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~R~ 136 (437)
T PRK00771 102 GLQGSGKTTTAAKLARYFKKKGLKVGLVAADTYRP 136 (437)
T ss_pred CCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCCCH
Confidence 999999999999999877 443 3346777654
No 65
>PRK08233 hypothetical protein; Provisional
Probab=98.09 E-value=7.3e-06 Score=74.42 Aligned_cols=38 Identities=21% Similarity=0.277 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
++++|+|.|+|||||||+|..|+..++...++..|.++
T Consensus 2 ~~~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~~~ 39 (182)
T PRK08233 2 KTKIITIAAVSGGGKTTLTERLTHKLKNSKALYFDRYD 39 (182)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhCCCCceEEECCEE
Confidence 35799999999999999999999999755555666554
No 66
>PRK13947 shikimate kinase; Provisional
Probab=98.08 E-value=1.7e-05 Score=71.91 Aligned_cols=36 Identities=28% Similarity=0.371 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.|+|.|+|||||||+|+.||++||+++| ..|.+.+.
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~i-d~d~~~~~ 38 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFI-DTDKEIEK 38 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEE-ECchhhhh
Confidence 4899999999999999999999999987 55555444
No 67
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=98.07 E-value=1.4e-05 Score=72.25 Aligned_cols=32 Identities=41% Similarity=0.531 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
|+|+|++||||||+|+.|+..+|..++ .+|.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v-~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI-EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE-eCccc
Confidence 578999999999999999999998875 56665
No 68
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=98.07 E-value=2.8e-05 Score=71.99 Aligned_cols=82 Identities=28% Similarity=0.302 Sum_probs=54.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~ 233 (473)
.+|.+|+|+|++|+||||+|+.|+..+ |.. .++..|.+++.|..... | ..++....+
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~~r~~l~~~~~------------~-~~~~~~~~~------ 76 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDNVRHGLNKDLG------------F-SEEDRKENI------ 76 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChHHHhhhccccC------------C-CHHHHHHHH------
Confidence 567899999999999999999999887 333 34578888876543111 1 111222222
Q ss_pred hHhHHHHHHHHHHhCCCcEEEEcccCC
Q 011994 234 VRKGLAGDLKKAMKDGKPIIIEGIHLD 260 (473)
Q Consensus 234 V~egL~~~IekaL~eG~sVIIEGvhL~ 260 (473)
..+.......+..|..||+++++..
T Consensus 77 --~~~~~~~~~~~~~G~~VI~d~~~~~ 101 (184)
T TIGR00455 77 --RRIGEVAKLFVRNGIIVITSFISPY 101 (184)
T ss_pred --HHHHHHHHHHHcCCCEEEEecCCCC
Confidence 1233344456789999999987554
No 69
>PRK08356 hypothetical protein; Provisional
Probab=98.06 E-value=1.4e-05 Score=75.20 Aligned_cols=41 Identities=24% Similarity=0.364 Sum_probs=34.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
.++|+|+|+|||||||+|..|+ .+|+.++..+|.++..++.
T Consensus 5 ~~~i~~~G~~gsGK~t~a~~l~-~~g~~~is~~~~~~~~~~~ 45 (195)
T PRK08356 5 KMIVGVVGKIAAGKTTVAKFFE-EKGFCRVSCSDPLIDLLTH 45 (195)
T ss_pred cEEEEEECCCCCCHHHHHHHHH-HCCCcEEeCCCcccccccc
Confidence 3689999999999999999996 5899988778877665443
No 70
>PRK05541 adenylylsulfate kinase; Provisional
Probab=98.03 E-value=1.2e-05 Score=73.89 Aligned_cols=43 Identities=40% Similarity=0.459 Sum_probs=34.7
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC----CeEEcchhHHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL----PNVLQTDMVYELL 199 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~----~~Vi~tD~ir~~L 199 (473)
..+|.+|+|+|++||||||+|+.|+.+++. ..++.+|.+++.+
T Consensus 4 ~~~~~~I~i~G~~GsGKst~a~~l~~~l~~~~~~~~~~~~d~~r~~~ 50 (176)
T PRK05541 4 KPNGYVIWITGLAGSGKTTIAKALYERLKLKYSNVIYLDGDELREIL 50 (176)
T ss_pred CCCCCEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEecHHHHhhc
Confidence 346889999999999999999999999851 2345678888754
No 71
>KOG0781 consensus Signal recognition particle receptor, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.01 E-value=3.5e-05 Score=82.85 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=75.3
Q ss_pred HHHHcCCChHHHHHHHHHHHHHHhhcCccccc--HHHHHHHHHHHHHhcCCChhhHHHHHH---HHHhhccCCCeEEEEE
Q 011994 92 MLTVTKIPNHVAIKIALELKKLLVDNSLLDVS--QSDLEANLFKLMERRGYGEEYISRYRM---MTRFHHQRVPLVILVC 166 (473)
Q Consensus 92 ~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~--~~eLe~~v~~lL~~~~yge~~a~rY~l---~~~~~~~~~P~iIlI~ 166 (473)
-|+.--|+++.|..++..+...|.++.+...+ ...+++++.+.|.+- .-+ ..+.+| +...++.++|.+|.|+
T Consensus 308 hLitKNVA~eiA~~LcEsV~a~Legkkv~sfs~V~~Tvk~Al~daLvQI-LTP--~~sVDlLRdI~sar~~krPYVi~fv 384 (587)
T KOG0781|consen 308 HLITKNVAAEIAEKLCESVAASLEGKKVGSFSTVESTVKEALRDALVQI-LTP--QRSVDLLRDIMSARRRKRPYVISFV 384 (587)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHHHHHH-cCC--CchhhHHHHHHHHHhcCCCeEEEEE
Confidence 35556889999999999999999999887665 444555555554442 111 012334 3344567789999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPNVL-QTDMVYEL 198 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~ 198 (473)
|.+|+||||--.++|.-| ++.+++ +.|++|..
T Consensus 385 GVNGVGKSTNLAKIayWLlqNkfrVLIAACDTFRsG 420 (587)
T KOG0781|consen 385 GVNGVGKSTNLAKIAYWLLQNKFRVLIAACDTFRSG 420 (587)
T ss_pred eecCccccchHHHHHHHHHhCCceEEEEeccchhhh
Confidence 999999999999999988 677665 46999853
No 72
>PRK13949 shikimate kinase; Provisional
Probab=97.99 E-value=2.2e-05 Score=72.97 Aligned_cols=35 Identities=31% Similarity=0.486 Sum_probs=30.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
.|+|.|+|||||||+++.||..+|++++ .+|.+.+
T Consensus 3 ~I~liG~~GsGKstl~~~La~~l~~~~i-d~D~~i~ 37 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARELGLSFI-DLDFFIE 37 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCCee-cccHHHH
Confidence 5899999999999999999999999986 5655443
No 73
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.97 E-value=2.3e-05 Score=73.13 Aligned_cols=42 Identities=31% Similarity=0.411 Sum_probs=33.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~Lr 200 (473)
+|.+|+|+|.|||||||+|+.|..+| |... ++..|.+|+.+.
T Consensus 1 ~g~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR~~l~ 46 (156)
T PF01583_consen 1 KGFVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLRHGLN 46 (156)
T ss_dssp S-EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHCTTTT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchhhccC
Confidence 47899999999999999999999998 5554 456788887643
No 74
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.96 E-value=2.3e-05 Score=82.44 Aligned_cols=100 Identities=20% Similarity=0.272 Sum_probs=73.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCc------ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSL------LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV 162 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v------~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~i 162 (473)
+.+.|.++||.+....++...+++.+...+. ..+.+..+.+.+..++.. +-.+ |. ...++|-+
T Consensus 35 I~~ALLesDV~~~lV~~l~~nir~~i~~~~~~~G~nk~r~i~~~vf~eL~kl~dp-~~~~-----~~-----~~K~kpsV 103 (483)
T KOG0780|consen 35 ICRALLESDVNPRLVKELRENIRKIINLEKLASGVNKRRIIQKAVFDELVKLLDP-GKSA-----LQ-----PKKGKPSV 103 (483)
T ss_pred HHHHHHhccCCHHHHHHHHHHHHHHhchhhhccccCHHHHHHHHHHHHHHHHhCC-CCcc-----cc-----cccCCCcE
Confidence 6788999999999999999999988765544 244455555555555533 1111 11 24568999
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHHHHH
Q 011994 163 ILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVYELL 199 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir~~L 199 (473)
|+|+|.+|+||||.+.+||.++ |+.. ++..|++|...
T Consensus 104 imfVGLqG~GKTTtc~KlA~y~kkkG~K~~LvcaDTFRagA 144 (483)
T KOG0780|consen 104 IMFVGLQGSGKTTTCTKLAYYYKKKGYKVALVCADTFRAGA 144 (483)
T ss_pred EEEEeccCCCcceeHHHHHHHHHhcCCceeEEeecccccch
Confidence 9999999999999999999988 5543 34789998754
No 75
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.96 E-value=5e-05 Score=67.17 Aligned_cols=35 Identities=37% Similarity=0.520 Sum_probs=30.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
|+|+|+|||||||+|+.||..+|++++ ..|.+.+.
T Consensus 2 i~l~G~~GsGKstla~~la~~l~~~~~-~~d~~~~~ 36 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKALGLPFV-DLDELIEQ 36 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHHhCCCEE-EchHHHHH
Confidence 789999999999999999999999986 55555443
No 76
>PLN02748 tRNA dimethylallyltransferase
Probab=97.95 E-value=1e-05 Score=86.97 Aligned_cols=102 Identities=22% Similarity=0.286 Sum_probs=61.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCC----CCCccccccc--cChHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPL----SSSPVWARNF--SSSEELVTEFVR 229 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL----~~~~~W~~~y--~s~EelI~gf~~ 229 (473)
+++.+|+|+|++|||||+||..||.+++... ++.|. +++.|.-.+..+- ...+.+.-.+ +...-.+..|..
T Consensus 20 ~~~~~i~i~GptgsGKs~la~~la~~~~~ei-i~~DsmQVYrgLdIgTaKpt~eE~~~VpHHLid~v~p~e~ysv~~F~~ 98 (468)
T PLN02748 20 GKAKVVVVMGPTGSGKSKLAVDLASHFPVEI-INADSMQVYSGLDVLTNKVPLHEQKGVPHHLLGVISPSVEFTAKDFRD 98 (468)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCeeE-EcCchheeeCCcchhcCCCCHHHHcCCCCeeEeecCCCCcCcHHHHHH
Confidence 4567999999999999999999999999885 58885 5555432111110 0011111111 111223556666
Q ss_pred cchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccc
Q 011994 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLM 266 (473)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~ 266 (473)
.+..+++.+.. +...||||.|+++.-.-++.
T Consensus 99 ~A~~~I~~I~~------rgk~PIlVGGTglYi~aLl~ 129 (468)
T PLN02748 99 HAVPLIEEILS------RNGLPVIVGGTNYYIQALVS 129 (468)
T ss_pred HHHHHHHHHHh------cCCCeEEEcChHHHHHHHHc
Confidence 55444433322 34568999999987666554
No 77
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.91 E-value=6.2e-06 Score=78.14 Aligned_cols=38 Identities=34% Similarity=0.427 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+.|+++|++|+||||+++.||+.||++++..+..+.+.
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D~~Ie~~ 40 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTDQEIEKR 40 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccchHHHHHH
Confidence 46899999999999999999999999997554455554
No 78
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=97.89 E-value=5.6e-05 Score=71.56 Aligned_cols=95 Identities=22% Similarity=0.359 Sum_probs=51.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~ 239 (473)
.||++-|+|.|||||+|+.|...+.-+++ ++-|.+++.|......+. ..-.|....+..+... ..++.+..
T Consensus 2 ~iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~~~~~~~~~~-~g~~~~~~~~~~~~~~-------~~~~~~~~ 73 (174)
T PF07931_consen 2 QIIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDMMPPGRYRPG-DGLEPAGDRPDGGPLF-------RRLYAAMH 73 (174)
T ss_dssp -EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHHS-GGGGTST-TSEEEETTSEEE-HHH-------HHHHHHHH
T ss_pred eEEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhhcCcccccCC-ccccccccCCchhHHH-------HHHHHHHH
Confidence 48999999999999999999999988754 467999887653211100 0111221111111111 12223344
Q ss_pred HHHHHHHhCCCcEEEEcccCCccc
Q 011994 240 GDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 240 ~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
..+....+.|..||+|.+++.|..
T Consensus 74 ~~iaa~a~aG~~VIvD~v~~~~~~ 97 (174)
T PF07931_consen 74 AAIAAMARAGNNVIVDDVFLGPRW 97 (174)
T ss_dssp HHHHHHHHTT-EEEEEE--TTTHH
T ss_pred HHHHHHHhCCCCEEEecCccCcHH
Confidence 445555677777777777776653
No 79
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.89 E-value=7e-05 Score=71.90 Aligned_cols=45 Identities=33% Similarity=0.344 Sum_probs=38.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CC-CeEEcchhHHHHHhh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NL-PNVLQTDMVYELLRT 201 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~-~~Vi~tD~ir~~Lr~ 201 (473)
..+|.+|+|+|.||+||||+|..|.++| |+ .+++-+|.+|+.|..
T Consensus 20 ~~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR~gL~~ 68 (197)
T COG0529 20 GQKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVRHGLNR 68 (197)
T ss_pred CCCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHhhcccC
Confidence 4568999999999999999999999988 55 455678999998764
No 80
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.87 E-value=3.5e-05 Score=72.73 Aligned_cols=83 Identities=29% Similarity=0.456 Sum_probs=59.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH----HHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY----ELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVR 235 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir----~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~ 235 (473)
+-+|+++|++||||||++..|+.+||++++..+|+.- +.|+. +.||.+.+.|. | .
T Consensus 12 k~~i~vmGvsGsGKSTigk~L~~~l~~~F~dgDd~Hp~~NveKM~~--GipLnD~DR~p------------W-------L 70 (191)
T KOG3354|consen 12 KYVIVVMGVSGSGKSTIGKALSEELGLKFIDGDDLHPPANVEKMTQ--GIPLNDDDRWP------------W-------L 70 (191)
T ss_pred ceeEEEEecCCCChhhHHHHHHHHhCCcccccccCCCHHHHHHHhc--CCCCCcccccH------------H-------H
Confidence 4589999999999999999999999999987666543 33433 34554443331 1 1
Q ss_pred hHHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 236 KGLAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 236 egL~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
..+...+.+.+..|+-+|+-+.-|.-.+
T Consensus 71 ~~i~~~~~~~l~~~q~vVlACSaLKk~Y 98 (191)
T KOG3354|consen 71 KKIAVELRKALASGQGVVLACSALKKKY 98 (191)
T ss_pred HHHHHHHHHHhhcCCeEEEEhHHHHHHH
Confidence 2355566677778999999888876655
No 81
>PRK05537 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Validated
Probab=97.87 E-value=9.3e-05 Score=81.35 Aligned_cols=44 Identities=30% Similarity=0.392 Sum_probs=37.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC-----CeEEcchhHHHHHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL-----PNVLQTDMVYELLR 200 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~-----~~Vi~tD~ir~~Lr 200 (473)
.++|.+|+|+|.+||||||+|+.|+.+|+. ..++.+|.+|+.|.
T Consensus 389 ~~~g~~Ivl~Gl~GSGKSTia~~La~~L~~~~g~~~~~lD~D~vr~~l~ 437 (568)
T PRK05537 389 HKQGFTVFFTGLSGAGKSTIAKALMVKLMEMRGRPVTLLDGDVVRKHLS 437 (568)
T ss_pred cCCCeEEEEECCCCChHHHHHHHHHHHhhhccCceEEEeCCcHHHHhcc
Confidence 346889999999999999999999999986 24568899988664
No 82
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=97.86 E-value=9.1e-05 Score=71.88 Aligned_cols=39 Identities=26% Similarity=0.406 Sum_probs=33.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+++|.|.|++||||||+++.|+.++|+.++..++.+|..
T Consensus 2 ~~~i~i~G~~GsGKst~~~~la~~~~~~~~~~g~~~r~~ 40 (217)
T TIGR00017 2 AMIIAIDGPSGAGKSTVAKAVAEKLGYAYLDSGAMYRAI 40 (217)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCceeeCchHHHHH
Confidence 578999999999999999999999999987655565543
No 83
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.86 E-value=8.6e-05 Score=67.61 Aligned_cols=38 Identities=29% Similarity=0.360 Sum_probs=32.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.|+|+|++||||||+|+.||.++|++++ ..|.+.+...
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~-d~D~~~~~~~ 41 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFV-DTDQWLQSTS 41 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEE-EccHHHHHHh
Confidence 5788999999999999999999999986 6777666543
No 84
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.83 E-value=5.7e-05 Score=64.07 Aligned_cols=22 Identities=50% Similarity=0.681 Sum_probs=21.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011994 163 ILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~L 184 (473)
|+|+|++||||||+|+.|++++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 7899999999999999999998
No 85
>PRK06547 hypothetical protein; Provisional
Probab=97.78 E-value=3.6e-05 Score=72.18 Aligned_cols=39 Identities=31% Similarity=0.409 Sum_probs=33.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
...|++|+|.|++||||||+|..|++.+++.++ +.|.++
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~-~~d~~~ 50 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAARTGFQLV-HLDDLY 50 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHhCCCee-ccccee
Confidence 466889999999999999999999999999875 555554
No 86
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.78 E-value=0.00015 Score=67.39 Aligned_cols=38 Identities=39% Similarity=0.439 Sum_probs=31.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+..|+|.|++|+||||+++.||..+|++++ .+|...+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~v-d~D~~i~~ 41 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIEK 41 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEE-ECCchHHH
Confidence 457999999999999999999999999986 55654443
No 87
>COG4639 Predicted kinase [General function prediction only]
Probab=97.76 E-value=9.8e-05 Score=69.51 Aligned_cols=83 Identities=27% Similarity=0.251 Sum_probs=57.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLA 239 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~ 239 (473)
+.+++++|+|||||||+|+.. -+... +++.|.+|..+....+...+ ... .+.+.+.+.
T Consensus 2 ~~LvvL~G~~~sGKsT~ak~n--~~~~~-~lsld~~r~~lg~~~~~e~s-qk~------------------~~~~~~~l~ 59 (168)
T COG4639 2 RILVVLRGASGSGKSTFAKEN--FLQNY-VLSLDDLRLLLGVSASKENS-QKN------------------DELVWDILY 59 (168)
T ss_pred ceEEEEecCCCCchhHHHHHh--CCCcc-eecHHHHHHHhhhchhhhhc-ccc------------------HHHHHHHHH
Confidence 468999999999999999854 23444 56878888865321111110 011 112445667
Q ss_pred HHHHHHHhCCCcEEEEcccCCcccc
Q 011994 240 GDLKKAMKDGKPIIIEGIHLDPSIY 264 (473)
Q Consensus 240 ~~IekaL~eG~sVIIEGvhL~Pel~ 264 (473)
..++..|+.|+..|||++++.|+.-
T Consensus 60 ~~l~qrl~~Gk~tiidAtn~rr~~r 84 (168)
T COG4639 60 KQLEQRLRRGKFTIIDATNLRREDR 84 (168)
T ss_pred HHHHHHHHcCCeEEEEcccCCHHHH
Confidence 7888899999999999999999764
No 88
>PRK00889 adenylylsulfate kinase; Provisional
Probab=97.76 E-value=9.9e-05 Score=67.70 Aligned_cols=42 Identities=36% Similarity=0.491 Sum_probs=33.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr 200 (473)
++.+|+|+|+||+||||+|+.|+..+ |.. .++.+|.+++.+.
T Consensus 3 ~g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D~~~~~~~ 48 (175)
T PRK00889 3 RGVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGDAVRTNLS 48 (175)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCccHHHHHh
Confidence 45699999999999999999999988 322 2357888887654
No 89
>PRK06696 uridine kinase; Validated
Probab=97.70 E-value=4.8e-05 Score=73.11 Aligned_cols=40 Identities=28% Similarity=0.398 Sum_probs=32.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY 196 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir 196 (473)
...|.+|.|.|++||||||+|..|+..| |.+++. +.|.++
T Consensus 19 ~~~~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 19 LTRPLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4578999999999999999999999999 666553 455554
No 90
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.69 E-value=3.7e-05 Score=73.25 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=33.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
++|+|+|+||+||||++.+|+ .+|+.++...|++++.
T Consensus 1 m~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~el~~e~ 37 (180)
T COG1936 1 MLIAITGTPGVGKTTVCKLLR-ELGYKVIELNELAKEN 37 (180)
T ss_pred CeEEEeCCCCCchHHHHHHHH-HhCCceeeHHHHHHhc
Confidence 479999999999999999999 9999998878888764
No 91
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.68 E-value=0.00014 Score=72.95 Aligned_cols=93 Identities=20% Similarity=0.154 Sum_probs=57.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
-|-+.|...|++...+.+|..+++.. ...+.+...+.+.|.+. +.. . .........+.+|+|+|
T Consensus 138 ~l~~~L~~~gv~~~la~~L~~~l~~~--------~~~~~~~~~~~~~l~~~-l~~------~-~~~~~~~~~~~vi~~vG 201 (282)
T TIGR03499 138 KLLERLLRAGVSPELARELLEKLPER--------ADAEDAWRWLREALEKM-LPV------K-PEEDEILEQGGVIALVG 201 (282)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHhhcc--------CCHHHHHHHHHHHHHHH-hcc------C-CccccccCCCeEEEEEC
Confidence 45577888888888888888877642 12233444455544431 100 0 00000123567999999
Q ss_pred CCCCcHHHHHHHHHHhc----C-CC-eEEcchhHH
Q 011994 168 TACVGKSTIATQLAQRL----N-LP-NVLQTDMVY 196 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L----g-~~-~Vi~tD~ir 196 (473)
++|+||||++..||..+ | .. .++..|..|
T Consensus 202 ptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r 236 (282)
T TIGR03499 202 PTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYR 236 (282)
T ss_pred CCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccc
Confidence 99999999999999876 3 33 234667654
No 92
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.68 E-value=0.00021 Score=76.06 Aligned_cols=104 Identities=16% Similarity=0.191 Sum_probs=72.4
Q ss_pred ccccchHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCC
Q 011994 80 HYYVFSRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRV 159 (473)
Q Consensus 80 h~ypFSRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~ 159 (473)
..+|+--.-+.+.|...||.+..+.+|...+...+...+ .++..++...+.+.+... + ... .. ....
T Consensus 174 ~~~~~~~~~i~~~L~~~dV~~~~~~~ll~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~-l--------~~~-~~-~~~~ 240 (436)
T PRK11889 174 ESVPFIIQKVIRMLEQNDVEQYFIHAYAEKLKVKFENAT--MITEEEVIEYILEDMRSH-F--------NTE-NV-FEKE 240 (436)
T ss_pred cccchHHHHHHHHHHHCCCCHHHHHHHHHHHHhhhcccc--cCCHHHHHHHHHHHHHHH-h--------ccc-cc-cccC
Confidence 456766667889999999999999999998886554432 334456666666655432 1 100 00 1235
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir 196 (473)
|.+|+|+|++|+||||++..||..+ |... ++.+|..|
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~R 281 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSR 281 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcc
Confidence 7899999999999999999999877 3332 45778776
No 93
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.67 E-value=0.00051 Score=69.76 Aligned_cols=41 Identities=32% Similarity=0.324 Sum_probs=34.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
..++..|+|+|++||||||+++.||.+||+++| ..|...+.
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~i-d~D~~i~~ 170 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFV-ELNREIER 170 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEE-eHHHHHHH
Confidence 445679999999999999999999999999987 55544443
No 94
>PLN02840 tRNA dimethylallyltransferase
Probab=97.65 E-value=6.3e-05 Score=80.09 Aligned_cols=104 Identities=27% Similarity=0.397 Sum_probs=59.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCC----CCCccccccc--cChHHHHHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPL----SSSPVWARNF--SSSEELVTEFV 228 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL----~~~~~W~~~y--~s~EelI~gf~ 228 (473)
..++.+|+|+|++||||||+|..||.+++... ++.|. ++..|.-....|. ...+.+.-++ +..+--+..|.
T Consensus 18 ~~~~~vi~I~GptgsGKTtla~~La~~~~~~i-is~Ds~qvYr~~~IgTaKpt~eE~~~V~Hhlidil~p~e~ySv~~F~ 96 (421)
T PLN02840 18 TKKEKVIVISGPTGAGKSRLALELAKRLNGEI-ISADSVQVYRGLDVGSAKPSLSERKEVPHHLIDILHPSDDYSVGAFF 96 (421)
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHCCCCe-EeccccceecceeEEcCCCCHHHHcCCCeEeEeecCCCCceeHHHHH
Confidence 34566899999999999999999999999875 46675 3444432111111 0011111111 11112244554
Q ss_pred hcchhhHhHHHHHHHHHHhCC-CcEEEEcccCCcccccccc
Q 011994 229 RECRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMDD 268 (473)
Q Consensus 229 ~q~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~~ 268 (473)
..+.. .++.....| .|||+.|+++.-.-++.+.
T Consensus 97 ~~A~~-------~I~~i~~rgkiPIvVGGTGlYl~aLl~G~ 130 (421)
T PLN02840 97 DDARR-------ATQDILNRGRVPIVAGGTGLYLRWYIYGK 130 (421)
T ss_pred HHHHH-------HHHHHHhcCCCEEEEcCccHHHHHHhcCC
Confidence 44333 333334455 5799999998776665543
No 95
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.63 E-value=0.00019 Score=73.49 Aligned_cols=41 Identities=37% Similarity=0.573 Sum_probs=34.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr 200 (473)
+|.+|+|+|++|||||++|..||+.++... ++.|. ++..|.
T Consensus 3 ~~~~i~i~GptgsGKt~la~~la~~~~~~i-is~Ds~Qvy~~l~ 45 (307)
T PRK00091 3 KPKVIVIVGPTASGKTALAIELAKRLNGEI-ISADSMQVYRGMD 45 (307)
T ss_pred CceEEEEECCCCcCHHHHHHHHHHhCCCcE-Eeccccceeeccc
Confidence 467999999999999999999999999875 57777 455544
No 96
>PRK05506 bifunctional sulfate adenylyltransferase subunit 1/adenylylsulfate kinase protein; Provisional
Probab=97.62 E-value=0.00013 Score=80.70 Aligned_cols=82 Identities=26% Similarity=0.271 Sum_probs=54.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIV 234 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V 234 (473)
+|.+|+++|.|||||||+|+.|+.+|+ .. .++..|.+|+.+... . .| +.++....|.
T Consensus 459 ~~~~i~~~G~~gsGKst~a~~l~~~l~~~~~~~~~l~~D~~r~~l~~~----~--------~~-~~~~r~~~~~------ 519 (632)
T PRK05506 459 KPATVWFTGLSGSGKSTIANLVERRLHALGRHTYLLDGDNVRHGLNRD----L--------GF-SDADRVENIR------ 519 (632)
T ss_pred CcEEEEecCCCCchHHHHHHHHHHHHHHcCCCEEEEcChhhhhccCCC----C--------CC-CHHHHHHHHH------
Confidence 589999999999999999999999973 32 446889999865321 1 01 1222333332
Q ss_pred HhHHHHHHHHHHhCCCcEEEEcccCCc
Q 011994 235 RKGLAGDLKKAMKDGKPIIIEGIHLDP 261 (473)
Q Consensus 235 ~egL~~~IekaL~eG~sVIIEGvhL~P 261 (473)
.+.......+..|..||++++++..
T Consensus 520 --~l~~~a~~~~~~G~~Vivda~~~~~ 544 (632)
T PRK05506 520 --RVAEVARLMADAGLIVLVSFISPFR 544 (632)
T ss_pred --HHHHHHHHHHhCCCEEEEECCCCCH
Confidence 2333444456889999999865443
No 97
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=97.62 E-value=4.8e-05 Score=70.94 Aligned_cols=30 Identities=23% Similarity=0.338 Sum_probs=25.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+|+|.|++||||||+++.|+..++..+++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~~ 32 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLLV 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEEE
Confidence 478999999999999999999888765443
No 98
>PLN02199 shikimate kinase
Probab=97.62 E-value=0.00041 Score=71.13 Aligned_cols=41 Identities=12% Similarity=0.189 Sum_probs=32.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
...|+|.|.+||||||+++.||..+|+++|..++.+.+.+.
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD~lIe~~~~ 142 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCDTLIEQAMN 142 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehHHHHHHHhc
Confidence 34789999999999999999999999998744444555433
No 99
>PLN02165 adenylate isopentenyltransferase
Probab=97.61 E-value=0.00013 Score=75.73 Aligned_cols=37 Identities=24% Similarity=0.379 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.+..+|+|.|++||||||+|..||..+|... ++.|.+
T Consensus 41 ~~g~iivIiGPTGSGKStLA~~LA~~l~~eI-IsaDs~ 77 (334)
T PLN02165 41 CKDKVVVIMGATGSGKSRLSVDLATRFPSEI-INSDKM 77 (334)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHHHcCCce-ecCChh
Confidence 3455899999999999999999999999875 477766
No 100
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.53 E-value=8.2e-05 Score=63.33 Aligned_cols=27 Identities=44% Similarity=0.660 Sum_probs=25.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
|+|.|+||+||||+++.||..++.+++
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~ 27 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFI 27 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEE
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccc
Confidence 689999999999999999999998764
No 101
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.50 E-value=0.00012 Score=68.03 Aligned_cols=38 Identities=29% Similarity=0.420 Sum_probs=31.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|.|+|.+||||||++..|++ +|++++..++.+++.+.
T Consensus 1 ii~itG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 38 (179)
T cd02022 1 IIGLTGGIGSGKSTVAKLLKE-LGIPVIDADKIAHEVYE 38 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHH-CCCCEEecCHHHHhhhh
Confidence 489999999999999999998 99998755555555543
No 102
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=97.47 E-value=0.00023 Score=65.10 Aligned_cols=28 Identities=32% Similarity=0.439 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
.+|+|.|++||||||++..|+..++...
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~~~~~ 29 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEEDPNLK 29 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccCcccc
Confidence 3799999999999999999998775433
No 103
>PRK13973 thymidylate kinase; Provisional
Probab=97.46 E-value=0.00083 Score=64.34 Aligned_cols=86 Identities=17% Similarity=0.198 Sum_probs=52.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFV 228 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~ 228 (473)
.+.|.|-|..||||||++..|++.| |+.++.. .+.+|+.+...... .+ ++.....-|.
T Consensus 3 g~~IviEG~dGsGKtTq~~~l~~~l~~~g~~~~~~~~p~~~~~g~~ir~~l~~~~~~----------~~-~~~~~~ll~~ 71 (213)
T PRK13973 3 GRFITFEGGEGAGKSTQIRLLAERLRAAGYDVLVTREPGGSPGAEAIRHVLLSGAAE----------LY-GPRMEALLFA 71 (213)
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEECCCCCchHHHHHHHHcCCCcc----------CC-CHHHHHHHHH
Confidence 4689999999999999999999999 8876643 45566554331110 01 0111111121
Q ss_pred hcchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994 229 RECRIVRKGLAGDLKKAMKDGKPIIIEGIHL 259 (473)
Q Consensus 229 ~q~~~V~egL~~~IekaL~eG~sVIIEGvhL 259 (473)
. .-.+-+...+..++..|..||.|....
T Consensus 72 a---~r~~~~~~~i~~~l~~g~~Vi~DRy~~ 99 (213)
T PRK13973 72 A---ARDDHVEEVIRPALARGKIVLCDRFID 99 (213)
T ss_pred H---HHHHHHHHHHHHHHHCCCEEEEcchhh
Confidence 1 111223455778899999899888543
No 104
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.45 E-value=0.00033 Score=70.37 Aligned_cols=79 Identities=24% Similarity=0.438 Sum_probs=42.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|+|+|.|||||||+|..|+..+ +...++ +.|.+. . ... . |.. ...+..+ ...
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~-~-~~~--------~-y~~--~~~Ek~~----------R~~ 59 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLG-I-DRN--------D-YAD--SKKEKEA----------RGS 59 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH---TTS--------S-S----GGGHHHH----------HHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccc-c-chh--------h-hhc--hhhhHHH----------HHH
Confidence 68999999999999999999986 455443 444444 1 110 0 111 0112222 233
Q ss_pred HHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
+...+++.+....-||+|+.+...++
T Consensus 60 l~s~v~r~ls~~~iVI~Dd~nYiKg~ 85 (270)
T PF08433_consen 60 LKSAVERALSKDTIVILDDNNYIKGM 85 (270)
T ss_dssp HHHHHHHHHTT-SEEEE-S---SHHH
T ss_pred HHHHHHHhhccCeEEEEeCCchHHHH
Confidence 56677788888888999999966544
No 105
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.44 E-value=0.00037 Score=74.14 Aligned_cols=93 Identities=18% Similarity=0.171 Sum_probs=57.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcC
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGT 168 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~ 168 (473)
|.+.|...||++..|.+|..++......... .+...+.+.|.+. +... ...+ + ....+|+|.|+
T Consensus 166 ~~~~L~~~gv~~~~~~~l~~~~~~~~~~~~~------~~~~~~~~~L~~~-l~~~---~~~~---~---~~~~~i~~vGp 229 (424)
T PRK05703 166 LYKRLKRSGLSPEIAEKLLKLLLEHMPPRER------TAWRYLLELLANM-IPVR---VEDI---L---KQGGVVALVGP 229 (424)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhhhHH------HHHHHHHHHHHHH-hCcc---cccc---c---cCCcEEEEECC
Confidence 5578889999999999999988776543221 2344444444331 1000 0011 1 12358999999
Q ss_pred CCCcHHHHHHHHHHhc-----CCC-eEEcchhHHH
Q 011994 169 ACVGKSTIATQLAQRL-----NLP-NVLQTDMVYE 197 (473)
Q Consensus 169 ~GsGKSTlA~~LA~~L-----g~~-~Vi~tD~ir~ 197 (473)
+|+||||++..||.++ |.. .++..|..|-
T Consensus 230 tGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~ 264 (424)
T PRK05703 230 TGVGKTTTLAKLAARYALLYGKKKVALITLDTYRI 264 (424)
T ss_pred CCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHH
Confidence 9999999999998765 222 2346777653
No 106
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.44 E-value=0.00018 Score=68.44 Aligned_cols=40 Identities=30% Similarity=0.268 Sum_probs=32.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
++|.|+|++||||||++..|+..+|++++..++..++.+.
T Consensus 2 ~~i~itG~~gsGKst~~~~l~~~~g~~~i~~D~~~~~~~~ 41 (195)
T PRK14730 2 RRIGLTGGIASGKSTVGNYLAQQKGIPILDADIYAREALA 41 (195)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCeEeeCcHHHHHHHh
Confidence 4799999999999999999999889998754445455443
No 107
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.43 E-value=0.00058 Score=64.41 Aligned_cols=43 Identities=30% Similarity=0.343 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYELLR 200 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~Lr 200 (473)
.+|.+|+|+|.+||||||+|+.|+..+ |.. .++..|.+++.+.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~~~~~~ 68 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNVRHGLC 68 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeHHhhhh
Confidence 468899999999999999999999987 332 3446788886544
No 108
>PLN02842 nucleotide kinase
Probab=97.42 E-value=0.00041 Score=75.51 Aligned_cols=37 Identities=16% Similarity=0.374 Sum_probs=33.3
Q ss_pred EEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 164 LVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 164 lI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
||.|+|||||||+|+.|++++|+.++..+|.++..+.
T Consensus 1 ~I~G~PGSGKSTqa~~Lak~lg~~hIs~gdLLR~ev~ 37 (505)
T PLN02842 1 MISGAPASGKGTQCELIVHKFGLVHISTGDLLRAEVS 37 (505)
T ss_pred CeeCCCCCCHHHHHHHHHHHhCCCEEEccHHHHHHhc
Confidence 5899999999999999999999999877888887653
No 109
>PRK00023 cmk cytidylate kinase; Provisional
Probab=97.42 E-value=0.00017 Score=70.21 Aligned_cols=38 Identities=32% Similarity=0.387 Sum_probs=33.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+++|.|.|++||||||+|+.||+++|++++..++.+|.
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~~~~~~~~~~~~r~ 41 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKLGFHYLDTGAMYRA 41 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCCcccCchhHHH
Confidence 57999999999999999999999999999866666665
No 110
>COG3265 GntK Gluconate kinase [Carbohydrate transport and metabolism]
Probab=97.42 E-value=0.00031 Score=65.80 Aligned_cols=46 Identities=28% Similarity=0.367 Sum_probs=33.0
Q ss_pred EcCCCCcHHHHHHHHHHhcCCCeEEcchhH-HHHHh-hCCCCCCCCCc
Q 011994 166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV-YELLR-TSTDAPLSSSP 211 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i-r~~Lr-~~~s~pL~~~~ 211 (473)
+|.+||||||++..||.+||+.++..+|+. ++... +..+.||.+..
T Consensus 1 MGVsG~GKStvg~~lA~~lg~~fidGDdlHp~aNi~KM~~GiPL~DdD 48 (161)
T COG3265 1 MGVSGSGKSTVGSALAERLGAKFIDGDDLHPPANIEKMSAGIPLNDDD 48 (161)
T ss_pred CCCCccCHHHHHHHHHHHcCCceecccccCCHHHHHHHhCCCCCCcch
Confidence 599999999999999999999997666544 23322 23345665443
No 111
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=97.41 E-value=0.00023 Score=67.36 Aligned_cols=40 Identities=30% Similarity=0.397 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+.+|.|+|++||||||++..|+. +|++++..++.+++.+.
T Consensus 2 ~~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D~~~~~~~~ 41 (194)
T PRK00081 2 MLIIGLTGGIGSGKSTVANLFAE-LGAPVIDADAIAHEVVE 41 (194)
T ss_pred CeEEEEECCCCCCHHHHHHHHHH-cCCEEEEecHHHHHHhh
Confidence 46899999999999999999998 99997655555555543
No 112
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.41 E-value=0.00055 Score=74.17 Aligned_cols=80 Identities=15% Similarity=0.084 Sum_probs=51.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC 166 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~ 166 (473)
-|...|..+||.+..|.+|...++..... ++..+.+...|.+. +....... ...++.+|+|+
T Consensus 200 ~l~~~Ll~~dv~~~la~~l~~~l~~~~~~--------~~~~~~l~~~l~~~---------l~~~~~~~~~~~~g~Vi~Lv 262 (484)
T PRK06995 200 ALLKHLLAAGFSAQLVRMLVDNLPEGDDA--------EAALDWVQSALAKN---------LPVLDSEDALLDRGGVFALM 262 (484)
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHhhhch--------hHHHHHHHHHHHHH---------HhhccCccccccCCcEEEEE
Confidence 35577888999999999999888766322 12333333333321 11100000 11245799999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 011994 167 GTACVGKSTIATQLAQRL 184 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L 184 (473)
|++|+||||++.+||..+
T Consensus 263 GpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 263 GPTGVGKTTTTAKLAARC 280 (484)
T ss_pred CCCCccHHHHHHHHHHHH
Confidence 999999999999999766
No 113
>PRK14729 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Provisional
Probab=97.41 E-value=0.00031 Score=71.87 Aligned_cols=100 Identities=16% Similarity=0.197 Sum_probs=55.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH--HHHhhCCCCCC----CCCcccccccc--ChHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY--ELLRTSTDAPL----SSSPVWARNFS--SSEELVTEFVRE 230 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir--~~Lr~~~s~pL----~~~~~W~~~y~--s~EelI~gf~~q 230 (473)
.+.+|+|+||.|||||.||-.||.+.| -|++.|.+. +.|.-.+..|- ...+.+.-++- ...--+..|...
T Consensus 3 ~~~ii~I~GpTasGKS~LAl~LA~~~~--eIIsaDS~QvYr~ldIgTaKpt~eE~~~i~Hhlid~~~p~e~~sv~~f~~~ 80 (300)
T PRK14729 3 ENKIVFIFGPTAVGKSNILFHFPKGKA--EIINVDSIQVYKEFDIASCKPSKELRKHIKHHLVDFLEPIKEYNLGIFYKE 80 (300)
T ss_pred CCcEEEEECCCccCHHHHHHHHHHhCC--cEEeccHHHHHCCCceecCCCCHHHHcCCCeeeeeccCCCCceeHHHHHHH
Confidence 345899999999999999999999943 567888764 33321111111 00111110111 111123445443
Q ss_pred chhhHhHHHHHHHHHHhCC-CcEEEEcccCCccccccc
Q 011994 231 CRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMD 267 (473)
Q Consensus 231 ~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~ 267 (473)
+.. .|+.....| .|||+.|+++.-.-++.+
T Consensus 81 a~~-------~i~~i~~~gk~PilvGGTglYi~all~g 111 (300)
T PRK14729 81 ALK-------IIKELRQQKKIPIFVGGSAFYFKHLKYG 111 (300)
T ss_pred HHH-------HHHHHHHCCCCEEEEeCchHHHHHHHcC
Confidence 332 233333445 579999999876665543
No 114
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=97.40 E-value=0.00061 Score=70.03 Aligned_cols=102 Identities=25% Similarity=0.356 Sum_probs=60.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhhCCCCCCC----CCccccccccCh--HHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTSTDAPLS----SSPVWARNFSSS--EELVTEFVRE 230 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~Lr~~~s~pL~----~~~~W~~~y~s~--EelI~gf~~q 230 (473)
.|.+|+|+||.|||||-+|-.||+++|... ++.|.+ ++.|.-.+..|.. ..+...-++-++ .--+..|..+
T Consensus 2 ~~~~i~I~GPTAsGKT~lai~LAk~~~~eI-Is~DSmQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~ysa~~f~~~ 80 (308)
T COG0324 2 KPKLIVIAGPTASGKTALAIALAKRLGGEI-ISLDSMQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESYSAAEFQRD 80 (308)
T ss_pred CccEEEEECCCCcCHHHHHHHHHHHcCCcE-EecchhhhcCCCcccCCCCCHHHHcCCCEEEecccCccccccHHHHHHH
Confidence 467999999999999999999999999985 588866 3444322222210 111110011001 1123344332
Q ss_pred chhhHhHHHHHHHHHHhCC-CcEEEEcccCCcccccccc
Q 011994 231 CRIVRKGLAGDLKKAMKDG-KPIIIEGIHLDPSIYLMDD 268 (473)
Q Consensus 231 ~~~V~egL~~~IekaL~eG-~sVIIEGvhL~Pel~l~~~ 268 (473)
....++....+| .||||.|+.+.-.-++.++
T Consensus 81 -------a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~ 112 (308)
T COG0324 81 -------ALAAIDDILARGKLPILVGGTGLYLKALLEGL 112 (308)
T ss_pred -------HHHHHHHHHhCCCCcEEEccHHHHHHHHHcCC
Confidence 334555566777 6788999887655544433
No 115
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=97.37 E-value=0.00031 Score=73.56 Aligned_cols=96 Identities=20% Similarity=0.313 Sum_probs=56.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChh-hHHHHHHHHHhhc-----cCCCeE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEE-YISRYRMMTRFHH-----QRVPLV 162 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~-~a~rY~l~~~~~~-----~~~P~i 162 (473)
|..+|..+.-.|.++..++.++..++...++.++...-=.-.-+......-||-. .+. .++..+.. ..+..+
T Consensus 3 ~~eyL~~~~~~p~~~~~a~qr~~dmI~~~g~~~~~~~~~~~~~y~~F~~~~~G~~~~i~--~lv~~l~~~a~g~~~~r~i 80 (361)
T smart00763 3 LAEYLDIVKEDPLVAANAHQRLLDMIGEAGVEDVVENNRGIKRYRFFDHDFFGMEEAIE--RFVNYFKSAAQGLEERKQI 80 (361)
T ss_pred HHHHHHHHhhChHHHHHHHHHHHHHHhccCcEEeccCCcceeeccccchhccCcHHHHH--HHHHHHHHHHhcCCCCCcE
Confidence 5677888877888888888888888877766543210000000111111112211 011 12222221 223468
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
++|+||||+||||+|..|+..++.
T Consensus 81 l~L~GPPGsGKStla~~La~~l~~ 104 (361)
T smart00763 81 LYLLGPVGGGKSSLVECLKRGLEE 104 (361)
T ss_pred EEEECCCCCCHHHHHHHHHHHHhh
Confidence 999999999999999999999964
No 116
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=97.36 E-value=0.00025 Score=72.07 Aligned_cols=98 Identities=27% Similarity=0.394 Sum_probs=56.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHHhhCCCCCCC----CCccccccccChHH--HHHHHHhcchh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELLRTSTDAPLS----SSPVWARNFSSSEE--LVTEFVRECRI 233 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~Lr~~~s~pL~----~~~~W~~~y~s~Ee--lI~gf~~q~~~ 233 (473)
+|+|+|++|||||++|..|++.++... ++.|. +++.|.-....|.. ..+.+--++-++.+ -+..|...
T Consensus 1 vi~i~G~t~~GKs~la~~l~~~~~~~i-is~Ds~qvY~~l~IgTakp~~~e~~~v~hhlid~~~~~~~~~v~~f~~~--- 76 (287)
T TIGR00174 1 VIFIMGPTAVGKSQLAIQLAKKLNAEI-ISVDSMQIYKGMDIGTAKPSLQEREGIPHHLIDILDPSESYSAADFQTL--- 76 (287)
T ss_pred CEEEECCCCCCHHHHHHHHHHhCCCcE-EEechhheeeeccccCCCCCHHHHcCccEEEEEEechhheEcHHHHHHH---
Confidence 489999999999999999999999885 57776 34544322222211 01111101111111 12333332
Q ss_pred hHhHHHHHHHHHHhCCC-cEEEEcccCCccccccc
Q 011994 234 VRKGLAGDLKKAMKDGK-PIIIEGIHLDPSIYLMD 267 (473)
Q Consensus 234 V~egL~~~IekaL~eG~-sVIIEGvhL~Pel~l~~ 267 (473)
....|+.....|+ +||+.|+++.-.-++.+
T Consensus 77 ----a~~~i~~~~~~g~~pi~vGGTg~Yi~all~g 107 (287)
T TIGR00174 77 ----ALNAIADITARGKIPLLVGGTGLYLKALLEG 107 (287)
T ss_pred ----HHHHHHHHHhCCCCEEEEcCcHHHHHHHHcC
Confidence 2334455556665 78899998876665553
No 117
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.34 E-value=0.00022 Score=67.39 Aligned_cols=39 Identities=28% Similarity=0.499 Sum_probs=30.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVY 196 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir 196 (473)
.+|.+|.|+|++||||||++..|+..++. ..++..|.+.
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~~ 44 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSYY 44 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCccc
Confidence 46889999999999999999999999842 2234555543
No 118
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=97.33 E-value=0.00046 Score=63.27 Aligned_cols=25 Identities=32% Similarity=0.399 Sum_probs=23.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
+|+|+|+|||||||++..|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 7899999999999999999998864
No 119
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=97.33 E-value=0.0015 Score=59.59 Aligned_cols=29 Identities=34% Similarity=0.479 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V 189 (473)
++|.|.|++||||||+++.|+..+ |..++
T Consensus 1 ~~I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~ 32 (200)
T cd01672 1 MFIVFEGIDGAGKTTLIELLAERLEARGYEVV 32 (200)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 479999999999999999999998 65544
No 120
>PRK05439 pantothenate kinase; Provisional
Probab=97.31 E-value=0.00061 Score=70.03 Aligned_cols=49 Identities=33% Similarity=0.455 Sum_probs=36.1
Q ss_pred HHHHHHhh---ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC------CeEEcchhHH
Q 011994 148 YRMMTRFH---HQRVPLVILVCGTACVGKSTIATQLAQRLNL------PNVLQTDMVY 196 (473)
Q Consensus 148 Y~l~~~~~---~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~------~~Vi~tD~ir 196 (473)
......|. ..+.|.+|.|+|+|||||||+|..|+..++- ..++..|.+.
T Consensus 71 ~~~~~~fl~~~~~~~~~iIgIaG~~gsGKSTla~~L~~~l~~~~~~~~v~vi~~DdFy 128 (311)
T PRK05439 71 QAALEQFLGKNGQKVPFIIGIAGSVAVGKSTTARLLQALLSRWPEHPKVELVTTDGFL 128 (311)
T ss_pred HHHHHHHhcccCCCCCEEEEEECCCCCCHHHHHHHHHHHHHhhCCCCceEEEeccccc
Confidence 34455554 4567999999999999999999999987742 2345666554
No 121
>COG0237 CoaE Dephospho-CoA kinase [Coenzyme metabolism]
Probab=97.31 E-value=0.00035 Score=67.52 Aligned_cols=40 Identities=35% Similarity=0.472 Sum_probs=35.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.++|.++|.+||||||+|+.+++ +|++.|.+++.+|+...
T Consensus 2 ~~iIglTG~igsGKStva~~~~~-~G~~vidaD~v~r~~~~ 41 (201)
T COG0237 2 MLIIGLTGGIGSGKSTVAKILAE-LGFPVIDADDVAREVVE 41 (201)
T ss_pred ceEEEEecCCCCCHHHHHHHHHH-cCCeEEEccHHHHHHHh
Confidence 47999999999999999999998 99999988888886544
No 122
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.30 E-value=0.001 Score=71.98 Aligned_cols=37 Identities=30% Similarity=0.415 Sum_probs=31.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+.|+|+|++||||||+++.||+.+|++++ .+|.+.+.
T Consensus 1 m~I~l~G~~GsGKSTv~~~La~~lg~~~i-d~D~~i~~ 37 (488)
T PRK13951 1 MRIFLVGMMGSGKSTIGKRVSEVLDLQFI-DMDEEIER 37 (488)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCeEE-ECcHHHHH
Confidence 36899999999999999999999999987 55555544
No 123
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.29 E-value=0.00024 Score=58.69 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+..++|.|+||+||||++..|+..++..
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 3579999999999999999999999765
No 124
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.26 E-value=0.00058 Score=72.41 Aligned_cols=96 Identities=17% Similarity=0.197 Sum_probs=66.3
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCC
Q 011994 90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTA 169 (473)
Q Consensus 90 sR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~ 169 (473)
-++|...||....+.+|..++...+....... .+++.+.+...|... ... . ..+ ....+.+|+|+|++
T Consensus 148 ~~~L~~~gV~~~~~~~l~~~~~~~~~~~~~~~--~~~v~~~~~~~L~~~-l~~------~--~~~-~~~~~~ii~lvGpt 215 (407)
T PRK12726 148 VKFLKGRGISDTYVADFMQAGRKQFKQVETAH--LDDITDWFVPYLSGK-LAV------E--DSF-DLSNHRIISLIGQT 215 (407)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHhcccccccc--HHHHHHHHHHHhcCc-Eee------C--CCc-eecCCeEEEEECCC
Confidence 78899999999999999999877655433222 356777777776652 100 0 001 12346799999999
Q ss_pred CCcHHHHHHHHHHhc---CCC-eEEcchhHHH
Q 011994 170 CVGKSTIATQLAQRL---NLP-NVLQTDMVYE 197 (473)
Q Consensus 170 GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~ 197 (473)
|+||||++..||..+ |.. .++.+|..|-
T Consensus 216 GvGKTTt~akLA~~l~~~g~~V~lItaDtyR~ 247 (407)
T PRK12726 216 GVGKTTTLVKLGWQLLKQNRTVGFITTDTFRS 247 (407)
T ss_pred CCCHHHHHHHHHHHHHHcCCeEEEEeCCccCc
Confidence 999999999999866 433 2457787753
No 125
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.26 E-value=0.00063 Score=67.42 Aligned_cols=30 Identities=27% Similarity=0.316 Sum_probs=24.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
...++|.||||+||||+|..+|..+|..+.
T Consensus 50 l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~ 79 (233)
T PF05496_consen 50 LDHMLFYGPPGLGKTTLARIIANELGVNFK 79 (233)
T ss_dssp --EEEEESSTTSSHHHHHHHHHHHCT--EE
T ss_pred cceEEEECCCccchhHHHHHHHhccCCCeE
Confidence 447999999999999999999999997754
No 126
>PRK13477 bifunctional pantoate ligase/cytidylate kinase; Provisional
Probab=97.24 E-value=0.00027 Score=76.99 Aligned_cols=40 Identities=28% Similarity=0.334 Sum_probs=34.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
.+|++|.|.|++||||||+|+.||++||+.++..++++|.
T Consensus 282 ~~~~ii~i~G~sgsGKst~a~~la~~l~~~~~d~g~~YR~ 321 (512)
T PRK13477 282 KRQPIIAIDGPAGAGKSTVTRAVAKKLGLLYLDTGAMYRA 321 (512)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCeEecCCceehH
Confidence 4678999999999999999999999999987655555565
No 127
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=97.23 E-value=0.00045 Score=66.87 Aligned_cols=42 Identities=29% Similarity=0.283 Sum_probs=33.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
..|++|.|+|..||||||+++.|+..+|++++..+...++.+
T Consensus 4 ~~~~~IglTG~iGsGKStv~~~l~~~lg~~vidaD~i~~~l~ 45 (204)
T PRK14733 4 INTYPIGITGGIASGKSTATRILKEKLNLNVVCADTISREIT 45 (204)
T ss_pred CceEEEEEECCCCCCHHHHHHHHHHHcCCeEEeccHHHHHHH
Confidence 457899999999999999999999999999764444444443
No 128
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=97.22 E-value=0.0014 Score=71.76 Aligned_cols=37 Identities=19% Similarity=0.247 Sum_probs=31.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.|++.|.+||||||+++.||++||+++|..++.+.+.
T Consensus 8 ~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~~ie~~ 44 (542)
T PRK14021 8 QAVIIGMMGAGKTRVGKEVAQMMRLPFADADVEIERE 44 (542)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCCEEEchHHHHHH
Confidence 6888999999999999999999999997555555554
No 129
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.22 E-value=0.00034 Score=74.16 Aligned_cols=109 Identities=19% Similarity=0.166 Sum_probs=66.7
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--c-ch---hHHHHHhhCCCCCCCCCccccccccChHHH
Q 011994 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--Q-TD---MVYELLRTSTDAPLSSSPVWARNFSSSEEL 223 (473)
Q Consensus 150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi--~-tD---~ir~~Lr~~~s~pL~~~~~W~~~y~s~Eel 223 (473)
..+++.+.......++.||||+||||+|+.||...+..++- + ++ .+|+.+...... +. . ..+
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~~~-~~-~--gr~-------- 105 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEARKN-RL-L--GRR-------- 105 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHHHH-Hh-c--CCc--------
Confidence 34555566666678999999999999999999999877653 1 12 222222110000 00 0 000
Q ss_pred HHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcccccccccC
Q 011994 224 VTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDS 270 (473)
Q Consensus 224 I~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~ 270 (473)
.--|.+..+..-+..++.+...+++|.-+.|.++.-+|.|.+-....
T Consensus 106 tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTENPsF~ln~ALl 152 (436)
T COG2256 106 TILFLDEIHRFNKAQQDALLPHVENGTIILIGATTENPSFELNPALL 152 (436)
T ss_pred eEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCCCCCeeecHHHh
Confidence 00122233333445667777888999999999999999998654433
No 130
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.20 E-value=0.00022 Score=68.24 Aligned_cols=38 Identities=34% Similarity=0.468 Sum_probs=30.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~ 197 (473)
|.+|+++|++|+||||++.+||.++. .. -+++.|.+|-
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ 42 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRI 42 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSST
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCc
Confidence 78999999999999999999999883 32 2346787763
No 131
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=97.19 E-value=0.00046 Score=64.34 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|.|+|.+||||||++..|+...|++++..++..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~~~~~~~i~~D~~~~~~~~ 39 (188)
T TIGR00152 1 IIGLTGGIGSGKSTVANYLADKYHFPVIDADKIAHQVVE 39 (188)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCeEEeCCHHHHHHHh
Confidence 489999999999999999998877998755555566554
No 132
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=97.18 E-value=0.00035 Score=68.61 Aligned_cols=41 Identities=27% Similarity=0.423 Sum_probs=34.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVYEL 198 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir~~ 198 (473)
.++.+|.|+|.+||||||+|+.|...++. ..+++.|.+++.
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~~~~~~~I~~D~YYk~ 48 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLGVEKVVVISLDDYYKD 48 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhCcCcceEeeccccccc
Confidence 34589999999999999999999999984 456677777763
No 133
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.18 E-value=0.0013 Score=74.85 Aligned_cols=91 Identities=20% Similarity=0.146 Sum_probs=58.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG 167 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G 167 (473)
|-+.|..+||.+..+.+|..++++. .+.+++...+.+.|.+. +.+..... .-..+.+|+|+|
T Consensus 130 l~~~Ll~~dv~~~la~~l~~~l~~~--------~~~~~~~~~l~~~L~~~---------l~il~~~~~~~~~g~Vi~lVG 192 (767)
T PRK14723 130 LFRWLLGAGFSGQLARALLERLPVG--------YDRPAAMAWIRNELATH---------LPVLRDEDALLAQGGVLALVG 192 (767)
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHhc--------CCHHHHHHHHHHHHHHH---------hhhccCCCcccCCCeEEEEEC
Confidence 5577889999999999998888643 12234445555544431 11110000 012357999999
Q ss_pred CCCCcHHHHHHHHHHhc----CC-C-eEEcchhHH
Q 011994 168 TACVGKSTIATQLAQRL----NL-P-NVLQTDMVY 196 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L----g~-~-~Vi~tD~ir 196 (473)
++|+||||++.+||..+ |. . .++..|+.|
T Consensus 193 pnGvGKTTTiaKLA~~~~~~~G~kkV~lit~Dt~R 227 (767)
T PRK14723 193 PTGVGKTTTTAKLAARCVAREGADQLALLTTDSFR 227 (767)
T ss_pred CCCCcHHHHHHHHHhhHHHHcCCCeEEEecCcccc
Confidence 99999999999999766 32 2 345678776
No 134
>TIGR00041 DTMP_kinase thymidylate kinase. Function: phosphorylation of DTMP to form DTDP in both de novo and salvage pathways of DTTP synthesis. Catalytic activity: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate.
Probab=97.16 E-value=0.0027 Score=58.75 Aligned_cols=26 Identities=31% Similarity=0.409 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++|.|.|++||||||+++.|++.++
T Consensus 3 g~~IvieG~~GsGKsT~~~~L~~~l~ 28 (195)
T TIGR00041 3 GMFIVIEGIDGAGKTTQANLLKKLLQ 28 (195)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHH
Confidence 46899999999999999999999984
No 135
>COG0283 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.16 E-value=0.00059 Score=67.13 Aligned_cols=38 Identities=32% Similarity=0.402 Sum_probs=32.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
.++|-|-||+|+||||+|+.||.+||+.++..+=+.|.
T Consensus 4 ~~~IAIDGPagsGKsTvak~lA~~Lg~~yldTGamYRa 41 (222)
T COG0283 4 AIIIAIDGPAGSGKSTVAKILAEKLGFHYLDTGAMYRA 41 (222)
T ss_pred ceEEEEeCCCccChHHHHHHHHHHhCCCeecccHHHHH
Confidence 36899999999999999999999999998754444444
No 136
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.15 E-value=0.00035 Score=66.72 Aligned_cols=35 Identities=23% Similarity=0.365 Sum_probs=28.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir~ 197 (473)
+|.|+|+|||||||+|+.|+..++ +.. ++.|.++.
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~~~~~~~-i~~Ddf~~ 36 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRILPNCCV-IHQDDFFK 36 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHHcCCCeE-EccccccC
Confidence 588999999999999999999994 554 56665543
No 137
>PRK11860 bifunctional 3-phosphoshikimate 1-carboxyvinyltransferase/cytidine monophosphate kinase; Provisional
Probab=97.15 E-value=0.0023 Score=71.44 Aligned_cols=38 Identities=24% Similarity=0.267 Sum_probs=32.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
++|.|.|++||||||+|+.||++||++++..++++|..
T Consensus 443 ~~i~i~g~~~~gks~~~~~l~~~~~~~~~~~~~~~~~~ 480 (661)
T PRK11860 443 PVICIDGPTASGKGTVAARVAEALGYHYLDSGALYRLT 480 (661)
T ss_pred ceEEeeCCCCCCHHHHHHHHHHHhCCeEecHHHhhhHH
Confidence 48999999999999999999999999987555555543
No 138
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.15 E-value=0.00092 Score=66.00 Aligned_cols=23 Identities=39% Similarity=0.627 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|+++|.|||||||+|+.||+.|
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L 25 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKEL 25 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHH
Confidence 68999999999999999999988
No 139
>PRK00300 gmk guanylate kinase; Provisional
Probab=97.14 E-value=0.0012 Score=61.69 Aligned_cols=27 Identities=33% Similarity=0.463 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+..+|+|.|++||||||++..|+..++
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 346899999999999999999999876
No 140
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.13 E-value=0.0024 Score=68.25 Aligned_cols=81 Identities=19% Similarity=0.055 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 87 glLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
..|.+.|..+|+.+..|.++...++....... ..+.+...+.+.|..... .. -...+.+|.|.
T Consensus 135 ~~~~~~L~~~~v~~~la~~l~~~~~~~~~~~~----~~~~~~~~l~~~l~~~~~-------~~------~~~~g~vi~lv 197 (420)
T PRK14721 135 MKVLRTLLSAGFSPLLSRHLLEKLPADRDFEQ----SLKKTISLLTLNLRTIGG-------DE------IIEQGGVYALI 197 (420)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHhhhhh----HHHHHHHHHHHHHHhcCC-------cc------ccCCCcEEEEE
Confidence 45568899999999999999888876543111 112233333332221000 00 01235699999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 011994 167 GTACVGKSTIATQLAQRL 184 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L 184 (473)
|++|+||||+..+||.++
T Consensus 198 GpnG~GKTTtlakLA~~~ 215 (420)
T PRK14721 198 GPTGVGKTTTTAKLAARA 215 (420)
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999764
No 141
>PRK14737 gmk guanylate kinase; Provisional
Probab=97.12 E-value=0.00092 Score=63.34 Aligned_cols=26 Identities=31% Similarity=0.403 Sum_probs=24.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|++|+|+|||||||||+++.|..++
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 57899999999999999999998876
No 142
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=97.10 E-value=0.00039 Score=65.30 Aligned_cols=24 Identities=46% Similarity=0.642 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
||.|+|++||||||+|..|+..|+
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhC
Confidence 689999999999999999999996
No 143
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.10 E-value=0.0025 Score=67.14 Aligned_cols=96 Identities=17% Similarity=0.081 Sum_probs=57.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994 87 FLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV 165 (473)
Q Consensus 87 glLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI 165 (473)
.-|.+.|..+|+....|..+...+..... .-+.+...+.+..++... ........ ...+..+|+|
T Consensus 77 ~~l~~~L~~~g~~~~l~~~l~~~~~~~~~-----~~~~~~~~~~~~~~l~~~---------l~~~~~~~~~~~~g~ii~l 142 (374)
T PRK14722 77 GALTKYLFAAGFSAQLVRMIVDNLPEGEG-----YDTLDAAADWAQSVLAAN---------LPVLDSEDALMERGGVFAL 142 (374)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHhhhhhcc-----cCCHHHHHHHHHHHHHhc---------chhhcCCCccccCCcEEEE
Confidence 45557789999998888888877654211 112233444444444331 01111110 1223469999
Q ss_pred EcCCCCcHHHHHHHHHHhc----CC-C-eEEcchhHH
Q 011994 166 CGTACVGKSTIATQLAQRL----NL-P-NVLQTDMVY 196 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L----g~-~-~Vi~tD~ir 196 (473)
+|++|+||||++.+||.++ |. . .++.+|.+|
T Consensus 143 vGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R 179 (374)
T PRK14722 143 MGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYR 179 (374)
T ss_pred ECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccccc
Confidence 9999999999999999764 32 2 334677765
No 144
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=97.09 E-value=0.0013 Score=66.99 Aligned_cols=40 Identities=33% Similarity=0.551 Sum_probs=30.5
Q ss_pred HHHHHHHHhhc---cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 146 SRYRMMTRFHH---QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 146 ~rY~l~~~~~~---~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+..+...|.. .+.|.+|.|+|++||||||+|+.|...+.
T Consensus 45 ~~~~~~~~f~~~~~~~~p~IIGIaG~~GSGKSTlar~L~~ll~ 87 (290)
T TIGR00554 45 RRQAVLEQFLGTNGAKIPYIISIAGSVAVGKSTTARILQALLS 87 (290)
T ss_pred hHHHHHHHHHhcccCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34445555542 45799999999999999999998877663
No 145
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=97.05 E-value=0.00088 Score=61.80 Aligned_cols=29 Identities=28% Similarity=0.494 Sum_probs=25.1
Q ss_pred EcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 166 CGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
+|+|||||||+++.|+.++|..++ .+|.+
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~-~~d~~ 29 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFL-DGDFL 29 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEE-eCccC
Confidence 599999999999999999998875 56654
No 146
>PRK00698 tmk thymidylate kinase; Validated
Probab=97.05 E-value=0.0043 Score=57.52 Aligned_cols=25 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|.|+.||||||++..|++.|
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l 27 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELL 27 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999999999999987
No 147
>PRK14731 coaE dephospho-CoA kinase; Provisional
Probab=97.04 E-value=0.00095 Score=63.91 Aligned_cols=38 Identities=29% Similarity=0.402 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+.|++|.|+|.+||||||++..|+. +|++.+ ..|.+.+
T Consensus 3 ~~~~~igitG~igsGKSt~~~~l~~-~g~~v~-d~D~i~~ 40 (208)
T PRK14731 3 SLPFLVGVTGGIGSGKSTVCRFLAE-MGCELF-EADRVAK 40 (208)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH-CCCeEE-eccHHHH
Confidence 3478999999999999999999986 999875 5565443
No 148
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=97.04 E-value=0.00048 Score=64.52 Aligned_cols=27 Identities=44% Similarity=0.576 Sum_probs=24.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
++|+|.|+|||||||+|..|+.+++.+
T Consensus 2 ~~ili~G~~~sGKS~~a~~l~~~~~~~ 28 (170)
T PRK05800 2 MLILVTGGARSGKSRFAERLAAQSGLQ 28 (170)
T ss_pred CEEEEECCCCccHHHHHHHHHHHcCCC
Confidence 479999999999999999999998754
No 149
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=97.02 E-value=0.0011 Score=71.09 Aligned_cols=34 Identities=38% Similarity=0.508 Sum_probs=30.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.-.|..|+|.|+||||||++|+.||..++.+++.
T Consensus 44 e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~ 77 (441)
T TIGR00390 44 EVTPKNILMIGPTGVGKTEIARRLAKLANAPFIK 77 (441)
T ss_pred ccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 3457899999999999999999999999998763
No 150
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.02 E-value=0.00058 Score=54.51 Aligned_cols=23 Identities=43% Similarity=0.686 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|+|+|++|+||||+++.|+..+
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999999986
No 151
>PRK13975 thymidylate kinase; Provisional
Probab=97.00 E-value=0.00067 Score=62.85 Aligned_cols=28 Identities=36% Similarity=0.348 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+++|+|.|++||||||+++.|+++|+..
T Consensus 2 ~~~I~ieG~~GsGKtT~~~~L~~~l~~~ 29 (196)
T PRK13975 2 NKFIVFEGIDGSGKTTQAKLLAEKLNAF 29 (196)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 4689999999999999999999999853
No 152
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=96.96 E-value=0.0019 Score=62.39 Aligned_cols=30 Identities=27% Similarity=0.349 Sum_probs=27.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
...+|.+|.|.|++||||||+++.|+..+.
T Consensus 29 ~~~~~~iigi~G~~GsGKTTl~~~L~~~l~ 58 (229)
T PRK09270 29 EPQRRTIVGIAGPPGAGKSTLAEFLEALLQ 58 (229)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhh
Confidence 556799999999999999999999998874
No 153
>PTZ00301 uridine kinase; Provisional
Probab=96.95 E-value=0.00062 Score=65.98 Aligned_cols=37 Identities=30% Similarity=0.461 Sum_probs=28.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc----CC-Ce-EEcchhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL----NL-PN-VLQTDMVYE 197 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L----g~-~~-Vi~tD~ir~ 197 (473)
.+|.|+|+|||||||+|..|+.++ |- .. ++..|.++.
T Consensus 4 ~iIgIaG~SgSGKTTla~~l~~~l~~~~~~~~~~vi~~D~yy~ 46 (210)
T PTZ00301 4 TVIGISGASGSGKSSLSTNIVSELMAHCGPVSIGVICEDFYYR 46 (210)
T ss_pred EEEEEECCCcCCHHHHHHHHHHHHHhhcCCCeEEEeCCCCCcc
Confidence 689999999999999999998776 21 22 456676653
No 154
>PF01202 SKI: Shikimate kinase; InterPro: IPR000623 Shikimate kinase (2.7.1.71 from EC) catalyses the fifth step in the biosynthesis of aromatic amino acids from chorismate (the so-called shikimate pathway) []. The enzyme catalyses the following reaction: ATP + shikimate = ADP + shikimate-3-phosphate The protein is found in bacteria (gene aroK or aroL), plants and fungi (where it is part of a multifunctional enzyme that catalyses five consecutive steps in this pathway). In 1994, the 3D structure of shikimate kinase was predicted to be very close to that of adenylate kinase, suggesting a functional similarity as well as an evolutionary relationship []. This prediction has since been confirmed experimentally. The protein is reported to possess an alpha/beta fold, consisting of a central sheet of five parallel beta-strands flanked by alpha-helices. Such a topology is very similar to that of adenylate kinase [].; GO: 0004765 shikimate kinase activity, 0005524 ATP binding; PDB: 3VAA_C 1KO8_B 1KO4_B 1KO1_A 1KOF_A 1KNQ_A 1KO5_A 1KAG_A 2PT5_D 1SHK_A ....
Probab=96.92 E-value=0.0029 Score=57.71 Aligned_cols=30 Identities=37% Similarity=0.381 Sum_probs=24.9
Q ss_pred CCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 169 ACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 169 ~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
|||||||+++.||..||++++..++.+.+.
T Consensus 1 ~GsGKStvg~~lA~~L~~~fiD~D~~i~~~ 30 (158)
T PF01202_consen 1 MGSGKSTVGKLLAKRLGRPFIDLDDEIEER 30 (158)
T ss_dssp TTSSHHHHHHHHHHHHTSEEEEHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHhCCCccccCHHHHHH
Confidence 699999999999999999998555555443
No 155
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=96.92 E-value=0.00082 Score=75.57 Aligned_cols=37 Identities=30% Similarity=0.358 Sum_probs=33.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+|.|.|+|||||||+|+.||++||+.++..++++|..
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g~~~r~~ 39 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTGAMYRAC 39 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecCcEeHHH
Confidence 7899999999999999999999999998777776663
No 156
>PRK07667 uridine kinase; Provisional
Probab=96.92 E-value=0.00097 Score=62.97 Aligned_cols=28 Identities=18% Similarity=0.350 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.+.+|.|+|++||||||+|..|+..++
T Consensus 15 ~~~~iIgI~G~~gsGKStla~~L~~~l~ 42 (193)
T PRK07667 15 ENRFILGIDGLSRSGKTTFVANLKENMK 42 (193)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3458999999999999999999999873
No 157
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.89 E-value=0.0032 Score=69.24 Aligned_cols=94 Identities=17% Similarity=0.171 Sum_probs=54.4
Q ss_pred hHHHHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEE
Q 011994 85 SRFLLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVIL 164 (473)
Q Consensus 85 SRglLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIl 164 (473)
.|..|.+.|...|+....+.++...+.... ...+....+...|.+. . .+. .........+|+
T Consensus 293 ~~~~l~~~L~~~Gvs~~la~~L~~~l~~~~--------~~~~~~~~l~~~L~~~-l--------~v~-~~~~l~~G~vIa 354 (559)
T PRK12727 293 VRAQALELMDDYGFDAGLTRDVAMQIPADT--------ELHRGRGLMLGLLSKR-L--------PVA-PVDPLERGGVIA 354 (559)
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHhhhccc--------chhhHHHHHHHHHHHh-c--------CcC-ccccccCCCEEE
Confidence 344555778888888888777777665431 1122333444444331 0 000 000112345899
Q ss_pred EEcCCCCcHHHHHHHHHHhc-----CCC-eEEcchhHH
Q 011994 165 VCGTACVGKSTIATQLAQRL-----NLP-NVLQTDMVY 196 (473)
Q Consensus 165 I~G~~GsGKSTlA~~LA~~L-----g~~-~Vi~tD~ir 196 (473)
|+|++|+||||++..|+..+ +.. .++.+|..|
T Consensus 355 LVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyR 392 (559)
T PRK12727 355 LVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQR 392 (559)
T ss_pred EECCCCCCHHHHHHHHHHHHHHhcCCCceEEEeccccc
Confidence 99999999999999999764 222 234667655
No 158
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=96.89 E-value=0.0018 Score=69.42 Aligned_cols=32 Identities=41% Similarity=0.542 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|..|+|.|+||+||||+|+.||..++.+++.
T Consensus 49 ~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~ 80 (443)
T PRK05201 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (443)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCChhee
Confidence 47899999999999999999999999998763
No 159
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.88 E-value=0.0011 Score=62.73 Aligned_cols=38 Identities=21% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~i 195 (473)
.++.+|.|+|++||||||+++.|+..++. ..++..|.+
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~~~~~~i~~D~~ 43 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGKLEIVIISQDNY 43 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcccCCeEeccccc
Confidence 45679999999999999999999988762 233455544
No 160
>PRK14734 coaE dephospho-CoA kinase; Provisional
Probab=96.88 E-value=0.0016 Score=62.26 Aligned_cols=39 Identities=26% Similarity=0.262 Sum_probs=31.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.+|.|+|.+||||||+++.|+. +|++++..++..++.+.
T Consensus 2 ~~igitG~igsGKst~~~~l~~-~g~~vid~D~i~~~~~~ 40 (200)
T PRK14734 2 LRIGLTGGIGSGKSTVADLLSS-EGFLIVDADQVARDIVE 40 (200)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCeEEeCcHHHHHHHh
Confidence 3799999999999999999987 89987655445555544
No 161
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.88 E-value=0.0009 Score=58.79 Aligned_cols=27 Identities=37% Similarity=0.607 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
|+|.|+||+|||++++.||+.++.+.+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~~~~~~ 28 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALLGRPVI 28 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHHTCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHhhcceE
Confidence 799999999999999999999987654
No 162
>PRK12269 bifunctional cytidylate kinase/ribosomal protein S1; Provisional
Probab=96.85 E-value=0.0012 Score=75.97 Aligned_cols=38 Identities=26% Similarity=0.344 Sum_probs=33.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
++|.|.|++||||||+|..||.+||+.++..++++|..
T Consensus 35 ~~i~idG~~gsGKst~~~~la~~l~~~~~~~g~~yRa~ 72 (863)
T PRK12269 35 VIIALDGPAGSGKSSVCRLLASRLGAQCLNTGSFYRAF 72 (863)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHH
Confidence 38999999999999999999999999987555666654
No 163
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.85 E-value=0.00096 Score=60.53 Aligned_cols=89 Identities=21% Similarity=0.299 Sum_probs=44.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHHH
Q 011994 163 ILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGDL 242 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~I 242 (473)
|.|+|++|+|||||+..|+.+ |++.| ....|+.+........ ....|. .-...|.. .+.......+
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v--~E~ar~~~~~~~~~~~-~~~~~~-------~~~~~~~~---~~l~~~~~~~ 67 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV--PEYAREIIEEGGRRDR-DTLPWE-------DDLLAFQE---GILEQQLEAE 67 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE----TTHHHHHHSSSS-T-TSS-TT--------THHHHHH---H--HHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE--eecHHHHHHHhccccc-hhhhhc-------chHHHHHH---HHHHHHHHHH
Confidence 789999999999999999988 88865 6677776654321110 000110 00111111 1111111122
Q ss_pred HHHHhCCCcEEEEcccCCcccccc
Q 011994 243 KKAMKDGKPIIIEGIHLDPSIYLM 266 (473)
Q Consensus 243 ekaL~eG~sVIIEGvhL~Pel~l~ 266 (473)
..+ .....||.|...+.+-.|..
T Consensus 68 ~~~-~~~~~vi~Dr~~~d~~aY~~ 90 (163)
T PF13521_consen 68 ASA-KSSDVVICDRGPLDTLAYSE 90 (163)
T ss_dssp HHH-H-SSEEEESS-HHHHHHHHH
T ss_pred Hhh-cCCCcEEEeCChHHHHHHHH
Confidence 222 56777889999888888754
No 164
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.84 E-value=0.0024 Score=62.81 Aligned_cols=26 Identities=27% Similarity=0.382 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+..++|.|+||+||||+|+.+|..+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHH
Confidence 45678999999999999999999876
No 165
>KOG3078 consensus Adenylate kinase [Nucleotide transport and metabolism]
Probab=96.84 E-value=0.0018 Score=64.43 Aligned_cols=83 Identities=18% Similarity=0.303 Sum_probs=61.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL 238 (473)
++...+|.|+||+||.|+|..|+..+++.++...|.+|+.+.... ........+.+++..|.+.+
T Consensus 14 ~~~~~v~~G~pg~gkgt~a~~l~~~~~~~hl~tGdllr~~ia~~t---------------elg~~~~~~~~~g~lvpDei 78 (235)
T KOG3078|consen 14 KGVRAVLLGAPGSGKGTQAPRLTKNFGVIHISTGDLLRDEIASGT---------------ELGKEAKEAIDKGKLVPDEV 78 (235)
T ss_pred cceEEEEEeCCCCCCCccCHHHHHhcCCccchhHHHHHHHHhccC---------------cHHHHHHHHHHhcCcCcHHH
Confidence 467899999999999999999999999999878899999866321 12346677888888887775
Q ss_pred H-HHHHHHHhCC---CcEEEEc
Q 011994 239 A-GDLKKAMKDG---KPIIIEG 256 (473)
Q Consensus 239 ~-~~IekaL~eG---~sVIIEG 256 (473)
- ..+.+.+..+ ...|+||
T Consensus 79 v~~~l~~~l~~~~~~~~~ildg 100 (235)
T KOG3078|consen 79 VVRLLEKRLENPRCQKGFILDG 100 (235)
T ss_pred HHHHHHhhccccccccccccCC
Confidence 3 3455555554 4455554
No 166
>PLN02348 phosphoribulokinase
Probab=96.84 E-value=0.0014 Score=69.50 Aligned_cols=30 Identities=23% Similarity=0.275 Sum_probs=27.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
....|++|.|+|.|||||||+|+.|+..||
T Consensus 45 ~~~~p~IIGIaG~SGSGKSTfA~~L~~~Lg 74 (395)
T PLN02348 45 ADDGTVVIGLAADSGCGKSTFMRRLTSVFG 74 (395)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 456789999999999999999999999996
No 167
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=96.83 E-value=0.0028 Score=53.18 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V 189 (473)
...++|.|++|+||||++..++..+ +..++
T Consensus 19 ~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~ 51 (151)
T cd00009 19 PKNLLLYGPPGTGKTTLARAIANELFRPGAPFL 51 (151)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeE
Confidence 4578999999999999999999988 55443
No 168
>PF01591 6PF2K: 6-phosphofructo-2-kinase; InterPro: IPR013079 6-Phosphofructo-2-kinase (2.7.1.105 from EC, 3.1.3.46 from EC) is a bifunctional enzyme that catalyses both the synthesis and the degradation of fructose-2, 6-bisphosphate. The fructose-2,6-bisphosphatase reaction involves a phosphohistidine intermediate. The catalytic pathway is: ATP + D-fructose 6-phosphate = ADP + D-fructose 2,6-bisphosphate D-fructose 2,6-bisphosphate + H2O = 6-fructose 6-phosphate + Pi The enzyme is important in the regulation of hepatic carbohydrate metabolism and is found in greatest quantities in the liver, kidney and heart. In mammals, several genes often encode different isoforms, each of which differs in its tissue distribution and enzymatic activity []. The family described here bears a resemblance to the ATP-driven phospho-fructokinases, however, they share little sequence similarity, although a few residues seem key to their interaction with fructose 6-phosphate []. This domain forms the N-terminal region of this enzyme, while IPR013078 from INTERPRO forms the C-terminal domain.; GO: 0003873 6-phosphofructo-2-kinase activity, 0005524 ATP binding, 0006000 fructose metabolic process; PDB: 2DWO_A 3QPW_A 3QPV_A 3QPU_A 2I1V_B 2DWP_A 2AXN_A 1K6M_B 3BIF_A 2BIF_A ....
Probab=96.83 E-value=0.0046 Score=60.86 Aligned_cols=41 Identities=34% Similarity=0.344 Sum_probs=30.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC---C--CeEEcchhHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN---L--PNVLQTDMVYELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~--~~Vi~tD~ir~~L 199 (473)
.+++|+++|.|+.|||++|++|++.|+ + ..+..+|.-|+..
T Consensus 11 ~kl~ivmVGLPArGKs~ia~kl~ryL~w~g~~~~vFn~g~yRR~~~ 56 (222)
T PF01591_consen 11 GKLVIVMVGLPARGKSYIARKLCRYLNWLGVKTKVFNVGDYRRKLS 56 (222)
T ss_dssp --EEEEEESSTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhcCCCcceeecccceeccc
Confidence 468999999999999999999998884 3 3334556656554
No 169
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=96.83 E-value=0.0035 Score=57.08 Aligned_cols=29 Identities=31% Similarity=0.491 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+++|+++.+.|++|+|||.+++.||+.|
T Consensus 49 ~p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 49 NPRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred CCCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 46789999999999999999999999985
No 170
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.82 E-value=0.0009 Score=62.72 Aligned_cols=36 Identities=31% Similarity=0.478 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC---CC-eEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN---LP-NVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg---~~-~Vi~tD~ir~ 197 (473)
+|.|+|.|||||||+|..|+..++ .. .+++.|.+..
T Consensus 1 ii~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf~~ 40 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDYYV 40 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhccc
Confidence 589999999999999999999873 22 3456666654
No 171
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.0039 Score=65.36 Aligned_cols=73 Identities=23% Similarity=0.385 Sum_probs=52.6
Q ss_pred HHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 105 KIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 105 rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|..++-++++|+ ++-+..|.-.|+++ .+|..+-..++..-.|..||+.||.|+|||-+|++||+-.
T Consensus 8 eIV~eLd~yIIGQ-------~~AKkaVAIALRNR------~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~ 74 (444)
T COG1220 8 EIVSELDRYIIGQ-------DEAKKAVAIALRNR------WRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA 74 (444)
T ss_pred HHHHHHHhHhcCc-------HHHHHHHHHHHHHH------HHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHh
Confidence 4666777766654 45555555445542 2333455566667789999999999999999999999988
Q ss_pred CCCeEE
Q 011994 185 NLPNVL 190 (473)
Q Consensus 185 g~~~Vi 190 (473)
|.|+|-
T Consensus 75 ~aPFiK 80 (444)
T COG1220 75 GAPFIK 80 (444)
T ss_pred CCCeEE
Confidence 988763
No 172
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.82 E-value=0.011 Score=67.31 Aligned_cols=31 Identities=26% Similarity=0.397 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+..++++.|+||+|||++|+.||..++.+++
T Consensus 346 ~~~~lll~GppG~GKT~lAk~iA~~l~~~~~ 376 (775)
T TIGR00763 346 KGPILCLVGPPGVGKTSLGKSIAKALNRKFV 376 (775)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhcCCeE
Confidence 3448999999999999999999999998765
No 173
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.81 E-value=0.001 Score=62.25 Aligned_cols=36 Identities=25% Similarity=0.479 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN--LPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi~tD~ir~ 197 (473)
+|.|.|++||||||+++.|+..++ -..++..|.+..
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~~~~ 38 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDSYYK 38 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCCeEEEEeccccc
Confidence 588999999999999999999873 234556676553
No 174
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.80 E-value=0.012 Score=64.06 Aligned_cols=32 Identities=31% Similarity=0.439 Sum_probs=29.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.-||+.|+||||||++|+.+|..+|++.+
T Consensus 257 ~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~ 288 (489)
T CHL00195 257 PTPRGLLLVGIQGTGKSLTAKAIANDWQLPLL 288 (489)
T ss_pred CCCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45788999999999999999999999999865
No 175
>PRK15453 phosphoribulokinase; Provisional
Probab=96.79 E-value=0.0012 Score=67.51 Aligned_cols=40 Identities=18% Similarity=0.310 Sum_probs=31.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE 197 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~-~~Vi~tD~ir~ 197 (473)
+++.+|.|+|.|||||||+++.|+..++ . ..++..|.++.
T Consensus 3 ~k~piI~ItG~SGsGKTTva~~l~~if~~~~~~~~vi~~D~yh~ 46 (290)
T PRK15453 3 AKHPIIAVTGSSGAGTTTVKRAFEKIFRRENINAAVVEGDSFHR 46 (290)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEEecccccc
Confidence 4677999999999999999999998774 2 33456666654
No 176
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.70 E-value=0.0054 Score=68.22 Aligned_cols=33 Identities=30% Similarity=0.515 Sum_probs=30.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+.|+=+|+.||||||||.||+.+|..+|++++-
T Consensus 221 ~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~ 253 (802)
T KOG0733|consen 221 RPPRGVLLHGPPGCGKTSLANAIAGELGVPFLS 253 (802)
T ss_pred CCCCceeeeCCCCccHHHHHHHHhhhcCCceEe
Confidence 457889999999999999999999999998764
No 177
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=96.67 E-value=0.0052 Score=57.36 Aligned_cols=30 Identities=30% Similarity=0.474 Sum_probs=25.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc--CCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL--NLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~V 189 (473)
+++|+|+||+||||+|++..|.... ++.++
T Consensus 2 ~r~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~ 33 (184)
T smart00072 2 RRPIVLSGPSGVGKGTLLAELIQEIPDAFERV 33 (184)
T ss_pred CcEEEEECCCCCCHHHHHHHHHhcCCcceEee
Confidence 3589999999999999999999886 45444
No 178
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.65 E-value=0.0019 Score=60.61 Aligned_cols=33 Identities=21% Similarity=0.279 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM 194 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ 194 (473)
.+++|+|++||||||+++.|+..++..++ .+|.
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~i-~gd~ 36 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKFI-DGDD 36 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEEE-CCcc
Confidence 37899999999999999999999988765 5555
No 179
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.62 E-value=0.0016 Score=62.10 Aligned_cols=30 Identities=27% Similarity=0.672 Sum_probs=25.8
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 154 FHHQRVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 154 ~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
|..+.+|.+|+|+|++||||||++..|...
T Consensus 7 ~~~~~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 7 FNKPAKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred cCCCCCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 345677899999999999999999999754
No 180
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=96.61 E-value=0.0058 Score=61.50 Aligned_cols=24 Identities=38% Similarity=0.506 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++|.|+|||||||+|+.+|..+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999998888766
No 181
>KOG1384 consensus tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.60 E-value=0.0026 Score=65.99 Aligned_cols=95 Identities=21% Similarity=0.246 Sum_probs=60.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHHhhC-----------CCCCCCCCccccccccChHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELLRTS-----------TDAPLSSSPVWARNFSSSEELVT 225 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~Lr~~-----------~s~pL~~~~~W~~~y~s~EelI~ 225 (473)
+..+|+|+|+.|+|||-||-.||.+++...| .+|-+ ++.+.-. ..++|...-.| +.+-...
T Consensus 6 k~KVvvI~G~TGsGKSrLaVdLA~rf~~EII-NsDkmQvYkGldivTnK~t~~e~~gVPHHLlg~l~~-----~~e~t~~ 79 (348)
T KOG1384|consen 6 KDKVVVIMGATGAGKSRLAVDLATRFPGEII-NSDKMQVYKGLDIVTNKITLQERKGVPHHLLGHLHP-----EAEYTAG 79 (348)
T ss_pred CceEEEEecCCCCChhhhHHHHHHhCCceee-cccceeeecCcccccccCChhhcCCCChHHhCcCCh-----HhhccHH
Confidence 3469999999999999999999999998854 66654 2332211 11222221111 1234466
Q ss_pred HHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc
Q 011994 226 EFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL 265 (473)
Q Consensus 226 gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l 265 (473)
.|...+...++.+.. +...|||+.|+|+.-..++
T Consensus 80 ~F~~~a~~aie~I~~------rgk~PIv~GGs~~yi~al~ 113 (348)
T KOG1384|consen 80 EFEDDASRAIEEIHS------RGKLPIVVGGSNSYLQALL 113 (348)
T ss_pred HHHHHHHHHHHHHHh------CCCCCEEeCCchhhHHHHh
Confidence 777666555554433 4567899999997655443
No 182
>TIGR03575 selen_PSTK_euk L-seryl-tRNA(Sec) kinase, eukaryotic. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents eukaryotic proteins with this activity.
Probab=96.59 E-value=0.0046 Score=64.39 Aligned_cols=24 Identities=38% Similarity=0.704 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+++|+|+||+||||+++.|+..|.
T Consensus 1 ~~~l~Gl~GaGKST~~~~l~~~l~ 24 (340)
T TIGR03575 1 LCVLCGLPAAGKSTLARSLSATLR 24 (340)
T ss_pred CeEEECCCCCCHHHHHHHHHHHHH
Confidence 368999999999999999997774
No 183
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=96.56 E-value=0.0026 Score=67.42 Aligned_cols=34 Identities=21% Similarity=0.402 Sum_probs=31.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
-+.|++++|.|+||||||.+|+.+|..+|+.++.
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~ 178 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIV 178 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEE
Confidence 4679999999999999999999999999998763
No 184
>PLN02422 dephospho-CoA kinase
Probab=96.52 E-value=0.0037 Score=61.87 Aligned_cols=38 Identities=24% Similarity=0.386 Sum_probs=31.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|.++|.+||||||++..|+ .+|++++.+++..++.+.
T Consensus 3 ~igltG~igsGKstv~~~l~-~~g~~~idaD~~~~~l~~ 40 (232)
T PLN02422 3 VVGLTGGIASGKSTVSNLFK-SSGIPVVDADKVARDVLK 40 (232)
T ss_pred EEEEECCCCCCHHHHHHHHH-HCCCeEEehhHHHHHHHH
Confidence 69999999999999999998 689998755556666554
No 185
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=96.52 E-value=0.0055 Score=65.38 Aligned_cols=30 Identities=37% Similarity=0.516 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|||.|+||+|||++|+.||..++.+++.
T Consensus 117 ~~iLL~GP~GsGKT~lAraLA~~l~~pf~~ 146 (413)
T TIGR00382 117 SNILLIGPTGSGKTLLAQTLARILNVPFAI 146 (413)
T ss_pred ceEEEECCCCcCHHHHHHHHHHhcCCCeEE
Confidence 479999999999999999999999988753
No 186
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=96.51 E-value=0.0046 Score=64.84 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.-|+|+|+||||||++|+.+|..++.+++
T Consensus 163 ~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i 194 (389)
T PRK03992 163 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 194 (389)
T ss_pred CCCCceEEECCCCCChHHHHHHHHHHhCCCEE
Confidence 45778999999999999999999999998765
No 187
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=96.50 E-value=0.002 Score=62.60 Aligned_cols=24 Identities=42% Similarity=0.546 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|.|.|++||||||+|+.|+..+.
T Consensus 1 IigI~G~sGSGKTTla~~L~~~l~ 24 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQALLS 24 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999883
No 188
>PHA00729 NTP-binding motif containing protein
Probab=96.50 E-value=0.003 Score=62.39 Aligned_cols=26 Identities=23% Similarity=0.304 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
...|+|+|+||+||||+|..|+.+++
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999999986
No 189
>CHL00181 cbbX CbbX; Provisional
Probab=96.49 E-value=0.0061 Score=61.63 Aligned_cols=26 Identities=31% Similarity=0.414 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+..++|.|+||+||||+|+.+|..+
T Consensus 58 ~~~~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 58 PGLHMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 35679999999999999999998865
No 190
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=96.49 E-value=0.0028 Score=62.66 Aligned_cols=34 Identities=32% Similarity=0.519 Sum_probs=26.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
+++|.||+|+|||.+|-.||+++|.+.| ..|.+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI-~~Driq 36 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVI-SLDRIQ 36 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEE-EE-SGG
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEE-Eeccee
Confidence 7899999999999999999999999964 777664
No 191
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=96.48 E-value=0.007 Score=64.42 Aligned_cols=30 Identities=33% Similarity=0.499 Sum_probs=27.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|||.|+||+|||++|+.||..++.+++.
T Consensus 109 ~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~ 138 (412)
T PRK05342 109 SNILLIGPTGSGKTLLAQTLARILDVPFAI 138 (412)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHhCCCcee
Confidence 468999999999999999999999988763
No 192
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=96.46 E-value=0.0035 Score=68.62 Aligned_cols=30 Identities=27% Similarity=0.408 Sum_probs=27.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+++++||+||||||+.+.||+.||+.++
T Consensus 45 ~~iLlLtGP~G~GKtttv~~La~elg~~v~ 74 (519)
T PF03215_consen 45 KRILLLTGPSGCGKTTTVKVLAKELGFEVQ 74 (519)
T ss_pred cceEEEECCCCCCHHHHHHHHHHHhCCeeE
Confidence 459999999999999999999999998654
No 193
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=96.46 E-value=0.012 Score=57.05 Aligned_cols=32 Identities=31% Similarity=0.402 Sum_probs=27.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+..+|+|.||+|+||||+.+.|-...++.+-+
T Consensus 3 ~G~l~vlsgPSG~GKsTl~k~L~~~~~l~~SV 34 (191)
T COG0194 3 KGLLIVLSGPSGVGKSTLVKALLEDDKLRFSV 34 (191)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhhcCeEEEE
Confidence 46799999999999999999998888665543
No 194
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=96.45 E-value=0.006 Score=59.94 Aligned_cols=36 Identities=31% Similarity=0.457 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.+.|..++|+|.||+||||+|+.|+ +-+.++..|.-
T Consensus 9 ~~~~~~~liyG~~G~GKtt~a~~~~---~~~~~~~~d~~ 44 (220)
T TIGR01618 9 KRIPNMYLIYGKPGTGKTSTIKYLP---GKTLVLSFDMS 44 (220)
T ss_pred CCCCcEEEEECCCCCCHHHHHHhcC---CCCEEEecccc
Confidence 3457889999999999999999886 44555565553
No 195
>PRK07429 phosphoribulokinase; Provisional
Probab=96.44 E-value=0.003 Score=65.24 Aligned_cols=29 Identities=31% Similarity=0.445 Sum_probs=27.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+|++|.|+|++||||||+++.|+..++
T Consensus 5 ~~~~~IIgI~G~SGSGKSTla~~L~~ll~ 33 (327)
T PRK07429 5 PDRPVLLGVAGDSGCGKTTFLRGLADLLG 33 (327)
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHhHhc
Confidence 46789999999999999999999999887
No 196
>PLN02924 thymidylate kinase
Probab=96.43 E-value=0.018 Score=56.15 Aligned_cols=29 Identities=28% Similarity=0.300 Sum_probs=26.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++.++|.|.|..||||||++..|++.|+
T Consensus 13 ~~~g~~IviEGiDGsGKsTq~~~L~~~l~ 41 (220)
T PLN02924 13 ESRGALIVLEGLDRSGKSTQCAKLVSFLK 41 (220)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35578999999999999999999999994
No 197
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=96.42 E-value=0.0072 Score=62.37 Aligned_cols=32 Identities=25% Similarity=0.381 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.-++|.|+||+|||++|+.++..++..++
T Consensus 154 ~~p~gvLL~GppGtGKT~lakaia~~l~~~~~ 185 (364)
T TIGR01242 154 EPPKGVLLYGPPGTGKTLLAKAVAHETNATFI 185 (364)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhCCCCEE
Confidence 45778999999999999999999999987764
No 198
>PRK04195 replication factor C large subunit; Provisional
Probab=96.40 E-value=0.0047 Score=66.35 Aligned_cols=32 Identities=25% Similarity=0.352 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+..++|.|+||+||||+|..||+.+|+.++.
T Consensus 38 ~~~~lLL~GppG~GKTtla~ala~el~~~~ie 69 (482)
T PRK04195 38 PKKALLLYGPPGVGKTSLAHALANDYGWEVIE 69 (482)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 36789999999999999999999999987653
No 199
>PTZ00451 dephospho-CoA kinase; Provisional
Probab=96.40 E-value=0.0047 Score=61.47 Aligned_cols=39 Identities=28% Similarity=0.439 Sum_probs=31.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH-HHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV-YELLR 200 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i-r~~Lr 200 (473)
.+|-|+|..||||||+++.|++.+|++.+ ..|.+ ++.+.
T Consensus 2 ~iIGlTGgIgSGKStVs~~L~~~~G~~vi-DaD~iar~l~~ 41 (244)
T PTZ00451 2 ILIGLTGGIACGKSTVSRILREEHHIEVI-DADLVVRELQA 41 (244)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEE-ehHHHHHHHHc
Confidence 47999999999999999999988999976 55554 55443
No 200
>KOG0635 consensus Adenosine 5'-phosphosulfate kinase [Inorganic ion transport and metabolism]
Probab=96.37 E-value=0.0034 Score=59.54 Aligned_cols=43 Identities=37% Similarity=0.409 Sum_probs=36.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---C-CCeEEcchhHHHHHhh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---N-LPNVLQTDMVYELLRT 201 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g-~~~Vi~tD~ir~~Lr~ 201 (473)
+-.+|+|+|.+||||||+|-.|.+.| | +.+++-.|.+|..+..
T Consensus 30 kGcviWiTGLSgSGKStlACaL~q~L~qrgkl~Y~LDGDNvRhGLN~ 76 (207)
T KOG0635|consen 30 KGCVIWITGLSGSGKSTLACALSQALLQRGKLTYILDGDNVRHGLNK 76 (207)
T ss_pred CCcEEEEeccCCCCchhHHHHHHHHHHhcCceEEEecCccccccccc
Confidence 45799999999999999999999888 3 5677788999987754
No 201
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=96.36 E-value=0.01 Score=65.98 Aligned_cols=96 Identities=20% Similarity=0.316 Sum_probs=54.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHH--HHHhcC-----CChh-hHHHHHHHHHh----h
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFK--LMERRG-----YGEE-YISRYRMMTRF----H 155 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~--lL~~~~-----yge~-~a~rY~l~~~~----~ 155 (473)
-|..+|..+.-.|.++.....++-..+...++.+-.++.-...|+. .+..+. ||-. .+.+ ++..+ .
T Consensus 20 sl~eyL~~vk~~p~~~~~A~~R~~~~Ig~~~vv~~~~~~~~~rif~~~~i~ry~fF~d~yGlee~ier--iv~~l~~Aa~ 97 (644)
T PRK15455 20 SLQEYLELCKQDPSAYANAAERLLMAIGEPEMVDTAKDPRLSRIFSNRVIKRYPAFEEFYGMEEAIEQ--IVSYFRHAAQ 97 (644)
T ss_pred cHHHHHHHHhcChHHHhhHHHHHHHHhCCceeeecCccchhhhhhcccccccccchhcccCcHHHHHH--HHHHHHHHHH
Confidence 4778888888888888888888777764333222211111111111 112222 3311 1221 22222 1
Q ss_pred -ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 -HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 -~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
...+-.+++++||||+||||||..||..|.
T Consensus 98 gl~~~~~IL~LvGPpG~GKSsLa~~la~~le 128 (644)
T PRK15455 98 GLEEKKQILYLLGPVGGGKSSLAERLKSLME 128 (644)
T ss_pred hcCCCCceEEEecCCCCCchHHHHHHHHHHH
Confidence 112335999999999999999999999884
No 202
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.021 Score=64.49 Aligned_cols=59 Identities=22% Similarity=0.380 Sum_probs=39.7
Q ss_pred HHHHHhcCCChh-h---HHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 132 FKLMERRGYGEE-Y---ISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 132 ~~lL~~~~yge~-~---a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.++|.+.-||-+ . +-.|.-+..+...-+-.|++++||||+|||+|++.+|+.+|-.+|-
T Consensus 318 ~~iLd~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~al~RkfvR 380 (782)
T COG0466 318 EKILDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKALGRKFVR 380 (782)
T ss_pred HHHhcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHHhCCCEEE
Confidence 355666556632 1 2223333333333344589999999999999999999999988763
No 203
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0058 Score=65.66 Aligned_cols=42 Identities=24% Similarity=0.224 Sum_probs=35.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE-------cchhHHHHHhhCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVL-------QTDMVYELLRTST 203 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-------~tD~ir~~Lr~~~ 203 (473)
=.|+.||||+||||+..++|..|++..+. .+|.+|+.|....
T Consensus 237 GYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~dLr~LL~~t~ 285 (457)
T KOG0743|consen 237 GYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDSDLRHLLLATP 285 (457)
T ss_pred cceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcHHHHHHHHhCC
Confidence 58999999999999999999999987665 3456888887643
No 204
>PRK06620 hypothetical protein; Validated
Probab=96.33 E-value=0.0082 Score=58.13 Aligned_cols=85 Identities=11% Similarity=0.123 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAG 240 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~ 240 (473)
..++|+|++|||||++++.++...+..+ +........+.... ++. . -++ ++.+. ...+..
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~~~~~-~~~~~~~~~~~~~~--d~l---l-iDd-------i~~~~------~~~lf~ 104 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLSNAYI-IKDIFFNEEILEKY--NAF---I-IED-------IENWQ------EPALLH 104 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhccCCEE-cchhhhchhHHhcC--CEE---E-Eec-------cccch------HHHHHH
Confidence 4689999999999999999998887643 23221111111100 000 0 000 01110 123555
Q ss_pred HHHHHHhCCCcEEEEcccCCccccc
Q 011994 241 DLKKAMKDGKPIIIEGIHLDPSIYL 265 (473)
Q Consensus 241 ~IekaL~eG~sVIIEGvhL~Pel~l 265 (473)
.+......|+.+|+-+..-.|++.+
T Consensus 105 l~N~~~e~g~~ilits~~~p~~l~l 129 (214)
T PRK06620 105 IFNIINEKQKYLLLTSSDKSRNFTL 129 (214)
T ss_pred HHHHHHhcCCEEEEEcCCCccccch
Confidence 6666678888888888777776544
No 205
>PRK13342 recombination factor protein RarA; Reviewed
Probab=96.32 E-value=0.0054 Score=64.59 Aligned_cols=34 Identities=21% Similarity=0.254 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
....+..++|.|+||+||||+|+.|+..++..++
T Consensus 32 ~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~ 65 (413)
T PRK13342 32 EAGRLSSMILWGPPGTGKTTLARIIAGATDAPFE 65 (413)
T ss_pred HcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 3445557888999999999999999999887654
No 206
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.31 E-value=0.0047 Score=61.33 Aligned_cols=31 Identities=23% Similarity=0.338 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..|..++|+|+||+|||++|..+|..++...
T Consensus 28 ~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~ 58 (305)
T TIGR00635 28 EALDHLLLYGPPGLGKTTLAHIIANEMGVNL 58 (305)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3456789999999999999999999998654
No 207
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.31 E-value=0.0084 Score=63.50 Aligned_cols=33 Identities=21% Similarity=0.316 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|.-|+|.|+||||||++|+.+|..++.+++.
T Consensus 177 ~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~ 209 (398)
T PTZ00454 177 DPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIR 209 (398)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 457889999999999999999999999887653
No 208
>PRK09087 hypothetical protein; Validated
Probab=96.27 E-value=0.0046 Score=60.31 Aligned_cols=87 Identities=11% Similarity=0.168 Sum_probs=51.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGLAGD 241 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL~~~ 241 (473)
.++|.|++|||||+|++.++...+..++-..+...+.+.......+. .+.+. .+ . ....++...
T Consensus 46 ~l~l~G~~GsGKThLl~~~~~~~~~~~i~~~~~~~~~~~~~~~~~l~-iDDi~--------~~-~------~~~~~lf~l 109 (226)
T PRK09087 46 VVVLAGPVGSGKTHLASIWREKSDALLIHPNEIGSDAANAAAEGPVL-IEDID--------AG-G------FDETGLFHL 109 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHhcCCEEecHHHcchHHHHhhhcCeEE-EECCC--------CC-C------CCHHHHHHH
Confidence 47999999999999999999988877654333222222111100000 00000 00 0 011335566
Q ss_pred HHHHHhCCCcEEEEcccCCcccc
Q 011994 242 LKKAMKDGKPIIIEGIHLDPSIY 264 (473)
Q Consensus 242 IekaL~eG~sVIIEGvhL~Pel~ 264 (473)
+......|+.+|+-+..-.|++-
T Consensus 110 ~n~~~~~g~~ilits~~~p~~~~ 132 (226)
T PRK09087 110 INSVRQAGTSLLMTSRLWPSSWN 132 (226)
T ss_pred HHHHHhCCCeEEEECCCChHHhc
Confidence 66777889999998877666664
No 209
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=96.27 E-value=0.0037 Score=59.29 Aligned_cols=35 Identities=31% Similarity=0.514 Sum_probs=28.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
++|-|+|..||||||+++.|+. +|++++ ..|.+-+
T Consensus 1 ~iIglTG~igsGKStv~~~l~~-~G~~vi-daD~i~~ 35 (180)
T PF01121_consen 1 MIIGLTGGIGSGKSTVSKILAE-LGFPVI-DADEIAH 35 (180)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EEE-EHHHHHH
T ss_pred CEEEEECCCcCCHHHHHHHHHH-CCCCEE-CccHHHH
Confidence 5899999999999999999987 999976 5554443
No 210
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.26 E-value=0.0042 Score=61.55 Aligned_cols=29 Identities=31% Similarity=0.494 Sum_probs=25.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|+|.|+||+|||++|..||..+|.+++.
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~ 51 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVML 51 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEE
Confidence 46789999999999999999999988663
No 211
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=96.25 E-value=0.0083 Score=65.66 Aligned_cols=33 Identities=27% Similarity=0.315 Sum_probs=28.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
...|.-|||.|+||||||++|+.+|..++...+
T Consensus 213 l~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~ 245 (512)
T TIGR03689 213 LKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIG 245 (512)
T ss_pred CCCCcceEEECCCCCcHHHHHHHHHHhhccccc
Confidence 345778999999999999999999999987643
No 212
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=96.24 E-value=0.0041 Score=61.11 Aligned_cols=30 Identities=37% Similarity=0.530 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
-++|.|.|+-|+||||||..||++||..++
T Consensus 4 ~~~IvI~G~IG~GKSTLa~~La~~l~~~~~ 33 (216)
T COG1428 4 AMVIVIEGMIGAGKSTLAQALAEHLGFKVF 33 (216)
T ss_pred ccEEEEecccccCHHHHHHHHHHHhCCcee
Confidence 368999999999999999999999997765
No 213
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.24 E-value=0.0083 Score=62.22 Aligned_cols=32 Identities=44% Similarity=0.503 Sum_probs=27.6
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..++|.|++|+||||+|+.+|+.++..
T Consensus 34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~ 65 (363)
T PRK14961 34 LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQ 65 (363)
T ss_pred cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCC
Confidence 34567789999999999999999999999753
No 214
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.24 E-value=0.0093 Score=64.23 Aligned_cols=34 Identities=24% Similarity=0.431 Sum_probs=29.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
...|.-++|.|+||||||++|+.||..++.+++.
T Consensus 85 ~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~ 118 (495)
T TIGR01241 85 AKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFS 118 (495)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 3457789999999999999999999999988764
No 215
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=96.24 E-value=0.0058 Score=64.74 Aligned_cols=65 Identities=22% Similarity=0.315 Sum_probs=42.5
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE--cchhHHHH
Q 011994 121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL--QTDMVYEL 198 (473)
Q Consensus 121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi--~tD~ir~~ 198 (473)
.|+-.++++..+..+. |.+. ..+..-...|.|+|++|||||||+..|+..+|...+. ..|.+++.
T Consensus 193 ~iSaT~IR~~p~~~w~---~i~~----------~vr~~~~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~E~~R~~~~~~ 259 (399)
T PRK08099 193 NISGTQIRENPFRYWE---YIPT----------EVRPFFVRTVAILGGESSGKSTLVNKLANIFNTTSAWEYGREYVFSH 259 (399)
T ss_pred CcCHHHHhhCHHHHHH---hcCH----------HHhhCCCcEEEEEcCCCCCHHHHHHHHHHHhCCCeeeeccHHHHHHh
Confidence 4566666666665542 2111 1112234579999999999999999999999987653 33444443
No 216
>PRK06761 hypothetical protein; Provisional
Probab=96.23 E-value=0.0046 Score=62.87 Aligned_cols=68 Identities=9% Similarity=0.139 Sum_probs=43.1
Q ss_pred cEEEEEEEEecchhhHHHHHHhhhhh---------------cccc--ccc-ccchHHHHhhHHHHHHHHhhhccCCceEe
Q 011994 372 PIIIPIVLKMADFDHKALLEEWILTH---------------TFGD--KCL-VQNKDELVSKLKTIQNYLCSFKSQGVTVV 433 (473)
Q Consensus 372 ~iivp~vl~~~~~dh~~lle~~~~~r---------------a~~~--~~~-~~~~~~~i~nl~~IQ~yLc~~~~q~~~vv 433 (473)
|+- |+|+++...|=+..++.=++-| ..+. +.. +..--++++.-|.|+++|... -++...
T Consensus 180 ~l~-p~l~yl~~~dv~~~~~~~~~eR~~~W~~~~~~~~~~~~y~~~~~~~g~~G~i~~~~~r~~~e~~~~~~--L~~~~~ 256 (282)
T PRK06761 180 NLN-PMLFYLEQDDVEFSFRKALKERNPEWSTGIVDYYTNQGYGKEHNLSGVEGRIKVLEARKNLELEILDM--LKMKKE 256 (282)
T ss_pred ccC-cEEEEecccCHHHHHHHHHHhcchHHHHHHHHHHhcCcHHhhcCCCCchhHHHHHHHHHHHHHHHHHh--CCCceE
Confidence 444 9999999998877775423223 1111 000 011148888889999999853 456778
Q ss_pred eecCCCccc
Q 011994 434 NVSATTFPQ 442 (473)
Q Consensus 434 ~i~~~~~~~ 442 (473)
.|+++.++.
T Consensus 257 ~i~~~~~~~ 265 (282)
T PRK06761 257 KINNTKEEI 265 (282)
T ss_pred EcCCcccch
Confidence 888887765
No 217
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.23 E-value=0.0075 Score=65.23 Aligned_cols=32 Identities=28% Similarity=0.421 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..++|+|+||+||||+|+.+|..++..
T Consensus 32 ~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~ 63 (472)
T PRK14962 32 KNSISHAYIFAGPRGTGKTTVARILAKSLNCE 63 (472)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 34456779999999999999999999998753
No 218
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=96.22 E-value=0.0055 Score=58.62 Aligned_cols=38 Identities=21% Similarity=0.185 Sum_probs=29.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|.|+|.+||||||++..|+. +|+.++.+++..++.+.
T Consensus 1 ~i~itG~~gsGKst~~~~l~~-~g~~~i~~D~i~~~~~~ 38 (196)
T PRK14732 1 LIGITGMIGGGKSTALKILEE-LGAFGISADRLAKRYTE 38 (196)
T ss_pred CEEEECCCCccHHHHHHHHHH-CCCEEEecchHHHHHHh
Confidence 478999999999999999975 79887655555555443
No 219
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=96.21 E-value=0.0043 Score=59.08 Aligned_cols=28 Identities=29% Similarity=0.634 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.++.|+|+|+||+||||++.+++..|.
T Consensus 3 ~~~mki~ITG~PGvGKtTl~~ki~e~L~ 30 (179)
T COG1618 3 KMAMKIFITGRPGVGKTTLVLKIAEKLR 30 (179)
T ss_pred CcceEEEEeCCCCccHHHHHHHHHHHHH
Confidence 4578999999999999999999998883
No 220
>PF05729 NACHT: NACHT domain
Probab=96.21 E-value=0.0039 Score=54.81 Aligned_cols=24 Identities=42% Similarity=0.588 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++++|.|.+|+||||+++.++..+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~ 24 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQL 24 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHH
Confidence 378999999999999999999877
No 221
>cd01673 dNK Deoxyribonucleoside kinase (dNK) catalyzes the phosphorylation of deoxyribonucleosides to yield corresponding monophosphates (dNMPs). This family consists of various deoxynucleoside kinases including deoxyribo- cytidine (EC 2.7.1.74), guanosine (EC 2.7.1.113), adenosine (EC 2.7.1.76), and thymidine (EC 2.7.1.21) kinases. They are key enzymes in the salvage of deoxyribonucleosides originating from extra- or intracellular breakdown of DNA.
Probab=96.19 E-value=0.0039 Score=57.83 Aligned_cols=27 Identities=44% Similarity=0.567 Sum_probs=24.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
+|.|.|..||||||++..|++++|+..
T Consensus 1 ~I~ieG~~GsGKSTl~~~L~~~~~~~~ 27 (193)
T cd01673 1 VIVVEGNIGAGKSTLAKELAEHLGYEV 27 (193)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCcc
Confidence 488999999999999999999888654
No 222
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=96.19 E-value=0.0034 Score=53.98 Aligned_cols=23 Identities=43% Similarity=0.640 Sum_probs=20.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 011994 163 ILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
|+|.|+||+|||++|..|+..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999999998774
No 223
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.18 E-value=0.016 Score=60.62 Aligned_cols=27 Identities=33% Similarity=0.589 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
++|++.||||+|||+|++.||++|-+.
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR 204 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIR 204 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheee
Confidence 589999999999999999999999776
No 224
>cd02030 NDUO42 NADH:Ubiquinone oxioreductase, 42 kDa (NDUO42) is a family of proteins that are highly similar to deoxyribonucleoside kinases (dNK). Members of this family have been identified as one of the subunits of NADH:Ubiquinone oxioreductase (complex I), a multi-protein complex located in the inner mitochondrial membrane. The main function of the complex is to transport electrons from NADH to ubiquinone, which is accompanied by the translocation of protons from the mitochondrial matrix to the inter membrane space.
Probab=96.16 E-value=0.016 Score=55.70 Aligned_cols=28 Identities=36% Similarity=0.542 Sum_probs=25.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+|.|-|.-||||||+++.|+++++...+
T Consensus 1 ~I~iEG~~GsGKSTl~~~L~~~l~~~~~ 28 (219)
T cd02030 1 VITVDGNIASGKGKLAKELAEKLGMKYF 28 (219)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCee
Confidence 4889999999999999999999987644
No 225
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=96.14 E-value=0.0045 Score=64.24 Aligned_cols=28 Identities=46% Similarity=0.559 Sum_probs=26.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.|+|.|+||+||||++..||.++|++++
T Consensus 66 ~ilL~G~pGtGKTtla~~lA~~l~~~~~ 93 (327)
T TIGR01650 66 RVMVQGYHGTGKSTHIEQIAARLNWPCV 93 (327)
T ss_pred cEEEEeCCCChHHHHHHHHHHHHCCCeE
Confidence 5899999999999999999999998865
No 226
>PLN03046 D-glycerate 3-kinase; Provisional
Probab=96.14 E-value=0.014 Score=62.84 Aligned_cols=26 Identities=31% Similarity=0.354 Sum_probs=24.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|++|.|.|++||||||++..|...+
T Consensus 211 ~PlIIGIsG~qGSGKSTLa~~L~~lL 236 (460)
T PLN03046 211 PPLVIGFSAPQGCGKTTLVFALDYLF 236 (460)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 79999999999999999999998766
No 227
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.13 E-value=0.018 Score=65.11 Aligned_cols=33 Identities=33% Similarity=0.476 Sum_probs=28.3
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 157 QRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+|. .++|+||+|+|||++|+.||+.++...+
T Consensus 480 ~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~ 513 (731)
T TIGR02639 480 PNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLE 513 (731)
T ss_pred CCCCceeEEEECCCCccHHHHHHHHHHHhcCCeE
Confidence 34576 6899999999999999999999987654
No 228
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.09 E-value=0.019 Score=65.49 Aligned_cols=33 Identities=27% Similarity=0.530 Sum_probs=28.6
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 157 QRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+|. .++|+||+|||||++|+.||..++.+++
T Consensus 484 ~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i 517 (758)
T PRK11034 484 EHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_pred CCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcE
Confidence 35665 7999999999999999999999987754
No 229
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=96.09 E-value=0.0063 Score=61.85 Aligned_cols=32 Identities=22% Similarity=0.320 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..++|.|+||+||||+|..+|..++....
T Consensus 49 ~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~ 80 (328)
T PRK00080 49 EALDHVLLYGPPGLGKTTLANIIANEMGVNIR 80 (328)
T ss_pred CCCCcEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 34567899999999999999999999987643
No 230
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.08 E-value=0.006 Score=55.65 Aligned_cols=29 Identities=31% Similarity=0.434 Sum_probs=26.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..+|++.|..|+||||+++.+++.+|+..
T Consensus 22 ~~~i~l~G~lGaGKTtl~~~l~~~lg~~~ 50 (133)
T TIGR00150 22 GTVVLLKGDLGAGKTTLVQGLLQGLGIQG 50 (133)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHcCCCC
Confidence 45899999999999999999999999753
No 231
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=96.08 E-value=0.007 Score=56.78 Aligned_cols=26 Identities=35% Similarity=0.477 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..++++||+|+|||.+|+.||+.+..
T Consensus 4 ~~~ll~GpsGvGKT~la~~la~~l~~ 29 (171)
T PF07724_consen 4 SNFLLAGPSGVGKTELAKALAELLFV 29 (171)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHT-
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999985
No 232
>PRK03333 coaE dephospho-CoA kinase/protein folding accessory domain-containing protein; Provisional
Probab=96.08 E-value=0.0075 Score=63.63 Aligned_cols=38 Identities=32% Similarity=0.318 Sum_probs=30.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.|.|+|..||||||+++.|+. +|++++.++...++.+.
T Consensus 3 ~IgltG~igsGKStv~~~L~~-~G~~vidaD~i~~~l~~ 40 (395)
T PRK03333 3 RIGLTGGIGAGKSTVAARLAE-LGAVVVDADVLAREVVE 40 (395)
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCeEEehHHHHHHHhc
Confidence 689999999999999999987 89997644444455443
No 233
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.08 E-value=0.0081 Score=56.65 Aligned_cols=28 Identities=14% Similarity=0.171 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...+..|+|.|++|+|||++|+.++..+
T Consensus 35 ~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 35 GKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred cCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4456789999999999999999999876
No 234
>cd04155 Arl3 Arl3 subfamily. Arl3 (Arf-like 3) is an Arf family protein that differs from most Arf family members in the N-terminal extension. In is inactive, GDP-bound form, the N-terminal extension forms an elongated loop that is hydrophobically anchored into the membrane surface; however, it has been proposed that this region might form a helix in the GTP-bound form. The delta subunit of the rod-specific cyclic GMP phosphodiesterase type 6 (PDEdelta) is an Arl3 effector. Arl3 binds microtubules in a regulated manner to alter specific aspects of cytokinesis via interactions with retinitis pigmentosa 2 (RP2). It has been proposed that RP2 functions in concert with Arl3 to link the cell membrane and the cytoskeleton in photoreceptors as part of the cell signaling or vesicular transport machinery. In mice, the absence of Arl3 is associated with abnormal epithelial cell proliferation and cyst formation.
Probab=96.07 E-value=0.0077 Score=53.85 Aligned_cols=34 Identities=29% Similarity=0.431 Sum_probs=26.3
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+++++.....+..|+|.|++|+||||+...|...
T Consensus 4 ~~~~~~~~~~~~~v~i~G~~g~GKStLl~~l~~~ 37 (173)
T cd04155 4 LLRKLRKSSEEPRILILGLDNAGKTTILKQLASE 37 (173)
T ss_pred HHHHhhccCCccEEEEEccCCCCHHHHHHHHhcC
Confidence 3444444455678999999999999999999753
No 235
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.04 E-value=0.011 Score=60.35 Aligned_cols=32 Identities=31% Similarity=0.521 Sum_probs=29.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|..|||.|+||+|||.+|+.||...+.+.++
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~ 181 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLL 181 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEE
Confidence 48899999999999999999999999988765
No 236
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=96.02 E-value=0.014 Score=62.80 Aligned_cols=32 Identities=19% Similarity=0.344 Sum_probs=28.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.-++|+|+||||||++|+.+|..++.+++
T Consensus 215 ~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi 246 (438)
T PTZ00361 215 KPPKGVILYGPPGTGKTLLAKAVANETSATFL 246 (438)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCCEE
Confidence 45778999999999999999999999987754
No 237
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=95.99 E-value=0.019 Score=59.32 Aligned_cols=38 Identities=24% Similarity=0.314 Sum_probs=31.9
Q ss_pred HHHHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 147 RYRMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 147 rY~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.++..+. ...++.+|-|+|+||+||||+...|..+|
T Consensus 37 a~~ll~~l~p~tG~a~viGITG~PGaGKSTli~~L~~~l 75 (323)
T COG1703 37 ARELLRALYPRTGNAHVIGITGVPGAGKSTLIEALGREL 75 (323)
T ss_pred HHHHHHHHhhcCCCCcEEEecCCCCCchHHHHHHHHHHH
Confidence 345655554 67789999999999999999999999888
No 238
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=95.99 E-value=0.01 Score=59.30 Aligned_cols=33 Identities=24% Similarity=0.403 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..+.|.++++.|++|+||||+|..++..++..+
T Consensus 39 ~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~ 71 (316)
T PHA02544 39 KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEV 71 (316)
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccc
Confidence 345578899999999999999999999887543
No 239
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.98 E-value=0.012 Score=64.06 Aligned_cols=32 Identities=38% Similarity=0.486 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..++|+|++|+||||+|+.||+.++..
T Consensus 36 ~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce 67 (484)
T PRK14956 36 SGKIGHAYIFFGPRGVGKTTIARILAKRLNCE 67 (484)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcc
Confidence 44456779999999999999999999999864
No 240
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.96 E-value=0.021 Score=53.61 Aligned_cols=26 Identities=50% Similarity=0.635 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+++|.|++|||||++|..++...+-+
T Consensus 1 ~~li~G~~~sGKS~~a~~~~~~~~~~ 26 (169)
T cd00544 1 IILVTGGARSGKSRFAERLAAELGGP 26 (169)
T ss_pred CEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 47999999999999999999886643
No 241
>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional
Probab=95.93 E-value=0.012 Score=65.82 Aligned_cols=41 Identities=17% Similarity=0.331 Sum_probs=31.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC----eEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLP----NVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~----~Vi~tD~ir~~Lr 200 (473)
..+|++.|.||+||||+|+.|++.|++. .+...|.+|..+.
T Consensus 215 ~~~~~~vglp~~GKStia~~L~~~l~~~~~~~~~~~~~~~rr~~~ 259 (664)
T PTZ00322 215 SLIVIMVGLPGRGKTYVARQIQRYFQWNGLQSRIFIHQAYRRRLE 259 (664)
T ss_pred ceeEEecccCCCChhHHHHHHHHHHHhcCCCcEEEccchhHhhhc
Confidence 3589999999999999999999998543 3345566665543
No 242
>PLN02796 D-glycerate 3-kinase
Probab=95.92 E-value=0.0081 Score=62.86 Aligned_cols=28 Identities=32% Similarity=0.386 Sum_probs=25.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..|.+|.|.|++||||||++..|+..+.
T Consensus 98 ~~pliIGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 98 IPPLVIGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHhc
Confidence 4789999999999999999999998884
No 243
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.044 Score=62.19 Aligned_cols=39 Identities=23% Similarity=0.325 Sum_probs=31.6
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+..++..-+-.|++|.||||+|||++|+.+|+.||-.++
T Consensus 429 V~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFf 467 (906)
T KOG2004|consen 429 VGKLRGSVQGKILCFVGPPGVGKTSIAKSIARALNRKFF 467 (906)
T ss_pred HHhhcccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceE
Confidence 344444445679999999999999999999999997654
No 244
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=95.90 E-value=0.0061 Score=54.77 Aligned_cols=24 Identities=33% Similarity=0.632 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|+|+|++||||||++..|+..+.
T Consensus 1 ~i~i~GpsGsGKstl~~~L~~~~~ 24 (137)
T cd00071 1 LIVLSGPSGVGKSTLLKRLLEEFD 24 (137)
T ss_pred CEEEECCCCCCHHHHHHHHHhcCC
Confidence 368899999999999999998764
No 245
>PRK09435 membrane ATPase/protein kinase; Provisional
Probab=95.89 E-value=0.017 Score=60.07 Aligned_cols=36 Identities=31% Similarity=0.405 Sum_probs=29.3
Q ss_pred HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++..+. ..+.|.+|.|+|+||+||||++..|...+
T Consensus 44 ~l~~~~~~~~~~~~~igi~G~~GaGKSTl~~~l~~~l 80 (332)
T PRK09435 44 ELLDALLPHTGNALRIGITGVPGVGKSTFIEALGMHL 80 (332)
T ss_pred HHHHHHhhcCCCcEEEEEECCCCCCHHHHHHHHHHHH
Confidence 3555554 36789999999999999999999987766
No 246
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.89 E-value=0.016 Score=65.40 Aligned_cols=33 Identities=24% Similarity=0.334 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+.|.-|||.|+||||||++|+.||..++.+++.
T Consensus 485 ~~~~giLL~GppGtGKT~lakalA~e~~~~fi~ 517 (733)
T TIGR01243 485 RPPKGVLLFGPPGTGKTLLAKAVATESGANFIA 517 (733)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHhcCCCEEE
Confidence 457789999999999999999999999987653
No 247
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.018 Score=61.76 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=29.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|..|||.|+||||||++|..+|..++.+++.
T Consensus 273 ~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~ 306 (494)
T COG0464 273 LRPPKGVLLYGPPGTGKTLLAKAVALESRSRFIS 306 (494)
T ss_pred CCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEE
Confidence 3567799999999999999999999988888763
No 248
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.89 E-value=0.013 Score=66.04 Aligned_cols=32 Identities=44% Similarity=0.476 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus 33 ~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~ 64 (702)
T PRK14960 33 RGRLHHAYLFTGTRGVGKTTIARILAKCLNCE 64 (702)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 44557789999999999999999999999864
No 249
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=95.86 E-value=0.011 Score=58.92 Aligned_cols=24 Identities=33% Similarity=0.439 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++|.|++|+||||+|+.+++.+.
T Consensus 38 ~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 38 HLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhc
Confidence 578999999999999999999884
No 250
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.86 E-value=0.014 Score=61.27 Aligned_cols=31 Identities=32% Similarity=0.341 Sum_probs=27.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
.+.|..++|.|++|+||||+|..+|+.++..
T Consensus 35 ~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~ 65 (397)
T PRK14955 35 GRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (397)
T ss_pred CCcceeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 4557779999999999999999999999774
No 251
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.86 E-value=0.0073 Score=55.19 Aligned_cols=35 Identities=37% Similarity=0.431 Sum_probs=27.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCe-EEcchhHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPN-VLQTDMVY 196 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~-Vi~tD~ir 196 (473)
++++.|++|+||||++..|+..+ |... ++..|..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~~~ 40 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADTYR 40 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCCCC
Confidence 68999999999999999999876 5543 45667654
No 252
>KOG3220 consensus Similar to bacterial dephospho-CoA kinase [Coenzyme transport and metabolism]
Probab=95.85 E-value=0.048 Score=53.72 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=30.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
.+|-++|..||||||+++.+- ++|++.|.++-..|+..
T Consensus 2 ~iVGLTGgiatGKStVs~~f~-~~G~~vIDaD~vaR~vv 39 (225)
T KOG3220|consen 2 LIVGLTGGIATGKSTVSQVFK-ALGIPVIDADVVAREVV 39 (225)
T ss_pred eEEEeecccccChHHHHHHHH-HcCCcEecHHHHHHHHh
Confidence 478899999999999999996 89999764443445554
No 253
>COG4240 Predicted kinase [General function prediction only]
Probab=95.84 E-value=0.011 Score=59.24 Aligned_cols=29 Identities=28% Similarity=0.491 Sum_probs=25.4
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.++|.++.|+|+.||||||++..|-..|
T Consensus 46 e~grPli~gisGpQGSGKStls~~i~~~L 74 (300)
T COG4240 46 ERGRPLIVGISGPQGSGKSTLSALIVRLL 74 (300)
T ss_pred hcCCceEEEeecCCCCchhhHHHHHHHHH
Confidence 46779999999999999999999886655
No 254
>PRK06921 hypothetical protein; Provisional
Probab=95.83 E-value=0.071 Score=53.42 Aligned_cols=25 Identities=28% Similarity=0.316 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..-++|.|++|+|||.|+..++..+
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l 141 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANEL 141 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHH
Confidence 3468999999999999999999876
No 255
>PLN02318 phosphoribulokinase/uridine kinase
Probab=95.82 E-value=0.015 Score=65.02 Aligned_cols=38 Identities=16% Similarity=0.207 Sum_probs=30.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
..+.+|.|+|++||||||+++.|+..+....++..|.+
T Consensus 63 ~~riIIGIaGpSGSGKTTLAk~LaglLp~vgvIsmDdy 100 (656)
T PLN02318 63 DGIILVGVAGPSGAGKTVFTEKVLNFMPSIAVISMDNY 100 (656)
T ss_pred CCeEEEEEECCCCCcHHHHHHHHHhhCCCcEEEEEcce
Confidence 45789999999999999999999998854444555544
No 256
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.81 E-value=0.014 Score=67.64 Aligned_cols=32 Identities=38% Similarity=0.493 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.|+..
T Consensus 34 ~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce 65 (944)
T PRK14949 34 QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCE 65 (944)
T ss_pred hCCCCeEEEEECCCCCCHHHHHHHHHHhccCc
Confidence 34567788999999999999999999999865
No 257
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=95.80 E-value=0.0075 Score=54.39 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=19.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
....|.+++|.|++|+|||++...+..++
T Consensus 20 ~~~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 20 QSGSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp SS-----EEE-B-TTSSHHHHHHHHHHHH
T ss_pred HcCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34557899999999999999999888776
No 258
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=95.80 E-value=0.071 Score=61.20 Aligned_cols=100 Identities=21% Similarity=0.287 Sum_probs=57.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhc-Cc--------------------ccccHHHHHHHHHHHHHhcCCChh-hHH
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDN-SL--------------------LDVSQSDLEANLFKLMERRGYGEE-YIS 146 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~-~v--------------------~~I~~~eLe~~v~~lL~~~~yge~-~a~ 146 (473)
|..-+..++++.++..++-.++.+.-.-. .- ..-..-+|. ...++|.+.-||.+ .-+
T Consensus 254 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~e~~~~~~yl~~~~~~pw~~~~~~~~~~~-~~~~~l~~~~~g~~~vK~ 332 (784)
T PRK10787 254 LKRKIDAAKMPKEAKEKAEAELQKLKMMSPMSAEATVVRGYIDWMVQVPWNARSKVKKDLR-QAQEILDTDHYGLERVKD 332 (784)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHhCCCCCCCcccccHH-HHHHHhhhhccCHHHHHH
Confidence 44556778888888888888877642211 00 011111222 22345555446633 222
Q ss_pred HHH--HH-HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 147 RYR--MM-TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 147 rY~--l~-~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+.. +. ..........+++|.|+||+||||+++.+|..+|.+++
T Consensus 333 ~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~ 378 (784)
T PRK10787 333 RILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKATGRKYV 378 (784)
T ss_pred HHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 221 11 11111223447999999999999999999999998765
No 259
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=95.79 E-value=0.012 Score=56.56 Aligned_cols=41 Identities=24% Similarity=0.357 Sum_probs=35.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr 200 (473)
++++.++|.||+||||+...+...+ +...|..+|.+.+...
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~l~~~~ivNyG~~Mle~A~ 45 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKELVKHKIVNYGDLMLEIAK 45 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHHHhhceeeeHhHHHHHHHH
Confidence 5799999999999999999999999 7887888898877543
No 260
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.77 E-value=0.007 Score=52.60 Aligned_cols=23 Identities=48% Similarity=0.653 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+++|.|+||+||||++..++..+
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~ 23 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNI 23 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998876
No 261
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.76 E-value=0.012 Score=54.70 Aligned_cols=26 Identities=35% Similarity=0.465 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+++|+|+||+|+||+|++..|...+.
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 45789999999999999999999875
No 262
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=95.76 E-value=0.0076 Score=51.68 Aligned_cols=25 Identities=28% Similarity=0.578 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+++|.|++|+|||+++..++..+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~ 28 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQL 28 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHh
Confidence 3589999999999999999999987
No 263
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.76 E-value=0.015 Score=63.37 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=27.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..++|+|++|+||||+|+.||+.+..
T Consensus 32 ~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c 62 (504)
T PRK14963 32 QGRLGHAYLFSGPRGVGKTTTARLIAMAVNC 62 (504)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHhc
Confidence 4456788999999999999999999999864
No 264
>KOG3062 consensus RNA polymerase II elongator associated protein [General function prediction only]
Probab=95.75 E-value=0.033 Score=55.87 Aligned_cols=81 Identities=21% Similarity=0.427 Sum_probs=50.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e 236 (473)
+|+|+|.|+|||||.|..|...|. ..+++.+|.- .+... +..|.++. ..+.+..
T Consensus 3 LVvi~G~P~SGKstrA~~L~~~l~~~~~K~~v~ii~des----lg~~~---------ns~y~~s~--------~EK~lRg 61 (281)
T KOG3062|consen 3 LVVICGLPCSGKSTRAVELREALKERGTKQSVRIIDDES----LGIEK---------NSNYGDSQ--------AEKALRG 61 (281)
T ss_pred eEEEeCCCCCCchhHHHHHHHHHHhhcccceEEEechhh----cCCCC---------cccccccH--------HHHHHHH
Confidence 688999999999999999998872 2344444433 11111 01121110 0112334
Q ss_pred HHHHHHHHHHhCCCcEEEEcccCCccc
Q 011994 237 GLAGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 237 gL~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
.|...+++.|..+.-||+|.-..-.+|
T Consensus 62 ~L~S~v~R~Lsk~~iVI~DslNyIKGf 88 (281)
T KOG3062|consen 62 KLRSAVDRSLSKGDIVIVDSLNYIKGF 88 (281)
T ss_pred HHHHHHHhhcccCcEEEEecccccccc
Confidence 467788889999999999987754444
No 265
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=95.75 E-value=0.023 Score=58.47 Aligned_cols=31 Identities=26% Similarity=0.351 Sum_probs=27.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..+-.+|+.||||.||||+|..+|..+|...
T Consensus 50 e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~ 80 (332)
T COG2255 50 EALDHVLLFGPPGLGKTTLAHIIANELGVNL 80 (332)
T ss_pred CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCe
Confidence 3455899999999999999999999998754
No 266
>PRK08116 hypothetical protein; Validated
Probab=95.75 E-value=0.025 Score=56.67 Aligned_cols=30 Identities=27% Similarity=0.503 Sum_probs=24.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V 189 (473)
+.-++|.|++|+|||.||..++..+ |.+.+
T Consensus 114 ~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~ 146 (268)
T PRK08116 114 NVGLLLWGSVGTGKTYLAACIANELIEKGVPVI 146 (268)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHcCCeEE
Confidence 3468999999999999999999986 55543
No 267
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.74 E-value=0.0062 Score=61.91 Aligned_cols=36 Identities=25% Similarity=0.458 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC---C-CeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN---L-PNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg---~-~~Vi~tD~ir~ 197 (473)
+|.|+|.+||||||++..|+..++ . ..++..|.++.
T Consensus 1 IIgItG~SGSGKTTv~~~l~~~l~~~g~~v~vI~~D~yyr 40 (277)
T cd02029 1 VIAVTGSSGAGTTTVKRAFEHIFAREGIHPAVVEGDSFHR 40 (277)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhcCCceEEEecccccc
Confidence 588999999999999999998773 3 34556666654
No 268
>PHA02575 1 deoxynucleoside monophosphate kinase; Provisional
Probab=95.73 E-value=0.014 Score=57.94 Aligned_cols=40 Identities=23% Similarity=0.262 Sum_probs=33.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCe-EEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPN-VLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~-Vi~tD~ir~~Lr~ 201 (473)
++|.|+|.+||||||+|+.+. ..|.++ +..+|-+++.|+-
T Consensus 1 miI~i~G~~gsGKstva~~~~-~~g~~~~~~~~d~ik~~l~~ 41 (227)
T PHA02575 1 MLIAISGKKRSGKDTVADFII-ENYNAVKYQLADPIKEILAI 41 (227)
T ss_pred CEEEEeCCCCCCHHHHHHHHH-hcCCcEEEehhHHHHHHHHH
Confidence 489999999999999999885 467666 7789999988764
No 269
>PHA02244 ATPase-like protein
Probab=95.73 E-value=0.016 Score=61.36 Aligned_cols=39 Identities=28% Similarity=0.470 Sum_probs=31.0
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcch
Q 011994 153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTD 193 (473)
Q Consensus 153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD 193 (473)
++...+.| |+|.|++|||||++|..||..+|.+++...+
T Consensus 114 r~l~~~~P--VLL~GppGtGKTtLA~aLA~~lg~pfv~In~ 152 (383)
T PHA02244 114 KIVNANIP--VFLKGGAGSGKNHIAEQIAEALDLDFYFMNA 152 (383)
T ss_pred HHHhcCCC--EEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 33344545 6789999999999999999999999875543
No 270
>PRK07933 thymidylate kinase; Validated
Probab=95.71 E-value=0.063 Score=51.86 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++|.|-|.-||||||+++.|++.|
T Consensus 1 ~~IviEG~dGsGKST~~~~L~~~L 24 (213)
T PRK07933 1 MLIAIEGVDGAGKRTLTEALRAAL 24 (213)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998
No 271
>PLN03025 replication factor C subunit; Provisional
Probab=95.70 E-value=0.013 Score=59.34 Aligned_cols=23 Identities=30% Similarity=0.465 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|+||+||||+|..+|+.+
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999999987
No 272
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.70 E-value=0.017 Score=62.99 Aligned_cols=32 Identities=41% Similarity=0.440 Sum_probs=28.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.++..
T Consensus 34 ~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~ 65 (509)
T PRK14958 34 QQYLHHAYLFTGTRGVGKTTISRILAKCLNCE 65 (509)
T ss_pred hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 44567789999999999999999999999764
No 273
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.69 E-value=0.016 Score=63.07 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.+++.
T Consensus 31 ~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~ 62 (491)
T PRK14964 31 LNKIPQSILLVGASGVGKTTCARIISLCLNCS 62 (491)
T ss_pred cCCCCceEEEECCCCccHHHHHHHHHHHHcCc
Confidence 44557789999999999999999999988653
No 274
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.68 E-value=0.011 Score=55.03 Aligned_cols=33 Identities=27% Similarity=0.412 Sum_probs=26.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.-|+|+|++|+||||+|..|.. .|... +++|.+
T Consensus 15 ~gvLi~G~sG~GKStlal~L~~-~g~~l-vaDD~v 47 (149)
T cd01918 15 IGVLITGPSGIGKSELALELIK-RGHRL-VADDRV 47 (149)
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeE-EECCEE
Confidence 4689999999999999999876 47665 477743
No 275
>PF13189 Cytidylate_kin2: Cytidylate kinase-like family; PDB: 3FDI_A.
Probab=95.67 E-value=0.036 Score=51.95 Aligned_cols=38 Identities=24% Similarity=0.364 Sum_probs=29.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
||.|.|..|||++++|..||++||++++. .+.+.+...
T Consensus 1 IITIsr~~Gsgg~~Ia~~LA~~Lg~~~~d-~~ii~~~a~ 38 (179)
T PF13189_consen 1 IITISRQYGSGGREIAERLAEKLGYPYYD-REIIEEAAK 38 (179)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHCT--EE--HHHHHHCT-
T ss_pred CEEECCCCCCChHHHHHHHHHHcCCccCC-HHHHHHHHH
Confidence 68999999999999999999999999874 477776544
No 276
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.66 E-value=0.022 Score=63.80 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.=||+.|||||||||+|+.||..-++.++
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne~~~nFl 497 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANEAGMNFL 497 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhhhcCCee
Confidence 46788999999999999999999999988765
No 277
>PF02223 Thymidylate_kin: Thymidylate kinase; InterPro: IPR018094 Thymidylate kinase (2.7.4.9 from EC; dTMP kinase) catalyzes the phosphorylation of thymidine 5'-monophosphate (dTMP) to form thymidine 5'-diphosphate (dTDP) in the presence of ATP and magnesium: ATP + thymidine 5'-phosphate = ADP + thymidine 5'-diphosphate Thymidylate kinase is an ubiquitous enzyme of about 25 Kd and is important in the dTTP synthesis pathway for DNA synthesis. The function of dTMP kinase in eukaryotes comes from the study of a cell cycle mutant, cdc8, in Saccharomyces cerevisiae. Structural and functional analyses suggest that the cDNA codes for authentic human dTMP kinase. The mRNA levels and enzyme activities corresponded to cell cycle progression and cell growth stages[]. ; GO: 0004798 thymidylate kinase activity, 0005524 ATP binding, 0006233 dTDP biosynthetic process; PDB: 2PLR_B 1NMX_A 1NN0_A 2XX3_A 1NN3_A 1E9F_A 1E2Q_A 1E2D_A 1E9A_A 1E99_A ....
Probab=95.65 E-value=0.042 Score=50.81 Aligned_cols=79 Identities=28% Similarity=0.354 Sum_probs=44.6
Q ss_pred EEcCCCCcHHHHHHHHHHhc---CCCeEE----c----chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994 165 VCGTACVGKSTIATQLAQRL---NLPNVL----Q----TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (473)
Q Consensus 165 I~G~~GsGKSTlA~~LA~~L---g~~~Vi----~----tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~ 233 (473)
|=|..||||||+++.|+++| |+..+. . .+.+++.+..... + ++.....-|...
T Consensus 1 ~EGiDGsGKtT~~~~L~~~l~~~~~~~~~~~~~~~~~~g~~ir~~l~~~~~--~-----------~~~~~~~l~~a~--- 64 (186)
T PF02223_consen 1 FEGIDGSGKTTQIRLLAEALKEKGYKVIITFPPGSTPIGELIRELLRSESE--L-----------SPEAEALLFAAD--- 64 (186)
T ss_dssp EEESTTSSHHHHHHHHHHHHHHTTEEEEEEESSTSSHHHHHHHHHHHTSST--C-----------GHHHHHHHHHHH---
T ss_pred CCCCCCCCHHHHHHHHHHHHHHcCCcccccCCCCCChHHHHHHHHHhcccC--C-----------CHHHHHHHHHHH---
Confidence 45999999999999999998 443222 1 1344444431110 0 011111222211
Q ss_pred hHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994 234 VRKGLAGDLKKAMKDGKPIIIEGIHL 259 (473)
Q Consensus 234 V~egL~~~IekaL~eG~sVIIEGvhL 259 (473)
....+...+..++..|..||.|-.++
T Consensus 65 r~~~~~~~I~~~l~~g~~VI~DRy~~ 90 (186)
T PF02223_consen 65 RAWHLARVIRPALKRGKIVICDRYIY 90 (186)
T ss_dssp HHHHHHHTHHHHHHTTSEEEEESEHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEechhH
Confidence 11234456778899999999987544
No 278
>PRK12377 putative replication protein; Provisional
Probab=95.65 E-value=0.019 Score=57.23 Aligned_cols=24 Identities=25% Similarity=0.462 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++|.|++|+|||+||..++..+
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l 125 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRL 125 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999999988
No 279
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.62 E-value=0.016 Score=56.59 Aligned_cols=26 Identities=15% Similarity=0.190 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+..++|+|++|||||+++..++..+.
T Consensus 45 ~~~l~l~Gp~G~GKThLl~a~~~~~~ 70 (235)
T PRK08084 45 SGYIYLWSREGAGRSHLLHAACAELS 70 (235)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34789999999999999999998663
No 280
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=95.62 E-value=0.014 Score=63.83 Aligned_cols=33 Identities=30% Similarity=0.357 Sum_probs=28.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..+.|..+||+|++|+||||+|+.||+.++...
T Consensus 39 ~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~ 71 (507)
T PRK06645 39 NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSA 71 (507)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 445677899999999999999999999998753
No 281
>CHL00176 ftsH cell division protein; Validated
Probab=95.61 E-value=0.016 Score=65.06 Aligned_cols=33 Identities=24% Similarity=0.462 Sum_probs=29.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|.-|+|.|+||+|||++|+.||..++.+++.
T Consensus 214 ~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~ 246 (638)
T CHL00176 214 KIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFS 246 (638)
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCeee
Confidence 457789999999999999999999999988764
No 282
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.60 E-value=0.011 Score=56.25 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|+|+|++||||||+...|...+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 789999999999999999887774
No 283
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.027 Score=59.43 Aligned_cols=32 Identities=22% Similarity=0.364 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|.=||+.||||+|||.+|++.|.+.+..++
T Consensus 183 ~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFI 214 (406)
T COG1222 183 DPPKGVLLYGPPGTGKTLLAKAVANQTDATFI 214 (406)
T ss_pred CCCCceEeeCCCCCcHHHHHHHHHhccCceEE
Confidence 45778999999999999999999999997765
No 284
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.58 E-value=0.012 Score=61.36 Aligned_cols=30 Identities=37% Similarity=0.537 Sum_probs=28.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQ 191 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~ 191 (473)
.|++.||.|||||.||+.||+.|+.|+.++
T Consensus 99 NILLiGPTGsGKTlLAqTLAk~LnVPFaiA 128 (408)
T COG1219 99 NILLIGPTGSGKTLLAQTLAKILNVPFAIA 128 (408)
T ss_pred cEEEECCCCCcHHHHHHHHHHHhCCCeeec
Confidence 799999999999999999999999998764
No 285
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.57 E-value=0.012 Score=64.67 Aligned_cols=30 Identities=27% Similarity=0.436 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
-.+++|+||+||||||+.+.|+..+|+.++
T Consensus 110 ~~iLLltGPsGcGKSTtvkvLskelg~~~~ 139 (634)
T KOG1970|consen 110 SRILLLTGPSGCGKSTTVKVLSKELGYQLI 139 (634)
T ss_pred ceEEEEeCCCCCCchhHHHHHHHhhCceee
Confidence 459999999999999999999999998754
No 286
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.55 E-value=0.025 Score=63.96 Aligned_cols=32 Identities=22% Similarity=0.309 Sum_probs=28.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..|+|.|+||+||||+|+.||..++.+++
T Consensus 210 ~~~~giLL~GppGtGKT~laraia~~~~~~~i 241 (733)
T TIGR01243 210 EPPKGVLLYGPPGTGKTLLAKAVANEAGAYFI 241 (733)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhCCeEE
Confidence 45678999999999999999999999987765
No 287
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=95.54 E-value=0.015 Score=46.06 Aligned_cols=31 Identities=42% Similarity=0.535 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEEcc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPNVLQT 192 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~t 192 (473)
+++++|..|+||||++..|+..+ |.+.++.+
T Consensus 1 ~~~~~g~~G~Gktt~~~~l~~~l~~~g~~v~~~~ 34 (99)
T cd01983 1 VIVVTGKGGVGKTTLAANLAAALAKRGKRVLLID 34 (99)
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEC
Confidence 47899999999999999999988 66655444
No 288
>PRK06526 transposase; Provisional
Probab=95.54 E-value=0.016 Score=57.68 Aligned_cols=25 Identities=24% Similarity=0.316 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..++|+|++|+|||++|..|+..+
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a 122 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRA 122 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHH
Confidence 4578999999999999999998765
No 289
>COG1072 CoaA Panthothenate kinase [Coenzyme metabolism]
Probab=95.53 E-value=0.031 Score=56.98 Aligned_cols=30 Identities=40% Similarity=0.577 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
....|.||.|+|++|+||||+|+.|+..+.
T Consensus 78 ~~~~pfIIgiaGsvavGKST~ar~L~~ll~ 107 (283)
T COG1072 78 NQQRPFIIGIAGSVAVGKSTTARILQALLS 107 (283)
T ss_pred CCCCCEEEEeccCccccHHHHHHHHHHHHh
Confidence 456799999999999999999999998773
No 290
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=95.52 E-value=0.011 Score=55.28 Aligned_cols=23 Identities=30% Similarity=0.567 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|+|+|.||+||||+..++.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 38999999999999999999988
No 291
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=95.52 E-value=0.034 Score=53.14 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..++|+|++|+|||++|..++..+
T Consensus 42 ~~~~~l~G~~G~GKT~La~ai~~~~ 66 (227)
T PRK08903 42 DRFFYLWGEAGSGRSHLLQALVADA 66 (227)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999999999876
No 292
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.49 E-value=0.024 Score=62.15 Aligned_cols=31 Identities=45% Similarity=0.551 Sum_probs=27.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||+|++|+||||+|+.||+.+++
T Consensus 34 ~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 64 (527)
T PRK14969 34 QQRLHHAYLFTGTRGVGKTTLARILAKSLNC 64 (527)
T ss_pred cCCCCEEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3456778899999999999999999999965
No 293
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=95.49 E-value=0.026 Score=54.67 Aligned_cols=26 Identities=35% Similarity=0.539 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.+++|.|++|+||||+++.++..+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45789999999999999999999876
No 294
>TIGR01526 nadR_NMN_Atrans nicotinamide-nucleotide adenylyltransferase, NadR type. E. coli NadR has also been found to regulate the import of its substrate, nicotinamide ribonucleotide, but it is not known if the other members of this model share that activity.
Probab=95.49 E-value=0.014 Score=59.98 Aligned_cols=30 Identities=27% Similarity=0.396 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|+|.|++|+|||||+..|+..+|.+++.
T Consensus 163 ~~~~~~G~~~~gkstl~~~l~~~~~~~~v~ 192 (325)
T TIGR01526 163 KTVAILGGESTGKSTLVNKLAAVFNTTSAW 192 (325)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCCCEEe
Confidence 378999999999999999999999998753
No 295
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.48 E-value=0.017 Score=63.68 Aligned_cols=31 Identities=42% Similarity=0.492 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||+|++|+||||+|+.||+.++.
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c 64 (546)
T PRK14957 34 TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNC 64 (546)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 3455678999999999999999999998864
No 296
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=95.48 E-value=0.0088 Score=54.75 Aligned_cols=40 Identities=30% Similarity=0.361 Sum_probs=24.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE--E-cchhHHHHHhh
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNV--L-QTDMVYELLRT 201 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V--i-~tD~ir~~Lr~ 201 (473)
.|||-|.||+||||+|+.||..+|..+. - ..|..-.-+.+
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G 43 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILG 43 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHE
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCccccee
Confidence 3799999999999999999999987643 1 23666555554
No 297
>KOG3308 consensus Uncharacterized protein of the uridine kinase family [Nucleotide transport and metabolism]
Probab=95.47 E-value=0.013 Score=57.70 Aligned_cols=39 Identities=23% Similarity=0.370 Sum_probs=31.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+-.||-|.|.+++||||||..|.+.++-..+++-|.+++
T Consensus 3 K~~ivgiSG~TnsGKTTLak~l~~~f~~~~lIhqDDFyK 41 (225)
T KOG3308|consen 3 KTLIVGISGCTNSGKTTLAKSLHRFFPGCSLIHQDDFYK 41 (225)
T ss_pred eEEEEEeecccCCCHhHHHHHHHHHccCCeeeccccccC
Confidence 346899999999999999999999996555566666654
No 298
>PF13479 AAA_24: AAA domain
Probab=95.46 E-value=0.013 Score=56.15 Aligned_cols=29 Identities=34% Similarity=0.584 Sum_probs=23.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ 191 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~ 191 (473)
+|..++|.|+||+||||+|..+ +-+.++.
T Consensus 2 ~~~~~lIyG~~G~GKTt~a~~~----~k~l~id 30 (213)
T PF13479_consen 2 KPIKILIYGPPGSGKTTLAASL----PKPLFID 30 (213)
T ss_pred CceEEEEECCCCCCHHHHHHhC----CCeEEEE
Confidence 5789999999999999999877 4444443
No 299
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=95.43 E-value=0.028 Score=59.13 Aligned_cols=95 Identities=24% Similarity=0.336 Sum_probs=56.2
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHH---HHH-----HHH--HHHHhcCCC-hhhHHHHHHHHHhhc-
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSD---LEA-----NLF--KLMERRGYG-EEYISRYRMMTRFHH- 156 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~e---Le~-----~v~--~lL~~~~yg-e~~a~rY~l~~~~~~- 156 (473)
|..+|..+.-.|.+|.....++...+...++..|...+ +.. .+. ......-|| ++.+. +++..|+.
T Consensus 3 ~~eYL~~~~~~p~~~~~A~~r~~~~I~~~G~~~i~~~~~~~~~rif~~~~~~~y~~f~~~~~G~~~~i~--~lV~~fk~A 80 (358)
T PF08298_consen 3 FAEYLELVKEDPSVAANAHQRLYDMIGEPGTEVIDTSEDPRLYRIFSNDTIKRYPFFEDEFYGMEETIE--RLVNYFKSA 80 (358)
T ss_pred HHHHHHHHHhCcHhhhhHHHHHHHHHhccCcEEEeccccceEEEecccccccccCCccccccCcHHHHH--HHHHHHHHH
Confidence 56788888888999998999998888877663222111 000 000 000100122 11122 12333321
Q ss_pred ----cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 ----QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ----~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+-.|+++.||.|+||||++..|.+.|.
T Consensus 81 A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~le 113 (358)
T PF08298_consen 81 AQGLEERKRILLLLGPVGGGKSSLAELLKRGLE 113 (358)
T ss_pred HhccCccceEEEEECCCCCCHHHHHHHHHHHhh
Confidence 12236999999999999999999998774
No 300
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=95.43 E-value=0.024 Score=63.26 Aligned_cols=32 Identities=22% Similarity=0.419 Sum_probs=27.7
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
...+.|..+||.|++|+||||+|..+|+.+..
T Consensus 33 ~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C 64 (605)
T PRK05896 33 LNNKLTHAYIFSGPRGIGKTSIAKIFAKAINC 64 (605)
T ss_pred HcCCCCceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34456778999999999999999999999965
No 301
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=95.41 E-value=0.023 Score=63.89 Aligned_cols=31 Identities=45% Similarity=0.492 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||.|++|+||||+|+.||+.++.
T Consensus 34 ~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 34 LGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 4456778999999999999999999999965
No 302
>PRK13976 thymidylate kinase; Provisional
Probab=95.37 E-value=0.073 Score=51.52 Aligned_cols=50 Identities=6% Similarity=0.019 Sum_probs=32.2
Q ss_pred hHHHHhhHHHHHHHHhhhccCCceEeeecCCCccch---HHHHHHHHHHHHHHhh
Q 011994 408 KDELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQT---LDWLHGYLLQCIEKGI 459 (473)
Q Consensus 408 ~~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~t---ld~lH~~ll~~i~~~~ 459 (473)
...++++++..=..|.. ..+...+-|+++.-.++ ++-+|..+++.|..-+
T Consensus 151 ~~~~l~~v~~~Y~~l~~--~~~~~~~~id~~~~~~~~~~~e~v~~~i~~~i~~~~ 203 (209)
T PRK13976 151 DLEFYDKVRKGFREIVI--KNPHRCHVITCIDAKDNIEDINSVHLEIVKLLHAVT 203 (209)
T ss_pred cHHHHHHHHHHHHHHHH--hCCCCeEEEECCCCccCcCCHHHHHHHHHHHHHHHH
Confidence 36777766665444443 33334556666543456 9999999999887654
No 303
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.35 E-value=0.013 Score=66.36 Aligned_cols=30 Identities=30% Similarity=0.571 Sum_probs=28.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|+|+||+||-||||||+.+|+.-|+.+|-
T Consensus 327 KilLL~GppGlGKTTLAHViAkqaGYsVvE 356 (877)
T KOG1969|consen 327 KILLLCGPPGLGKTTLAHVIAKQAGYSVVE 356 (877)
T ss_pred ceEEeecCCCCChhHHHHHHHHhcCceEEE
Confidence 599999999999999999999999998764
No 304
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.028 Score=62.92 Aligned_cols=31 Identities=42% Similarity=0.540 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||+|++|+||||+|+.||+.|++
T Consensus 34 ~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC 64 (618)
T PRK14951 34 QQRLHHAYLFTGTRGVGKTTVSRILAKSLNC 64 (618)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 4456788999999999999999999999976
No 305
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.31 E-value=0.028 Score=62.47 Aligned_cols=31 Identities=32% Similarity=0.390 Sum_probs=27.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||+|++|+||||+|..||+.++.
T Consensus 31 ~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c 61 (584)
T PRK14952 31 AGRINHAYLFSGPRGCGKTSSARILARSLNC 61 (584)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4456778999999999999999999998874
No 306
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=95.28 E-value=0.014 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=18.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.+|.||||+||||++..+...+
T Consensus 18 ~~~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 18 GITLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp E-EEEE-STTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHHHHHh
Confidence 378999999999998777777665
No 307
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.27 E-value=0.029 Score=63.28 Aligned_cols=32 Identities=41% Similarity=0.522 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.|++.
T Consensus 34 ~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~ 65 (700)
T PRK12323 34 QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCT 65 (700)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 45567789999999999999999999999873
No 308
>PF13173 AAA_14: AAA domain
Probab=95.24 E-value=0.03 Score=49.12 Aligned_cols=25 Identities=40% Similarity=0.579 Sum_probs=22.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+++|.|+.||||||++..+++.+.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc
Confidence 3789999999999999999998875
No 309
>PTZ00202 tuzin; Provisional
Probab=95.23 E-value=0.17 Score=55.37 Aligned_cols=43 Identities=19% Similarity=0.431 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc-----chhHHHHHhh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ-----TDMVYELLRT 201 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~-----tD~ir~~Lr~ 201 (473)
.|.++.|.|++||||||+++.+...++...++. .|.++..++.
T Consensus 285 ~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNprg~eElLr~LL~A 332 (550)
T PTZ00202 285 HPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVRGTEDTLRSVVKA 332 (550)
T ss_pred CceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCCCHHHHHHHHHHH
Confidence 467999999999999999999999998654431 3555555544
No 310
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=95.22 E-value=0.018 Score=54.76 Aligned_cols=27 Identities=19% Similarity=0.266 Sum_probs=23.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
++.++.|+|++||||||++..|...|.
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l~ 31 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPALC 31 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHHh
Confidence 455899999999999999999997773
No 311
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.22 E-value=0.0097 Score=62.70 Aligned_cols=34 Identities=26% Similarity=0.343 Sum_probs=29.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.-|++.||||||||-+|.++|.+.|..++.
T Consensus 124 l~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fIn 157 (386)
T KOG0737|consen 124 LRPPKGILLYGPPGTGKTMLAKAIAKEAGANFIN 157 (386)
T ss_pred ccCCccceecCCCCchHHHHHHHHHHHcCCCcce
Confidence 3568899999999999999999999999877653
No 312
>PF13245 AAA_19: Part of AAA domain
Probab=95.21 E-value=0.02 Score=47.14 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=17.2
Q ss_pred eEEEEEcCCCCcHHH-HHHHHHHhc
Q 011994 161 LVILVCGTACVGKST-IATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKST-lA~~LA~~L 184 (473)
.+.+|.|+||+|||+ ++..++..+
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 467889999999994 445444444
No 313
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=95.20 E-value=0.032 Score=63.22 Aligned_cols=32 Identities=44% Similarity=0.512 Sum_probs=28.2
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||+.|++.
T Consensus 34 ~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~ 65 (709)
T PRK08691 34 EGRLHHAYLLTGTRGVGKTTIARILAKSLNCE 65 (709)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 34557789999999999999999999999865
No 314
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=95.19 E-value=0.014 Score=55.48 Aligned_cols=34 Identities=29% Similarity=0.377 Sum_probs=28.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVY 196 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir 196 (473)
+|+-.+++||||||+|..|+.-+| +.+| +.|.+.
T Consensus 1 vlvPIAtiGCGKTTva~aL~~LFg~wgHv-QnDnI~ 35 (168)
T PF08303_consen 1 VLVPIATIGCGKTTVALALSNLFGEWGHV-QNDNIT 35 (168)
T ss_pred CEeeecCCCcCHHHHHHHHHHHcCCCCcc-ccCCCC
Confidence 356678999999999999999999 9986 666553
No 315
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=95.17 E-value=0.025 Score=64.31 Aligned_cols=34 Identities=21% Similarity=0.220 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
...+...++|.|+||+||||+|+.++..++..++
T Consensus 48 ~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~ 81 (725)
T PRK13341 48 KADRVGSLILYGPPGVGKTTLARIIANHTRAHFS 81 (725)
T ss_pred hcCCCceEEEECCCCCCHHHHHHHHHHHhcCcce
Confidence 3444446799999999999999999998876543
No 316
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.17 E-value=0.017 Score=58.04 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|.|+|++||||||+++.|+..++
T Consensus 1 iigI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 1 IIGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred CEEEECCCCCCHHHHHHHHHHhhC
Confidence 478999999999999999998874
No 317
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.16 E-value=0.033 Score=62.32 Aligned_cols=33 Identities=30% Similarity=0.333 Sum_probs=28.8
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
...+.|..+||.|++|+||||+|..||+.+++.
T Consensus 33 ~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~ 65 (620)
T PRK14954 33 RMDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQ 65 (620)
T ss_pred HcCCCCeeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344667789999999999999999999999875
No 318
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.15 E-value=0.018 Score=61.36 Aligned_cols=39 Identities=31% Similarity=0.367 Sum_probs=32.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC------CeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNL------PNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~------~~Vi~tD~ir~ 197 (473)
...+|.++||.|+||||+..+||.++.+ --++.+|++|=
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRI 246 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRI 246 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchh
Confidence 3679999999999999999999998851 23457898883
No 319
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=95.15 E-value=0.029 Score=52.18 Aligned_cols=31 Identities=32% Similarity=0.386 Sum_probs=27.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||.|++|+||||+|..+++.+..
T Consensus 10 ~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~ 40 (188)
T TIGR00678 10 KGRLAHAYLFAGPEGVGKELLALALAKALLC 40 (188)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4456789999999999999999999998854
No 320
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.11 E-value=0.038 Score=57.26 Aligned_cols=24 Identities=25% Similarity=0.408 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++|.|++|+|||.||..+|..+
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l 207 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKEL 207 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHH
Confidence 468999999999999999999987
No 321
>PRK09183 transposase/IS protein; Provisional
Probab=95.06 E-value=0.035 Score=55.26 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...++|.|++|+|||++|..|+..+
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a 126 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEA 126 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHH
Confidence 3478899999999999999997654
No 322
>PRK14490 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MobB/MobA; Provisional
Probab=95.06 E-value=0.02 Score=59.64 Aligned_cols=28 Identities=39% Similarity=0.631 Sum_probs=25.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+|.+|.|+|.+||||||++..|..+|.
T Consensus 3 ~~~~~i~i~G~~gsGKTTl~~~l~~~l~ 30 (369)
T PRK14490 3 FHPFEIAFCGYSGSGKTTLITALVRRLS 30 (369)
T ss_pred CCCEEEEEEeCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999998885
No 323
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=95.04 E-value=0.038 Score=61.62 Aligned_cols=32 Identities=34% Similarity=0.479 Sum_probs=28.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|.-+||+|++|+||||+|+.||+.|++.
T Consensus 42 ~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~ 73 (598)
T PRK09111 42 TGRIAQAFMLTGVRGVGKTTTARILARALNYE 73 (598)
T ss_pred cCCCCceEEEECCCCCCHHHHHHHHHHhhCcC
Confidence 44567789999999999999999999999764
No 324
>PF08477 Miro: Miro-like protein; InterPro: IPR013684 Mitochondrial Rho proteins (Miro-1, Q8IXI2 from SWISSPROT and Miro-2, Q8IXI1 from SWISSPROT) are atypical Rho GTPases. They have a unique domain organisation, with tandem GTP-binding domains and two EF hand domains (IPR002048 from INTERPRO), that may bind calcium. They are also larger than classical small GTPases. It has been proposed that they are involved in mitochondrial homeostasis and apoptosis []. ; GO: 0005525 GTP binding, 0007264 small GTPase mediated signal transduction, 0005622 intracellular; PDB: 2IWR_A 2BMJ_A 3IHW_A 2ZEJ_A 3D6T_B 3DPU_A.
Probab=95.02 E-value=0.022 Score=48.05 Aligned_cols=23 Identities=30% Similarity=0.429 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHhcC
Q 011994 163 ILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
|++.|.+|+|||||.+.|+....
T Consensus 2 I~V~G~~g~GKTsLi~~l~~~~~ 24 (119)
T PF08477_consen 2 IVVLGDSGVGKTSLIRRLCGGEF 24 (119)
T ss_dssp EEEECSTTSSHHHHHHHHHHSS-
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 79999999999999999986553
No 325
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=95.01 E-value=0.033 Score=56.22 Aligned_cols=32 Identities=31% Similarity=0.445 Sum_probs=27.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..++|.|++|+||||+|..|++.+...
T Consensus 32 ~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~ 63 (355)
T TIGR02397 32 NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQ 63 (355)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34457789999999999999999999998643
No 326
>PRK08939 primosomal protein DnaI; Reviewed
Probab=94.99 E-value=0.16 Score=52.05 Aligned_cols=39 Identities=23% Similarity=0.320 Sum_probs=29.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE--EcchhHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV--LQTDMVYEL 198 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V--i~tD~ir~~ 198 (473)
..-++|.|++|+|||.|+..||..+ |++.+ ...+.+.+.
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~l 199 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIREL 199 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHH
Confidence 4568999999999999999999988 66533 234444443
No 327
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=94.99 E-value=0.038 Score=62.99 Aligned_cols=34 Identities=24% Similarity=0.441 Sum_probs=31.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=+|++||||||||.||+++|..-|+|++.
T Consensus 341 AKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~s 374 (774)
T KOG0731|consen 341 AKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFS 374 (774)
T ss_pred CcCcCceEEECCCCCcHHHHHHHHhcccCCceee
Confidence 4568889999999999999999999999999875
No 328
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.97 E-value=0.056 Score=57.84 Aligned_cols=42 Identities=24% Similarity=0.261 Sum_probs=34.6
Q ss_pred HHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 149 RMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 149 ~l~~~~~~~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|-..|..-++|. =||+.||||+|||.||+++|...|..++.
T Consensus 233 ~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFN 275 (491)
T KOG0738|consen 233 WMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFN 275 (491)
T ss_pred hhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEE
Confidence 4555666777786 68999999999999999999999977654
No 329
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=94.96 E-value=0.019 Score=52.29 Aligned_cols=23 Identities=30% Similarity=0.303 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+++|.|+||+|||+++..++...
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~ 23 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAG 23 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHH
Confidence 47999999999999999887643
No 330
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.96 E-value=0.031 Score=55.15 Aligned_cols=31 Identities=39% Similarity=0.513 Sum_probs=27.0
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
+.+.|..+||.|+||+||||+|..||+.++.
T Consensus 20 ~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~ 50 (325)
T COG0470 20 SGRLPHALLFYGPPGVGKTTAALALAKELLC 50 (325)
T ss_pred cCCCCceeeeeCCCCCCHHHHHHHHHHHHhC
Confidence 3456778999999999999999999999974
No 331
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=94.95 E-value=0.056 Score=50.59 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+++|+|++||||||+.+.|...+.
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcC
Confidence 4899999999999999999987663
No 332
>PRK07952 DNA replication protein DnaC; Validated
Probab=94.93 E-value=0.11 Score=51.69 Aligned_cols=24 Identities=21% Similarity=0.434 Sum_probs=22.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++|.|++|+|||+|+..++..+
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l 123 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNEL 123 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHH
Confidence 368999999999999999999988
No 333
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.93 E-value=0.033 Score=57.26 Aligned_cols=31 Identities=35% Similarity=0.620 Sum_probs=26.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..++|+|++|+||||+|..+++.++.
T Consensus 35 ~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 35 NNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455779999999999999999999998865
No 334
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.93 E-value=0.039 Score=56.07 Aligned_cols=28 Identities=18% Similarity=0.407 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...|..++|.|+||+|||++++.++..+
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999998765
No 335
>CHL00095 clpC Clp protease ATP binding subunit
Probab=94.89 E-value=0.089 Score=60.47 Aligned_cols=29 Identities=28% Similarity=0.505 Sum_probs=25.0
Q ss_pred ccCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 156 HQRVPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 156 ~~~~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...+|. .++|+||+|+|||++|..||+.+
T Consensus 534 ~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l 563 (821)
T CHL00095 534 NPNRPIASFLFSGPTGVGKTELTKALASYF 563 (821)
T ss_pred CCCCCceEEEEECCCCCcHHHHHHHHHHHh
Confidence 345675 57899999999999999999987
No 336
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.037 Score=57.60 Aligned_cols=51 Identities=27% Similarity=0.372 Sum_probs=40.6
Q ss_pred HHHHHhhccCCCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE--EcchhHHHHH
Q 011994 149 RMMTRFHHQRVPL-VILVCGTACVGKSTIATQLAQRLNLPNV--LQTDMVYELL 199 (473)
Q Consensus 149 ~l~~~~~~~~~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V--i~tD~ir~~L 199 (473)
++-..|...|+|. -||+.||||+|||.||..+|..-+-.++ .++|.+-+-|
T Consensus 154 KFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 154 KFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred cchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 4556677888886 6999999999999999999999985443 3678876654
No 337
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.88 E-value=0.031 Score=60.20 Aligned_cols=30 Identities=30% Similarity=0.395 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+.|||.||||+|||.+|+.||.+-|+.|-+
T Consensus 385 RNilfyGPPGTGKTm~ArelAr~SGlDYA~ 414 (630)
T KOG0742|consen 385 RNILFYGPPGTGKTMFARELARHSGLDYAI 414 (630)
T ss_pred hheeeeCCCCCCchHHHHHHHhhcCCceeh
Confidence 489999999999999999999999998754
No 338
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=94.87 E-value=0.063 Score=49.92 Aligned_cols=23 Identities=26% Similarity=0.339 Sum_probs=20.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|+|+|.+||||||+...|...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 58999999999999999988764
No 339
>PRK13695 putative NTPase; Provisional
Probab=94.85 E-value=0.025 Score=52.08 Aligned_cols=24 Identities=33% Similarity=0.519 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.|+|.|.+|+||||++..++..+
T Consensus 1 ~~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 1 MKIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999987765
No 340
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.84 E-value=0.022 Score=63.54 Aligned_cols=33 Identities=24% Similarity=0.433 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|.=||++||||||||.+|+++|..-|+.++.
T Consensus 543 ~~PsGvLL~GPPGCGKTLlAKAVANEag~NFis 575 (802)
T KOG0733|consen 543 DAPSGVLLCGPPGCGKTLLAKAVANEAGANFIS 575 (802)
T ss_pred CCCCceEEeCCCCccHHHHHHHHhhhccCceEe
Confidence 457889999999999999999999999887764
No 341
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=94.84 E-value=0.024 Score=51.51 Aligned_cols=23 Identities=35% Similarity=0.540 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|+|+|+.+|||||+++.|...|
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l 24 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINEL 24 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999999998877
No 342
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=94.80 E-value=0.021 Score=49.64 Aligned_cols=24 Identities=33% Similarity=0.444 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++||||||+.+.|+..+
T Consensus 12 ~~~~i~G~nGsGKStLl~~l~g~~ 35 (137)
T PF00005_consen 12 EIVAIVGPNGSGKSTLLKALAGLL 35 (137)
T ss_dssp SEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEEccCCCccccceeeecccc
Confidence 489999999999999999998765
No 343
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=94.78 E-value=0.032 Score=49.29 Aligned_cols=21 Identities=29% Similarity=0.588 Sum_probs=19.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA 181 (473)
.++.|.|++||||||++..|.
T Consensus 16 e~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 16 VGVLITGDSGIGKTELALELI 36 (107)
T ss_pred EEEEEEcCCCCCHHHHHHHhh
Confidence 478999999999999999987
No 344
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=94.78 E-value=0.049 Score=56.85 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=29.9
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
...+...+.|..++|.|++|+||+|+|..+|+.+..
T Consensus 36 ~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Llc 71 (351)
T PRK09112 36 AQAYREGKLHHALLFEGPEGIGKATLAFHLANHILS 71 (351)
T ss_pred HHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHcC
Confidence 333445666889999999999999999999999865
No 345
>PRK13768 GTPase; Provisional
Probab=94.77 E-value=0.027 Score=55.74 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++++|+|.|++|+||||++..++..+
T Consensus 1 ~~~~i~v~G~~G~GKTt~~~~~~~~l 26 (253)
T PRK13768 1 MMYIVFFLGTAGSGKTTLTKALSDWL 26 (253)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHH
Confidence 36799999999999999999888766
No 346
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=94.73 E-value=0.05 Score=55.91 Aligned_cols=28 Identities=29% Similarity=0.494 Sum_probs=24.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...|..++|.|+||+|||++++.++..+
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999876
No 347
>COG0125 Tmk Thymidylate kinase [Nucleotide transport and metabolism]
Probab=94.73 E-value=0.24 Score=48.43 Aligned_cols=86 Identities=28% Similarity=0.344 Sum_probs=51.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf 227 (473)
+.+.|.|-|.=|+||||++..|+..| |+.++.. ...+|+.+.... .++ ++.....-|
T Consensus 2 ~g~fI~iEGiDGaGKTT~~~~L~~~l~~~g~~v~~trEP~~~~ige~iR~~ll~~~-~~~-----------~~~~e~lLf 69 (208)
T COG0125 2 KGMFIVIEGIDGAGKTTQAELLKERLEERGIKVVLTREPGGTPIGEKIRELLLNGE-EKL-----------SPKAEALLF 69 (208)
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCCCChHHHHHHHHHcCCc-cCC-----------CHHHHHHHH
Confidence 35789999999999999999999988 5554441 234444332110 000 111111222
Q ss_pred HhcchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEGIHL 259 (473)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL 259 (473)
... -...+...+..++.+|.-||.|-...
T Consensus 70 aad---R~~h~~~~i~pal~~g~vVI~DRy~~ 98 (208)
T COG0125 70 AAD---RAQHLEEVIKPALKEGKVVICDRYVD 98 (208)
T ss_pred HHH---HHHHHHHHHHHhhcCCCEEEECCccc
Confidence 211 11235677788899998888876443
No 348
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=94.72 E-value=0.035 Score=56.53 Aligned_cols=28 Identities=29% Similarity=0.348 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+|+|+|++||||||+++.|. .+|+..+
T Consensus 7 ~~i~i~G~~GsGKtt~~~~l~-~~g~~~~ 34 (288)
T PRK05416 7 RLVIVTGLSGAGKSVALRALE-DLGYYCV 34 (288)
T ss_pred eEEEEECCCCCcHHHHHHHHH-HcCCeEE
Confidence 489999999999999999996 5687655
No 349
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=94.70 E-value=0.052 Score=62.23 Aligned_cols=32 Identities=34% Similarity=0.425 Sum_probs=27.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.+..+||+|++|+||||+|+.|++.|++.
T Consensus 34 ~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe 65 (830)
T PRK07003 34 GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCE 65 (830)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34557788999999999999999999999864
No 350
>TIGR00101 ureG urease accessory protein UreG. This model represents UreG, a GTP hydrolase that acts in the assembly of the nickel metallocenter of urease. It is found only in urease-positive species, although some urease-positive species (e.g. Bacillus subtilis) lack this protein. A similar protein, hypB, is an accessory protein for expression of hydrogenase, which also uses nickel.
Probab=94.69 E-value=0.033 Score=53.32 Aligned_cols=26 Identities=35% Similarity=0.521 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
|..|.|+|++|+||||+...|...+.
T Consensus 1 ~~~i~i~G~~GsGKTTll~~l~~~l~ 26 (199)
T TIGR00101 1 PLKIGVAGPVGSGKTALIEALTRALR 26 (199)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhhC
Confidence 67899999999999999999988763
No 351
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=94.69 E-value=0.03 Score=57.02 Aligned_cols=28 Identities=43% Similarity=0.604 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+++-|+||+|||++|+.+|+.+|.+++
T Consensus 45 ~vll~G~PG~gKT~la~~lA~~l~~~~~ 72 (329)
T COG0714 45 HVLLEGPPGVGKTLLARALARALGLPFV 72 (329)
T ss_pred CEEEECCCCccHHHHHHHHHHHhCCCeE
Confidence 5799999999999999999999997654
No 352
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.68 E-value=0.053 Score=59.97 Aligned_cols=32 Identities=34% Similarity=0.422 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.+..+||+|++|+||||+|+.||+.++..
T Consensus 34 ~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~ 65 (585)
T PRK14950 34 EGRVAHAYLFTGPRGVGKTSTARILAKAVNCT 65 (585)
T ss_pred hCCCceEEEEECCCCCCHHHHHHHHHHHhcCC
Confidence 34556789999999999999999999998753
No 353
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=94.65 E-value=0.052 Score=61.81 Aligned_cols=32 Identities=25% Similarity=0.420 Sum_probs=28.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||+|++|+||||+|+.||..++..
T Consensus 36 ~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~ 67 (725)
T PRK07133 36 SNKISHAYLFSGPRGTGKTSVAKIFANALNCS 67 (725)
T ss_pred cCCCCeEEEEECCCCCcHHHHHHHHHHHhccc
Confidence 44567889999999999999999999999765
No 354
>PRK05973 replicative DNA helicase; Provisional
Probab=94.64 E-value=0.16 Score=50.49 Aligned_cols=28 Identities=18% Similarity=0.214 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPN 188 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~ 188 (473)
.+++|+|.||+|||+++..++... |.+.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~v 95 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTG 95 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 489999999999999999887644 6543
No 355
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=94.63 E-value=0.056 Score=59.82 Aligned_cols=33 Identities=24% Similarity=0.356 Sum_probs=28.4
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
...+.|..+||+|++|+||||+|+.||+.++..
T Consensus 33 ~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~ 65 (563)
T PRK06647 33 ESNKIANAYIFSGPRGVGKTSSARAFARCLNCV 65 (563)
T ss_pred HcCCCCeEEEEECCCCCCHHHHHHHHHHhhccc
Confidence 344567789999999999999999999999754
No 356
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=94.62 E-value=0.042 Score=53.52 Aligned_cols=26 Identities=31% Similarity=0.479 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....+|.|.|++|+||||+|..++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccc
Confidence 45679999999999999999999977
No 357
>PRK08181 transposase; Validated
Probab=94.60 E-value=0.049 Score=54.96 Aligned_cols=24 Identities=29% Similarity=0.397 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++|+|++|+|||.||..++..+
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a 130 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLAL 130 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHH
Confidence 469999999999999999998654
No 358
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=94.59 E-value=0.038 Score=60.03 Aligned_cols=23 Identities=43% Similarity=0.530 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
=|||.|+||+||||+|+.||.-+
T Consensus 265 GILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 265 GILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred ceEEecCCCCChhHHHHHHHHHH
Confidence 48999999999999999999877
No 359
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.59 E-value=0.1 Score=60.42 Aligned_cols=28 Identities=46% Similarity=0.657 Sum_probs=25.3
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+++|. +++|+||+|+|||.+|..||..|
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l 620 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELL 620 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45676 78999999999999999999988
No 360
>cd04163 Era Era subfamily. Era (E. coli Ras-like protein) is a multifunctional GTPase found in all bacteria except some eubacteria. It binds to the 16S ribosomal RNA (rRNA) of the 30S subunit and appears to play a role in the assembly of the 30S subunit, possibly by chaperoning the 16S rRNA. It also contacts several assembly elements of the 30S subunit. Era couples cell growth with cytokinesis and plays a role in cell division and energy metabolism. Homologs have also been found in eukaryotes. Era contains two domains: the N-terminal GTPase domain and a C-terminal domain KH domain that is critical for RNA binding. Both domains are important for Era function. Era is functionally able to compensate for deletion of RbfA, a cold-shock adaptation protein that is required for efficient processing of the 16S rRNA.
Probab=94.58 E-value=0.034 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|.+.|++|+||||+...|..
T Consensus 3 ~~~i~~~G~~g~GKttl~~~l~~ 25 (168)
T cd04163 3 SGFVAIVGRPNVGKSTLLNALVG 25 (168)
T ss_pred eeEEEEECCCCCCHHHHHHHHhC
Confidence 35799999999999999999864
No 361
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.54 E-value=0.11 Score=60.22 Aligned_cols=28 Identities=29% Similarity=0.488 Sum_probs=24.4
Q ss_pred cCCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+|. .++|+|++|+|||++|+.|+..+
T Consensus 594 ~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l 622 (857)
T PRK10865 594 PNRPIGSFLFLGPTGVGKTELCKALANFM 622 (857)
T ss_pred CCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 45564 78999999999999999999877
No 362
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=94.54 E-value=0.051 Score=53.75 Aligned_cols=24 Identities=38% Similarity=0.490 Sum_probs=21.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++|.|++|+||||+++.++..+.
T Consensus 40 ~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 40 HLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHc
Confidence 469999999999999999999873
No 363
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=94.53 E-value=0.064 Score=59.23 Aligned_cols=31 Identities=23% Similarity=0.369 Sum_probs=26.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.+..+||+|++|+||||+|+.||+.++.
T Consensus 34 ~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c 64 (559)
T PRK05563 34 QGKISHAYLFSGPRGTGKTSAAKIFAKAVNC 64 (559)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 3455778999999999999999999999864
No 364
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=94.52 E-value=0.044 Score=49.51 Aligned_cols=29 Identities=34% Similarity=0.425 Sum_probs=24.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
...+|++.|.-|+||||+++.|++.+|+.
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~lg~~ 42 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARALGID 42 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHTT--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 34699999999999999999999999875
No 365
>PRK06893 DNA replication initiation factor; Validated
Probab=94.50 E-value=0.032 Score=54.19 Aligned_cols=23 Identities=17% Similarity=0.361 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|+|+||+|||+++..+|..+
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~ 63 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHY 63 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999875
No 366
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=94.49 E-value=0.048 Score=55.27 Aligned_cols=36 Identities=31% Similarity=0.446 Sum_probs=27.5
Q ss_pred HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++..++ +.++..+|-|+|+||+|||||...|...+
T Consensus 17 ~ll~~l~~~~g~a~~iGiTG~PGaGKSTli~~l~~~~ 53 (266)
T PF03308_consen 17 ELLKRLYPHTGRAHVIGITGPPGAGKSTLIDALIREL 53 (266)
T ss_dssp HHHHHHGGGTT-SEEEEEEE-TTSSHHHHHHHHHHHH
T ss_pred HHHHHHHhhcCCceEEEeeCCCCCcHHHHHHHHHHHH
Confidence 3444444 45677899999999999999999999877
No 367
>TIGR00073 hypB hydrogenase accessory protein HypB. HypB is implicated in insertion of nickel into the large subunit of NiFe hydrogenases.
Probab=94.48 E-value=0.044 Score=52.08 Aligned_cols=28 Identities=21% Similarity=0.297 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..|.+|.|+|++|+||||+...|...++
T Consensus 20 ~~~~~i~~~G~~gsGKTTli~~l~~~~~ 47 (207)
T TIGR00073 20 HGLVVLNFMSSPGSGKTTLIEKLIDNLK 47 (207)
T ss_pred cCcEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 3578999999999999999999998764
No 368
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.47 E-value=0.072 Score=58.93 Aligned_cols=29 Identities=28% Similarity=0.499 Sum_probs=27.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+-+++.|+||+|||+||..+|..-++|+|
T Consensus 539 vSvLl~Gp~~sGKTaLAA~iA~~S~FPFv 567 (744)
T KOG0741|consen 539 VSVLLEGPPGSGKTALAAKIALSSDFPFV 567 (744)
T ss_pred eEEEEecCCCCChHHHHHHHHhhcCCCeE
Confidence 46999999999999999999999999986
No 369
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=94.47 E-value=0.053 Score=57.59 Aligned_cols=31 Identities=32% Similarity=0.520 Sum_probs=25.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC--CCeEE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN--LPNVL 190 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi 190 (473)
-+.|||.|+||+|||.+|-.+|+.|| .|++.
T Consensus 50 Gr~iLiaGppGtGKTAlA~~ia~eLG~~~PF~~ 82 (398)
T PF06068_consen 50 GRAILIAGPPGTGKTALAMAIAKELGEDVPFVS 82 (398)
T ss_dssp T-EEEEEE-TTSSHHHHHHHHHHHCTTTS-EEE
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHhCCCCCeeE
Confidence 46899999999999999999999998 66654
No 370
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=94.46 E-value=0.04 Score=52.23 Aligned_cols=26 Identities=38% Similarity=0.367 Sum_probs=23.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..+++|+|+||+||||++..+|...
T Consensus 18 ~g~i~~i~G~~GsGKT~l~~~~a~~~ 43 (218)
T cd01394 18 RGTVTQVYGPPGTGKTNIAIQLAVET 43 (218)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999999765
No 371
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.43 E-value=0.07 Score=59.10 Aligned_cols=31 Identities=39% Similarity=0.474 Sum_probs=26.9
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+.|..+||+|++|+||||+|..||+.++.
T Consensus 34 ~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c 64 (576)
T PRK14965 34 TGRVAHAFLFTGARGVGKTSTARILAKALNC 64 (576)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHhhcC
Confidence 3455778999999999999999999999864
No 372
>COG1162 Predicted GTPases [General function prediction only]
Probab=94.42 E-value=0.083 Score=54.46 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.+.+|+|.||+|||||...|.-...
T Consensus 164 ~~~svl~GqSGVGKSSLiN~L~p~~~ 189 (301)
T COG1162 164 GKITVLLGQSGVGKSTLINALLPELN 189 (301)
T ss_pred CCeEEEECCCCCcHHHHHHhhCchhh
Confidence 34889999999999999999976544
No 373
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.40 E-value=0.052 Score=59.04 Aligned_cols=32 Identities=41% Similarity=0.442 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.+..++|+|++|+||||+|+.+|..++..
T Consensus 34 ~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~ 65 (486)
T PRK14953 34 LQRVSHAYIFAGPRGTGKTTIARILAKVLNCL 65 (486)
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCc
Confidence 34456788999999999999999999999753
No 374
>PF13476 AAA_23: AAA domain; PDB: 3AV0_B 3AUY_B 3AUX_A 2O5V_A 3QG5_B 3QF7_A 3THO_A.
Probab=94.38 E-value=0.033 Score=50.58 Aligned_cols=28 Identities=29% Similarity=0.310 Sum_probs=23.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.|-+.+|+|++|+||||+...|...|+-
T Consensus 18 ~~g~~vi~G~Ng~GKStil~ai~~~L~~ 45 (202)
T PF13476_consen 18 SPGLNVIYGPNGSGKSTILEAIRYALGG 45 (202)
T ss_dssp -SEEEEEEESTTSSHHHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4569999999999999999999877743
No 375
>TIGR00750 lao LAO/AO transport system ATPase. Mutations have also been found that do not phosphorylate the periplasmic binding proteins, yet still allow transport. The ATPase activity of this protein seems to be necessary, however.
Probab=94.36 E-value=0.056 Score=54.68 Aligned_cols=36 Identities=25% Similarity=0.325 Sum_probs=27.8
Q ss_pred HHHHHhh-ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 149 RMMTRFH-HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 149 ~l~~~~~-~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++..+. ..+.+.+|.|.|++|+||||++..|+..+
T Consensus 22 ~~~~~~~~~~~~~~~i~i~G~~G~GKttl~~~l~~~~ 58 (300)
T TIGR00750 22 QLLDRIMPYTGNAHRVGITGTPGAGKSTLLEALGMEL 58 (300)
T ss_pred HHHHhCCcccCCceEEEEECCCCCCHHHHHHHHHHHH
Confidence 3444443 34557799999999999999999998766
No 376
>PHA02624 large T antigen; Provisional
Probab=94.36 E-value=0.21 Score=56.17 Aligned_cols=29 Identities=24% Similarity=0.174 Sum_probs=25.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
-.+|+|.|++|+||||++..|.+.||-..
T Consensus 431 k~~il~~GPpnTGKTtf~~sLl~~L~G~v 459 (647)
T PHA02624 431 RRYWLFKGPVNSGKTTLAAALLDLCGGKS 459 (647)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeE
Confidence 35999999999999999999999995443
No 377
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=94.35 E-value=0.13 Score=51.27 Aligned_cols=40 Identities=20% Similarity=0.386 Sum_probs=30.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE--cchhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL--QTDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi--~tD~ir~~ 198 (473)
++.-++|.|+||+|||.||..|+.++ |++++. ..|.+.+.
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~L 148 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKL 148 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHH
Confidence 45579999999999999999999887 555433 35666654
No 378
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=94.34 E-value=0.064 Score=61.92 Aligned_cols=32 Identities=31% Similarity=0.366 Sum_probs=27.7
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.+..+||.|++|+||||+|+.||+.|++.
T Consensus 33 ~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~ 64 (824)
T PRK07764 33 SGRINHAYLFSGPRGCGKTSSARILARSLNCV 64 (824)
T ss_pred hCCCCceEEEECCCCCCHHHHHHHHHHHhCcc
Confidence 34556779999999999999999999999763
No 379
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=94.33 E-value=0.079 Score=56.20 Aligned_cols=29 Identities=24% Similarity=0.292 Sum_probs=26.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
.|.-+||.|++|+||||+|..||..+...
T Consensus 35 l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~ 63 (394)
T PRK07940 35 MTHAWLFTGPPGSGRSVAARAFAAALQCT 63 (394)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCC
Confidence 57789999999999999999999998764
No 380
>PRK04296 thymidine kinase; Provisional
Probab=94.31 E-value=0.038 Score=52.23 Aligned_cols=24 Identities=29% Similarity=0.225 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+++++|++|+||||++..++.++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~ 26 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNY 26 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999887
No 381
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.30 E-value=0.064 Score=50.54 Aligned_cols=26 Identities=19% Similarity=0.312 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...-++|.|++|+|||.+|..++.++
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~ 71 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEA 71 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHh
Confidence 34679999999999999999998766
No 382
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.30 E-value=0.072 Score=55.87 Aligned_cols=34 Identities=26% Similarity=0.392 Sum_probs=28.9
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.+...+.|.-+||.|++|+||+|+|..+|+.+-.
T Consensus 34 ~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc 67 (365)
T PRK07471 34 AYRSGRLHHAWLIGGPQGIGKATLAYRMARFLLA 67 (365)
T ss_pred HHHcCCCCceEEEECCCCCCHHHHHHHHHHHHhC
Confidence 3345667888999999999999999999999854
No 383
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=94.30 E-value=0.037 Score=52.35 Aligned_cols=24 Identities=25% Similarity=0.267 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 31 ~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 31 EFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCc
Confidence 489999999999999999998654
No 384
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=94.29 E-value=0.034 Score=51.36 Aligned_cols=23 Identities=30% Similarity=0.543 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|.|+|++|+||||++..|...+
T Consensus 1 vi~i~G~~gsGKTtl~~~l~~~l 23 (155)
T TIGR00176 1 VLQIVGPKNSGKTTLIERLVKAL 23 (155)
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999876
No 385
>PF03477 ATP-cone: ATP cone domain; InterPro: IPR005144 The ATP-cone is an evolutionarily mobile, ATP-binding regulatory domain which is found in a variety of proteins including ribonucleotide reductases, phosphoglycerate kinases and transcriptional regulators []. In ribonucleotide reductase protein R1 (P28903 from SWISSPROT) from Escherichia coli this domain is located at the N terminus, and is composed mostly of helices []. It forms part of the allosteric effector region and contains the general allosteric activity site in a cleft located at the tip of the N-terminal region []. This site binds either ATP (activating) or dATP (inhibitory), with the base bound in a hydrophobic pocket and the phosphates bound to basic residues. Substrate binding to this site is thought to affect enzyme activity by altering the relative positions of the two subunits of ribonucleotide reductase.; PDB: 2XO4_A 1RLR_A 7R1R_B 5R1R_A 2XO5_B 2XAW_A 2R1R_C 2XAY_B 2X0X_C 2XAZ_A ....
Probab=94.25 E-value=0.23 Score=41.22 Aligned_cols=75 Identities=16% Similarity=0.227 Sum_probs=59.3
Q ss_pred ccccchHHHHHHHHHHcC-----CChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHh
Q 011994 80 HYYVFSRFLLSRMLTVTK-----IPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRF 154 (473)
Q Consensus 80 h~ypFSRglLsR~L~~ag-----Va~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~ 154 (473)
...||+..-|.+.|..++ +....+..|+.++...|.+.+...|+.+++.+.+...|.+.++.+ +++.|.+.+.+
T Consensus 9 ~~e~F~~~KI~~~i~~a~~~~~~~~~~~~~~i~~~V~~~l~~~~~~~is~~eI~~~v~~~L~~~~~~~-~a~~yi~yr~~ 87 (90)
T PF03477_consen 9 RVEPFDREKIVRAIEKACEASRELSEEDAEEIASEVENKLYDSGKEEISTEEIQDIVENALMEEGFYD-VARAYILYRNI 87 (90)
T ss_dssp SEEES-HHHHHHHHHTTCTTTSTTTST-HHHHHHHHHTC-ST----TEEHHHHHHHHHHHHHTSTTHH-HHHHHHHHHHH
T ss_pred cEeeecHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhccCCCeeHHHHHHHHHHHHHcCChHH-HHHHHHHHHHH
Confidence 569999999999999998 789999999999999999888889999999999999998866444 57778877766
Q ss_pred h
Q 011994 155 H 155 (473)
Q Consensus 155 ~ 155 (473)
+
T Consensus 88 r 88 (90)
T PF03477_consen 88 R 88 (90)
T ss_dssp H
T ss_pred H
Confidence 5
No 386
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=94.23 E-value=0.12 Score=55.11 Aligned_cols=119 Identities=18% Similarity=0.167 Sum_probs=63.3
Q ss_pred HHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC---eEE------cchhHHHHHhhCCCCCCCCCccccccccChHH
Q 011994 152 TRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP---NVL------QTDMVYELLRTSTDAPLSSSPVWARNFSSSEE 222 (473)
Q Consensus 152 ~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~---~Vi------~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~Ee 222 (473)
+.+.++.+-.-+++-|+||+||||||+.|+..-.-+ +|. .+..+|..+..... .. ....+..--.-+
T Consensus 154 rs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~aq~-~~---~l~krkTilFiD 229 (554)
T KOG2028|consen 154 RSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQAQN-EK---SLTKRKTILFID 229 (554)
T ss_pred HHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHHHH-HH---hhhcceeEEEeH
Confidence 333344443357789999999999999999866433 332 12334443322100 00 000000000001
Q ss_pred HHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCccccc-ccccCCCCCccccccC
Q 011994 223 LVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPSIYL-MDDDSKAPATTTEKTN 281 (473)
Q Consensus 223 lI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pel~l-~~~~~r~~~~~~~k~~ 281 (473)
-++.|. +..++.+...++.|.-+.|.++.-+|.|-+ ..+..|=.-.+++|..
T Consensus 230 EiHRFN-------ksQQD~fLP~VE~G~I~lIGATTENPSFqln~aLlSRC~VfvLekL~ 282 (554)
T KOG2028|consen 230 EIHRFN-------KSQQDTFLPHVENGDITLIGATTENPSFQLNAALLSRCRVFVLEKLP 282 (554)
T ss_pred Hhhhhh-------hhhhhcccceeccCceEEEecccCCCccchhHHHHhccceeEeccCC
Confidence 123332 233444556667888788999999999953 4455555556666644
No 387
>cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.22 E-value=0.04 Score=51.93 Aligned_cols=25 Identities=16% Similarity=0.166 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|||||||.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (210)
T cd03269 26 GEIFGLLGPNGAGKTTTIRMILGII 50 (210)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 388
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=94.21 E-value=0.04 Score=51.84 Aligned_cols=25 Identities=20% Similarity=0.306 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|||||||.+.|+..+
T Consensus 27 G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 27 GEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 389
>TIGR00231 small_GTP small GTP-binding protein domain. This model recognizes a large number of small GTP-binding proteins and related domains in larger proteins. Note that the alpha chains of heterotrimeric G proteins are larger proteins in which the NKXD motif is separated from the GxxxxGK[ST] motif (P-loop) by a long insert and are not easily detected by this model.
Probab=94.17 E-value=0.05 Score=45.90 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..|++.|.+|+||||+...|....
T Consensus 2 ~ki~~~G~~~~GKstl~~~l~~~~ 25 (161)
T TIGR00231 2 IKIVIVGDPNVGKSTLLNRLLGNK 25 (161)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999987543
No 390
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.15 E-value=0.052 Score=50.99 Aligned_cols=25 Identities=24% Similarity=0.300 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-.+++|+|+||+|||+++..++...
T Consensus 12 g~i~~i~G~~GsGKT~l~~~~~~~~ 36 (209)
T TIGR02237 12 GTITQIYGPPGSGKTNICMILAVNA 36 (209)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999998654
No 391
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=94.11 E-value=0.043 Score=51.76 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 29 ~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 29 EFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 392
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=94.08 E-value=0.043 Score=52.77 Aligned_cols=24 Identities=21% Similarity=0.338 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 29 e~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 29 EFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999998644
No 393
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=94.08 E-value=0.044 Score=50.93 Aligned_cols=24 Identities=33% Similarity=0.390 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 19 e~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 19 EVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998644
No 394
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.07 E-value=0.043 Score=52.58 Aligned_cols=24 Identities=25% Similarity=0.302 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 28 EFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999998654
No 395
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=94.07 E-value=0.044 Score=51.54 Aligned_cols=24 Identities=33% Similarity=0.414 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 28 ~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 28 EFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 396
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=94.07 E-value=0.043 Score=51.89 Aligned_cols=24 Identities=21% Similarity=0.271 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 30 e~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 30 EMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 397
>cd04154 Arl2 Arl2 subfamily. Arl2 (Arf-like 2) GTPases are members of the Arf family that bind GDP and GTP with very low affinity. Unlike most Arf family proteins, Arl2 is not myristoylated at its N-terminal helix. The protein PDE-delta, first identified in photoreceptor rod cells, binds specifically to Arl2 and is structurally very similar to RhoGDI. Despite the high structural similarity between Arl2 and Rho proteins and between PDE-delta and RhoGDI, the interactions between the GTPases and their effectors are very different. In its GTP bound form, Arl2 interacts with the protein Binder of Arl2 (BART), and the complex is believed to play a role in mitochondrial adenine nucleotide transport. In its GDP bound form, Arl2 interacts with tubulin- folding Cofactor D; this interaction is believed to play a role in regulation of microtubule dynamics that impact the cytoskeleton, cell division, and cytokinesis.
Probab=94.05 E-value=0.06 Score=48.68 Aligned_cols=26 Identities=31% Similarity=0.411 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+..|++.|.+|+||||+...|...
T Consensus 12 ~~~~kv~ivG~~~~GKTsL~~~l~~~ 37 (173)
T cd04154 12 EREMRILILGLDNAGKTTILKKLLGE 37 (173)
T ss_pred CCccEEEEECCCCCCHHHHHHHHccC
Confidence 34567899999999999999988754
No 398
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=94.03 E-value=0.053 Score=50.53 Aligned_cols=24 Identities=33% Similarity=0.376 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+|.|+|.+||||||++..|...+
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l 25 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPAL 25 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 379999999999999999999887
No 399
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=94.03 E-value=0.044 Score=51.90 Aligned_cols=24 Identities=21% Similarity=0.350 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 27 EIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 400
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=94.01 E-value=0.062 Score=55.87 Aligned_cols=27 Identities=30% Similarity=0.345 Sum_probs=24.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
.+++|.||||+|||+.|..+|+.|+.+
T Consensus 58 p~~LFyGPpGTGKTStalafar~L~~~ 84 (346)
T KOG0989|consen 58 PHYLFYGPPGTGKTSTALAFARALNCE 84 (346)
T ss_pred ceEEeeCCCCCcHhHHHHHHHHHhcCc
Confidence 378999999999999999999999764
No 401
>cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.98 E-value=0.046 Score=52.49 Aligned_cols=24 Identities=25% Similarity=0.372 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (235)
T cd03261 27 EILAIIGPSGSGKSTLLRLIVGLL 50 (235)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 402
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=93.96 E-value=0.054 Score=58.60 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=27.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.||+.||+|+|||.||..||+-|+.|+++
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaI 256 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAI 256 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEE
Confidence 68999999999999999999999999887
No 403
>cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.96 E-value=0.043 Score=51.75 Aligned_cols=23 Identities=26% Similarity=0.262 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++.|.|++|+|||||.+.|+..+
T Consensus 27 ~~~i~G~nGsGKSTLl~~l~Gl~ 49 (211)
T cd03264 27 MYGLLGPNGAGKTTLMRILATLT 49 (211)
T ss_pred cEEEECCCCCCHHHHHHHHhCCC
Confidence 89999999999999999998644
No 404
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=93.95 E-value=0.047 Score=51.32 Aligned_cols=24 Identities=33% Similarity=0.447 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl~ 50 (205)
T cd03226 27 EIIALTGKNGAGKTTLAKILAGLI 50 (205)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 405
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.93 E-value=0.049 Score=51.44 Aligned_cols=24 Identities=21% Similarity=0.249 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 27 EFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998644
No 406
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=93.92 E-value=0.099 Score=52.86 Aligned_cols=34 Identities=21% Similarity=0.332 Sum_probs=28.7
Q ss_pred HhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 153 RFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 153 ~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.+...+.|..++|+|+.|+||+|+|..+|+.+..
T Consensus 19 ~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c 52 (313)
T PRK05564 19 SIIKNRFSHAHIIVGEDGIGKSLLAKEIALKILG 52 (313)
T ss_pred HHHcCCCCceEEeECCCCCCHHHHHHHHHHHHcC
Confidence 3345567889999999999999999999998854
No 407
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.92 E-value=0.049 Score=51.59 Aligned_cols=24 Identities=25% Similarity=0.285 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTGEL 52 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 408
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=93.89 E-value=0.05 Score=51.15 Aligned_cols=24 Identities=25% Similarity=0.303 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++||||||+.+.|+..+
T Consensus 27 ~~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03262 27 EVVVIIGPSGSGKSTLLRCINLLE 50 (213)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 409
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.05 Score=52.08 Aligned_cols=24 Identities=21% Similarity=0.209 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~G~~ 55 (233)
T cd03258 32 EIFGIIGRSGAGKSTLIRCINGLE 55 (233)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998655
No 410
>PRK06851 hypothetical protein; Provisional
Probab=93.87 E-value=0.073 Score=56.19 Aligned_cols=27 Identities=26% Similarity=0.299 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
....+++|.|+||+||||+...++..+
T Consensus 212 ~~~~~~~i~G~pG~GKstl~~~i~~~a 238 (367)
T PRK06851 212 GVKNRYFLKGRPGTGKSTMLKKIAKAA 238 (367)
T ss_pred ccceEEEEeCCCCCcHHHHHHHHHHHH
Confidence 345789999999999999999999877
No 411
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.87 E-value=0.05 Score=51.70 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 31 ~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 31 EFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998644
No 412
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=93.87 E-value=0.052 Score=50.80 Aligned_cols=24 Identities=21% Similarity=0.219 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 25 e~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 25 KMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 413
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=93.85 E-value=0.051 Score=51.78 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 27 e~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 27 EITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhc
Confidence 489999999999999999998765
No 414
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=93.85 E-value=0.12 Score=51.64 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|+|+|++||||||+...|...+.
T Consensus 82 lilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 82 IILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred EEEEECCCCCcHHHHHHHHHhhhC
Confidence 799999999999999998877663
No 415
>PRK12608 transcription termination factor Rho; Provisional
Probab=93.84 E-value=0.19 Score=53.45 Aligned_cols=23 Identities=22% Similarity=0.309 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|++|+||||+++.|++.+
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 57999999999999999999877
No 416
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=93.84 E-value=0.043 Score=52.39 Aligned_cols=34 Identities=26% Similarity=0.364 Sum_probs=26.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
+=|+|+|.+|+||||+|-.|.. .|... +++|.+.
T Consensus 19 ~GVLi~G~SG~GKS~lAl~Li~-rGh~l-vaDD~v~ 52 (171)
T PF07475_consen 19 VGVLITGPSGIGKSELALELIK-RGHRL-VADDRVE 52 (171)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH-TT-EE-EESSEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHH-CCCeE-EeCCEEE
Confidence 3589999999999999999986 46654 5777654
No 417
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=93.83 E-value=0.047 Score=59.13 Aligned_cols=26 Identities=35% Similarity=0.370 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..|++.|+||+|||++|+.||..++.
T Consensus 195 ~~iil~GppGtGKT~lA~~la~~l~~ 220 (459)
T PRK11331 195 KNIILQGPPGVGKTFVARRLAYLLTG 220 (459)
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhcC
Confidence 36788999999999999999998853
No 418
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.81 E-value=0.082 Score=56.90 Aligned_cols=32 Identities=31% Similarity=0.408 Sum_probs=27.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|..+||.|++|+||||+|..+|+.+...
T Consensus 35 ~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~ 66 (451)
T PRK06305 35 FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQ 66 (451)
T ss_pred cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCC
Confidence 34557789999999999999999999998654
No 419
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=93.80 E-value=0.048 Score=52.17 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (236)
T cd03219 27 EIHGLIGPNGAGKTTLFNLISGFL 50 (236)
T ss_pred cEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999998654
No 420
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=93.79 E-value=0.053 Score=46.12 Aligned_cols=20 Identities=35% Similarity=0.544 Sum_probs=18.8
Q ss_pred EEEEcCCCCcHHHHHHHHHH
Q 011994 163 ILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~ 182 (473)
|+|.|.+|+||||+...|..
T Consensus 2 V~iiG~~~~GKSTlin~l~~ 21 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTG 21 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHhc
Confidence 78999999999999999985
No 421
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.79 E-value=0.054 Score=51.52 Aligned_cols=25 Identities=24% Similarity=0.242 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 26 Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (220)
T cd03265 26 GEIFGLLGPNGAGKTTTIKMLTTLL 50 (220)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 422
>cd01895 EngA2 EngA2 subfamily. This CD represents the second GTPase domain of EngA and its orthologs, which are composed of two adjacent GTPase domains. Since the sequences of the two domains are more similar to each other than to other GTPases, it is likely that an ancient gene duplication, rather than a fusion of evolutionarily distinct GTPases, gave rise to this family. Although the exact function of these proteins has not been elucidated, studies have revealed that the E. coli EngA homolog, Der, and Neisseria gonorrhoeae EngA are essential for cell viability. A recent report suggests that E. coli Der functions in ribosome assembly and stability.
Probab=93.77 E-value=0.059 Score=47.04 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
|+.|++.|.+|+||||+...|...
T Consensus 2 ~~~i~i~G~~~~GKstli~~l~~~ 25 (174)
T cd01895 2 PIRIAIIGRPNVGKSSLVNALLGE 25 (174)
T ss_pred CcEEEEEcCCCCCHHHHHHHHhCc
Confidence 667999999999999999999654
No 423
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=93.75 E-value=0.05 Score=51.38 Aligned_cols=25 Identities=24% Similarity=0.312 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 25 Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 25 GEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred CCEEEEECCCCCCHHHHHHHHcCCC
Confidence 3489999999999999999997654
No 424
>COG0378 HypB Ni2+-binding GTPase involved in regulation of expression and maturation of urease and hydrogenase [Posttranslational modification, protein turnover, chaperones / Transcription]
Probab=93.74 E-value=0.066 Score=52.29 Aligned_cols=40 Identities=25% Similarity=0.346 Sum_probs=29.2
Q ss_pred cCCC-eEEEEEcCCCCcHHHHHHHHHHhcC--CC-eEEcchhHH
Q 011994 157 QRVP-LVILVCGTACVGKSTIATQLAQRLN--LP-NVLQTDMVY 196 (473)
Q Consensus 157 ~~~P-~iIlI~G~~GsGKSTlA~~LA~~Lg--~~-~Vi~tD~ir 196 (473)
..+| +.|-++|++|||||+|..++.+.|. ++ .|+-.|.+.
T Consensus 9 ~~~~~~~i~v~Gp~GSGKTaLie~~~~~L~~~~~~aVI~~Di~t 52 (202)
T COG0378 9 KNRPMLRIGVGGPPGSGKTALIEKTLRALKDEYKIAVITGDIYT 52 (202)
T ss_pred hcCceEEEEecCCCCcCHHHHHHHHHHHHHhhCCeEEEeceeec
Confidence 4567 7899999999999999999887773 22 233455544
No 425
>cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK. ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed.
Probab=93.74 E-value=0.056 Score=50.94 Aligned_cols=24 Identities=21% Similarity=0.256 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03301 27 EFVVLLGPSGCGKTTTLRMIAGLE 50 (213)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 426
>TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina.
Probab=93.73 E-value=0.055 Score=51.25 Aligned_cols=25 Identities=24% Similarity=0.287 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 31 G~~~~i~G~nGsGKSTLl~~i~G~~ 55 (221)
T TIGR02211 31 GEIVAIVGSSGSGKSTLLHLLGGLD 55 (221)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 427
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=93.73 E-value=0.057 Score=50.92 Aligned_cols=25 Identities=24% Similarity=0.344 Sum_probs=21.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+++|+|++|+|||||...|.....
T Consensus 36 k~~vl~G~SGvGKSSLiN~L~~~~~ 60 (161)
T PF03193_consen 36 KTSVLLGQSGVGKSSLINALLPEAK 60 (161)
T ss_dssp SEEEEECSTTSSHHHHHHHHHTSS-
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcc
Confidence 5899999999999999999977653
No 428
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=93.73 E-value=0.045 Score=51.65 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=20.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011994 163 ILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~L 184 (473)
|+|.|+|||||||+...+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 5899999999999999999875
No 429
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=93.72 E-value=0.058 Score=52.96 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..|+|+|++||||||+...|...+.
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred eEEEEECCCccccchHHHHHhhhcc
Confidence 5899999999999999999998884
No 430
>cd00879 Sar1 Sar1 subfamily. Sar1 is an essential component of COPII vesicle coats involved in export of cargo from the ER. The GTPase activity of Sar1 functions as a molecular switch to control protein-protein and protein-lipid interactions that direct vesicle budding from the ER. Activation of the GDP to the GTP-bound form of Sar1 involves the membrane-associated guanine nucleotide exchange factor (GEF) Sec12. Sar1 is unlike all Ras superfamily GTPases that use either myristoyl or prenyl groups to direct membrane association and function, in that Sar1 lacks such modification. Instead, Sar1 contains a unique nine-amino-acid N-terminal extension. This extension contains an evolutionarily conserved cluster of bulky hydrophobic amino acids, referred to as the Sar1-N-terminal activation recruitment (STAR) motif. The STAR motif mediates the recruitment of Sar1 to ER membranes and facilitates its interaction with mammalian Sec12 GEF leading to activation.
Probab=93.72 E-value=0.095 Score=47.87 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+...|+|.|++|+||||+...|..
T Consensus 18 ~~~ki~ilG~~~~GKStLi~~l~~ 41 (190)
T cd00879 18 KEAKILFLGLDNAGKTTLLHMLKD 41 (190)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhc
Confidence 345679999999999999999875
No 431
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=93.71 E-value=0.055 Score=53.00 Aligned_cols=25 Identities=28% Similarity=0.417 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..|+|.|+||+|||++|+.|..-|.
T Consensus 23 h~lLl~GppGtGKTmlA~~l~~lLP 47 (206)
T PF01078_consen 23 HHLLLIGPPGTGKTMLARRLPSLLP 47 (206)
T ss_dssp --EEEES-CCCTHHHHHHHHHHCS-
T ss_pred CCeEEECCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999998763
No 432
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=93.70 E-value=0.051 Score=50.38 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.|+|.|+.|||||||++.|-.
T Consensus 3 rimliG~~g~GKTTL~q~L~~ 23 (143)
T PF10662_consen 3 RIMLIGPSGSGKTTLAQALNG 23 (143)
T ss_pred eEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999998854
No 433
>TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE. Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity.
Probab=93.70 E-value=0.054 Score=51.72 Aligned_cols=25 Identities=36% Similarity=0.347 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--++.|.|++|||||||.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (230)
T TIGR03410 26 GEVTCVLGRNGVGKTTLLKTLMGLL 50 (230)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998655
No 434
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=93.69 E-value=0.053 Score=53.99 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|+|||||||||+.+.|. .|
T Consensus 29 evv~iiGpSGSGKSTlLRclN-~L 51 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLN-GL 51 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHH-CC
Confidence 489999999999999999885 45
No 435
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=93.69 E-value=0.11 Score=57.44 Aligned_cols=32 Identities=25% Similarity=0.308 Sum_probs=27.5
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
...+.|..+||+|++|+||||+|+.||+.+..
T Consensus 31 ~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c 62 (535)
T PRK08451 31 DNNRLAHAYLFSGLRGSGKTSSARIFARALVC 62 (535)
T ss_pred HcCCCCeeEEEECCCCCcHHHHHHHHHHHhcC
Confidence 34556788999999999999999999999853
No 436
>PRK13541 cytochrome c biogenesis protein CcmA; Provisional
Probab=93.67 E-value=0.058 Score=50.51 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 26 Ge~~~l~G~nGsGKSTLl~~l~G~~ 50 (195)
T PRK13541 26 SAITYIKGANGCGKSSLLRMIAGIM 50 (195)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998754
No 437
>cd04119 RJL RJL (RabJ-Like) subfamily. RJLs are found in many protists and as chimeras with C-terminal DNAJ domains in deuterostome metazoa. They are not found in plants, fungi, and protostome metazoa, suggesting a horizontal gene transfer between protists and deuterostome metazoa. RJLs lack any known membrane targeting signal and contain a degenerate phosphate/magnesium-binding 3 (PM3) motif, suggesting an impaired ability to hydrolyze GTP. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization.
Probab=93.67 E-value=0.061 Score=47.06 Aligned_cols=23 Identities=26% Similarity=0.395 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|+++|.+|+||||+..+|...-
T Consensus 2 ki~~vG~~~vGKTsli~~l~~~~ 24 (168)
T cd04119 2 KVISMGNSGVGKSCIIKRYCEGR 24 (168)
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999997643
No 438
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.06 Score=59.58 Aligned_cols=35 Identities=23% Similarity=0.438 Sum_probs=31.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQT 192 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~t 192 (473)
+-|.=||++||||+|||.||+++|-.-|.+++..+
T Consensus 335 KLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 335 KLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred cCCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 45888999999999999999999999999988754
No 439
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.66 E-value=0.077 Score=59.40 Aligned_cols=30 Identities=33% Similarity=0.400 Sum_probs=26.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+.+..+||.|++|+||||+|+.||+.|+..
T Consensus 36 rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~ 65 (620)
T PRK14948 36 RIAPAYLFTGPRGTGKTSSARILAKSLNCL 65 (620)
T ss_pred CCCceEEEECCCCCChHHHHHHHHHHhcCC
Confidence 345578999999999999999999999764
No 440
>PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional
Probab=93.66 E-value=0.058 Score=51.45 Aligned_cols=25 Identities=32% Similarity=0.238 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 36 Ge~~~i~G~nGsGKSTLl~~i~Gl~ 60 (228)
T PRK10584 36 GETIALIGESGSGKSTLLAILAGLD 60 (228)
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCC
Confidence 4589999999999999999998654
No 441
>PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional
Probab=93.66 E-value=0.058 Score=51.85 Aligned_cols=25 Identities=24% Similarity=0.259 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 35 Ge~~~l~G~nGsGKSTLl~~l~Gl~ 59 (233)
T PRK11629 35 GEMMAIVGSSGSGKSTLLHLLGGLD 59 (233)
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 442
>cd04159 Arl10_like Arl10-like subfamily. Arl9/Arl10 was identified from a human cancer-derived EST dataset. No functional information about the subfamily is available at the current time, but crystal structures of human Arl10b and Arl10c have been solved.
Probab=93.65 E-value=0.054 Score=46.46 Aligned_cols=21 Identities=29% Similarity=0.409 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011994 163 ILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~ 183 (473)
|.|+|++|+||||+...|...
T Consensus 2 i~i~G~~~~GKssl~~~l~~~ 22 (159)
T cd04159 2 ITLVGLQNSGKTTLVNVIAGG 22 (159)
T ss_pred EEEEcCCCCCHHHHHHHHccC
Confidence 689999999999999999653
No 443
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.64 E-value=0.058 Score=51.55 Aligned_cols=22 Identities=32% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+++|+|++|+||||+.+.++.
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 5899999999999999999974
No 444
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.63 E-value=0.058 Score=52.03 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 28 GELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 445
>cd04138 H_N_K_Ras_like H-Ras/N-Ras/K-Ras subfamily. H-Ras, N-Ras, and K-Ras4A/4B are the prototypical members of the Ras family. These isoforms generate distinct signal outputs despite interacting with a common set of activators and effectors, and are strongly associated with oncogenic progression in tumor initiation. Mutated versions of Ras that are insensitive to GAP stimulation (and are therefore constitutively active) are found in a significant fraction of human cancers. Many Ras guanine nucleotide exchange factors (GEFs) have been identified. They are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active (GTP-bound) Ras interacts with several effector proteins that stimulate a variety of diverse cytoplasmic signaling activities. Some are known to positively mediate the oncogenic properties of Ras, including Raf, phosphatidylinositol 3-kinase (PI3K), RalGEFs, and Tiam1.
Probab=93.62 E-value=0.061 Score=46.81 Aligned_cols=22 Identities=41% Similarity=0.602 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|+|.|.+|+||||+..+|...
T Consensus 3 ki~iiG~~~vGKTsl~~~~~~~ 24 (162)
T cd04138 3 KLVVVGAGGVGKSALTIQLIQN 24 (162)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999753
No 446
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.62 E-value=0.084 Score=59.23 Aligned_cols=31 Identities=45% Similarity=0.533 Sum_probs=27.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
.+.+..+||.|++|+||||+|..||+.++..
T Consensus 35 ~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~ 65 (624)
T PRK14959 35 NRVAPAYLFSGTRGVGKTTIARIFAKALNCE 65 (624)
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHhcccc
Confidence 3446789999999999999999999999764
No 447
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=93.62 E-value=0.059 Score=50.94 Aligned_cols=24 Identities=33% Similarity=0.257 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (218)
T cd03266 32 EVTGLLGPNGAGKTTTLRMLAGLL 55 (218)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 489999999999999999998654
No 448
>PRK13764 ATPase; Provisional
Probab=93.60 E-value=0.095 Score=58.59 Aligned_cols=25 Identities=40% Similarity=0.446 Sum_probs=22.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..|+|+|++||||||+++.|+..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999998874
No 449
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.60 E-value=0.062 Score=49.47 Aligned_cols=24 Identities=21% Similarity=0.230 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+||||+.+.|+..+
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998754
No 450
>cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF.
Probab=93.60 E-value=0.059 Score=51.13 Aligned_cols=24 Identities=29% Similarity=0.331 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G~~ 55 (228)
T cd03257 32 ETLGLVGESGSGKSTLARAILGLL 55 (228)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 451
>TIGR01978 sufC FeS assembly ATPase SufC. SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA.
Probab=93.58 E-value=0.059 Score=51.72 Aligned_cols=23 Identities=26% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|.|++|||||||.+.|+..
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~Gl 49 (243)
T TIGR01978 27 EIHAIMGPNGSGKSTLSKTIAGH 49 (243)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999865
No 452
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=93.58 E-value=0.068 Score=53.03 Aligned_cols=25 Identities=32% Similarity=0.335 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..+++|.|+||+||||+|.+++..
T Consensus 35 ~gs~~lI~G~pGtGKT~l~~qf~~~ 59 (259)
T TIGR03878 35 AYSVINITGVSDTGKSLMVEQFAVT 59 (259)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998764
No 453
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=93.58 E-value=0.06 Score=51.91 Aligned_cols=24 Identities=21% Similarity=0.259 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 29 ETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 454
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=93.57 E-value=0.062 Score=50.56 Aligned_cols=25 Identities=16% Similarity=0.117 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 26 G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 26 GEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCc
Confidence 3589999999999999999998644
No 455
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.57 E-value=0.064 Score=49.63 Aligned_cols=24 Identities=25% Similarity=0.279 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999998654
No 456
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=93.56 E-value=0.061 Score=51.75 Aligned_cols=25 Identities=24% Similarity=0.284 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 27 Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 27 GEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCc
Confidence 3489999999999999999998654
No 457
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=93.54 E-value=0.15 Score=52.27 Aligned_cols=43 Identities=23% Similarity=0.353 Sum_probs=33.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC--CeEEcchhHHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL--PNVLQTDMVYELL 199 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~--~~Vi~tD~ir~~L 199 (473)
-..|+=+++.||||||||.|+...|..... -.|..+.++.+.+
T Consensus 186 idpprgvllygppg~gktml~kava~~t~a~firvvgsefvqkyl 230 (408)
T KOG0727|consen 186 IDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQKYL 230 (408)
T ss_pred CCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHHHHh
Confidence 356888999999999999999999987754 3444666666544
No 458
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=93.52 E-value=0.084 Score=54.14 Aligned_cols=27 Identities=33% Similarity=0.443 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.-.+|-|+|.||+|||||...|...+
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l 128 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL 128 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 345789999999999999999998876
No 459
>COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism]
Probab=93.51 E-value=0.061 Score=54.06 Aligned_cols=24 Identities=25% Similarity=0.281 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-.+.|.|+|||||||+-+.+|--.
T Consensus 30 EfvsilGpSGcGKSTLLriiAGL~ 53 (248)
T COG1116 30 EFVAILGPSGCGKSTLLRLIAGLE 53 (248)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 378999999999999999998544
No 460
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=93.50 E-value=0.085 Score=42.46 Aligned_cols=23 Identities=35% Similarity=0.484 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+|.|++|+||||+..++..-|
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 79999999999999998876543
No 461
>PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional
Probab=93.49 E-value=0.064 Score=51.90 Aligned_cols=25 Identities=20% Similarity=0.221 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~G~~ 53 (250)
T PRK11264 29 GEVVAIIGPSGSGKTTLLRCINLLE 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3489999999999999999998654
No 462
>cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium.
Probab=93.48 E-value=0.064 Score=51.20 Aligned_cols=24 Identities=17% Similarity=0.187 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 27 e~~~l~G~nGsGKSTLl~~l~Gl~ 50 (232)
T cd03218 27 EIVGLLGPNGAGKTTTFYMIVGLV 50 (232)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 463
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.47 E-value=0.078 Score=59.44 Aligned_cols=32 Identities=25% Similarity=0.453 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|.-|+|.|+||+||||+++.|+..++.+++.
T Consensus 184 ~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~ 215 (644)
T PRK10733 184 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFT 215 (644)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45669999999999999999999999988764
No 464
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.47 E-value=0.064 Score=50.76 Aligned_cols=24 Identities=29% Similarity=0.238 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 24 e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 24 EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred eeEEEECCCCCCHHHHHHHHhCCC
Confidence 689999999999999999998654
No 465
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=93.47 E-value=0.23 Score=50.71 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..|+|+|++||||||++..|...+
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 378999999999999999999876
No 466
>cd00876 Ras Ras family. The Ras family of the Ras superfamily includes classical N-Ras, H-Ras, and K-Ras, as well as R-Ras, Rap, Ral, Rheb, Rhes, ARHI, RERG, Rin/Rit, RSR1, RRP22, Ras2, Ras-dva, and RGK proteins. Ras proteins regulate cell growth, proliferation and differentiation. Ras is activated by guanine nucleotide exchange factors (GEFs) that release GDP and allow GTP binding. Many RasGEFs have been identified. These are sequestered in the cytosol until activation by growth factors triggers recruitment to the plasma membrane or Golgi, where the GEF colocalizes with Ras. Active GTP-bound Ras interacts with several effector proteins: among the best characterized are the Raf kinases, phosphatidylinositol 3-kinase (PI3K), RalGEFs and NORE/MST1. Most Ras proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of m
Probab=93.46 E-value=0.063 Score=46.62 Aligned_cols=21 Identities=38% Similarity=0.601 Sum_probs=18.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011994 163 ILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~ 183 (473)
|+|+|++|+||||+...|...
T Consensus 2 i~i~G~~~~GKTsli~~l~~~ 22 (160)
T cd00876 2 VVVLGAGGVGKSAITIQFVKG 22 (160)
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999998643
No 467
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=93.45 E-value=0.093 Score=54.84 Aligned_cols=33 Identities=21% Similarity=0.360 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|..++|.|+||.|||.+|+.++..+|+.++.
T Consensus 164 k~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~ 196 (388)
T KOG0651|consen 164 KPPKGLLLYGPPGTGKTLLARAVAATMGVNFLK 196 (388)
T ss_pred CCCceeEEeCCCCCchhHHHHHHHHhcCCceEE
Confidence 468899999999999999999999999987664
No 468
>cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo
Probab=93.44 E-value=0.073 Score=51.98 Aligned_cols=27 Identities=26% Similarity=0.343 Sum_probs=24.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
|-+..|.|++||||||+...|+--|+.
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~ 51 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGI 51 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcc
Confidence 568899999999999999999887764
No 469
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.44 E-value=0.082 Score=50.42 Aligned_cols=25 Identities=28% Similarity=0.353 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-.+++|.|+||+|||+++..++...
T Consensus 23 g~i~~i~G~~GsGKT~l~~~la~~~ 47 (225)
T PRK09361 23 GTITQIYGPPGSGKTNICLQLAVEA 47 (225)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998744
No 470
>cd00154 Rab Rab family. Rab GTPases form the largest family within the Ras superfamily. There are at least 60 Rab genes in the human genome, and a number of Rab GTPases are conserved from yeast to humans. Rab GTPases are small, monomeric proteins that function as molecular switches to regulate vesicle trafficking pathways. The different Rab GTPases are localized to the cytosolic face of specific intracellular membranes, where they regulate distinct steps in membrane traffic pathways. In the GTP-bound form, Rab GTPases recruit specific sets of effector proteins onto membranes. Through their effectors, Rab GTPases regulate vesicle formation, actin- and tubulin-dependent vesicle movement, and membrane fusion. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide di
Probab=93.44 E-value=0.068 Score=45.68 Aligned_cols=21 Identities=24% Similarity=0.501 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.|+++|.+|+||||+...|..
T Consensus 2 ~i~~~G~~~~GKStl~~~l~~ 22 (159)
T cd00154 2 KIVLIGDSGVGKTSLLLRFVD 22 (159)
T ss_pred eEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999864
No 471
>PRK14247 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.40 E-value=0.066 Score=51.89 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|||||||.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~i~G~~ 53 (250)
T PRK14247 29 NTITALMGPSGSGKSTLLRVFNRLI 53 (250)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3489999999999999999998754
No 472
>cd04160 Arfrp1 Arfrp1 subfamily. Arfrp1 (Arf-related protein 1), formerly known as ARP, is a membrane-associated Arf family member that lacks the N-terminal myristoylation motif. Arfrp1 is mainly associated with the trans-Golgi compartment and the trans-Golgi network, where it regulates the targeting of Arl1 and the GRIP domain-containing proteins, golgin-97 and golgin-245, onto Golgi membranes. It is also involved in the anterograde transport of the vesicular stomatitis virus G protein from the Golgi to the plasma membrane, and in the retrograde transport of TGN38 and Shiga toxin from endosomes to the trans-Golgi network. Arfrp1 also inhibits Arf/Sec7-dependent activation of phospholipase D. Deletion of Arfrp1 in mice causes embryonic lethality at the gastrulation stage and apoptosis of mesodermal cells, indicating its importance in development.
Probab=93.40 E-value=0.07 Score=47.28 Aligned_cols=22 Identities=32% Similarity=0.480 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc
Q 011994 163 ILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~L 184 (473)
|+|+|.+|+|||||...|....
T Consensus 2 i~~vG~~~~GKstLi~~l~~~~ 23 (167)
T cd04160 2 VLILGLDNAGKTTFLEQLKTLF 23 (167)
T ss_pred EEEEecCCCCHHHHHHHHhhhc
Confidence 7899999999999999997654
No 473
>PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional
Probab=93.40 E-value=0.068 Score=51.26 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 33 Ge~~~i~G~nGsGKSTLl~~l~G~~ 57 (225)
T PRK10247 33 GEFKLITGPSGCGKSTLLKIVASLI 57 (225)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3489999999999999999998643
No 474
>CHL00206 ycf2 Ycf2; Provisional
Probab=93.39 E-value=0.074 Score=65.83 Aligned_cols=33 Identities=27% Similarity=0.312 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|.=||+.||||||||.+|+.||...+++++-
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIs 1660 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFIT 1660 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEE
Confidence 346789999999999999999999999998763
No 475
>COG4185 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.39 E-value=0.15 Score=48.86 Aligned_cols=142 Identities=17% Similarity=0.184 Sum_probs=90.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|...++.|++|+||||+-..+-..+ +.-.++.+|.+-..+-. |+.. ...+ +|-.+
T Consensus 1 m~~l~IvaG~NGsGKstv~~~~~~~~~~~~~~VN~D~iA~~i~p-----------~~p~-------~~~i--~A~r~--- 57 (187)
T COG4185 1 MKRLDIVAGPNGSGKSTVYASTLAPLLPGIVFVNADEIAAQISP-----------DNPT-------SAAI--QAARV--- 57 (187)
T ss_pred CceEEEEecCCCCCceeeeeccchhhcCCeEEECHHHHhhhcCC-----------CCch-------HHHH--HHHHH---
Confidence 46788999999999999976554444 33344578877664211 1110 0011 11111
Q ss_pred HHHHHHHHHhCCCcEEEEcccCCcccccccccCCCCCccccccCCCCCCCCCCCccccccCcccccccccCCCCCCCCCC
Q 011994 238 LAGDLKKAMKDGKPIIIEGIHLDPSIYLMDDDSKAPATTTEKTNSESVPSDDNPVTQVESNSASVCVSDWENGNNSPEQP 317 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvhL~Pel~l~~~~~r~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+.+...++.|.+++.|.+.--|.+... + ++.
T Consensus 58 ai~~i~~~I~~~~~F~~ETtLS~~s~~~~--i---------k~A------------------------------------ 90 (187)
T COG4185 58 AIDRIARLIDLGRPFIAETTLSGPSILEL--I---------KTA------------------------------------ 90 (187)
T ss_pred HHHHHHHHHHcCCCcceEEeeccchHHHH--H---------HHH------------------------------------
Confidence 23455667899999999998887777522 0 011
Q ss_pred CCCCcccccccccccchhhHHhhhCCCCCCCCCCCCCCCCCCccccccccCCCCcEEEEEEEEecchhhHHHHHHhhhhh
Q 011994 318 STGGKISSEQVNKIADSLESIVLAGTSSENKGETPKDPGVDRNTSVKKEKSGPDPIIIPIVLKMADFDHKALLEEWILTH 397 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~iivp~vl~~~~~dh~~lle~~~~~r 397 (473)
.+.+=+|+=+.+.+...+-. +|+ +..|
T Consensus 91 --------------------------------------------------k~~Gf~I~L~y~~i~~~ela--vER-Vk~R 117 (187)
T COG4185 91 --------------------------------------------------KAAGFYIVLNYIVIDSVELA--VER-VKLR 117 (187)
T ss_pred --------------------------------------------------HhCCeEEEEEEEEeCcHHHH--HHH-HHHH
Confidence 12456899999999998766 655 6777
Q ss_pred -cccccccccch--HHHHhhHHHHHHHHh
Q 011994 398 -TFGDKCLVQNK--DELVSKLKTIQNYLC 423 (473)
Q Consensus 398 -a~~~~~~~~~~--~~~i~nl~~IQ~yLc 423 (473)
+.|.-..|.|+ +.|-+.|-.+--||-
T Consensus 118 Va~GGH~IpED~Ir~RY~rsle~l~~~l~ 146 (187)
T COG4185 118 VAKGGHDIPEDKIRRRYRRSLELLAQALT 146 (187)
T ss_pred HhcCCCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 56777788887 467777777777653
No 476
>PRK14242 phosphate transporter ATP-binding protein; Provisional
Probab=93.39 E-value=0.068 Score=51.90 Aligned_cols=25 Identities=28% Similarity=0.239 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 32 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 56 (253)
T PRK14242 32 NQVTALIGPSGCGKSTFLRCLNRMN 56 (253)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3489999999999999999998643
No 477
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=93.39 E-value=0.07 Score=55.11 Aligned_cols=25 Identities=36% Similarity=0.452 Sum_probs=22.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
-+|+|+|++||||||+...|...+.
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4899999999999999999987664
No 478
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.39 E-value=0.069 Score=50.09 Aligned_cols=23 Identities=30% Similarity=0.426 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|.|++|+||||+.+.|+..
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G~ 56 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAGR 56 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999853
No 479
>PRK13531 regulatory ATPase RavA; Provisional
Probab=93.38 E-value=0.18 Score=55.28 Aligned_cols=24 Identities=25% Similarity=0.389 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.|+|.|+||+|||++|+.|+...+
T Consensus 41 hVLL~GpPGTGKT~LAraLa~~~~ 64 (498)
T PRK13531 41 SVFLLGPPGIAKSLIARRLKFAFQ 64 (498)
T ss_pred CEEEECCCChhHHHHHHHHHHHhc
Confidence 589999999999999999998764
No 480
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=93.37 E-value=0.068 Score=55.98 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-+|+|+|++||||||+...|...+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998876
No 481
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=93.34 E-value=0.068 Score=52.57 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl~ 51 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGFV 51 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 482
>PRK10646 ADP-binding protein; Provisional
Probab=93.33 E-value=0.093 Score=49.11 Aligned_cols=28 Identities=29% Similarity=0.372 Sum_probs=25.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+|++.|.=|+||||+++.|++.||+.
T Consensus 28 g~vi~L~GdLGaGKTtf~rgl~~~Lg~~ 55 (153)
T PRK10646 28 ATVIYLYGDLGAGKTTFSRGFLQALGHQ 55 (153)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 3589999999999999999999999975
No 483
>cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.33 E-value=0.07 Score=51.01 Aligned_cols=25 Identities=20% Similarity=0.292 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (234)
T cd03251 28 GETVALVGPSGSGKSTLVNLIPRFY 52 (234)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccc
Confidence 3489999999999999999998665
No 484
>smart00175 RAB Rab subfamily of small GTPases. Rab GTPases are implicated in vesicle trafficking.
Probab=93.32 E-value=0.071 Score=46.71 Aligned_cols=22 Identities=27% Similarity=0.539 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|+++|.+|+||||+...|...
T Consensus 2 kv~v~G~~~~GKTtli~~l~~~ 23 (164)
T smart00175 2 KIILIGDSGVGKSSLLSRFTDG 23 (164)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4899999999999999998643
No 485
>PRK10908 cell division protein FtsE; Provisional
Probab=93.31 E-value=0.072 Score=50.73 Aligned_cols=25 Identities=20% Similarity=0.227 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (222)
T PRK10908 28 GEMAFLTGHSGAGKSTLLKLICGIE 52 (222)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 486
>PRK14250 phosphate ABC transporter ATP-binding protein; Provisional
Probab=93.30 E-value=0.071 Score=51.68 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 29 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (241)
T PRK14250 29 GAIYTIVGPSGAGKSTLIKLINRLI 53 (241)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3489999999999999999998654
No 487
>KOG3877 consensus NADH:ubiquinone oxidoreductase, NDUFA10/42kDa subunit [Energy production and conversion]
Probab=93.30 E-value=0.17 Score=52.30 Aligned_cols=30 Identities=33% Similarity=0.502 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+|.+-|+-|+|||++|..||++||+.++
T Consensus 71 SkvI~VeGnI~sGK~klAKelAe~Lgf~hf 100 (393)
T KOG3877|consen 71 SKVIVVEGNIGSGKTKLAKELAEQLGFVHF 100 (393)
T ss_pred ceEEEEeCCcccCchhHHHHHHHHhCCccc
Confidence 469999999999999999999999997654
No 488
>smart00173 RAS Ras subfamily of RAS small GTPases. Similar in fold and function to the bacterial EF-Tu GTPase. p21Ras couples receptor Tyr kinases and G protein receptors to protein kinase cascades
Probab=93.29 E-value=0.075 Score=46.93 Aligned_cols=21 Identities=38% Similarity=0.599 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.|+|.|.+|+||||+..+|..
T Consensus 2 ki~v~G~~~~GKTsli~~~~~ 22 (164)
T smart00173 2 KLVVLGSGGVGKSALTIQFVQ 22 (164)
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 478999999999999999975
No 489
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=93.27 E-value=0.073 Score=51.33 Aligned_cols=24 Identities=25% Similarity=0.277 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+||||+.+.|+..+
T Consensus 12 e~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 12 EFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 490
>PRK13974 thymidylate kinase; Provisional
Probab=93.27 E-value=0.083 Score=50.64 Aligned_cols=25 Identities=28% Similarity=0.357 Sum_probs=23.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+|.|.|++||||||++..|+..|.
T Consensus 4 ~~i~~eG~dGsGKsT~~~~l~~~l~ 28 (212)
T PRK13974 4 KFIVLEGIDGCGKTTQIDHLSKWLP 28 (212)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5899999999999999999999884
No 491
>PF00025 Arf: ADP-ribosylation factor family The prints entry specific to Sar1 proteins The Prosite entry specific to Sar1 proteins; InterPro: IPR006689 Small GTPases form an independent superfamily within the larger class of regulatory GTP hydrolases. This superfamily contains proteins that control a vast number of important processes and possess a common, structurally preserved GTP-binding domain [, ]. Sequence comparisons of small G proteins from various species have revealed that they are conserved in primary structures at the level of 30-55% similarity []. Crystallographic analysis of various small G proteins revealed the presence of a 20 kDa catalytic domain that is unique for the whole superfamily [, ]. The domain is built of five alpha helices (A1-A5), six beta-strands (B1-B6) and five polypeptide loops (G1-G5). A structural comparison of the GTP- and GDP-bound form, allows one to distinguish two functional loop regions: switch I and switch II that surround the gamma-phosphate group of the nucleotide. The G1 loop (also called the P-loop) that connects the B1 strand and the A1 helix is responsible for the binding of the phosphate groups. The G3 loop provides residues for Mg(2+) and phosphate binding and is located at the N terminus of the A2 helix. The G1 and G3 loops are sequentially similar to Walker A and Walker B boxes that are found in other nucleotide binding motifs. The G2 loop connects the A1 helix and the B2 strand and contains a conserved Thr residue responsible for Mg(2+) binding. The guanine base is recognised by the G4 and G5 loops. The consensus sequence NKXD of the G4 loop contains Lys and Asp residues directly interacting with the nucleotide. Part of the G5 loop located between B6 and A5 acts as a recognition site for the guanine base []. The small GTPase superfamily can be divided into at least 8 different families, including: Arf small GTPases. GTP-binding proteins involved in protein trafficking by modulating vesicle budding and uncoating within the Golgi apparatus. Ran small GTPases. GTP-binding proteins involved in nucleocytoplasmic transport. Required for the import of proteins into the nucleus and also for RNA export. Rab small GTPases. GTP-binding proteins involved in vesicular traffic. Rho small GTPases. GTP-binding proteins that control cytoskeleton reorganisation. Ras small GTPases. GTP-binding proteins involved in signalling pathways. Sar1 small GTPases. Small GTPase component of the coat protein complex II (COPII) which promotes the formation of transport vesicles from the endoplasmic reticulum (ER). Mitochondrial Rho (Miro). Small GTPase domain found in mitochondrial proteins involved in mitochondrial trafficking. Roc small GTPases domain. Small GTPase domain always found associated with the COR domain. This entry represents a branch of the small GTPase superfamily that includes the ADP ribosylation factor Arf, Arl (Arf-like), Arp (Arf-related proteins) and the remotely related Sar (Secretion-associated and Ras-related) proteins. Arf proteins are major regulators of vesicle biogenesis in intracellular traffic []. They cycle between inactive GDP-bound and active GTP-bound forms that bind selectively to effectors. The classical structural GDP/GTP switch is characterised by conformational changes at the so-called switch 1 and switch 2 regions, which bind tightly to the gamma-phosphate of GTP but poorly or not at all to the GDP nucleotide. Structural studies of Arf1 and Arf6 have revealed that although these proteins feature the switch 1 and 2 conformational changes, they depart from other small GTP-binding proteins in that they use an additional, unique switch to propagate structural information from one side of the protein to the other. The GDP/GTP structural cycles of human Arf1 and Arf6 feature a unique conformational change that affects the beta2-beta3 strands connecting switch 1 and switch 2 (interswitch) and also the amphipathic helical N terminus. In GDP-bound Arf1 and Arf6, the interswitch is retracted and forms a pocket to which the N-terminal helix binds, the latter serving as a molecular hasp to maintain the inactive conformation. In the GTP-bound form of these proteins, the interswitch undergoes a two-residue register shift that pulls switch 1 and switch 2 up, restoring an active conformation that can bind GTP. In this conformation, the interswitch projects out of the protein and extrudes the N-terminal hasp by occluding its binding pocket.; GO: 0005525 GTP binding; PDB: 2H57_B 2W83_B 3N5C_B 2J5X_A 3LVR_E 2BAO_A 3LVQ_E 2A5F_A 3PCR_B 1E0S_A ....
Probab=93.26 E-value=0.095 Score=48.42 Aligned_cols=32 Identities=22% Similarity=0.478 Sum_probs=25.2
Q ss_pred HHHhhccCCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 151 MTRFHHQRVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 151 ~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+..+...++...|+|.|++||||||+...|..
T Consensus 5 ~~~~~~~~~~~~ililGl~~sGKTtll~~l~~ 36 (175)
T PF00025_consen 5 LSKLKSKKKEIKILILGLDGSGKTTLLNRLKN 36 (175)
T ss_dssp HHHCTTTTSEEEEEEEESTTSSHHHHHHHHHS
T ss_pred HHHhcccCcEEEEEEECCCccchHHHHHHhhh
Confidence 33444445667899999999999999999964
No 492
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=93.23 E-value=0.077 Score=48.99 Aligned_cols=25 Identities=32% Similarity=0.312 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+||||+.+.|+..+
T Consensus 28 Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 28 GEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCEEEEECCCCCCHHHHHHHHhccC
Confidence 3489999999999999999998754
No 493
>COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism]
Probab=93.23 E-value=0.069 Score=55.84 Aligned_cols=23 Identities=26% Similarity=0.366 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.|.||+||||||+-+.+|--.
T Consensus 31 f~vllGPSGcGKSTlLr~IAGLe 53 (338)
T COG3839 31 FVVLLGPSGCGKSTLLRMIAGLE 53 (338)
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 78999999999999999998543
No 494
>PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed
Probab=93.23 E-value=0.074 Score=51.24 Aligned_cols=25 Identities=24% Similarity=0.311 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 27 Ge~~~l~G~nGsGKSTLl~~l~G~~ 51 (240)
T PRK09493 27 GEVVVIIGPSGSGKSTLLRCINKLE 51 (240)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998654
No 495
>cd01862 Rab7 Rab7 subfamily. Rab7 is a small Rab GTPase that regulates vesicular traffic from early to late endosomal stages of the endocytic pathway. The yeast Ypt7 and mammalian Rab7 are both involved in transport to the vacuole/lysosome, whereas Ypt7 is also required for homotypic vacuole fusion. Mammalian Rab7 is an essential participant in the autophagic pathway for sequestration and targeting of cytoplasmic components to the lytic compartment. Mammalian Rab7 is also proposed to function as a tumor suppressor. GTPase activating proteins (GAPs) interact with GTP-bound Rab and accelerate the hydrolysis of GTP to GDP. Guanine nucleotide exchange factors (GEFs) interact with GDP-bound Rabs to promote the formation of the GTP-bound state. Rabs are further regulated by guanine nucleotide dissociation inhibitors (GDIs), which facilitate Rab recycling by masking C-terminal lipid binding and promoting cytosolic localization. Most Rab GTPases contain a lipid modification site at the C-
Probab=93.21 E-value=0.074 Score=47.11 Aligned_cols=22 Identities=23% Similarity=0.554 Sum_probs=19.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|++.|.+|+||||++..|...
T Consensus 2 ki~viG~~~~GKSsl~~~l~~~ 23 (172)
T cd01862 2 KVIILGDSGVGKTSLMNQYVNK 23 (172)
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5899999999999999988653
No 496
>cd04137 RheB Rheb (Ras Homolog Enriched in Brain) subfamily. Rheb was initially identified in rat brain, where its expression is elevated by seizures or by long-term potentiation. It is expressed ubiquitously, with elevated levels in muscle and brain. Rheb functions as an important mediator between the tuberous sclerosis complex proteins, TSC1 and TSC2, and the mammalian target of rapamycin (TOR) kinase to stimulate cell growth. TOR kinase regulates cell growth by controlling nutrient availability, growth factors, and the energy status of the cell. TSC1 and TSC2 form a dimeric complex that has tumor suppressor activity, and TSC2 is a GTPase activating protein (GAP) for Rheb. The TSC1/TSC2 complex inhibits the activation of TOR kinase through Rheb. Rheb has also been shown to induce the formation of large cytoplasmic vacuoles in a process that is dependent on the GTPase cycle of Rheb, but independent of the TOR kinase, suggesting Rheb plays a role in endocytic trafficking that le
Probab=93.21 E-value=0.083 Score=47.73 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=19.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|+|+|.+|+||||+...|...
T Consensus 2 ~kv~l~G~~g~GKTtl~~~~~~~ 24 (180)
T cd04137 2 RKIAVLGSRSVGKSSLTVQFVEG 24 (180)
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999988743
No 497
>cd00157 Rho Rho (Ras homology) family. Members of the Rho family include RhoA, Cdc42, Rac, Rnd, Wrch1, RhoBTB, and Rop. There are 22 human Rho family members identified currently. These proteins are all involved in the reorganization of the actin cytoskeleton in response to external stimuli. They also have roles in cell transformation by Ras in cytokinesis, in focal adhesion formation and in the stimulation of stress-activated kinase. These various functions are controlled through distinct effector proteins and mediated through a GTP-binding/GTPase cycle involving three classes of regulating proteins: GAPs (GTPase-activating proteins), GEFs (guanine nucleotide exchange factors), and GDIs (guanine nucleotide dissociation inhibitors). Most Rho proteins contain a lipid modification site at the C-terminus, with a typical sequence motif CaaX, where a = an aliphatic amino acid and X = any amino acid. Lipid binding is essential for membrane attachment, a key feature of most Rho protein
Probab=93.20 E-value=0.081 Score=46.83 Aligned_cols=22 Identities=27% Similarity=0.457 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|+|.|.+|+||||+..+|...
T Consensus 2 ki~i~G~~~~GKSsli~~l~~~ 23 (171)
T cd00157 2 KIVVVGDGAVGKTCLLISYTTG 23 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999998653
No 498
>PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.076 Score=51.19 Aligned_cols=25 Identities=16% Similarity=0.142 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-++.|.|++|+|||||.+.|+..+
T Consensus 29 Ge~~~l~G~nGsGKSTLl~~l~G~~ 53 (241)
T PRK10895 29 GEIVGLLGPNGAGKTTTFYMVVGIV 53 (241)
T ss_pred CcEEEEECCCCCCHHHHHHHHhCCC
Confidence 3589999999999999999998755
No 499
>PRK10744 pstB phosphate transporter ATP-binding protein; Provisional
Probab=93.18 E-value=0.075 Score=52.09 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|+|||||.+.|+..+
T Consensus 40 e~~~i~G~nGsGKSTLl~~l~Gl~ 63 (260)
T PRK10744 40 QVTAFIGPSGCGKSTLLRTFNRMY 63 (260)
T ss_pred CEEEEECCCCCCHHHHHHHHhccc
Confidence 489999999999999999998654
No 500
>cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in
Probab=93.17 E-value=0.076 Score=50.78 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.-++.|+|++|+|||||.+.|+..+.
T Consensus 33 Ge~~~l~G~nGsGKSTLlk~l~G~~~ 58 (226)
T cd03234 33 GQVMAILGSSGSGKTTLLDAISGRVE 58 (226)
T ss_pred CeEEEEECCCCCCHHHHHHHHhCccC
Confidence 35899999999999999999986553
Done!