Query 011994
Match_columns 473
No_of_seqs 274 out of 1855
Neff 4.6
Searched_HMMs 29240
Date Mon Mar 25 19:30:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011994.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011994hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sr0_A Adenylate kinase; phosp 98.8 8.6E-09 2.9E-13 97.0 8.0 82 161-257 1-83 (206)
2 1ly1_A Polynucleotide kinase; 98.8 1.6E-08 5.6E-13 88.7 8.8 88 159-263 1-92 (181)
3 2rhm_A Putative kinase; P-loop 98.8 3.9E-08 1.4E-12 87.6 10.8 84 158-258 3-86 (193)
4 1gvn_B Zeta; postsegregational 98.7 3.7E-08 1.3E-12 96.4 11.1 113 120-262 5-123 (287)
5 3umf_A Adenylate kinase; rossm 98.7 2.2E-08 7.5E-13 95.4 8.5 86 157-257 26-116 (217)
6 1qhx_A CPT, protein (chloramph 98.6 1.2E-07 4E-12 83.8 9.2 41 159-199 2-43 (178)
7 1tev_A UMP-CMP kinase; ploop, 98.6 1.1E-07 3.8E-12 84.2 8.8 41 159-199 2-42 (196)
8 2c95_A Adenylate kinase 1; tra 98.6 1.6E-07 5.6E-12 83.7 9.6 85 158-257 7-96 (196)
9 3tlx_A Adenylate kinase 2; str 98.6 1.1E-07 3.9E-12 90.2 9.0 85 157-256 26-114 (243)
10 2bwj_A Adenylate kinase 5; pho 98.6 1.8E-07 6.1E-12 83.7 9.6 42 159-200 11-52 (199)
11 1qf9_A UMP/CMP kinase, protein 98.6 2.7E-07 9.3E-12 81.5 9.9 43 158-200 4-46 (194)
12 1aky_A Adenylate kinase; ATP:A 98.6 1.5E-07 5E-12 86.8 8.5 43 158-200 2-44 (220)
13 3fb4_A Adenylate kinase; psych 98.6 2.1E-07 7.2E-12 85.1 9.4 41 161-201 1-41 (216)
14 3lw7_A Adenylate kinase relate 98.6 1.3E-07 4.5E-12 81.4 7.6 87 161-263 2-91 (179)
15 3dl0_A Adenylate kinase; phosp 98.5 2.6E-07 8.8E-12 84.6 9.7 41 161-201 1-41 (216)
16 2cdn_A Adenylate kinase; phosp 98.5 2.9E-07 9.8E-12 83.6 9.6 44 157-200 17-60 (201)
17 1ukz_A Uridylate kinase; trans 98.5 4.8E-07 1.6E-11 81.9 11.0 43 157-199 12-54 (203)
18 2p5t_B PEZT; postsegregational 98.5 6.6E-07 2.3E-11 85.1 11.9 116 121-262 5-122 (253)
19 1ltq_A Polynucleotide kinase; 98.5 2.3E-07 7.9E-12 89.1 8.5 88 159-263 1-92 (301)
20 2xb4_A Adenylate kinase; ATP-b 98.5 2E-07 6.7E-12 87.0 7.7 82 161-257 1-85 (223)
21 3cm0_A Adenylate kinase; ATP-b 98.5 1.9E-07 6.4E-12 83.1 7.1 42 159-200 3-44 (186)
22 3be4_A Adenylate kinase; malar 98.5 2.7E-07 9.2E-12 85.4 8.1 43 159-201 4-46 (217)
23 1zd8_A GTP:AMP phosphotransfer 98.5 3.3E-07 1.1E-11 85.1 8.7 42 158-199 5-46 (227)
24 3t61_A Gluconokinase; PSI-biol 98.4 3.9E-07 1.3E-11 82.8 7.6 37 158-195 16-52 (202)
25 2vli_A Antibiotic resistance p 98.4 2E-07 6.7E-12 82.5 5.5 33 159-191 4-36 (183)
26 1ak2_A Adenylate kinase isoenz 98.4 8.5E-07 2.9E-11 82.9 8.7 44 158-201 14-57 (233)
27 1e4v_A Adenylate kinase; trans 98.4 5.6E-07 1.9E-11 82.8 7.3 41 161-201 1-41 (214)
28 1kht_A Adenylate kinase; phosp 98.3 1.9E-06 6.4E-11 76.2 10.0 41 160-200 3-48 (192)
29 3trf_A Shikimate kinase, SK; a 98.3 1.9E-06 6.6E-11 76.6 9.2 40 160-200 5-44 (185)
30 3a4m_A L-seryl-tRNA(SEC) kinas 98.3 1E-06 3.5E-11 84.3 7.7 40 159-198 3-46 (260)
31 1zak_A Adenylate kinase; ATP:A 98.3 7.6E-07 2.6E-11 82.2 6.5 43 159-201 4-46 (222)
32 3vaa_A Shikimate kinase, SK; s 98.3 3.2E-06 1.1E-10 77.0 10.6 39 159-197 24-62 (199)
33 2pt5_A Shikimate kinase, SK; a 98.3 3.7E-06 1.3E-10 73.4 10.0 37 161-198 1-37 (168)
34 2iyv_A Shikimate kinase, SK; t 98.2 1.1E-06 3.7E-11 78.3 4.6 39 160-199 2-40 (184)
35 1via_A Shikimate kinase; struc 98.2 5.8E-06 2E-10 73.3 9.3 36 162-198 6-41 (175)
36 3zvl_A Bifunctional polynucleo 98.2 1.4E-06 5E-11 89.4 6.0 67 159-263 257-323 (416)
37 3gmt_A Adenylate kinase; ssgci 98.2 4.4E-06 1.5E-10 80.7 8.9 83 160-257 8-94 (230)
38 1nks_A Adenylate kinase; therm 98.2 2.5E-06 8.7E-11 75.3 6.6 39 161-199 2-45 (194)
39 1e6c_A Shikimate kinase; phosp 98.1 7.5E-06 2.6E-10 71.6 9.0 37 161-198 3-39 (173)
40 3e70_C DPA, signal recognition 98.1 5.2E-06 1.8E-10 83.4 8.5 93 89-184 59-153 (328)
41 4eun_A Thermoresistant glucoki 98.1 1.6E-05 5.4E-10 72.4 10.8 37 158-195 27-63 (200)
42 1knq_A Gluconate kinase; ALFA/ 98.1 2.1E-05 7E-10 69.5 10.4 36 159-195 7-42 (175)
43 2axn_A 6-phosphofructo-2-kinas 98.1 5.1E-06 1.7E-10 88.2 7.7 95 158-263 33-133 (520)
44 2plr_A DTMP kinase, probable t 98.1 1.9E-05 6.4E-10 70.9 10.3 42 159-200 3-50 (213)
45 1zuh_A Shikimate kinase; alpha 98.0 4.5E-06 1.5E-10 73.4 5.3 35 162-197 9-43 (168)
46 3b9q_A Chloroplast SRP recepto 98.0 1.9E-05 6.5E-10 78.2 10.1 101 88-196 35-140 (302)
47 2og2_A Putative signal recogni 98.0 2.1E-05 7E-10 80.3 10.0 100 89-196 93-197 (359)
48 2f6r_A COA synthase, bifunctio 98.0 2.4E-05 8.2E-10 76.0 9.9 37 158-196 73-109 (281)
49 3kb2_A SPBC2 prophage-derived 98.0 6.4E-06 2.2E-10 71.6 5.3 36 161-197 2-37 (173)
50 1kag_A SKI, shikimate kinase I 97.9 6E-06 2E-10 72.5 4.7 38 159-197 3-40 (173)
51 3iij_A Coilin-interacting nucl 97.9 5.9E-06 2E-10 73.5 4.5 40 159-198 10-49 (180)
52 1zu4_A FTSY; GTPase, signal re 97.9 1.8E-05 6.1E-10 79.1 8.1 102 88-196 39-145 (320)
53 1y63_A LMAJ004144AAA protein; 97.9 6.6E-06 2.3E-10 74.2 4.5 39 159-197 9-48 (184)
54 2yhs_A FTSY, cell division pro 97.9 2.5E-05 8.6E-10 83.2 9.3 98 88-196 230-333 (503)
55 1uf9_A TT1252 protein; P-loop, 97.9 1.2E-05 4E-10 72.0 5.7 40 158-198 6-45 (203)
56 1cke_A CK, MSSA, protein (cyti 97.9 9.6E-06 3.3E-10 74.2 5.1 39 160-198 5-43 (227)
57 3dm5_A SRP54, signal recogniti 97.9 3.4E-05 1.2E-09 81.0 9.4 100 89-196 35-140 (443)
58 2yvu_A Probable adenylyl-sulfa 97.8 4.2E-05 1.4E-09 68.4 8.4 43 157-199 10-56 (186)
59 1vma_A Cell division protein F 97.8 2.7E-05 9.4E-10 77.5 7.8 91 88-196 50-144 (306)
60 3foz_A TRNA delta(2)-isopenten 97.8 1.7E-05 5.9E-10 80.0 6.4 39 156-195 6-44 (316)
61 3ake_A Cytidylate kinase; CMP 97.8 1.7E-05 5.7E-10 71.3 5.5 36 162-197 4-39 (208)
62 3uie_A Adenylyl-sulfate kinase 97.8 5.9E-05 2E-09 68.6 9.0 41 158-198 23-67 (200)
63 2grj_A Dephospho-COA kinase; T 97.8 1.5E-05 5E-10 74.1 5.0 45 155-199 7-51 (192)
64 2px0_A Flagellar biosynthesis 97.8 2.5E-05 8.6E-10 77.0 6.8 94 89-194 45-144 (296)
65 1m7g_A Adenylylsulfate kinase; 97.8 2.9E-05 9.8E-10 71.3 6.4 42 157-198 22-68 (211)
66 1jjv_A Dephospho-COA kinase; P 97.8 2E-05 6.7E-10 71.5 5.2 35 160-196 2-36 (206)
67 1uj2_A Uridine-cytidine kinase 97.8 1.6E-05 5.3E-10 75.3 4.6 32 157-188 19-50 (252)
68 3fdi_A Uncharacterized protein 97.8 5.4E-05 1.9E-09 70.3 7.9 37 160-197 6-42 (201)
69 3kl4_A SRP54, signal recogniti 97.8 3.6E-05 1.2E-09 80.4 7.4 101 89-196 31-137 (433)
70 1vht_A Dephospho-COA kinase; s 97.8 2.2E-05 7.6E-10 72.0 5.1 37 159-197 3-39 (218)
71 4eaq_A DTMP kinase, thymidylat 97.7 0.00037 1.3E-08 65.8 13.6 33 157-189 23-57 (229)
72 2xxa_A Signal recognition part 97.7 6.5E-05 2.2E-09 78.2 8.9 95 89-194 34-139 (433)
73 2bbw_A Adenylate kinase 4, AK4 97.7 2.4E-05 8.3E-10 73.4 5.0 40 159-198 26-65 (246)
74 3exa_A TRNA delta(2)-isopenten 97.7 3.7E-05 1.3E-09 77.8 6.4 40 159-199 2-43 (322)
75 2h92_A Cytidylate kinase; ross 97.7 2.3E-05 7.9E-10 71.6 4.2 38 160-197 3-40 (219)
76 3r20_A Cytidylate kinase; stru 97.7 2.9E-05 9.8E-10 74.8 4.7 39 159-197 8-46 (233)
77 2bdt_A BH3686; alpha-beta prot 97.7 8.7E-05 3E-09 66.4 7.6 37 161-197 3-39 (189)
78 3d3q_A TRNA delta(2)-isopenten 97.7 2.6E-05 8.9E-10 79.3 4.7 36 159-195 6-41 (340)
79 3a8t_A Adenylate isopentenyltr 97.7 3E-05 1E-09 78.9 5.1 37 158-195 38-74 (339)
80 1rj9_A FTSY, signal recognitio 97.6 5.5E-05 1.9E-09 75.0 6.4 87 88-184 34-126 (304)
81 1j8m_F SRP54, signal recogniti 97.6 0.00011 3.7E-09 72.6 8.5 98 89-194 32-136 (297)
82 3crm_A TRNA delta(2)-isopenten 97.6 8.6E-05 2.9E-09 74.9 7.8 36 159-195 4-39 (323)
83 2if2_A Dephospho-COA kinase; a 97.6 2.9E-05 1E-09 70.1 3.7 36 161-197 2-37 (204)
84 2ffh_A Protein (FFH); SRP54, s 97.6 0.00012 4.3E-09 76.2 8.8 99 89-196 34-138 (425)
85 3eph_A TRNA isopentenyltransfe 97.6 3.5E-05 1.2E-09 80.3 4.6 39 160-199 2-42 (409)
86 2ze6_A Isopentenyl transferase 97.6 4.4E-05 1.5E-09 73.0 5.0 34 161-195 2-35 (253)
87 3nwj_A ATSK2; P loop, shikimat 97.6 0.0001 3.6E-09 71.2 7.2 38 161-198 49-86 (250)
88 2v54_A DTMP kinase, thymidylat 97.6 4.5E-05 1.5E-09 68.4 4.3 32 159-190 3-35 (204)
89 1q3t_A Cytidylate kinase; nucl 97.5 5.8E-05 2E-09 70.5 4.9 41 157-197 13-53 (236)
90 1bif_A 6-phosphofructo-2-kinas 97.5 0.00012 4E-09 76.0 7.3 93 158-261 37-135 (469)
91 2pbr_A DTMP kinase, thymidylat 97.5 5.9E-05 2E-09 66.7 4.4 30 161-190 1-33 (195)
92 2gks_A Bifunctional SAT/APS ki 97.5 0.00015 5E-09 77.6 8.1 83 158-261 370-456 (546)
93 4e22_A Cytidylate kinase; P-lo 97.5 7.3E-05 2.5E-09 71.2 5.1 38 160-197 27-64 (252)
94 2qt1_A Nicotinamide riboside k 97.5 4.9E-05 1.7E-09 69.1 3.2 39 158-196 19-58 (207)
95 2wwf_A Thymidilate kinase, put 97.5 3.3E-05 1.1E-09 69.7 2.0 31 158-188 8-38 (212)
96 2jaq_A Deoxyguanosine kinase; 97.5 6.8E-05 2.3E-09 66.8 3.9 29 161-189 1-29 (205)
97 1nn5_A Similar to deoxythymidy 97.4 4.2E-05 1.5E-09 69.0 2.1 28 158-185 7-34 (215)
98 2z0h_A DTMP kinase, thymidylat 97.4 9.4E-05 3.2E-09 65.8 4.3 30 161-190 1-33 (197)
99 1zp6_A Hypothetical protein AT 97.4 0.00014 4.6E-09 64.7 5.2 41 158-198 7-48 (191)
100 2v3c_C SRP54, signal recogniti 97.4 0.00028 9.5E-09 73.5 8.0 99 89-195 33-138 (432)
101 1m8p_A Sulfate adenylyltransfe 97.4 0.00057 2E-08 73.5 10.3 42 158-199 394-440 (573)
102 3tau_A Guanylate kinase, GMP k 97.4 0.00032 1.1E-08 64.5 7.2 28 158-185 6-33 (208)
103 1x6v_B Bifunctional 3'-phospho 97.3 0.00028 9.5E-09 77.0 7.7 40 159-198 51-94 (630)
104 2pez_A Bifunctional 3'-phospho 97.3 0.00021 7.1E-09 63.5 5.3 39 159-197 4-46 (179)
105 2j37_W Signal recognition part 97.3 0.00035 1.2E-08 74.3 7.9 98 89-194 35-139 (504)
106 3t15_A Ribulose bisphosphate c 97.3 0.00013 4.3E-09 71.1 4.2 34 157-190 33-66 (293)
107 2qor_A Guanylate kinase; phosp 97.3 0.00014 4.8E-09 66.3 3.8 30 156-185 8-37 (204)
108 4edh_A DTMP kinase, thymidylat 97.3 0.0015 5.1E-08 61.4 10.8 84 159-256 5-99 (213)
109 3hdt_A Putative kinase; struct 97.3 0.00021 7.3E-09 67.9 4.9 41 160-201 14-54 (223)
110 1ls1_A Signal recognition part 97.2 0.001 3.4E-08 65.4 9.3 86 90-184 35-122 (295)
111 3asz_A Uridine kinase; cytidin 97.1 0.00017 5.9E-09 65.4 2.6 35 158-192 4-40 (211)
112 3h4m_A Proteasome-activating n 97.1 0.00046 1.6E-08 65.3 5.6 32 158-189 49-80 (285)
113 4gp7_A Metallophosphoesterase; 97.1 0.0013 4.5E-08 58.7 8.3 77 159-260 8-84 (171)
114 4b4t_K 26S protease regulatory 97.1 0.00052 1.8E-08 71.6 6.1 34 157-190 203-236 (428)
115 1ofh_A ATP-dependent HSL prote 97.1 0.00095 3.2E-08 63.1 7.3 32 158-189 48-79 (310)
116 2qz4_A Paraplegin; AAA+, SPG7, 97.1 0.00045 1.5E-08 64.1 4.8 32 158-189 37-68 (262)
117 3lv8_A DTMP kinase, thymidylat 97.0 0.0027 9.1E-08 61.0 10.2 29 159-187 26-57 (236)
118 4b4t_M 26S protease regulatory 97.0 0.00052 1.8E-08 71.8 5.4 34 157-190 212-245 (434)
119 3v9p_A DTMP kinase, thymidylat 97.0 0.0021 7.3E-08 61.3 9.1 27 158-184 23-49 (227)
120 1a7j_A Phosphoribulokinase; tr 97.0 0.00012 4.2E-09 71.8 0.4 37 159-196 4-45 (290)
121 4b4t_L 26S protease subunit RP 97.0 0.00076 2.6E-08 70.6 6.3 34 157-190 212-245 (437)
122 3cf0_A Transitional endoplasmi 96.9 0.00097 3.3E-08 64.8 6.1 33 158-190 47-79 (301)
123 3ld9_A DTMP kinase, thymidylat 96.9 0.0021 7.3E-08 61.3 8.3 30 157-186 18-47 (223)
124 1d2n_A N-ethylmaleimide-sensit 96.9 0.0012 4E-08 62.6 6.4 33 157-189 61-93 (272)
125 2j41_A Guanylate kinase; GMP, 96.9 0.00055 1.9E-08 61.3 3.9 26 159-184 5-30 (207)
126 4b4t_J 26S protease regulatory 96.9 0.00073 2.5E-08 70.2 5.2 34 157-190 179-212 (405)
127 1g41_A Heat shock protein HSLU 96.9 0.00093 3.2E-08 70.1 6.0 32 159-190 49-80 (444)
128 4tmk_A Protein (thymidylate ki 96.9 0.0046 1.6E-07 58.2 10.2 87 160-257 3-101 (213)
129 1lv7_A FTSH; alpha/beta domain 96.9 0.00075 2.6E-08 63.3 4.8 31 159-189 44-74 (257)
130 4b4t_H 26S protease regulatory 96.9 0.00077 2.6E-08 71.3 5.3 34 157-190 240-273 (467)
131 3hws_A ATP-dependent CLP prote 96.9 0.0019 6.6E-08 64.0 7.8 32 159-190 50-81 (363)
132 4b4t_I 26S protease regulatory 96.8 0.0011 3.9E-08 69.5 6.1 34 157-190 213-246 (437)
133 3b9p_A CG5977-PA, isoform A; A 96.8 0.00078 2.7E-08 64.2 4.4 31 159-189 53-83 (297)
134 1jbk_A CLPB protein; beta barr 96.8 0.0014 4.7E-08 56.3 5.5 27 158-184 41-67 (195)
135 3c8u_A Fructokinase; YP_612366 96.8 0.00091 3.1E-08 61.2 4.3 28 158-185 20-47 (208)
136 3bos_A Putative DNA replicatio 96.8 0.0012 4.1E-08 59.6 5.0 27 159-185 51-77 (242)
137 1njg_A DNA polymerase III subu 96.7 0.0013 4.4E-08 58.3 4.8 30 157-186 42-71 (250)
138 2p65_A Hypothetical protein PF 96.7 0.0014 4.7E-08 56.6 4.9 27 158-184 41-67 (187)
139 3syl_A Protein CBBX; photosynt 96.7 0.0023 7.7E-08 61.1 6.9 29 157-185 64-92 (309)
140 3hjn_A DTMP kinase, thymidylat 96.7 0.0097 3.3E-07 54.9 10.7 81 161-259 1-92 (197)
141 3eie_A Vacuolar protein sortin 96.7 0.0011 3.7E-08 65.0 4.2 32 159-190 50-81 (322)
142 2jeo_A Uridine-cytidine kinase 96.7 0.0013 4.3E-08 61.9 4.4 30 158-187 23-52 (245)
143 2ocp_A DGK, deoxyguanosine kin 96.6 0.0012 4.2E-08 61.5 4.3 27 159-185 1-27 (241)
144 1g8f_A Sulfate adenylyltransfe 96.6 0.0014 4.7E-08 69.9 5.1 29 158-186 393-421 (511)
145 3tqc_A Pantothenate kinase; bi 96.6 0.0015 5.1E-08 65.6 5.1 29 157-185 89-117 (321)
146 1p5z_B DCK, deoxycytidine kina 96.6 0.00062 2.1E-08 64.5 2.0 31 158-188 22-53 (263)
147 2x8a_A Nuclear valosin-contain 96.6 0.0031 1.1E-07 61.0 6.9 30 160-189 44-73 (274)
148 1rz3_A Hypothetical protein rb 96.6 0.0018 6E-08 59.1 4.9 40 157-196 19-62 (201)
149 3tr0_A Guanylate kinase, GMP k 96.6 0.0015 5E-08 58.5 4.1 26 160-185 7-32 (205)
150 1gtv_A TMK, thymidylate kinase 96.6 0.00056 1.9E-08 61.7 1.3 25 161-185 1-25 (214)
151 4hlc_A DTMP kinase, thymidylat 96.6 0.011 3.9E-07 55.0 10.2 82 161-258 3-94 (205)
152 3u61_B DNA polymerase accessor 96.6 0.0016 5.3E-08 63.0 4.4 34 156-189 44-77 (324)
153 1odf_A YGR205W, hypothetical 3 96.5 0.0014 4.9E-08 64.4 4.1 30 156-185 27-56 (290)
154 1kgd_A CASK, peripheral plasma 96.5 0.0016 5.4E-08 58.4 4.0 26 160-185 5-30 (180)
155 3tmk_A Thymidylate kinase; pho 96.5 0.0053 1.8E-07 58.2 7.8 29 159-187 4-32 (216)
156 1um8_A ATP-dependent CLP prote 96.5 0.0017 5.6E-08 64.7 4.5 32 159-190 71-102 (376)
157 2qby_B CDC6 homolog 3, cell di 96.5 0.0029 1E-07 61.8 6.0 29 156-184 41-69 (384)
158 3a00_A Guanylate kinase, GMP k 96.5 0.0013 4.5E-08 59.1 3.3 26 160-185 1-26 (186)
159 3pfi_A Holliday junction ATP-d 96.5 0.0018 6.2E-08 62.8 4.5 33 158-190 53-85 (338)
160 2r62_A Cell division protease 96.5 0.00065 2.2E-08 63.8 1.2 31 159-189 43-73 (268)
161 3d8b_A Fidgetin-like protein 1 96.5 0.0018 6.2E-08 64.6 4.5 32 158-189 115-146 (357)
162 1xwi_A SKD1 protein; VPS4B, AA 96.5 0.0018 6.1E-08 63.9 4.3 31 159-189 44-75 (322)
163 2qmh_A HPR kinase/phosphorylas 96.5 0.0017 5.9E-08 61.9 4.0 35 160-196 34-68 (205)
164 2chg_A Replication factor C sm 96.4 0.0027 9.1E-08 55.9 4.9 23 162-184 40-62 (226)
165 4i1u_A Dephospho-COA kinase; s 96.4 0.0021 7.1E-08 61.1 4.3 38 161-199 10-47 (210)
166 1sq5_A Pantothenate kinase; P- 96.4 0.0039 1.3E-07 61.1 6.2 28 158-185 78-105 (308)
167 2qp9_X Vacuolar protein sortin 96.4 0.0017 5.8E-08 64.9 3.7 32 159-190 83-114 (355)
168 3ec2_A DNA replication protein 96.4 0.0017 5.8E-08 57.6 3.2 25 160-184 38-62 (180)
169 1in4_A RUVB, holliday junction 96.4 0.0022 7.4E-08 63.3 4.2 30 159-188 50-79 (334)
170 1ixz_A ATP-dependent metallopr 96.3 0.0031 1.1E-07 58.9 4.9 31 160-190 49-79 (254)
171 2c9o_A RUVB-like 1; hexameric 96.3 0.005 1.7E-07 63.5 6.7 31 159-189 62-94 (456)
172 3n70_A Transport activator; si 96.3 0.0072 2.5E-07 52.3 6.8 24 161-184 25-48 (145)
173 1dek_A Deoxynucleoside monopho 96.3 0.0026 8.9E-08 61.4 4.2 40 161-200 2-41 (241)
174 3uk6_A RUVB-like 2; hexameric 96.3 0.0043 1.5E-07 60.6 5.8 27 160-186 70-96 (368)
175 3vfd_A Spastin; ATPase, microt 96.3 0.0027 9.4E-08 63.7 4.4 31 159-189 147-177 (389)
176 3te6_A Regulatory protein SIR3 96.3 0.0032 1.1E-07 63.2 4.8 37 148-184 33-69 (318)
177 2w58_A DNAI, primosome compone 96.2 0.0026 8.9E-08 57.1 3.7 25 160-184 54-78 (202)
178 4fcw_A Chaperone protein CLPB; 96.2 0.0055 1.9E-07 58.3 6.1 27 158-184 44-71 (311)
179 1iy2_A ATP-dependent metallopr 96.2 0.01 3.5E-07 56.4 7.9 31 160-190 73-103 (278)
180 1sxj_A Activator 1 95 kDa subu 96.2 0.0032 1.1E-07 66.1 4.4 32 159-190 76-107 (516)
181 1l8q_A Chromosomal replication 96.2 0.0052 1.8E-07 59.6 5.6 31 159-189 36-69 (324)
182 1u0j_A DNA replication protein 96.1 0.012 3.9E-07 58.1 7.9 57 128-186 72-130 (267)
183 1ye8_A Protein THEP1, hypothet 96.1 0.0031 1.1E-07 57.4 3.3 27 161-187 1-27 (178)
184 2v1u_A Cell division control p 96.1 0.0029 9.8E-08 61.3 3.2 28 157-184 41-68 (387)
185 1hqc_A RUVB; extended AAA-ATPa 96.0 0.0028 9.6E-08 60.7 2.9 31 159-189 37-67 (324)
186 3cf2_A TER ATPase, transitiona 96.0 0.0036 1.2E-07 70.1 4.1 33 158-190 236-268 (806)
187 1jr3_A DNA polymerase III subu 96.0 0.0052 1.8E-07 59.7 4.8 30 157-186 35-64 (373)
188 2zan_A Vacuolar protein sortin 96.0 0.0044 1.5E-07 64.0 4.3 31 159-189 166-197 (444)
189 3co5_A Putative two-component 96.0 0.0048 1.6E-07 53.4 3.9 28 161-189 28-55 (143)
190 3pvs_A Replication-associated 96.0 0.0051 1.7E-07 64.0 4.8 32 158-189 48-79 (447)
191 3ch4_B Pmkase, phosphomevalona 96.0 0.007 2.4E-07 57.4 5.3 41 159-199 10-53 (202)
192 3hu3_A Transitional endoplasmi 96.0 0.0072 2.5E-07 63.7 5.9 34 157-190 235-268 (489)
193 2qby_A CDC6 homolog 1, cell di 95.9 0.004 1.4E-07 60.1 3.7 28 157-184 42-69 (386)
194 2ce7_A Cell division protein F 95.9 0.0052 1.8E-07 64.8 4.7 33 158-190 47-79 (476)
195 1sxj_C Activator 1 40 kDa subu 95.9 0.0079 2.7E-07 58.9 5.6 27 158-185 45-71 (340)
196 1lvg_A Guanylate kinase, GMP k 95.9 0.0037 1.3E-07 57.1 2.9 26 160-185 4-29 (198)
197 2r44_A Uncharacterized protein 95.9 0.0041 1.4E-07 60.4 3.3 28 162-189 48-75 (331)
198 3ney_A 55 kDa erythrocyte memb 95.8 0.0059 2E-07 57.3 4.1 27 159-185 18-44 (197)
199 1fnn_A CDC6P, cell division co 95.8 0.011 3.6E-07 57.7 6.0 23 162-184 46-68 (389)
200 3m6a_A ATP-dependent protease 95.8 0.009 3.1E-07 63.4 5.9 32 158-189 106-137 (543)
201 3aez_A Pantothenate kinase; tr 95.8 0.0058 2E-07 60.7 4.1 28 157-184 87-114 (312)
202 3lnc_A Guanylate kinase, GMP k 95.7 0.0069 2.4E-07 56.0 4.2 25 160-184 27-52 (231)
203 1s96_A Guanylate kinase, GMP k 95.7 0.0066 2.3E-07 57.2 4.0 29 157-185 13-41 (219)
204 1sxj_D Activator 1 41 kDa subu 95.7 0.0079 2.7E-07 58.0 4.6 24 162-185 60-83 (353)
205 1ex7_A Guanylate kinase; subst 95.6 0.0057 2E-07 56.7 3.1 24 162-185 3-26 (186)
206 1xjc_A MOBB protein homolog; s 95.6 0.007 2.4E-07 55.5 3.6 25 160-184 4-28 (169)
207 1znw_A Guanylate kinase, GMP k 95.6 0.0075 2.6E-07 55.0 3.8 26 160-185 20-45 (207)
208 1a5t_A Delta prime, HOLB; zinc 95.6 0.011 3.9E-07 58.2 5.3 34 154-187 18-51 (334)
209 3cr8_A Sulfate adenylyltranfer 95.6 0.0063 2.1E-07 65.3 3.7 41 159-199 368-413 (552)
210 1sxj_B Activator 1 37 kDa subu 95.6 0.01 3.5E-07 56.2 4.8 26 158-184 41-66 (323)
211 1iqp_A RFCS; clamp loader, ext 95.6 0.011 3.6E-07 56.2 4.8 24 162-185 48-71 (327)
212 1z6g_A Guanylate kinase; struc 95.5 0.0077 2.6E-07 55.9 3.5 25 160-184 23-47 (218)
213 1g8p_A Magnesium-chelatase 38 95.5 0.0089 3E-07 57.7 4.0 25 162-186 47-71 (350)
214 1sxj_E Activator 1 40 kDa subu 95.5 0.0067 2.3E-07 58.9 3.1 26 158-184 35-60 (354)
215 4a74_A DNA repair and recombin 95.4 0.0076 2.6E-07 54.4 3.2 25 160-184 25-49 (231)
216 2ehv_A Hypothetical protein PH 95.4 0.0082 2.8E-07 54.9 3.4 22 160-181 30-51 (251)
217 3tqf_A HPR(Ser) kinase; transf 95.4 0.0066 2.3E-07 57.0 2.8 34 161-196 17-50 (181)
218 2ga8_A Hypothetical 39.9 kDa p 95.4 0.0068 2.3E-07 62.1 3.1 31 158-188 22-52 (359)
219 2chq_A Replication factor C sm 95.4 0.0087 3E-07 56.6 3.7 25 159-184 38-62 (319)
220 2w0m_A SSO2452; RECA, SSPF, un 95.4 0.0089 3E-07 53.7 3.5 25 160-184 23-47 (235)
221 2kjq_A DNAA-related protein; s 95.4 0.008 2.7E-07 53.0 3.1 25 160-184 36-60 (149)
222 2z4s_A Chromosomal replication 95.3 0.018 6E-07 59.5 5.9 25 160-184 130-154 (440)
223 1tue_A Replication protein E1; 95.3 0.029 9.9E-07 53.8 6.8 27 161-187 59-85 (212)
224 2wsm_A Hydrogenase expression/ 95.3 0.017 5.9E-07 52.1 5.1 27 159-185 29-55 (221)
225 3p32_A Probable GTPase RV1496/ 95.3 0.057 1.9E-06 53.9 9.2 33 156-188 75-110 (355)
226 1svm_A Large T antigen; AAA+ f 95.3 0.012 4E-07 60.3 4.3 33 157-189 166-198 (377)
227 1c9k_A COBU, adenosylcobinamid 95.2 0.0085 2.9E-07 55.7 2.9 26 162-188 1-26 (180)
228 3pxg_A Negative regulator of g 95.2 0.017 5.9E-07 59.9 5.3 27 158-184 199-225 (468)
229 2cvh_A DNA repair and recombin 95.1 0.012 4.3E-07 52.7 3.6 27 160-186 20-46 (220)
230 2r2a_A Uncharacterized protein 95.1 0.014 4.8E-07 54.4 4.0 26 158-183 3-28 (199)
231 2hf9_A Probable hydrogenase ni 95.1 0.016 5.3E-07 52.6 4.2 27 158-184 36-62 (226)
232 2dhr_A FTSH; AAA+ protein, hex 95.1 0.016 5.5E-07 61.4 4.9 32 159-190 63-94 (499)
233 1ypw_A Transitional endoplasmi 95.1 0.012 4.2E-07 65.4 4.0 33 158-190 236-268 (806)
234 2bjv_A PSP operon transcriptio 95.0 0.033 1.1E-06 52.3 6.3 26 160-185 29-54 (265)
235 3cf2_A TER ATPase, transitiona 94.9 0.011 3.8E-07 66.3 3.2 33 158-190 509-541 (806)
236 1np6_A Molybdopterin-guanine d 94.9 0.017 5.8E-07 52.8 3.8 25 160-184 6-30 (174)
237 2vp4_A Deoxynucleoside kinase; 94.9 0.016 5.6E-07 53.9 3.7 30 158-188 18-47 (230)
238 1htw_A HI0065; nucleotide-bind 94.9 0.017 5.9E-07 51.8 3.7 26 159-184 32-57 (158)
239 1n0w_A DNA repair protein RAD5 94.9 0.015 5.1E-07 53.0 3.4 24 160-183 24-47 (243)
240 2i3b_A HCR-ntpase, human cance 94.8 0.013 4.5E-07 53.9 2.9 23 162-184 3-25 (189)
241 1yrb_A ATP(GTP)binding protein 94.8 0.02 6.9E-07 53.1 4.2 31 158-188 12-44 (262)
242 2dr3_A UPF0273 protein PH0284; 94.8 0.015 5.2E-07 53.0 3.3 25 160-184 23-47 (247)
243 1r6b_X CLPA protein; AAA+, N-t 94.8 0.042 1.4E-06 59.8 7.2 31 159-189 486-517 (758)
244 2orw_A Thymidine kinase; TMTK, 94.6 0.02 7E-07 52.1 3.6 24 161-184 4-27 (184)
245 2eyu_A Twitching motility prot 94.6 0.019 6.6E-07 55.3 3.6 25 160-184 25-49 (261)
246 1w5s_A Origin recognition comp 94.6 0.039 1.3E-06 54.2 5.8 27 158-184 48-76 (412)
247 3pxi_A Negative regulator of g 94.6 0.033 1.1E-06 60.9 5.7 27 158-184 199-225 (758)
248 3kta_A Chromosome segregation 94.5 0.023 7.8E-07 50.1 3.6 27 160-186 26-52 (182)
249 3nbx_X ATPase RAVA; AAA+ ATPas 94.5 0.054 1.8E-06 57.4 7.1 25 162-186 43-67 (500)
250 2qgz_A Helicase loader, putati 94.5 0.021 7.2E-07 56.1 3.7 26 160-185 152-177 (308)
251 1cr0_A DNA primase/helicase; R 94.4 0.021 7.1E-07 54.7 3.3 25 160-184 35-59 (296)
252 3tif_A Uncharacterized ABC tra 94.3 0.02 6.8E-07 54.3 2.9 24 161-184 32-55 (235)
253 1moz_A ARL1, ADP-ribosylation 94.3 0.025 8.6E-07 48.8 3.4 24 158-181 16-39 (183)
254 3pxi_A Negative regulator of g 94.3 0.044 1.5E-06 59.9 5.9 27 158-184 518-545 (758)
255 1z2a_A RAS-related protein RAB 94.3 0.029 9.9E-07 47.3 3.6 25 159-183 4-28 (168)
256 2ce2_X GTPase HRAS; signaling 94.2 0.028 9.4E-07 47.0 3.2 23 161-183 4-26 (166)
257 1kao_A RAP2A; GTP-binding prot 94.2 0.031 1.1E-06 46.8 3.5 24 160-183 3-26 (167)
258 1nlf_A Regulatory protein REPA 94.2 0.025 8.5E-07 53.9 3.3 24 161-184 31-54 (279)
259 2pcj_A ABC transporter, lipopr 94.2 0.021 7.2E-07 53.6 2.7 24 161-184 31-54 (224)
260 1upt_A ARL1, ADP-ribosylation 94.1 0.043 1.5E-06 46.5 4.3 25 158-182 5-29 (171)
261 2f1r_A Molybdopterin-guanine d 94.1 0.016 5.3E-07 52.8 1.5 24 161-184 3-26 (171)
262 1ypw_A Transitional endoplasmi 94.0 0.014 4.7E-07 65.0 1.3 31 159-189 510-540 (806)
263 1ky3_A GTP-binding protein YPT 94.0 0.033 1.1E-06 47.6 3.4 26 158-183 6-31 (182)
264 3clv_A RAB5 protein, putative; 94.0 0.043 1.5E-06 47.4 4.2 26 158-183 5-30 (208)
265 2onk_A Molybdate/tungstate ABC 94.0 0.03 1E-06 53.5 3.4 24 161-184 25-48 (240)
266 1u8z_A RAS-related protein RAL 94.0 0.035 1.2E-06 46.6 3.5 24 160-183 4-27 (168)
267 1lw7_A Transcriptional regulat 94.0 0.029 9.9E-07 55.9 3.5 27 161-187 171-197 (365)
268 2wjg_A FEOB, ferrous iron tran 94.0 0.033 1.1E-06 48.4 3.4 24 160-183 7-30 (188)
269 2zts_A Putative uncharacterize 93.9 0.035 1.2E-06 50.5 3.7 24 160-183 30-53 (251)
270 2cbz_A Multidrug resistance-as 93.9 0.026 9E-07 53.5 2.9 24 161-184 32-55 (237)
271 1ksh_A ARF-like protein 2; sma 93.9 0.038 1.3E-06 48.0 3.7 26 158-183 16-41 (186)
272 2nzj_A GTP-binding protein REM 93.9 0.036 1.2E-06 47.2 3.5 24 159-182 3-26 (175)
273 1m2o_B GTP-binding protein SAR 93.9 0.033 1.1E-06 49.5 3.4 25 158-182 21-45 (190)
274 2lkc_A Translation initiation 93.9 0.043 1.5E-06 47.0 3.9 25 158-182 6-30 (178)
275 2ged_A SR-beta, signal recogni 93.9 0.041 1.4E-06 48.1 3.9 27 158-184 46-72 (193)
276 1nrj_B SR-beta, signal recogni 93.9 0.041 1.4E-06 49.4 3.9 27 158-184 10-36 (218)
277 2d2e_A SUFC protein; ABC-ATPas 93.8 0.033 1.1E-06 53.1 3.4 23 161-183 30-52 (250)
278 2hxs_A RAB-26, RAS-related pro 93.8 0.043 1.5E-06 47.0 3.7 25 159-183 5-29 (178)
279 1b0u_A Histidine permease; ABC 93.8 0.029 9.9E-07 54.1 2.9 24 161-184 33-56 (262)
280 2wji_A Ferrous iron transport 93.8 0.038 1.3E-06 47.7 3.4 22 161-182 4-25 (165)
281 1c1y_A RAS-related protein RAP 93.7 0.043 1.5E-06 46.2 3.6 24 160-183 3-26 (167)
282 1ji0_A ABC transporter; ATP bi 93.7 0.031 1.1E-06 53.0 2.9 24 161-184 33-56 (240)
283 3b85_A Phosphate starvation-in 93.7 0.026 9E-07 52.7 2.4 23 161-183 23-45 (208)
284 1oix_A RAS-related protein RAB 93.7 0.04 1.4E-06 49.1 3.5 25 160-184 29-53 (191)
285 1mv5_A LMRA, multidrug resista 93.7 0.031 1.1E-06 53.0 2.9 25 160-184 28-52 (243)
286 1g6h_A High-affinity branched- 93.7 0.031 1.1E-06 53.5 2.9 24 161-184 34-57 (257)
287 3gfo_A Cobalt import ATP-bindi 93.7 0.031 1.1E-06 54.6 2.9 24 161-184 35-58 (275)
288 2zu0_C Probable ATP-dependent 93.7 0.037 1.3E-06 53.5 3.4 23 161-183 47-69 (267)
289 2f9l_A RAB11B, member RAS onco 93.6 0.046 1.6E-06 48.7 3.8 23 161-183 6-28 (199)
290 4g1u_C Hemin import ATP-bindin 93.6 0.031 1.1E-06 54.1 2.9 24 161-184 38-61 (266)
291 2qen_A Walker-type ATPase; unk 93.6 0.041 1.4E-06 52.4 3.6 27 161-187 32-58 (350)
292 2fna_A Conserved hypothetical 93.6 0.053 1.8E-06 51.6 4.4 26 162-187 32-57 (357)
293 2dyk_A GTP-binding protein; GT 93.6 0.048 1.6E-06 45.8 3.6 23 162-184 3-25 (161)
294 2pze_A Cystic fibrosis transme 93.6 0.033 1.1E-06 52.4 2.9 24 161-184 35-58 (229)
295 2ff7_A Alpha-hemolysin translo 93.6 0.033 1.1E-06 53.2 2.9 24 161-184 36-59 (247)
296 1ek0_A Protein (GTP-binding pr 93.6 0.038 1.3E-06 46.6 2.9 23 161-183 4-26 (170)
297 2ewv_A Twitching motility prot 93.5 0.039 1.3E-06 55.9 3.5 25 160-184 136-160 (372)
298 3jvv_A Twitching mobility prot 93.5 0.04 1.4E-06 55.8 3.5 24 161-184 124-147 (356)
299 2v9p_A Replication protein E1; 93.5 0.04 1.4E-06 54.9 3.5 25 160-184 126-150 (305)
300 2fn4_A P23, RAS-related protei 93.5 0.048 1.6E-06 46.6 3.4 25 159-183 8-32 (181)
301 2olj_A Amino acid ABC transpor 93.5 0.035 1.2E-06 53.8 2.9 24 161-184 51-74 (263)
302 2fh5_B SR-beta, signal recogni 93.4 0.048 1.6E-06 48.7 3.6 27 158-184 5-31 (214)
303 2r8r_A Sensor protein; KDPD, P 93.4 0.078 2.7E-06 51.1 5.3 30 160-189 6-38 (228)
304 2a5y_B CED-4; apoptosis; HET: 93.4 0.2 6.7E-06 52.7 8.7 24 159-182 151-174 (549)
305 1z0j_A RAB-22, RAS-related pro 93.4 0.042 1.4E-06 46.4 2.9 24 160-183 6-29 (170)
306 3con_A GTPase NRAS; structural 93.4 0.041 1.4E-06 48.0 2.9 24 160-183 21-44 (190)
307 1sgw_A Putative ABC transporte 93.4 0.032 1.1E-06 52.5 2.3 24 161-184 36-59 (214)
308 2ixe_A Antigen peptide transpo 93.4 0.038 1.3E-06 53.6 2.9 24 161-184 46-69 (271)
309 2erx_A GTP-binding protein DI- 93.4 0.05 1.7E-06 45.9 3.4 23 160-182 3-25 (172)
310 3bc1_A RAS-related protein RAB 93.3 0.048 1.6E-06 47.0 3.3 25 159-183 10-34 (195)
311 1z08_A RAS-related protein RAB 93.3 0.046 1.6E-06 46.3 3.1 24 160-183 6-29 (170)
312 2yz2_A Putative ABC transporte 93.3 0.038 1.3E-06 53.2 2.9 24 161-184 34-57 (266)
313 2ghi_A Transport protein; mult 93.3 0.038 1.3E-06 53.1 2.9 24 161-184 47-70 (260)
314 1r6b_X CLPA protein; AAA+, N-t 93.3 0.074 2.5E-06 57.9 5.5 28 157-184 204-231 (758)
315 3sop_A Neuronal-specific septi 93.3 0.045 1.5E-06 53.0 3.4 24 161-184 3-26 (270)
316 1g16_A RAS-related protein SEC 93.3 0.051 1.7E-06 45.9 3.3 23 160-182 3-25 (170)
317 1vpl_A ABC transporter, ATP-bi 93.3 0.039 1.3E-06 53.2 2.9 24 161-184 42-65 (256)
318 1qvr_A CLPB protein; coiled co 93.3 0.053 1.8E-06 60.3 4.4 27 158-184 189-215 (854)
319 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.04 1.4E-06 47.1 2.7 24 160-183 7-30 (177)
320 2qi9_C Vitamin B12 import ATP- 93.3 0.04 1.4E-06 52.9 2.9 24 161-184 27-50 (249)
321 1ko7_A HPR kinase/phosphatase; 93.2 0.048 1.6E-06 54.8 3.5 34 161-196 145-178 (314)
322 2vhj_A Ntpase P4, P4; non- hyd 93.2 0.048 1.6E-06 55.4 3.6 25 161-185 124-148 (331)
323 1fzq_A ADP-ribosylation factor 93.2 0.069 2.4E-06 46.9 4.2 26 158-183 14-39 (181)
324 1r2q_A RAS-related protein RAB 93.2 0.042 1.4E-06 46.3 2.7 24 160-183 6-29 (170)
325 2ihy_A ABC transporter, ATP-bi 93.2 0.04 1.4E-06 53.8 2.9 24 161-184 48-71 (279)
326 2b8t_A Thymidine kinase; deoxy 93.2 0.053 1.8E-06 51.6 3.7 31 160-190 12-45 (223)
327 4dsu_A GTPase KRAS, isoform 2B 93.2 0.048 1.6E-06 47.0 3.0 25 160-184 4-28 (189)
328 4gzl_A RAS-related C3 botulinu 93.1 0.059 2E-06 48.4 3.7 27 157-183 27-53 (204)
329 2a9k_A RAS-related protein RAL 93.1 0.059 2E-06 46.2 3.5 25 159-183 17-41 (187)
330 1ojl_A Transcriptional regulat 93.1 0.054 1.8E-06 53.0 3.6 26 159-184 24-49 (304)
331 2nq2_C Hypothetical ABC transp 93.0 0.044 1.5E-06 52.6 2.8 24 161-184 32-55 (253)
332 1vg8_A RAS-related protein RAB 93.0 0.061 2.1E-06 47.4 3.4 26 158-183 6-31 (207)
333 2gno_A DNA polymerase III, gam 92.9 0.085 2.9E-06 52.0 4.8 25 160-184 18-42 (305)
334 2gj8_A MNME, tRNA modification 92.9 0.064 2.2E-06 46.9 3.5 24 160-183 4-27 (172)
335 1f6b_A SAR1; gtpases, N-termin 92.9 0.085 2.9E-06 47.2 4.4 33 150-182 15-47 (198)
336 1svi_A GTP-binding protein YSX 92.9 0.069 2.3E-06 46.6 3.7 25 159-183 22-46 (195)
337 2gza_A Type IV secretion syste 92.9 0.043 1.5E-06 55.2 2.6 24 162-185 177-200 (361)
338 2gf0_A GTP-binding protein DI- 92.9 0.08 2.7E-06 46.3 4.0 25 158-182 6-30 (199)
339 3bwd_D RAC-like GTP-binding pr 92.8 0.076 2.6E-06 45.6 3.8 25 159-183 7-31 (182)
340 3q85_A GTP-binding protein REM 92.8 0.072 2.5E-06 45.2 3.6 22 161-182 3-24 (169)
341 1knx_A Probable HPR(Ser) kinas 92.8 0.041 1.4E-06 55.3 2.3 34 161-196 148-181 (312)
342 1qvr_A CLPB protein; coiled co 92.8 0.052 1.8E-06 60.4 3.4 26 159-184 586-612 (854)
343 3tw8_B RAS-related protein RAB 92.8 0.056 1.9E-06 46.1 2.9 23 159-181 8-30 (181)
344 2e87_A Hypothetical protein PH 92.8 0.22 7.4E-06 49.5 7.6 26 158-183 165-190 (357)
345 2g6b_A RAS-related protein RAB 92.8 0.063 2.1E-06 46.0 3.2 25 159-183 9-33 (180)
346 1z0f_A RAB14, member RAS oncog 92.8 0.076 2.6E-06 45.2 3.7 25 160-184 15-39 (179)
347 3k1j_A LON protease, ATP-depen 92.8 0.058 2E-06 57.7 3.6 26 161-186 61-86 (604)
348 2efe_B Small GTP-binding prote 92.8 0.062 2.1E-06 46.1 3.1 25 159-183 11-35 (181)
349 1p9r_A General secretion pathw 92.7 0.062 2.1E-06 55.6 3.7 26 160-185 167-192 (418)
350 2zej_A Dardarin, leucine-rich 92.7 0.057 2E-06 47.4 2.9 22 161-182 3-24 (184)
351 2pjz_A Hypothetical protein ST 92.7 0.053 1.8E-06 52.5 2.9 24 161-184 31-54 (263)
352 1xx6_A Thymidine kinase; NESG, 92.7 0.12 4E-06 47.9 5.1 32 160-191 8-42 (191)
353 1m7b_A RND3/RHOE small GTP-bin 92.7 0.067 2.3E-06 46.7 3.3 25 159-183 6-30 (184)
354 3kkq_A RAS-related protein M-R 92.7 0.073 2.5E-06 46.0 3.5 24 160-183 18-41 (183)
355 2oil_A CATX-8, RAS-related pro 92.7 0.068 2.3E-06 46.8 3.3 25 159-183 24-48 (193)
356 1pui_A ENGB, probable GTP-bind 92.7 0.043 1.5E-06 48.8 2.0 24 159-182 25-48 (210)
357 2bov_A RAla, RAS-related prote 92.6 0.078 2.7E-06 46.6 3.7 24 160-183 14-37 (206)
358 1pzn_A RAD51, DNA repair and r 92.6 0.066 2.3E-06 53.6 3.5 26 159-184 130-155 (349)
359 3hr8_A Protein RECA; alpha and 92.6 0.061 2.1E-06 54.7 3.3 26 159-184 60-85 (356)
360 2y8e_A RAB-protein 6, GH09086P 92.6 0.061 2.1E-06 45.8 2.8 23 160-182 14-36 (179)
361 2atv_A RERG, RAS-like estrogen 92.6 0.088 3E-06 46.5 3.9 25 159-183 27-51 (196)
362 2www_A Methylmalonic aciduria 92.5 0.1 3.4E-06 52.3 4.8 25 160-184 74-98 (349)
363 2bme_A RAB4A, RAS-related prot 92.5 0.063 2.1E-06 46.4 2.9 24 160-183 10-33 (186)
364 3bh0_A DNAB-like replicative h 92.5 0.069 2.4E-06 52.4 3.5 26 159-184 67-92 (315)
365 3fvq_A Fe(3+) IONS import ATP- 92.5 0.061 2.1E-06 54.8 3.2 24 161-184 31-54 (359)
366 1r8s_A ADP-ribosylation factor 92.5 0.088 3E-06 44.4 3.7 22 162-183 2-23 (164)
367 2p67_A LAO/AO transport system 92.5 0.2 6.9E-06 49.7 6.8 28 157-184 53-80 (341)
368 2p5s_A RAS and EF-hand domain 92.5 0.092 3.1E-06 46.6 3.9 26 158-183 26-51 (199)
369 1zj6_A ADP-ribosylation factor 92.4 0.089 3.1E-06 45.9 3.8 25 158-182 14-38 (187)
370 3q72_A GTP-binding protein RAD 92.4 0.072 2.5E-06 45.0 3.0 21 161-181 3-23 (166)
371 1z47_A CYSA, putative ABC-tran 92.3 0.072 2.5E-06 54.1 3.4 24 161-184 42-65 (355)
372 3t1o_A Gliding protein MGLA; G 92.3 0.098 3.4E-06 45.2 3.9 25 160-184 14-38 (198)
373 2yyz_A Sugar ABC transporter, 92.3 0.074 2.5E-06 54.1 3.4 24 161-184 30-53 (359)
374 1z06_A RAS-related protein RAB 92.3 0.089 3E-06 46.0 3.5 25 159-183 19-43 (189)
375 2it1_A 362AA long hypothetical 92.2 0.074 2.5E-06 54.1 3.4 24 161-184 30-53 (362)
376 3tkl_A RAS-related protein RAB 92.2 0.081 2.8E-06 46.1 3.2 25 159-183 15-39 (196)
377 1mh1_A RAC1; GTP-binding, GTPa 92.2 0.1 3.4E-06 44.8 3.8 23 160-182 5-27 (186)
378 2qm8_A GTPase/ATPase; G protei 92.2 0.093 3.2E-06 52.3 4.0 28 157-184 52-79 (337)
379 3rlf_A Maltose/maltodextrin im 92.2 0.075 2.6E-06 54.6 3.4 24 161-184 30-53 (381)
380 3t5g_A GTP-binding protein RHE 92.2 0.065 2.2E-06 46.2 2.5 23 160-182 6-28 (181)
381 1zd9_A ADP-ribosylation factor 92.2 0.081 2.8E-06 46.5 3.2 25 159-183 21-45 (188)
382 3oes_A GTPase rhebl1; small GT 92.1 0.087 3E-06 46.8 3.3 24 159-182 23-46 (201)
383 2zr9_A Protein RECA, recombina 92.1 0.077 2.6E-06 53.4 3.3 26 159-184 60-85 (349)
384 2bbs_A Cystic fibrosis transme 92.1 0.065 2.2E-06 52.7 2.7 24 161-184 65-88 (290)
385 3upu_A ATP-dependent DNA helic 92.1 0.19 6.4E-06 51.7 6.2 23 162-184 47-69 (459)
386 1g29_1 MALK, maltose transport 92.1 0.081 2.8E-06 53.9 3.4 24 161-184 30-53 (372)
387 3czq_A Putative polyphosphate 92.1 0.27 9.2E-06 49.3 7.1 57 121-186 56-112 (304)
388 1x3s_A RAS-related protein RAB 92.0 0.091 3.1E-06 45.6 3.3 24 160-183 15-38 (195)
389 1v43_A Sugar-binding transport 92.0 0.081 2.8E-06 54.1 3.4 24 161-184 38-61 (372)
390 2pt7_A CAG-ALFA; ATPase, prote 92.0 0.056 1.9E-06 53.8 2.2 24 162-185 173-196 (330)
391 3reg_A RHO-like small GTPase; 92.0 0.085 2.9E-06 46.4 3.1 26 158-183 21-46 (194)
392 3lxx_A GTPase IMAP family memb 92.0 0.09 3.1E-06 48.6 3.4 25 159-183 28-52 (239)
393 3ihw_A Centg3; RAS, centaurin, 92.0 0.11 3.7E-06 46.0 3.7 25 159-183 19-43 (184)
394 3cph_A RAS-related protein SEC 92.0 0.11 3.9E-06 45.9 3.9 24 159-182 19-42 (213)
395 2cxx_A Probable GTP-binding pr 92.0 0.09 3.1E-06 45.5 3.1 22 162-183 3-24 (190)
396 3c5c_A RAS-like protein 12; GD 91.9 0.1 3.5E-06 46.1 3.5 25 159-183 20-44 (187)
397 3pqc_A Probable GTP-binding pr 91.9 0.11 3.6E-06 45.0 3.6 23 161-183 24-46 (195)
398 2h17_A ADP-ribosylation factor 91.9 0.089 3E-06 45.8 3.1 25 159-183 20-44 (181)
399 2z43_A DNA repair and recombin 91.9 0.092 3.1E-06 51.6 3.5 25 160-184 107-131 (324)
400 3end_A Light-independent proto 91.8 0.16 5.5E-06 48.7 5.1 33 158-190 39-74 (307)
401 2b6h_A ADP-ribosylation factor 91.8 0.11 3.8E-06 46.1 3.7 25 158-182 27-51 (192)
402 3d31_A Sulfate/molybdate ABC t 91.8 0.066 2.3E-06 54.2 2.4 24 161-184 27-50 (348)
403 2i1q_A DNA repair and recombin 91.7 0.09 3.1E-06 51.2 3.2 25 159-183 97-121 (322)
404 3lda_A DNA repair protein RAD5 91.7 0.086 2.9E-06 54.3 3.2 23 161-183 179-201 (400)
405 1u94_A RECA protein, recombina 91.7 0.1 3.4E-06 52.8 3.7 26 159-184 62-87 (356)
406 2iwr_A Centaurin gamma 1; ANK 91.7 0.083 2.8E-06 45.4 2.6 24 160-183 7-30 (178)
407 3nh6_A ATP-binding cassette SU 91.7 0.056 1.9E-06 53.7 1.7 24 161-184 81-104 (306)
408 2gf9_A RAS-related protein RAB 91.7 0.12 4.1E-06 45.2 3.7 24 160-183 22-45 (189)
409 1v5w_A DMC1, meiotic recombina 91.6 0.12 4E-06 51.5 3.9 25 159-183 121-145 (343)
410 2q3h_A RAS homolog gene family 91.6 0.13 4.3E-06 45.4 3.8 24 159-182 19-42 (201)
411 1z6t_A APAF-1, apoptotic prote 91.6 0.097 3.3E-06 54.6 3.5 25 158-182 145-169 (591)
412 3tui_C Methionine import ATP-b 91.6 0.098 3.3E-06 53.5 3.4 24 161-184 55-78 (366)
413 3izq_1 HBS1P, elongation facto 91.5 0.18 6.2E-06 54.4 5.6 28 157-184 164-191 (611)
414 2xtp_A GTPase IMAP family memb 91.5 0.12 4E-06 48.3 3.7 27 158-184 20-46 (260)
415 1f2t_A RAD50 ABC-ATPase; DNA d 91.5 0.13 4.5E-06 45.2 3.8 25 160-184 23-47 (149)
416 2fg5_A RAB-22B, RAS-related pr 91.5 0.096 3.3E-06 46.2 2.9 24 160-183 23-46 (192)
417 2yv5_A YJEQ protein; hydrolase 91.5 0.15 5.2E-06 49.9 4.6 24 161-185 166-189 (302)
418 3dz8_A RAS-related protein RAB 91.5 0.13 4.6E-06 45.1 3.8 25 160-184 23-47 (191)
419 3ug7_A Arsenical pump-driving 91.4 0.28 9.5E-06 49.0 6.5 39 156-194 22-64 (349)
420 3gd7_A Fusion complex of cysti 91.4 0.097 3.3E-06 53.8 3.2 24 161-184 48-71 (390)
421 2x77_A ADP-ribosylation factor 91.4 0.096 3.3E-06 45.7 2.8 24 158-181 20-43 (189)
422 3k53_A Ferrous iron transport 91.4 0.12 4.1E-06 49.0 3.6 23 161-183 4-26 (271)
423 4bas_A ADP-ribosylation factor 91.3 0.12 3.9E-06 45.2 3.2 24 159-182 16-39 (199)
424 2npi_A Protein CLP1; CLP1-PCF1 91.3 0.089 3.1E-06 55.1 2.9 24 161-184 139-162 (460)
425 1zbd_A Rabphilin-3A; G protein 91.3 0.13 4.6E-06 45.3 3.6 24 160-183 8-31 (203)
426 2j1l_A RHO-related GTP-binding 91.3 0.12 4E-06 46.8 3.3 24 159-182 33-56 (214)
427 1oxx_K GLCV, glucose, ABC tran 91.3 0.065 2.2E-06 54.2 1.7 24 161-184 32-55 (353)
428 3f9v_A Minichromosome maintena 91.3 0.05 1.7E-06 58.5 0.9 27 161-187 328-354 (595)
429 1zcb_A G alpha I/13; GTP-bindi 91.2 0.13 4.4E-06 52.2 3.9 25 158-182 31-55 (362)
430 2bcg_Y Protein YP2, GTP-bindin 91.2 0.11 3.7E-06 46.1 3.0 23 160-182 8-30 (206)
431 2a5j_A RAS-related protein RAB 91.2 0.15 5E-06 44.8 3.8 24 160-183 21-44 (191)
432 2oap_1 GSPE-2, type II secreti 91.2 0.088 3E-06 55.8 2.7 25 161-185 261-285 (511)
433 3iqw_A Tail-anchored protein t 91.2 0.18 6.2E-06 50.4 4.8 37 157-193 13-53 (334)
434 2r6a_A DNAB helicase, replicat 91.1 0.12 4E-06 53.3 3.5 25 160-184 203-227 (454)
435 2h57_A ADP-ribosylation factor 91.1 0.11 3.7E-06 45.5 2.8 25 159-183 20-44 (190)
436 2qu8_A Putative nucleolar GTP- 91.0 0.14 4.9E-06 46.6 3.7 24 159-182 28-51 (228)
437 2o52_A RAS-related protein RAB 91.0 0.11 3.8E-06 46.3 2.8 24 159-182 24-47 (200)
438 3e1s_A Exodeoxyribonuclease V, 91.0 0.2 6.9E-06 53.7 5.3 31 161-191 205-238 (574)
439 3gee_A MNME, tRNA modification 91.0 0.41 1.4E-05 50.2 7.5 25 159-183 232-256 (476)
440 1gwn_A RHO-related GTP-binding 90.9 0.14 4.7E-06 46.4 3.3 25 159-183 27-51 (205)
441 1nij_A Hypothetical protein YJ 90.8 0.095 3.3E-06 51.5 2.4 24 161-184 5-28 (318)
442 3zq6_A Putative arsenical pump 90.8 0.19 6.5E-06 49.4 4.5 35 160-194 14-52 (324)
443 3kjh_A CO dehydrogenase/acetyl 90.7 0.15 5.1E-06 46.3 3.4 29 162-190 2-33 (254)
444 1p6x_A Thymidine kinase; P-loo 90.7 0.096 3.3E-06 52.9 2.3 28 159-186 6-33 (334)
445 1u0l_A Probable GTPase ENGC; p 90.6 0.12 4E-06 50.5 2.7 24 161-184 170-193 (301)
446 3vkg_A Dynein heavy chain, cyt 90.6 0.95 3.3E-05 57.7 11.3 68 116-185 862-931 (3245)
447 2fv8_A H6, RHO-related GTP-bin 90.5 0.15 5E-06 45.7 3.2 23 160-182 25-47 (207)
448 2ew1_A RAS-related protein RAB 90.5 0.14 4.7E-06 46.4 3.0 25 159-183 25-49 (201)
449 3cbq_A GTP-binding protein REM 90.5 0.13 4.3E-06 46.1 2.7 22 160-181 23-44 (195)
450 2il1_A RAB12; G-protein, GDP, 90.4 0.17 5.8E-06 44.7 3.4 23 160-182 26-48 (192)
451 2rcn_A Probable GTPase ENGC; Y 90.4 0.15 5.1E-06 52.0 3.4 25 161-185 216-240 (358)
452 3lxw_A GTPase IMAP family memb 90.4 0.16 5.4E-06 47.9 3.4 26 158-183 19-44 (247)
453 2fu5_C RAS-related protein RAB 90.4 0.11 3.7E-06 44.9 2.0 23 160-182 8-30 (183)
454 3llu_A RAS-related GTP-binding 90.3 0.15 5.1E-06 45.2 3.0 25 159-183 19-43 (196)
455 2f7s_A C25KG, RAS-related prot 90.3 0.18 6.3E-06 45.0 3.6 24 160-183 25-48 (217)
456 3qks_A DNA double-strand break 90.3 0.16 5.4E-06 46.8 3.2 27 160-186 23-49 (203)
457 3th5_A RAS-related C3 botulinu 89.7 0.054 1.8E-06 48.2 0.0 25 158-182 28-52 (204)
458 2gco_A H9, RHO-related GTP-bin 90.2 0.17 5.7E-06 45.1 3.2 24 160-183 25-48 (201)
459 2j0v_A RAC-like GTP-binding pr 90.2 0.18 6E-06 45.0 3.3 25 159-183 8-32 (212)
460 2q6t_A DNAB replication FORK h 90.2 0.15 5.2E-06 52.3 3.3 25 160-184 200-224 (444)
461 2atx_A Small GTP binding prote 90.1 0.19 6.6E-06 43.9 3.5 24 160-183 18-41 (194)
462 4b3f_X DNA-binding protein smu 90.0 0.16 5.6E-06 54.5 3.5 39 162-200 207-254 (646)
463 1tf7_A KAIC; homohexamer, hexa 89.9 0.16 5.3E-06 53.3 3.2 21 160-180 39-59 (525)
464 2hup_A RAS-related protein RAB 89.8 0.21 7.1E-06 44.6 3.5 24 160-183 29-52 (201)
465 1yqt_A RNAse L inhibitor; ATP- 89.8 0.17 5.8E-06 53.7 3.4 24 161-184 48-71 (538)
466 4a1f_A DNAB helicase, replicat 89.8 0.17 5.9E-06 51.0 3.3 25 160-184 46-70 (338)
467 1h65_A Chloroplast outer envel 89.7 0.26 8.8E-06 46.7 4.3 24 159-182 38-61 (270)
468 2cjw_A GTP-binding protein GEM 89.7 0.21 7.3E-06 44.4 3.5 23 161-183 7-29 (192)
469 1tq4_A IIGP1, interferon-induc 89.6 0.2 6.9E-06 51.9 3.7 26 159-184 68-93 (413)
470 1tf7_A KAIC; homohexamer, hexa 89.6 0.18 6E-06 52.9 3.3 24 161-184 282-305 (525)
471 1xp8_A RECA protein, recombina 89.5 0.19 6.6E-06 51.0 3.5 26 159-184 73-98 (366)
472 1ihu_A Arsenical pump-driving 89.4 0.31 1E-05 51.7 5.0 37 158-194 6-46 (589)
473 3bgw_A DNAB-like replicative h 89.3 0.19 6.4E-06 52.2 3.2 25 160-184 197-221 (444)
474 3q3j_B RHO-related GTP-binding 89.2 0.28 9.5E-06 44.5 3.9 24 160-183 27-50 (214)
475 4akg_A Glutathione S-transfera 89.2 0.76 2.6E-05 57.8 8.9 61 122-184 885-947 (2695)
476 3a1s_A Iron(II) transport prot 89.2 0.19 6.6E-06 47.8 3.0 23 160-182 5-27 (258)
477 4djt_A GTP-binding nuclear pro 89.2 0.098 3.3E-06 46.9 0.8 25 158-182 9-33 (218)
478 4dhe_A Probable GTP-binding pr 89.1 0.13 4.6E-06 46.0 1.7 24 160-183 29-52 (223)
479 2qnr_A Septin-2, protein NEDD5 89.1 0.21 7.1E-06 48.9 3.2 23 160-182 18-40 (301)
480 3io5_A Recombination and repai 89.1 0.2 7E-06 50.9 3.2 23 162-184 30-52 (333)
481 2woo_A ATPase GET3; tail-ancho 89.1 0.36 1.2E-05 47.7 5.0 37 158-194 17-57 (329)
482 3cpj_B GTP-binding protein YPT 89.1 0.27 9.2E-06 44.5 3.8 24 160-183 13-36 (223)
483 2qag_B Septin-6, protein NEDD5 89.0 0.19 6.5E-06 52.5 3.0 21 163-183 45-65 (427)
484 3b1v_A Ferrous iron uptake tra 88.9 0.26 9E-06 47.6 3.7 24 160-183 3-26 (272)
485 3sfz_A APAF-1, apoptotic pepti 88.9 0.33 1.1E-05 54.1 5.0 26 158-183 145-170 (1249)
486 2j9r_A Thymidine kinase; TK1, 88.9 0.38 1.3E-05 45.8 4.8 31 160-190 28-61 (214)
487 3geh_A MNME, tRNA modification 88.9 0.5 1.7E-05 49.4 6.0 25 159-183 223-247 (462)
488 1ega_A Protein (GTP-binding pr 88.8 0.2 6.8E-06 48.9 2.8 23 160-182 8-30 (301)
489 2obl_A ESCN; ATPase, hydrolase 88.8 0.25 8.7E-06 49.7 3.7 34 409-450 312-345 (347)
490 2yc2_C IFT27, small RAB-relate 88.8 0.099 3.4E-06 45.8 0.6 24 160-183 20-43 (208)
491 3cio_A ETK, tyrosine-protein k 88.7 0.47 1.6E-05 46.3 5.4 33 158-190 102-138 (299)
492 3b5x_A Lipid A export ATP-bind 88.7 0.22 7.6E-06 52.9 3.3 24 161-184 370-393 (582)
493 1yqt_A RNAse L inhibitor; ATP- 88.6 0.23 7.9E-06 52.7 3.4 24 161-184 313-336 (538)
494 3euj_A Chromosome partition pr 88.6 0.23 8E-06 52.5 3.4 24 161-184 30-53 (483)
495 2dpy_A FLII, flagellum-specifi 88.5 0.26 8.9E-06 51.2 3.7 34 409-450 401-434 (438)
496 3i8s_A Ferrous iron transport 88.5 0.28 9.7E-06 46.9 3.7 24 160-183 3-26 (274)
497 3ozx_A RNAse L inhibitor; ATP 88.5 0.2 7E-06 53.3 2.9 23 162-184 296-318 (538)
498 1cp2_A CP2, nitrogenase iron p 88.5 0.39 1.3E-05 44.7 4.5 29 162-190 3-34 (269)
499 1byi_A Dethiobiotin synthase; 88.4 0.42 1.4E-05 43.2 4.5 29 162-190 3-35 (224)
500 3gj0_A GTP-binding nuclear pro 88.2 0.17 5.8E-06 45.6 1.8 23 159-181 14-36 (221)
No 1
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=98.79 E-value=8.6e-09 Score=97.00 Aligned_cols=82 Identities=18% Similarity=0.353 Sum_probs=65.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-H
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL-A 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL-~ 239 (473)
|+|+|.|+|||||+|+|..|++++|++++..+|.+|+.+.... .....+..|...+..|...+ .
T Consensus 1 M~Iil~GpPGsGKgTqa~~La~~~g~~~istGdllR~~i~~~t---------------~lg~~~~~~~~~G~lvpd~iv~ 65 (206)
T 3sr0_A 1 MILVFLGPPGAGKGTQAKRLAKEKGFVHISTGDILREAVQKGT---------------PLGKKAKEYMERGELVPDDLII 65 (206)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHHTC---------------HHHHHHHHHHHHTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHCCeEEcHHHHHHHHHHhcC---------------hhhhhHHHHHhcCCcCCHHHHH
Confidence 5899999999999999999999999999888899998876421 11235677888887887775 5
Q ss_pred HHHHHHHhCCCcEEEEcc
Q 011994 240 GDLKKAMKDGKPIIIEGI 257 (473)
Q Consensus 240 ~~IekaL~eG~sVIIEGv 257 (473)
..+...+....-+|+||.
T Consensus 66 ~lv~~~l~~~~~~ilDGf 83 (206)
T 3sr0_A 66 ALIEEVFPKHGNVIFDGF 83 (206)
T ss_dssp HHHHHHCCSSSCEEEESC
T ss_pred HHHHHhhccCCceEecCC
Confidence 667778887777889884
No 2
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=98.78 E-value=1.6e-08 Score=88.74 Aligned_cols=88 Identities=20% Similarity=0.211 Sum_probs=58.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH-hcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ-RLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~-~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|.+|+|+|+|||||||+|+.|+. .+|+.++ .+|.+++.+.+.. ..|...|... . .. .+...
T Consensus 1 M~~~I~i~G~~GsGKST~a~~L~~~~~~~~~i-~~d~~r~~~~~~~-------~~~~~~~~~~--~-~~------~~~~~ 63 (181)
T 1ly1_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYNI-NRDDYRQSIMAHE-------ERDEYKYTKK--K-EG------IVTGM 63 (181)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEEE-CHHHHHHHHTTSC-------CGGGCCCCHH--H-HH------HHHHH
T ss_pred CCeEEEEecCCCCCHHHHHHHHHhhcCCcEEe-cHHHHHHHhhCCC-------ccchhhhchh--h-hh------HHHHH
Confidence 478999999999999999999998 6888764 7899988764321 1121111100 0 00 11222
Q ss_pred HHHHHHHHH---hCCCcEEEEcccCCccc
Q 011994 238 LAGDLKKAM---KDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 238 L~~~IekaL---~eG~sVIIEGvhL~Pel 263 (473)
+...+..++ ..|..||+||++..+..
T Consensus 64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~~ 92 (181)
T 1ly1_A 64 QFDTAKSILYGGDSVKGVIISDTNLNPER 92 (181)
T ss_dssp HHHHHHHHHTSCSSCCEEEECSCCCSHHH
T ss_pred HHHHHHHHHhhccCCCeEEEeCCCCCHHH
Confidence 345566777 88999999998876543
No 3
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=98.76 E-value=3.9e-08 Score=87.55 Aligned_cols=84 Identities=24% Similarity=0.394 Sum_probs=57.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
.+|.+|+|+|+|||||||+++.|+.++|+.++ ..|.+++.+..... +. .......+. ..+...
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~i-~~D~~~~~~~~~~~--------~~-----~~~~~~~~~---~~~~~~ 65 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATGLRLPLL-SKDAFKEVMFDGLG--------WS-----DREWSRRVG---ATAIMM 65 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHHHHHHC--------CC-----SHHHHHHHH---HHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEe-cHHHHHHHHHHhcC--------cc-----chHHHHHhh---HHHHHH
Confidence 46789999999999999999999999999875 67888876543111 00 011111111 112333
Q ss_pred HHHHHHHHHhCCCcEEEEccc
Q 011994 238 LAGDLKKAMKDGKPIIIEGIH 258 (473)
Q Consensus 238 L~~~IekaL~eG~sVIIEGvh 258 (473)
+...+...+..|..||+|+.+
T Consensus 66 ~~~~~~~~l~~g~~vi~d~~~ 86 (193)
T 2rhm_A 66 LYHTAATILQSGQSLIMESNF 86 (193)
T ss_dssp HHHHHHHHHHTTCCEEEEECC
T ss_pred HHHHHHHHHhCCCeEEEecCC
Confidence 445566778899999999976
No 4
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=98.75 E-value=3.7e-08 Score=96.42 Aligned_cols=113 Identities=15% Similarity=0.231 Sum_probs=70.1
Q ss_pred ccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC-CCeEEcchhHHHH
Q 011994 120 LDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLN-LPNVLQTDMVYEL 198 (473)
Q Consensus 120 ~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg-~~~Vi~tD~ir~~ 198 (473)
..++.+++...+.+++... ........+|.+|+|+|+|||||||+|+.|+.+++ ...+++.|.+|..
T Consensus 5 ~~~s~~~~~~~~~~~~~~~------------l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~R~~ 72 (287)
T 1gvn_B 5 VNFTDKQFENRLNDNLEEL------------IQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTFKQQ 72 (287)
T ss_dssp TCCCHHHHHHHHHHHHHHH------------HTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHHHTT
T ss_pred cCCCHHHHHHHHHHHHHHH------------hccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHhHHh
Confidence 4556677777776666541 11122345689999999999999999999999983 3344588988854
Q ss_pred HhhCCCCCCCCCccccccccChHHHHHHHHhcc----hhhHhH-HHHHHHHHHhCCCcEEEEcccCCcc
Q 011994 199 LRTSTDAPLSSSPVWARNFSSSEELVTEFVREC----RIVRKG-LAGDLKKAMKDGKPIIIEGIHLDPS 262 (473)
Q Consensus 199 Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~----~~V~eg-L~~~IekaL~eG~sVIIEGvhL~Pe 262 (473)
+.+. ..++..|.... ...... ....++.++..|.+||+|+++..+.
T Consensus 73 ~~~~------------------~~~~~~~~~~a~~~~~~~~~~~~~~~v~~~l~~g~~vIld~~~~~~~ 123 (287)
T 1gvn_B 73 HPNF------------------DELVKLYEKDVVKHVTPYSNRMTEAIISRLSDQGYNLVIEGTGRTTD 123 (287)
T ss_dssp STTH------------------HHHHHHHGGGCHHHHHHHHHHHHHHHHHHHHHHTCCEEECCCCCCSH
T ss_pred chhh------------------HHHHHHccchhhhhhhHHHHHHHHHHHHHHHhcCCeEEEECCCCCHH
Confidence 2110 00111111100 001111 2345566788999999999988776
No 5
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=98.72 E-value=2.2e-08 Score=95.45 Aligned_cols=86 Identities=21% Similarity=0.329 Sum_probs=61.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e 236 (473)
.++|.+|+|.|+|||||+|+|..|++++|++++..+|.+|+.+.... + ....+..|...+..|..
T Consensus 26 ~~k~kiI~llGpPGsGKgTqa~~L~~~~g~~hIstGdllR~~i~~~t-------~--------lg~~~~~~~~~G~lVpd 90 (217)
T 3umf_A 26 LAKAKVIFVLGGPGSGKGTQCEKLVQKFHFNHLSSGDLLRAEVQSGS-------P--------KGKELKAMMERGELVPL 90 (217)
T ss_dssp TTSCEEEEEECCTTCCHHHHHHHHHHHHCCEEECHHHHHHHHHTTCC-------H--------HHHHHHHHHHHTCCCCH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHCCceEcHHHHHHHHHHcCC-------c--------hHHHHHHHHhcCCCCCH
Confidence 45788999999999999999999999999999877899998765321 1 12356677776666655
Q ss_pred HH-HHHHHHHH----hCCCcEEEEcc
Q 011994 237 GL-AGDLKKAM----KDGKPIIIEGI 257 (473)
Q Consensus 237 gL-~~~IekaL----~eG~sVIIEGv 257 (473)
.+ ...+...+ ..+.-+|+||.
T Consensus 91 e~~~~lv~~~l~~~~~~~~g~ilDGf 116 (217)
T 3umf_A 91 EVVLALLKEAMIKLVDKNCHFLIDGY 116 (217)
T ss_dssp HHHHHHHHHHHHHHTTTCSEEEEETB
T ss_pred HHHHHHHHHHHhhccccccCcccccC
Confidence 53 23333333 34556899983
No 6
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=98.61 E-value=1.2e-07 Score=83.79 Aligned_cols=41 Identities=27% Similarity=0.335 Sum_probs=34.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE-cchhHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL-QTDMVYELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi-~tD~ir~~L 199 (473)
+|.+|+|+|+|||||||+|+.|+++++.+++. ..|.+++.+
T Consensus 2 ~~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~~~~ 43 (178)
T 1qhx_A 2 TTRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLIEAM 43 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHhhhc
Confidence 46799999999999999999999999988663 578777653
No 7
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=98.60 E-value=1.1e-07 Score=84.21 Aligned_cols=41 Identities=20% Similarity=0.393 Sum_probs=34.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
+|++|+|.|+|||||||+|+.|++.+|++++..+|.++..+
T Consensus 2 ~~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~~~~~ 42 (196)
T 1tev_A 2 KPLVVFVLGGPGAGKGTQCARIVEKYGYTHLSAGELLRDER 42 (196)
T ss_dssp -CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHH
Confidence 47899999999999999999999999999875556666654
No 8
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=98.59 E-value=1.6e-07 Score=83.74 Aligned_cols=85 Identities=16% Similarity=0.286 Sum_probs=54.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcc-----h
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVREC-----R 232 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~-----~ 232 (473)
.++.+|+|.|++||||||+|+.|++++|++++..+|.++....... .. ...+..+...+ .
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~~~-------~~--------~~~i~~~~~~g~~~~~~ 71 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTGDLLRSEVSSGS-------AR--------GKKLSEIMEKGQLVPLE 71 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHTTC-------HH--------HHHHHHHHHTTCCCCHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHHcCC-------hH--------HHHHHHHHHcCCcCCHH
Confidence 3567999999999999999999999999998766666666543210 00 01111111111 1
Q ss_pred hhHhHHHHHHHHHHhCCCcEEEEcc
Q 011994 233 IVRKGLAGDLKKAMKDGKPIIIEGI 257 (473)
Q Consensus 233 ~V~egL~~~IekaL~eG~sVIIEGv 257 (473)
.+...+...+...+..|..+|+||.
T Consensus 72 ~~~~~~~~~i~~~~~~~~~vi~d~~ 96 (196)
T 2c95_A 72 TVLDMLRDAMVAKVNTSKGFLIDGY 96 (196)
T ss_dssp HHHHHHHHHHHHHTTTCSCEEEESC
T ss_pred HHHHHHHHHHHhccccCCcEEEeCC
Confidence 1222344555566778899999985
No 9
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=98.59 E-value=1.1e-07 Score=90.21 Aligned_cols=85 Identities=16% Similarity=0.217 Sum_probs=58.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRK 236 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~e 236 (473)
..+|++|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+.... + ....+..+......+..
T Consensus 26 ~~~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~~~~~r~~~~~~~-------~--------~g~~i~~~~~~g~~~~~ 90 (243)
T 3tlx_A 26 SKPDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLSTGDLLREAAEKKT-------E--------LGLKIKNIINEGKLVDD 90 (243)
T ss_dssp TSCCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHTTSSS-------H--------HHHHHHHHHHTTCCCCH
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHhCCeEEecHHHHHHHHhccc-------h--------HHHHHHHHHhcCCCCcH
Confidence 45789999999999999999999999999999877788888654211 0 11234444444433333
Q ss_pred HH-HHHHHHHHhC---CCcEEEEc
Q 011994 237 GL-AGDLKKAMKD---GKPIIIEG 256 (473)
Q Consensus 237 gL-~~~IekaL~e---G~sVIIEG 256 (473)
.+ ...+...+.. +..+|+||
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~ildg 114 (243)
T 3tlx_A 91 QMVLSLVDEKLKTPQCKKGFILDG 114 (243)
T ss_dssp HHHHHHHHHHTTSGGGSSEEEEES
T ss_pred HHHHHHHHHHHhcccccCCEEecC
Confidence 32 3344455543 77799998
No 10
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=98.58 E-value=1.8e-07 Score=83.69 Aligned_cols=42 Identities=19% Similarity=0.320 Sum_probs=35.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+|++|+|+|++||||||+|+.|++++|+.++..+|.++..+.
T Consensus 11 ~~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~d~~~~~~~~ 52 (199)
T 2bwj_A 11 KCKIIFIIGGPGSGKGTQCEKLVEKYGFTHLSTGELLREELA 52 (199)
T ss_dssp HSCEEEEEECTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHHHHHHHHHH
Confidence 467999999999999999999999999998755666676553
No 11
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=98.55 E-value=2.7e-07 Score=81.55 Aligned_cols=43 Identities=19% Similarity=0.299 Sum_probs=36.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
.+|.+|+|+|++||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus 4 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~d~~~~~~~~ 46 (194)
T 1qf9_A 4 SKPNVVFVLGGPGSGKGTQCANIVRDFGWVHLSAGDLLRQEQQ 46 (194)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred CcCcEEEEECCCCCCHHHHHHHHHHHhCCeEeeHHHHHHHHHh
Confidence 3578999999999999999999999999988755566776653
No 12
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=98.55 E-value=1.5e-07 Score=86.85 Aligned_cols=43 Identities=21% Similarity=0.359 Sum_probs=36.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+++++|+|.|+|||||||+|+.|+.++|+.++..+|.+++.+.
T Consensus 2 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~~ 44 (220)
T 1aky_A 2 SESIRMVLIGPPGAGKGTQAPNLQERFHAAHLATGDMLRSQIA 44 (220)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHcCceEEehhHHHHHHHH
Confidence 4578999999999999999999999999998766677787544
No 13
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=98.55 E-value=2.1e-07 Score=85.06 Aligned_cols=41 Identities=24% Similarity=0.470 Sum_probs=36.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+.|+|+|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~ 41 (216)
T 3fb4_A 1 MNIVLMGLPGAGKGTQAEQIIEKYEIPHISTGDMFRAAIKN 41 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEeeHHHHHHHHHhc
Confidence 36899999999999999999999999998777888887654
No 14
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=98.55 E-value=1.3e-07 Score=81.44 Aligned_cols=87 Identities=15% Similarity=0.150 Sum_probs=54.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhc-chhhHhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE-CRIVRKGLA 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q-~~~V~egL~ 239 (473)
++|+|+|+|||||||+|+.| ..+|+.++..+|.+++.+.... . .|. ........+... .. ..+.
T Consensus 2 ~~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~~~~~~~~~~~~~---~----~~~----~~~~~~~~~~~~~~~---~~~~ 66 (179)
T 3lw7_A 2 KVILITGMPGSGKSEFAKLL-KERGAKVIVMSDVVRKRYSIEA---K----PGE----RLMDFAKRLREIYGD---GVVA 66 (179)
T ss_dssp CEEEEECCTTSCHHHHHHHH-HHTTCEEEEHHHHHHHHHHHHC----------C----CHHHHHHHHHHHHCT---THHH
T ss_pred cEEEEECCCCCCHHHHHHHH-HHCCCcEEEHhHHHHHHHHhcC---C----Chh----HHHHHHHHHHhhCCH---HHHH
Confidence 58999999999999999999 9999998877888887654421 0 011 111222222221 11 1123
Q ss_pred HHHHHHH--hCCCcEEEEcccCCccc
Q 011994 240 GDLKKAM--KDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 240 ~~IekaL--~eG~sVIIEGvhL~Pel 263 (473)
..+...+ ..+..||+||. ..|..
T Consensus 67 ~~~~~~l~~~~~~~vi~dg~-~~~~~ 91 (179)
T 3lw7_A 67 RLCVEELGTSNHDLVVFDGV-RSLAE 91 (179)
T ss_dssp HHHHHHHCSCCCSCEEEECC-CCHHH
T ss_pred HHHHHHHHhcCCCeEEEeCC-CCHHH
Confidence 4444556 67888999996 54443
No 15
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=98.54 E-value=2.6e-07 Score=84.65 Aligned_cols=41 Identities=17% Similarity=0.434 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+.|+|+|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~d~~~r~~~~~ 41 (216)
T 3dl0_A 1 MNLVLMGLPGAGKGTQGERIVEKYGIPHISTGDMFRAAMKE 41 (216)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSSCCEEEHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCcEEeHHHHHHHHHhc
Confidence 36899999999999999999999999998777888887654
No 16
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=98.53 E-value=2.9e-07 Score=83.58 Aligned_cols=44 Identities=23% Similarity=0.433 Sum_probs=38.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
..+|++|+|.|+|||||||+|+.|+.++|++++..+|.+++.+.
T Consensus 17 ~~~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~d~~~r~~~~ 60 (201)
T 2cdn_A 17 RGSHMRVLLLGPPGAGKGTQAVKLAEKLGIPQISTGELFRRNIE 60 (201)
T ss_dssp CCSCCEEEEECCTTSSHHHHHHHHHHHHTCCEEEHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCcEEehhHHHHHHHH
Confidence 45788999999999999999999999999998766677777544
No 17
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=98.53 E-value=4.8e-07 Score=81.89 Aligned_cols=43 Identities=21% Similarity=0.243 Sum_probs=36.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
..+|++|+|+|++||||||+|+.|++++|+.++..+|.+++.+
T Consensus 12 ~~~~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d~~~~~~~ 54 (203)
T 1ukz_A 12 PDQVSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAGDLLRAEQ 54 (203)
T ss_dssp TTTCEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHHHHHHHHH
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHHHHcCceEEeHHHHHHHHH
Confidence 4567899999999999999999999999998875566666653
No 18
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=98.51 E-value=6.6e-07 Score=85.11 Aligned_cols=116 Identities=17% Similarity=0.244 Sum_probs=66.9
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC-CeEEcchhHHHHH
Q 011994 121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL-PNVLQTDMVYELL 199 (473)
Q Consensus 121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~-~~Vi~tD~ir~~L 199 (473)
..+.+++...+..++.. +........+|.+|+|+|+|||||||+|+.|+..++. .+++.+|.+|..+
T Consensus 5 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~r~~~ 72 (253)
T 2p5t_B 5 DYTDSEFKHALARNLRS------------LTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSFRSQH 72 (253)
T ss_dssp CCCHHHHHHHHHHHHHH------------HHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGGGTTS
T ss_pred hcCHHHHHHHHHHHHHH------------HHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHHHHhc
Confidence 45666666555554332 1222224456899999999999999999999999974 3455788887642
Q ss_pred hhCCCCCCCCCcccccccc-ChHHHHHHHHhcchhhHhHHHHHHHHHHhCCCcEEEEcccCCcc
Q 011994 200 RTSTDAPLSSSPVWARNFS-SSEELVTEFVRECRIVRKGLAGDLKKAMKDGKPIIIEGIHLDPS 262 (473)
Q Consensus 200 r~~~s~pL~~~~~W~~~y~-s~EelI~gf~~q~~~V~egL~~~IekaL~eG~sVIIEGvhL~Pe 262 (473)
... ......+. ...++...+. .++ +...+..++..|..+||||++..+.
T Consensus 73 ~~~--------~~i~~~~g~~~~~~~~~~~--~~~----~~~~~~~~~~~g~~vVid~~~~~~~ 122 (253)
T 2p5t_B 73 PHY--------LELQQEYGKDSVEYTKDFA--GKM----VESLVTKLSSLGYNLLIEGTLRTVD 122 (253)
T ss_dssp TTH--------HHHHTTCSSTTHHHHHHHH--HHH----HHHHHHHHHHTTCCEEEECCTTSSH
T ss_pred hhH--------HHHHHHcCchHHHHhhHHH--HHH----HHHHHHHHHhcCCCEEEeCCCCCHH
Confidence 110 00000000 0111211110 111 2344555677888999999877654
No 19
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=98.50 E-value=2.3e-07 Score=89.15 Aligned_cols=88 Identities=20% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG 237 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg 237 (473)
+|.+|+|+|+|||||||+|+.|+.++ |+.+ +.+|.+|+.+.... ..|...|.... .. .+...
T Consensus 1 M~~~I~l~G~~GsGKST~a~~L~~~~~~~~~-i~~D~~r~~~~~~~-------~g~~~~~~~~~---~~------~~~~~ 63 (301)
T 1ltq_A 1 MKKIILTIGCPGSGKSTWAREFIAKNPGFYN-INRDDYRQSIMAHE-------ERDEYKYTKKK---EG------IVTGM 63 (301)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHSTTEEE-ECHHHHHHHHTTSC-------CCC---CCHHH---HH------HHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhCCCcEE-ecccHHHHHhccCC-------cccccccchhh---hh------HHHHH
Confidence 47899999999999999999999975 7776 48888888764311 12211111000 00 11122
Q ss_pred HHHHHHHHH---hCCCcEEEEcccCCccc
Q 011994 238 LAGDLKKAM---KDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 238 L~~~IekaL---~eG~sVIIEGvhL~Pel 263 (473)
+...+..++ ..|..||+||.++.+..
T Consensus 64 ~~~~~~~~l~~~~~g~~vi~d~~~~~~~~ 92 (301)
T 1ltq_A 64 QFDTAKSILYGGDSVKGVIISDTNLNPER 92 (301)
T ss_dssp HHHHHHHHTTSCTTCCEEEECSCCCCHHH
T ss_pred HHHHHHHHHhhccCCCEEEEeCCCCCHHH
Confidence 345566778 88999999999887643
No 20
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=98.49 E-value=2e-07 Score=87.03 Aligned_cols=82 Identities=16% Similarity=0.270 Sum_probs=53.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhH-HH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKG-LA 239 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~eg-L~ 239 (473)
++|+|.|++||||||+|+.|+.++|+.++..+|.+|+.+.+.. + ....+..+...+..+... +.
T Consensus 1 m~I~l~G~~GsGKsT~a~~La~~lg~~~i~~dd~~r~~~~~~~-------~--------~g~~i~~~~~~g~~~~~~~~~ 65 (223)
T 2xb4_A 1 MNILIFGPNGSGKGTQGNLVKDKYSLAHIESGGIFREHIGGGT-------E--------LGKKAKEFIDRGDLVPDDITI 65 (223)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCEEEEHHHHHHHHTTTTC-------H--------HHHHHHHHHTTTCCCCHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEchHHHHHHHHHcCC-------H--------HHHHHHHHHHcCCcCcHHHHH
Confidence 4799999999999999999999999988766677777533210 0 012333333333332222 33
Q ss_pred HHHHHHHhC--CCcEEEEcc
Q 011994 240 GDLKKAMKD--GKPIIIEGI 257 (473)
Q Consensus 240 ~~IekaL~e--G~sVIIEGv 257 (473)
..+...+.. |..||+||.
T Consensus 66 ~~i~~~l~~~~g~~vIlDg~ 85 (223)
T 2xb4_A 66 PMVLETLESKGKDGWLLDGF 85 (223)
T ss_dssp HHHHHHHHHHCTTCEEEESC
T ss_pred HHHHHHHhcccCCeEEEeCC
Confidence 445556666 899999984
No 21
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=98.49 E-value=1.9e-07 Score=83.09 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=35.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
++++|+|.|++||||||+++.|++++|+.++..+|.+++.+.
T Consensus 3 ~g~~I~l~G~~GsGKST~~~~La~~l~~~~i~~d~~~~~~~~ 44 (186)
T 3cm0_A 3 VGQAVIFLGPPGAGKGTQASRLAQELGFKKLSTGDILRDHVA 44 (186)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHHHTCEEECHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHH
Confidence 467899999999999999999999999988755567776543
No 22
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=98.48 E-value=2.7e-07 Score=85.42 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=36.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+++.|+|.|+|||||||+|+.|+.++|++++..+|.+++.+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~ 46 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEYGLAHLSTGDMLREAIKN 46 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHHHT
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHhCceEEehhHHHHHHHHc
Confidence 3468999999999999999999999999987666777776543
No 23
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=98.47 E-value=3.3e-07 Score=85.06 Aligned_cols=42 Identities=17% Similarity=0.358 Sum_probs=35.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
.+|++|+|.|++||||||+|+.|++++|+.++..+|.++...
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~~~~~~~ 46 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTHFELKHLSSGDLLRDNM 46 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHHcCCeEEechHHHHHhh
Confidence 356899999999999999999999999999876667777754
No 24
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=98.42 E-value=3.9e-07 Score=82.78 Aligned_cols=37 Identities=30% Similarity=0.505 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
++|++|+|+|++||||||+|+.|+..+|+.++ .+|.+
T Consensus 16 ~~~~~I~l~G~~GsGKSTla~~L~~~lg~~~i-~~d~~ 52 (202)
T 3t61_A 16 RFPGSIVVMGVSGSGKSSVGEAIAEACGYPFI-EGDAL 52 (202)
T ss_dssp CCSSCEEEECSTTSCHHHHHHHHHHHHTCCEE-EGGGG
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCEEE-eCCcC
Confidence 34779999999999999999999999999976 55554
No 25
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=98.42 E-value=2e-07 Score=82.52 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQ 191 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~ 191 (473)
+|++|+|+|++||||||+|+.|++++|++++..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~l~~~~i~d 36 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHERLPGSFVFE 36 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHHSTTCEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCEEEc
Confidence 578999999999999999999999999998733
No 26
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=98.37 E-value=8.5e-07 Score=82.91 Aligned_cols=44 Identities=20% Similarity=0.298 Sum_probs=37.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
..++.|+|.|++||||||+|+.|+.++|+.++..+|.+++.+..
T Consensus 14 ~~~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~d~li~~~~~~ 57 (233)
T 1ak2_A 14 PKGVRAVLLGPPGAGKGTQAPKLAKNFCVCHLATGDMLRAMVAS 57 (233)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc
Confidence 45678999999999999999999999999987666777876543
No 27
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=98.37 E-value=5.6e-07 Score=82.78 Aligned_cols=41 Identities=22% Similarity=0.471 Sum_probs=36.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+.|+|.|+|||||||+|+.|++++|+.++..+|.+|+.+..
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~d~~~r~~~~~ 41 (214)
T 1e4v_A 1 MRIILLGAPVAGKGTQAQFIMEKYGIPQISTGDMLRAAVKS 41 (214)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHCCCEEEHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEeHHHHHHHHHHc
Confidence 36899999999999999999999999988777888887654
No 28
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=98.35 E-value=1.9e-06 Score=76.21 Aligned_cols=41 Identities=22% Similarity=0.319 Sum_probs=35.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~Lr 200 (473)
+++|+|.|+|||||||+++.|+.++| +.++..+|.+|+.+.
T Consensus 3 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~~~~~~r~~~~ 48 (192)
T 1kht_A 3 NKVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVSFGSVMFEVAK 48 (192)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEEHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEehHHHHHHHHh
Confidence 57899999999999999999999998 887755677777654
No 29
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=98.31 E-value=1.9e-06 Score=76.59 Aligned_cols=40 Identities=23% Similarity=0.174 Sum_probs=33.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
+.+|+|+|++||||||+|+.||+++|++++ .+|.+.+.+.
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i-~~d~~~~~~~ 44 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILY-DSDKEIEKRT 44 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEE-EHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEE-EChHHHHHHc
Confidence 458999999999999999999999999986 5666655433
No 30
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=98.30 E-value=1e-06 Score=84.30 Aligned_cols=40 Identities=33% Similarity=0.465 Sum_probs=34.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh---cCCCeE-EcchhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR---LNLPNV-LQTDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~---Lg~~~V-i~tD~ir~~ 198 (473)
++++|+|+|+|||||||+|+.|+.. +|+.++ +..|.+++.
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~~~~~ 46 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDLIRES 46 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHHHHTT
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchHHHHH
Confidence 4679999999999999999999998 788876 467877754
No 31
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=98.30 E-value=7.6e-07 Score=82.18 Aligned_cols=43 Identities=19% Similarity=0.398 Sum_probs=35.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
+|++|+|.|+|||||||+++.|++++|+.++..+|.++..+..
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d~~~~~~~~~ 46 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTKYQLAHISAGDLLRAEIAA 46 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHHHCCEECCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCceecHHHHHHHHHHc
Confidence 5678999999999999999999999999876555677775443
No 32
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=98.30 E-value=3.2e-06 Score=77.01 Aligned_cols=39 Identities=26% Similarity=0.366 Sum_probs=32.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+..+|+|+|+|||||||+++.|+..+|+.++..++.++.
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d~~~~~ 62 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLDWYIEE 62 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcchHHHHH
Confidence 345899999999999999999999999998744444444
No 33
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=98.27 E-value=3.7e-06 Score=73.42 Aligned_cols=37 Identities=32% Similarity=0.526 Sum_probs=31.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
++|+|.|++||||||+|+.|++++|++++ .+|.+...
T Consensus 1 m~I~l~G~~GsGKsT~a~~L~~~l~~~~i-~~d~~~~~ 37 (168)
T 2pt5_A 1 MRIYLIGFMCSGKSTVGSLLSRSLNIPFY-DVDEEVQK 37 (168)
T ss_dssp CEEEEESCTTSCHHHHHHHHHHHHTCCEE-EHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE-ECcHHHHH
Confidence 47999999999999999999999999976 55555443
No 34
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=98.18 E-value=1.1e-06 Score=78.34 Aligned_cols=39 Identities=31% Similarity=0.357 Sum_probs=32.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
+++|+|+|+|||||||+|+.|++++|++++ ..|.+++.+
T Consensus 2 ~~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~D~~~~~~ 40 (184)
T 2iyv_A 2 APKAVLVGLPGSGKSTIGRRLAKALGVGLL-DTDVAIEQR 40 (184)
T ss_dssp CCSEEEECSTTSSHHHHHHHHHHHHTCCEE-EHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCEE-eCchHHHHH
Confidence 457999999999999999999999999986 566555443
No 35
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=98.18 E-value=5.8e-06 Score=73.33 Aligned_cols=36 Identities=36% Similarity=0.456 Sum_probs=30.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+|+|+|+|||||||+|+.||.++|++++ .+|.+.+.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~-d~d~~~~~ 41 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFL-DSDFLIEQ 41 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEE-cccHHHHH
Confidence 6899999999999999999999999986 56655543
No 36
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=98.17 E-value=1.4e-06 Score=89.36 Aligned_cols=67 Identities=22% Similarity=0.372 Sum_probs=51.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL 238 (473)
.|.+|+|+|+|||||||+|+.|+.++|+.+| ..|.++. | ..+
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i-~~D~~~~---------------~----------------------~~~ 298 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHV-NRDTLGS---------------W----------------------QRC 298 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEEC-CGGGSCS---------------H----------------------HHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEE-ccchHHH---------------H----------------------HHH
Confidence 4789999999999999999999999998865 6665410 0 112
Q ss_pred HHHHHHHHhCCCcEEEEcccCCccc
Q 011994 239 AGDLKKAMKDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 239 ~~~IekaL~eG~sVIIEGvhL~Pel 263 (473)
...+..++..|.+||+|++++.+..
T Consensus 299 ~~~~~~~l~~g~~vIiD~~~~~~~~ 323 (416)
T 3zvl_A 299 VSSCQAALRQGKRVVIDNTNPDVPS 323 (416)
T ss_dssp HHHHHHHHHTTCCEEEESCCCSHHH
T ss_pred HHHHHHHHhcCCcEEEeCCCCCHHH
Confidence 3345567789999999998876543
No 37
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=98.17 E-value=4.4e-06 Score=80.65 Aligned_cols=83 Identities=20% Similarity=0.437 Sum_probs=59.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH-
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL- 238 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL- 238 (473)
.+.+-|.|+|||||||+|..|++++|++++..+|.+|+.+.... + ....+..|...+..|...+
T Consensus 8 ~~~~~~~G~pGsGKsT~a~~L~~~~g~~~is~gdllR~~~~~~t-------~--------lG~~i~~~~~~G~lvpdei~ 72 (230)
T 3gmt_A 8 HMRLILLGAPGAGKGTQANFIKEKFGIPQISTGDMLRAAVKAGT-------P--------LGVEAKTYMDEGKLVPDSLI 72 (230)
T ss_dssp -CEEEEECCTTSCHHHHHHHHHHHHTCCEECHHHHHHHHHHTTC-------H--------HHHHHHHHHTTTCCCCHHHH
T ss_pred ccceeeECCCCCCHHHHHHHHHHHhCCCeeechHHHHHhccCCC-------h--------HHHHHHHHHhhccccccHHH
Confidence 35789999999999999999999999999866788998765311 1 1235667776666665554
Q ss_pred HHHHHHHHhC---CCcEEEEcc
Q 011994 239 AGDLKKAMKD---GKPIIIEGI 257 (473)
Q Consensus 239 ~~~IekaL~e---G~sVIIEGv 257 (473)
...+...|.. +..+|+||.
T Consensus 73 ~~ll~~~l~~~~~~~g~ILDGf 94 (230)
T 3gmt_A 73 IGLVKERLKEADCANGYLFDGF 94 (230)
T ss_dssp HHHHHHHHHSGGGTTCEEEESC
T ss_pred HHHHHHHHhCcccCCCeEecCC
Confidence 3445555543 456889884
No 38
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=98.16 E-value=2.5e-06 Score=75.27 Aligned_cols=39 Identities=23% Similarity=0.272 Sum_probs=31.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVYELL 199 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir~~L 199 (473)
++|+|.|+|||||||+++.|+++++ +.++..+|.+++.+
T Consensus 2 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~~~~~ 45 (194)
T 1nks_A 2 KIGIVTGIPGVGKSTVLAKVKEILDNQGINNKIINYGDFMLATA 45 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEECChHHHHHH
Confidence 4799999999999999999999997 55553356666655
No 39
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=98.14 E-value=7.5e-06 Score=71.64 Aligned_cols=37 Identities=27% Similarity=0.395 Sum_probs=31.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.+|+|+|++||||||+|+.|+.++|++++ .+|.+...
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~i-d~d~~~~~ 39 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFV-DTDIFMQH 39 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEE-EHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEE-cccHHHHH
Confidence 47999999999999999999999999876 55655543
No 40
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=98.11 E-value=5.2e-06 Score=83.41 Aligned_cols=93 Identities=19% Similarity=0.210 Sum_probs=61.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccc--cHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDV--SQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I--~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|...|.++||.++++.+|..++++.+.+.++..- ..+.+.+.+++.|.+. ++... ...+........+|.+|+|.
T Consensus 59 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-l~~~~--~~~~~~~~~~~~~g~vi~lv 135 (328)
T 3e70_C 59 LEIDLLEADVALEVVDALREKIKQKLVGKKVRIGTDKGKIIEEAVKEAVSEI-LETSR--RIDLIEEIRKAEKPYVIMFV 135 (328)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHTTCEEECC---CHHHHHHHHHHHHHH-SCCSS--CCCHHHHHHSSCSSEEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcccCCccCHHHHHHHHHHHHHHHH-hCCcc--ccchhhhcccCCCCeEEEEE
Confidence 5567889999999999999999999987655321 1233444444443331 11110 01111112234578999999
Q ss_pred cCCCCcHHHHHHHHHHhc
Q 011994 167 GTACVGKSTIATQLAQRL 184 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L 184 (473)
|++||||||+++.|+..+
T Consensus 136 G~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 136 GFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CCTTSSHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHH
Confidence 999999999999999876
No 41
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=98.10 E-value=1.6e-05 Score=72.42 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=30.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
..+.+|+|.|++||||||+++.|+..+|..++ .+|.+
T Consensus 27 ~~g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i-~~d~~ 63 (200)
T 4eun_A 27 EPTRHVVVMGVSGSGKTTIAHGVADETGLEFA-EADAF 63 (200)
T ss_dssp -CCCEEEEECCTTSCHHHHHHHHHHHHCCEEE-EGGGG
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhhCCeEE-ccccc
Confidence 45679999999999999999999999998876 45544
No 42
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=98.07 E-value=2.1e-05 Score=69.45 Aligned_cols=36 Identities=22% Similarity=0.399 Sum_probs=30.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
...+|+|+|++||||||+++.|+..+|..++ .+|.+
T Consensus 7 ~g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i-~~d~~ 42 (175)
T 1knq_A 7 DHHIYVLMGVSGSGKSAVASEVAHQLHAAFL-DGDFL 42 (175)
T ss_dssp TSEEEEEECSTTSCHHHHHHHHHHHHTCEEE-EGGGG
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHhhCcEEE-eCccc
Confidence 3568999999999999999999999998876 55554
No 43
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=98.06 E-value=5.1e-06 Score=88.16 Aligned_cols=95 Identities=18% Similarity=0.238 Sum_probs=56.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC---Ce-EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL---PN-VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~---~~-Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~ 233 (473)
..|.+|+++|.|||||||+|+.|+++|++ .. +++.|.+++.+.+... . . ..|.... -.+|.....+
T Consensus 33 ~~~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~r~~~~~~~~--~--~----~~f~~~~--~~~~~~re~~ 102 (520)
T 2axn_A 33 NSPTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEYRREAVKQYS--S--Y----NFFRPDN--EEAMKVRKQC 102 (520)
T ss_dssp CCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHSCCC--C--G----GGGCTTC--HHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHHHHHhccCCc--c--c----cccCccc--HHHHHHHHHH
Confidence 45789999999999999999999999853 32 3567888877654311 0 0 1111000 0122111112
Q ss_pred hHhHHHHHHHHHH--hCCCcEEEEcccCCccc
Q 011994 234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDPSI 263 (473)
Q Consensus 234 V~egL~~~IekaL--~eG~sVIIEGvhL~Pel 263 (473)
+...+ ..+...| ..|..||+|+++.....
T Consensus 103 ~~~~l-~~~~~~L~~~~g~~VIvDat~~~~~~ 133 (520)
T 2axn_A 103 ALAAL-RDVKSYLAKEGGQIAVFDATNTTRER 133 (520)
T ss_dssp HHHHH-HHHHHHHHHSCCCEEEEESCCCSHHH
T ss_pred HHHHH-HHHHHHHHhcCCceEEecCCCCCHHH
Confidence 22222 2334445 57888999998877654
No 44
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=98.06 E-value=1.9e-05 Score=70.87 Aligned_cols=42 Identities=26% Similarity=0.365 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC--eEE----cchhHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLP--NVL----QTDMVYELLR 200 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~--~Vi----~tD~ir~~Lr 200 (473)
++++|+|.|++||||||+|+.|+++++.. ++. .++.+++.+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~~~~~~i~~~~~ 50 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIELKRDVYLTEWNSSDWIHDIIK 50 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHTTTSCEEEEETTCCCHHHHHHH
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHhhcCCEEEecCCcHHHHHHHHh
Confidence 46899999999999999999999999874 433 2456665544
No 45
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=98.02 E-value=4.5e-06 Score=73.43 Aligned_cols=35 Identities=31% Similarity=0.427 Sum_probs=30.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|+|.|++||||||+|+.||++||++++. +|.+..
T Consensus 9 ~i~l~G~~GsGKSTva~~La~~lg~~~id-~D~~~~ 43 (168)
T 1zuh_A 9 HLVLIGFMGSGKSSLAQELGLALKLEVLD-TDMIIS 43 (168)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHTCCEEE-HHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEE-ChHHHH
Confidence 89999999999999999999999999874 554443
No 46
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=98.01 E-value=1.9e-05 Score=78.22 Aligned_cols=101 Identities=23% Similarity=0.293 Sum_probs=67.5
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC 166 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~ 166 (473)
=|.+.|.++||.+.+|.++..++++.+.+.++. ..+++...+.+.|.+. ++.. .....+. ....+.+|+|.
T Consensus 35 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~-l~~~-----~~~~~l~~~~~~g~vi~lv 106 (302)
T 3b9q_A 35 ELEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKK-----NSKTELQLGFRKPAVIMIV 106 (302)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCC-------CCCSCCCCSSSCEEEEEE
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCc-----ccccccccccCCCcEEEEE
Confidence 467889999999999999999999998876542 3345555555555442 1110 0000011 13457899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLP-NVLQTDMVY 196 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir 196 (473)
|++||||||+++.||..+ +-. .+...|..+
T Consensus 107 G~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r 140 (302)
T 3b9q_A 107 GVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 140 (302)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred cCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccc
Confidence 999999999999999876 333 333456543
No 47
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=97.98 E-value=2.1e-05 Score=80.26 Aligned_cols=100 Identities=23% Similarity=0.299 Sum_probs=67.4
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEEc
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVCG 167 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~G 167 (473)
|...|.++||.+.++.++..++++.+.+.++. ..+++...+.+.|.+. ++.. . . ...+. ....|.+|+|.|
T Consensus 93 l~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~-l~~~-~---~-~~~l~l~~~~g~vi~lvG 164 (359)
T 2og2_A 93 LEEALLVSDFGPKITVRIVERLREDIMSGKLK--SGSEIKDALKESVLEM-LAKK-N---S-KTELQLGFRKPAVIMIVG 164 (359)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTSCC--SHHHHHHHHHHHHHHH-HCCC--------CSCCCCSSSSEEEEEEC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHH-hCCc-c---c-CCCcceecCCCeEEEEEc
Confidence 56789999999999999999999999877653 3345555555555441 1110 0 0 00011 234578999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCC-eEEcchhHH
Q 011994 168 TACVGKSTIATQLAQRL---NLP-NVLQTDMVY 196 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir 196 (473)
++||||||+++.||..+ +-. .+...|..+
T Consensus 165 ~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r 197 (359)
T 2og2_A 165 VNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFR 197 (359)
T ss_dssp CTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSC
T ss_pred CCCChHHHHHHHHHhhccccCCEEEEecccccc
Confidence 99999999999999876 333 333556543
No 48
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=97.97 E-value=2.4e-05 Score=76.05 Aligned_cols=37 Identities=24% Similarity=0.270 Sum_probs=31.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
.+|++|.|+|++||||||+|+.|+ .+|+++| .+|.+.
T Consensus 73 ~~~~iI~I~G~~GSGKSTva~~La-~lg~~~i-d~D~~~ 109 (281)
T 2f6r_A 73 SGLYVLGLTGISGSGKSSVAQRLK-NLGAYII-DSDHLG 109 (281)
T ss_dssp TTCEEEEEEECTTSCHHHHHHHHH-HHTCEEE-EHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH-HCCCcEE-ehhHHH
Confidence 457899999999999999999999 6899876 555553
No 49
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.97 E-value=6.4e-06 Score=71.56 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
++|+|.|++||||||+++.|++++|+.++ ..|.+..
T Consensus 2 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~i-~~d~~~~ 37 (173)
T 3kb2_A 2 TLIILEGPDCCFKSTVAAKLSKELKYPII-KGSSFEL 37 (173)
T ss_dssp CEEEEECSSSSSHHHHHHHHHHHHCCCEE-ECCCHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeee-cCccccc
Confidence 37999999999999999999999999976 5555443
No 50
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.95 E-value=6e-06 Score=72.46 Aligned_cols=38 Identities=39% Similarity=0.441 Sum_probs=31.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
++.+|+|+|++||||||+++.|+..+|+.++ .+|.+..
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~~~i-d~d~~~~ 40 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNMEFY-DSDQEIE 40 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTCEEE-EHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCCEE-eccHHHH
Confidence 3568999999999999999999999998875 5555543
No 51
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.94 E-value=5.9e-06 Score=73.46 Aligned_cols=40 Identities=33% Similarity=0.399 Sum_probs=33.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
++.+|+|+|+|||||||+++.|+.++|+.++..++.+++.
T Consensus 10 ~~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~d~~~~~~ 49 (180)
T 3iij_A 10 LLPNILLTGTPGVGKTTLGKELASKSGLKYINVGDLAREE 49 (180)
T ss_dssp CCCCEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHH
T ss_pred cCCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEHHHHHhhc
Confidence 4567899999999999999999999999987555555543
No 52
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=97.92 E-value=1.8e-05 Score=79.12 Aligned_cols=102 Identities=14% Similarity=0.219 Sum_probs=67.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEEE
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILVC 166 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI~ 166 (473)
=|...|.++||.+.+|.++..++++.+.+.++..-.+..|.+.+.++|...... .+...+. ....|.+|+|+
T Consensus 39 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-------~~~~~l~~~~~~~~vI~iv 111 (320)
T 1zu4_A 39 ELEDVLIQTDMGMKMVLKVSNLVRKKTKRDTSFENIKDALVESLYQAYTDNDWT-------NKKYRIDFKENRLNIFMLV 111 (320)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHCCTTCCHHHHHHHHHHHHHHHHHCSCC-----------CCCCCCTTSCEEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhhchhHHHHHHHHHHHHHHHhCccccc-------ccccCccccCCCCeEEEEE
Confidence 477889999999999999999999988876554323344444454544321100 0000111 13457899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPNVL-QTDMVY 196 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir 196 (473)
|++|+||||++..||..+ |...++ ..|..+
T Consensus 112 G~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r 145 (320)
T 1zu4_A 112 GVNGTGKTTSLAKMANYYAELGYKVLIAAADTFR 145 (320)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 999999999999999876 444433 456543
No 53
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.92 E-value=6.6e-06 Score=74.16 Aligned_cols=39 Identities=26% Similarity=0.354 Sum_probs=33.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh-cCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR-LNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~-Lg~~~Vi~tD~ir~ 197 (473)
++.+|+|+|++||||||+++.|+.+ +|++++..++.+++
T Consensus 9 ~~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d~~~~~ 48 (184)
T 1y63_A 9 KGINILITGTPGTGKTSMAEMIAAELDGFQHLEVGKLVKE 48 (184)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHHHHHHH
Confidence 4568999999999999999999999 79998755556665
No 54
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=97.90 E-value=2.5e-05 Score=83.23 Aligned_cols=98 Identities=21% Similarity=0.284 Sum_probs=64.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc--cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEE
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLL--DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILV 165 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~--~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI 165 (473)
=|...|..+||.+.++.+|..+++..+.+.+.. ......|.+.+.++|... ... +. | .-..+.+|+|
T Consensus 230 el~~~Ll~aDv~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~--~~~----Is----l-~i~~GeVI~L 298 (503)
T 2yhs_A 230 ELEEQLLIADVGVETTRKIITNLTEGASRKQLRDAEALYGLLKEEMGEILAKV--DEP----LN----V-EGKAPFVILM 298 (503)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHHHHHHTCCBGGGHHHHHHHHHHHHHHTT--BCC----CC----C-CSCTTEEEEE
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHhCCC--CCC----ce----e-eccCCeEEEE
Confidence 466779999999999999999999988875442 222233444444443321 000 00 1 2345789999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994 166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY 196 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir 196 (473)
+|++||||||+++.|+..+ +...++ ..|.++
T Consensus 299 VGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r 333 (503)
T 2yhs_A 299 VGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFR 333 (503)
T ss_dssp ECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTC
T ss_pred ECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccc
Confidence 9999999999999999876 334333 466654
No 55
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=97.90 E-value=1.2e-05 Score=72.03 Aligned_cols=40 Identities=25% Similarity=0.354 Sum_probs=32.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.+|.+|.|+|++||||||+++.|+.. |+.++..++.+++.
T Consensus 6 ~~~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d~~~~~~ 45 (203)
T 1uf9_A 6 KHPIIIGITGNIGSGKSTVAALLRSW-GYPVLDLDALAARA 45 (203)
T ss_dssp CCCEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHHHHHHHH
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHC-CCEEEcccHHHHHh
Confidence 45789999999999999999999998 99987544444544
No 56
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=97.89 E-value=9.6e-06 Score=74.21 Aligned_cols=39 Identities=23% Similarity=0.261 Sum_probs=33.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+.+|.|.|++||||||+++.|+..+|++++..++.+++.
T Consensus 5 ~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~ 43 (227)
T 1cke_A 5 APVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVL 43 (227)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehh
Confidence 568999999999999999999999999987556666654
No 57
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.86 E-value=3.4e-05 Score=80.98 Aligned_cols=100 Identities=15% Similarity=0.279 Sum_probs=67.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCccc-cc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLLD-VS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~-I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|.+.|.+++|.+.++..+..++++.+.+..+.. ++ .+.+...|.+-|.+. ++... .......+|.+|+|+
T Consensus 35 i~~~Ll~adv~~~~~~~~~~~v~~~~~~~~v~~~~~~~~~v~~~l~~eL~~~-L~~~~-------~~~~~~~~p~vIliv 106 (443)
T 3dm5_A 35 IQRALIQADVNVRLVLQLTREIQRRALEEKPPAGISKKEHIIKIVYEELTKF-LGTEA-------KPIEIKEKPTILLMV 106 (443)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTSSC-------CCCCCCSSSEEEEEE
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhccccccCCcHHHHHHHHHHHHHHH-hcCcc-------cccccCCCCeEEEEE
Confidence 557889999999999999999999988776532 22 344555555444331 11100 001112358999999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir 196 (473)
|++|+||||++..||..+ |..++ +..|.+|
T Consensus 107 G~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R 140 (443)
T 3dm5_A 107 GIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWR 140 (443)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSS
T ss_pred CcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcc
Confidence 999999999999999876 55543 3567654
No 58
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=97.84 E-value=4.2e-05 Score=68.43 Aligned_cols=43 Identities=33% Similarity=0.375 Sum_probs=33.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC---CCe-EEcchhHHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN---LPN-VLQTDMVYELL 199 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~~-Vi~tD~ir~~L 199 (473)
..++.+|+|.|++||||||+++.|+..++ ... ++..|.+++.+
T Consensus 10 ~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~~~~~~ 56 (186)
T 2yvu_A 10 IEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDWARTTV 56 (186)
T ss_dssp CSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHTTT
T ss_pred cCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHHHHHHH
Confidence 34578999999999999999999999884 333 34677776543
No 59
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=97.84 E-value=2.7e-05 Score=77.46 Aligned_cols=91 Identities=20% Similarity=0.243 Sum_probs=59.6
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
=|.+.|.++||.+.+|.++..++++ ..+. ....+.+.+.++|.... + +. + ...+|.+|+|+|
T Consensus 50 ~l~~~L~~~dv~~~~~~~~~~~~~~-----~~~~-~~~~~~~~l~~~l~~~~--~-----~~----~-~~~~~~vi~ivG 111 (306)
T 1vma_A 50 ELEELLIQADVGVETTEYILERLEE-----KDGD-ALESLKEIILEILNFDT--K-----LN----V-PPEPPFVIMVVG 111 (306)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHTT-----CCSC-HHHHHHHHHHHHTCSCC--C-----CC----C-CSSSCEEEEEEC
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHh-----cCHH-HHHHHHHHHHHHhCCCC--C-----Cc----c-cCCCCeEEEEEc
Confidence 4678889999999999999998876 1122 33334444444332110 0 01 1 134678999999
Q ss_pred CCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994 168 TACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir 196 (473)
++|+||||++..||..+ |...+ +..|..|
T Consensus 112 ~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r 144 (306)
T 1vma_A 112 VNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR 144 (306)
T ss_dssp CTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC
T ss_pred CCCChHHHHHHHHHHHHHhcCCEEEEEcccccc
Confidence 99999999999999876 44433 3556654
No 60
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.83 E-value=1.7e-05 Score=80.00 Aligned_cols=39 Identities=23% Similarity=0.427 Sum_probs=32.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
...+|.+|+|+||+||||||+|..||++++... ++.|.+
T Consensus 6 ~~~~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~ 44 (316)
T 3foz_A 6 KASLPKAIFLMGPTASGKTALAIELRKILPVEL-ISVDSA 44 (316)
T ss_dssp -CCCCEEEEEECCTTSCHHHHHHHHHHHSCEEE-EECCTT
T ss_pred cCCCCcEEEEECCCccCHHHHHHHHHHhCCCcE-Eecccc
Confidence 345678999999999999999999999999775 476653
No 61
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=97.83 E-value=1.7e-05 Score=71.29 Aligned_cols=36 Identities=22% Similarity=0.398 Sum_probs=30.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|.|+|++||||||+++.|+.++|++++..++..+.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d~~~~~ 39 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSGLLYRA 39 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccchHHHh
Confidence 899999999999999999999999998744444444
No 62
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=97.81 E-value=5.9e-05 Score=68.62 Aligned_cols=41 Identities=37% Similarity=0.319 Sum_probs=32.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCC-eEEcchhHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLP-NVLQTDMVYEL 198 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~-~Vi~tD~ir~~ 198 (473)
.++.+|+|.|++||||||+++.|+..+ |.. +++.+|.++..
T Consensus 23 ~~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~d~~~~~ 67 (200)
T 3uie_A 23 QKGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDGDNVRHG 67 (200)
T ss_dssp SCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecCchhhhH
Confidence 457899999999999999999999998 544 13466766643
No 63
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=97.81 E-value=1.5e-05 Score=74.08 Aligned_cols=45 Identities=31% Similarity=0.352 Sum_probs=34.9
Q ss_pred hccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 155 HHQRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 155 ~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
++....++|.|+|.+||||||+++.|++.+|++++..++.+++.+
T Consensus 7 ~~~~~~~iIgltG~~GSGKSTva~~L~~~lg~~vid~D~~~~~~~ 51 (192)
T 2grj_A 7 HHHHHHMVIGVTGKIGTGKSTVCEILKNKYGAHVVNVDRIGHEVL 51 (192)
T ss_dssp ---CCEEEEEEECSTTSSHHHHHHHHHHHHCCEEEEHHHHHHHHH
T ss_pred cccccceEEEEECCCCCCHHHHHHHHHHhcCCEEEECcHHHHHHH
Confidence 334445799999999999999999999999999876556655554
No 64
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=97.80 E-value=2.5e-05 Score=77.04 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=64.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHH-HHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 89 LSRMLTVTKIPNHVAIKIALEL-KKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~el-Kk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
|...|..+||.+.++.++..++ ++.+... .++.+.+...+.+.|.+. ++... . +.-..++.+|+|+|
T Consensus 45 l~~~L~~~dv~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~-l~~~~----~----~~~~~~g~vi~lvG 112 (296)
T 2px0_A 45 AEKLLQETGIKESTKTNTLKKLLRFSVEAG---GLTEENVVGKLQEILCDM-LPSAD----K----WQEPIHSKYIVLFG 112 (296)
T ss_dssp HHHHHHHSCCCHHHHHHHHHHHHHHHHSSS---CCCTTTHHHHHHHHHHTT-SCCGG----G----SCCCCCSSEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHhhccc---CCCHHHHHHHHHHHHHHH-hCCcc----c----ccccCCCcEEEEEC
Confidence 5678999999999999999999 5555543 334456666776666552 22110 0 11123577999999
Q ss_pred CCCCcHHHHHHHHHHhc----CCCeE-Ecchh
Q 011994 168 TACVGKSTIATQLAQRL----NLPNV-LQTDM 194 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L----g~~~V-i~tD~ 194 (473)
++|+||||++..||..+ |.... +..|.
T Consensus 113 ~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 113 STGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp STTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 99999999999999765 54433 34555
No 65
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=97.78 E-value=2.9e-05 Score=71.31 Aligned_cols=42 Identities=29% Similarity=0.332 Sum_probs=32.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCeE-EcchhHHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN----LPNV-LQTDMVYEL 198 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~V-i~tD~ir~~ 198 (473)
..++.+|+|.|++||||||+++.|+..++ ++.+ +..|.++..
T Consensus 22 ~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~r~~ 68 (211)
T 1m7g_A 22 NQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRFG 68 (211)
T ss_dssp TSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTTT
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHHhhh
Confidence 45678999999999999999999999875 3332 355666543
No 66
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=97.78 E-value=2e-05 Score=71.53 Aligned_cols=35 Identities=31% Similarity=0.484 Sum_probs=29.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
+++|.|.|++||||||+++.|+. +|++++ .+|.+.
T Consensus 2 ~~~i~l~G~~GsGKST~~~~La~-lg~~~i-d~d~~~ 36 (206)
T 1jjv_A 2 TYIVGLTGGIGSGKTTIANLFTD-LGVPLV-DADVVA 36 (206)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHT-TTCCEE-EHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHH-CCCccc-chHHHH
Confidence 46899999999999999999987 999986 455443
No 67
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=97.77 E-value=1.6e-05 Score=75.30 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=28.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
..+|++|.|+|++||||||+|+.|+..+|+++
T Consensus 19 ~~~~~iI~I~G~~GSGKST~a~~L~~~lg~~~ 50 (252)
T 1uj2_A 19 GGEPFLIGVSGGTASGKSSVCAKIVQLLGQNE 50 (252)
T ss_dssp --CCEEEEEECSTTSSHHHHHHHHHHHTTGGG
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhhhhc
Confidence 34688999999999999999999999999873
No 68
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=97.76 E-value=5.4e-05 Score=70.28 Aligned_cols=37 Identities=22% Similarity=0.355 Sum_probs=32.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
.++|.|.|++||||||+|+.||++||+++|. .|.+++
T Consensus 6 ~~iI~i~g~~GsGk~ti~~~la~~lg~~~~D-~~~~~~ 42 (201)
T 3fdi_A 6 QIIIAIGREFGSGGHLVAKKLAEHYNIPLYS-KELLDE 42 (201)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHTTCCEEC-HHHHHH
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHhCcCEEC-HHHHHH
Confidence 3589999999999999999999999999874 666655
No 69
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=97.75 E-value=3.6e-05 Score=80.41 Aligned_cols=101 Identities=15% Similarity=0.269 Sum_probs=66.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|.+.|.+++|.+.++..+..+++..+.+..+. .++ .+.+...|.+-|... .+... . ........|.+|+++
T Consensus 31 l~~~Ll~aDv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~v~~~v~~eL~~~-L~~~~----~--~~~~~~~~~~vI~lv 103 (433)
T 3kl4_A 31 LQKSLISSDVNVKLVFSLTAKIKERLNKEKPPSVLERKEWFISIVYDELSKL-FGGDK----E--PNVNPTKLPFIIMLV 103 (433)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHHHH-HCSSS----C--CCCSCCSSSEEEEEC
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHh-cCccc----c--ccccccCCCeEEEEE
Confidence 46778889999999999999999999877653 232 344444444443321 01000 0 001122358899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir 196 (473)
|++|+||||++..||..+ |..+. +..|..|
T Consensus 104 G~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~~r 137 (433)
T 3kl4_A 104 GVQGSGKTTTAGKLAYFYKKRGYKVGLVAADVYR 137 (433)
T ss_dssp CCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCSC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEEecCccc
Confidence 999999999999999777 55543 3556554
No 70
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=97.75 E-value=2.2e-05 Score=71.96 Aligned_cols=37 Identities=24% Similarity=0.467 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|++|.|.|++||||||+++.|+. +|++++ .+|.+..
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~-lg~~~i-d~D~~~~ 39 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFAD-LGINVI-DADIIAR 39 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH-TTCEEE-EHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHH-cCCEEE-EccHHHH
Confidence 578999999999999999999998 999876 5554443
No 71
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=97.75 E-value=0.00037 Score=65.83 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=28.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN--LPNV 189 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~V 189 (473)
..++.+|+|.|++||||||++..|+..++ +..+
T Consensus 23 ~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~ 57 (229)
T 4eaq_A 23 NAMSAFITFEGPEGSGKTTVINEVYHRLVKDYDVI 57 (229)
T ss_dssp CCCCEEEEEECCTTSCHHHHHHHHHHHHTTTSCEE
T ss_pred cCCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCce
Confidence 44678999999999999999999999986 4544
No 72
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=97.73 E-value=6.5e-05 Score=78.20 Aligned_cols=95 Identities=17% Similarity=0.194 Sum_probs=66.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc------cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL------DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLV 162 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~------~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~i 162 (473)
|.+.|.++||.+.++..+..++++.+.+.++. ......+.+.+..+|.... .. +. .....|.+
T Consensus 34 ~~~~Ll~adv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~----~~-----~~~~~~~v 102 (433)
T 2xxa_A 34 VRMALLEADVALPVVREFINRVKEKAVGHEVNKSLTPGQEFVKIVRNELVAAMGEEN--QT----LN-----LAAQPPAV 102 (433)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHHSSSCCCSSSCTTTTTHHHHHHHHHHHHCSSS--CC----CC-----CCSSSSEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhcccccccCChHHHHHHHHHHHHHHHhcccc--cc----cc-----ccCCCCeE
Confidence 66789999999999999999999999887653 2333445555555543210 00 00 02346889
Q ss_pred EEEEcCCCCcHHHHHHHHHHhc----CCCeEE-cchh
Q 011994 163 ILVCGTACVGKSTIATQLAQRL----NLPNVL-QTDM 194 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~L----g~~~Vi-~tD~ 194 (473)
|+|+|.+|+||||++..||..+ |.++.+ ..|.
T Consensus 103 I~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~ 139 (433)
T 2xxa_A 103 VLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADV 139 (433)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCC
Confidence 9999999999999999999766 555443 3454
No 73
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.72 E-value=2.4e-05 Score=73.45 Aligned_cols=40 Identities=23% Similarity=0.330 Sum_probs=35.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
+|.+|+|.|+|||||||+++.|++++|+..+..++.++..
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~ 65 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLREN 65 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHH
Confidence 4789999999999999999999999999887666776654
No 74
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.71 E-value=3.7e-05 Score=77.82 Aligned_cols=40 Identities=28% Similarity=0.429 Sum_probs=32.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH--HHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV--YELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i--r~~L 199 (473)
++.+|+|+||+||||||+|..||.+++... ++.|.+ +..|
T Consensus 2 ~~~~i~i~GptgsGKt~la~~La~~~~~~i-is~Ds~QvYr~~ 43 (322)
T 3exa_A 2 KEKLVAIVGPTAVGKTKTSVMLAKRLNGEV-ISGDSMQVYRGM 43 (322)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHTTTEEE-EECCGGGGBTTC
T ss_pred CCcEEEEECCCcCCHHHHHHHHHHhCccce-eecCcccceeee
Confidence 356899999999999999999999999765 577765 4444
No 75
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=97.69 E-value=2.3e-05 Score=71.57 Aligned_cols=38 Identities=34% Similarity=0.373 Sum_probs=32.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
|++|.|+|++||||||+++.|+..+|++++..++.++.
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d~~~~~ 40 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASELSMIYVDTGAMYRA 40 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCceecCChHHHH
Confidence 67899999999999999999999999998755555554
No 76
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=97.67 E-value=2.9e-05 Score=74.81 Aligned_cols=39 Identities=31% Similarity=0.288 Sum_probs=32.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
+|++|.|.|++||||||+++.|+.++|+.++..++.++.
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~ 46 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRI 46 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHH
Confidence 578999999999999999999999999998644444443
No 77
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=97.67 E-value=8.7e-05 Score=66.36 Aligned_cols=37 Identities=30% Similarity=0.483 Sum_probs=30.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
.+|+|+|+|||||||+++.|+..++...++..|.++.
T Consensus 3 ~ii~l~G~~GaGKSTl~~~L~~~~~g~~~i~~d~~~~ 39 (189)
T 2bdt_A 3 KLYIITGPAGVGKSTTCKRLAAQLDNSAYIEGDIINH 39 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSSEEEEEHHHHHT
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCCeEEEcccchhh
Confidence 4789999999999999999998887644557776654
No 78
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=97.67 E-value=2.6e-05 Score=79.25 Aligned_cols=36 Identities=22% Similarity=0.509 Sum_probs=31.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
++.+|+|+|++||||||+|..||..++... ++.|.+
T Consensus 6 m~~lI~I~GptgSGKTtla~~La~~l~~~i-is~Ds~ 41 (340)
T 3d3q_A 6 KPFLIVIVGPTASGKTELSIEVAKKFNGEI-ISGDSM 41 (340)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHTTEEE-EECCSS
T ss_pred CCceEEEECCCcCcHHHHHHHHHHHcCCce-eccccc
Confidence 456899999999999999999999999764 577765
No 79
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.67 E-value=3e-05 Score=78.91 Aligned_cols=37 Identities=24% Similarity=0.439 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
+++.+|+|+|++||||||||..||+++|..+ ++.|.+
T Consensus 38 ~~~~lIvI~GPTgsGKTtLa~~LA~~l~~ei-Is~Ds~ 74 (339)
T 3a8t_A 38 RKEKLLVLMGATGTGKSRLSIDLAAHFPLEV-INSDKM 74 (339)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHTTSCEEE-EECCSS
T ss_pred cCCceEEEECCCCCCHHHHHHHHHHHCCCcE-Eccccc
Confidence 4567999999999999999999999999875 477765
No 80
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=97.64 E-value=5.5e-05 Score=75.04 Aligned_cols=87 Identities=18% Similarity=0.136 Sum_probs=55.1
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHHHHHhhcCcccccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhc------cCCCe
Q 011994 88 LLSRMLTVTKIPNHVAIKIALELKKLLVDNSLLDVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHH------QRVPL 161 (473)
Q Consensus 88 lLsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~------~~~P~ 161 (473)
=|.+.|..+||.+.+|.++..++++.+. +++...+.+.|.+. ++.....+......+.. ...|.
T Consensus 34 ~l~~~L~~~dv~~~~~~~~~~~~~~~~~---------~~~~~~~~~~l~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~g~ 103 (304)
T 1rj9_A 34 ELEMALLAADVGLSATEEILQEVRASGR---------KDLKEAVKEKLVGM-LEPDERRATLRKLGFNPQKPKPVEPKGR 103 (304)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHTCC---------SSTTHHHHHHHTTT-TCTTCHHHHHHHTTCCCCCCCCCCCSSS
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHH-hCcccccccccccccccccccccCCCCe
Confidence 4778899999999999999999987654 22333334444331 22110000000001101 12577
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|.|.|++||||||++..|+..+
T Consensus 104 vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 104 VVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 99999999999999999999776
No 81
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=97.64 E-value=0.00011 Score=72.61 Aligned_cols=98 Identities=17% Similarity=0.276 Sum_probs=66.5
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHH-hhccCCCeEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTR-FHHQRVPLVILV 165 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~-~~~~~~P~iIlI 165 (473)
|.+.|.++||.+.+|.++..++++.+.+.++. .++. +.+...+.+-|... |+... .. +.-..+|.+|++
T Consensus 32 ~~~~L~~~dv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~-------~~~i~~~~~~~vi~i 103 (297)
T 1j8m_F 32 LQKSLISADVNVKLVFSLTNKIKERLKNEKPPTYIERREWFIKIVYDELSNL-FGGDK-------EPKVIPDKIPYVIML 103 (297)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHHCCCCTTCCHHHHHHHHHHHHHHHH-TTCSC-------CCCCSCSSSSEEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhccccccCChHHHHHHHHHHHHHHH-hcccc-------ccccccCCCCeEEEE
Confidence 66789999999999999999999999887763 3333 44555555555432 32210 00 111123789999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
.|++|+||||++..||..+ |...++ ..|.
T Consensus 104 ~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 104 VGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp ECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 9999999999999999776 554433 4453
No 82
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.64 E-value=8.6e-05 Score=74.94 Aligned_cols=36 Identities=28% Similarity=0.456 Sum_probs=31.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
+|.+|+|+|++||||||+|..||.++|..++ +.|.+
T Consensus 4 m~~~i~i~GptGsGKTtla~~La~~l~~~ii-s~Ds~ 39 (323)
T 3crm_A 4 LPPAIFLMGPTAAGKTDLAMALADALPCELI-SVDSA 39 (323)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHSCEEEE-EECTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCcEE-eccch
Confidence 4678999999999999999999999998765 55544
No 83
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=97.61 E-value=2.9e-05 Score=70.13 Aligned_cols=36 Identities=22% Similarity=0.216 Sum_probs=29.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
++|.|+|++||||||+++.|+. +|++++..++.+++
T Consensus 2 ~~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d~~~~~ 37 (204)
T 2if2_A 2 KRIGLTGNIGCGKSTVAQMFRE-LGAYVLDADKLIHS 37 (204)
T ss_dssp CEEEEEECTTSSHHHHHHHHHH-TTCEEEEHHHHHHG
T ss_pred eEEEEECCCCcCHHHHHHHHHH-CCCEEEEccHHHHH
Confidence 3799999999999999999999 99987644444443
No 84
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=97.61 E-value=0.00012 Score=76.16 Aligned_cols=99 Identities=15% Similarity=0.181 Sum_probs=68.0
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-ccc-HHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVS-QSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVC 166 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~-~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~ 166 (473)
|.+.|.++||.+.++.++..++++.+.+..+. .++ .+.+...+.+-|... |+... ..+.-. .|.+|+|+
T Consensus 34 ~~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~L~~~-~~~~~-------~~i~l~-~~~vi~i~ 104 (425)
T 2ffh_A 34 IRRALMDADVNLEVTRDFVERVREEALGKQVLESLTPAEVILATVYEALKEA-LGGEA-------RLPVLK-DRNLWFLV 104 (425)
T ss_dssp HHHHHHHTTCCHHHHHHHHHHHHHHHHTTTGGGCSCHHHHHHHHHHHHHHHH-TTSSC-------CCCCCC-SSEEEEEE
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHHH-hCCCc-------ccccCC-CCeEEEEE
Confidence 45789999999999999999999999887763 223 245666666555442 33210 011112 57899999
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCeE-EcchhHH
Q 011994 167 GTACVGKSTIATQLAQRL---NLPNV-LQTDMVY 196 (473)
Q Consensus 167 G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~ir 196 (473)
|++|+||||++..||..+ |.... +..|..+
T Consensus 105 G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r 138 (425)
T 2ffh_A 105 GLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR 138 (425)
T ss_dssp CCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSC
T ss_pred CCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccC
Confidence 999999999999999877 44433 3445443
No 85
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.61 E-value=3.5e-05 Score=80.27 Aligned_cols=39 Identities=41% Similarity=0.592 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchh--HHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDM--VYELL 199 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~--ir~~L 199 (473)
+.+|+|+||+||||||+|..||.+++... ++.|. ++..|
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~i-is~Ds~QvYr~l 42 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEV-INSDSMQVYKDI 42 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEE-EECCTTTTBSSC
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeE-eecCccceeccc
Confidence 45899999999999999999999999764 57776 45444
No 86
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.61 E-value=4.4e-05 Score=72.99 Aligned_cols=34 Identities=41% Similarity=0.654 Sum_probs=29.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMV 195 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~i 195 (473)
.+|+|+|++||||||+|..||.++|+.++ ..|.+
T Consensus 2 ~li~I~G~~GSGKSTla~~La~~~~~~~i-~~D~~ 35 (253)
T 2ze6_A 2 LLHLIYGPTCSGKTDMAIQIAQETGWPVV-ALDRV 35 (253)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCCEE-ECCSG
T ss_pred eEEEEECCCCcCHHHHHHHHHhcCCCeEE-eccHH
Confidence 37999999999999999999999999976 55554
No 87
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=97.58 E-value=0.0001 Score=71.22 Aligned_cols=38 Identities=16% Similarity=0.215 Sum_probs=31.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYEL 198 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~ 198 (473)
.+|+|.|++||||||+++.|+..+|+.++..++.++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~d~~~~~~ 86 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDCDTLIEQA 86 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeCcHHHHHH
Confidence 47999999999999999999999999987544444443
No 88
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=97.57 E-value=4.5e-05 Score=68.42 Aligned_cols=32 Identities=16% Similarity=0.130 Sum_probs=28.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi 190 (473)
++++|+|.|++||||||+++.|++++ |++++.
T Consensus 3 ~~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~ 35 (204)
T 2v54_A 3 RGALIVFEGLDKSGKTTQCMNIMESIPANTIKY 35 (204)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHTSCGGGEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHCCCceEE
Confidence 57899999999999999999999999 577653
No 89
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=97.55 E-value=5.8e-05 Score=70.54 Aligned_cols=41 Identities=24% Similarity=0.293 Sum_probs=34.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
..++.+|.|+|++||||||+++.|+..||++++..++.++.
T Consensus 13 ~~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~~~ 53 (236)
T 1q3t_A 13 KMKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMYRA 53 (236)
T ss_dssp -CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCeeEc
Confidence 34567999999999999999999999999998755555554
No 90
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=97.53 E-value=0.00012 Score=76.02 Aligned_cols=93 Identities=16% Similarity=0.255 Sum_probs=53.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe----EEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN----VLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~----Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~ 233 (473)
.+|.+|+++|.|||||||+++.|+..++... ++..|.++..+.+... ....|... .+ ..|.....+
T Consensus 37 ~~~~~IvlvGlpGsGKSTia~~La~~l~~~~~~t~~~~~d~~r~~~~g~~~----~~~ifd~~----g~--~~~r~re~~ 106 (469)
T 1bif_A 37 NCPTLIVMVGLPARGKTYISKKLTRYLNFIGVPTREFNVGQYRRDMVKTYK----SFEFFLPD----NE--EGLKIRKQC 106 (469)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHHHCSCC----CGGGGCTT----CH--HHHHHHHHH
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHHhccCCCceEEecchhhhhhccCCC----cccccCCC----CH--HHHHHHHHH
Confidence 4678999999999999999999999886332 2345557666544210 11223221 11 112222223
Q ss_pred hHhHHHHHHHHHH--hCCCcEEEEcccCCc
Q 011994 234 VRKGLAGDLKKAM--KDGKPIIIEGIHLDP 261 (473)
Q Consensus 234 V~egL~~~IekaL--~eG~sVIIEGvhL~P 261 (473)
+...+. .+..++ ..|..+|+|+++...
T Consensus 107 ~~~~l~-~~~~~l~~~~G~~vV~D~tn~~~ 135 (469)
T 1bif_A 107 ALAALN-DVRKFLSEEGGHVAVFDATNTTR 135 (469)
T ss_dssp HHHHHH-HHHHHHHTTCCSEEEEESCCCSH
T ss_pred HHHHHH-HHHHHHHhCCCCEEEEeCCCCCH
Confidence 333332 234455 466788899886644
No 91
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.53 E-value=5.9e-05 Score=66.67 Aligned_cols=30 Identities=30% Similarity=0.293 Sum_probs=27.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
++|+|+|++||||||+++.|++++ |++++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 1 MLIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 479999999999999999999998 898763
No 92
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=97.52 E-value=0.00015 Score=77.58 Aligned_cols=83 Identities=23% Similarity=0.254 Sum_probs=53.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC---C-eEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL---P-NVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRI 233 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~---~-~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~ 233 (473)
..+.+|+|+|.+||||||+|+.|+.+|+. . .++..|.+++.+.+. ..|.. .+... +
T Consensus 370 ~~~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~D~ir~~l~~~--------~~f~~-----~er~~-------~ 429 (546)
T 2gks_A 370 KQGFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDGDVVRTHLSRG--------LGFSK-----EDRIT-------N 429 (546)
T ss_dssp GCCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECHHHHHHHTCTT--------CCSSH-----HHHHH-------H
T ss_pred ccceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECchHhhhhhccc--------ccccH-----HHHHH-------H
Confidence 45789999999999999999999998863 3 345788888765321 01110 11111 1
Q ss_pred hHhHHHHHHHHHHhCCCcEEEEcccCCc
Q 011994 234 VRKGLAGDLKKAMKDGKPIIIEGIHLDP 261 (473)
Q Consensus 234 V~egL~~~IekaL~eG~sVIIEGvhL~P 261 (473)
+..+...+...+..|..||++++.+.+
T Consensus 430 -l~~i~~~~~~~l~~G~~VI~d~~~~~~ 456 (546)
T 2gks_A 430 -ILRVGFVASEIVKHNGVVICALVSPYR 456 (546)
T ss_dssp -HHHHHHHHHHHHHTTCEEEEECCCCCH
T ss_pred -HHHHHHHHHHHHhCCCEEEEEcCCCCH
Confidence 122333455567889999999776654
No 93
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=97.52 E-value=7.3e-05 Score=71.17 Aligned_cols=38 Identities=29% Similarity=0.278 Sum_probs=32.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYE 197 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~ 197 (473)
..+|.|.|++||||||+++.|+++||+.++..++.+|.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~ 64 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRV 64 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehH
Confidence 46899999999999999999999999998755555544
No 94
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=97.48 E-value=4.9e-05 Score=69.13 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=32.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeEEcchhHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPNVLQTDMVY 196 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~Vi~tD~ir 196 (473)
.++.+|.|+|++||||||+++.|+..+ ++.++..+|.++
T Consensus 19 ~~~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~D~~~~ 58 (207)
T 2qt1_A 19 SKTFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQDDFFK 58 (207)
T ss_dssp CCCEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEGGGGBC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeCCcccc
Confidence 346799999999999999999999988 788765555444
No 95
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=97.47 E-value=3.3e-05 Score=69.73 Aligned_cols=31 Identities=29% Similarity=0.249 Sum_probs=27.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
.+|++|+|+|++||||||+++.|+++++..+
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3578999999999999999999999987543
No 96
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=97.46 E-value=6.8e-05 Score=66.77 Aligned_cols=29 Identities=31% Similarity=0.515 Sum_probs=26.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
++|+|.|++||||||+++.|++++|..++
T Consensus 1 ~~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 1 MKIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CEEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 37899999999999999999999998654
No 97
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=97.42 E-value=4.2e-05 Score=68.97 Aligned_cols=28 Identities=32% Similarity=0.393 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+|++|+|.|++||||||+++.|+++++
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 7 RRGALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999999999875
No 98
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=97.42 E-value=9.4e-05 Score=65.80 Aligned_cols=30 Identities=37% Similarity=0.329 Sum_probs=26.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
++|+|.|++||||||+++.|++++ |++++.
T Consensus 1 ~~I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~ 33 (197)
T 2z0h_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVIL 33 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHCCC-EEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 379999999999999999999999 998763
No 99
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.41 E-value=0.00014 Score=64.75 Aligned_cols=41 Identities=32% Similarity=0.440 Sum_probs=32.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE-EcchhHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV-LQTDMVYEL 198 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V-i~tD~ir~~ 198 (473)
..+.+|+|.|+|||||||+++.|+..++...| +.+|.++..
T Consensus 7 ~~g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~~~~ 48 (191)
T 1zp6_A 7 LGGNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDLWGY 48 (191)
T ss_dssp CTTEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHHHHT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccchhhh
Confidence 44679999999999999999999988766533 456666553
No 100
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=97.39 E-value=0.00028 Score=73.45 Aligned_cols=99 Identities=20% Similarity=0.366 Sum_probs=63.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccHHH-HHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQSD-LEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV 165 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~~e-Le~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI 165 (473)
+...|.+++|.+.++.++..++++...+.++. .++... +...+.+.|.+. ++... ..+. ....|.+|+|
T Consensus 33 ~~~~Ll~adv~~~~~~~~~~~vk~~~~~~~~~~~~~~~~~~~~~~~~~l~~l-l~~~~-------~~~~~~~~~~~vI~i 104 (432)
T 2v3c_C 33 IQRALIQADVNVKLVLKMSKEIERRALEEKTPKGLSKKEHIIKIVYEELVKL-LGEEA-------KKLELNPKKQNVILL 104 (432)
T ss_dssp HHHHHHHTCCCHHHHHHHTHHHHHHHSSSCSSCSSCHHHHHHHHHHHHHHHH-HCCSC-------CCCCCCSSSCCCEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhccccccccCChHHHHHHHHHHHHHHH-hCCCC-------cCccccCCCCeEEEE
Confidence 44678899999999999999999988776443 344333 444444433321 00000 0011 2245789999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCeE-EcchhH
Q 011994 166 CGTACVGKSTIATQLAQRL---NLPNV-LQTDMV 195 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L---g~~~V-i~tD~i 195 (473)
+|++|+||||++..||..+ |...+ +..|..
T Consensus 105 vG~~GvGKTTla~~La~~l~~~G~kVllv~~D~~ 138 (432)
T 2v3c_C 105 VGIQGSGKTTTAAKLARYIQKRGLKPALIAADTY 138 (432)
T ss_dssp ECCSSSSTTHHHHHHHHHHHHHHCCEEEECCSCC
T ss_pred ECCCCCCHHHHHHHHHHHHHHcCCeEEEEecccc
Confidence 9999999999999999877 34433 345543
No 101
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=97.37 E-value=0.00057 Score=73.49 Aligned_cols=42 Identities=31% Similarity=0.322 Sum_probs=34.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL 199 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~-Vi~tD~ir~~L 199 (473)
.+|++|+|+|++||||||+|+.|+++|+ .++ ++.+|.+|..+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ir~~l 440 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDTVRHEL 440 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHHHHHHT
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHHHHHHh
Confidence 3578999999999999999999999986 553 44678888764
No 102
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=97.36 E-value=0.00032 Score=64.51 Aligned_cols=28 Identities=25% Similarity=0.402 Sum_probs=24.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++.+|+|+|++||||||+++.|+..+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3467999999999999999999998875
No 103
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=97.34 E-value=0.00028 Score=77.04 Aligned_cols=40 Identities=20% Similarity=0.278 Sum_probs=33.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc-chhHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ-TDMVYEL 198 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~-tD~ir~~ 198 (473)
+|++|+|+|.+||||||+|+.|+++| |++++.. .|.+|..
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDgD~iR~~ 94 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQG 94 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESHHHHTTT
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEechHHhhhc
Confidence 68899999999999999999999999 9887643 4666543
No 104
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.32 E-value=0.00021 Score=63.46 Aligned_cols=39 Identities=21% Similarity=0.344 Sum_probs=31.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVYE 197 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir~ 197 (473)
++.+|+|.|++||||||+++.|+..+ |++++. ..|.++.
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGDNIRQ 46 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHHTT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECChHHHH
Confidence 46789999999999999999999988 988763 3455544
No 105
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=97.32 E-value=0.00035 Score=74.27 Aligned_cols=98 Identities=14% Similarity=0.186 Sum_probs=61.8
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhh-ccCCCeEEEE
Q 011994 89 LSRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFH-HQRVPLVILV 165 (473)
Q Consensus 89 LsR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~-~~~~P~iIlI 165 (473)
|.+.|.++||.+.++.++..+++..+.+..+. .++. +.+...+.+.|.+. ++.. . ..+. ....|.+|+|
T Consensus 35 l~~~Ll~adv~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~eL~~l-l~~~-----~--~~~~~~~~~~~vI~i 106 (504)
T 2j37_W 35 VCTALLEADVNIKLVKQLRENVKSAIDLEEMASGLNKRKMIQHAVFKELVKL-VDPG-----V--KAWTPTKGKQNVIMF 106 (504)
T ss_dssp HHHHHCCTTTSSSTTHHHHHHHHHHHTTCCCCSSSCHHHHHHHHHHHHHHHH-HCCC-----C--CCCCCCSS--EEEEE
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHhhcCcccccCChHHHHHHHHHHHHHHH-hccc-----c--chhccccCCCeEEEE
Confidence 44788889999999999999999888876652 2222 23444444433321 0000 0 0011 1246789999
Q ss_pred EcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 166 CGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 166 ~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
+|++|+||||++..||..+ |....+ ..|.
T Consensus 107 vG~~GvGKTTl~~kLA~~l~~~G~kVllVd~D~ 139 (504)
T 2j37_W 107 VGLQGSGKTTTCSKLAYYYQRKGWKTCLICADT 139 (504)
T ss_dssp ECSTTSSHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred ECCCCCCHHHHHHHHHHHHHhCCCeEEEEeccc
Confidence 9999999999999999776 555443 4454
No 106
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=97.32 E-value=0.00013 Score=71.14 Aligned_cols=34 Identities=21% Similarity=0.408 Sum_probs=30.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|..++|.|+||+|||++|+.||..+|.+++.
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~ 66 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIM 66 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEE
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4568899999999999999999999999988763
No 107
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=97.28 E-value=0.00014 Score=66.34 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+..++.+|+|+|+|||||||+++.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 455678999999999999999999999885
No 108
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=97.27 E-value=0.0015 Score=61.43 Aligned_cols=84 Identities=26% Similarity=0.360 Sum_probs=49.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf 227 (473)
+.++|+|.|++||||||++..|++.| |+.++.. +..+++.+...... .|. +.....-|
T Consensus 5 ~g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~~p~~~~~g~~i~~~l~~~~~~------~~~-----~~~~~llf 73 (213)
T 4edh_A 5 TGLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTREPGGTPLAERIRELLLAPSDE------PMA-----ADTELLLM 73 (213)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEESSCSSHHHHHHHHHHHSCCSS------CCC-----HHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCcccccCCCCCHHHHHHHHHHhcCCCC------CCC-----HHHHHHHH
Confidence 46799999999999999999999988 4665431 12344444321100 011 11111112
Q ss_pred HhcchhhHhHHHHHHHHHHhCCCcEEEEc
Q 011994 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEG 256 (473)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIIEG 256 (473)
... + .+-+...|..++..|..||.|-
T Consensus 74 ~a~-R--~~~~~~~i~p~l~~g~~Vi~DR 99 (213)
T 4edh_A 74 FAA-R--AQHLAGVIRPALARGAVVLCDR 99 (213)
T ss_dssp HHH-H--HHHHHHTHHHHHHTTCEEEEES
T ss_pred HHH-H--HHHHHHHHHHHHHCCCEEEECc
Confidence 110 0 1124456778899999999886
No 109
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=97.25 E-value=0.00021 Score=67.93 Aligned_cols=41 Identities=17% Similarity=0.207 Sum_probs=35.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRT 201 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~ 201 (473)
.++|.|.|++||||||+|+.||++||+++| ..|.+++....
T Consensus 14 ~~iI~i~g~~gsGk~~i~~~la~~lg~~~~-d~~~~~~~a~~ 54 (223)
T 3hdt_A 14 NLIITIEREYGSGGRIVGKKLAEELGIHFY-DDDILKLASEK 54 (223)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHTCEEE-CHHHHHHHHHC
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHcCCcEE-cHHHHHHHHHH
Confidence 579999999999999999999999999987 48888875543
No 110
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=97.21 E-value=0.001 Score=65.40 Aligned_cols=86 Identities=17% Similarity=0.203 Sum_probs=58.9
Q ss_pred HHHHHHcCCChHHHHHHHHHHHHHHhhcCcc-cccH-HHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEc
Q 011994 90 SRMLTVTKIPNHVAIKIALELKKLLVDNSLL-DVSQ-SDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCG 167 (473)
Q Consensus 90 sR~L~~agVa~~vA~rIa~elKk~Lv~~~v~-~I~~-~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G 167 (473)
...|..+++.++.+..++.+++....+..+. ..+. +++...+.+-+.. .|+... ..+.-. .+.+|.|+|
T Consensus 35 ~~~Ll~ad~~~~~~~~l~d~v~~~~~g~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~-------~~i~~~-~~~~i~i~g 105 (295)
T 1ls1_A 35 RRALMDADVNLEVARDFVERVREEALGKQVLESLTPAEVILATVYEALKE-ALGGEA-------RLPVLK-DRNLWFLVG 105 (295)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTTTTCSCHHHHHHHHHHHHHHH-HTTSSC-------CCCCCC-SSEEEEEEC
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHHHccccccccCCcHHHHHHHHHHHHHH-HHCCCC-------ceeecC-CCeEEEEEC
Confidence 4778999999999999999999887776553 2333 4555544444433 122110 001112 567899999
Q ss_pred CCCCcHHHHHHHHHHhc
Q 011994 168 TACVGKSTIATQLAQRL 184 (473)
Q Consensus 168 ~~GsGKSTlA~~LA~~L 184 (473)
++|+||||++..||..+
T Consensus 106 ~~G~GKTT~~~~la~~~ 122 (295)
T 1ls1_A 106 LQGSGKTTTAAKLALYY 122 (295)
T ss_dssp CTTTTHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHH
Confidence 99999999999999766
No 111
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=97.12 E-value=0.00017 Score=65.37 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeEEcc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN--LPNVLQT 192 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~Vi~t 192 (473)
..+.+|.|.|++||||||+++.|+..++ +.++..+
T Consensus 4 ~~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~~d 40 (211)
T 3asz_A 4 PKPFVIGIAGGTASGKTTLAQALARTLGERVALLPMD 40 (211)
T ss_dssp -CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEEGG
T ss_pred CCcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEecC
Confidence 3567999999999999999999999888 7765433
No 112
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=97.12 E-value=0.00046 Score=65.30 Aligned_cols=32 Identities=28% Similarity=0.378 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..++|.|+||+||||+|+.||..++.+++
T Consensus 49 ~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~ 80 (285)
T 3h4m_A 49 EPPKGILLYGPPGTGKTLLAKAVATETNATFI 80 (285)
T ss_dssp CCCSEEEEESSSSSSHHHHHHHHHHHTTCEEE
T ss_pred CCCCeEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999998765
No 113
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=97.11 E-value=0.0013 Score=58.66 Aligned_cols=77 Identities=19% Similarity=0.249 Sum_probs=47.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhcchhhHhHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRECRIVRKGL 238 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q~~~V~egL 238 (473)
.+-++.|+|+|||||||+++.+. .|.. ++..|.++..+..... ... +.+ .+...+
T Consensus 8 ~gei~~l~G~nGsGKSTl~~~~~--~~~~-~~~~d~~~g~~~~~~~-----~~~-----------~~~------~~~~~~ 62 (171)
T 4gp7_A 8 ELSLVVLIGSSGSGKSTFAKKHF--KPTE-VISSDFCRGLMSDDEN-----DQT-----------VTG------AAFDVL 62 (171)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHS--CGGG-EEEHHHHHHHHCSSTT-----CGG-----------GHH------HHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHc--cCCe-EEccHHHHHHhcCccc-----chh-----------hHH------HHHHHH
Confidence 35689999999999999999854 3444 4578888765443211 000 000 111223
Q ss_pred HHHHHHHHhCCCcEEEEcccCC
Q 011994 239 AGDLKKAMKDGKPIIIEGIHLD 260 (473)
Q Consensus 239 ~~~IekaL~eG~sVIIEGvhL~ 260 (473)
.......+..|...+++..+..
T Consensus 63 ~~~~~~~~~~g~~~~~~~~~~~ 84 (171)
T 4gp7_A 63 HYIVSKRLQLGKLTVVDATNVQ 84 (171)
T ss_dssp HHHHHHHHHTTCCEEEESCCCS
T ss_pred HHHHHHHHhCCCeEEEECCCCC
Confidence 3344456678889999887665
No 114
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.08 E-value=0.00052 Score=71.63 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=30.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
...|.=||+.||||||||++|+.+|..+|.+++.
T Consensus 203 ~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~ 236 (428)
T 4b4t_K 203 IDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIR 236 (428)
T ss_dssp CCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEE
Confidence 3567789999999999999999999999988763
No 115
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=97.07 E-value=0.00095 Score=63.15 Aligned_cols=32 Identities=41% Similarity=0.543 Sum_probs=28.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..++|.|+||+|||++|+.|+..++.+++
T Consensus 48 ~~~~~vll~G~~GtGKT~la~~la~~l~~~~~ 79 (310)
T 1ofh_A 48 VTPKNILMIGPTGVGKTEIARRLAKLANAPFI 79 (310)
T ss_dssp CCCCCEEEECCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45667899999999999999999999988765
No 116
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=97.05 E-value=0.00045 Score=64.10 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..|+|.|+||+|||++|+.|+..++.+++
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 68 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEAQVPFL 68 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 45678999999999999999999999998865
No 117
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=97.04 E-value=0.0027 Score=60.97 Aligned_cols=29 Identities=24% Similarity=0.308 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLP 187 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~ 187 (473)
++.+|+|.|++||||||++..|+..| |++
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~~~~~~ 57 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQQNGID 57 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHHHTTCC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCCC
Confidence 46899999999999999999999988 555
No 118
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.02 E-value=0.00052 Score=71.78 Aligned_cols=34 Identities=26% Similarity=0.290 Sum_probs=30.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=||+.||||||||++|+.+|..+|.+++.
T Consensus 212 ~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~ 245 (434)
T 4b4t_M 212 IRAPKGALMYGPPGTGKTLLARACAAQTNATFLK 245 (434)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 4567899999999999999999999999988764
No 119
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=97.01 E-value=0.0021 Score=61.30 Aligned_cols=27 Identities=26% Similarity=0.214 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.++|+|.|++||||||++..|++.|
T Consensus 23 ~~g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 23 ARGKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCCCEEEEECCC---CHHHHHHHHHHH
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 356799999999999999999999988
No 120
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=97.00 E-value=0.00012 Score=71.78 Aligned_cols=37 Identities=22% Similarity=0.284 Sum_probs=26.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC-----CCeEEcchhHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN-----LPNVLQTDMVY 196 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg-----~~~Vi~tD~ir 196 (473)
++.+|.|+|++||||||+|+.|+..+| +.+ +.+|.+.
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~v-I~~D~~~ 45 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIFRREGVKAVS-IEGDAFH 45 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHHHHHTCCEEE-EEGGGGB
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeE-eecchhh
Confidence 467899999999999999999999887 454 4555443
No 121
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.99 E-value=0.00076 Score=70.59 Aligned_cols=34 Identities=21% Similarity=0.360 Sum_probs=30.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=||++||||||||++|+.||..+|.+++.
T Consensus 212 ~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~ 245 (437)
T 4b4t_L 212 IKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIF 245 (437)
T ss_dssp CCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 4567899999999999999999999999998764
No 122
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=96.93 E-value=0.00097 Score=64.80 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=28.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|..|+|.|+||+||||+|+.||..++.+++.
T Consensus 47 ~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~ 79 (301)
T 3cf0_A 47 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 79 (301)
T ss_dssp CCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEE
T ss_pred CCCceEEEECCCCcCHHHHHHHHHHHhCCCEEE
Confidence 456789999999999999999999999977653
No 123
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=96.92 E-value=0.0021 Score=61.28 Aligned_cols=30 Identities=27% Similarity=0.225 Sum_probs=25.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..++++|+|.|++||||||++..|++.|+.
T Consensus 18 ~~~~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 18 GPGSMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp -CCCEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 346889999999999999999999998643
No 124
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.92 E-value=0.0012 Score=62.61 Aligned_cols=33 Identities=24% Similarity=0.470 Sum_probs=29.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
...|..++|.|+||+|||++|+.++..++.+++
T Consensus 61 ~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~ 93 (272)
T 1d2n_A 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFI 93 (272)
T ss_dssp SCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEE
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 345678999999999999999999999998865
No 125
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.92 E-value=0.00055 Score=61.25 Aligned_cols=26 Identities=27% Similarity=0.460 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.+|.|+|++||||||+++.|+..+
T Consensus 5 ~g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 5 KGLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhh
Confidence 45689999999999999999999876
No 126
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.90 E-value=0.00073 Score=70.24 Aligned_cols=34 Identities=18% Similarity=0.274 Sum_probs=30.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=||+.||||||||++|+.+|..+|.+++.
T Consensus 179 i~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~ 212 (405)
T 4b4t_J 179 IAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIR 212 (405)
T ss_dssp CCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceE
Confidence 3457789999999999999999999999988764
No 127
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=96.89 E-value=0.00093 Score=70.11 Aligned_cols=32 Identities=41% Similarity=0.542 Sum_probs=29.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|..|+|.|+||+||||+|+.||..++.+++.
T Consensus 49 ~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~ 80 (444)
T 1g41_A 49 TPKNILMIGPTGVGKTEIARRLAKLANAPFIK 80 (444)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEcCCCCCHHHHHHHHHHHcCCCcee
Confidence 46789999999999999999999999998764
No 128
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=96.89 E-value=0.0046 Score=58.22 Aligned_cols=87 Identities=16% Similarity=0.216 Sum_probs=49.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CC-CeEE----c----chhHHHHHhhCCCCCCCCCccccccccChHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NL-PNVL----Q----TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEF 227 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~-~~Vi----~----tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf 227 (473)
..+|+|.|++||||||++..|+..| |+ ..+. . ...+|+.+....... . .......+.+.-+
T Consensus 3 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~~v~~~rep~~t~~g~~ir~~l~~~~~~~---~----~~~~~~~e~lL~~ 75 (213)
T 4tmk_A 3 SKYIVIEGLEGAGKTTARNVVVETLEQLGIRDMVFTREPGGTQLAEKLRSLLLDIKSVG---D----EVITDKAEVLMFY 75 (213)
T ss_dssp CCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSCSSHHHHHHHHHHHSTTTTT---T----CCCCHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCcceeeeCCCCCHHHHHHHHHHhcccccc---c----ccCChHHHHHHHH
Confidence 4689999999999999999999988 55 3332 1 133455544211000 0 0011111122222
Q ss_pred HhcchhhHhHHHHHHHHHHhCCCcEEEEcc
Q 011994 228 VRECRIVRKGLAGDLKKAMKDGKPIIIEGI 257 (473)
Q Consensus 228 ~~q~~~V~egL~~~IekaL~eG~sVIIEGv 257 (473)
.... +-+...|..++.+|..||.|-.
T Consensus 76 A~R~----~~~~~~i~paL~~g~~VI~DRy 101 (213)
T 4tmk_A 76 AARV----QLVETVIKPALANGTWVIGDRH 101 (213)
T ss_dssp HHHH----HHHHHTHHHHHHTTCEEEEECC
T ss_pred HHHH----HHHHHHHHHHHHCCCEEEEcCc
Confidence 2211 2345567889999999998863
No 129
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=96.89 E-value=0.00075 Score=63.26 Aligned_cols=31 Identities=26% Similarity=0.482 Sum_probs=27.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.|.-|+|.|+||+||||+|+.|+..++.+++
T Consensus 44 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 74 (257)
T 1lv7_A 44 IPKGVLMVGPPGTGKTLLAKAIAGEAKVPFF 74 (257)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHcCCCEE
Confidence 4567999999999999999999999988765
No 130
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.89 E-value=0.00077 Score=71.31 Aligned_cols=34 Identities=26% Similarity=0.302 Sum_probs=30.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=||+.||||||||++|+.||..+|.+++.
T Consensus 240 i~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~ 273 (467)
T 4b4t_H 240 IDPPKGILLYGPPGTGKTLCARAVANRTDATFIR 273 (467)
T ss_dssp CCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEE
Confidence 3568899999999999999999999999988764
No 131
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=96.87 E-value=0.0019 Score=64.00 Aligned_cols=32 Identities=31% Similarity=0.427 Sum_probs=28.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+..|+|.|+||+|||++|+.||..++.+++.
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~~~~~~~ 81 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLLDVPFTM 81 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 45678999999999999999999999998763
No 132
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.84 E-value=0.0011 Score=69.49 Aligned_cols=34 Identities=18% Similarity=0.300 Sum_probs=30.3
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.|.=||+.||||||||++|+.+|..++.+++.
T Consensus 213 i~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~ 246 (437)
T 4b4t_I 213 IKPPKGVILYGAPGTGKTLLAKAVANQTSATFLR 246 (437)
T ss_dssp CCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEE
T ss_pred CCCCCCCceECCCCchHHHHHHHHHHHhCCCEEE
Confidence 4557889999999999999999999999988764
No 133
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=96.82 E-value=0.00078 Score=64.22 Aligned_cols=31 Identities=19% Similarity=0.218 Sum_probs=27.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+..|+|.|+||+||||+|+.|+..++.+++
T Consensus 53 ~~~~vll~Gp~GtGKT~la~~la~~~~~~~~ 83 (297)
T 3b9p_A 53 PAKGLLLFGPPGNGKTLLARAVATECSATFL 83 (297)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTCEEE
T ss_pred CCCeEEEECcCCCCHHHHHHHHHHHhCCCeE
Confidence 4678999999999999999999999987764
No 134
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.81 E-value=0.0014 Score=56.35 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+..++|.|++|+||||+++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 445678999999999999999999987
No 135
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.78 E-value=0.00091 Score=61.22 Aligned_cols=28 Identities=29% Similarity=0.389 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+.+|.|.|++||||||+++.|+..+.
T Consensus 20 ~~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 20 PGRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CSCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4567999999999999999999998875
No 136
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.77 E-value=0.0012 Score=59.59 Aligned_cols=27 Identities=19% Similarity=0.244 Sum_probs=24.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+..++|.|++|+||||+|+.++..++
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 456899999999999999999998774
No 137
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.74 E-value=0.0013 Score=58.32 Aligned_cols=30 Identities=43% Similarity=0.533 Sum_probs=25.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.+.|..++|.|++|+||||+++.++..++.
T Consensus 42 ~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~ 71 (250)
T 1njg_A 42 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 71 (250)
T ss_dssp TCCCSEEEEECSTTSCHHHHHHHHHHHHHC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 344568999999999999999999988854
No 138
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.73 E-value=0.0014 Score=56.62 Aligned_cols=27 Identities=30% Similarity=0.404 Sum_probs=23.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+..++|.|++|+||||+|+.++..+
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345578999999999999999999987
No 139
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.73 E-value=0.0023 Score=61.07 Aligned_cols=29 Identities=28% Similarity=0.391 Sum_probs=24.8
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+.+..|+|.|+||+|||++|+.+|..++
T Consensus 64 ~~~~~~vll~G~~GtGKT~la~~la~~l~ 92 (309)
T 3syl_A 64 ETPTLHMSFTGNPGTGKTTVALKMAGLLH 92 (309)
T ss_dssp SCCCCEEEEEECTTSSHHHHHHHHHHHHH
T ss_pred CCCCceEEEECCCCCCHHHHHHHHHHHHH
Confidence 34456799999999999999999998883
No 140
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=96.70 E-value=0.0097 Score=54.94 Aligned_cols=81 Identities=21% Similarity=0.292 Sum_probs=48.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc----c----hhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVLQ----T----DMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVR 229 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~----t----D~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~ 229 (473)
+.|.|-|.-||||||.+..|++.| |++++.. + ..+++.+.... .++.....-|..
T Consensus 1 mfI~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~treP~~t~~~~~ir~~l~~~~--------------~~~~~~~ll~~a 66 (197)
T 3hjn_A 1 MFITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKREPGGTETGEKIRKILLEEE--------------VTPKAELFLFLA 66 (197)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCSSHHHHHHHHHHHHSC--------------CCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEECCCCCcHHHHHHHHhhccc--------------CChHHHHHHHHH
Confidence 468899999999999999999988 6776541 1 23333322211 011111112221
Q ss_pred cchhhHhHHHHHHHHHHhCCCcEEEEcccC
Q 011994 230 ECRIVRKGLAGDLKKAMKDGKPIIIEGIHL 259 (473)
Q Consensus 230 q~~~V~egL~~~IekaL~eG~sVIIEGvhL 259 (473)
. + ..+...+..++.+|..||.|-...
T Consensus 67 ~-r---~~~~~~I~~~L~~g~~Vi~DRy~~ 92 (197)
T 3hjn_A 67 S-R---NLLVTEIKQYLSEGYAVLLDRYTD 92 (197)
T ss_dssp H-H---HHHHHHHHHHHTTTCEEEEESCHH
T ss_pred H-H---HHHHHHHHHHHHCCCeEEecccch
Confidence 1 1 123345778999999999887443
No 141
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.67 E-value=0.0011 Score=64.98 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=28.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|.-|||.|+||+|||++|+.+|..++.+++.
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~~~~~~~~ 81 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS 81 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHHHTCEEEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHCCCEEE
Confidence 35689999999999999999999999987653
No 142
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=96.65 E-value=0.0013 Score=61.88 Aligned_cols=30 Identities=30% Similarity=0.439 Sum_probs=26.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.+|.|.|++||||||+++.|+..+|..
T Consensus 23 ~~g~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 23 MRPFLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp CCSEEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 456799999999999999999999988854
No 143
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=96.65 E-value=0.0012 Score=61.54 Aligned_cols=27 Identities=30% Similarity=0.374 Sum_probs=25.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+|++|+|.|.+||||||+++.|+++++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 478999999999999999999999994
No 144
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=96.64 E-value=0.0014 Score=69.89 Aligned_cols=29 Identities=10% Similarity=0.190 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
+.+++|+|+|.+||||||+|+.||++|+.
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 45689999999999999999999999986
No 145
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=96.64 E-value=0.0015 Score=65.61 Aligned_cols=29 Identities=38% Similarity=0.590 Sum_probs=26.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+.|.+|.|.|++||||||+++.|+..++
T Consensus 89 ~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 89 PKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 45789999999999999999999998775
No 146
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=96.61 E-value=0.00062 Score=64.54 Aligned_cols=31 Identities=26% Similarity=0.173 Sum_probs=26.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc-CCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL-NLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~ 188 (473)
.++++|+|.|++||||||+++.|++.| ++.+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l~~~~~ 53 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLCEDWEV 53 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGCTTEEE
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 467899999999999999999999999 5443
No 147
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=96.61 E-value=0.0031 Score=60.99 Aligned_cols=30 Identities=27% Similarity=0.438 Sum_probs=26.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
|.-++|.|+|||||||+++.||..++...+
T Consensus 44 ~~GvlL~Gp~GtGKTtLakala~~~~~~~i 73 (274)
T 2x8a_A 44 PAGVLLAGPPGCGKTLLAKAVANESGLNFI 73 (274)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHcCCCEE
Confidence 344999999999999999999999987654
No 148
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.60 E-value=0.0018 Score=59.10 Aligned_cols=40 Identities=30% Similarity=0.341 Sum_probs=30.6
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchhHH
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDMVY 196 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ir 196 (473)
...+.+|.|+|++||||||++..|+..+ |...++ ..|.+.
T Consensus 19 ~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~ 62 (201)
T 1rz3_A 19 TAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHI 62 (201)
T ss_dssp CSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGC
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCccc
Confidence 3457899999999999999999999876 555433 445543
No 149
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.58 E-value=0.0015 Score=58.49 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=23.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+|.|.|++||||||+++.|+..+.
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 46899999999999999999998764
No 150
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=96.57 E-value=0.00056 Score=61.66 Aligned_cols=25 Identities=24% Similarity=0.456 Sum_probs=23.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
++|+|.|++||||||++..|+..++
T Consensus 1 ~~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 1 MLIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp CEEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3789999999999999999999885
No 151
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=96.57 E-value=0.011 Score=55.01 Aligned_cols=82 Identities=18% Similarity=0.297 Sum_probs=48.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc--CCCeEEc--------chhHHHHHhhCCCCCCCCCccccccccChHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL--NLPNVLQ--------TDMVYELLRTSTDAPLSSSPVWARNFSSSEELVTEFVRE 230 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L--g~~~Vi~--------tD~ir~~Lr~~~s~pL~~~~~W~~~y~s~EelI~gf~~q 230 (473)
.-|.|-|..||||||++..|+++| |+.++.. .+.+|+.+.... ++ . +.....-|...
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~eP~~t~~g~~ir~~l~~~~--~~------~-----~~~~~lLf~a~ 69 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMTREPGGVPTGEEIRKIVLEGN--DM------D-----IRTEAMLFAAS 69 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEEESSTTCHHHHHHHHHHHSSC--CC------C-----HHHHHHHHHHH
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEeeCCCCChHHHHHHHHHhccc--CC------C-----HHHHHHHHHHH
Confidence 468899999999999999999998 5665531 234454443211 11 0 01111112110
Q ss_pred chhhHhHHHHHHHHHHhCCCcEEEEccc
Q 011994 231 CRIVRKGLAGDLKKAMKDGKPIIIEGIH 258 (473)
Q Consensus 231 ~~~V~egL~~~IekaL~eG~sVIIEGvh 258 (473)
+ .+-+...+..++..|..||.|...
T Consensus 70 -R--~~~~~~~i~p~l~~g~~Vi~DRy~ 94 (205)
T 4hlc_A 70 -R--REHLVLKVIPALKEGKVVLCDRYI 94 (205)
T ss_dssp -H--HHHHHHTHHHHHHTTCEEEEECCH
T ss_pred -H--HHHHHHHHHHHHHcCCEEEecCcc
Confidence 1 112445677889999999988643
No 152
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=96.56 E-value=0.0016 Score=63.03 Aligned_cols=34 Identities=26% Similarity=0.454 Sum_probs=29.1
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+.|.+++++|+||+|||++|+.|+..++..++
T Consensus 44 ~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~ 77 (324)
T 3u61_B 44 KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77 (324)
T ss_dssp TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEE
T ss_pred cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEE
Confidence 3455778999999999999999999999986654
No 153
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=96.54 E-value=0.0014 Score=64.37 Aligned_cols=30 Identities=30% Similarity=0.440 Sum_probs=26.8
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
...+|.+|.|+|++||||||+++.|+..++
T Consensus 27 ~~~~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 27 GNKCPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp TCCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 346789999999999999999999998875
No 154
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.54 E-value=0.0016 Score=58.41 Aligned_cols=26 Identities=19% Similarity=0.331 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+|+|+|++||||||+++.|+..+.
T Consensus 5 g~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 5 RKTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998763
No 155
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=96.54 E-value=0.0053 Score=58.17 Aligned_cols=29 Identities=28% Similarity=0.295 Sum_probs=26.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+.++|+|.|++||||||++..|++.|+..
T Consensus 4 ~g~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 4 RGKLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CCCEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 46799999999999999999999999864
No 156
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=96.53 E-value=0.0017 Score=64.67 Aligned_cols=32 Identities=31% Similarity=0.493 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+..|+|.|+||+|||++|+.||..++.+++.
T Consensus 71 ~~~~ill~Gp~GtGKT~la~~la~~l~~~~~~ 102 (376)
T 1um8_A 71 SKSNILLIGPTGSGKTLMAQTLAKHLDIPIAI 102 (376)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 34578999999999999999999999988763
No 157
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.50 E-value=0.0029 Score=61.78 Aligned_cols=29 Identities=17% Similarity=0.292 Sum_probs=25.6
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
....|..++|.|++|+||||+++.++..+
T Consensus 41 ~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 41 KNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp TTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34567799999999999999999999987
No 158
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.50 E-value=0.0013 Score=59.11 Aligned_cols=26 Identities=27% Similarity=0.385 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
|.++.|.|++||||||+++.|+..+.
T Consensus 1 ~~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 1 SRPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35789999999999999999997663
No 159
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.49 E-value=0.0018 Score=62.80 Aligned_cols=33 Identities=24% Similarity=0.256 Sum_probs=28.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..+..|+|.|++|+|||++|+.++..++.+++.
T Consensus 53 ~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~ 85 (338)
T 3pfi_A 53 ECLDHILFSGPAGLGKTTLANIISYEMSANIKT 85 (338)
T ss_dssp SCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEE
Confidence 345578999999999999999999999988653
No 160
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=96.49 E-value=0.00065 Score=63.82 Aligned_cols=31 Identities=26% Similarity=0.477 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.|.-|+|.|+||+|||++|+.|+..++.+++
T Consensus 43 ~~~~vll~G~~GtGKT~la~~la~~~~~~~~ 73 (268)
T 2r62_A 43 IPKGVLLVGPPGTGKTLLAKAVAGEAHVPFF 73 (268)
T ss_dssp CCSCCCCBCSSCSSHHHHHHHHHHHHTCCCC
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEE
Confidence 3455899999999999999999999987754
No 161
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=64.58 Aligned_cols=32 Identities=25% Similarity=0.280 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..|..|+|.|+||+|||++|+.||..++.+++
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~~~~~~ 146 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQSGATFF 146 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHcCCeEE
Confidence 45678999999999999999999999998765
No 162
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.48 E-value=0.0018 Score=63.94 Aligned_cols=31 Identities=29% Similarity=0.207 Sum_probs=26.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~V 189 (473)
.|.-|+|.|+||+|||++|+.+|..+ +.+++
T Consensus 44 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 75 (322)
T 1xwi_A 44 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 75 (322)
T ss_dssp CCSEEEEESSSSSCHHHHHHHHHHHTTSCEEE
T ss_pred CCceEEEECCCCccHHHHHHHHHHHcCCCcEE
Confidence 45789999999999999999999998 55543
No 163
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.46 E-value=0.0017 Score=61.89 Aligned_cols=35 Identities=37% Similarity=0.464 Sum_probs=29.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
...|+|+|++|+||||+|..|+++.+ .++++|.+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~--~iIsdDs~~ 68 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH--RLIADDRVD 68 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC--EEEESSEEE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC--eEEecchhh
Confidence 46799999999999999999998876 566777543
No 164
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.45 E-value=0.0027 Score=55.86 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|++|+|||+++..++..+
T Consensus 40 ~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 40 HLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999876
No 165
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.43 E-value=0.0021 Score=61.07 Aligned_cols=38 Identities=21% Similarity=0.149 Sum_probs=30.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELL 199 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~L 199 (473)
..|-++|..||||||+++.|+. +|++++.++...++.+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~ 47 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRIT 47 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHh
Confidence 4789999999999999999987 9999864444445544
No 166
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=96.40 E-value=0.0039 Score=61.11 Aligned_cols=28 Identities=43% Similarity=0.679 Sum_probs=25.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
..+.+|.|.|++||||||+++.|+..++
T Consensus 78 ~~g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 78 RIPYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5678999999999999999999998776
No 167
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.40 E-value=0.0017 Score=64.94 Aligned_cols=32 Identities=28% Similarity=0.236 Sum_probs=27.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+.-|||.|+||+|||++|+.||..++.+++.
T Consensus 83 ~~~~iLL~GppGtGKT~la~ala~~~~~~~~~ 114 (355)
T 2qp9_X 83 PTSGILLYGPPGTGKSYLAKAVATEANSTFFS 114 (355)
T ss_dssp CCCCEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 34578999999999999999999999987653
No 168
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.38 E-value=0.0017 Score=57.58 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=22.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...++|.|++|+||||++..++..+
T Consensus 38 g~~~~l~G~~G~GKTtL~~~i~~~~ 62 (180)
T 3ec2_A 38 GKGLTFVGSPGVGKTHLAVATLKAI 62 (180)
T ss_dssp CCEEEECCSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999998876
No 169
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=96.37 E-value=0.0022 Score=63.34 Aligned_cols=30 Identities=30% Similarity=0.375 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
.|..++|.|+||+||||+++.||..+|...
T Consensus 50 ~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 50 VLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp CCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 456789999999999999999999998764
No 170
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=96.34 E-value=0.0031 Score=58.91 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
|.-++|.|+|||||||+++.|+..++...+.
T Consensus 49 ~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~ 79 (254)
T 1ixz_A 49 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 79 (254)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 4459999999999999999999998876553
No 171
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.31 E-value=0.005 Score=63.48 Aligned_cols=31 Identities=29% Similarity=0.489 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC--CCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN--LPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg--~~~V 189 (473)
.|.-+||.|+||+|||++|+.||..+| ++++
T Consensus 62 ~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~ 94 (456)
T 2c9o_A 62 AGRAVLLAGPPGTGKTALALAIAQELGSKVPFC 94 (456)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEE
T ss_pred CCCeEEEECCCcCCHHHHHHHHHHHhCCCceEE
Confidence 457899999999999999999999998 6654
No 172
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.31 E-value=0.0072 Score=52.28 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-|+|.|++|+|||++|+.|+...
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 457999999999999999999876
No 173
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=96.30 E-value=0.0026 Score=61.43 Aligned_cols=40 Identities=18% Similarity=0.200 Sum_probs=34.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVYELLR 200 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir~~Lr 200 (473)
++|.|+|.+||||||+|..|+.++|++++..+|.+++.+.
T Consensus 2 ~~i~ltG~~~sGK~tv~~~l~~~~g~~~~~~~~~~~~~~~ 41 (241)
T 1dek_A 2 KLIFLSGVKRSGKDTTADFIMSNYSAVKYQLAGPIKDALA 41 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSCEEECCTTHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeEEecChHHHHHHH
Confidence 5899999999999999999999899997766788776543
No 174
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=96.28 E-value=0.0043 Score=60.61 Aligned_cols=27 Identities=33% Similarity=0.470 Sum_probs=24.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
+..++|.|+||+|||++|+.++..++.
T Consensus 70 ~~~vLl~GppGtGKT~la~~la~~l~~ 96 (368)
T 3uk6_A 70 GRAVLIAGQPGTGKTAIAMGMAQALGP 96 (368)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHHCS
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 368999999999999999999999974
No 175
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.27 E-value=0.0027 Score=63.70 Aligned_cols=31 Identities=23% Similarity=0.232 Sum_probs=28.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+..|||.|+||+|||++|+.+|.+++.+++
T Consensus 147 ~~~~vLL~GppGtGKT~la~aia~~~~~~~~ 177 (389)
T 3vfd_A 147 PARGLLLFGPPGNGKTMLAKAVAAESNATFF 177 (389)
T ss_dssp CCSEEEEESSTTSCHHHHHHHHHHHTTCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhhcCcEE
Confidence 3568999999999999999999999998765
No 176
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=96.26 E-value=0.0032 Score=63.16 Aligned_cols=37 Identities=5% Similarity=0.022 Sum_probs=30.8
Q ss_pred HHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 148 YRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 148 Y~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
|.++........|..++|.|+||+|||++++.++..+
T Consensus 33 ~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 33 FLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4444555556788899999999999999999999988
No 177
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=96.24 E-value=0.0026 Score=57.13 Aligned_cols=25 Identities=24% Similarity=0.327 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
|..++|.|++|+||||+|..|+..+
T Consensus 54 ~~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 54 MKGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999999999877
No 178
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=96.22 E-value=0.0055 Score=58.29 Aligned_cols=27 Identities=37% Similarity=0.575 Sum_probs=23.9
Q ss_pred CCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+|. .++|.|+||+||||+|+.|+..+
T Consensus 44 ~~~~~~~ll~G~~GtGKt~la~~la~~~ 71 (311)
T 4fcw_A 44 NRPIGSFLFLGPTGVGKTELAKTLAATL 71 (311)
T ss_dssp TSCSEEEEEESCSSSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCcCHHHHHHHHHHHH
Confidence 3444 79999999999999999999987
No 179
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=96.22 E-value=0.01 Score=56.44 Aligned_cols=31 Identities=29% Similarity=0.497 Sum_probs=26.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
|.-++|.|+|||||||+++.|+..++...+.
T Consensus 73 ~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~ 103 (278)
T 1iy2_A 73 PKGVLLVGPPGVGKTHLARAVAGEARVPFIT 103 (278)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEECCCcChHHHHHHHHHHHcCCCEEE
Confidence 3448999999999999999999998866553
No 180
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.16 E-value=0.0032 Score=66.08 Aligned_cols=32 Identities=28% Similarity=0.310 Sum_probs=28.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.+..++|+|+||+||||+|+.||..+|+.++.
T Consensus 76 ~~~~lLL~GppGtGKTtla~~la~~l~~~~i~ 107 (516)
T 1sxj_A 76 VFRAAMLYGPPGIGKTTAAHLVAQELGYDILE 107 (516)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHcCCCEEE
Confidence 34689999999999999999999999987653
No 181
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.15 E-value=0.0052 Score=59.56 Aligned_cols=31 Identities=13% Similarity=0.224 Sum_probs=26.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V 189 (473)
.+..++|.|+||+||||+++.++..+ +.+++
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~ 69 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVI 69 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEE
Confidence 34568999999999999999999988 66543
No 182
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=96.14 E-value=0.012 Score=58.08 Aligned_cols=57 Identities=23% Similarity=0.477 Sum_probs=40.2
Q ss_pred HHHHHHHHHhcCCChhhHHHHHHHHHhhccC--CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 128 EANLFKLMERRGYGEEYISRYRMMTRFHHQR--VPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 128 e~~v~~lL~~~~yge~~a~rY~l~~~~~~~~--~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
...|..+|.-++|...+...| +..+...+ +...|+|.||||+|||++|..||..+++
T Consensus 72 ~n~i~~~l~~qg~~~~~~~~~--l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 72 SNRIYKILELNGYDPQYAASV--FLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp GCHHHHHHHHTTCCHHHHHHH--HHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred hHHHHHHHHHcCCCHHHHHHH--HHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 456777777778876543332 34444433 2347999999999999999999997654
No 183
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.07 E-value=0.0031 Score=57.41 Aligned_cols=27 Identities=30% Similarity=0.589 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+.+.|.|++||||||+.+.|+..+++.
T Consensus 1 ~~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 1 MKIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 368999999999999999999988744
No 184
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=96.05 E-value=0.0029 Score=61.33 Aligned_cols=28 Identities=29% Similarity=0.427 Sum_probs=25.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...+..++|.|++|+||||+++.++..+
T Consensus 41 ~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 41 GEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp SCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999987
No 185
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=96.02 E-value=0.0028 Score=60.69 Aligned_cols=31 Identities=26% Similarity=0.324 Sum_probs=27.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+..++|.|++|+||||+|+.++..++.+++
T Consensus 37 ~~~~vll~G~~GtGKT~la~~i~~~~~~~~~ 67 (324)
T 1hqc_A 37 PLEHLLLFGPPGLGKTTLAHVIAHELGVNLR 67 (324)
T ss_dssp CCCCCEEECCTTCCCHHHHHHHHHHHTCCEE
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567899999999999999999999988765
No 186
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=96.00 E-value=0.0036 Score=70.13 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=29.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|.-||+.|+||||||++|+.+|..+|.+++.
T Consensus 236 ~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~ 268 (806)
T 3cf2_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEE
Confidence 468899999999999999999999999988664
No 187
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=96.00 E-value=0.0052 Score=59.73 Aligned_cols=30 Identities=43% Similarity=0.533 Sum_probs=26.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.+.|..++|.|++|+||||+|+.++..++.
T Consensus 35 ~~~~~~~ll~G~~G~GKT~la~~la~~l~~ 64 (373)
T 1jr3_A 35 GRIHHAYLFSGTRGVGKTSIARLLAKGLNC 64 (373)
T ss_dssp TCCCSEEEEESCTTSSHHHHHHHHHHHHSC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 345668999999999999999999998864
No 188
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=95.98 E-value=0.0044 Score=63.96 Aligned_cols=31 Identities=29% Similarity=0.207 Sum_probs=26.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc-CCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL-NLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L-g~~~V 189 (473)
.|.-|||.|+||+|||++|+.||..+ +.+++
T Consensus 166 ~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~ 197 (444)
T 2zan_A 166 PWRGILLFGPPGTGKSYLAKAVATEANNSTFF 197 (444)
T ss_dssp CCSEEEEECSTTSSHHHHHHHHHHHCCSSEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHcCCCCEE
Confidence 45789999999999999999999999 65543
No 189
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=95.98 E-value=0.0048 Score=53.42 Aligned_cols=28 Identities=21% Similarity=0.196 Sum_probs=23.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.-|+|.|++|+|||++|+.++...+ +++
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~-~~~ 55 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT-PWV 55 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS-CEE
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC-CeE
Confidence 3478999999999999999988776 443
No 190
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=95.98 E-value=0.0051 Score=63.97 Aligned_cols=32 Identities=22% Similarity=0.229 Sum_probs=27.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+..++|.|+||+||||+|+.|+..++..++
T Consensus 48 ~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~ 79 (447)
T 3pvs_A 48 GHLHSMILWGPPGTGKTTLAEVIARYANADVE 79 (447)
T ss_dssp TCCCEEEEECSTTSSHHHHHHHHHHHTTCEEE
T ss_pred CCCcEEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 34457899999999999999999999987754
No 191
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=95.97 E-value=0.007 Score=57.38 Aligned_cols=41 Identities=24% Similarity=0.279 Sum_probs=34.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC---CCeEEcchhHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN---LPNVLQTDMVYELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg---~~~Vi~tD~ir~~L 199 (473)
.+++|+|+|.+||||+|+|..|..++| ++.|..+|.+++..
T Consensus 10 ~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK~~~ 53 (202)
T 3ch4_B 10 PRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLKEQY 53 (202)
T ss_dssp CSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHHHHH
T ss_pred CCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHHHHH
Confidence 457999999999999999999998885 55666789999643
No 192
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.95 E-value=0.0072 Score=63.66 Aligned_cols=34 Identities=29% Similarity=0.317 Sum_probs=29.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
...|.-|||.|+||+|||++|+.|+..++.+++.
T Consensus 235 ~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~ 268 (489)
T 3hu3_A 235 VKPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (489)
T ss_dssp CCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEE
T ss_pred CCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEE
Confidence 3456789999999999999999999999987653
No 193
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.95 E-value=0.004 Score=60.11 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=24.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...+..++|.|++|+||||+++.++..+
T Consensus 42 ~~~~~~vli~G~~G~GKTtl~~~l~~~~ 69 (386)
T 2qby_A 42 EEKPNNIFIYGLTGTGKTAVVKFVLSKL 69 (386)
T ss_dssp TCCCCCEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3456789999999999999999999987
No 194
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=95.93 E-value=0.0052 Score=64.81 Aligned_cols=33 Identities=33% Similarity=0.494 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+.|.-|+|.|+||+||||+|+.++..++.+++.
T Consensus 47 ~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~ 79 (476)
T 2ce7_A 47 RMPKGILLVGPPGTGKTLLARAVAGEANVPFFH 79 (476)
T ss_dssp CCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEE
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHcCCCeee
Confidence 456679999999999999999999999988763
No 195
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.91 E-value=0.0079 Score=58.93 Aligned_cols=27 Identities=26% Similarity=0.525 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.|. ++|.|++|+||||+++.|+..+.
T Consensus 45 ~~~~-~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 45 KLPH-LLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp CCCC-EEEECSSSSSHHHHHHHHHHHHH
T ss_pred CCce-EEEECCCCCCHHHHHHHHHHHHc
Confidence 3454 89999999999999999999863
No 196
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.87 E-value=0.0037 Score=57.10 Aligned_cols=26 Identities=31% Similarity=0.485 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+.++.|+|++|+||||+.+.|...+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 35789999999999999999987653
No 197
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=95.87 E-value=0.0041 Score=60.37 Aligned_cols=28 Identities=25% Similarity=0.300 Sum_probs=25.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.++|.|+||+|||++|+.|+..++.+++
T Consensus 48 ~vll~G~pGtGKT~la~~la~~~~~~~~ 75 (331)
T 2r44_A 48 HILLEGVPGLAKTLSVNTLAKTMDLDFH 75 (331)
T ss_dssp CEEEESCCCHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEECCCCCcHHHHHHHHHHHhCCCeE
Confidence 5799999999999999999999987754
No 198
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.83 E-value=0.0059 Score=57.32 Aligned_cols=27 Identities=22% Similarity=0.303 Sum_probs=23.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
++.+|+|.|++|+|||||+..|+..+.
T Consensus 18 ~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 18 GRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 356899999999999999999998765
No 199
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=95.82 E-value=0.011 Score=57.65 Aligned_cols=23 Identities=17% Similarity=0.170 Sum_probs=22.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|++|+||||+++.++..+
T Consensus 46 ~~li~G~~G~GKTtl~~~l~~~~ 68 (389)
T 1fnn_A 46 RATLLGRPGTGKTVTLRKLWELY 68 (389)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 89999999999999999999988
No 200
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=95.80 E-value=0.009 Score=63.41 Aligned_cols=32 Identities=25% Similarity=0.355 Sum_probs=27.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
..+.+++|.|+|||||||+|+.|+..++.+++
T Consensus 106 ~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~ 137 (543)
T 3m6a_A 106 LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFV 137 (543)
T ss_dssp CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeE
Confidence 35668999999999999999999999986654
No 201
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.79 E-value=0.0058 Score=60.67 Aligned_cols=28 Identities=46% Similarity=0.623 Sum_probs=25.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...+.+|.|.|++||||||+++.|+..+
T Consensus 87 ~~~g~ivgI~G~sGsGKSTL~~~L~gll 114 (312)
T 3aez_A 87 RPVPFIIGVAGSVAVGKSTTARVLQALL 114 (312)
T ss_dssp SCCCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCEEEEEECCCCchHHHHHHHHHhhc
Confidence 4567899999999999999999999866
No 202
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.74 E-value=0.0069 Score=55.97 Aligned_cols=25 Identities=20% Similarity=0.460 Sum_probs=16.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH-Hhc
Q 011994 160 PLVILVCGTACVGKSTIATQLA-QRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA-~~L 184 (473)
..+|.|.|++||||||+++.|+ ..+
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC---
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 4589999999999999999998 655
No 203
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.72 E-value=0.0066 Score=57.16 Aligned_cols=29 Identities=17% Similarity=0.210 Sum_probs=24.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.....++.|.|++|||||||.+.|+..+.
T Consensus 13 ~~~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 13 MAQGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp --CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCCCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 34456999999999999999999988764
No 204
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.70 E-value=0.0079 Score=57.99 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=21.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++|.|+||+||||+|+.|+..++
T Consensus 60 ~~ll~G~~G~GKT~la~~la~~l~ 83 (353)
T 1sxj_D 60 HMLFYGPPGTGKTSTILALTKELY 83 (353)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 389999999999999999998864
No 205
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=95.63 E-value=0.0057 Score=56.71 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.|+|+||+|+|||||+..|...+.
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~ 26 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCC
Confidence 378999999999999999988763
No 206
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.61 E-value=0.007 Score=55.54 Aligned_cols=25 Identities=24% Similarity=0.198 Sum_probs=22.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+|.|+|++||||||++..|+..|
T Consensus 4 ~~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 4 MNVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhh
Confidence 4589999999999999999999876
No 207
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.59 E-value=0.0075 Score=55.02 Aligned_cols=26 Identities=35% Similarity=0.576 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.-++.|.|++||||||+.+.|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 35899999999999999999998764
No 208
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=95.59 E-value=0.011 Score=58.18 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=28.8
Q ss_pred hhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 154 FHHQRVPLVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 154 ~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+...+.|..++|.|++|+||||+|..+|+.+...
T Consensus 18 i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~ 51 (334)
T 1a5t_A 18 YQAGRGHHALLIQALPGMGDDALIYALSRYLLCQ 51 (334)
T ss_dssp HHTTCCCSEEEEECCTTSCHHHHHHHHHHHHTCS
T ss_pred HHcCCcceeEEEECCCCchHHHHHHHHHHHHhCC
Confidence 3345567889999999999999999999998754
No 209
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=95.58 E-value=0.0063 Score=65.30 Aligned_cols=41 Identities=34% Similarity=0.404 Sum_probs=33.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC----CCe-EEcchhHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN----LPN-VLQTDMVYELL 199 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg----~~~-Vi~tD~ir~~L 199 (473)
+..+|+|+|++||||||+++.|+..++ ... ++.+|.+++.+
T Consensus 368 ~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l 413 (552)
T 3cr8_A 368 QGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHL 413 (552)
T ss_dssp SCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHT
T ss_pred cceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhh
Confidence 467999999999999999999999985 223 35778887654
No 210
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.58 E-value=0.01 Score=56.20 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.|. ++|.|++|+||||+|..++..+
T Consensus 41 ~~~~-~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 41 NMPH-MIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CCCC-EEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCe-EEEECcCCCCHHHHHHHHHHHh
Confidence 3455 9999999999999999999886
No 211
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=95.55 E-value=0.011 Score=56.22 Aligned_cols=24 Identities=42% Similarity=0.513 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++|.|++|+||||+|+.++..++
T Consensus 48 ~~ll~G~~G~GKT~la~~l~~~l~ 71 (327)
T 1iqp_A 48 HLLFAGPPGVGKTTAALALARELF 71 (327)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHHH
T ss_pred eEEEECcCCCCHHHHHHHHHHHhc
Confidence 489999999999999999999863
No 212
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.48 E-value=0.0077 Score=55.91 Aligned_cols=25 Identities=28% Similarity=0.616 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..++.|.|++||||||+++.|+..+
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4578999999999999999999866
No 213
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=95.47 E-value=0.0089 Score=57.71 Aligned_cols=25 Identities=40% Similarity=0.376 Sum_probs=22.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.|+|.|+||+|||++|+.|+..++-
T Consensus 47 ~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 47 GVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred eEEEECCCCccHHHHHHHHHHhCcc
Confidence 3899999999999999999998863
No 214
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.45 E-value=0.0067 Score=58.93 Aligned_cols=26 Identities=27% Similarity=0.469 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.|. ++|.|++|+||||+++.|+..+
T Consensus 35 ~~~~-~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 35 DLPH-LLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CCCC-EEEECSTTSSHHHHHHTHHHHH
T ss_pred CCCe-EEEECCCCCCHHHHHHHHHHHH
Confidence 3466 9999999999999999999965
No 215
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.44 E-value=0.0076 Score=54.40 Aligned_cols=25 Identities=28% Similarity=0.312 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--++.|.|+|||||||++..|+..+
T Consensus 25 G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 25 QAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998743
No 216
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.43 E-value=0.0082 Score=54.90 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA 181 (473)
.-++.|.|++||||||+++.|+
T Consensus 30 G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 30 GTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHH
Confidence 3589999999999999999988
No 217
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.42 E-value=0.0066 Score=56.95 Aligned_cols=34 Identities=24% Similarity=0.363 Sum_probs=27.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
.-|+|.|+||+||||+|..|.. .|... +++|.+.
T Consensus 17 ~gvli~G~SGaGKStlal~L~~-rG~~l-vaDD~v~ 50 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALID-RGHQL-VCDDVID 50 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHH-TTCEE-EESSEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCeE-ecCCEEE
Confidence 4689999999999999999987 47764 5777654
No 218
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=95.42 E-value=0.0068 Score=62.10 Aligned_cols=31 Identities=32% Similarity=0.456 Sum_probs=26.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
+....|+|.|++|+||||+++.||..+++++
T Consensus 22 g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f 52 (359)
T 2ga8_A 22 NYRVCVILVGSPGSGKSTIAEELCQIINEKY 52 (359)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHHHhCCCe
Confidence 3345789999999999999999999998765
No 219
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.42 E-value=0.0087 Score=56.59 Aligned_cols=25 Identities=36% Similarity=0.604 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|. ++|.|++|+||||+|+.++..+
T Consensus 38 ~~~-~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 38 IPH-LLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CCC-EEEESSSSSSHHHHHHHHHHHH
T ss_pred CCe-EEEECcCCcCHHHHHHHHHHHh
Confidence 344 8999999999999999999987
No 220
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.41 E-value=0.0089 Score=53.70 Aligned_cols=25 Identities=16% Similarity=0.287 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+++|.|+||+||||++..|+..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~l~~~~ 47 (235)
T 2w0m_A 23 GFFIALTGEPGTGKTIFSLHFIAKG 47 (235)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998654
No 221
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=95.38 E-value=0.008 Score=53.04 Aligned_cols=25 Identities=24% Similarity=0.275 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...++|.|++|+||||+++.++..+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3478999999999999999999877
No 222
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=95.33 E-value=0.018 Score=59.46 Aligned_cols=25 Identities=12% Similarity=0.291 Sum_probs=23.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..++|.|++|+||||+|+.++..+
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l 154 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYV 154 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5678999999999999999999987
No 223
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=95.30 E-value=0.029 Score=53.75 Aligned_cols=27 Identities=22% Similarity=0.375 Sum_probs=24.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..|+|.||||+||||+|..|+..++-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 479999999999999999999988543
No 224
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=95.29 E-value=0.017 Score=52.07 Aligned_cols=27 Identities=15% Similarity=0.314 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+.+|+|.|.+|+||||+...|+..+.
T Consensus 29 ~~~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 29 GTVAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp TCEEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred CceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 456889999999999999999998763
No 225
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.28 E-value=0.057 Score=53.87 Aligned_cols=33 Identities=24% Similarity=0.199 Sum_probs=27.3
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCe
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL---NLPN 188 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~ 188 (473)
....+.+|.|+|.||+||||++..|+..+ |...
T Consensus 75 ~~~~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV 110 (355)
T 3p32_A 75 DSGNAHRVGITGVPGVGKSTAIEALGMHLIERGHRV 110 (355)
T ss_dssp GCCCSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCE
T ss_pred hcCCceEEEEECCCCCCHHHHHHHHHHHHHhCCCce
Confidence 34567899999999999999999999876 5543
No 226
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=95.27 E-value=0.012 Score=60.34 Aligned_cols=33 Identities=21% Similarity=0.102 Sum_probs=27.9
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
-..+.+|+|.|+||+||||+++.|+..++...+
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~ 198 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKAL 198 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEE
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEE
Confidence 345679999999999999999999998876544
No 227
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.25 E-value=0.0085 Score=55.67 Aligned_cols=26 Identities=38% Similarity=0.332 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
+|+|.|.+||||||+|..|+.. |.+.
T Consensus 1 ~ilV~Gg~~SGKS~~A~~la~~-~~~~ 26 (180)
T 1c9k_A 1 MILVTGGARSGKSRHAEALIGD-APQV 26 (180)
T ss_dssp CEEEEECTTSSHHHHHHHHHCS-CSSE
T ss_pred CEEEECCCCCcHHHHHHHHHhc-CCCe
Confidence 3799999999999999999987 7653
No 228
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=95.20 E-value=0.017 Score=59.94 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=23.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+..++|.|+||+|||++|+.||..+
T Consensus 199 ~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445567999999999999999999987
No 229
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=95.13 E-value=0.012 Score=52.72 Aligned_cols=27 Identities=26% Similarity=0.233 Sum_probs=23.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..+++|.|+||+||||++..|+...+.
T Consensus 20 G~~~~i~G~~GsGKTtl~~~l~~~~~~ 46 (220)
T 2cvh_A 20 GVLTQVYGPYASGKTTLALQTGLLSGK 46 (220)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHCS
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 458999999999999999999874443
No 230
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=95.12 E-value=0.014 Score=54.42 Aligned_cols=26 Identities=19% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+++++|+|+||+|||++|..++..
T Consensus 3 ~~~mi~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 3 AMAEICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp -CCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred cceeEEEEEeCCCCCHHHHHHHHHHH
Confidence 46789999999999999999886543
No 231
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=95.11 E-value=0.016 Score=52.55 Aligned_cols=27 Identities=19% Similarity=0.234 Sum_probs=23.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++..|+|+|.+|+||||+...|+..+
T Consensus 36 ~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 36 HGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp TTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 456788888999999999999999875
No 232
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=95.11 E-value=0.016 Score=61.44 Aligned_cols=32 Identities=28% Similarity=0.513 Sum_probs=27.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
.|.-|+|.|+||+||||+|+.|+..++.+++.
T Consensus 63 ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~ 94 (499)
T 2dhr_A 63 IPKGVLLVGPPGVGKTHLARAVAGEARVPFIT 94 (499)
T ss_dssp CCSEEEEECSSSSSHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCEEE
Confidence 35569999999999999999999999877653
No 233
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=95.06 E-value=0.012 Score=65.42 Aligned_cols=33 Identities=30% Similarity=0.342 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
..|..|+|+|+|||||||+|+.|+..++..++.
T Consensus 236 ~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~ 268 (806)
T 1ypw_A 236 KPPRGILLYGPPGTGKTLIARAVANETGAFFFL 268 (806)
T ss_dssp CCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEE
Confidence 456789999999999999999999999877553
No 234
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=95.04 E-value=0.033 Score=52.27 Aligned_cols=26 Identities=27% Similarity=0.317 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+..|+|.|++|+|||++|+.|+..++
T Consensus 29 ~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 29 DKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp CSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 34678999999999999999998874
No 235
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=94.94 E-value=0.011 Score=66.25 Aligned_cols=33 Identities=18% Similarity=0.215 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi 190 (473)
+.|.-||+.||||||||.+|+.+|..++.+++.
T Consensus 509 ~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~ 541 (806)
T 3cf2_A 509 TPSKGVLFYGPPGCGKTLLAKAIANECQANFIS 541 (806)
T ss_dssp CCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEE
T ss_pred CCCceEEEecCCCCCchHHHHHHHHHhCCceEE
Confidence 346679999999999999999999999998764
No 236
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.89 E-value=0.017 Score=52.79 Aligned_cols=25 Identities=20% Similarity=0.250 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+++|+|++|+||||+...|...+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhc
Confidence 3478999999999999999998764
No 237
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=94.89 E-value=0.016 Score=53.85 Aligned_cols=30 Identities=20% Similarity=0.313 Sum_probs=25.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhcCCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRLNLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~ 188 (473)
.++.+|.|.|++||||||+++.|+.. +...
T Consensus 18 ~~g~~i~i~G~~GsGKSTl~~~L~~~-~g~v 47 (230)
T 2vp4_A 18 TQPFTVLIEGNIGSGKTTYLNHFEKY-KNDI 47 (230)
T ss_dssp CCCEEEEEECSTTSCHHHHHHTTGGG-TTTE
T ss_pred CCceEEEEECCCCCCHHHHHHHHHhc-cCCe
Confidence 45689999999999999999999876 4443
No 238
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=94.88 E-value=0.017 Score=51.78 Aligned_cols=26 Identities=19% Similarity=0.408 Sum_probs=23.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..-++.|.|++|+||||+.+.|+..+
T Consensus 32 ~Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 32 KAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp SCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHhC
Confidence 34589999999999999999999877
No 239
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.88 E-value=0.015 Score=53.00 Aligned_cols=24 Identities=25% Similarity=0.266 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+++|.|+||+||||++..|+..
T Consensus 24 G~~~~i~G~~GsGKTtl~~~l~~~ 47 (243)
T 1n0w_A 24 GSITEMFGEFRTGKTQICHTLAVT 47 (243)
T ss_dssp TSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHHHH
Confidence 358999999999999999999984
No 240
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=94.82 E-value=0.013 Score=53.93 Aligned_cols=23 Identities=26% Similarity=0.485 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++.|.|++|+||||+.+.|+..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 58899999999999999999876
No 241
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=94.81 E-value=0.02 Score=53.15 Aligned_cols=31 Identities=26% Similarity=0.465 Sum_probs=26.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc--CCCe
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL--NLPN 188 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L--g~~~ 188 (473)
.++.++++.|.+|+||||++..|+..+ |...
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v 44 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKV 44 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCE
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeE
Confidence 457899999999999999999999766 5544
No 242
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.81 E-value=0.015 Score=52.95 Aligned_cols=25 Identities=24% Similarity=0.292 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+++|.|+||+||||++..++..+
T Consensus 23 G~~~~i~G~~GsGKTtl~~~~~~~~ 47 (247)
T 2dr3_A 23 RNVVLLSGGPGTGKTIFSQQFLWNG 47 (247)
T ss_dssp TCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3589999999999999998887643
No 243
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.78 E-value=0.042 Score=59.78 Aligned_cols=31 Identities=29% Similarity=0.539 Sum_probs=27.0
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPL-VILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~-iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
+|. .++|.|+||+|||++|+.|+..++.+++
T Consensus 486 ~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~ 517 (758)
T 1r6b_X 486 KPVGSFLFAGPTGVGKTEVTVQLSKALGIELL 517 (758)
T ss_dssp SCSEEEEEECSTTSSHHHHHHHHHHHHTCEEE
T ss_pred CCceEEEEECCCCCcHHHHHHHHHHHhcCCEE
Confidence 454 7999999999999999999999986654
No 244
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=94.61 E-value=0.02 Score=52.12 Aligned_cols=24 Identities=17% Similarity=0.254 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+++++|++|+||||++..++.++
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~ 27 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIY 27 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 589999999999999998888765
No 245
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=94.60 E-value=0.019 Score=55.34 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|++||||||+.+.|+..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3589999999999999999998765
No 246
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=94.58 E-value=0.039 Score=54.18 Aligned_cols=27 Identities=22% Similarity=0.368 Sum_probs=23.7
Q ss_pred CCCeEEEE--EcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILV--CGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI--~G~~GsGKSTlA~~LA~~L 184 (473)
..+..++| .|++|+||||+++.++..+
T Consensus 48 ~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 48 LSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp BCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 35678888 9999999999999999876
No 247
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.55 E-value=0.033 Score=60.89 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=24.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+..++|.|+||+|||++|+.||..+
T Consensus 199 ~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 199 RTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp SSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred CCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 445578999999999999999999997
No 248
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.54 E-value=0.023 Score=50.07 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=23.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
|-+.+|+|++||||||+...|..-++.
T Consensus 26 ~g~~~i~G~NGsGKStll~ai~~~l~~ 52 (182)
T 3kta_A 26 KGFTAIVGANGSGKSNIGDAILFVLGG 52 (182)
T ss_dssp SSEEEEEECTTSSHHHHHHHHHHHTTC
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHHcC
Confidence 448899999999999999999887753
No 249
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=94.54 E-value=0.054 Score=57.40 Aligned_cols=25 Identities=24% Similarity=0.333 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.|+|.|+||+|||++|+.||..++.
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~~ 67 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQN 67 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBSS
T ss_pred eeEeecCchHHHHHHHHHHHHHHhh
Confidence 6899999999999999999998853
No 250
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=94.50 E-value=0.021 Score=56.13 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+..++|.|++|+|||++|..|+..+.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~ 177 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELS 177 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHH
Confidence 45789999999999999999998553
No 251
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.41 E-value=0.021 Score=54.72 Aligned_cols=25 Identities=36% Similarity=0.359 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|+||+||||++..|+..+
T Consensus 35 G~~~~i~G~~G~GKTTl~~~ia~~~ 59 (296)
T 1cr0_A 35 GEVIMVTSGSGMGKSTFVRQQALQW 59 (296)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998765
No 252
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.33 E-value=0.02 Score=54.27 Aligned_cols=24 Identities=21% Similarity=0.202 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~ 55 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLD 55 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999997644
No 253
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.33 E-value=0.025 Score=48.82 Aligned_cols=24 Identities=38% Similarity=0.457 Sum_probs=21.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA 181 (473)
+++..|++.|.+|+|||||...|.
T Consensus 16 ~~~~~i~v~G~~~~GKssli~~l~ 39 (183)
T 1moz_A 16 NKELRILILGLDGAGKTTILYRLQ 39 (183)
T ss_dssp SSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCccEEEEECCCCCCHHHHHHHHh
Confidence 567899999999999999998775
No 254
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=94.27 E-value=0.044 Score=59.86 Aligned_cols=27 Identities=30% Similarity=0.592 Sum_probs=24.0
Q ss_pred CCCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+|. .++|.|+||+|||++|+.|+..+
T Consensus 518 ~~p~~~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 518 KRPIGSFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp TSCSEEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3455 79999999999999999999987
No 255
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=94.27 E-value=0.029 Score=47.32 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|++.|.+|+||||+...|...
T Consensus 4 ~~~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 4 VAIKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEEECcCCCCHHHHHHHHHcC
Confidence 3567999999999999999999753
No 256
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=94.19 E-value=0.028 Score=46.96 Aligned_cols=23 Identities=39% Similarity=0.576 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|++.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 4 YKLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46899999999999999999764
No 257
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=94.18 E-value=0.031 Score=46.82 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|.|.+|+||||+...|...
T Consensus 3 ~~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 3 EYKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999998754
No 258
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=94.18 E-value=0.025 Score=53.90 Aligned_cols=24 Identities=33% Similarity=0.360 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+++|.|+||+||||++..|+..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 589999999999999999998643
No 259
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.15 E-value=0.021 Score=53.63 Aligned_cols=24 Identities=25% Similarity=0.205 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 31 e~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 31 EFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp CEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 488999999999999999997544
No 260
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=94.07 E-value=0.043 Score=46.54 Aligned_cols=25 Identities=32% Similarity=0.392 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+++..|++.|.+|+|||||...|..
T Consensus 5 ~~~~~i~v~G~~~~GKssl~~~l~~ 29 (171)
T 1upt_A 5 TREMRILILGLDGAGKTTILYRLQV 29 (171)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999964
No 261
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.06 E-value=0.016 Score=52.80 Aligned_cols=24 Identities=33% Similarity=0.559 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++.|+|++||||||++..|+..+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 378899999999999999998776
No 262
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=94.03 E-value=0.014 Score=65.03 Aligned_cols=31 Identities=19% Similarity=0.253 Sum_probs=27.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCCCeE
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNLPNV 189 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~~~V 189 (473)
.+..++|.|+||+||||+|+.||..++..++
T Consensus 510 ~~~~vLL~GppGtGKT~Lakala~~~~~~~i 540 (806)
T 1ypw_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFI 540 (806)
T ss_dssp CCCCCCCBCCTTSSHHHHHHHHHHHHTCCCC
T ss_pred CCceeEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 4567999999999999999999999986654
No 263
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=94.02 E-value=0.033 Score=47.64 Aligned_cols=26 Identities=19% Similarity=0.429 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+..|+|.|.+|+||||+...|...
T Consensus 6 ~~~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 6 KNILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEEECCCCCCHHHHHHHHHhC
Confidence 34578999999999999999998753
No 264
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=94.01 E-value=0.043 Score=47.41 Aligned_cols=26 Identities=27% Similarity=0.470 Sum_probs=22.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+.+..|+|.|.+|+|||||...|...
T Consensus 5 ~~~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 5 KSSYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECCCCCCHHHHHHHHHhC
Confidence 34678999999999999999999764
No 265
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.00 E-value=0.03 Score=53.46 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~ 48 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIV 48 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 589999999999999999998654
No 266
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.99 E-value=0.035 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|++.|.+|+||||+...|...
T Consensus 4 ~~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 4 LHKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999754
No 267
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.98 E-value=0.029 Score=55.91 Aligned_cols=27 Identities=26% Similarity=0.393 Sum_probs=23.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..+.|.|++|||||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 478999999999999999999887654
No 268
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.98 E-value=0.033 Score=48.42 Aligned_cols=24 Identities=38% Similarity=0.439 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|.|.+|+|||||...|...
T Consensus 7 ~~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 7 SYEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 468999999999999999999753
No 269
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=93.94 E-value=0.035 Score=50.52 Aligned_cols=24 Identities=29% Similarity=0.450 Sum_probs=20.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-.+++|+|.||+|||++|..++..
T Consensus 30 G~l~~i~G~pG~GKT~l~l~~~~~ 53 (251)
T 2zts_A 30 GTTVLLTGGTGTGKTTFAAQFIYK 53 (251)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHH
Confidence 358999999999999999987643
No 270
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=93.94 E-value=0.026 Score=53.48 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997644
No 271
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=93.93 E-value=0.038 Score=48.03 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+++..|++.|.+|+||||+...|...
T Consensus 16 ~~~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 16 ERELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHTTC
T ss_pred CCeeEEEEECCCCCCHHHHHHHHhcC
Confidence 45688999999999999999998753
No 272
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.92 E-value=0.036 Score=47.18 Aligned_cols=24 Identities=25% Similarity=0.426 Sum_probs=20.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+..|+|.|.+|+|||||...|..
T Consensus 3 ~~~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 3 ALYRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHC
T ss_pred eEEEEEEECCCCccHHHHHHHHhc
Confidence 346799999999999999998864
No 273
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=93.91 E-value=0.033 Score=49.46 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=20.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.++..|++.|.+|+||||+...|..
T Consensus 21 ~~~~ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 21 NKHGKLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ---CEEEEEESTTSSHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 3456899999999999999999975
No 274
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.90 E-value=0.043 Score=46.99 Aligned_cols=25 Identities=24% Similarity=0.413 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.++..|+|.|.+|+||||+...|..
T Consensus 6 ~~~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 6 ERPPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCCCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhC
Confidence 3467899999999999999999864
No 275
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=93.88 E-value=0.041 Score=48.11 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=22.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+..|+|.|.+|+||||+...|....
T Consensus 46 ~~~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 46 SYQPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998653
No 276
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.88 E-value=0.041 Score=49.37 Aligned_cols=27 Identities=22% Similarity=0.332 Sum_probs=23.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+..|+|.|++|+||||+...|....
T Consensus 10 ~~~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 10 SYQPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCCCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 345689999999999999999998754
No 277
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.84 E-value=0.033 Score=53.10 Aligned_cols=23 Identities=35% Similarity=0.345 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|.|++|||||||.+.|+.-
T Consensus 30 e~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 30 EVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 278
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=93.80 E-value=0.043 Score=46.99 Aligned_cols=25 Identities=36% Similarity=0.510 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
++..|+|.|.+|+|||||...|...
T Consensus 5 ~~~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 5 RQLKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHGG
T ss_pred ceEEEEEECcCCCCHHHHHHHHHhC
Confidence 4568999999999999999999753
No 279
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.78 E-value=0.029 Score=54.06 Aligned_cols=24 Identities=29% Similarity=0.226 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~ 56 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLE 56 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998654
No 280
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.77 E-value=0.038 Score=47.71 Aligned_cols=22 Identities=41% Similarity=0.466 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..|+|.|.+|+|||||...|..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5799999999999999999975
No 281
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.71 E-value=0.043 Score=46.21 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|.|.+|+|||||...|...
T Consensus 3 ~~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 3 EYKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHC
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 357999999999999999999753
No 282
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.70 E-value=0.031 Score=53.02 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 33 e~~~l~G~nGsGKSTLl~~l~Gl~ 56 (240)
T 1ji0_A 33 QIVTLIGANGAGKTTTLSAIAGLV 56 (240)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997654
No 283
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=93.70 E-value=0.026 Score=52.70 Aligned_cols=23 Identities=26% Similarity=0.325 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|.|++|||||||.+.|+..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 37899999999999999999853
No 284
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=93.70 E-value=0.04 Score=49.06 Aligned_cols=25 Identities=20% Similarity=0.420 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...|.|.|++|+|||||...|+...
T Consensus 29 ~~kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 29 LFKVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcCC
Confidence 3689999999999999999998643
No 285
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.68 E-value=0.031 Score=53.00 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--++.|.|++|||||||.+.|+.-+
T Consensus 28 Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 28 NSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3589999999999999999998654
No 286
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.66 E-value=0.031 Score=53.50 Aligned_cols=24 Identities=33% Similarity=0.375 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 34 e~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 34 DVTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997654
No 287
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.66 E-value=0.031 Score=54.60 Aligned_cols=24 Identities=33% Similarity=0.349 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 35 e~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 35 EVTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC
Confidence 489999999999999999997655
No 288
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.66 E-value=0.037 Score=53.47 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|.|++|||||||.+.|+.-
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999864
No 289
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=93.65 E-value=0.046 Score=48.69 Aligned_cols=23 Identities=22% Similarity=0.530 Sum_probs=20.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|+|.|++|+|||||...|+..
T Consensus 6 ~kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 6 FKVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 57899999999999999999864
No 290
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.65 E-value=0.031 Score=54.10 Aligned_cols=24 Identities=29% Similarity=0.380 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 488999999999999999998654
No 291
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=93.62 E-value=0.041 Score=52.42 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=24.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
.+++|.|++|+||||++..++..++..
T Consensus 32 ~~v~i~G~~G~GKT~Ll~~~~~~~~~~ 58 (350)
T 2qen_A 32 PLTLLLGIRRVGKSSLLRAFLNERPGI 58 (350)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHSSEE
T ss_pred CeEEEECCCcCCHHHHHHHHHHHcCcE
Confidence 489999999999999999999988733
No 292
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=93.61 E-value=0.053 Score=51.65 Aligned_cols=26 Identities=42% Similarity=0.528 Sum_probs=23.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
+++|.|++|+||||++..++..++..
T Consensus 32 ~v~i~G~~G~GKT~L~~~~~~~~~~~ 57 (357)
T 2fna_A 32 ITLVLGLRRTGKSSIIKIGINELNLP 57 (357)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred cEEEECCCCCCHHHHHHHHHHhcCCC
Confidence 89999999999999999999987644
No 293
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.59 E-value=0.048 Score=45.78 Aligned_cols=23 Identities=26% Similarity=0.514 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.|++.|.+|+||||+...|....
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58999999999999999998643
No 294
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.58 E-value=0.033 Score=52.42 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~ 58 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGEL 58 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999997654
No 295
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.58 E-value=0.033 Score=53.18 Aligned_cols=24 Identities=29% Similarity=0.350 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997654
No 296
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.55 E-value=0.038 Score=46.55 Aligned_cols=23 Identities=30% Similarity=0.569 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|++.|.+|+||||+...|...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998754
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=93.53 E-value=0.039 Score=55.89 Aligned_cols=25 Identities=32% Similarity=0.375 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-+|+|+|++||||||+...|+..+
T Consensus 136 g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 136 MGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhc
Confidence 3589999999999999999998866
No 298
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=93.52 E-value=0.04 Score=55.81 Aligned_cols=24 Identities=33% Similarity=0.411 Sum_probs=21.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-+|+|+|++||||||+.+.|+..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 389999999999999999998766
No 299
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=93.52 E-value=0.04 Score=54.93 Aligned_cols=25 Identities=24% Similarity=0.305 Sum_probs=22.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--++.|.|++|||||||++.|+.-+
T Consensus 126 Ge~vaIvGpsGsGKSTLl~lL~gl~ 150 (305)
T 2v9p_A 126 KNCLAFIGPPNTGKSMLCNSLIHFL 150 (305)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCcHHHHHHHHhhhc
Confidence 3589999999999999999999877
No 300
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=93.46 E-value=0.048 Score=46.56 Aligned_cols=25 Identities=32% Similarity=0.425 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|.|.+|+|||||...|...
T Consensus 8 ~~~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 8 ETHKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3468999999999999999999765
No 301
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.46 E-value=0.035 Score=53.79 Aligned_cols=24 Identities=33% Similarity=0.299 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~ 74 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLE 74 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCC
Confidence 489999999999999999998654
No 302
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=93.44 E-value=0.048 Score=48.74 Aligned_cols=27 Identities=19% Similarity=0.218 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+...|+|.|.+|+|||||...|....
T Consensus 5 ~~~~ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 5 SSQRAVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp ---CEEEEECSTTSSHHHHHHHHHHSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 345689999999999999999998654
No 303
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=93.44 E-value=0.078 Score=51.13 Aligned_cols=30 Identities=20% Similarity=0.216 Sum_probs=25.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNV 189 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~V 189 (473)
-+.|++.|.+|+||||++..+|..+ |..++
T Consensus 6 ~l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~ 38 (228)
T 2r8r_A 6 RLKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVM 38 (228)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEE
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHCCCCEE
Confidence 3679999999999999999998776 77654
No 304
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=93.43 E-value=0.2 Score=52.68 Aligned_cols=24 Identities=33% Similarity=0.433 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+.+|.|.|+.|+||||||..++.
T Consensus 151 ~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 151 DSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CceEEEEEcCCCCCHHHHHHHHHH
Confidence 457999999999999999999995
No 305
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.38 E-value=0.042 Score=46.44 Aligned_cols=24 Identities=29% Similarity=0.426 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|++.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKSsli~~l~~~ 29 (170)
T 1z0j_A 6 ELKVCLLGDTGVGKSSIMWRFVED 29 (170)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999999754
No 306
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.37 E-value=0.041 Score=48.01 Aligned_cols=24 Identities=38% Similarity=0.545 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+++|.+|+|||||...|...
T Consensus 21 ~~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 21 EYKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECcCCCCHHHHHHHHHcC
Confidence 468999999999999999999864
No 307
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.36 E-value=0.032 Score=52.53 Aligned_cols=24 Identities=25% Similarity=0.396 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 36 e~~~iiG~NGsGKSTLlk~l~Gl~ 59 (214)
T 1sgw_A 36 NVVNFHGPNGIGKTTLLKTISTYL 59 (214)
T ss_dssp CCEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 378999999999999999997654
No 308
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.36 E-value=0.038 Score=53.60 Aligned_cols=24 Identities=33% Similarity=0.362 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997655
No 309
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.35 E-value=0.05 Score=45.89 Aligned_cols=23 Identities=26% Similarity=0.452 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|++.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 3 DYRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 35789999999999999999975
No 310
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.34 E-value=0.048 Score=47.00 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|.|.+|+|||||...|...
T Consensus 10 ~~~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 10 YLIKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEEECCCCCCHHHHHHHHhcC
Confidence 3568999999999999999999753
No 311
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.34 E-value=0.046 Score=46.31 Aligned_cols=24 Identities=21% Similarity=0.642 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|++.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 6 SFKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEEECCTTSCHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 467999999999999999998754
No 312
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.33 E-value=0.038 Score=53.25 Aligned_cols=24 Identities=33% Similarity=0.426 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 489999999999999999997654
No 313
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.33 E-value=0.038 Score=53.15 Aligned_cols=24 Identities=33% Similarity=0.302 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 489999999999999999997654
No 314
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=93.31 E-value=0.074 Score=57.88 Aligned_cols=28 Identities=39% Similarity=0.465 Sum_probs=24.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.+..++|.|+||+||||+|+.|+..+
T Consensus 204 ~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 204 RRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp SSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 3456678999999999999999999987
No 315
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.31 E-value=0.045 Score=53.00 Aligned_cols=24 Identities=33% Similarity=0.512 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+.|.|++|+||||+.+.|+..+
T Consensus 3 f~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 3 FNIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHhCCC
Confidence 468999999999999999998765
No 316
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.30 E-value=0.051 Score=45.91 Aligned_cols=23 Identities=30% Similarity=0.504 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
++.|+|.|.+|+||||+...|..
T Consensus 3 ~~~i~v~G~~~~GKssli~~l~~ 25 (170)
T 1g16_A 3 IMKILLIGDSGVGKSCLLVRFVE 25 (170)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECcCCCCHHHHHHHHHh
Confidence 35799999999999999999975
No 317
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.30 E-value=0.039 Score=53.22 Aligned_cols=24 Identities=17% Similarity=0.231 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999997654
No 318
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=93.30 E-value=0.053 Score=60.31 Aligned_cols=27 Identities=37% Similarity=0.476 Sum_probs=23.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+.+..++|.|+||+||||+++.||.++
T Consensus 189 ~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 189 RTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp SSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444567899999999999999999987
No 319
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.30 E-value=0.04 Score=47.13 Aligned_cols=24 Identities=21% Similarity=0.427 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|.|.+|+||||+...|...
T Consensus 7 ~~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 7 LFKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999754
No 320
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.26 E-value=0.04 Score=52.92 Aligned_cols=24 Identities=25% Similarity=0.375 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 488999999999999999997644
No 321
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=93.25 E-value=0.048 Score=54.84 Aligned_cols=34 Identities=29% Similarity=0.392 Sum_probs=27.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
.-|+|.|.+|+||||+|..|..+ |... +++|.+.
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~-g~~l-v~dD~~~ 178 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR-GHRL-VADDNVE 178 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT-TCEE-EESSEEE
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc-CCce-ecCCeEE
Confidence 46999999999999999999775 7764 4676554
No 322
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=93.24 E-value=0.048 Score=55.36 Aligned_cols=25 Identities=24% Similarity=0.457 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+++|.|+||+||||+|..++...|
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G 148 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALG 148 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCC
Confidence 4789999999999999999998644
No 323
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=93.24 E-value=0.069 Score=46.90 Aligned_cols=26 Identities=35% Similarity=0.441 Sum_probs=22.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+..|+|.|.+|+|||||...|...
T Consensus 14 ~~~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 14 DQEVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp SSCEEEEEEESTTSSHHHHHHHHCCS
T ss_pred CCceEEEEECCCCCCHHHHHHHHhcC
Confidence 45678999999999999999998653
No 324
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.24 E-value=0.042 Score=46.29 Aligned_cols=24 Identities=21% Similarity=0.497 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|++.|.+|+||||+...|...
T Consensus 6 ~~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 6 QFKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHcC
Confidence 467999999999999999999753
No 325
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.24 E-value=0.04 Score=53.79 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 48 e~~~liG~NGsGKSTLlk~l~Gl~ 71 (279)
T 2ihy_A 48 DKWILYGLNGAGKTTLLNILNAYE 71 (279)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 488999999999999999998655
No 326
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=93.23 E-value=0.053 Score=51.61 Aligned_cols=31 Identities=16% Similarity=0.313 Sum_probs=26.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
-.+++++|++|+||||++..++.++ |...++
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli 45 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLV 45 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEE
Confidence 4699999999999999999999887 555444
No 327
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=93.18 E-value=0.048 Score=47.02 Aligned_cols=25 Identities=36% Similarity=0.488 Sum_probs=21.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++.|+|.|.+|+|||||...|....
T Consensus 4 ~~ki~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 4 EYKLVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEEEEECCCCCCHHHHHHHHHhCC
Confidence 4679999999999999999997543
No 328
>4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A*
Probab=93.14 E-value=0.059 Score=48.36 Aligned_cols=27 Identities=22% Similarity=0.367 Sum_probs=21.5
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...++.|+|.|.+|+||||+...|...
T Consensus 27 ~~~~~ki~vvG~~~~GKSsLi~~l~~~ 53 (204)
T 4gzl_A 27 QGQAIKCVVVGDGAVGKTCLLISYTTN 53 (204)
T ss_dssp ---CEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cCCeEEEEEECcCCCCHHHHHHHHHhC
Confidence 345688999999999999999988753
No 329
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=93.08 E-value=0.059 Score=46.23 Aligned_cols=25 Identities=24% Similarity=0.380 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|.|.+|+|||||...|...
T Consensus 17 ~~~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 17 ALHKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHhhC
Confidence 3468999999999999999999854
No 330
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=93.06 E-value=0.054 Score=52.96 Aligned_cols=26 Identities=23% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+..|+|.|+||+|||++|+.++...
T Consensus 24 ~~~~vLi~Ge~GtGKt~lAr~i~~~~ 49 (304)
T 1ojl_A 24 SDATVLIHGDSGTGKELVARALHACS 49 (304)
T ss_dssp TTSCEEEESCTTSCHHHHHHHHHHHS
T ss_pred CCCcEEEECCCCchHHHHHHHHHHhC
Confidence 34568999999999999999999855
No 331
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.04 E-value=0.044 Score=52.58 Aligned_cols=24 Identities=29% Similarity=0.264 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 32 e~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 32 DILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp CEEEEECCSSSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 488999999999999999997654
No 332
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.96 E-value=0.061 Score=47.45 Aligned_cols=26 Identities=27% Similarity=0.569 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.....|+|.|.+|+|||||...|...
T Consensus 6 ~~~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 6 KVLLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp -CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CcceEEEEECcCCCCHHHHHHHHHcC
Confidence 34578999999999999999998754
No 333
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=92.94 E-value=0.085 Score=52.01 Aligned_cols=25 Identities=16% Similarity=0.254 Sum_probs=22.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..++|.|++|+||||+|..||..+
T Consensus 18 ~~~~Lf~Gp~G~GKtt~a~~la~~~ 42 (305)
T 2gno_A 18 GISILINGEDLSYPREVSLELPEYV 42 (305)
T ss_dssp SEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999999999853
No 334
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.94 E-value=0.064 Score=46.92 Aligned_cols=24 Identities=29% Similarity=0.535 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|+..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999754
No 335
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=92.93 E-value=0.085 Score=47.20 Aligned_cols=33 Identities=15% Similarity=0.187 Sum_probs=24.6
Q ss_pred HHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 150 MMTRFHHQRVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 150 l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
++..+.-..++..|++.|.+|+|||||...|..
T Consensus 15 ~l~~~~~~~~~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 15 VLQFLGLYKKTGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp HHHHHTCTTCCEEEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHhhccCCCcEEEEECCCCCCHHHHHHHHhc
Confidence 333333334567899999999999999998853
No 336
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.91 E-value=0.069 Score=46.65 Aligned_cols=25 Identities=32% Similarity=0.367 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|++.|.+|+||||+...|...
T Consensus 22 ~~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 22 GLPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3568999999999999999999753
No 337
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=92.90 E-value=0.043 Score=55.18 Aligned_cols=24 Identities=38% Similarity=0.574 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+++|+|++||||||+.+.|+..+.
T Consensus 177 ~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 177 VIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp CEEEEESSSSCHHHHHHHHHTTSC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 789999999999999999988764
No 338
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.86 E-value=0.08 Score=46.26 Aligned_cols=25 Identities=24% Similarity=0.424 Sum_probs=22.1
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.....|+|.|.+|+|||||...|..
T Consensus 6 ~~~~ki~vvG~~~~GKSsli~~l~~ 30 (199)
T 2gf0_A 6 SNDYRVVVFGAGGVGKSSLVLRFVK 30 (199)
T ss_dssp CCCEEEEEEECTTSSHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCcHHHHHHHHHc
Confidence 4467899999999999999999976
No 339
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.84 E-value=0.076 Score=45.60 Aligned_cols=25 Identities=16% Similarity=0.270 Sum_probs=21.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+...|+|.|.+|+||||+...|...
T Consensus 7 ~~~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 7 RFIKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 4567999999999999999988754
No 340
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=92.84 E-value=0.072 Score=45.16 Aligned_cols=22 Identities=32% Similarity=0.563 Sum_probs=19.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..|+|.|.+|+|||||...|..
T Consensus 3 ~ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 3 FKVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4689999999999999999864
No 341
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.82 E-value=0.041 Score=55.33 Aligned_cols=34 Identities=26% Similarity=0.313 Sum_probs=27.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCCeEEcchhHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLPNVLQTDMVY 196 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~~Vi~tD~ir 196 (473)
.-|+|.|.||+||||+|..|.. .|... +++|.+.
T Consensus 148 ~gvli~G~sG~GKStlal~l~~-~G~~l-v~DD~v~ 181 (312)
T 1knx_A 148 VGVLLTGRSGIGKSECALDLIN-KNHLF-VGDDAIE 181 (312)
T ss_dssp EEEEEEESSSSSHHHHHHHHHT-TTCEE-EEEEEEE
T ss_pred EEEEEEcCCCCCHHHHHHHHHH-cCCEE-EeCCEEE
Confidence 4699999999999999999864 67664 5777654
No 342
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=92.81 E-value=0.052 Score=60.38 Aligned_cols=26 Identities=38% Similarity=0.593 Sum_probs=23.6
Q ss_pred CCe-EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPL-VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~-iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+|. .++|.|++|+|||++|+.|+..+
T Consensus 586 ~p~~~vLl~Gp~GtGKT~lA~~la~~~ 612 (854)
T 1qvr_A 586 RPIGSFLFLGPTGVGKTELAKTLAATL 612 (854)
T ss_dssp SCSEEEEEBSCSSSSHHHHHHHHHHHH
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHh
Confidence 454 89999999999999999999988
No 343
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.81 E-value=0.056 Score=46.12 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA 181 (473)
....|+|.|.+|+|||||...|.
T Consensus 8 ~~~~i~v~G~~~~GKssl~~~l~ 30 (181)
T 3tw8_B 8 HLFKLLIIGDSGVGKSSLLLRFA 30 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHh
Confidence 34689999999999999999885
No 344
>2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii}
Probab=92.80 E-value=0.22 Score=49.51 Aligned_cols=26 Identities=27% Similarity=0.356 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+..|+++|.+|+||||+...|+..
T Consensus 165 ~~~~~v~lvG~~gvGKSTLin~L~~~ 190 (357)
T 2e87_A 165 LEIPTVVIAGHPNVGKSTLLKALTTA 190 (357)
T ss_dssp SSSCEEEEECSTTSSHHHHHHHHCSS
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 34678999999999999999998653
No 345
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.78 E-value=0.063 Score=46.03 Aligned_cols=25 Identities=20% Similarity=0.484 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|.|.+|+|||||...|...
T Consensus 9 ~~~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 9 VAFKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3568999999999999999998753
No 346
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.78 E-value=0.076 Score=45.21 Aligned_cols=25 Identities=24% Similarity=0.395 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...|+|.|.+|+||||+...|....
T Consensus 15 ~~~i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 15 IFKYIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHSC
T ss_pred ceEEEEECCCCCCHHHHHHHHHcCC
Confidence 4689999999999999999997643
No 347
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.77 E-value=0.058 Score=57.69 Aligned_cols=26 Identities=27% Similarity=0.378 Sum_probs=23.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
..++|.|+||+||||+|+.|+..++.
T Consensus 61 ~~vll~Gp~GtGKTtlar~ia~~l~~ 86 (604)
T 3k1j_A 61 RHVLLIGEPGTGKSMLGQAMAELLPT 86 (604)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHTSCC
T ss_pred CEEEEEeCCCCCHHHHHHHHhccCCc
Confidence 36899999999999999999998853
No 348
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.76 E-value=0.062 Score=46.09 Aligned_cols=25 Identities=16% Similarity=0.387 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|.|.+|+|||||...|...
T Consensus 11 ~~~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 11 INAKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEEEECCTTSCHHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3467999999999999999998753
No 349
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=92.74 E-value=0.062 Score=55.61 Aligned_cols=26 Identities=42% Similarity=0.369 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
--+|+|+|++||||||+...|+..+.
T Consensus 167 ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 167 HGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 35899999999999999999988774
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=92.71 E-value=0.057 Score=47.43 Aligned_cols=22 Identities=27% Similarity=0.567 Sum_probs=19.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..|+|.|.+|+|||||...|+.
T Consensus 3 ~kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 3 MKLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp CEEEEESCTTSSHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4689999999999999999875
No 351
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.71 E-value=0.053 Score=52.54 Aligned_cols=24 Identities=21% Similarity=0.364 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 31 e~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 31 EKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SEEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999998654
No 352
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=92.71 E-value=0.12 Score=47.94 Aligned_cols=32 Identities=19% Similarity=0.129 Sum_probs=27.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVLQ 191 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~ 191 (473)
-.+++++|++|+||||.+..++.++ |...++.
T Consensus 8 g~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 8 GWVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 4699999999999999999999887 6666553
No 353
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.71 E-value=0.067 Score=46.75 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 6 ~~~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 6 VKCKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999999764
No 354
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.66 E-value=0.073 Score=46.00 Aligned_cols=24 Identities=33% Similarity=0.530 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999854
No 355
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.66 E-value=0.068 Score=46.84 Aligned_cols=25 Identities=16% Similarity=0.454 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+..|+|+|.+|+|||||...|...
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 24 FVFKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEEEESSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHhcC
Confidence 3568999999999999999999764
No 356
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.65 E-value=0.043 Score=48.80 Aligned_cols=24 Identities=21% Similarity=0.347 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
....|.|.|++|+|||||...|+.
T Consensus 25 ~~~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 25 TGIEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp CSEEEEEEECTTSSHHHHHTTTCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhC
Confidence 456899999999999999998753
No 357
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.63 E-value=0.078 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 14 ~~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 14 LHKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 468999999999999999999754
No 358
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=92.59 E-value=0.066 Score=53.64 Aligned_cols=26 Identities=27% Similarity=0.300 Sum_probs=23.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.-.++.|+|+||||||||+..|+...
T Consensus 130 ~G~i~~I~G~~GsGKTTL~~~l~~~~ 155 (349)
T 1pzn_A 130 TQAITEVFGEFGSGKTQLAHTLAVMV 155 (349)
T ss_dssp SSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 34699999999999999999999876
No 359
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=92.58 E-value=0.061 Score=54.68 Aligned_cols=26 Identities=19% Similarity=0.277 Sum_probs=22.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..+++|+|+||+|||||+..++..+
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~ 85 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEA 85 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998764
No 360
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.57 E-value=0.061 Score=45.79 Aligned_cols=23 Identities=22% Similarity=0.452 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+..|+|.|.+|+|||||...|..
T Consensus 14 ~~~i~v~G~~~~GKssli~~l~~ 36 (179)
T 2y8e_A 14 KFKLVFLGEQSVGKTSLITRFMY 36 (179)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHc
Confidence 36799999999999999999974
No 361
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.57 E-value=0.088 Score=46.45 Aligned_cols=25 Identities=24% Similarity=0.458 Sum_probs=22.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 27 ~~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 27 AEVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 4578999999999999999999864
No 362
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=92.55 E-value=0.1 Score=52.26 Aligned_cols=25 Identities=24% Similarity=0.337 Sum_probs=22.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+|.|+|+||+|||||...|...+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 5789999999999999999998754
No 363
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.53 E-value=0.063 Score=46.41 Aligned_cols=24 Identities=33% Similarity=0.472 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 10 ~~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 10 LFKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999754
No 364
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=92.52 E-value=0.069 Score=52.44 Aligned_cols=26 Identities=19% Similarity=0.362 Sum_probs=22.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+--+++|+|.||+||||++..+|...
T Consensus 67 ~G~l~li~G~pG~GKTtl~l~ia~~~ 92 (315)
T 3bh0_A 67 RRNFVLIAARPSMGKTAFALKQAKNM 92 (315)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34599999999999999999998654
No 365
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=92.52 E-value=0.061 Score=54.82 Aligned_cols=24 Identities=25% Similarity=0.357 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 488999999999999999998654
No 366
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=92.48 E-value=0.088 Score=44.37 Aligned_cols=22 Identities=36% Similarity=0.462 Sum_probs=19.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|++.|.+|+||||+...|...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999754
No 367
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=92.48 E-value=0.2 Score=49.66 Aligned_cols=28 Identities=32% Similarity=0.271 Sum_probs=24.2
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.....+|.|.|++|+||||+...|+..+
T Consensus 53 ~~~~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 53 CGNTLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp CSCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred cCCCEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4556789999999999999999998765
No 368
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=92.46 E-value=0.092 Score=46.58 Aligned_cols=26 Identities=31% Similarity=0.512 Sum_probs=21.7
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.++..|+|+|.+|+|||||...|...
T Consensus 26 ~~~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 26 QKAYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp --CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhC
Confidence 45678999999999999999999754
No 369
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.43 E-value=0.089 Score=45.95 Aligned_cols=25 Identities=24% Similarity=0.359 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
++...|+|.|.+|+||||+...|..
T Consensus 14 ~~~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 14 HQEHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCccEEEEECCCCCCHHHHHHHHhc
Confidence 4567899999999999999999974
No 370
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.42 E-value=0.072 Score=45.04 Aligned_cols=21 Identities=33% Similarity=0.521 Sum_probs=18.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHH
Q 011994 161 LVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA 181 (473)
..|+|.|.+|+|||||...|.
T Consensus 3 ~ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 3 YKVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp CEEEEEESTTSSHHHHHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHc
Confidence 468999999999999999884
No 371
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=92.33 E-value=0.072 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.232 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 488999999999999999998654
No 372
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.33 E-value=0.098 Score=45.25 Aligned_cols=25 Identities=20% Similarity=0.279 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
...|+|.|.+|+|||||.+.|....
T Consensus 14 ~~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 14 NFKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHTS
T ss_pred ccEEEEECCCCCCHHHHHHHHHhhc
Confidence 4679999999999999998887654
No 373
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=92.28 E-value=0.074 Score=54.09 Aligned_cols=24 Identities=25% Similarity=0.252 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 30 EFVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHCCC
Confidence 488999999999999999998654
No 374
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=92.26 E-value=0.089 Score=46.05 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+++.|+|.|.+|+|||||...|...
T Consensus 19 ~~~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 19 RIFKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHHcC
Confidence 4568999999999999999998753
No 375
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=92.25 E-value=0.074 Score=54.13 Aligned_cols=24 Identities=25% Similarity=0.275 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 30 EFMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 488999999999999999998654
No 376
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.23 E-value=0.081 Score=46.09 Aligned_cols=25 Identities=28% Similarity=0.425 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.++.|+|.|.+|+|||||...|...
T Consensus 15 ~~~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 15 YLFKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHcC
Confidence 3568999999999999999999753
No 377
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.22 E-value=0.1 Score=44.83 Aligned_cols=23 Identities=22% Similarity=0.423 Sum_probs=20.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|++.|.+|+|||||...|..
T Consensus 5 ~~~i~~~G~~~~GKssl~~~l~~ 27 (186)
T 1mh1_A 5 AIKCVVVGDGAVGKTCLLISYTT 27 (186)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEEECCCCCCHHHHHHHHHc
Confidence 45799999999999999998875
No 378
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.21 E-value=0.093 Score=52.31 Aligned_cols=28 Identities=29% Similarity=0.324 Sum_probs=24.1
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.....++.|.|+||+||||+...|+..+
T Consensus 52 ~~~g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 52 TGRAIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp CCCSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3456799999999999999999998655
No 379
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=92.20 E-value=0.075 Score=54.62 Aligned_cols=24 Identities=25% Similarity=0.310 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 30 e~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 30 EFVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHHcCC
Confidence 488999999999999999998654
No 380
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.16 E-value=0.065 Score=46.22 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+..|+|.|.+|+|||||...|..
T Consensus 6 ~~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 6 SRKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred eEEEEEECcCCCCHHHHHHHHHc
Confidence 46799999999999999999874
No 381
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.15 E-value=0.081 Score=46.49 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+.+.|+|.|.+|+|||||...|...
T Consensus 21 ~~~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 21 EEMELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CccEEEEECCCCCCHHHHHHHHHcC
Confidence 3568999999999999999999753
No 382
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=92.11 E-value=0.087 Score=46.81 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+.+.|+|.|.+|+|||||...|..
T Consensus 23 ~~~ki~vvG~~~~GKSsli~~l~~ 46 (201)
T 3oes_A 23 RYRKVVILGYRCVGKTSLAHQFVE 46 (201)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHH
T ss_pred CcEEEEEECCCCcCHHHHHHHHHh
Confidence 356899999999999999999975
No 383
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=92.10 E-value=0.077 Score=53.37 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..+++|.|+||+||||++..++...
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~ 85 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANA 85 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998654
No 384
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.10 E-value=0.065 Score=52.70 Aligned_cols=24 Identities=21% Similarity=0.429 Sum_probs=21.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 489999999999999999997544
No 385
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=92.09 E-value=0.19 Score=51.69 Aligned_cols=23 Identities=22% Similarity=0.384 Sum_probs=21.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++|.|++|+||||++..++..+
T Consensus 47 ~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 47 HVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 78999999999999999999877
No 386
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=92.06 E-value=0.081 Score=53.94 Aligned_cols=24 Identities=21% Similarity=0.261 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 488999999999999999998654
No 387
>3czq_A Putative polyphosphate kinase 2; structural genomics, APC6299, PSI-2, structure initiative; HET: MSE GOL; 2.23A {Sinorhizobium meliloti}
Probab=92.05 E-value=0.27 Score=49.30 Aligned_cols=57 Identities=14% Similarity=0.180 Sum_probs=40.8
Q ss_pred cccHHHHHHHHHHHHHhcCCChhhHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 121 DVSQSDLEANLFKLMERRGYGEEYISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 121 ~I~~~eLe~~v~~lL~~~~yge~~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
.+++++.++.+..+-.+ ...+-..++..+.|++|+|-|.-||||+|.++.|...|+-
T Consensus 56 ~~~k~~y~~~l~~lq~~---------L~~lQ~~~~~~~~~vlIvfEG~DgAGKgt~Ik~L~e~Ldp 112 (304)
T 3czq_A 56 KLDREEYEETLTKLQIE---------LVKVQFWMQATGKRVMAVFEGRDAAGKGGAIHATTANMNP 112 (304)
T ss_dssp CCCHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCEEEEEEESTTSSHHHHHHHHHTTSCT
T ss_pred cCCHHHHHHHHHHHHHH---------HHHHHHHHHHcCCCeEEEEeCCCCCCHHHHHHHHHHHhcc
Confidence 46677766666554332 1223333344567999999999999999999999999953
No 388
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.05 E-value=0.091 Score=45.61 Aligned_cols=24 Identities=33% Similarity=0.555 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|+|.+|+|||||...|...
T Consensus 15 ~~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 15 TLKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999999754
No 389
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=92.04 E-value=0.081 Score=54.05 Aligned_cols=24 Identities=21% Similarity=0.252 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 38 e~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 38 EFLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCChHHHHHHHHHcCC
Confidence 488999999999999999998644
No 390
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.01 E-value=0.056 Score=53.83 Aligned_cols=24 Identities=25% Similarity=0.512 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 162 VILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+++|.|++||||||+.+.|+..+.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCc
Confidence 789999999999999999987763
No 391
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.98 E-value=0.085 Score=46.39 Aligned_cols=26 Identities=27% Similarity=0.492 Sum_probs=22.3
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..++.|+|.|.+|+|||||...|...
T Consensus 21 ~~~~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 21 KKALKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceeeEEEEECcCCCCHHHHHHHHhcC
Confidence 34578999999999999999998754
No 392
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.98 E-value=0.09 Score=48.56 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.++.|+|.|.+|+|||||...|...
T Consensus 28 ~~~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 28 SQLRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHTS
T ss_pred CceEEEEECCCCCCHHHHHHHHcCC
Confidence 4578999999999999999998753
No 393
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=91.97 E-value=0.11 Score=45.99 Aligned_cols=25 Identities=20% Similarity=0.286 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+.+.|+|.|.+|+|||||...|...
T Consensus 19 ~~~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 19 PELKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHHHS
T ss_pred CeeEEEEECCCCCCHHHHHHHHhcC
Confidence 3468999999999999999888754
No 394
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.97 E-value=0.11 Score=45.87 Aligned_cols=24 Identities=29% Similarity=0.469 Sum_probs=20.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..+.|+|+|.+|+|||||...|..
T Consensus 19 ~~~~i~v~G~~~~GKSsli~~l~~ 42 (213)
T 3cph_A 19 SIMKILLIGDSGVGKSCLLVRFVE 42 (213)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 356899999999999999999874
No 395
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=91.95 E-value=0.09 Score=45.45 Aligned_cols=22 Identities=36% Similarity=0.590 Sum_probs=19.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.|++.|.+|+||||+...|...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5889999999999999999753
No 396
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=91.94 E-value=0.1 Score=46.06 Aligned_cols=25 Identities=16% Similarity=0.388 Sum_probs=21.8
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 20 ~~~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 20 LEVNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp CEEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCcHHHHHHHHHhC
Confidence 4568999999999999999988764
No 397
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.92 E-value=0.11 Score=45.03 Aligned_cols=23 Identities=30% Similarity=0.397 Sum_probs=20.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|+|.|.+|+||||+...|...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 47899999999999999998654
No 398
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=91.90 E-value=0.089 Score=45.83 Aligned_cols=25 Identities=24% Similarity=0.355 Sum_probs=21.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+...|+|.|.+|+|||||...|...
T Consensus 20 ~~~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 20 QEHKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp -CEEEEEEEETTSSHHHHHHHHHTT
T ss_pred ceeEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999999753
No 399
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=91.89 E-value=0.092 Score=51.59 Aligned_cols=25 Identities=20% Similarity=0.258 Sum_probs=22.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+++|+|+||+||||++..|+...
T Consensus 107 G~i~~i~G~~GsGKT~la~~la~~~ 131 (324)
T 2z43_A 107 RTMTEFFGEFGSGKTQLCHQLSVNV 131 (324)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CcEEEEECCCCCCHhHHHHHHHHHH
Confidence 4599999999999999999999764
No 400
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=91.80 E-value=0.16 Score=48.75 Aligned_cols=33 Identities=24% Similarity=0.284 Sum_probs=26.0
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
+.+.+|.|+|-.|+||||+|..||..| |.++++
T Consensus 39 ~~~~vI~v~~KGGvGKTT~a~nLA~~La~~G~~Vll 74 (307)
T 3end_A 39 TGAKVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQ 74 (307)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCceEEEEECCCCccHHHHHHHHHHHHHHCCCeEEE
Confidence 356677778999999999999998876 666554
No 401
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.80 E-value=0.11 Score=46.09 Aligned_cols=25 Identities=32% Similarity=0.468 Sum_probs=21.6
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
++...|+|.|.+|+|||||...|..
T Consensus 27 ~~~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 27 KKQMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHCS
T ss_pred CCccEEEEECCCCCCHHHHHHHHHh
Confidence 4567899999999999999998853
No 402
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=91.77 E-value=0.066 Score=54.18 Aligned_cols=24 Identities=17% Similarity=0.184 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 27 e~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 27 EYFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp CEEEEECCCTHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCccHHHHHHHHHcCC
Confidence 488999999999999999998654
No 403
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=91.74 E-value=0.09 Score=51.18 Aligned_cols=25 Identities=24% Similarity=0.173 Sum_probs=22.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...+++|+|+||+||||+|..++..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999975
No 404
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=91.74 E-value=0.086 Score=54.28 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
-++.|+|+||||||||+..|+..
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~ 201 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVT 201 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHH
T ss_pred cEEEEEcCCCCChHHHHHHHHHH
Confidence 48999999999999999988643
No 405
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=91.73 E-value=0.1 Score=52.83 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=22.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..+++|+|+||+||||+|..|+...
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 34699999999999999999998754
No 406
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.70 E-value=0.083 Score=45.43 Aligned_cols=24 Identities=29% Similarity=0.336 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|++.|.+|+|||||...|...
T Consensus 7 ~~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 7 ELRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEEECCGGGCHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 467999999999999999999763
No 407
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.66 E-value=0.056 Score=53.75 Aligned_cols=24 Identities=29% Similarity=0.324 Sum_probs=21.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|+|++|||||||.+.|+.-+
T Consensus 81 e~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 81 QTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp CEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CEEEEECCCCchHHHHHHHHHcCC
Confidence 489999999999999999997655
No 408
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=91.65 E-value=0.12 Score=45.19 Aligned_cols=24 Identities=25% Similarity=0.445 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 22 ~~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 22 MFKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCCHHHHHHHHHcC
Confidence 468999999999999999998753
No 409
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=91.63 E-value=0.12 Score=51.53 Aligned_cols=25 Identities=16% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...+++|+|+||+||||++..|+..
T Consensus 121 ~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 121 SMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999999986
No 410
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=91.61 E-value=0.13 Score=45.40 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=20.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
....|+|.|.+|+|||||...|..
T Consensus 19 ~~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 19 RGVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp -CEEEEEECSTTSSHHHHHHHHHC
T ss_pred cceEEEEECCCCCCHHHHHHHHHh
Confidence 456899999999999999998864
No 411
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=91.58 E-value=0.097 Score=54.59 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..+.+|+|.|++|+||||+|..++.
T Consensus 145 ~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 145 GEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp TSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCceEEEEcCCCCCHHHHHHHHHh
Confidence 3467999999999999999999864
No 412
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.58 E-value=0.098 Score=53.55 Aligned_cols=24 Identities=25% Similarity=0.195 Sum_probs=21.2
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+.-+
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 488999999999999999998644
No 413
>3izq_1 HBS1P, elongation factor 1 alpha-like protein; NO-GO mRNA decay, ribosomal protein,hydrolase; 9.50A {Saccharomyces cerevisiae}
Probab=91.53 E-value=0.18 Score=54.45 Aligned_cols=28 Identities=32% Similarity=0.329 Sum_probs=23.4
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.++.|+|+|.+++|||||...|....
T Consensus 164 ~k~~lkV~ivG~~n~GKSTLin~Ll~~~ 191 (611)
T 3izq_1 164 ALPHLSFVVLGHVDAGKSTLMGRLLYDL 191 (611)
T ss_dssp CCCCCEEEEECCSSSCHHHHHHHHHSCS
T ss_pred cCCceEEEEEECCCCCHHHHHHHHHHhc
Confidence 3456789999999999999999997543
No 414
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=91.53 E-value=0.12 Score=48.29 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
..+..|+|.|.+|+|||||...|...-
T Consensus 20 ~~~~~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 20 RSELRIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp -CCEEEEEEECTTSCHHHHHHHHHTSC
T ss_pred CCceEEEEECCCCCCHHHHHHHHhCCC
Confidence 346789999999999999999997543
No 415
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=91.52 E-value=0.13 Score=45.16 Aligned_cols=25 Identities=24% Similarity=0.304 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
|-+.+|.|++|+||||+...|.-.|
T Consensus 23 ~g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 23 EGINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHH
Confidence 5688999999999999999987655
No 416
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.096 Score=46.17 Aligned_cols=24 Identities=33% Similarity=0.493 Sum_probs=21.4
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 23 ~~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 23 ELKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHC
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999999754
No 417
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.50 E-value=0.15 Score=49.87 Aligned_cols=24 Identities=29% Similarity=0.547 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++.|.|+||+|||||.+.|+ .+.
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~~ 189 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GEE 189 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SCC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hhh
Confidence 488999999999999999998 553
No 418
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.49 E-value=0.13 Score=45.10 Aligned_cols=25 Identities=24% Similarity=0.428 Sum_probs=22.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.|+|.|.+|+|||||...|....
T Consensus 23 ~~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 23 MFKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eeEEEEECCCCcCHHHHHHHHhcCC
Confidence 4689999999999999999998654
No 419
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=91.43 E-value=0.28 Score=48.96 Aligned_cols=39 Identities=28% Similarity=0.338 Sum_probs=30.5
Q ss_pred ccCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 156 HQRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 156 ~~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
......++++.|-.|+||||+|..||..+ |.++++ .+|.
T Consensus 22 ~~~~~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 64 (349)
T 3ug7_A 22 KKDGTKYIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVSTDP 64 (349)
T ss_dssp SSCSCEEEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEECCT
T ss_pred ccCCCEEEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEeCCC
Confidence 34556799999999999999999998776 776554 4565
No 420
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=91.43 E-value=0.097 Score=53.81 Aligned_cols=24 Identities=25% Similarity=0.292 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++||||||+.+.|+.-+
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 489999999999999999998543
No 421
>2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major}
Probab=91.41 E-value=0.096 Score=45.71 Aligned_cols=24 Identities=25% Similarity=0.373 Sum_probs=20.9
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA 181 (473)
+++..|++.|.+|+||||+...|.
T Consensus 20 ~~~~~i~v~G~~~~GKssli~~l~ 43 (189)
T 2x77_A 20 DRKIRVLMLGLDNAGKTSILYRLH 43 (189)
T ss_dssp TSCEEEEEEEETTSSHHHHHHHTC
T ss_pred CCceEEEEECCCCCCHHHHHHHHH
Confidence 356789999999999999999873
No 422
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=91.37 E-value=0.12 Score=49.01 Aligned_cols=23 Identities=30% Similarity=0.404 Sum_probs=20.4
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+.|.|.|.+|+|||||...|...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 57999999999999999999643
No 423
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=91.34 E-value=0.12 Score=45.22 Aligned_cols=24 Identities=33% Similarity=0.605 Sum_probs=20.6
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+..|+|.|.+|+|||||...|..
T Consensus 16 ~~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 16 TKLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp CEEEEEEECCTTSCHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhc
Confidence 346899999999999999998853
No 424
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=91.32 E-value=0.089 Score=55.05 Aligned_cols=24 Identities=17% Similarity=0.364 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 478999999999999999998765
No 425
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.30 E-value=0.13 Score=45.31 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 8 MFKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 357999999999999999998653
No 426
>2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens}
Probab=91.30 E-value=0.12 Score=46.79 Aligned_cols=24 Identities=17% Similarity=0.389 Sum_probs=21.2
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
++..|+|.|.+|+|||||...|..
T Consensus 33 ~~~ki~vvG~~~vGKSsli~~l~~ 56 (214)
T 2j1l_A 33 RSVKVVLVGDGGCGKTSLLMVFAD 56 (214)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHC
T ss_pred ceEEEEEECcCCCCHHHHHHHHHc
Confidence 457899999999999999999864
No 427
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=91.27 E-value=0.065 Score=54.24 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=21.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+--+
T Consensus 32 e~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 32 ERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 488999999999999999998644
No 428
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=91.26 E-value=0.05 Score=58.51 Aligned_cols=27 Identities=19% Similarity=0.245 Sum_probs=23.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcCCC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLNLP 187 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg~~ 187 (473)
..|||.|+||+|||++|+.|+..++..
T Consensus 328 ~~vLL~GppGtGKT~LAr~la~~~~r~ 354 (595)
T 3f9v_A 328 IHILIIGDPGTAKSQMLQFISRVAPRA 354 (595)
T ss_dssp CCEEEEESSCCTHHHHHHSSSTTCSCE
T ss_pred cceEEECCCchHHHHHHHHHHHhCCCc
Confidence 368999999999999999999888644
No 429
>1zcb_A G alpha I/13; GTP-binding, lipoprotein, membrane, transducer, signaling PR; HET: GDP; 2.00A {Mus musculus} SCOP: a.66.1.1 c.37.1.8 PDB: 3ab3_A* 3cx8_A* 3cx7_A* 3cx6_A* 1zca_A*
Probab=91.24 E-value=0.13 Score=52.17 Aligned_cols=25 Identities=32% Similarity=0.329 Sum_probs=22.2
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+++..|++.|.+||||||+++++.-
T Consensus 31 ~~~~killlG~~~SGKST~~kq~~i 55 (362)
T 1zcb_A 31 ARLVKILLLGAGESGKSTFLKQMRI 55 (362)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cCccEEEEECCCCCcHHHHHHHHHH
Confidence 5578899999999999999999954
No 430
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.23 E-value=0.11 Score=46.12 Aligned_cols=23 Identities=26% Similarity=0.471 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|+|.|.+|+|||||...|..
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~ 30 (206)
T 2bcg_Y 8 LFKLLLIGNSGVGKSCLLLRFSD 30 (206)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 46799999999999999999865
No 431
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.21 E-value=0.15 Score=44.81 Aligned_cols=24 Identities=25% Similarity=0.437 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 21 ~~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 21 LFKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEEESSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhcC
Confidence 457999999999999999999753
No 432
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=91.17 E-value=0.088 Score=55.81 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=22.1
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.+|+|+|++||||||+.+.|+..+.
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~ 285 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIP 285 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999987663
No 433
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=91.17 E-value=0.18 Score=50.45 Aligned_cols=37 Identities=41% Similarity=0.441 Sum_probs=29.0
Q ss_pred cCCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cch
Q 011994 157 QRVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTD 193 (473)
Q Consensus 157 ~~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD 193 (473)
.....++++.|-.|+||||+|..||..+ |.++++ .+|
T Consensus 13 ~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~D 53 (334)
T 3iqw_A 13 QRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLSTD 53 (334)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEECC
T ss_pred CCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEECC
Confidence 3446789999999999999999999877 555443 445
No 434
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.14 E-value=0.12 Score=53.32 Aligned_cols=25 Identities=32% Similarity=0.503 Sum_probs=22.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|+||+||||++..++..+
T Consensus 203 G~liiI~G~pG~GKTtl~l~ia~~~ 227 (454)
T 2r6a_A 203 SDLIIVAARPSVGKTAFALNIAQNV 227 (454)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999998754
No 435
>2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens}
Probab=91.12 E-value=0.11 Score=45.51 Aligned_cols=25 Identities=28% Similarity=0.369 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+...|+|.|.+|+|||||...|...
T Consensus 20 ~~~ki~v~G~~~~GKSsli~~l~~~ 44 (190)
T 2h57_A 20 KEVHVLCLGLDNSGKTTIINKLKPS 44 (190)
T ss_dssp -CEEEEEEECTTSSHHHHHHHTSCG
T ss_pred CccEEEEECCCCCCHHHHHHHHhcC
Confidence 4578999999999999999988644
No 436
>2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum}
Probab=91.04 E-value=0.14 Score=46.62 Aligned_cols=24 Identities=25% Similarity=0.416 Sum_probs=21.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+..|+|.|.+|+|||||...|..
T Consensus 28 ~~~kI~vvG~~~vGKSsLin~l~~ 51 (228)
T 2qu8_A 28 HKKTIILSGAPNVGKSSFMNIVSR 51 (228)
T ss_dssp TSEEEEEECSTTSSHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhC
Confidence 356899999999999999998864
No 437
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.01 E-value=0.11 Score=46.33 Aligned_cols=24 Identities=33% Similarity=0.450 Sum_probs=21.1
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+..|+|.|.+|+|||||...|..
T Consensus 24 ~~~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 24 FLFKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHC
T ss_pred cceEEEEECcCCCCHHHHHHHHHh
Confidence 457899999999999999999864
No 438
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=90.99 E-value=0.2 Score=53.67 Aligned_cols=31 Identities=26% Similarity=0.278 Sum_probs=25.3
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc---CCCeEEc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL---NLPNVLQ 191 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi~ 191 (473)
.+++|.|+||+||||++..|+..+ |...++.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 488999999999999999998755 6665543
No 439
>3gee_A MNME, tRNA modification GTPase MNME; G protein, cytoplasm, GTP- binding, hydrolase, magnesium, metal-binding, nucleotide- binding, potassium; HET: GDP FON; 2.95A {Chlorobium tepidum} PDB: 3gei_A*
Probab=90.96 E-value=0.41 Score=50.21 Aligned_cols=25 Identities=24% Similarity=0.365 Sum_probs=20.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.++.|+|+|.||+|||||...|...
T Consensus 232 ~~~kV~ivG~~nvGKSSLln~L~~~ 256 (476)
T 3gee_A 232 EGVSTVIAGKPNAGKSTLLNTLLGQ 256 (476)
T ss_dssp HCEEEEEECCTTSSHHHHHHHCC--
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 3567999999999999999988653
No 440
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=90.88 E-value=0.14 Score=46.40 Aligned_cols=25 Identities=28% Similarity=0.420 Sum_probs=21.9
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 27 ~~~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 27 VKCKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred eeeEEEEECCCCCCHHHHHHHHhcC
Confidence 4568999999999999999999764
No 441
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=90.83 E-value=0.095 Score=51.51 Aligned_cols=24 Identities=25% Similarity=0.358 Sum_probs=20.9
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+++|.|++||||||+.+.|....
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSC
T ss_pred cEEEEEecCCCCHHHHHHHHHhhc
Confidence 378899999999999999998643
No 442
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=90.79 E-value=0.19 Score=49.41 Aligned_cols=35 Identities=26% Similarity=0.387 Sum_probs=28.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
..++++.|-.|+||||+|..||..+ |.++++ .+|.
T Consensus 14 ~~i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~D~ 52 (324)
T 3zq6_A 14 TTFVFIGGKGGVGKTTISAATALWMARSGKKTLVISTDP 52 (324)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEECCS
T ss_pred eEEEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeCCC
Confidence 5799999999999999999998766 666543 4554
No 443
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=90.73 E-value=0.15 Score=46.29 Aligned_cols=29 Identities=28% Similarity=0.292 Sum_probs=23.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
.|.|.|-.|+||||+|..||..| |.++++
T Consensus 2 kI~vs~kGGvGKTt~a~~LA~~la~~g~~Vll 33 (254)
T 3kjh_A 2 KLAVAGKGGVGKTTVAAGLIKIMASDYDKIYA 33 (254)
T ss_dssp EEEEECSSSHHHHHHHHHHHHHHTTTCSCEEE
T ss_pred EEEEecCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 35669999999999999999887 666543
No 444
>1p6x_A Thymidine kinase; P-loop, LID, transferase; HET: THM; 2.00A {Equid herpesvirus 4} SCOP: c.37.1.1 PDB: 1p72_A* 1p73_A* 1p75_A*
Probab=90.66 E-value=0.096 Score=52.93 Aligned_cols=28 Identities=25% Similarity=0.217 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
+++.|.|-|+-|+||||+++.|++.|+.
T Consensus 6 ~~~fI~~EG~dGaGKTT~~~~La~~L~~ 33 (334)
T 1p6x_A 6 TIVRIYLDGVYGIGKSTTGRVMASAASG 33 (334)
T ss_dssp EEEEEEEECSTTSSHHHHHHHHHSGGGC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4578999999999999999999999864
No 445
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=90.59 E-value=0.12 Score=50.50 Aligned_cols=24 Identities=25% Similarity=0.397 Sum_probs=20.8
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.++.|.|+||+|||||.+.|+..+
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~ 193 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGL 193 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTC
T ss_pred CeEEEECCCCCcHHHHHHHhcccc
Confidence 378999999999999999997544
No 446
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=90.57 E-value=0.95 Score=57.70 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=45.5
Q ss_pred hcCcccccHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 116 DNSLLDVSQSDLEANLFKLMERRGYGEE--YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 116 ~~~v~~I~~~eLe~~v~~lL~~~~yge~--~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
+-..+.....+|+++|.+.+.+.++... .+.+.--..+....| .=+|++|++|+||||.-+.|++.+.
T Consensus 862 gv~~~~~~~~~l~~ai~~~~~~~~L~~~~~~v~KviQLye~~~vR--hGvmlVGp~gsGKTt~~~~L~~al~ 931 (3245)
T 3vkg_A 862 GSQLQPIQMDQLRKKIQEIAKQRHLVTKQEWVEKILQLHQILNIN--HGVMMVGPSGGGKTTSWEVYLEAIE 931 (3245)
T ss_dssp TCCCCCCCCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTTC--SEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCCCCCchHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhe--eeEEEECCCCCCHHHHHHHHHHHHH
Confidence 4445667778899999999988776432 222211111111222 3589999999999999999998874
No 447
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=90.54 E-value=0.15 Score=45.65 Aligned_cols=23 Identities=17% Similarity=0.375 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
+..|+|.|.+|+|||||...|..
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~ 47 (207)
T 2fv8_A 25 RKKLVVVGDGACGKTCLLIVFSK 47 (207)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHH
T ss_pred CcEEEEECcCCCCHHHHHHHHhc
Confidence 46799999999999999999875
No 448
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=90.51 E-value=0.14 Score=46.37 Aligned_cols=25 Identities=28% Similarity=0.465 Sum_probs=21.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 25 ~~~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 25 FLFKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred cceEEEEECcCCCCHHHHHHHHHhC
Confidence 3468999999999999999998764
No 449
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.51 E-value=0.13 Score=46.06 Aligned_cols=22 Identities=32% Similarity=0.539 Sum_probs=19.8
Q ss_pred CeEEEEEcCCCCcHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA 181 (473)
...|+|.|.+|+|||||...|.
T Consensus 23 ~~ki~vvG~~~vGKSsLi~~l~ 44 (195)
T 3cbq_A 23 IFKVMLVGESGVGKSTLAGTFG 44 (195)
T ss_dssp EEEEEEECSTTSSHHHHHHHTC
T ss_pred EEEEEEECCCCCCHHHHHHHHH
Confidence 4689999999999999999885
No 450
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.45 E-value=0.17 Score=44.69 Aligned_cols=23 Identities=22% Similarity=0.559 Sum_probs=20.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+.|+|.|.+|+|||||...|..
T Consensus 26 ~~ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 26 KLQVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHhc
Confidence 35799999999999999998853
No 451
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=90.41 E-value=0.15 Score=51.99 Aligned_cols=25 Identities=28% Similarity=0.385 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhcC
Q 011994 161 LVILVCGTACVGKSTIATQLAQRLN 185 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~Lg 185 (473)
.++.|.|+||+|||||...|+..+.
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4889999999999999999985443
No 452
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=90.39 E-value=0.16 Score=47.88 Aligned_cols=26 Identities=15% Similarity=0.298 Sum_probs=21.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..++.|+|.|.+|+||||+...|...
T Consensus 19 ~~~l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 19 ESTRRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp -CEEEEEEESSTTSSHHHHHHHHHTS
T ss_pred CCceEEEEECCCCCcHHHHHHHHhCC
Confidence 34678999999999999999988643
No 453
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=90.36 E-value=0.11 Score=44.92 Aligned_cols=23 Identities=22% Similarity=0.456 Sum_probs=10.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|+|.|.+|+|||||...|..
T Consensus 8 ~~ki~v~G~~~~GKssl~~~l~~ 30 (183)
T 2fu5_C 8 LFKLLLIGDSGVGKTCVLFRFSE 30 (183)
T ss_dssp EEEEEEECCCCC-----------
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 46799999999999999988763
No 454
>3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A*
Probab=90.32 E-value=0.15 Score=45.19 Aligned_cols=25 Identities=28% Similarity=0.319 Sum_probs=20.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+...|+|.|.+|+|||||...|...
T Consensus 19 ~~~ki~~vG~~~vGKTsLi~~l~~~ 43 (196)
T 3llu_A 19 SKPRILLMGLRRSGKSSIQKVVFHK 43 (196)
T ss_dssp -CCEEEEEESTTSSHHHHHHHHHSC
T ss_pred cceEEEEECCCCCCHHHHHHHHHhc
Confidence 4468999999999999999877553
No 455
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.32 E-value=0.18 Score=45.01 Aligned_cols=24 Identities=25% Similarity=0.394 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+.|+|.|.+|+|||||...|...
T Consensus 25 ~~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 25 LIKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHCS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999998753
No 456
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.27 E-value=0.16 Score=46.75 Aligned_cols=27 Identities=22% Similarity=0.256 Sum_probs=23.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhcCC
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRLNL 186 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~Lg~ 186 (473)
|-+.+|.|++|+||||+...|.-.|+.
T Consensus 23 ~~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 23 EGINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 568999999999999999998766643
No 457
>3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens}
Probab=89.70 E-value=0.054 Score=48.17 Aligned_cols=25 Identities=20% Similarity=0.356 Sum_probs=21.5
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.++..|+|.|.+|+|||||...|..
T Consensus 28 ~~~~ki~v~G~~~~GKSsli~~l~~ 52 (204)
T 3th5_A 28 GQAIKCVVVGDGAVGKTCLLISYTT 52 (204)
Confidence 4567899999999999999988753
No 458
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.16 E-value=0.17 Score=45.06 Aligned_cols=24 Identities=13% Similarity=0.351 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 25 ~~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 25 RKKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 457999999999999999998753
No 459
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.16 E-value=0.18 Score=44.96 Aligned_cols=25 Identities=16% Similarity=0.235 Sum_probs=21.3
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
....|+|.|.+|+|||||...|...
T Consensus 8 ~~~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 8 KFIKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHHS
T ss_pred ceEEEEEECCCCCCHHHHHHHHhcC
Confidence 3467999999999999999988753
No 460
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=90.15 E-value=0.15 Score=52.32 Aligned_cols=25 Identities=20% Similarity=0.340 Sum_probs=21.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|.||+||||++..+|...
T Consensus 200 G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 200 GSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3599999999999999999998654
No 461
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=90.14 E-value=0.19 Score=43.95 Aligned_cols=24 Identities=29% Similarity=0.415 Sum_probs=21.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 18 ~~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 18 MLKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHhcC
Confidence 358999999999999999999864
No 462
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=89.99 E-value=0.16 Score=54.51 Aligned_cols=39 Identities=21% Similarity=0.309 Sum_probs=27.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE------cchhHHHHHh
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPNVL------QTDMVYELLR 200 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi------~tD~ir~~Lr 200 (473)
+.+|.||||+|||+++..+...+ |.+.++ +.|.+.+.+.
T Consensus 207 ~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~ 254 (646)
T 4b3f_X 207 LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLA 254 (646)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHH
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHH
Confidence 67999999999998877766555 555433 3466665554
No 463
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.92 E-value=0.16 Score=53.35 Aligned_cols=21 Identities=33% Similarity=0.422 Sum_probs=18.9
Q ss_pred CeEEEEEcCCCCcHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQL 180 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~L 180 (473)
--+++|.|+||||||||+..+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 358999999999999999994
No 464
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=89.80 E-value=0.21 Score=44.64 Aligned_cols=24 Identities=21% Similarity=0.459 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 29 ~~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 29 LFKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEEECTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHhhC
Confidence 468999999999999999999753
No 465
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=89.80 E-value=0.17 Score=53.74 Aligned_cols=24 Identities=38% Similarity=0.491 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+-.+
T Consensus 48 e~~~LvG~NGaGKSTLlk~l~Gl~ 71 (538)
T 1yqt_A 48 MVVGIVGPNGTGKSTAVKILAGQL 71 (538)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 489999999999999999998654
No 466
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=89.75 E-value=0.17 Score=51.01 Aligned_cols=25 Identities=8% Similarity=0.299 Sum_probs=22.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|.||+||||++..+|..+
T Consensus 46 G~LiiIaG~pG~GKTt~al~ia~~~ 70 (338)
T 4a1f_A 46 GSLVIIGARPSMGKTSLMMNMVLSA 70 (338)
T ss_dssp TCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 3589999999999999999998764
No 467
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=89.73 E-value=0.26 Score=46.69 Aligned_cols=24 Identities=38% Similarity=0.501 Sum_probs=21.5
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
.+..|+++|.+|+|||||...|..
T Consensus 38 ~~~~I~vvG~~g~GKSSLin~l~~ 61 (270)
T 1h65_A 38 NSLTILVMGKGGVGKSSTVNSIIG 61 (270)
T ss_dssp CEEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEECCCCCCHHHHHHHHhC
Confidence 467899999999999999999874
No 468
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=89.72 E-value=0.21 Score=44.44 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHh
Q 011994 161 LVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..|+|.|.+|+|||||..+|...
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 57999999999999999998753
No 469
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=89.57 E-value=0.2 Score=51.86 Aligned_cols=26 Identities=27% Similarity=0.229 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
.+.++.|.|++|+||||+.+.|+..+
T Consensus 68 ~~~~valvG~nGaGKSTLln~L~Gl~ 93 (413)
T 1tq4_A 68 SVLNVAVTGETGSGKSSFINTLRGIG 93 (413)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHTCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHhCCC
Confidence 34689999999999999999998643
No 470
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=89.55 E-value=0.18 Score=52.94 Aligned_cols=24 Identities=21% Similarity=0.462 Sum_probs=21.5
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-+++|.|++|+|||||+..|+..+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998654
No 471
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=89.53 E-value=0.19 Score=50.98 Aligned_cols=26 Identities=19% Similarity=0.264 Sum_probs=22.4
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+..+++|+|+||+||||+|..++...
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~ 98 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQA 98 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHH
Confidence 34589999999999999999998754
No 472
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=89.45 E-value=0.31 Score=51.66 Aligned_cols=37 Identities=32% Similarity=0.467 Sum_probs=29.4
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
+.+.++++.|.+|+||||+|..||..+ |.+.++ .+|.
T Consensus 6 ~~~~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd~D~ 46 (589)
T 1ihu_A 6 NIPPYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVSTDP 46 (589)
T ss_dssp SCCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEECCT
T ss_pred CCCEEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 345789999999999999999998876 766543 5664
No 473
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=89.31 E-value=0.19 Score=52.16 Aligned_cols=25 Identities=20% Similarity=0.402 Sum_probs=22.3
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
--+++|+|.||+||||++..+|...
T Consensus 197 G~liiIaG~pG~GKTtlal~ia~~~ 221 (444)
T 3bgw_A 197 RNFVLIAARPSMGKTAFALKQAKNM 221 (444)
T ss_dssp SCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred CcEEEEEeCCCCChHHHHHHHHHHH
Confidence 3599999999999999999998765
No 474
>3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A*
Probab=89.22 E-value=0.28 Score=44.47 Aligned_cols=24 Identities=21% Similarity=0.361 Sum_probs=21.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
.+.|+|.|.+|+|||||...|...
T Consensus 27 ~~ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 27 RCKLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEEECcCCCCHHHHHHHHhcC
Confidence 468999999999999999998753
No 475
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=89.20 E-value=0.76 Score=57.75 Aligned_cols=61 Identities=11% Similarity=0.274 Sum_probs=38.9
Q ss_pred ccHHHHHHHHHHHHHhcCCChh--hHHHHHHHHHhhccCCCeEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 122 VSQSDLEANLFKLMERRGYGEE--YISRYRMMTRFHHQRVPLVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 122 I~~~eLe~~v~~lL~~~~yge~--~a~rY~l~~~~~~~~~P~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
....+|++.+.+.+.+.++... ...+..-+.+....+ .-||+.|++||||||+.+.|+..+
T Consensus 885 ~~~~~l~~~i~~~~~~~~l~~~~~~~~K~~ql~e~~~~r--~gvmlvGptgsGKTt~~~~La~al 947 (2695)
T 4akg_A 885 LNSKAIVQCLKDAGQRSGFSMSEEFLKKCMQFYYMQKTQ--QALILVGKAGCGKTATWKTVIDAM 947 (2695)
T ss_dssp SSSSHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHC--SEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHHhc--ceEEEECCCCCCHHHHHHHHHHHH
Confidence 4556788888888777665422 111111111111223 248999999999999999999875
No 476
>3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A
Probab=89.18 E-value=0.19 Score=47.84 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|++.|.+|+|||||...|..
T Consensus 5 ~~kI~lvG~~nvGKTsL~n~l~g 27 (258)
T 3a1s_A 5 MVKVALAGCPNVGKTSLFNALTG 27 (258)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHC
Confidence 46799999999999999999964
No 477
>4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi}
Probab=89.16 E-value=0.098 Score=46.85 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=20.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHH
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...+.|+|.|.+|+|||||...|..
T Consensus 9 ~~~~ki~vvG~~~~GKSsli~~l~~ 33 (218)
T 4djt_A 9 ELTYKICLIGDGGVGKTTYINRVLD 33 (218)
T ss_dssp -CEEEEEEECCTTSSHHHHHCBCTT
T ss_pred cCccEEEEECCCCCCHHHHHHHHhc
Confidence 3457899999999999999988763
No 478
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=89.15 E-value=0.13 Score=45.99 Aligned_cols=24 Identities=29% Similarity=0.326 Sum_probs=20.7
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 29 ~~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 29 QPEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp SCEEEEEESCHHHHHHHHHHHTTC
T ss_pred CCEEEEEcCCCCCHHHHHHHHhCC
Confidence 457899999999999999998654
No 479
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=89.13 E-value=0.21 Score=48.85 Aligned_cols=23 Identities=30% Similarity=0.511 Sum_probs=20.2
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
..-|+|.|++|+|||||...|..
T Consensus 18 ~~~I~lvG~nG~GKSTLl~~L~g 40 (301)
T 2qnr_A 18 EFTLMVVGESGLGKSTLINSLFL 40 (301)
T ss_dssp CEEEEEEEETTSSHHHHHHHHHC
T ss_pred CEEEEEECCCCCCHHHHHHHHhC
Confidence 46789999999999999999864
No 480
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=89.12 E-value=0.2 Score=50.86 Aligned_cols=23 Identities=13% Similarity=0.255 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
+++|+|+||+|||||+..++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~ 52 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSY 52 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 78999999999999998887544
No 481
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=89.12 E-value=0.36 Score=47.67 Aligned_cols=37 Identities=32% Similarity=0.342 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE-cchh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQRL---NLPNVL-QTDM 194 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi-~tD~ 194 (473)
....++++.|-.|+||||+|..||..+ |.++++ .+|.
T Consensus 17 ~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD~D~ 57 (329)
T 2woo_A 17 TSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLISTDP 57 (329)
T ss_dssp TTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEECCT
T ss_pred CCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 345688999999999999999999776 666544 4554
No 482
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=89.09 E-value=0.27 Score=44.52 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 13 ~~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 13 LFKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEEESCTTSSHHHHHHHHHHC
T ss_pred eeEEEEECcCCCCHHHHHHHHhcC
Confidence 467999999999999999999753
No 483
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=89.03 E-value=0.19 Score=52.47 Aligned_cols=21 Identities=38% Similarity=0.536 Sum_probs=19.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHh
Q 011994 163 ILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 163 IlI~G~~GsGKSTlA~~LA~~ 183 (473)
+.|.|++|+|||||...|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 999999999999999999754
No 484
>3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A*
Probab=88.92 E-value=0.26 Score=47.58 Aligned_cols=24 Identities=17% Similarity=0.248 Sum_probs=21.1
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|.|.|.||+|||||...|...
T Consensus 3 ~~kI~lvG~~nvGKSTL~n~L~g~ 26 (272)
T 3b1v_A 3 MTEIALIGNPNSGKTSLFNLITGH 26 (272)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHCC
T ss_pred ceEEEEECCCCCCHHHHHHHHHCC
Confidence 457999999999999999999753
No 485
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=88.92 E-value=0.33 Score=54.08 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=22.8
Q ss_pred CCCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 158 RVPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 158 ~~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+.+|.|.|+.|+||||||..++.+
T Consensus 145 ~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 145 GEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp TSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 45679999999999999999988765
No 486
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=88.88 E-value=0.38 Score=45.83 Aligned_cols=31 Identities=19% Similarity=0.372 Sum_probs=26.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 160 PLVILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
-.+.+++|+.|+||||.+..++.++ |...++
T Consensus 28 G~l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli 61 (214)
T 2j9r_A 28 GWIEVICGSMFSGKSEELIRRVRRTQFAKQHAIV 61 (214)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CEEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEE
Confidence 4699999999999999999999887 666555
No 487
>3geh_A MNME, tRNA modification GTPase MNME; G protein, U34, GTP-binding, HYDR magnesium, metal-binding, nucleotide-binding, potassium, TR processing; HET: GDP FON; 3.20A {Nostoc SP}
Probab=88.86 E-value=0.5 Score=49.39 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 159 VPLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
..+.|.|+|.+|+|||||...|...
T Consensus 223 ~~~kV~ivG~~nvGKSSLln~L~~~ 247 (462)
T 3geh_A 223 TGLKVAIVGRPNVGKSSLLNAWSQS 247 (462)
T ss_dssp HCEEEEEEECTTSSHHHHHHHHHHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhCC
Confidence 3567999999999999999999865
No 488
>1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X
Probab=88.83 E-value=0.2 Score=48.85 Aligned_cols=23 Identities=35% Similarity=0.388 Sum_probs=20.5
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHH
Q 011994 160 PLVILVCGTACVGKSTIATQLAQ 182 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~ 182 (473)
...|.|.|+||+|||||...|..
T Consensus 8 ~~~VaIvG~~nvGKSTLln~L~g 30 (301)
T 1ega_A 8 CGFIAIVGRPNVGKSTLLNKLLG 30 (301)
T ss_dssp EEEEEEECSSSSSHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHC
Confidence 34799999999999999999974
No 489
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=88.80 E-value=0.25 Score=49.67 Aligned_cols=34 Identities=24% Similarity=0.421 Sum_probs=27.6
Q ss_pred HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHH
Q 011994 409 DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGY 450 (473)
Q Consensus 409 ~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ 450 (473)
+..+...+.|++||. |+.. ...++.+|++.|...
T Consensus 312 ~~~~~~~~~~~~fl~----Q~~~----~~~~~~~~~~~~~~~ 345 (347)
T 2obl_A 312 DKAIKNRKLIQNFIQ----QSTK----DISSYEKTIESLFKV 345 (347)
T ss_dssp HHHHHTHHHHHHHHC----CCTT----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC----CCCC----CCCCHHHHHHHHHHH
Confidence 688999999999999 5553 567889999988764
No 490
>2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C
Probab=88.76 E-value=0.099 Score=45.85 Aligned_cols=24 Identities=29% Similarity=0.468 Sum_probs=5.6
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
+..|+|.|.+|+|||||...|...
T Consensus 20 ~~~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 20 RCKVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEEEC-----------------
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 358999999999999999988643
No 491
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=88.71 E-value=0.47 Score=46.31 Aligned_cols=33 Identities=15% Similarity=0.325 Sum_probs=25.5
Q ss_pred CCCeEEEEEcC-CCCcHHHHHHHHHHhc---CCCeEE
Q 011994 158 RVPLVILVCGT-ACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 158 ~~P~iIlI~G~-~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
..+.+|+|+|+ +|+||||+|..||..+ |.++++
T Consensus 102 ~~~kvI~vts~kgG~GKTtva~nLA~~lA~~G~rVLL 138 (299)
T 3cio_A 102 TENNILMITGATPDSGKTFVSSTLAAVIAQSDQKVLF 138 (299)
T ss_dssp CSCCEEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCCeEEEEECCCCCCChHHHHHHHHHHHHhCCCcEEE
Confidence 34567888876 8999999999998876 666554
No 492
>3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae}
Probab=88.65 E-value=0.22 Score=52.94 Aligned_cols=24 Identities=29% Similarity=0.374 Sum_probs=21.6
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++||||||+.+.|+.-+
T Consensus 370 ~~~~ivG~sGsGKSTll~~l~g~~ 393 (582)
T 3b5x_A 370 KTVALVGRSGSGKSTIANLFTRFY 393 (582)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 489999999999999999998755
No 493
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=88.65 E-value=0.23 Score=52.72 Aligned_cols=24 Identities=33% Similarity=0.354 Sum_probs=21.0
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++|||||||.+.|+..+
T Consensus 313 e~~~i~G~NGsGKSTLlk~l~Gl~ 336 (538)
T 1yqt_A 313 EVIGIVGPNGIGKTTFVKMLAGVE 336 (538)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 377899999999999999998654
No 494
>3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A*
Probab=88.64 E-value=0.23 Score=52.52 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.7
Q ss_pred eEEEEEcCCCCcHHHHHHHHHHhc
Q 011994 161 LVILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 161 ~iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
-++.|.|++||||||+.+.|+.-+
T Consensus 30 e~~~liG~nGsGKSTLl~~l~Gl~ 53 (483)
T 3euj_A 30 LVTTLSGGNGAGKSTTMAGFVTAL 53 (483)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEECCCCCcHHHHHHHHhcCC
Confidence 589999999999999999998755
No 495
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=88.55 E-value=0.26 Score=51.16 Aligned_cols=34 Identities=18% Similarity=0.328 Sum_probs=28.0
Q ss_pred HHHHhhHHHHHHHHhhhccCCceEeeecCCCccchHHHHHHH
Q 011994 409 DELVSKLKTIQNYLCSFKSQGVTVVNVSATTFPQTLDWLHGY 450 (473)
Q Consensus 409 ~~~i~nl~~IQ~yLc~~~~q~~~vv~i~~~~~~~tld~lH~~ 450 (473)
+..+...+.|++||. |++. ...++.+|++.|...
T Consensus 401 ~~~i~~~~~~~~fl~----Q~~~----~~~~~~~~~~~~~~~ 434 (438)
T 2dpy_A 401 DKAITLWPQLEAFLQ----QGIF----ERADWEDSLQALDLI 434 (438)
T ss_dssp HHHHTTHHHHHHHHC----CCTT----CCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC----CCCC----CCCCHHHHHHHHHHH
Confidence 588999999999999 6653 667889999998764
No 496
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=88.53 E-value=0.28 Score=46.93 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=21.0
Q ss_pred CeEEEEEcCCCCcHHHHHHHHHHh
Q 011994 160 PLVILVCGTACVGKSTIATQLAQR 183 (473)
Q Consensus 160 P~iIlI~G~~GsGKSTlA~~LA~~ 183 (473)
...|+|.|.+|+|||||...|...
T Consensus 3 ~~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 3 KLTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHTT
T ss_pred ccEEEEECCCCCCHHHHHHHHhCC
Confidence 467999999999999999999654
No 497
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=88.52 E-value=0.2 Score=53.30 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc
Q 011994 162 VILVCGTACVGKSTIATQLAQRL 184 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L 184 (473)
++.|.|++|||||||.+.|+..+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68899999999999999998654
No 498
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=88.47 E-value=0.39 Score=44.73 Aligned_cols=29 Identities=24% Similarity=0.384 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 162 VILVCGTACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 162 iIlI~G~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
+|.|.|-.|+||||+|..||..| |.++++
T Consensus 3 vI~vs~KGGvGKTT~a~nLA~~la~~G~~Vll 34 (269)
T 1cp2_A 3 QVAIYGKGGIGKSTTTQNLTSGLHAMGKTIMV 34 (269)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred EEEEecCCCCcHHHHHHHHHHHHHHCCCcEEE
Confidence 56668999999999999999876 666544
No 499
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=88.40 E-value=0.42 Score=43.15 Aligned_cols=29 Identities=24% Similarity=0.233 Sum_probs=21.9
Q ss_pred EEEEEc-CCCCcHHHHHHHHHHhc---CCCeEE
Q 011994 162 VILVCG-TACVGKSTIATQLAQRL---NLPNVL 190 (473)
Q Consensus 162 iIlI~G-~~GsGKSTlA~~LA~~L---g~~~Vi 190 (473)
+|+|+| -+|+||||++..||..| |.++.+
T Consensus 3 ~I~v~s~kgGvGKTt~a~nLa~~la~~G~rVll 35 (224)
T 1byi_A 3 RYFVTGTDTEVGKTVASCALLQAAKAAGYRTAG 35 (224)
T ss_dssp EEEEEESSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEE
Confidence 455665 48999999999999766 666543
No 500
>3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ...
Probab=88.20 E-value=0.17 Score=45.58 Aligned_cols=23 Identities=22% Similarity=0.413 Sum_probs=19.7
Q ss_pred CCeEEEEEcCCCCcHHHHHHHHH
Q 011994 159 VPLVILVCGTACVGKSTIATQLA 181 (473)
Q Consensus 159 ~P~iIlI~G~~GsGKSTlA~~LA 181 (473)
..+.|+|.|.+|+|||||...|.
T Consensus 14 ~~~ki~v~G~~~~GKSsli~~~~ 36 (221)
T 3gj0_A 14 VQFKLVLVGDGGTGKTTFVKRHL 36 (221)
T ss_dssp CEEEEEEEECTTSSHHHHHTTBH
T ss_pred cceEEEEECCCCCCHHHHHHHHH
Confidence 34689999999999999999843
Done!