BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011998
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2ZW9|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZW9|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZWA|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|A Chain A, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
pdb|2ZZK|B Chain B, Crystal Structure Of Trna Wybutosine Synthesizing Enzyme
Tyw4
Length = 695
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 45/192 (23%), Positives = 75/192 (39%), Gaps = 22/192 (11%)
Query: 25 EGPEAREGHSAALVGKRLFIFGGCGKSSNTND----EVYYNDLYILNTETFVWKRATTSG 80
E P R+ + G +F GG N+ ++Y+ + + N E +S
Sbjct: 383 ECPINRKFGDVDVAGNDVFYMGG-SNPYRVNEILQLSIHYDKIDMKNIEV-------SSS 434
Query: 81 NPPSARDSHTCS--SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138
P AR HT + S N++++IGG LSD I D T W + + + R
Sbjct: 435 EVPVARMCHTFTTISRNNQLLLIGGRKAPHQGLSDNWIFDMKTREWSMIKS---LSHTRF 491
Query: 139 GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 197
HS + N+ + GG T+ + + +V ++ V E AG D
Sbjct: 492 RHSACSLPDGNVLILGGVTEGPA----MLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFD 547
Query: 198 PLKGGVLVFIGG 209
P+ ++ GG
Sbjct: 548 PVSKQGIILGGG 559
>pdb|2WOZ|A Chain A, The Novel Beta-Propeller Of The Btb-Kelch Protein Krp1
Provides The Binding Site For Lasp-1 That Is Necessary
For Pseudopodia Extension
Length = 318
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 23/186 (12%)
Query: 41 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP--SARDSHTCSSWKNKI 98
++++ GG D+ + + L+ + W G PP SAR +KI
Sbjct: 58 QVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEW-----VGLPPLPSARCLFGLGEVDDKI 112
Query: 99 IVIGGEDGH-DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD 157
V+ G+D + L V D W E+ + + GH+ ++ ++ GG TD
Sbjct: 113 YVVAGKDLQTEASLDSVLCYDPVAAKWSEVKNLPIKVY---GHNVISHNGMIYCLGGKTD 169
Query: 158 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK----- 212
+ + +++ + G W K + + P + F VA + G +V GG +
Sbjct: 170 DKKCTNRVFIYNPKKGDW-KDLAPMKTPRSMFGVA------IHKGKIVIAGGVTEDGLSA 222
Query: 213 SLEALD 218
S+EA D
Sbjct: 223 SVEAFD 228
>pdb|2UVK|A Chain A, Structure Of Yjht
pdb|2UVK|B Chain B, Structure Of Yjht
Length = 357
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/124 (25%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 10 LDTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILN 67
LDT + W + + GP R+ ++A + L++FGG GK+S +V +ND++ N
Sbjct: 36 LDTQAKDKKWTALAAFPGGP--RDQATSAFIDGNLYVFGGIGKNSEGLTQV-FNDVHKYN 92
Query: 68 TETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDY--YLSDVHILDTDTLTWK 125
+T W + + + P H K V GG + + + Y D++ D+
Sbjct: 93 PKTNSWVKLXS--HAPXGXAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAID 150
Query: 126 ELNT 129
++N
Sbjct: 151 KINA 154
>pdb|3II7|A Chain A, Crystal Structure Of The Kelch Domain Of Human Klhl7
Length = 306
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 3/73 (4%)
Query: 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 141
PP+ RDS + + KI GG + + L DT T +W +T +L+ R H
Sbjct: 88 PPTPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESW---HTKPSMLTQRCSHG 144
Query: 142 TVAFGKNLFVFGG 154
V ++V GG
Sbjct: 145 MVEANGLIYVCGG 157
>pdb|1ZGK|A Chain A, 1.35 Angstrom Structure Of The Kelch Domain Of Keap1
Length = 308
Score = 31.6 bits (70), Expect = 0.88, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 127
+ +I V+GG DGH +L V D DT TW E+
Sbjct: 262 QGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEV 293
>pdb|3VNG|A Chain A, Crystal Structure Of Keap1 In Complex With Synthetic Small
Molecular Based On A Co-crystallization
pdb|3VNH|A Chain A, Crystal Structure Of Keap1 Soaked With Synthetic Small
Molecular
Length = 309
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 127
+ +I V+GG DGH +L V D DT TW E+
Sbjct: 263 QGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEV 294
>pdb|1U6D|X Chain X, Crystal Structure Of The Kelch Domain Of Human Keap1
pdb|2FLU|X Chain X, Crystal Structure Of The Kelch-Neh2 Complex
Length = 308
Score = 31.6 bits (70), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 127
+ +I V+GG DGH +L V D DT TW E+
Sbjct: 262 QGRIYVLGGYDGHT-FLDSVECYDPDTDTWSEV 293
>pdb|2DYH|A Chain A, Crystal Structure Of The Keap1 Protein In Complexed With
The N-Terminal Region Of The Nrf2 Transcription Factor
pdb|2Z32|A Chain A, Crystal Structure Of Keap1 Complexed With Prothymosin
Alpha
pdb|3ADE|A Chain A, Crystal Structure Of Keap1 In Complex With Sequestosome-
1P62
Length = 318
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN--TSG 131
+ KI V+GG DGH +L V D D+ TW E+ TSG
Sbjct: 256 QGKIYVLGGYDGHT-FLDSVECYDPDSDTWSEVTRMTSG 293
>pdb|1X2J|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
pdb|1X2R|A Chain A, Structural Basis For The Defects Of Human Lung Cancer
Somatic Mutations In The Repression Activity Of Keap1 On
Nrf2
Length = 316
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/39 (46%), Positives = 23/39 (58%), Gaps = 3/39 (7%)
Query: 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN--TSG 131
+ KI V+GG DGH +L V D D+ TW E+ TSG
Sbjct: 255 QGKIYVLGGYDGHT-FLDSVECYDPDSDTWSEVTRMTSG 292
>pdb|4GKB|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GKB|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans,
Unliganded Structure
pdb|4GLO|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GLO|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nad
pdb|4GVX|A Chain A, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|B Chain B, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|C Chain C, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
pdb|4GVX|D Chain D, Crystal Structure Of A Short Chain Dehydrogenase Homolog
(Target Efi- 505321) From Burkholderia Multivorans, With
Bound Nadp And L-Fucose
Length = 258
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 21/29 (72%), Gaps = 3/29 (10%)
Query: 128 NTSGMVLSPRAGHSTVAFGKNLFVFGGFT 156
+T+ +LSPRA H+T G+ LFV GG+T
Sbjct: 226 DTAVFLLSPRASHTT---GEWLFVDGGYT 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.133 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,136,366
Number of Sequences: 62578
Number of extensions: 655962
Number of successful extensions: 953
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 941
Number of HSP's gapped (non-prelim): 20
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 53 (25.0 bits)