Query 011998
Match_columns 473
No_of_seqs 321 out of 2335
Neff 7.5
Searched_HMMs 46136
Date Fri Mar 29 07:32:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011998.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011998hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02193 nitrile-specifier pro 100.0 1.3E-33 2.8E-38 299.4 31.4 267 4-298 192-467 (470)
2 PLN02153 epithiospecifier prot 100.0 3.8E-33 8.2E-38 284.4 32.0 266 4-298 49-338 (341)
3 KOG4693 Uncharacterized conser 100.0 4.6E-34 1E-38 268.3 18.7 249 6-282 45-313 (392)
4 PLN02193 nitrile-specifier pro 100.0 5.9E-32 1.3E-36 286.7 32.1 248 4-282 134-388 (470)
5 PLN02153 epithiospecifier prot 100.0 1.2E-31 2.5E-36 273.4 26.6 222 3-226 99-339 (341)
6 KOG4693 Uncharacterized conser 100.0 1.7E-32 3.6E-37 257.8 14.8 203 2-212 102-313 (392)
7 KOG0379 Kelch repeat-containin 100.0 2.8E-31 6.1E-36 281.6 24.8 223 6-237 89-312 (482)
8 KOG1230 Protein containing rep 100.0 4.8E-32 1E-36 267.6 17.0 226 3-233 96-347 (521)
9 PHA02713 hypothetical protein; 100.0 8.7E-31 1.9E-35 282.8 27.4 211 5-237 272-500 (557)
10 KOG4441 Proteins containing BT 100.0 1E-30 2.3E-35 281.7 25.5 211 2-235 298-508 (571)
11 KOG0379 Kelch repeat-containin 100.0 1E-30 2.3E-35 277.2 24.9 233 22-282 53-286 (482)
12 TIGR03548 mutarot_permut cycli 100.0 7E-29 1.5E-33 251.1 27.8 240 4-282 38-314 (323)
13 PHA02713 hypothetical protein; 100.0 1.1E-29 2.5E-34 274.1 22.4 205 3-233 318-540 (557)
14 PHA03098 kelch-like protein; P 100.0 2.8E-29 6.1E-34 270.6 25.4 210 3-235 309-520 (534)
15 KOG4441 Proteins containing BT 100.0 2.4E-29 5.2E-34 271.1 22.7 210 2-235 346-555 (571)
16 TIGR03547 muta_rot_YjhT mutatr 100.0 3.8E-28 8.3E-33 247.9 27.3 219 5-235 29-307 (346)
17 KOG1230 Protein containing rep 100.0 9.3E-29 2E-33 244.4 19.1 239 24-282 61-318 (521)
18 PHA03098 kelch-like protein; P 100.0 5.9E-28 1.3E-32 260.4 25.8 206 7-235 266-473 (534)
19 PHA02790 Kelch-like protein; P 100.0 2.1E-27 4.5E-32 252.7 25.1 193 3-233 285-477 (480)
20 KOG4152 Host cell transcriptio 100.0 2.7E-28 5.9E-33 245.8 15.5 268 4-297 56-361 (830)
21 PRK14131 N-acetylneuraminic ac 100.0 2.3E-26 5.1E-31 237.5 27.4 215 5-234 50-328 (376)
22 TIGR03548 mutarot_permut cycli 99.9 1.2E-25 2.7E-30 227.4 26.1 192 28-235 2-203 (323)
23 TIGR03547 muta_rot_YjhT mutatr 99.9 5E-26 1.1E-30 232.3 23.2 207 3-224 83-344 (346)
24 PRK14131 N-acetylneuraminic ac 99.9 2.2E-25 4.7E-30 230.3 22.8 212 3-229 104-371 (376)
25 KOG4152 Host cell transcriptio 99.9 8.6E-26 1.9E-30 227.8 15.9 238 15-280 17-273 (830)
26 PHA02790 Kelch-like protein; P 99.9 1.2E-23 2.6E-28 223.9 26.0 190 35-281 267-456 (480)
27 COG3055 Uncharacterized protei 99.6 9.1E-15 2E-19 143.9 18.6 249 6-286 59-364 (381)
28 KOG2437 Muskelin [Signal trans 99.6 4.4E-16 9.5E-21 157.8 5.4 283 13-308 237-561 (723)
29 KOG2437 Muskelin [Signal trans 99.5 4.4E-14 9.4E-19 143.5 6.0 161 70-233 238-419 (723)
30 COG3055 Uncharacterized protei 99.4 2.5E-12 5.4E-17 126.9 15.8 193 22-234 29-263 (381)
31 PF13964 Kelch_6: Kelch motif 99.1 1.1E-10 2.4E-15 85.0 6.3 50 85-137 1-50 (50)
32 PF13964 Kelch_6: Kelch motif 99.0 6E-10 1.3E-14 81.1 6.1 50 29-86 1-50 (50)
33 PLN02772 guanylate kinase 98.9 8.4E-09 1.8E-13 105.5 12.4 92 132-229 20-111 (398)
34 PLN02772 guanylate kinase 98.9 8.9E-09 1.9E-13 105.3 11.1 88 83-173 22-110 (398)
35 PF13415 Kelch_3: Galactose ox 98.9 3.8E-09 8.2E-14 76.6 6.0 48 95-145 1-49 (49)
36 PF13415 Kelch_3: Galactose ox 98.9 5.6E-09 1.2E-13 75.7 6.7 49 39-94 1-49 (49)
37 PF01344 Kelch_1: Kelch motif; 98.9 4.1E-09 8.8E-14 75.4 5.1 45 85-129 1-45 (47)
38 PF13418 Kelch_4: Galactose ox 98.8 3E-09 6.4E-14 77.0 3.9 45 85-129 1-46 (49)
39 PF07646 Kelch_2: Kelch motif; 98.8 8.7E-09 1.9E-13 74.7 6.2 45 85-129 1-47 (49)
40 PF07646 Kelch_2: Kelch motif; 98.8 1.6E-08 3.6E-13 73.2 6.4 48 29-79 1-48 (49)
41 PF13418 Kelch_4: Galactose ox 98.7 1.5E-08 3.2E-13 73.3 5.1 45 29-78 1-46 (49)
42 PF03089 RAG2: Recombination a 98.7 2.4E-06 5.1E-11 82.6 20.7 179 26-214 19-232 (337)
43 PF01344 Kelch_1: Kelch motif; 98.7 4.1E-08 8.8E-13 70.2 6.1 46 136-181 1-46 (47)
44 PF13854 Kelch_5: Kelch motif 98.6 8.5E-08 1.9E-12 67.1 5.7 41 82-122 1-42 (42)
45 PF13854 Kelch_5: Kelch motif 98.5 2.1E-07 4.5E-12 65.2 5.4 40 133-172 1-41 (42)
46 smart00612 Kelch Kelch domain. 98.4 3.1E-07 6.6E-12 65.0 4.9 47 97-147 1-47 (47)
47 smart00612 Kelch Kelch domain. 98.3 1.3E-06 2.8E-11 61.7 4.8 47 41-96 1-47 (47)
48 PF07250 Glyoxal_oxid_N: Glyox 98.2 3.1E-05 6.6E-10 75.1 14.2 147 7-181 48-208 (243)
49 PF07250 Glyoxal_oxid_N: Glyox 98.1 0.0002 4.3E-09 69.5 17.7 148 62-236 47-208 (243)
50 PF03089 RAG2: Recombination a 97.9 0.00033 7.2E-09 68.0 15.4 125 97-226 40-190 (337)
51 TIGR01640 F_box_assoc_1 F-box 97.7 0.01 2.2E-07 57.0 20.9 159 5-181 14-187 (230)
52 TIGR01640 F_box_assoc_1 F-box 97.5 0.011 2.3E-07 56.8 18.4 167 61-238 14-189 (230)
53 PF12768 Rax2: Cortical protei 96.1 0.48 1E-05 47.2 17.9 122 100-235 2-130 (281)
54 PF07893 DUF1668: Protein of u 96.0 0.71 1.5E-05 47.3 18.9 113 5-129 86-216 (342)
55 PF12768 Rax2: Cortical protei 95.6 0.63 1.4E-05 46.3 16.2 113 59-180 14-130 (281)
56 PF07893 DUF1668: Protein of u 95.4 0.43 9.3E-06 48.9 14.8 118 38-179 75-215 (342)
57 PF13360 PQQ_2: PQQ-like domai 93.8 5.9 0.00013 37.2 20.9 170 5-229 46-233 (238)
58 TIGR02800 propeller_TolB tol-p 93.3 8 0.00017 40.0 19.1 147 5-180 214-363 (417)
59 PRK05137 tolB translocation pr 92.7 15 0.00033 38.6 21.2 148 5-179 226-374 (435)
60 PF08450 SGL: SMP-30/Gluconola 92.0 12 0.00026 35.8 24.1 184 5-227 22-214 (246)
61 PRK00178 tolB translocation pr 91.8 18 0.00039 37.8 19.4 147 5-180 223-372 (430)
62 PF08268 FBA_3: F-box associat 91.6 5.6 0.00012 34.3 12.9 86 93-180 3-89 (129)
63 PRK04792 tolB translocation pr 91.1 23 0.00051 37.6 21.1 148 5-180 242-391 (448)
64 PRK04792 tolB translocation pr 90.8 25 0.00054 37.3 20.8 144 61-230 242-386 (448)
65 cd00094 HX Hemopexin-like repe 90.0 16 0.00035 34.0 17.4 151 34-228 11-177 (194)
66 PRK11138 outer membrane biogen 89.4 24 0.00051 36.6 17.6 113 34-178 64-187 (394)
67 KOG2055 WD40 repeat protein [G 88.3 9 0.00019 40.2 12.8 110 39-175 268-378 (514)
68 PRK03629 tolB translocation pr 88.0 38 0.00083 35.7 19.6 104 61-180 267-372 (429)
69 PF13360 PQQ_2: PQQ-like domai 87.9 24 0.00051 33.1 26.7 137 5-179 3-150 (238)
70 PRK04043 tolB translocation pr 87.4 42 0.00091 35.4 20.9 149 5-181 213-367 (419)
71 PF08268 FBA_3: F-box associat 87.2 7.3 0.00016 33.6 10.2 86 37-129 3-89 (129)
72 PRK04922 tolB translocation pr 86.9 44 0.00095 35.1 21.1 146 5-180 228-377 (433)
73 cd00094 HX Hemopexin-like repe 86.8 26 0.00057 32.5 14.8 106 40-174 63-178 (194)
74 TIGR02800 propeller_TolB tol-p 86.2 44 0.00096 34.4 22.9 142 61-229 214-357 (417)
75 TIGR03300 assembly_YfgL outer 86.1 41 0.00089 34.3 16.8 108 33-178 59-172 (377)
76 PF05096 Glu_cyclase_2: Glutam 86.1 24 0.00051 34.8 13.9 107 38-174 54-160 (264)
77 PRK11138 outer membrane biogen 85.9 35 0.00075 35.3 16.2 140 5-177 79-231 (394)
78 KOG2055 WD40 repeat protein [G 84.7 11 0.00025 39.5 11.4 99 6-125 281-379 (514)
79 PF08450 SGL: SMP-30/Gluconola 84.2 39 0.00085 32.2 17.4 154 6-180 61-222 (246)
80 PF02897 Peptidase_S9_N: Proly 81.8 69 0.0015 33.2 18.0 197 5-226 150-357 (414)
81 TIGR03300 assembly_YfgL outer 81.3 67 0.0015 32.8 18.6 130 62-228 156-299 (377)
82 PF09910 DUF2139: Uncharacteri 80.5 67 0.0015 32.3 15.0 105 59-175 76-185 (339)
83 PRK02889 tolB translocation pr 79.2 88 0.0019 32.8 18.7 147 5-180 220-369 (427)
84 KOG2048 WD40 repeat protein [G 78.7 83 0.0018 34.8 15.6 158 34-228 388-550 (691)
85 PRK00178 tolB translocation pr 77.9 93 0.002 32.4 20.2 143 61-231 223-368 (430)
86 PRK05137 tolB translocation pr 77.6 98 0.0021 32.5 20.3 106 61-180 226-331 (435)
87 PRK04922 tolB translocation pr 77.5 99 0.0021 32.5 20.0 143 61-229 228-371 (433)
88 PF02897 Peptidase_S9_N: Proly 77.0 96 0.0021 32.1 20.6 149 60-231 251-409 (414)
89 PRK01742 tolB translocation pr 75.1 1.1E+02 0.0025 32.0 17.2 119 62-211 273-392 (429)
90 PF03178 CPSF_A: CPSF A subuni 72.8 64 0.0014 32.3 12.7 119 5-152 62-189 (321)
91 PRK02889 tolB translocation pr 72.4 1.3E+02 0.0028 31.5 19.9 105 61-180 220-325 (427)
92 PF05096 Glu_cyclase_2: Glutam 67.5 50 0.0011 32.6 10.0 93 5-123 68-160 (264)
93 PRK13684 Ycf48-like protein; P 66.6 1.5E+02 0.0033 30.0 16.4 154 14-210 161-322 (334)
94 TIGR03075 PQQ_enz_alc_DH PQQ-d 65.6 1.3E+02 0.0028 32.8 13.9 123 34-178 64-198 (527)
95 PRK04043 tolB translocation pr 65.5 1.8E+02 0.004 30.5 19.7 147 61-232 213-363 (419)
96 cd00216 PQQ_DH Dehydrogenases 65.2 2E+02 0.0043 30.8 21.3 110 5-127 71-192 (488)
97 PF10282 Lactonase: Lactonase, 64.5 1.7E+02 0.0036 29.7 14.0 148 4-180 165-333 (345)
98 PF12217 End_beta_propel: Cata 62.0 1.7E+02 0.0037 28.9 16.4 186 13-212 113-335 (367)
99 KOG2321 WD40 repeat protein [G 56.3 1.1E+02 0.0025 33.3 10.8 120 27-174 131-261 (703)
100 PF03178 CPSF_A: CPSF A subuni 55.4 2.2E+02 0.0049 28.3 17.3 114 61-196 62-181 (321)
101 COG0823 TolB Periplasmic compo 52.8 3.1E+02 0.0066 29.1 14.2 106 61-181 262-369 (425)
102 TIGR03866 PQQ_ABC_repeats PQQ- 51.9 2.1E+02 0.0046 27.0 20.4 133 5-174 11-148 (300)
103 TIGR03075 PQQ_enz_alc_DH PQQ-d 50.5 3.7E+02 0.0079 29.3 24.3 109 4-127 78-198 (527)
104 KOG0649 WD40 repeat protein [G 50.4 2.6E+02 0.0056 27.5 16.7 67 39-127 126-193 (325)
105 PRK03629 tolB translocation pr 47.6 3.6E+02 0.0077 28.3 20.6 145 61-231 223-368 (429)
106 PF07734 FBA_1: F-box associat 47.1 2.1E+02 0.0046 25.5 12.3 91 143-240 2-97 (164)
107 KOG0310 Conserved WD40 repeat- 47.1 3.7E+02 0.0081 28.7 12.7 194 88-363 72-267 (487)
108 PF14870 PSII_BNR: Photosynthe 47.0 3.2E+02 0.0069 27.5 16.7 136 13-180 4-141 (302)
109 PF15525 DUF4652: Domain of un 46.9 2.5E+02 0.0054 26.3 11.1 70 58-129 85-157 (200)
110 PF02191 OLF: Olfactomedin-lik 46.6 2.9E+02 0.0063 27.0 17.5 130 83-231 66-208 (250)
111 PRK13684 Ycf48-like protein; P 46.2 3.3E+02 0.0072 27.6 16.4 121 63-209 111-233 (334)
112 COG4257 Vgb Streptogramin lyas 43.2 2.8E+02 0.006 27.9 10.4 99 62-180 211-314 (353)
113 PF15525 DUF4652: Domain of un 42.1 1.9E+02 0.0041 27.1 8.7 76 104-181 80-158 (200)
114 PLN00033 photosystem II stabil 40.7 4.5E+02 0.0098 27.5 17.5 160 14-211 165-348 (398)
115 PLN03215 ascorbic acid mannose 40.2 4.5E+02 0.0098 27.4 14.0 99 70-181 189-304 (373)
116 PF02191 OLF: Olfactomedin-lik 38.7 3.8E+02 0.0083 26.1 17.5 162 27-207 66-236 (250)
117 cd00216 PQQ_DH Dehydrogenases 37.8 5.4E+02 0.012 27.5 17.8 67 5-75 120-191 (488)
118 PLN03215 ascorbic acid mannose 37.7 4.9E+02 0.011 27.1 14.5 98 14-129 189-303 (373)
119 PRK11028 6-phosphogluconolacto 34.8 4.6E+02 0.01 25.9 18.1 187 5-226 12-205 (330)
120 PF09826 Beta_propel: Beta pro 34.0 6.5E+02 0.014 27.4 14.5 139 59-210 246-389 (521)
121 cd00200 WD40 WD40 domain, foun 33.8 3.6E+02 0.0078 24.4 19.6 103 40-173 63-167 (289)
122 KOG0646 WD40 repeat protein [G 33.7 6.1E+02 0.013 27.0 13.5 59 32-107 84-146 (476)
123 COG4257 Vgb Streptogramin lyas 32.7 1.2E+02 0.0025 30.4 6.1 60 62-129 255-314 (353)
124 KOG2321 WD40 repeat protein [G 32.0 4E+02 0.0086 29.3 10.3 74 84-173 132-207 (703)
125 TIGR03866 PQQ_ABC_repeats PQQ- 31.5 4.5E+02 0.0096 24.7 21.2 136 5-175 53-191 (300)
126 PLN00033 photosystem II stabil 31.4 6.3E+02 0.014 26.5 23.6 92 15-127 120-214 (398)
127 PF14870 PSII_BNR: Photosynthe 30.8 5.7E+02 0.012 25.7 18.0 156 15-208 47-204 (302)
128 PRK10115 protease 2; Provision 29.3 8.7E+02 0.019 27.4 17.4 148 5-179 247-402 (686)
129 PF10282 Lactonase: Lactonase, 28.4 6.2E+02 0.014 25.5 16.3 126 32-180 146-286 (345)
130 PTZ00421 coronin; Provisional 27.8 8E+02 0.017 26.5 17.1 113 39-177 179-296 (493)
131 COG0823 TolB Periplasmic compo 26.4 3.4E+02 0.0073 28.7 8.9 106 4-129 261-368 (425)
132 PRK01742 tolB translocation pr 26.1 7.6E+02 0.017 25.7 20.0 103 61-178 228-331 (429)
133 PF13570 PQQ_3: PQQ-like domai 26.0 1.5E+02 0.0033 19.5 4.2 26 33-70 15-40 (40)
134 KOG2111 Uncharacterized conser 25.1 7.4E+02 0.016 25.2 10.5 58 95-152 58-118 (346)
135 cd00200 WD40 WD40 domain, foun 25.0 5.1E+02 0.011 23.3 19.9 93 61-174 115-210 (289)
136 COG3386 Gluconolactonase [Carb 24.4 7.4E+02 0.016 24.9 13.8 100 62-171 86-193 (307)
137 TIGR03074 PQQ_membr_DH membran 24.0 1.1E+03 0.025 27.0 15.7 32 33-76 188-221 (764)
138 KOG2048 WD40 repeat protein [G 23.9 1.1E+03 0.023 26.6 14.5 127 25-180 423-560 (691)
139 COG4880 Secreted protein conta 23.9 9.1E+02 0.02 25.8 13.2 57 2-71 403-459 (603)
140 PF09910 DUF2139: Uncharacteri 23.1 8E+02 0.017 24.9 17.4 129 2-152 75-219 (339)
141 KOG0316 Conserved WD40 repeat- 22.0 7.6E+02 0.017 24.2 11.3 90 61-174 81-176 (307)
No 1
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=1.3e-33 Score=299.38 Aligned_cols=267 Identities=24% Similarity=0.330 Sum_probs=210.5
Q ss_pred cCcEEEEECCCCeEEecccCCCCCC-cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~-~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.+++|+||+.+++|+.+...++.|. +|.+|++++++++||||||... ...++++|+||+.+++|+++.+++..
T Consensus 192 ~~~v~~yD~~~~~W~~~~~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~------~~~~ndv~~yD~~t~~W~~l~~~~~~ 265 (470)
T PLN02193 192 DKHLYVFDLETRTWSISPATGDVPHLSCLGVRMVSIGSTLYVFGGRDA------SRQYNGFYSFDTTTNEWKLLTPVEEG 265 (470)
T ss_pred eCcEEEEECCCCEEEeCCCCCCCCCCcccceEEEEECCEEEEECCCCC------CCCCccEEEEECCCCEEEEcCcCCCC
Confidence 3689999999999998765555565 4678999999999999999742 23578999999999999999887777
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
|.+|..|++++++++||||||.+... .++++++||+.+++|+.+++.+.+|.+|.+|++++++++|||+||... ..+
T Consensus 266 P~~R~~h~~~~~~~~iYv~GG~~~~~-~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g--~~~ 342 (470)
T PLN02193 266 PTPRSFHSMAADEENVYVFGGVSATA-RLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNG--CEV 342 (470)
T ss_pred CCCccceEEEEECCEEEEECCCCCCC-CcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEECCcEEEEECCCC--Ccc
Confidence 89999999999999999999997654 689999999999999999876678899999999999999999999743 347
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC--------CCCccCcEEEEEccccceeeee
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEALDDMYYLYTGLVNERKLE 234 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~--------~~~~~~dv~~ld~~~~~w~~~~ 234 (473)
+++++||+.+++|+++...+..|.+|..|+++.+ +++||||||... .....+|+|.||+.+.+|+.+.
T Consensus 343 ~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~ndv~~~D~~t~~W~~~~ 418 (470)
T PLN02193 343 DDVHYYDPVQDKWTQVETFGVRPSERSVFASAAV----GKHIVIFGGEIAMDPLAHVGPGQLTDGTFALDTETLQWERLD 418 (470)
T ss_pred CceEEEECCCCEEEEeccCCCCCCCcceeEEEEE----CCEEEEECCccCCccccccCccceeccEEEEEcCcCEEEEcc
Confidence 9999999999999999987778999999988876 789999999753 1246789999999999998765
Q ss_pred ccchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCcccccccCCCCccceEeec
Q 011998 235 KLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKV 298 (473)
Q Consensus 235 ~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~~~~~~~~~~k~f~~~v 298 (473)
.+... ...+.++..+... .........++++||.+..+-. -+|+|.+.+
T Consensus 419 ~~~~~--------~~~P~~R~~~~~~----~~~~~~~~~~~~fGG~~~~~~~---~~D~~~~~~ 467 (470)
T PLN02193 419 KFGEE--------EETPSSRGWTAST----TGTIDGKKGLVMHGGKAPTNDR---FDDLFFYGI 467 (470)
T ss_pred cCCCC--------CCCCCCCccccce----eeEEcCCceEEEEcCCCCcccc---ccceEEEec
Confidence 43211 1122333222110 1112223459999998765433 267776644
No 2
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=3.8e-33 Score=284.40 Aligned_cols=266 Identities=26% Similarity=0.363 Sum_probs=202.6
Q ss_pred cCcEEEEECCCCeEEecccCCCCCC-cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC--
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPE-AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-- 80 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~-~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-- 80 (473)
.+++++||+.+++|+++...+..|. .+.+|++++++++||||||... ...++++++||+.+++|+.++.+.
T Consensus 49 ~~~~~~yd~~~~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~GG~~~------~~~~~~v~~yd~~t~~W~~~~~~~~~ 122 (341)
T PLN02153 49 DKDLYVFDFNTHTWSIAPANGDVPRISCLGVRMVAVGTKLYIFGGRDE------KREFSDFYSYDTVKNEWTFLTKLDEE 122 (341)
T ss_pred eCcEEEEECCCCEEEEcCccCCCCCCccCceEEEEECCEEEEECCCCC------CCccCcEEEEECCCCEEEEeccCCCC
Confidence 5799999999999998864433343 2458999999999999999742 234689999999999999987542
Q ss_pred CCCCCceeeEEEEECCEEEEEeCCCCCC-----CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecc
Q 011998 81 NPPSARDSHTCSSWKNKIIVIGGEDGHD-----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGF 155 (473)
Q Consensus 81 ~~P~~R~~hs~~~~~~~IyV~GG~~~~~-----~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~ 155 (473)
..|.+|..|++++++++||||||.+... ..++++++||+.+++|+.++..+..|.+|.+|+++.++++|||+||.
T Consensus 123 ~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~~~~~~r~~~~~~~~~~~iyv~GG~ 202 (341)
T PLN02153 123 GGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPGENFEKRGGAGFAVVQGKIWVVYGF 202 (341)
T ss_pred CCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCCCCCCCCCcceEEEECCeEEEEecc
Confidence 2478999999999999999999986432 24689999999999999998766667899999999999999999997
Q ss_pred cCC-------CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC--------CCCccCcE
Q 011998 156 TDS-------QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEALDDM 220 (473)
Q Consensus 156 ~~~-------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~--------~~~~~~dv 220 (473)
... ...++++++||+.+++|+++...+..|.+|..|+++++ +++||||||... .....+|+
T Consensus 203 ~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~~~~~n~v 278 (341)
T PLN02153 203 ATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVV----GKYIIIFGGEVWPDLKGHLGPGTLSNEG 278 (341)
T ss_pred ccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEE----CCEEEEECcccCCccccccccccccccE
Confidence 421 12368899999999999999887778999999988876 799999999742 23456899
Q ss_pred EEEEccccceeeeeccchhhhccccccccccccCCCcceEEEccee-cccCCccEEEECCcccccccCCCCccceEeec
Q 011998 221 YYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTIS-DVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKV 298 (473)
Q Consensus 221 ~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~-~~~~~~~ili~GG~~~~~~~~~~~~k~f~~~v 298 (473)
|.||+.+..|+.+.... ..+.|+. +.++.. ....+++|||+||..... +.-.++|...|
T Consensus 279 ~~~d~~~~~W~~~~~~~-----------~~~~pr~-----~~~~~~~~v~~~~~~~~~gG~~~~~---~~~~~~~~~~~ 338 (341)
T PLN02153 279 YALDTETLVWEKLGECG-----------EPAMPRG-----WTAYTTATVYGKNGLLMHGGKLPTN---ERTDDLYFYAV 338 (341)
T ss_pred EEEEcCccEEEeccCCC-----------CCCCCCc-----cccccccccCCcceEEEEcCcCCCC---ccccceEEEec
Confidence 99999999998654211 1111222 112222 223345799999986653 22367766544
No 3
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=4.6e-34 Score=268.28 Aligned_cols=249 Identities=25% Similarity=0.468 Sum_probs=213.0
Q ss_pred cEEEEECCCCeEEeccc----------CCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEE
Q 011998 6 DLHILDTSSHTWISPSV----------RGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 75 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~----------~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 75 (473)
|+.++|..+-+|+++.+ .+-.|-.|++|+.+.+.+++||.||.+ +++...|-+|.||++++.|.+
T Consensus 45 DVH~lNa~~~RWtk~pp~~~ka~i~~~yp~VPyqRYGHtvV~y~d~~yvWGGRN-----D~egaCN~Ly~fDp~t~~W~~ 119 (392)
T KOG4693|consen 45 DVHVLNAENYRWTKMPPGITKATIESPYPAVPYQRYGHTVVEYQDKAYVWGGRN-----DDEGACNLLYEFDPETNVWKK 119 (392)
T ss_pred eeEEeeccceeEEecCcccccccccCCCCccchhhcCceEEEEcceEEEEcCcc-----Ccccccceeeeeccccccccc
Confidence 78999999999998764 112467899999999999999999984 345678999999999999999
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCC-CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEec
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDG-HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 154 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~-~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG 154 (473)
....|-.|.+|.+|++|++++.+|||||+.. .+.+.+|++++|+.|.+|+.+.+.+.+|.-|.+|+++++++.+|||||
T Consensus 120 p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~~a~~FS~d~h~ld~~TmtWr~~~Tkg~PprwRDFH~a~~~~~~MYiFGG 199 (392)
T KOG4693|consen 120 PEVEGFVPGARDGHSACVWGNQMYIFGGYEEDAQRFSQDTHVLDFATMTWREMHTKGDPPRWRDFHTASVIDGMMYIFGG 199 (392)
T ss_pred cceeeecCCccCCceeeEECcEEEEecChHHHHHhhhccceeEeccceeeeehhccCCCchhhhhhhhhhccceEEEecc
Confidence 9888999999999999999999999999854 346789999999999999999999999999999999999999999999
Q ss_pred ccCCC--------CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCC-CccCcEEEEEc
Q 011998 155 FTDSQ--------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL-EALDDMYYLYT 225 (473)
Q Consensus 155 ~~~~~--------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~-~~~~dv~~ld~ 225 (473)
+.+.. .+.+.+..+|+.+..|......+..|..|.+|++.++ +++||||||++... ..++|+|.||.
T Consensus 200 R~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvY----ng~~Y~FGGYng~ln~HfndLy~FdP 275 (392)
T KOG4693|consen 200 RSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVY----NGKMYMFGGYNGTLNVHFNDLYCFDP 275 (392)
T ss_pred ccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEE----cceEEEecccchhhhhhhcceeeccc
Confidence 96533 2568899999999999999888889999999999987 89999999998764 46999999999
Q ss_pred cccceeeeeccchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 226 GLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 226 ~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
.+..|+.+. ..+..++++...-.++.|. +|+.+||++.
T Consensus 276 ~t~~W~~I~-----------~~Gk~P~aRRRqC~~v~g~--------kv~LFGGTsP 313 (392)
T KOG4693|consen 276 KTSMWSVIS-----------VRGKYPSARRRQCSVVSGG--------KVYLFGGTSP 313 (392)
T ss_pred ccchheeee-----------ccCCCCCcccceeEEEECC--------EEEEecCCCC
Confidence 999987543 2334455555555555554 4999999977
No 4
>PLN02193 nitrile-specifier protein
Probab=100.00 E-value=5.9e-32 Score=286.72 Aligned_cols=248 Identities=24% Similarity=0.347 Sum_probs=197.4
Q ss_pred cCcEEEE--ECCC----CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEee
Q 011998 4 LRDLHIL--DTSS----HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 77 (473)
Q Consensus 4 l~dv~~y--D~~t----~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 77 (473)
++.+-+| ++.+ ++|.++...+++|.+|.+|++++++++||||||.... .....+++|+||+.+++|+.++
T Consensus 134 ~~~ig~y~~~~~~~~~~~~W~~~~~~~~~P~pR~~h~~~~~~~~iyv~GG~~~~----~~~~~~~v~~yD~~~~~W~~~~ 209 (470)
T PLN02193 134 LHSLGAYISLPSTPKLLGKWIKVEQKGEGPGLRCSHGIAQVGNKIYSFGGEFTP----NQPIDKHLYVFDLETRTWSISP 209 (470)
T ss_pred EEeeEEEEecCCChhhhceEEEcccCCCCCCCccccEEEEECCEEEEECCcCCC----CCCeeCcEEEEECCCCEEEeCC
Confidence 3444444 6655 8999998766789999999999999999999997321 2235678999999999999987
Q ss_pred cCCCCCC-CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEeccc
Q 011998 78 TSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 156 (473)
Q Consensus 78 ~~g~~P~-~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~ 156 (473)
.+++.|. +|.+|++++++++||||||.+... .++++|+||+.+++|+++++.+..|.+|+.|+++.++++||||||..
T Consensus 210 ~~g~~P~~~~~~~~~v~~~~~lYvfGG~~~~~-~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~~~~~iYv~GG~~ 288 (470)
T PLN02193 210 ATGDVPHLSCLGVRMVSIGSTLYVFGGRDASR-QYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAADEENVYVFGGVS 288 (470)
T ss_pred CCCCCCCCcccceEEEEECCEEEEECCCCCCC-CCccEEEEECCCCEEEEcCcCCCCCCCccceEEEEECCEEEEECCCC
Confidence 7665565 467899999999999999987654 68999999999999999987555589999999999999999999985
Q ss_pred CCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeecc
Q 011998 157 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 236 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l 236 (473)
. ...++++++||+.+++|+.+...+..|.+|..|+++++ +++||++||.+.. .++++|+||+.+.+|.++..+
T Consensus 289 ~-~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~~----~gkiyviGG~~g~--~~~dv~~yD~~t~~W~~~~~~ 361 (470)
T PLN02193 289 A-TARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEVV----QGKVWVVYGFNGC--EVDDVHYYDPVQDKWTQVETF 361 (470)
T ss_pred C-CCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEEE----CCcEEEEECCCCC--ccCceEEEECCCCEEEEeccC
Confidence 3 34678999999999999999876667788998888776 7899999998643 479999999999999865432
Q ss_pred chhhhccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 237 SLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 237 ~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
...+.++..+..+.+ +..|+|+||...
T Consensus 362 -----------g~~P~~R~~~~~~~~--------~~~iyv~GG~~~ 388 (470)
T PLN02193 362 -----------GVRPSERSVFASAAV--------GKHIVIFGGEIA 388 (470)
T ss_pred -----------CCCCCCcceeEEEEE--------CCEEEEECCccC
Confidence 112233333333333 235999999754
No 5
>PLN02153 epithiospecifier protein
Probab=100.00 E-value=1.2e-31 Score=273.44 Aligned_cols=222 Identities=24% Similarity=0.372 Sum_probs=179.0
Q ss_pred CcCcEEEEECCCCeEEecccC--CCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC
Q 011998 3 PLRDLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 80 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~--~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 80 (473)
.++++++||+.+++|+.+... ...|.+|.+|++++++++||||||............++++++||+.+++|+.++.++
T Consensus 99 ~~~~v~~yd~~t~~W~~~~~~~~~~~p~~R~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~l~~~~ 178 (341)
T PLN02153 99 EFSDFYSYDTVKNEWTFLTKLDEEGGPEARTFHSMASDENHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWVQLPDPG 178 (341)
T ss_pred ccCcEEEEECCCCEEEEeccCCCCCCCCCceeeEEEEECCEEEEECCccCCCccCCCcccceEEEEECCCCeEeeCCCCC
Confidence 468999999999999987421 123889999999999999999999854322122234689999999999999998877
Q ss_pred CCCCCceeeEEEEECCEEEEEeCCCCC-------CCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEe
Q 011998 81 NPPSARDSHTCSSWKNKIIVIGGEDGH-------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 81 ~~P~~R~~hs~~~~~~~IyV~GG~~~~-------~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
.+|.+|.+|++++++++|||+||.... ...++++++||+.+++|++++..+.+|.+|..|++++++++|||||
T Consensus 179 ~~~~~r~~~~~~~~~~~iyv~GG~~~~~~~gG~~~~~~~~v~~yd~~~~~W~~~~~~g~~P~~r~~~~~~~~~~~iyv~G 258 (341)
T PLN02153 179 ENFEKRGGAGFAVVQGKIWVVYGFATSILPGGKSDYESNAVQFFDPASGKWTEVETTGAKPSARSVFAHAVVGKYIIIFG 258 (341)
T ss_pred CCCCCCCcceEEEECCeEEEEeccccccccCCccceecCceEEEEcCCCcEEeccccCCCCCCcceeeeEEECCEEEEEC
Confidence 778899999999999999999997521 1236899999999999999988777899999999999999999999
Q ss_pred cccC--------CCCccccEEEEeCCCCcEEEEeeCCCCCCCc--ceeeEEEeccccCCEEEEEcccCCCCCccCcEEEE
Q 011998 154 GFTD--------SQNLYDDLYMIDVDSGLWTKVITTGEGPSAR--FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYL 223 (473)
Q Consensus 154 G~~~--------~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R--~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l 223 (473)
|... .....+++|+||+++++|+.+...+..|.+| ..++++.+ ..+++||||||++.....++|+|.|
T Consensus 259 G~~~~~~~~~~~~~~~~n~v~~~d~~~~~W~~~~~~~~~~~pr~~~~~~~~~v--~~~~~~~~~gG~~~~~~~~~~~~~~ 336 (341)
T PLN02153 259 GEVWPDLKGHLGPGTLSNEGYALDTETLVWEKLGECGEPAMPRGWTAYTTATV--YGKNGLLMHGGKLPTNERTDDLYFY 336 (341)
T ss_pred cccCCccccccccccccccEEEEEcCccEEEeccCCCCCCCCCcccccccccc--CCcceEEEEcCcCCCCccccceEEE
Confidence 9732 2345789999999999999997654444454 33444443 2456999999998877889999999
Q ss_pred Ecc
Q 011998 224 YTG 226 (473)
Q Consensus 224 d~~ 226 (473)
+..
T Consensus 337 ~~~ 339 (341)
T PLN02153 337 AVN 339 (341)
T ss_pred ecc
Confidence 764
No 6
>KOG4693 consensus Uncharacterized conserved protein, contains kelch repeat [General function prediction only]
Probab=100.00 E-value=1.7e-32 Score=257.79 Aligned_cols=203 Identities=30% Similarity=0.593 Sum_probs=184.8
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
.+.|.+++||+.+++|.+.++.|-.|.+|.+|++|++++.+|||||+.. ....+.+|++++|+.|-+|..+.+.++
T Consensus 102 gaCN~Ly~fDp~t~~W~~p~v~G~vPgaRDGHsAcV~gn~MyiFGGye~----~a~~FS~d~h~ld~~TmtWr~~~Tkg~ 177 (392)
T KOG4693|consen 102 GACNLLYEFDPETNVWKKPEVEGFVPGARDGHSACVWGNQMYIFGGYEE----DAQRFSQDTHVLDFATMTWREMHTKGD 177 (392)
T ss_pred cccceeeeeccccccccccceeeecCCccCCceeeEECcEEEEecChHH----HHHhhhccceeEeccceeeeehhccCC
Confidence 3578899999999999999999999999999999999999999999853 345678999999999999999999999
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCC--------CCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEe
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGH--------DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~--------~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
+|.-|..|+++++++.+|||||+.+. +.+.+.+..+|+.|..|...++.+..|..|..|++..++++||+||
T Consensus 178 PprwRDFH~a~~~~~~MYiFGGR~D~~gpfHs~~e~Yc~~i~~ld~~T~aW~r~p~~~~~P~GRRSHS~fvYng~~Y~FG 257 (392)
T KOG4693|consen 178 PPRWRDFHTASVIDGMMYIFGGRSDESGPFHSIHEQYCDTIMALDLATGAWTRTPENTMKPGGRRSHSTFVYNGKMYMFG 257 (392)
T ss_pred CchhhhhhhhhhccceEEEeccccccCCCccchhhhhcceeEEEeccccccccCCCCCcCCCcccccceEEEcceEEEec
Confidence 99999999999999999999998542 3456789999999999999998888999999999999999999999
Q ss_pred cccCC-CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC
Q 011998 154 GFTDS-QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 212 (473)
Q Consensus 154 G~~~~-~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~ 212 (473)
|+... ..-+|++|+||+.+..|..+...|..|.+|..+|++++ ++++|+|||...
T Consensus 258 GYng~ln~HfndLy~FdP~t~~W~~I~~~Gk~P~aRRRqC~~v~----g~kv~LFGGTsP 313 (392)
T KOG4693|consen 258 GYNGTLNVHFNDLYCFDPKTSMWSVISVRGKYPSARRRQCSVVS----GGKVYLFGGTSP 313 (392)
T ss_pred ccchhhhhhhcceeecccccchheeeeccCCCCCcccceeEEEE----CCEEEEecCCCC
Confidence 99643 34689999999999999999999999999999998886 899999999754
No 7
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.98 E-value=2.8e-31 Score=281.57 Aligned_cols=223 Identities=35% Similarity=0.611 Sum_probs=204.9
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
|+|+||..+..|......+..|.+|++|++++++++||+|||... ....+++++.||+.|++|..+.+.+.+|.+
T Consensus 89 dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~lfGG~~~-----~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~ 163 (482)
T KOG0379|consen 89 DLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYLFGGTDK-----KYRNLNELHSLDLSTRTWSLLSPTGDPPPP 163 (482)
T ss_pred eeEEeecCCcccccccccCCCCCcccceeEEEECCeEEEEccccC-----CCCChhheEeccCCCCcEEEecCcCCCCCC
Confidence 699999999999999998999999999999999999999999854 233478999999999999999999999999
Q ss_pred ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccE
Q 011998 86 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDL 165 (473)
Q Consensus 86 R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv 165 (473)
|.+|++++++++||||||.+.....+||+|+||+++.+|.++...+..|.||++|++++++++++||||......+++|+
T Consensus 164 r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~~g~~P~pR~gH~~~~~~~~~~v~gG~~~~~~~l~D~ 243 (482)
T KOG0379|consen 164 RAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDTQGEAPSPRYGHAMVVVGNKLLVFGGGDDGDVYLNDV 243 (482)
T ss_pred cccceEEEECCEEEEECCccCcccceeeeeeeccccccceecccCCCCCCCCCCceEEEECCeEEEEeccccCCceecce
Confidence 99999999999999999998887789999999999999999999999999999999999999999999997677899999
Q ss_pred EEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCC-ccCcEEEEEccccceeeeeccc
Q 011998 166 YMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLE-ALDDMYYLYTGLVNERKLEKLS 237 (473)
Q Consensus 166 ~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~-~~~dv~~ld~~~~~w~~~~~l~ 237 (473)
|.||+.+..|.++...+..|.+|+.|+.++. +.+++++||...... .+.++|.|+.....|..+....
T Consensus 244 ~~ldl~~~~W~~~~~~g~~p~~R~~h~~~~~----~~~~~l~gG~~~~~~~~l~~~~~l~~~~~~w~~~~~~~ 312 (482)
T KOG0379|consen 244 HILDLSTWEWKLLPTGGDLPSPRSGHSLTVS----GDHLLLFGGGTDPKQEPLGDLYGLDLETLVWSKVESVG 312 (482)
T ss_pred EeeecccceeeeccccCCCCCCcceeeeEEE----CCEEEEEcCCcccccccccccccccccccceeeeeccc
Confidence 9999999999999999999999999999965 899999999887544 7999999999988888765443
No 8
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.98 E-value=4.8e-32 Score=267.61 Aligned_cols=226 Identities=28% Similarity=0.500 Sum_probs=198.3
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
-+||+|+||+.+++|+++.. ++.|.||++|.++++. +.+|||||.-.+.+......+.|+|+||+.+++|+++...|
T Consensus 96 vYndLy~Yn~k~~eWkk~~s-pn~P~pRsshq~va~~s~~l~~fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g- 173 (521)
T KOG1230|consen 96 VYNDLYSYNTKKNEWKKVVS-PNAPPPRSSHQAVAVPSNILWLFGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG- 173 (521)
T ss_pred EeeeeeEEeccccceeEecc-CCCcCCCccceeEEeccCeEEEeccccCCcchhhhhhhhheeeeeeccchheeeccCC-
Confidence 47999999999999999865 5789999999999987 89999999866665666677899999999999999998765
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCC---CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccC
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHD---YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD 157 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~---~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~ 157 (473)
.|.||.+|.|+++..+|++|||+.... .++||||+||+.+.+|.++.+.|..|.||++|+..+. .+.|||+||++.
T Consensus 174 ~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdtykW~Klepsga~PtpRSGcq~~vtpqg~i~vyGGYsK 253 (521)
T KOG1230|consen 174 GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDTYKWSKLEPSGAGPTPRSGCQFSVTPQGGIVVYGGYSK 253 (521)
T ss_pred CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccceeeeeccCCCCCCCCCCcceEEecCCCcEEEEcchhH
Confidence 689999999999999999999985432 4799999999999999999998889999999999888 889999999952
Q ss_pred --------CCCccccEEEEeCCC-----CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC--------CCCc
Q 011998 158 --------SQNLYDDLYMIDVDS-----GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK--------SLEA 216 (473)
Q Consensus 158 --------~~~~~ndv~~yd~~t-----~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~--------~~~~ 216 (473)
.+...+|+|.++++. .+|.++.+.|..|.+|.+.+.++. .+++-++|||.-. ....
T Consensus 254 ~~~kK~~dKG~~hsDmf~L~p~~~~~dKw~W~kvkp~g~kPspRsgfsv~va---~n~kal~FGGV~D~eeeeEsl~g~F 330 (521)
T KOG1230|consen 254 QRVKKDVDKGTRHSDMFLLKPEDGREDKWVWTKVKPSGVKPSPRSGFSVAVA---KNHKALFFGGVCDLEEEEESLSGEF 330 (521)
T ss_pred hhhhhhhhcCceeeeeeeecCCcCCCcceeEeeccCCCCCCCCCCceeEEEe---cCCceEEecceecccccchhhhhhh
Confidence 345789999999998 689999999999999999887776 4779999999532 2357
Q ss_pred cCcEEEEEccccceeee
Q 011998 217 LDDMYYLYTGLVNERKL 233 (473)
Q Consensus 217 ~~dv~~ld~~~~~w~~~ 233 (473)
+||+|.||+...+|.+.
T Consensus 331 ~NDLy~fdlt~nrW~~~ 347 (521)
T KOG1230|consen 331 FNDLYFFDLTRNRWSEG 347 (521)
T ss_pred hhhhhheecccchhhHh
Confidence 99999999999999765
No 9
>PHA02713 hypothetical protein; Provisional
Probab=99.98 E-value=8.7e-31 Score=282.75 Aligned_cols=211 Identities=12% Similarity=0.170 Sum_probs=179.7
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
..+++||+.+++|..+ .++|.+|.+|++++++++||++||... .....+++++||+.+++|..++++ |.
T Consensus 272 ~~v~~yd~~~~~W~~l---~~mp~~r~~~~~a~l~~~IYviGG~~~-----~~~~~~~v~~Yd~~~n~W~~~~~m---~~ 340 (557)
T PHA02713 272 PCILVYNINTMEYSVI---STIPNHIINYASAIVDNEIIIAGGYNF-----NNPSLNKVYKINIENKIHVELPPM---IK 340 (557)
T ss_pred CCEEEEeCCCCeEEEC---CCCCccccceEEEEECCEEEEEcCCCC-----CCCccceEEEEECCCCeEeeCCCC---cc
Confidence 4689999999999998 488999999999999999999999632 123468999999999999998766 89
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC-----
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ----- 159 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~----- 159 (473)
+|..|++++++++||++||.++.. .++++++||+.+++|..+++ ||.+|..|+++.++++||++||.....
T Consensus 341 ~R~~~~~~~~~g~IYviGG~~~~~-~~~sve~Ydp~~~~W~~~~~---mp~~r~~~~~~~~~g~IYviGG~~~~~~~~~~ 416 (557)
T PHA02713 341 NRCRFSLAVIDDTIYAIGGQNGTN-VERTIECYTMGDDKWKMLPD---MPIALSSYGMCVLDQYIYIIGGRTEHIDYTSV 416 (557)
T ss_pred hhhceeEEEECCEEEEECCcCCCC-CCceEEEEECCCCeEEECCC---CCcccccccEEEECCEEEEEeCCCcccccccc
Confidence 999999999999999999987654 67899999999999999986 999999999999999999999985321
Q ss_pred ------------CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 160 ------------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 160 ------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
..++.+++||+++++|+.+.++ +.+|..++++++ +++||++||.+......+.+.+||+.+
T Consensus 417 ~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~m---~~~r~~~~~~~~----~~~IYv~GG~~~~~~~~~~ve~Ydp~~ 489 (557)
T PHA02713 417 HHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPNF---WTGTIRPGVVSH----KDDIYVVCDIKDEKNVKTCIFRYNTNT 489 (557)
T ss_pred cccccccccccccccceEEEECCCCCeEeecCCC---CcccccCcEEEE----CCEEEEEeCCCCCCccceeEEEecCCC
Confidence 1367899999999999998864 677888887776 799999999875433445689999999
Q ss_pred -cceeeeeccc
Q 011998 228 -VNERKLEKLS 237 (473)
Q Consensus 228 -~~w~~~~~l~ 237 (473)
.+|..+..++
T Consensus 490 ~~~W~~~~~m~ 500 (557)
T PHA02713 490 YNGWELITTTE 500 (557)
T ss_pred CCCeeEccccC
Confidence 7998766543
No 10
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=1e-30 Score=281.71 Aligned_cols=211 Identities=21% Similarity=0.373 Sum_probs=191.1
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
+.++.+..||+.+++|..+ .++|.+|..+++++++++||++||.+. +...++.+|+||+.+++|..++++
T Consensus 298 ~~~~~ve~yd~~~~~w~~~---a~m~~~r~~~~~~~~~~~lYv~GG~~~-----~~~~l~~ve~YD~~~~~W~~~a~M-- 367 (571)
T KOG4441|consen 298 QSLRSVECYDPKTNEWSSL---APMPSPRCRVGVAVLNGKLYVVGGYDS-----GSDRLSSVERYDPRTNQWTPVAPM-- 367 (571)
T ss_pred cccceeEEecCCcCcEeec---CCCCcccccccEEEECCEEEEEccccC-----CCcccceEEEecCCCCceeccCCc--
Confidence 4578899999999999999 589999999999999999999999742 445689999999999999998776
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
..+|..|+++++++.||++||+++.. .++.+++||+.+++|..+++ |+.+|++|+++.++++||++||.......
T Consensus 368 -~~~R~~~~v~~l~g~iYavGG~dg~~-~l~svE~YDp~~~~W~~va~---m~~~r~~~gv~~~~g~iYi~GG~~~~~~~ 442 (571)
T KOG4441|consen 368 -NTKRSDFGVAVLDGKLYAVGGFDGEK-SLNSVECYDPVTNKWTPVAP---MLTRRSGHGVAVLGGKLYIIGGGDGSSNC 442 (571)
T ss_pred -cCccccceeEEECCEEEEEecccccc-ccccEEEecCCCCcccccCC---CCcceeeeEEEEECCEEEEEcCcCCCccc
Confidence 89999999999999999999999775 89999999999999999997 88899999999999999999999666558
Q ss_pred cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 162 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
++.+++||+.+++|+.++++ +.+|.++.++++ +++||++||.+. ...+..+.+||..+..|..+..
T Consensus 443 l~sve~YDP~t~~W~~~~~M---~~~R~~~g~a~~----~~~iYvvGG~~~-~~~~~~VE~ydp~~~~W~~v~~ 508 (571)
T KOG4441|consen 443 LNSVECYDPETNTWTLIAPM---NTRRSGFGVAVL----NGKIYVVGGFDG-TSALSSVERYDPETNQWTMVAP 508 (571)
T ss_pred cceEEEEcCCCCceeecCCc---ccccccceEEEE----CCEEEEECCccC-CCccceEEEEcCCCCceeEccc
Confidence 99999999999999999986 678888888876 899999999998 5667779999999999986643
No 11
>KOG0379 consensus Kelch repeat-containing proteins [General function prediction only]
Probab=99.97 E-value=1e-30 Score=277.22 Aligned_cols=233 Identities=33% Similarity=0.581 Sum_probs=198.6
Q ss_pred cCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeC-eEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEE
Q 011998 22 VRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYN-DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIV 100 (473)
Q Consensus 22 ~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~-dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV 100 (473)
..+..|.+|.+|+++.+++++|||||...... ..+ |+|+||..+..|......+..|.+|++|+++.++++||+
T Consensus 53 ~~~~~p~~R~~hs~~~~~~~~~vfGG~~~~~~-----~~~~dl~~~d~~~~~w~~~~~~g~~p~~r~g~~~~~~~~~l~l 127 (482)
T KOG0379|consen 53 VLGVGPIPRAGHSAVLIGNKLYVFGGYGSGDR-----LTDLDLYVLDLESQLWTKPAATGDEPSPRYGHSLSAVGDKLYL 127 (482)
T ss_pred cCCCCcchhhccceeEECCEEEEECCCCCCCc-----cccceeEEeecCCcccccccccCCCCCcccceeEEEECCeEEE
Confidence 44678999999999999999999999754321 112 799999999999999999999999999999999999999
Q ss_pred EeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 101 IGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 101 ~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
|||.+.....+++++.||+.|.+|..+.+.+.+|.+|.+|+++.++++||||||....+..+|++|+||+++.+|.++..
T Consensus 128 fGG~~~~~~~~~~l~~~d~~t~~W~~l~~~~~~P~~r~~Hs~~~~g~~l~vfGG~~~~~~~~ndl~i~d~~~~~W~~~~~ 207 (482)
T KOG0379|consen 128 FGGTDKKYRNLNELHSLDLSTRTWSLLSPTGDPPPPRAGHSATVVGTKLVVFGGIGGTGDSLNDLHIYDLETSTWSELDT 207 (482)
T ss_pred EccccCCCCChhheEeccCCCCcEEEecCcCCCCCCcccceEEEECCEEEEECCccCcccceeeeeeeccccccceeccc
Confidence 99998755568999999999999999999999999999999999999999999997776689999999999999999999
Q ss_pred CCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceE
Q 011998 181 TGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALV 260 (473)
Q Consensus 181 ~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~ 260 (473)
.+..|.||++|+++++ +++++||||.......++|+|.||+.+..|+.+. ..+..+.++..+.+.
T Consensus 208 ~g~~P~pR~gH~~~~~----~~~~~v~gG~~~~~~~l~D~~~ldl~~~~W~~~~-----------~~g~~p~~R~~h~~~ 272 (482)
T KOG0379|consen 208 QGEAPSPRYGHAMVVV----GNKLLVFGGGDDGDVYLNDVHILDLSTWEWKLLP-----------TGGDLPSPRSGHSLT 272 (482)
T ss_pred CCCCCCCCCCceEEEE----CCeEEEEeccccCCceecceEeeecccceeeecc-----------ccCCCCCCcceeeeE
Confidence 9999999999999987 7888888888766789999999999998886322 223334555555555
Q ss_pred EEcceecccCCccEEEECCccc
Q 011998 261 RIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 261 ~~G~~~~~~~~~~ili~GG~~~ 282 (473)
+.|. .++++||..-
T Consensus 273 ~~~~--------~~~l~gG~~~ 286 (482)
T KOG0379|consen 273 VSGD--------HLLLFGGGTD 286 (482)
T ss_pred EECC--------EEEEEcCCcc
Confidence 4443 3888888654
No 12
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.97 E-value=7e-29 Score=251.13 Aligned_cols=240 Identities=18% Similarity=0.288 Sum_probs=180.3
Q ss_pred cCcEEEEECCC--CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE-EeecCC
Q 011998 4 LRDLHILDTSS--HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSG 80 (473)
Q Consensus 4 l~dv~~yD~~t--~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g 80 (473)
++++++|+... .+|..+ +++|.+|..|++++++++||++||... ...++++|+||+.+++|+ +.....
T Consensus 38 ~~~v~~~~~~~~~~~W~~~---~~lp~~r~~~~~~~~~~~lyviGG~~~------~~~~~~v~~~d~~~~~w~~~~~~~~ 108 (323)
T TIGR03548 38 YKGIYIAKDENSNLKWVKD---GQLPYEAAYGASVSVENGIYYIGGSNS------SERFSSVYRITLDESKEELICETIG 108 (323)
T ss_pred eeeeEEEecCCCceeEEEc---ccCCccccceEEEEECCEEEEEcCCCC------CCCceeEEEEEEcCCceeeeeeEcC
Confidence 46889886322 379887 588999998888999999999999642 234789999999999983 222234
Q ss_pred CCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCC-CCcceeEEEEECCEEEEEecccCCC
Q 011998 81 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL-SPRAGHSTVAFGKNLFVFGGFTDSQ 159 (473)
Q Consensus 81 ~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p-~~R~~hs~~~~~~~LyV~GG~~~~~ 159 (473)
++|.+|..|++++++++|||+||..... .++++++||+.+++|+++++ +| .+|..|+++.++++|||+||...
T Consensus 109 ~lp~~~~~~~~~~~~~~iYv~GG~~~~~-~~~~v~~yd~~~~~W~~~~~---~p~~~r~~~~~~~~~~~iYv~GG~~~-- 182 (323)
T TIGR03548 109 NLPFTFENGSACYKDGTLYVGGGNRNGK-PSNKSYLFNLETQEWFELPD---FPGEPRVQPVCVKLQNELYVFGGGSN-- 182 (323)
T ss_pred CCCcCccCceEEEECCEEEEEeCcCCCc-cCceEEEEcCCCCCeeECCC---CCCCCCCcceEEEECCEEEEEcCCCC--
Confidence 5589999999999999999999985443 58999999999999999985 65 48999999999999999999843
Q ss_pred CccccEEEEeCCCCcEEEEeeCCC--CCCCcceeeEEEeccccCCEEEEEcccCCCC-----------------------
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGE--GPSARFSVAGDCLDPLKGGVLVFIGGCNKSL----------------------- 214 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~--~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~----------------------- 214 (473)
....++++||+++++|+.+..+.. .|..+..++++++ .+++|||+||.+...
T Consensus 183 ~~~~~~~~yd~~~~~W~~~~~~~~~~~p~~~~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (323)
T TIGR03548 183 IAYTDGYKYSPKKNQWQKVADPTTDSEPISLLGAASIKI---NESLLLCIGGFNKDVYNDAVIDLATMKDESLKGYKKEY 259 (323)
T ss_pred ccccceEEEecCCCeeEECCCCCCCCCceeccceeEEEE---CCCEEEEECCcCHHHHHHHHhhhhhccchhhhhhHHHH
Confidence 235678999999999999987532 3444445555544 478999999986421
Q ss_pred --------CccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 215 --------EALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 215 --------~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
...+++++||+.+.+|..+..++. .++....++.++ +.|+++||...
T Consensus 260 ~~~~~~~~~~~~~v~~yd~~~~~W~~~~~~p~-------------~~r~~~~~~~~~--------~~iyv~GG~~~ 314 (323)
T TIGR03548 260 FLKPPEWYNWNRKILIYNVRTGKWKSIGNSPF-------------FARCGAALLLTG--------NNIFSINGELK 314 (323)
T ss_pred hCCCccccCcCceEEEEECCCCeeeEcccccc-------------cccCchheEEEC--------CEEEEEecccc
Confidence 113679999999999986553221 122333344443 34999999644
No 13
>PHA02713 hypothetical protein; Provisional
Probab=99.97 E-value=1.1e-29 Score=274.07 Aligned_cols=205 Identities=14% Similarity=0.146 Sum_probs=177.2
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.++++++||+.+++|..+ +++|.+|.+|++++++++||++||... ...++++++||+.+++|+.++++
T Consensus 318 ~~~~v~~Yd~~~n~W~~~---~~m~~~R~~~~~~~~~g~IYviGG~~~------~~~~~sve~Ydp~~~~W~~~~~m--- 385 (557)
T PHA02713 318 SLNKVYKINIENKIHVEL---PPMIKNRCRFSLAVIDDTIYAIGGQNG------TNVERTIECYTMGDDKWKMLPDM--- 385 (557)
T ss_pred ccceEEEEECCCCeEeeC---CCCcchhhceeEEEECCEEEEECCcCC------CCCCceEEEEECCCCeEEECCCC---
Confidence 468899999999999988 589999999999999999999999632 22467899999999999998765
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCC-----------------CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHD-----------------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 145 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~-----------------~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~ 145 (473)
|.+|.+|++++++++|||+||.++.. ..++.+++||+.+++|+.+++ |+.+|..++++.+
T Consensus 386 p~~r~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~ve~YDP~td~W~~v~~---m~~~r~~~~~~~~ 462 (557)
T PHA02713 386 PIALSSYGMCVLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHSSNKVIRYDTVNNIWETLPN---FWTGTIRPGVVSH 462 (557)
T ss_pred CcccccccEEEECCEEEEEeCCCcccccccccccccccccccccccceEEEECCCCCeEeecCC---CCcccccCcEEEE
Confidence 99999999999999999999986432 136889999999999999986 9999999999999
Q ss_pred CCEEEEEecccCCCCccccEEEEeCCC-CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEE
Q 011998 146 GKNLFVFGGFTDSQNLYDDLYMIDVDS-GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 224 (473)
Q Consensus 146 ~~~LyV~GG~~~~~~~~ndv~~yd~~t-~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld 224 (473)
+++|||+||........+.+++||+++ ++|+.+.. .|.+|..+.++++ +++||++||.+.. ..+.+||
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~---m~~~r~~~~~~~~----~~~iyv~Gg~~~~----~~~e~yd 531 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITT---TESRLSALHTILH----DNTIMMLHCYESY----MLQDTFN 531 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccc---cCcccccceeEEE----CCEEEEEeeecce----eehhhcC
Confidence 999999999864333445689999999 89999886 4788998888887 8999999998762 3688999
Q ss_pred ccccceeee
Q 011998 225 TGLVNERKL 233 (473)
Q Consensus 225 ~~~~~w~~~ 233 (473)
+.+.+|..+
T Consensus 532 ~~~~~W~~~ 540 (557)
T PHA02713 532 VYTYEWNHI 540 (557)
T ss_pred cccccccch
Confidence 999999754
No 14
>PHA03098 kelch-like protein; Provisional
Probab=99.97 E-value=2.8e-29 Score=270.59 Aligned_cols=210 Identities=16% Similarity=0.246 Sum_probs=181.2
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
..+++++||+.+++|..+ +++|.+|.+|++++++++||++||.. .....+++++||+.+++|+.++++
T Consensus 309 ~~~~v~~yd~~~~~W~~~---~~~~~~R~~~~~~~~~~~lyv~GG~~------~~~~~~~v~~yd~~~~~W~~~~~l--- 376 (534)
T PHA03098 309 SVNSVVSYDTKTKSWNKV---PELIYPRKNPGVTVFNNRIYVIGGIY------NSISLNTVESWKPGESKWREEPPL--- 376 (534)
T ss_pred eeccEEEEeCCCCeeeEC---CCCCcccccceEEEECCEEEEEeCCC------CCEecceEEEEcCCCCceeeCCCc---
Confidence 457899999999999988 57899999999999999999999974 234578999999999999998665
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCC--
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN-- 160 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~-- 160 (473)
|.+|..|+++.++++|||+||.......++++++||+.+++|+.+++ +|.+|.+|+++.++++|||+||......
T Consensus 377 p~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 453 (534)
T PHA03098 377 IFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSP---LPISHYGGCAIYHDGKIYVIGGISYIDNIK 453 (534)
T ss_pred CcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCC---CCccccCceEEEECCEEEEECCccCCCCCc
Confidence 89999999999999999999986655568999999999999999986 8999999999999999999999854322
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
.++.+++||+.+++|+.+.. .|.+|..++++.+ +++|||+||.... ...++++.||..+..|..+..
T Consensus 454 ~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~ 520 (534)
T PHA03098 454 VYNIVESYNPVTNKWTELSS---LNFPRINASLCIF----NNKIYVVGGDKYE-YYINEIEVYDDKTNTWTLFCK 520 (534)
T ss_pred ccceEEEecCCCCceeeCCC---CCcccccceEEEE----CCEEEEEcCCcCC-cccceeEEEeCCCCEEEecCC
Confidence 36779999999999999875 4667888877765 7999999998763 357899999999999976543
No 15
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=99.97 E-value=2.4e-29 Score=271.13 Aligned_cols=210 Identities=22% Similarity=0.380 Sum_probs=188.6
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
..++++++||+.+++|..+ ++|..+|.+|+++++++.||++||.+ +...++.+.+||+.+++|+.+.++
T Consensus 346 ~~l~~ve~YD~~~~~W~~~---a~M~~~R~~~~v~~l~g~iYavGG~d------g~~~l~svE~YDp~~~~W~~va~m-- 414 (571)
T KOG4441|consen 346 DRLSSVERYDPRTNQWTPV---APMNTKRSDFGVAVLDGKLYAVGGFD------GEKSLNSVECYDPVTNKWTPVAPM-- 414 (571)
T ss_pred cccceEEEecCCCCceecc---CCccCccccceeEEECCEEEEEeccc------cccccccEEEecCCCCcccccCCC--
Confidence 3689999999999999997 69999999999999999999999974 455788999999999999999766
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
+.+|++|++++++++||++||.++...+++.+++||+.+++|+.+++ |+.+|.+|.++.++++||++||++. ...
T Consensus 415 -~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---M~~~R~~~g~a~~~~~iYvvGG~~~-~~~ 489 (571)
T KOG4441|consen 415 -LTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---MNTRRSGFGVAVLNGKIYVVGGFDG-TSA 489 (571)
T ss_pred -CcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC---cccccccceEEEECCEEEEECCccC-CCc
Confidence 77999999999999999999999887789999999999999999997 9999999999999999999999966 556
Q ss_pred cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 162 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
...+++||+.+++|+.+..+ +.+|..+..+.+ ++++|++||++. ...++.+-.||..+.+|.....
T Consensus 490 ~~~VE~ydp~~~~W~~v~~m---~~~rs~~g~~~~----~~~ly~vGG~~~-~~~l~~ve~ydp~~d~W~~~~~ 555 (571)
T KOG4441|consen 490 LSSVERYDPETNQWTMVAPM---TSPRSAVGVVVL----GGKLYAVGGFDG-NNNLNTVECYDPETDTWTEVTE 555 (571)
T ss_pred cceEEEEcCCCCceeEcccC---ccccccccEEEE----CCEEEEEecccC-ccccceeEEcCCCCCceeeCCC
Confidence 77799999999999999654 567776666665 899999999776 6789999999999999986554
No 16
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.96 E-value=3.8e-28 Score=247.88 Aligned_cols=219 Identities=19% Similarity=0.249 Sum_probs=162.5
Q ss_pred CcEEEEEC--CCCeEEecccCCCCC-CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 5 RDLHILDT--SSHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~--~t~~W~~l~~~~~~P-~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
+++++||+ .+++|..+ .++| .+|.+|++++++++|||+||+...........++++|+||+.+++|++++. .
T Consensus 29 ~~~~~~d~~~~~~~W~~l---~~~p~~~R~~~~~~~~~~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~--~ 103 (346)
T TIGR03547 29 TSWYKLDLKKPSKGWQKI---ADFPGGPRNQAVAAAIDGKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDT--R 103 (346)
T ss_pred CeeEEEECCCCCCCceEC---CCCCCCCcccceEEEECCEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCC--C
Confidence 57899996 57899998 4777 589999999999999999997532111122357899999999999999863 2
Q ss_pred CCCCceeeEEE-EECCEEEEEeCCCCCC---------------------------------CccceEEEEECCCCCEEEe
Q 011998 82 PPSARDSHTCS-SWKNKIIVIGGEDGHD---------------------------------YYLSDVHILDTDTLTWKEL 127 (473)
Q Consensus 82 ~P~~R~~hs~~-~~~~~IyV~GG~~~~~---------------------------------~~~ndv~~yD~~t~~W~~l 127 (473)
+|.+|.+|+++ +++++||++||.+... ..++++++||+.+++|+.+
T Consensus 104 ~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~YDp~t~~W~~~ 183 (346)
T TIGR03547 104 SPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQPPEDYFWNKNVLSYDPSTNQWRNL 183 (346)
T ss_pred CCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCChhHcCccceEEEEECCCCceeEC
Confidence 47788888877 6899999999986320 1247899999999999999
Q ss_pred eCCCCCCC-CcceeEEEEECCEEEEEecccCCCCccccEEEEeC--CCCcEEEEeeCCCC----CCCcceeeEEEecccc
Q 011998 128 NTSGMVLS-PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV--DSGLWTKVITTGEG----PSARFSVAGDCLDPLK 200 (473)
Q Consensus 128 ~~~g~~p~-~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~--~t~~W~~v~~~g~~----P~~R~~~~a~~~~~~~ 200 (473)
++ +|. +|.+|+++.++++|||+||.........+++.|++ .+++|+.+..+... +..|.+|+++.+
T Consensus 184 ~~---~p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~m~~~r~~~~~~~~~~~a~~~---- 256 (346)
T TIGR03547 184 GE---NPFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPPLPPPKSSSQEGLAGAFAGIS---- 256 (346)
T ss_pred cc---CCCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCCCCCCCCCccccccEEeeeEE----
Confidence 86 775 78999999999999999998543333456777765 67799998875321 112234444554
Q ss_pred CCEEEEEcccCCCC----------------CccCcEEEEEccccceeeeec
Q 011998 201 GGVLVFIGGCNKSL----------------EALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 201 ~~~l~v~GG~~~~~----------------~~~~dv~~ld~~~~~w~~~~~ 235 (473)
+++|||+||.+... ..+..+.+|+....+|..+..
T Consensus 257 ~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~ 307 (346)
T TIGR03547 257 NGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK 307 (346)
T ss_pred CCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC
Confidence 89999999986321 112356777887888876543
No 17
>KOG1230 consensus Protein containing repeated kelch motifs [General function prediction only]
Probab=99.96 E-value=9.3e-29 Score=244.40 Aligned_cols=239 Identities=31% Similarity=0.458 Sum_probs=186.2
Q ss_pred CCCCCcccceEEEEEC--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEEC-CEEEE
Q 011998 24 GEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIV 100 (473)
Q Consensus 24 ~~~P~~R~~hsa~~~~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~IyV 100 (473)
-++|+||.+.++++.. +-|++|||.-. +.....+++|+|.||..+++|+++... +.|.||.+|.++++. +.+||
T Consensus 61 ~~~PspRsn~sl~~nPekeELilfGGEf~--ngqkT~vYndLy~Yn~k~~eWkk~~sp-n~P~pRsshq~va~~s~~l~~ 137 (521)
T KOG1230|consen 61 VPPPSPRSNPSLFANPEKEELILFGGEFY--NGQKTHVYNDLYSYNTKKNEWKKVVSP-NAPPPRSSHQAVAVPSNILWL 137 (521)
T ss_pred CCCCCCCCCcceeeccCcceeEEecceee--cceeEEEeeeeeEEeccccceeEeccC-CCcCCCccceeEEeccCeEEE
Confidence 3679999999998864 68999999532 245567899999999999999999764 568899999999994 89999
Q ss_pred EeCCCC-CC----CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC---CccccEEEEeCCC
Q 011998 101 IGGEDG-HD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ---NLYDDLYMIDVDS 172 (473)
Q Consensus 101 ~GG~~~-~~----~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~---~~~ndv~~yd~~t 172 (473)
|||.-. ++ ..+.|+|+||+.+++|+++...| -|.||++|.+++...+|+||||+.+.. .++||+|+||+++
T Consensus 138 fGGEfaSPnq~qF~HYkD~W~fd~~trkweql~~~g-~PS~RSGHRMvawK~~lilFGGFhd~nr~y~YyNDvy~FdLdt 216 (521)
T KOG1230|consen 138 FGGEFASPNQEQFHHYKDLWLFDLKTRKWEQLEFGG-GPSPRSGHRMVAWKRQLILFGGFHDSNRDYIYYNDVYAFDLDT 216 (521)
T ss_pred eccccCCcchhhhhhhhheeeeeeccchheeeccCC-CCCCCccceeEEeeeeEEEEcceecCCCceEEeeeeEEEeccc
Confidence 999732 21 23789999999999999998765 799999999999999999999996543 3789999999999
Q ss_pred CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC--------CCccCcEEEEEccccceeeeeccchhhhccc
Q 011998 173 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVNERKLEKLSLRKQLKL 244 (473)
Q Consensus 173 ~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~ 244 (473)
-+|+++.+.|..|.+|.+++..+. ..+.|||+||++.. ....+|+|.++....+..+ +.|.+.
T Consensus 217 ykW~Klepsga~PtpRSGcq~~vt---pqg~i~vyGGYsK~~~kK~~dKG~~hsDmf~L~p~~~~~dK------w~W~kv 287 (521)
T KOG1230|consen 217 YKWSKLEPSGAGPTPRSGCQFSVT---PQGGIVVYGGYSKQRVKKDVDKGTRHSDMFLLKPEDGREDK------WVWTKV 287 (521)
T ss_pred eeeeeccCCCCCCCCCCcceEEec---CCCcEEEEcchhHhhhhhhhhcCceeeeeeeecCCcCCCcc------eeEeec
Confidence 999999998888999999887765 47899999998643 4578999999998832111 111233
Q ss_pred cccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 245 KCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 245 ~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
+..+..|+|+..- +...-.+.+-|.+||+-.
T Consensus 288 kp~g~kPspRsgf-------sv~va~n~kal~FGGV~D 318 (521)
T KOG1230|consen 288 KPSGVKPSPRSGF-------SVAVAKNHKALFFGGVCD 318 (521)
T ss_pred cCCCCCCCCCCce-------eEEEecCCceEEecceec
Confidence 3344445555433 333334446777888643
No 18
>PHA03098 kelch-like protein; Provisional
Probab=99.96 E-value=5.9e-28 Score=260.37 Aligned_cols=206 Identities=16% Similarity=0.241 Sum_probs=172.9
Q ss_pred EEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCc
Q 011998 7 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 86 (473)
Q Consensus 7 v~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 86 (473)
+..|+..+++|..+. +.| .+.+|+++++++.||++||... .....+++++||+.+++|..++.+ |.+|
T Consensus 266 ~~~~~~~~~~~~~~~---~~~-~~~~~~~~~~~~~lyv~GG~~~-----~~~~~~~v~~yd~~~~~W~~~~~~---~~~R 333 (534)
T PHA03098 266 YITNYSPLSEINTII---DIH-YVYCFGSVVLNNVIYFIGGMNK-----NNLSVNSVVSYDTKTKSWNKVPEL---IYPR 333 (534)
T ss_pred eeecchhhhhccccc---Ccc-ccccceEEEECCEEEEECCCcC-----CCCeeccEEEEeCCCCeeeECCCC---Cccc
Confidence 456888888898873 334 3556789999999999999743 233568999999999999988655 8899
Q ss_pred eeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEE
Q 011998 87 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 166 (473)
Q Consensus 87 ~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~ 166 (473)
..|++++++++||++||.+.. ..++++++||+.+++|+.+++ +|.+|++|+++.++++|||+||.......+++++
T Consensus 334 ~~~~~~~~~~~lyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~---lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~ 409 (534)
T PHA03098 334 KNPGVTVFNNRIYVIGGIYNS-ISLNTVESWKPGESKWREEPP---LIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVE 409 (534)
T ss_pred ccceEEEECCEEEEEeCCCCC-EecceEEEEcCCCCceeeCCC---cCcCCccceEEEECCEEEEECCcCCCCcccceEE
Confidence 999999999999999998754 368999999999999999886 8999999999999999999999865555689999
Q ss_pred EEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCC--CccCcEEEEEccccceeeeec
Q 011998 167 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL--EALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 167 ~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~--~~~~dv~~ld~~~~~w~~~~~ 235 (473)
+||+.+++|+.+.+ .|.+|.+|+++.+ +++|||+||.+... ..++++++||+.+.+|..+..
T Consensus 410 ~yd~~t~~W~~~~~---~p~~r~~~~~~~~----~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~ 473 (534)
T PHA03098 410 CFSLNTNKWSKGSP---LPISHYGGCAIYH----DGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSS 473 (534)
T ss_pred EEeCCCCeeeecCC---CCccccCceEEEE----CCEEEEECCccCCCCCcccceEEEecCCCCceeeCCC
Confidence 99999999999875 4788988887776 78999999986533 246789999999999987543
No 19
>PHA02790 Kelch-like protein; Provisional
Probab=99.96 E-value=2.1e-27 Score=252.68 Aligned_cols=193 Identities=18% Similarity=0.200 Sum_probs=169.6
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.++++++||+.+++|..+ +++|.+|..+++++++++||++||... .+.+++||+.+++|..++++
T Consensus 285 ~~~~v~~Ydp~~~~W~~~---~~m~~~r~~~~~v~~~~~iYviGG~~~---------~~sve~ydp~~n~W~~~~~l--- 349 (480)
T PHA02790 285 IHNNAIAVNYISNNWIPI---PPMNSPRLYASGVPANNKLYVVGGLPN---------PTSVERWFHGDAAWVNMPSL--- 349 (480)
T ss_pred cCCeEEEEECCCCEEEEC---CCCCchhhcceEEEECCEEEEECCcCC---------CCceEEEECCCCeEEECCCC---
Confidence 467899999999999998 588999999999999999999999631 15689999999999999766
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
|.+|..|++++++++|||+||.++. .+.+++||+.+++|+.+++ |+.+|.+|+++.++++|||+||.
T Consensus 350 ~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~~~~~~IYv~GG~------- 416 (480)
T PHA02790 350 LKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCALVFGRRLFLVGRN------- 416 (480)
T ss_pred CCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEEEECCEEEEECCc-------
Confidence 8999999999999999999998643 3678999999999999987 99999999999999999999984
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeee
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~ 233 (473)
+++||+++++|+.++++ |.+|..++++++ +++||++||.+.. ...+.+..||..+.+|..+
T Consensus 417 --~e~ydp~~~~W~~~~~m---~~~r~~~~~~v~----~~~IYviGG~~~~-~~~~~ve~Yd~~~~~W~~~ 477 (480)
T PHA02790 417 --AEFYCESSNTWTLIDDP---IYPRDNPELIIV----DNKLLLIGGFYRG-SYIDTIEVYNNRTYSWNIW 477 (480)
T ss_pred --eEEecCCCCcEeEcCCC---CCCccccEEEEE----CCEEEEECCcCCC-cccceEEEEECCCCeEEec
Confidence 57899999999998764 678888888776 8999999998753 3468899999999999754
No 20
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=2.7e-28 Score=245.77 Aligned_cols=268 Identities=26% Similarity=0.453 Sum_probs=212.0
Q ss_pred cCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec----C
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT----S 79 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~----~ 79 (473)
.+++++||..+++|....+.|+.|.+-..|.++..+.+||+|||+-+ -..|.||+|-+......|+++.+ .
T Consensus 56 iDELHvYNTatnqWf~PavrGDiPpgcAA~GfvcdGtrilvFGGMvE-----YGkYsNdLYELQasRWeWkrlkp~~p~n 130 (830)
T KOG4152|consen 56 IDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVCDGTRILVFGGMVE-----YGKYSNDLYELQASRWEWKRLKPKTPKN 130 (830)
T ss_pred hhhhhhhccccceeecchhcCCCCCchhhcceEecCceEEEEccEee-----eccccchHHHhhhhhhhHhhcCCCCCCC
Confidence 46789999999999999999999999999999999999999999843 34578999988888889998864 4
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCCCCC--------CCccceEEEEECCCC----CEEEeeCCCCCCCCcceeEEEEE--
Q 011998 80 GNPPSARDSHTCSSWKNKIIVIGGEDGH--------DYYLSDVHILDTDTL----TWKELNTSGMVLSPRAGHSTVAF-- 145 (473)
Q Consensus 80 g~~P~~R~~hs~~~~~~~IyV~GG~~~~--------~~~~ndv~~yD~~t~----~W~~l~~~g~~p~~R~~hs~~~~-- 145 (473)
|.+|.||-+|+.+.++++.|+|||..+. -.+++|+|++++.-. .|...-..|.+|.+|..|+++.+
T Consensus 131 G~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrYLnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~e 210 (830)
T KOG4152|consen 131 GPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRYLNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTE 210 (830)
T ss_pred CCCCCCccCceeEEeccEeEEeccccccccCcccccchhhcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEe
Confidence 7789999999999999999999997421 247999999998744 49998888999999999999988
Q ss_pred ----CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC----------
Q 011998 146 ----GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN---------- 211 (473)
Q Consensus 146 ----~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~---------- 211 (473)
..++|||||++ +..+.|+|.+|+++..|.+.+..|..|.+|..|++..+ +++||||||+-
T Consensus 211 KDs~~skmvvyGGM~--G~RLgDLW~Ldl~Tl~W~kp~~~G~~PlPRSLHsa~~I----GnKMyvfGGWVPl~~~~~~~~ 284 (830)
T KOG4152|consen 211 KDSKKSKMVVYGGMS--GCRLGDLWTLDLDTLTWNKPSLSGVAPLPRSLHSATTI----GNKMYVFGGWVPLVMDDVKVA 284 (830)
T ss_pred ccCCcceEEEEcccc--cccccceeEEecceeecccccccCCCCCCcccccceee----cceeEEecceeeeeccccccc
Confidence 23599999984 56789999999999999999999999999999999987 89999999962
Q ss_pred ---CCCCccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCcccccccCC
Q 011998 212 ---KSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLN 288 (473)
Q Consensus 212 ---~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~~~~~~~ 288 (473)
.+..+.+.+-++++.+.+|..+- ..+.+....|+. +.||.+..+.++ +||..|..--.-..+
T Consensus 285 ~hekEWkCTssl~clNldt~~W~tl~---------~d~~ed~tiPR~-----RAGHCAvAigtR-lYiWSGRDGYrKAwn 349 (830)
T KOG4152|consen 285 THEKEWKCTSSLACLNLDTMAWETLL---------MDTLEDNTIPRA-----RAGHCAVAIGTR-LYIWSGRDGYRKAWN 349 (830)
T ss_pred cccceeeeccceeeeeecchheeeee---------eccccccccccc-----cccceeEEeccE-EEEEeccchhhHhhc
Confidence 22346677778888888887542 233333322322 556666555554 888877543332222
Q ss_pred C---CccceEee
Q 011998 289 E---GKKTFQAK 297 (473)
Q Consensus 289 ~---~~k~f~~~ 297 (473)
. =+|||.++
T Consensus 350 nQVCCkDlWyLd 361 (830)
T KOG4152|consen 350 NQVCCKDLWYLD 361 (830)
T ss_pred cccchhhhhhhc
Confidence 2 26666654
No 21
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.95 E-value=2.3e-26 Score=237.53 Aligned_cols=215 Identities=23% Similarity=0.336 Sum_probs=158.8
Q ss_pred CcEEEEECC--CCeEEecccCCCCC-CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 5 RDLHILDTS--SHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~--t~~W~~l~~~~~~P-~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
+.+++||+. +++|..+. ++| .+|.+|+++.++++|||+||............++++|+||+.+++|++++..
T Consensus 50 ~~~~~~d~~~~~~~W~~l~---~~p~~~r~~~~~v~~~~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~-- 124 (376)
T PRK14131 50 TSWYKLDLNAPSKGWTKIA---AFPGGPREQAVAAFIDGKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTR-- 124 (376)
T ss_pred CeEEEEECCCCCCCeEECC---cCCCCCcccceEEEECCEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCC--
Confidence 457899986 47899883 555 5899999999999999999975311111134678999999999999998742
Q ss_pred CCCCceeeEEEE-ECCEEEEEeCCCCCC---------------------------------CccceEEEEECCCCCEEEe
Q 011998 82 PPSARDSHTCSS-WKNKIIVIGGEDGHD---------------------------------YYLSDVHILDTDTLTWKEL 127 (473)
Q Consensus 82 ~P~~R~~hs~~~-~~~~IyV~GG~~~~~---------------------------------~~~ndv~~yD~~t~~W~~l 127 (473)
.|.+|.+|++++ .+++|||+||.+... ..++++++||+.+++|+.+
T Consensus 125 ~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~v~~YD~~t~~W~~~ 204 (376)
T PRK14131 125 SPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKKPEDYFFNKEVLSYDPSTNQWKNA 204 (376)
T ss_pred CCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCChhhcCcCceEEEEECCCCeeeEC
Confidence 477788888877 799999999985310 1257899999999999998
Q ss_pred eCCCCCCC-CcceeEEEEECCEEEEEecccCCCCccccEEE--EeCCCCcEEEEeeCCCCCCCcc--------eeeEEEe
Q 011998 128 NTSGMVLS-PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYM--IDVDSGLWTKVITTGEGPSARF--------SVAGDCL 196 (473)
Q Consensus 128 ~~~g~~p~-~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~--yd~~t~~W~~v~~~g~~P~~R~--------~~~a~~~ 196 (473)
.+ +|. +|.+|+++.++++|||+||.........+++. ||+++++|+.+..+ |.+|. .+.++++
T Consensus 205 ~~---~p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~~---p~~~~~~~~~~~~~~~a~~~ 278 (376)
T PRK14131 205 GE---SPFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPDL---PPAPGGSSQEGVAGAFAGYS 278 (376)
T ss_pred Cc---CCCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCCC---CCCCcCCcCCccceEeceeE
Confidence 75 775 78899999999999999997544334455554 56788999998865 33332 2223333
Q ss_pred ccccCCEEEEEcccCCCCC-------------cc---CcEEEEEccccceeeee
Q 011998 197 DPLKGGVLVFIGGCNKSLE-------------AL---DDMYYLYTGLVNERKLE 234 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~~~~-------------~~---~dv~~ld~~~~~w~~~~ 234 (473)
+++|||+||.+.... .+ ..+.+||+.+.+|+.+.
T Consensus 279 ----~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~ 328 (376)
T PRK14131 279 ----NGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVG 328 (376)
T ss_pred ----CCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccC
Confidence 789999999763211 11 23557888888887554
No 22
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=99.95 E-value=1.2e-25 Score=227.38 Aligned_cols=192 Identities=19% Similarity=0.276 Sum_probs=154.0
Q ss_pred CcccceEEEEECCEEEEEecCCCCCC----CCCceeeCeEEEEECCC--CeEEEeecCCCCCCCceeeEEEEECCEEEEE
Q 011998 28 EAREGHSAALVGKRLFIFGGCGKSSN----TNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKIIVI 101 (473)
Q Consensus 28 ~~R~~hsa~~~~~~Iyv~GG~~~~~~----~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~ 101 (473)
..+.++.++++++.|||+||.+.... ......++++|+|+... .+|..+..+ |.+|..|++++++++||++
T Consensus 2 ~~~~g~~~~~~~~~l~v~GG~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~~W~~~~~l---p~~r~~~~~~~~~~~lyvi 78 (323)
T TIGR03548 2 LGVAGCYAGIIGDYILVAGGCNFPEDPLAEGGKKKNYKGIYIAKDENSNLKWVKDGQL---PYEAAYGASVSVENGIYYI 78 (323)
T ss_pred CceeeEeeeEECCEEEEeeccCCCCCchhhCCcEEeeeeeEEEecCCCceeEEEcccC---CccccceEEEEECCEEEEE
Confidence 35778999999999999999854321 22346788999996332 379888654 8899888889999999999
Q ss_pred eCCCCCCCccceEEEEECCCCCE----EEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 102 GGEDGHDYYLSDVHILDTDTLTW----KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 102 GG~~~~~~~~ndv~~yD~~t~~W----~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
||.++.. .++++|+||+.+++| +.++ .+|.+|..|++++++++|||+||.. .....+++++||+.+++|++
T Consensus 79 GG~~~~~-~~~~v~~~d~~~~~w~~~~~~~~---~lp~~~~~~~~~~~~~~iYv~GG~~-~~~~~~~v~~yd~~~~~W~~ 153 (323)
T TIGR03548 79 GGSNSSE-RFSSVYRITLDESKEELICETIG---NLPFTFENGSACYKDGTLYVGGGNR-NGKPSNKSYLFNLETQEWFE 153 (323)
T ss_pred cCCCCCC-CceeEEEEEEcCCceeeeeeEcC---CCCcCccCceEEEECCEEEEEeCcC-CCccCceEEEEcCCCCCeeE
Confidence 9987654 689999999999998 4444 4899999999999999999999974 34457999999999999999
Q ss_pred EeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 178 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 178 v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
+..+. ..+|..++++.+ +++|||+||.+.. ...|+++||+.+.+|..+..
T Consensus 154 ~~~~p--~~~r~~~~~~~~----~~~iYv~GG~~~~--~~~~~~~yd~~~~~W~~~~~ 203 (323)
T TIGR03548 154 LPDFP--GEPRVQPVCVKL----QNELYVFGGGSNI--AYTDGYKYSPKKNQWQKVAD 203 (323)
T ss_pred CCCCC--CCCCCcceEEEE----CCEEEEEcCCCCc--cccceEEEecCCCeeEECCC
Confidence 87531 236877776665 7899999998653 35689999999999986543
No 23
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=99.95 E-value=5e-26 Score=232.29 Aligned_cols=207 Identities=21% Similarity=0.287 Sum_probs=160.2
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEE-EECCEEEEEecCCCCCC----------------------------
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSN---------------------------- 53 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~-~~~~~Iyv~GG~~~~~~---------------------------- 53 (473)
.++++++||+.+++|+++. ..+|.+|.+|+++ +++++||++||......
T Consensus 83 ~~~~v~~Yd~~~~~W~~~~--~~~p~~~~~~~~~~~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 160 (346)
T TIGR03547 83 VFDDVYRYDPKKNSWQKLD--TRSPVGLLGASGFSLHNGQAYFTGGVNKNIFDGYFADLSAADKDSEPKDKLIAAYFSQP 160 (346)
T ss_pred ecccEEEEECCCCEEecCC--CCCCCcccceeEEEEeCCEEEEEcCcChHHHHHHHhhHhhcCccchhhhhhHHHHhCCC
Confidence 4789999999999999985 2467778888877 78999999999742100
Q ss_pred CCCceeeCeEEEEECCCCeEEEeecCCCCCC-CceeeEEEEECCEEEEEeCCCCCCCccceEEEEE--CCCCCEEEeeCC
Q 011998 54 TNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD--TDTLTWKELNTS 130 (473)
Q Consensus 54 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD--~~t~~W~~l~~~ 130 (473)
......++++++||+.+++|+.++++ |. +|..|++++++++|||+||.........+++.|| +.+++|+.+++
T Consensus 161 ~~~~~~~~~v~~YDp~t~~W~~~~~~---p~~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~y~~~~~~~~W~~~~~- 236 (346)
T TIGR03547 161 PEDYFWNKNVLSYDPSTNQWRNLGEN---PFLGTAGSAIVHKGNKLLLINGEIKPGLRTAEVKQYLFTGGKLEWNKLPP- 236 (346)
T ss_pred hhHcCccceEEEEECCCCceeECccC---CCCcCCCceEEEECCEEEEEeeeeCCCccchheEEEEecCCCceeeecCC-
Confidence 00001247899999999999998655 64 6899999999999999999865543345666665 57789999986
Q ss_pred CCCCCCc-------ceeEEEEECCEEEEEecccCCC----------------CccccEEEEeCCCCcEEEEeeCCCCCCC
Q 011998 131 GMVLSPR-------AGHSTVAFGKNLFVFGGFTDSQ----------------NLYDDLYMIDVDSGLWTKVITTGEGPSA 187 (473)
Q Consensus 131 g~~p~~R-------~~hs~~~~~~~LyV~GG~~~~~----------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~ 187 (473)
||.+| .+|+++.++++|||+||..... .....+++||+++++|+.+.. .|.+
T Consensus 237 --m~~~r~~~~~~~~~~~a~~~~~~Iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~~ 311 (346)
T TIGR03547 237 --LPPPKSSSQEGLAGAFAGISNGVLLVAGGANFPGAQENYKNGKLYAHEGLIKAWSSEVYALDNGKWSKVGK---LPQG 311 (346)
T ss_pred --CCCCCCCccccccEEeeeEECCEEEEeecCCCCCchhhhhcCCccccCCCCceeEeeEEEecCCcccccCC---CCCC
Confidence 66554 4666788999999999974211 012468999999999999876 4778
Q ss_pred cceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEE
Q 011998 188 RFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 224 (473)
Q Consensus 188 R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld 224 (473)
|..++++.+ +++|||+||.+.....+++++.+-
T Consensus 312 ~~~~~~~~~----~~~iyv~GG~~~~~~~~~~v~~~~ 344 (346)
T TIGR03547 312 LAYGVSVSW----NNGVLLIGGENSGGKAVTDVYLLS 344 (346)
T ss_pred ceeeEEEEc----CCEEEEEeccCCCCCEeeeEEEEE
Confidence 887776655 899999999988888999998764
No 24
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=99.94 E-value=2.2e-25 Score=230.33 Aligned_cols=212 Identities=20% Similarity=0.242 Sum_probs=161.1
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEE-ECCEEEEEecCCCCCC----------------------------
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSN---------------------------- 53 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~---------------------------- 53 (473)
.++++++||+.+++|+.+.. ..|.+|.+|++++ .+++||++||......
T Consensus 104 ~~~~v~~YD~~~n~W~~~~~--~~p~~~~~~~~~~~~~~~IYv~GG~~~~~~~~~~~d~~~~~~~~~~~~~i~~~~~~~~ 181 (376)
T PRK14131 104 VFDDVYKYDPKTNSWQKLDT--RSPVGLAGHVAVSLHNGKAYITGGVNKNIFDGYFEDLAAAGKDKTPKDKINDAYFDKK 181 (376)
T ss_pred EcccEEEEeCCCCEEEeCCC--CCCCcccceEEEEeeCCEEEEECCCCHHHHHHHHhhhhhcccchhhhhhhHHHHhcCC
Confidence 36899999999999999852 3477788888877 8999999999742100
Q ss_pred CCCceeeCeEEEEECCCCeEEEeecCCCCCC-CceeeEEEEECCEEEEEeCCCCCCCccceEE--EEECCCCCEEEeeCC
Q 011998 54 TNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH--ILDTDTLTWKELNTS 130 (473)
Q Consensus 54 ~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~--~yD~~t~~W~~l~~~ 130 (473)
.......+++++||+.+++|+.+.++ |. +|.+|+++.++++|||+||.........++| .||+++++|..++.
T Consensus 182 ~~~~~~~~~v~~YD~~t~~W~~~~~~---p~~~~~~~a~v~~~~~iYv~GG~~~~~~~~~~~~~~~~~~~~~~W~~~~~- 257 (376)
T PRK14131 182 PEDYFFNKEVLSYDPSTNQWKNAGES---PFLGTAGSAVVIKGNKLWLINGEIKPGLRTDAVKQGKFTGNNLKWQKLPD- 257 (376)
T ss_pred hhhcCcCceEEEEECCCCeeeECCcC---CCCCCCcceEEEECCEEEEEeeeECCCcCChhheEEEecCCCcceeecCC-
Confidence 00011357899999999999998654 64 7888999999999999999865543445555 45778999999986
Q ss_pred CCCCCCcc--------eeEEEEECCEEEEEecccCCCC----------------ccccEEEEeCCCCcEEEEeeCCCCCC
Q 011998 131 GMVLSPRA--------GHSTVAFGKNLFVFGGFTDSQN----------------LYDDLYMIDVDSGLWTKVITTGEGPS 186 (473)
Q Consensus 131 g~~p~~R~--------~hs~~~~~~~LyV~GG~~~~~~----------------~~ndv~~yd~~t~~W~~v~~~g~~P~ 186 (473)
+|.+|. ++.+++++++|||+||...... ....+++||+++++|+.+.. .|.
T Consensus 258 --~p~~~~~~~~~~~~~~~a~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~e~yd~~~~~W~~~~~---lp~ 332 (376)
T PRK14131 258 --LPPAPGGSSQEGVAGAFAGYSNGVLLVAGGANFPGARENYQNGKLYAHEGLKKSWSDEIYALVNGKWQKVGE---LPQ 332 (376)
T ss_pred --CCCCCcCCcCCccceEeceeECCEEEEeeccCCCCChhhhhcCCcccccCCcceeehheEEecCCcccccCc---CCC
Confidence 666653 2335778999999999753210 11347799999999998865 578
Q ss_pred CcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 187 ARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 187 ~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
+|..++++.+ +++|||+||.......+++++.|......
T Consensus 333 ~r~~~~av~~----~~~iyv~GG~~~~~~~~~~v~~~~~~~~~ 371 (376)
T PRK14131 333 GLAYGVSVSW----NNGVLLIGGETAGGKAVSDVTLLSWDGKK 371 (376)
T ss_pred CccceEEEEe----CCEEEEEcCCCCCCcEeeeEEEEEEcCCE
Confidence 8888876665 89999999987766789999999876543
No 25
>KOG4152 consensus Host cell transcription factor HCFC1 [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.93 E-value=8.6e-26 Score=227.78 Aligned_cols=238 Identities=26% Similarity=0.411 Sum_probs=199.5
Q ss_pred CeEEeccc-CCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE
Q 011998 15 HTWISPSV-RGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 93 (473)
Q Consensus 15 ~~W~~l~~-~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~ 93 (473)
-+|+.++. .|+.|.+|.+|-++++...|+||||- ++...+++.+||..+++|.....-|+.|.+...|..+.
T Consensus 17 ~rWrrV~~~tGPvPrpRHGHRAVaikELiviFGGG-------NEGiiDELHvYNTatnqWf~PavrGDiPpgcAA~Gfvc 89 (830)
T KOG4152|consen 17 VRWRRVQQSTGPVPRPRHGHRAVAIKELIVIFGGG-------NEGIIDELHVYNTATNQWFAPAVRGDIPPGCAAFGFVC 89 (830)
T ss_pred cceEEEecccCCCCCccccchheeeeeeEEEecCC-------cccchhhhhhhccccceeecchhcCCCCCchhhcceEe
Confidence 47998764 46789999999999999999999995 33467899999999999998888899999999999999
Q ss_pred ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC----CCCCCCCcceeEEEEECCEEEEEecccCCC--------Cc
Q 011998 94 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT----SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ--------NL 161 (473)
Q Consensus 94 ~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~----~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~--------~~ 161 (473)
.+.+||+|||....+.+.||+|.+....-.|+++.+ .|.+|.||.+|+..+.+++.|+|||...+. .+
T Consensus 90 dGtrilvFGGMvEYGkYsNdLYELQasRWeWkrlkp~~p~nG~pPCPRlGHSFsl~gnKcYlFGGLaNdseDpknNvPrY 169 (830)
T KOG4152|consen 90 DGTRILVFGGMVEYGKYSNDLYELQASRWEWKRLKPKTPKNGPPPCPRLGHSFSLVGNKCYLFGGLANDSEDPKNNVPRY 169 (830)
T ss_pred cCceEEEEccEeeeccccchHHHhhhhhhhHhhcCCCCCCCCCCCCCccCceeEEeccEeEEeccccccccCcccccchh
Confidence 999999999999988999999999888888988865 577899999999999999999999984321 37
Q ss_pred cccEEEEeCCCC----cEEEEeeCCCCCCCcceeeEEEeccc--cCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 162 YDDLYMIDVDSG----LWTKVITTGEGPSARFSVAGDCLDPL--KGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 162 ~ndv~~yd~~t~----~W~~v~~~g~~P~~R~~~~a~~~~~~--~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
+||+|++++.-+ .|......|..|.+|-+|.++++... ...+||||||.++ ..++|+|.+|++++.|.+..
T Consensus 170 LnDlY~leL~~Gsgvv~W~ip~t~Gv~P~pRESHTAViY~eKDs~~skmvvyGGM~G--~RLgDLW~Ldl~Tl~W~kp~- 246 (830)
T KOG4152|consen 170 LNDLYILELRPGSGVVAWDIPITYGVLPPPRESHTAVIYTEKDSKKSKMVVYGGMSG--CRLGDLWTLDLDTLTWNKPS- 246 (830)
T ss_pred hcceEEEEeccCCceEEEecccccCCCCCCcccceeEEEEeccCCcceEEEEccccc--ccccceeEEecceeeccccc-
Confidence 999999999854 59999999999999999999988332 2458999999886 48999999999999997543
Q ss_pred cchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCc
Q 011998 236 LSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEP 280 (473)
Q Consensus 236 l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~ 280 (473)
..+-.+.|+..+....+|. ++|||||-
T Consensus 247 ----------~~G~~PlPRSLHsa~~IGn--------KMyvfGGW 273 (830)
T KOG4152|consen 247 ----------LSGVAPLPRSLHSATTIGN--------KMYVFGGW 273 (830)
T ss_pred ----------ccCCCCCCcccccceeecc--------eeEEecce
Confidence 2244455666666666654 38888884
No 26
>PHA02790 Kelch-like protein; Provisional
Probab=99.92 E-value=1.2e-23 Score=223.89 Aligned_cols=190 Identities=17% Similarity=0.263 Sum_probs=153.2
Q ss_pred EEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceE
Q 011998 35 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 35 a~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv 114 (473)
++.+++.||++||... ....+.+++||+.+++|..++++ |.+|..|++++++++||++||.++. +.+
T Consensus 267 ~~~~~~~lyviGG~~~------~~~~~~v~~Ydp~~~~W~~~~~m---~~~r~~~~~v~~~~~iYviGG~~~~----~sv 333 (480)
T PHA02790 267 STHVGEVVYLIGGWMN------NEIHNNAIAVNYISNNWIPIPPM---NSPRLYASGVPANNKLYVVGGLPNP----TSV 333 (480)
T ss_pred eEEECCEEEEEcCCCC------CCcCCeEEEEECCCCEEEECCCC---CchhhcceEEEECCEEEEECCcCCC----Cce
Confidence 3458999999999632 23567899999999999999776 8899999999999999999997532 568
Q ss_pred EEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEE
Q 011998 115 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 194 (473)
Q Consensus 115 ~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~ 194 (473)
++||+.+++|..+++ ||.+|.+|+++.++++||++||.... .+.+++||+.+++|+.+++ .|.+|..++++
T Consensus 334 e~ydp~~n~W~~~~~---l~~~r~~~~~~~~~g~IYviGG~~~~---~~~ve~ydp~~~~W~~~~~---m~~~r~~~~~~ 404 (480)
T PHA02790 334 ERWFHGDAAWVNMPS---LLKPRCNPAVASINNVIYVIGGHSET---DTTTEYLLPNHDQWQFGPS---TYYPHYKSCAL 404 (480)
T ss_pred EEEECCCCeEEECCC---CCCCCcccEEEEECCEEEEecCcCCC---CccEEEEeCCCCEEEeCCC---CCCccccceEE
Confidence 999999999999986 99999999999999999999998432 3679999999999999876 46788888887
Q ss_pred EeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceEEEcceecccCCccE
Q 011998 195 CLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPL 274 (473)
Q Consensus 195 ~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~i 274 (473)
++ +++||++||. +.+||..+.+|..+..+. .++.....+..+ ++|
T Consensus 405 ~~----~~~IYv~GG~---------~e~ydp~~~~W~~~~~m~--------------~~r~~~~~~v~~--------~~I 449 (480)
T PHA02790 405 VF----GRRLFLVGRN---------AEFYCESSNTWTLIDDPI--------------YPRDNPELIIVD--------NKL 449 (480)
T ss_pred EE----CCEEEEECCc---------eEEecCCCCcEeEcCCCC--------------CCccccEEEEEC--------CEE
Confidence 76 8999999983 456888888897655432 122333333333 359
Q ss_pred EEECCcc
Q 011998 275 LSYGEPR 281 (473)
Q Consensus 275 li~GG~~ 281 (473)
+++||.+
T Consensus 450 YviGG~~ 456 (480)
T PHA02790 450 LLIGGFY 456 (480)
T ss_pred EEECCcC
Confidence 9999965
No 27
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.64 E-value=9.1e-15 Score=143.95 Aligned_cols=249 Identities=21% Similarity=0.304 Sum_probs=173.3
Q ss_pred cEEEEECCC--CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSS--HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t--~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..|.+|+.. ..|+++.. -+-.+|.+..+++++++||+|||.+.... ..-..++|+|+||+.+++|.++.+. .|
T Consensus 59 afy~ldL~~~~k~W~~~a~--FpG~~rnqa~~a~~~~kLyvFgG~Gk~~~-~~~~~~nd~Y~y~p~~nsW~kl~t~--sP 133 (381)
T COG3055 59 AFYVLDLKKPGKGWTKIAD--FPGGARNQAVAAVIGGKLYVFGGYGKSVS-SSPQVFNDAYRYDPSTNSWHKLDTR--SP 133 (381)
T ss_pred cceehhhhcCCCCceEccc--CCCcccccchheeeCCeEEEeeccccCCC-CCceEeeeeEEecCCCChhheeccc--cc
Confidence 456666653 57998842 34467999999999999999999977654 4567789999999999999999875 47
Q ss_pred CCceeeEEEEECC-EEEEEeCCCC---------------------------------CCCccceEEEEECCCCCEEEeeC
Q 011998 84 SARDSHTCSSWKN-KIIVIGGEDG---------------------------------HDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 84 ~~R~~hs~~~~~~-~IyV~GG~~~---------------------------------~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
....+|+++.+++ +||++||.+. ...+..+++.|++.+++|+.+-.
T Consensus 134 ~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~ 213 (381)
T COG3055 134 TGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDKEAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGE 213 (381)
T ss_pred cccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccHHHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCc
Confidence 7788999999976 9999999741 01235679999999999998864
Q ss_pred CCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCC--CCcEEEEeeCCCCCC-CcceeeEEEeccccCCEEEE
Q 011998 130 SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD--SGLWTKVITTGEGPS-ARFSVAGDCLDPLKGGVLVF 206 (473)
Q Consensus 130 ~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~--t~~W~~v~~~g~~P~-~R~~~~a~~~~~~~~~~l~v 206 (473)
.+-.++++++.+.-++++.++-|.-..+-.+..+++++.. ..+|..+........ ..-+.+++. .-..++.+++
T Consensus 214 --~pf~~~aGsa~~~~~n~~~lInGEiKpGLRt~~~k~~~~~~~~~~w~~l~~lp~~~~~~~eGvAGaf-~G~s~~~~lv 290 (381)
T COG3055 214 --NPFYGNAGSAVVIKGNKLTLINGEIKPGLRTAEVKQADFGGDNLKWLKLSDLPAPIGSNKEGVAGAF-SGKSNGEVLV 290 (381)
T ss_pred --CcccCccCcceeecCCeEEEEcceecCCccccceeEEEeccCceeeeeccCCCCCCCCCccccceec-cceeCCeEEE
Confidence 2346788866666677798888876666677788888876 458998865321111 112223222 2335789999
Q ss_pred EcccCCCC------------------CccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceEEEcceecc
Q 011998 207 IGGCNKSL------------------EALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDV 268 (473)
Q Consensus 207 ~GG~~~~~------------------~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~ 268 (473)
.||.+... ..-++||.|| ...|+..-+|+.. + .+| ..+
T Consensus 291 ~GGAnF~Ga~~~y~~Gk~~AH~Gl~K~w~~~Vy~~d--~g~Wk~~GeLp~~--l------------------~YG--~s~ 346 (381)
T COG3055 291 AGGANFPGALKAYKNGKFYAHEGLSKSWNSEVYIFD--NGSWKIVGELPQG--L------------------AYG--VSL 346 (381)
T ss_pred ecCCCChhHHHHHHhcccccccchhhhhhceEEEEc--CCceeeecccCCC--c------------------cce--EEE
Confidence 99965321 2456889998 5567766655441 1 122 223
Q ss_pred cCCccEEEECCccccccc
Q 011998 269 HQPTPLLSYGEPRRNNFP 286 (473)
Q Consensus 269 ~~~~~ili~GG~~~~~~~ 286 (473)
..++.||++||.....-.
T Consensus 347 ~~nn~vl~IGGE~~~Gka 364 (381)
T COG3055 347 SYNNKVLLIGGETSGGKA 364 (381)
T ss_pred ecCCcEEEEccccCCCee
Confidence 445569999997654443
No 28
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.61 E-value=4.4e-16 Score=157.82 Aligned_cols=283 Identities=16% Similarity=0.192 Sum_probs=190.2
Q ss_pred CCCeEEecccCC-------CCCCcccceEEEEECC--EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 13 SSHTWISPSVRG-------EGPEAREGHSAALVGK--RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 13 ~t~~W~~l~~~~-------~~P~~R~~hsa~~~~~--~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+-.|.+..... ..|..|.||.++...+ .||++||++ +-.-+.|.|.|+...+.|..+...+..|
T Consensus 237 y~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWd------G~~~l~DFW~Y~v~e~~W~~iN~~t~~P 310 (723)
T KOG2437|consen 237 YKPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWD------GTQDLADFWAYSVKENQWTCINRDTEGP 310 (723)
T ss_pred ccccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcc------cchhHHHHHhhcCCcceeEEeecCCCCC
Confidence 356788776544 5699999999999875 999999985 3345789999999999999999877789
Q ss_pred CCceeeEEEEECC--EEEEEeCCCCCC-----CccceEEEEECCCCCEEEeeCC---CCCCCCcceeEEEEECCE--EEE
Q 011998 84 SARDSHTCSSWKN--KIIVIGGEDGHD-----YYLSDVHILDTDTLTWKELNTS---GMVLSPRAGHSTVAFGKN--LFV 151 (473)
Q Consensus 84 ~~R~~hs~~~~~~--~IyV~GG~~~~~-----~~~ndv~~yD~~t~~W~~l~~~---g~~p~~R~~hs~~~~~~~--LyV 151 (473)
..|.+|.|+..-. ++|++|-+-+.. ..-+|+|+||..++.|..+.-. ..-|...+.|.+++.+++ |||
T Consensus 311 G~RsCHRMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~~k~~iyV 390 (723)
T KOG2437|consen 311 GARSCHRMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDSEKHMIYV 390 (723)
T ss_pred cchhhhhhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEecCcceEEE
Confidence 9999999998854 999999874322 2357899999999999988642 124778899999999988 999
Q ss_pred EecccC--CCCccccEEEEeCCCCcEEEEeeCC-------CCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEE
Q 011998 152 FGGFTD--SQNLYDDLYMIDVDSGLWTKVITTG-------EGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYY 222 (473)
Q Consensus 152 ~GG~~~--~~~~~ndv~~yd~~t~~W~~v~~~g-------~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ 222 (473)
|||..- +...+..+|.||.....|..+...- .....|.+|++-... .++.+|+|||..... .++=.+.
T Consensus 391 fGGr~~~~~e~~f~GLYaf~~~~~~w~~l~e~~~~~~~vvE~~~sR~ghcmE~~~--~n~~ly~fggq~s~~-El~L~f~ 467 (723)
T KOG2437|consen 391 FGGRILTCNEPQFSGLYAFNCQCQTWKLLREDSCNAGPVVEDIQSRIGHCMEFHS--KNRCLYVFGGQRSKT-ELNLFFS 467 (723)
T ss_pred ecCeeccCCCccccceEEEecCCccHHHHHHHHhhcCcchhHHHHHHHHHHHhcC--CCCeEEeccCcccce-EEeehhc
Confidence 999843 2245788999999999998775321 123457777765442 477899999987643 3333333
Q ss_pred EEcccccee---eee--ccchhhhccccccccccccCCCcceEEEcceeccc-------CCccEEEECCcccccccCCCC
Q 011998 223 LYTGLVNER---KLE--KLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVH-------QPTPLLSYGEPRRNNFPLNEG 290 (473)
Q Consensus 223 ld~~~~~w~---~~~--~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~-------~~~~ili~GG~~~~~~~~~~~ 290 (473)
|++....-. ... .-++.+ ..+-++.....|.......++|++.... ++-.|+++|..+|+.+. .
T Consensus 468 y~I~~E~~~~~s~~~k~dsS~~p-S~~f~qRs~~dp~~~~i~~~~G~~~~~~~~e~~~rns~wi~~i~~~~w~cI~---~ 543 (723)
T KOG2437|consen 468 YDIDSEHVDIISDGTKKDSSMVP-STGFTQRATIDPELNEIHVLSGLSKDKEKREENVRNSFWIYDIVRNSWSCIY---K 543 (723)
T ss_pred ceeccccchhhhccCcCccccCC-CcchhhhcccCCCCcchhhhcccchhccCccccccCcEEEEEecccchhhHh---h
Confidence 333222110 010 011111 1112233333455566667788875333 33447777777888885 1
Q ss_pred ccceEeecccccCCCceE
Q 011998 291 KKTFQAKVTESFPLGYTI 308 (473)
Q Consensus 291 ~k~f~~~vs~i~~~~Y~i 308 (473)
-.-++.+.-.+|+++|.+
T Consensus 544 I~~~~~d~dtvfsvpFp~ 561 (723)
T KOG2437|consen 544 IDQAAKDNDTVFSVPFPT 561 (723)
T ss_pred hHHhhccCCceeeccCCc
Confidence 111223444556666653
No 29
>KOG2437 consensus Muskelin [Signal transduction mechanisms]
Probab=99.47 E-value=4.4e-14 Score=143.50 Aligned_cols=161 Identities=20% Similarity=0.305 Sum_probs=130.4
Q ss_pred CCeEEEeecCC-------CCCCCceeeEEEEEC--CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCccee
Q 011998 70 TFVWKRATTSG-------NPPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 140 (473)
Q Consensus 70 t~~W~~l~~~g-------~~P~~R~~hs~~~~~--~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~h 140 (473)
+..|.+++... ..|..|.+|.|+... ++||++||+++.. -+.|+|.|+...+.|+.+...+..|-.|..|
T Consensus 238 ~~~W~~i~~~~~~~~~~~~~p~~RgGHQMV~~~~~~CiYLYGGWdG~~-~l~DFW~Y~v~e~~W~~iN~~t~~PG~RsCH 316 (723)
T KOG2437|consen 238 KPRWSQIIPKSTKGDGEDNRPGMRGGHQMVIDVQTECVYLYGGWDGTQ-DLADFWAYSVKENQWTCINRDTEGPGARSCH 316 (723)
T ss_pred cccccccCchhhcccccccCccccCcceEEEeCCCcEEEEecCcccch-hHHHHHhhcCCcceeEEeecCCCCCcchhhh
Confidence 55788876543 468999999999885 5999999999986 6899999999999999998877789999999
Q ss_pred EEEEECC--EEEEEecccCCC-----CccccEEEEeCCCCcEEEEeeCC---CCCCCcceeeEEEeccccCCEEEEEccc
Q 011998 141 STVAFGK--NLFVFGGFTDSQ-----NLYDDLYMIDVDSGLWTKVITTG---EGPSARFSVAGDCLDPLKGGVLVFIGGC 210 (473)
Q Consensus 141 s~~~~~~--~LyV~GG~~~~~-----~~~ndv~~yd~~t~~W~~v~~~g---~~P~~R~~~~a~~~~~~~~~~l~v~GG~ 210 (473)
.++.... +||+.|-+-... ..-.|+|+||..++.|.-+.... -.|..-+.|.+++.. ..+.+|||||+
T Consensus 317 RMVid~S~~KLYLlG~Y~~sS~r~~~s~RsDfW~FDi~~~~W~~ls~dt~~dGGP~~vfDHqM~Vd~--~k~~iyVfGGr 394 (723)
T KOG2437|consen 317 RMVIDISRRKLYLLGRYLDSSVRNSKSLRSDFWRFDIDTNTWMLLSEDTAADGGPKLVFDHQMCVDS--EKHMIYVFGGR 394 (723)
T ss_pred hhhhhhhHhHHhhhhhccccccccccccccceEEEecCCceeEEecccccccCCcceeecceeeEec--CcceEEEecCe
Confidence 9998866 799999874321 24578999999999999887442 357778888877652 24459999998
Q ss_pred CCC--CCccCcEEEEEccccceeee
Q 011998 211 NKS--LEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 211 ~~~--~~~~~dv~~ld~~~~~w~~~ 233 (473)
... ...+..+|.|++....|+..
T Consensus 395 ~~~~~e~~f~GLYaf~~~~~~w~~l 419 (723)
T KOG2437|consen 395 ILTCNEPQFSGLYAFNCQCQTWKLL 419 (723)
T ss_pred eccCCCccccceEEEecCCccHHHH
Confidence 543 45789999999999888653
No 30
>COG3055 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.44 E-value=2.5e-12 Score=126.87 Aligned_cols=193 Identities=20% Similarity=0.287 Sum_probs=145.1
Q ss_pred cCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCC--CeEEEeecCCCCCCCceeeEEEEECCEEE
Q 011998 22 VRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSWKNKII 99 (473)
Q Consensus 22 ~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~~~~Iy 99 (473)
+-++.|.+--..+.+.+++.+||-=|.. -...|.+|++. ..|+++... +-.+|....+++++++||
T Consensus 29 ~lPdlPvg~KnG~Ga~ig~~~YVGLGs~----------G~afy~ldL~~~~k~W~~~a~F--pG~~rnqa~~a~~~~kLy 96 (381)
T COG3055 29 QLPDLPVGFKNGAGALIGDTVYVGLGSA----------GTAFYVLDLKKPGKGWTKIADF--PGGARNQAVAAVIGGKLY 96 (381)
T ss_pred cCCCCCccccccccceecceEEEEeccC----------CccceehhhhcCCCCceEcccC--CCcccccchheeeCCeEE
Confidence 3367788777778888899999987731 13567788764 589999765 345788899999999999
Q ss_pred EEeCCCCCC----CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECC-EEEEEecccCCC---------------
Q 011998 100 VIGGEDGHD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTDSQ--------------- 159 (473)
Q Consensus 100 V~GG~~~~~----~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~-~LyV~GG~~~~~--------------- 159 (473)
||||..... ..++|+|+||+.+++|.++.+ ..|....+|+++.+++ +||++||....-
T Consensus 97 vFgG~Gk~~~~~~~~~nd~Y~y~p~~nsW~kl~t--~sP~gl~G~~~~~~~~~~i~f~GGvn~~if~~yf~dv~~a~~d~ 174 (381)
T COG3055 97 VFGGYGKSVSSSPQVFNDAYRYDPSTNSWHKLDT--RSPTGLVGASTFSLNGTKIYFFGGVNQNIFNGYFEDVGAAGKDK 174 (381)
T ss_pred EeeccccCCCCCceEeeeeEEecCCCChhheecc--ccccccccceeEecCCceEEEEccccHHhhhhhHHhhhhhcccH
Confidence 999986443 358999999999999999987 4677889999999988 799999985210
Q ss_pred ------------------CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEE
Q 011998 160 ------------------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMY 221 (473)
Q Consensus 160 ------------------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~ 221 (473)
....+++.|++++++|+.+-..+. .++++ ++++. .++++.++-|.-....+...++
T Consensus 175 ~~~~~i~~~yf~~~~~dy~~n~ev~sy~p~~n~W~~~G~~pf--~~~aG-sa~~~---~~n~~~lInGEiKpGLRt~~~k 248 (381)
T COG3055 175 EAVDKIIAHYFDKKAEDYFFNKEVLSYDPSTNQWRNLGENPF--YGNAG-SAVVI---KGNKLTLINGEIKPGLRTAEVK 248 (381)
T ss_pred HHHHHHHHHHhCCCHHHhcccccccccccccchhhhcCcCcc--cCccC-cceee---cCCeEEEEcceecCCcccccee
Confidence 145679999999999998875322 33444 33443 5788999999887777777777
Q ss_pred EEEcc--ccceeeee
Q 011998 222 YLYTG--LVNERKLE 234 (473)
Q Consensus 222 ~ld~~--~~~w~~~~ 234 (473)
.++.. ..+|..+.
T Consensus 249 ~~~~~~~~~~w~~l~ 263 (381)
T COG3055 249 QADFGGDNLKWLKLS 263 (381)
T ss_pred EEEeccCceeeeecc
Confidence 77664 44555443
No 31
>PF13964 Kelch_6: Kelch motif
Probab=99.14 E-value=1.1e-10 Score=84.98 Aligned_cols=50 Identities=36% Similarity=0.569 Sum_probs=46.2
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 137 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R 137 (473)
||.+|++++++++|||+||.......++++++||+++++|+++++ ||.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~---mp~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNSGKYSNDVERYDPETNTWEQLPP---MPTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCCCCccccEEEEcCCCCcEEECCC---CCCCC
Confidence 689999999999999999998866689999999999999999986 88887
No 32
>PF13964 Kelch_6: Kelch motif
Probab=99.02 E-value=6e-10 Score=81.10 Aligned_cols=50 Identities=38% Similarity=0.729 Sum_probs=43.6
Q ss_pred cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCc
Q 011998 29 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 86 (473)
Q Consensus 29 ~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 86 (473)
||.+|++++++++|||+||.... ...++++++||+++++|++++++ |.||
T Consensus 1 pR~~~s~v~~~~~iyv~GG~~~~-----~~~~~~v~~yd~~t~~W~~~~~m---p~pR 50 (50)
T PF13964_consen 1 PRYGHSAVVVGGKIYVFGGYDNS-----GKYSNDVERYDPETNTWEQLPPM---PTPR 50 (50)
T ss_pred CCccCEEEEECCEEEEECCCCCC-----CCccccEEEEcCCCCcEEECCCC---CCCC
Confidence 68999999999999999997432 55789999999999999999765 7776
No 33
>PLN02772 guanylate kinase
Probab=98.93 E-value=8.4e-09 Score=105.52 Aligned_cols=92 Identities=18% Similarity=0.341 Sum_probs=81.8
Q ss_pred CCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC
Q 011998 132 MVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 132 ~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
.-+.++..|+++.+++++||+||..+.+...+.+++||..+.+|......|..|.+|.+|+++++ .+++|+|++++.
T Consensus 20 ~~~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~---~~~rilv~~~~~ 96 (398)
T PLN02772 20 FGVKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVL---NKDRILVIKKGS 96 (398)
T ss_pred ccCCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEE---CCceEEEEeCCC
Confidence 35669999999999999999999877665889999999999999999999999999999999998 589999999887
Q ss_pred CCCCccCcEEEEEccccc
Q 011998 212 KSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 212 ~~~~~~~dv~~ld~~~~~ 229 (473)
... +++|++...+.-
T Consensus 97 ~~~---~~~w~l~~~t~~ 111 (398)
T PLN02772 97 APD---DSIWFLEVDTPF 111 (398)
T ss_pred CCc---cceEEEEcCCHH
Confidence 653 889999988754
No 34
>PLN02772 guanylate kinase
Probab=98.89 E-value=8.9e-09 Score=105.34 Aligned_cols=88 Identities=24% Similarity=0.334 Sum_probs=77.1
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEEC-CEEEEEecccCCCCc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNL 161 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~-~~LyV~GG~~~~~~~ 161 (473)
..++.+|+++.+++++||+||.++.....+++|+||+.+++|......|..|.||.+|++++++ ++|+|+++... .
T Consensus 22 ~~~~~~~tav~igdk~yv~GG~~d~~~~~~~v~i~D~~t~~W~~P~V~G~~P~~r~GhSa~v~~~~rilv~~~~~~---~ 98 (398)
T PLN02772 22 VKPKNRETSVTIGDKTYVIGGNHEGNTLSIGVQILDKITNNWVSPIVLGTGPKPCKGYSAVVLNKDRILVIKKGSA---P 98 (398)
T ss_pred CCCCCcceeEEECCEEEEEcccCCCccccceEEEEECCCCcEecccccCCCCCCCCcceEEEECCceEEEEeCCCC---C
Confidence 5689999999999999999998886557899999999999999999999999999999999985 78999987633 2
Q ss_pred cccEEEEeCCCC
Q 011998 162 YDDLYMIDVDSG 173 (473)
Q Consensus 162 ~ndv~~yd~~t~ 173 (473)
..++|.+.+.+.
T Consensus 99 ~~~~w~l~~~t~ 110 (398)
T PLN02772 99 DDSIWFLEVDTP 110 (398)
T ss_pred ccceEEEEcCCH
Confidence 377999988764
No 35
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.89 E-value=3.8e-09 Score=76.56 Aligned_cols=48 Identities=38% Similarity=0.654 Sum_probs=42.4
Q ss_pred CCEEEEEeCCC-CCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE
Q 011998 95 KNKIIVIGGED-GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF 145 (473)
Q Consensus 95 ~~~IyV~GG~~-~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~ 145 (473)
+++||||||.+ .....++|+|+||+.+++|+++. .+|.+|++|+++++
T Consensus 1 g~~~~vfGG~~~~~~~~~nd~~~~~~~~~~W~~~~---~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDDDGGTRLNDVWVFDLDTNTWTRIG---DLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCCCCCCEecCEEEEECCCCEEEECC---CCCCCccceEEEEC
Confidence 57899999998 45568999999999999999994 59999999999863
No 36
>PF13415 Kelch_3: Galactose oxidase, central domain
Probab=98.88 E-value=5.6e-09 Score=75.66 Aligned_cols=49 Identities=31% Similarity=0.756 Sum_probs=41.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 94 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 94 (473)
+++||||||+.. .....++++|+||+.+++|+++ +++|.+|.+|+++++
T Consensus 1 g~~~~vfGG~~~----~~~~~~nd~~~~~~~~~~W~~~---~~~P~~R~~h~~~~i 49 (49)
T PF13415_consen 1 GNKLYVFGGYDD----DGGTRLNDVWVFDLDTNTWTRI---GDLPPPRSGHTATVI 49 (49)
T ss_pred CCEEEEECCcCC----CCCCEecCEEEEECCCCEEEEC---CCCCCCccceEEEEC
Confidence 578999999853 2456789999999999999998 556999999999874
No 37
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.85 E-value=4.1e-09 Score=75.44 Aligned_cols=45 Identities=40% Similarity=0.623 Sum_probs=41.7
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
||.+|++++++++|||+||.+.....++++++||+.+++|+.+++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~ 45 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPP 45 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCC
Confidence 689999999999999999999866789999999999999999986
No 38
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.84 E-value=3e-09 Score=77.00 Aligned_cols=45 Identities=38% Similarity=0.596 Sum_probs=31.6
Q ss_pred CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 85 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 85 ~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
||++|+++.+ +++||||||.+.....++++|+||+++++|++++.
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDSSGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE-TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCCCCcccCCEEEEECCCCEEEECCC
Confidence 6999999999 59999999998887799999999999999999954
No 39
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.83 E-value=8.7e-09 Score=74.65 Aligned_cols=45 Identities=36% Similarity=0.547 Sum_probs=41.0
Q ss_pred CceeeEEEEECCEEEEEeCC--CCCCCccceEEEEECCCCCEEEeeC
Q 011998 85 ARDSHTCSSWKNKIIVIGGE--DGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~--~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
||++|++++++++||||||. .......+++++||+++++|+++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~~~~~~~~~~~v~~~d~~t~~W~~~~~ 47 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYGTDNGGSSSNDVWVFDTETNQWTELSP 47 (49)
T ss_pred CccceEEEEECCEEEEECCcccCCCCcccceeEEEECCCCEEeecCC
Confidence 68999999999999999999 4555689999999999999999986
No 40
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=98.79 E-value=1.6e-08 Score=73.19 Aligned_cols=48 Identities=33% Similarity=0.697 Sum_probs=41.1
Q ss_pred cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC
Q 011998 29 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 79 (473)
Q Consensus 29 ~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 79 (473)
||++|++++++++||||||.. ........+++++||+++++|+.++++
T Consensus 1 ~r~~hs~~~~~~kiyv~GG~~---~~~~~~~~~~v~~~d~~t~~W~~~~~~ 48 (49)
T PF07646_consen 1 PRYGHSAVVLDGKIYVFGGYG---TDNGGSSSNDVWVFDTETNQWTELSPM 48 (49)
T ss_pred CccceEEEEECCEEEEECCcc---cCCCCcccceeEEEECCCCEEeecCCC
Confidence 699999999999999999981 123456789999999999999999765
No 41
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=98.74 E-value=1.5e-08 Score=73.29 Aligned_cols=45 Identities=36% Similarity=0.687 Sum_probs=29.7
Q ss_pred cccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec
Q 011998 29 AREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 78 (473)
Q Consensus 29 ~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 78 (473)
||++|+++.+ +++||||||... ....++++|+||+.+++|+++++
T Consensus 1 pR~~h~~~~~~~~~i~v~GG~~~-----~~~~~~d~~~~d~~~~~W~~~~~ 46 (49)
T PF13418_consen 1 PRYGHSAVSIGDNSIYVFGGRDS-----SGSPLNDLWIFDIETNTWTRLPS 46 (49)
T ss_dssp --BS-EEEEE-TTEEEEE--EEE------TEE---EEEEETTTTEEEE--S
T ss_pred CcceEEEEEEeCCeEEEECCCCC-----CCcccCCEEEEECCCCEEEECCC
Confidence 6999999999 489999999843 23689999999999999999944
No 42
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=98.72 E-value=2.4e-06 Score=82.57 Aligned_cols=179 Identities=18% Similarity=0.234 Sum_probs=111.8
Q ss_pred CCCcccceEEEEEC------CEEEEEecCCCCCCCCCceeeCeEEEEECCCCe--------EEEeecCCCCCCCceeeEE
Q 011998 26 GPEAREGHSAALVG------KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--------WKRATTSGNPPSARDSHTC 91 (473)
Q Consensus 26 ~P~~R~~hsa~~~~------~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~--------W~~l~~~g~~P~~R~~hs~ 91 (473)
+|..|+-+.+..-+ ...+|+||.. .++...+.+|++...+.. .++....|+.|.+|++|++
T Consensus 19 LPPLR~PAv~~~~~~~~~~~~~YlIHGGrT-----PNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~ 93 (337)
T PF03089_consen 19 LPPLRCPAVCHLSDPSDGEPEQYLIHGGRT-----PNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTI 93 (337)
T ss_pred CCCCCCccEeeecCCCCCCeeeEEecCCcC-----CCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceE
Confidence 46556544333312 3677889974 455677889998665432 2233344889999999999
Q ss_pred EEE----CCEEEEEeCCCCC-------C------CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEec
Q 011998 92 SSW----KNKIIVIGGEDGH-------D------YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 154 (473)
Q Consensus 92 ~~~----~~~IyV~GG~~~~-------~------~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG 154 (473)
.++ +.-+++|||+..- + .+.-.+|..|++-..++.-.. ..+..+.++|.+..-++.+|++||
T Consensus 94 ~vV~SrGKta~VlFGGRSY~P~~qRTTenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvslar~D~VYilGG 172 (337)
T PF03089_consen 94 NVVHSRGKTACVLFGGRSYMPPGQRTTENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLARNDCVYILGG 172 (337)
T ss_pred EEEEECCcEEEEEECCcccCCccccchhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEecCceEEEEcc
Confidence 776 3458999997421 0 123458888888777654432 235668899999999999999999
Q ss_pred ccCCC-CccccEEEEeCCCC---cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCC
Q 011998 155 FTDSQ-NLYDDLYMIDVDSG---LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL 214 (473)
Q Consensus 155 ~~~~~-~~~ndv~~yd~~t~---~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~ 214 (473)
..-.. ..-..++++.++-- -+-.-.. .......+++.+.....+.++|+||+..+.
T Consensus 173 Hsl~sd~Rpp~l~rlkVdLllGSP~vsC~v----l~~glSisSAIvt~~~~~e~iIlGGY~sds 232 (337)
T PF03089_consen 173 HSLESDSRPPRLYRLKVDLLLGSPAVSCTV----LQGGLSISSAIVTQTGPHEYIILGGYQSDS 232 (337)
T ss_pred EEccCCCCCCcEEEEEEeecCCCceeEEEE----CCCCceEeeeeEeecCCCceEEEecccccc
Confidence 85322 22344555533211 1111111 123444555666666778999999987653
No 43
>PF01344 Kelch_1: Kelch motif; InterPro: IPR006652 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding; PDB: 2XN4_A 2WOZ_A 3II7_A 4ASC_A 1U6D_X 1ZGK_A 2FLU_X 2VPJ_A 2DYH_A 1X2R_A ....
Probab=98.70 E-value=4.1e-08 Score=70.19 Aligned_cols=46 Identities=24% Similarity=0.661 Sum_probs=42.1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeC
Q 011998 136 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT 181 (473)
Q Consensus 136 ~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~ 181 (473)
||++|+++.++++|||+||.......++++++||+.+++|+.++++
T Consensus 1 pR~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~m 46 (47)
T PF01344_consen 1 PRSGHAAVVVGNKIYVIGGYDGNNQPTNSVEVYDPETNTWEELPPM 46 (47)
T ss_dssp -BBSEEEEEETTEEEEEEEBESTSSBEEEEEEEETTTTEEEEEEEE
T ss_pred CCccCEEEEECCEEEEEeeecccCceeeeEEEEeCCCCEEEEcCCC
Confidence 6999999999999999999977678999999999999999999874
No 44
>PF13854 Kelch_5: Kelch motif
Probab=98.62 E-value=8.5e-08 Score=67.15 Aligned_cols=41 Identities=32% Similarity=0.549 Sum_probs=36.6
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCC-CCCccceEEEEECCCC
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDG-HDYYLSDVHILDTDTL 122 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~-~~~~~ndv~~yD~~t~ 122 (473)
+|.+|.+|++++++++||||||... ....++|+|+||+.++
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~sf 42 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPSF 42 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCCC
Confidence 3889999999999999999999994 6678999999998763
No 45
>PF13854 Kelch_5: Kelch motif
Probab=98.52 E-value=2.1e-07 Score=65.19 Aligned_cols=40 Identities=43% Similarity=0.940 Sum_probs=36.2
Q ss_pred CCCCcceeEEEEECCEEEEEecccC-CCCccccEEEEeCCC
Q 011998 133 VLSPRAGHSTVAFGKNLFVFGGFTD-SQNLYDDLYMIDVDS 172 (473)
Q Consensus 133 ~p~~R~~hs~~~~~~~LyV~GG~~~-~~~~~ndv~~yd~~t 172 (473)
+|.+|++|+++.++++||||||... ....++++|+||+.+
T Consensus 1 ~P~~R~~hs~~~~~~~iyi~GG~~~~~~~~~~d~~~l~l~s 41 (42)
T PF13854_consen 1 IPSPRYGHSAVVVGNNIYIFGGYSGNNNSYSNDLYVLDLPS 41 (42)
T ss_pred CCCCccceEEEEECCEEEEEcCccCCCCCEECcEEEEECCC
Confidence 4889999999999999999999973 677899999999876
No 46
>smart00612 Kelch Kelch domain.
Probab=98.45 E-value=3.1e-07 Score=64.99 Aligned_cols=47 Identities=36% Similarity=0.663 Sum_probs=41.0
Q ss_pred EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECC
Q 011998 97 KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK 147 (473)
Q Consensus 97 ~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~ 147 (473)
+|||+||.... ..++++++||+.+++|+.+++ ||.+|..|+++.+++
T Consensus 1 ~iyv~GG~~~~-~~~~~v~~yd~~~~~W~~~~~---~~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDGG-QRLKSVEVYDPETNKWTPLPS---MPTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCCC-ceeeeEEEECCCCCeEccCCC---CCCccccceEEEeCC
Confidence 48999998763 468999999999999999886 999999999988764
No 47
>smart00612 Kelch Kelch domain.
Probab=98.28 E-value=1.3e-06 Score=61.74 Aligned_cols=47 Identities=17% Similarity=0.427 Sum_probs=39.0
Q ss_pred EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECC
Q 011998 41 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN 96 (473)
Q Consensus 41 ~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~ 96 (473)
+||++||... ...++++++||+.+++|+.++++ |.+|..|+++++++
T Consensus 1 ~iyv~GG~~~------~~~~~~v~~yd~~~~~W~~~~~~---~~~r~~~~~~~~~g 47 (47)
T smart00612 1 KIYVVGGFDG------GQRLKSVEVYDPETNKWTPLPSM---PTPRSGHGVAVING 47 (47)
T ss_pred CEEEEeCCCC------CceeeeEEEECCCCCeEccCCCC---CCccccceEEEeCC
Confidence 4899999732 34578999999999999998755 89999999988764
No 48
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.21 E-value=3.1e-05 Score=75.06 Aligned_cols=147 Identities=16% Similarity=0.178 Sum_probs=95.5
Q ss_pred EEEEECCCCeEEecccCCCCCCcccceEEE-EECCEEEEEecCCCCCCCCCceeeCeEEEEECCC----CeEEEeecCCC
Q 011998 7 LHILDTSSHTWISPSVRGEGPEAREGHSAA-LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET----FVWKRATTSGN 81 (473)
Q Consensus 7 v~~yD~~t~~W~~l~~~~~~P~~R~~hsa~-~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t----~~W~~l~~~g~ 81 (473)
-..||+.+++++.+.+. .--+|.+.+ .-++++++.||... -...+..|++.+ ..|.+....
T Consensus 48 s~~yD~~tn~~rpl~v~----td~FCSgg~~L~dG~ll~tGG~~~--------G~~~ir~~~p~~~~~~~~w~e~~~~-- 113 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQ----TDTFCSGGAFLPDGRLLQTGGDND--------GNKAIRIFTPCTSDGTCDWTESPND-- 113 (243)
T ss_pred EEEEecCCCcEEeccCC----CCCcccCcCCCCCCCEEEeCCCCc--------cccceEEEecCCCCCCCCceECccc--
Confidence 35799999999988543 333443333 34689999999632 124566777754 679876532
Q ss_pred CCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECC-C-----CCEEEeeCC-CCCCCCcceeEEEEECCEEEEEe
Q 011998 82 PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-T-----LTWKELNTS-GMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 82 ~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~-t-----~~W~~l~~~-g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
+-.+|++.+++.+ +++++|+||..... +.|-+. . ..|..+... ...+...+=+...+-+++||+|+
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~~~t------~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~a 187 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSNNPT------YEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFA 187 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcCCCc------ccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEE
Confidence 5789999999988 89999999987332 223232 1 122222211 12344555566667789999998
Q ss_pred cccCCCCccccEEEEeCCCCcE-EEEeeC
Q 011998 154 GFTDSQNLYDDLYMIDVDSGLW-TKVITT 181 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~~W-~~v~~~ 181 (473)
.. +-.+||..++++ +.++..
T Consensus 188 n~--------~s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 188 NR--------GSIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred cC--------CcEEEeCCCCeEEeeCCCC
Confidence 86 256889999876 555554
No 49
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=98.12 E-value=0.0002 Score=69.49 Aligned_cols=148 Identities=14% Similarity=0.138 Sum_probs=89.0
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCC----CCEEEeeCCCCCCCC
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDT----LTWKELNTSGMVLSP 136 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t----~~W~~l~~~g~~p~~ 136 (473)
.--.||+.+++++.+.... --++.+.+.+ ++++++.||.... ...+..|++.+ ..|.+... .|..+
T Consensus 47 ~s~~yD~~tn~~rpl~v~t----d~FCSgg~~L~dG~ll~tGG~~~G---~~~ir~~~p~~~~~~~~w~e~~~--~m~~~ 117 (243)
T PF07250_consen 47 HSVEYDPNTNTFRPLTVQT----DTFCSGGAFLPDGRLLQTGGDNDG---NKAIRIFTPCTSDGTCDWTESPN--DMQSG 117 (243)
T ss_pred EEEEEecCCCcEEeccCCC----CCcccCcCCCCCCCEEEeCCCCcc---ccceEEEecCCCCCCCCceECcc--cccCC
Confidence 3556899999998876432 2233333333 8999999998653 35566777765 67988765 38899
Q ss_pred cceeEEEEE-CCEEEEEecccCCCCccccEEEEeCC-C-----CcEEEEeeC-CCCCCCcceeeEEEeccccCCEEEEEc
Q 011998 137 RAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVD-S-----GLWTKVITT-GEGPSARFSVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 137 R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~-t-----~~W~~v~~~-g~~P~~R~~~~a~~~~~~~~~~l~v~G 208 (473)
|...+++.+ +++++|+||... ..+.|-+. . ..|..+... ...+..-|-+ ..++ .+++||+++
T Consensus 118 RWYpT~~~L~DG~vlIvGG~~~------~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~-~~ll---PdG~lFi~a 187 (243)
T PF07250_consen 118 RWYPTATTLPDGRVLIVGGSNN------PTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPF-VHLL---PDGNLFIFA 187 (243)
T ss_pred CccccceECCCCCEEEEeCcCC------CcccccCCccCCCCceeeecchhhhccCccccCce-EEEc---CCCCEEEEE
Confidence 999998877 578999999852 12233232 1 122222211 0122223322 2333 489999998
Q ss_pred ccCCCCCccCcEEEEEccccce-eeeecc
Q 011998 209 GCNKSLEALDDMYYLYTGLVNE-RKLEKL 236 (473)
Q Consensus 209 G~~~~~~~~~dv~~ld~~~~~w-~~~~~l 236 (473)
... ..+||....++ .+++.+
T Consensus 188 n~~--------s~i~d~~~n~v~~~lP~l 208 (243)
T PF07250_consen 188 NRG--------SIIYDYKTNTVVRTLPDL 208 (243)
T ss_pred cCC--------cEEEeCCCCeEEeeCCCC
Confidence 743 45667766654 344443
No 50
>PF03089 RAG2: Recombination activating protein 2; InterPro: IPR004321 The variable portion of the genes encoding immunoglobulins and T cell receptors are assembled from component V, D, and J DNA segments by a site-specific recombination reaction termed V(D)J recombination. V(D)J recombination is targeted to specific sites on the chromosome by recombination signal sequences (RSSs) that flank antigen receptor gene segments. The RSS consists of a conserved heptamer (consensus, 5'-CACAGTG-3') and nonamer (consensus, 5'-ACAAAAACC-3') separated by a spacer of either 12 or 23 bp. Efficient recombination occurs between a 12-RSS and a 23-RSS, a restriction known as the 12/23 rule. V(D)J recombination can be divided into two phases, DNA cleavage and DNA joining. DNA cleavage requires two lymphocyte-specific factors, the products of the recombination activating genes, RAG1 and RAG2, which together recognise the RSSs and create double strand breaks at the RSS-coding segment junctions []. RAG-mediated DNA cleavage occurs in a synaptic complex termed the paired complex, which is constituted from two distinct RSS-RAG complexes, a 12-SC and a 23-SC (where SC stands for signal complex). The DNA cleavage reaction involves two distinct enzymatic steps, initial nicking that creates a 3'-OH between a coding segment and its RSS, followed by hairpin formation in which the newly created 3'-OH attacks a phosphodiester bond on the opposite DNA strand. This generates a blunt, 5' phosphorylated signal end containing all of the RSS elements, and a covalently sealed hairpin coding end. The second phase of V(D)J recombination, in which broken DNA fragments are processed and joined, is less well characterised. Signal ends are typically joined precisely to form a signal joint, whereas joining of the coding ends requires the hairpin structure to be opened and typically involves nucleotide addition and deletion before formation of the coding joint. The factors involved in these processes include ubiquitously expressed proteins involved in the repair of DNA double strand breaks by nonhomologous end joining, terminal deoxynucleotidyl transferase, and Artemis protein. In addition to their critical roles in RSS recognition and DNA cleavage, the RAG proteins may perform two distinct types of functions in the postcleavage phase of V(D)J. A structural function has been inferred from the finding that, after DNA cleavage in vitro, the DNA ends remain associated with the RAG proteins in a "four end" complex known as the cleaved signal complex. After release of the coding ends in vitro, and after coding joint formation in vivo, the RAG proteins remain in a stable signal end complex (SEC) containing the two signal ends. These postcleavage complexes may serve as essential scaffolds for the second phase of the reaction, with the RAG proteins acting to organise the DNA processing and joining events. The second type of RAG protein-mediated postcleavage activity is the catalysis of phosphodiester bond hydrolysis and strand transfer reactions. The RAG proteins are capable of opening hairpin coding ends in vitro. The RAG proteins also show 3' flap endonuclease activity that may contribute to coding end processing/joining and can utilise the 3' OH group on the signal ends to attack hairpin coding ends (forming hybrid or open/shut joints) or virtually any DNA duplex (forming a transposition product).; GO: 0003677 DNA binding, 0006310 DNA recombination, 0005634 nucleus
Probab=97.95 E-value=0.00033 Score=68.01 Aligned_cols=125 Identities=19% Similarity=0.248 Sum_probs=83.5
Q ss_pred EEEEEeCCCCCCCccceEEEEECCCCC--------EEEeeCCCCCCCCcceeEEEEE--CCE--EEEEecccCC--C---
Q 011998 97 KIIVIGGEDGHDYYLSDVHILDTDTLT--------WKELNTSGMVLSPRAGHSTVAF--GKN--LFVFGGFTDS--Q--- 159 (473)
Q Consensus 97 ~IyV~GG~~~~~~~~ndv~~yD~~t~~--------W~~l~~~g~~p~~R~~hs~~~~--~~~--LyV~GG~~~~--~--- 159 (473)
..++.||++.++...+.+|++...... ..+-...|+.|.+|++|++.++ .++ .++|||+.-- +
T Consensus 40 ~YlIHGGrTPNNElS~~LY~ls~~s~~cNkK~tl~C~EKeLvGdvP~aRYGHt~~vV~SrGKta~VlFGGRSY~P~~qRT 119 (337)
T PF03089_consen 40 QYLIHGGRTPNNELSSSLYILSVDSRGCNKKVTLCCQEKELVGDVPEARYGHTINVVHSRGKTACVLFGGRSYMPPGQRT 119 (337)
T ss_pred eEEecCCcCCCcccccceEEEEeecCCCCceeEEEEecceecCCCCcccccceEEEEEECCcEEEEEECCcccCCccccc
Confidence 578889999988889999998766433 3344446889999999998655 343 8899998421 1
Q ss_pred --------CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC-CCccCcEEEEEcc
Q 011998 160 --------NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-LEALDDMYYLYTG 226 (473)
Q Consensus 160 --------~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~-~~~~~dv~~ld~~ 226 (473)
.+...++..|++-+.++.-.. .++-.....|.+.. .++.+|++||..-. ...--.+|++.++
T Consensus 120 TenWNsVvDC~P~VfLiDleFGC~tah~l-pEl~dG~SFHvsla----r~D~VYilGGHsl~sd~Rpp~l~rlkVd 190 (337)
T PF03089_consen 120 TENWNSVVDCPPQVFLIDLEFGCCTAHTL-PELQDGQSFHVSLA----RNDCVYILGGHSLESDSRPPRLYRLKVD 190 (337)
T ss_pred hhhcceeccCCCeEEEEeccccccccccc-hhhcCCeEEEEEEe----cCceEEEEccEEccCCCCCCcEEEEEEe
Confidence 134558888888877654432 23344455555544 58999999997543 2334456666544
No 51
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.66 E-value=0.01 Score=56.99 Aligned_cols=159 Identities=13% Similarity=0.133 Sum_probs=93.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCc---ccce-EEEEEC----C-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEE
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEA---REGH-SAALVG----K-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~---R~~h-sa~~~~----~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~ 75 (473)
..++++||.|.+|..++. ++.+ ...+ ...-.+ . +|..+..... ......+.+|+..++.|+.
T Consensus 14 ~~~~V~NP~T~~~~~LP~---~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~------~~~~~~~~Vys~~~~~Wr~ 84 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPT---PKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSG------NRNQSEHQVYTLGSNSWRT 84 (230)
T ss_pred CcEEEECCCCCCEEecCC---CCCcccccccceEEEeecccCCcEEEEEEEeecC------CCCCccEEEEEeCCCCccc
Confidence 468999999999999852 2221 1111 111111 1 4555543210 0123478899999999999
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEE-eeCCCCCCCCcc----eeEEEEECCEEE
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLSPRA----GHSTVAFGKNLF 150 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~-l~~~g~~p~~R~----~hs~~~~~~~Ly 150 (473)
+... ++........+.+++.||-+.-..... ....+..||+.+.+|.. ++ +|..+. ....+.++++|.
T Consensus 85 ~~~~--~~~~~~~~~~v~~~G~lyw~~~~~~~~-~~~~IvsFDl~~E~f~~~i~----~P~~~~~~~~~~~L~~~~G~L~ 157 (230)
T TIGR01640 85 IECS--PPHHPLKSRGVCINGVLYYLAYTLKTN-PDYFIVSFDVSSERFKEFIP----LPCGNSDSVDYLSLINYKGKLA 157 (230)
T ss_pred cccC--CCCccccCCeEEECCEEEEEEEECCCC-CcEEEEEEEcccceEeeeee----cCccccccccceEEEEECCEEE
Confidence 8632 121111222667799988887543211 11269999999999995 65 343332 334566788887
Q ss_pred EEecccCCCCccccEEEEe-CCCCcEEEEeeC
Q 011998 151 VFGGFTDSQNLYDDLYMID-VDSGLWTKVITT 181 (473)
Q Consensus 151 V~GG~~~~~~~~ndv~~yd-~~t~~W~~v~~~ 181 (473)
++...... ..-+||+.+ -....|++.-..
T Consensus 158 ~v~~~~~~--~~~~IWvl~d~~~~~W~k~~~i 187 (230)
T TIGR01640 158 VLKQKKDT--NNFDLWVLNDAGKQEWSKLFTV 187 (230)
T ss_pred EEEecCCC--CcEEEEEECCCCCCceeEEEEE
Confidence 77654221 124688875 445679986554
No 52
>TIGR01640 F_box_assoc_1 F-box protein interaction domain. This model describes a large family of plant domains, with several hundred members in Arabidopsis thaliana. Most examples are found C-terminal to an F-box (pfam00646), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes. Some members have two copies of this domain.
Probab=97.48 E-value=0.011 Score=56.79 Aligned_cols=167 Identities=16% Similarity=0.159 Sum_probs=93.1
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceee-EEEEEC-----CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSH-TCSSWK-----NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 134 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~h-s~~~~~-----~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p 134 (473)
..++++||.|++|..++....+......+ ...-++ =+++.+....... ....+++|++.++.|+.+... .+
T Consensus 14 ~~~~V~NP~T~~~~~LP~~~~~~~~~~~~~~~~G~d~~~~~YKVv~~~~~~~~~-~~~~~~Vys~~~~~Wr~~~~~--~~ 90 (230)
T TIGR01640 14 KRLVVWNPSTGQSRWLPTPKSRRSNKESDTYFLGYDPIEKQYKVLCFSDRSGNR-NQSEHQVYTLGSNSWRTIECS--PP 90 (230)
T ss_pred CcEEEECCCCCCEEecCCCCCcccccccceEEEeecccCCcEEEEEEEeecCCC-CCccEEEEEeCCCCccccccC--CC
Confidence 46899999999999997531110001111 111111 1555554432111 345789999999999998742 22
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEE-EeeCCCCCCCcce-eeEEEeccccCCEEEEEcccCC
Q 011998 135 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK-VITTGEGPSARFS-VAGDCLDPLKGGVLVFIGGCNK 212 (473)
Q Consensus 135 ~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~-v~~~g~~P~~R~~-~~a~~~~~~~~~~l~v~GG~~~ 212 (473)
........+.+++.||-+.-.... .....|..||+.+.+|+. ++. |..+.. .....+.. .+++|.++.....
T Consensus 91 ~~~~~~~~v~~~G~lyw~~~~~~~-~~~~~IvsFDl~~E~f~~~i~~----P~~~~~~~~~~~L~~-~~G~L~~v~~~~~ 164 (230)
T TIGR01640 91 HHPLKSRGVCINGVLYYLAYTLKT-NPDYFIVSFDVSSERFKEFIPL----PCGNSDSVDYLSLIN-YKGKLAVLKQKKD 164 (230)
T ss_pred CccccCCeEEECCEEEEEEEECCC-CCcEEEEEEEcccceEeeeeec----CccccccccceEEEE-ECCEEEEEEecCC
Confidence 111222267789998887654221 111269999999999995 543 222210 00111111 2577777665322
Q ss_pred CCCccCcEEEEE-ccccceeeeeccch
Q 011998 213 SLEALDDMYYLY-TGLVNERKLEKLSL 238 (473)
Q Consensus 213 ~~~~~~dv~~ld-~~~~~w~~~~~l~~ 238 (473)
. ..-++|.++ .....|.+...+++
T Consensus 165 ~--~~~~IWvl~d~~~~~W~k~~~i~~ 189 (230)
T TIGR01640 165 T--NNFDLWVLNDAGKQEWSKLFTVPI 189 (230)
T ss_pred C--CcEEEEEECCCCCCceeEEEEEcC
Confidence 1 124899987 33556877666554
No 53
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=96.14 E-value=0.48 Score=47.15 Aligned_cols=122 Identities=15% Similarity=0.166 Sum_probs=71.7
Q ss_pred EEeC-CCCCCC-ccceEEEEECCCCCEEEeeCCCCCCCCcce--eEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 100 VIGG-EDGHDY-YLSDVHILDTDTLTWKELNTSGMVLSPRAG--HSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 100 V~GG-~~~~~~-~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~--hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
++|| +...+. ....+-.||+.+.+|..+... ..+ ..+... +++||+.|-+...+.....+-.||.++.+
T Consensus 2 ~VGG~F~~aGsL~C~~lC~yd~~~~qW~~~g~~------i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~ 75 (281)
T PF12768_consen 2 YVGGSFTSAGSLPCPGLCLYDTDNSQWSSPGNG------ISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQT 75 (281)
T ss_pred EEeeecCCCCCcCCCEEEEEECCCCEeecCCCC------ceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCe
Confidence 3455 343332 467789999999999988651 222 223333 56788887665444345669999999999
Q ss_pred EEEEeeC--CCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 175 WTKVITT--GEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 175 W~~v~~~--g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
|..+... ...|.+-. +..+.......+++.|.... ++.+........|..+..
T Consensus 76 w~~~~~~~s~~ipgpv~---a~~~~~~d~~~~~~aG~~~~-----g~~~l~~~dGs~W~~i~~ 130 (281)
T PF12768_consen 76 WSSLGGGSSNSIPGPVT---ALTFISNDGSNFWVAGRSAN-----GSTFLMKYDGSSWSSIGS 130 (281)
T ss_pred eeecCCcccccCCCcEE---EEEeeccCCceEEEeceecC-----CCceEEEEcCCceEeccc
Confidence 9988763 23444432 22222223556777776522 223333334556766544
No 54
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.97 E-value=0.71 Score=47.31 Aligned_cols=113 Identities=14% Similarity=0.258 Sum_probs=69.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCc-eeeCeEEEEE--------CCCCeEEE
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDE-VYYNDLYILN--------TETFVWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~-~~~~dv~~yd--------~~t~~W~~ 75 (473)
..+.+||+.+..-... +.++.+...-.++.++++||++............ ...-++..|+ .....|+.
T Consensus 86 ~~t~vyDt~t~av~~~---P~l~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~FE~l~~~~~~~~~~~~~~w~W~~ 162 (342)
T PF07893_consen 86 GRTLVYDTDTRAVATG---PRLHSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPCFEALVYRPPPDDPSPEESWSWRS 162 (342)
T ss_pred CCeEEEECCCCeEecc---CCCCCCCcceEEEEeCCeEEEeeccCccccccCccceeEEEeccccccccccCCCcceEEc
Confidence 3478899999988765 3566666666778889999999886332111100 0022344444 23457887
Q ss_pred eecCCCCCCCcee-------eEEEEE-CCEEEE-EeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 76 ATTSGNPPSARDS-------HTCSSW-KNKIIV-IGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 76 l~~~g~~P~~R~~-------hs~~~~-~~~IyV-~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
+++. |..+.. .+.+++ +..||| .-|.. ...|.||+.+.+|++.-.
T Consensus 163 LP~P---Pf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~W~~~Gd 216 (342)
T PF07893_consen 163 LPPP---PFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHEWRKHGD 216 (342)
T ss_pred CCCC---CccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcceeeccc
Confidence 7542 444332 233445 678888 33321 348999999999998843
No 55
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=95.60 E-value=0.63 Score=46.32 Aligned_cols=113 Identities=17% Similarity=0.236 Sum_probs=71.1
Q ss_pred eeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCC--CCCCC
Q 011998 59 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS--GMVLS 135 (473)
Q Consensus 59 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~--g~~p~ 135 (473)
....+..||..+.+|..+... .... -.++... +++||+.|-..-.+.....+-.||..+.+|..+... ..+|.
T Consensus 14 ~C~~lC~yd~~~~qW~~~g~~---i~G~-V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s~~ipg 89 (281)
T PF12768_consen 14 PCPGLCLYDTDNSQWSSPGNG---ISGT-VTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSSNSIPG 89 (281)
T ss_pred CCCEEEEEECCCCEeecCCCC---ceEE-EEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCcccccCCC
Confidence 467899999999999887432 1111 1223333 678888776554432356688999999999988762 34555
Q ss_pred CcceeEEEEEC-CEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 136 PRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 136 ~R~~hs~~~~~-~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
+.........+ ..+++.|..... ..-+..| +..+|+.+..
T Consensus 90 pv~a~~~~~~d~~~~~~aG~~~~g---~~~l~~~--dGs~W~~i~~ 130 (281)
T PF12768_consen 90 PVTALTFISNDGSNFWVAGRSANG---STFLMKY--DGSSWSSIGS 130 (281)
T ss_pred cEEEEEeeccCCceEEEeceecCC---CceEEEE--cCCceEeccc
Confidence 54333333333 357777776221 2346666 5778999876
No 56
>PF07893 DUF1668: Protein of unknown function (DUF1668); InterPro: IPR012871 The hypothetical proteins found in this family are expressed by Oryza sativa (Rice) and are of unknown function.
Probab=95.40 E-value=0.43 Score=48.93 Aligned_cols=118 Identities=17% Similarity=0.197 Sum_probs=73.1
Q ss_pred ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCcc----ce
Q 011998 38 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYL----SD 113 (473)
Q Consensus 38 ~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~----nd 113 (473)
.+++|+..+.. ..+.+||.++..-...+.+ +.+...-.++.++++||++.........- ..
T Consensus 75 ~gskIv~~d~~------------~~t~vyDt~t~av~~~P~l---~~pk~~pisv~VG~~LY~m~~~~~~~~~~~~~~~~ 139 (342)
T PF07893_consen 75 HGSKIVAVDQS------------GRTLVYDTDTRAVATGPRL---HSPKRCPISVSVGDKLYAMDRSPFPEPAGRPDFPC 139 (342)
T ss_pred cCCeEEEEcCC------------CCeEEEECCCCeEeccCCC---CCCCcceEEEEeCCeEEEeeccCccccccCcccee
Confidence 48889888663 2478999999876655443 44555556677799999998875432110 03
Q ss_pred EEEE--E--------CCCCCEEEeeCCCCCCCCcc-------eeEEEEE-CCEEEE-EecccCCCCccccEEEEeCCCCc
Q 011998 114 VHIL--D--------TDTLTWKELNTSGMVLSPRA-------GHSTVAF-GKNLFV-FGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 114 v~~y--D--------~~t~~W~~l~~~g~~p~~R~-------~hs~~~~-~~~LyV-~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
++++ + ...-.|+.+++ +|..+. -.+-+++ +..|+| .-|.. ...|.||..+.+
T Consensus 140 FE~l~~~~~~~~~~~~~~w~W~~LP~---PPf~~~~~~~~~~i~sYavv~g~~I~vS~~~~~------~GTysfDt~~~~ 210 (342)
T PF07893_consen 140 FEALVYRPPPDDPSPEESWSWRSLPP---PPFVRDRRYSDYRITSYAVVDGRTIFVSVNGRR------WGTYSFDTESHE 210 (342)
T ss_pred EEEeccccccccccCCCcceEEcCCC---CCccccCCcccceEEEEEEecCCeEEEEecCCc------eEEEEEEcCCcc
Confidence 3343 4 22235777764 343332 2334455 455877 43321 238999999999
Q ss_pred EEEEe
Q 011998 175 WTKVI 179 (473)
Q Consensus 175 W~~v~ 179 (473)
|+++.
T Consensus 211 W~~~G 215 (342)
T PF07893_consen 211 WRKHG 215 (342)
T ss_pred eeecc
Confidence 99984
No 57
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=93.82 E-value=5.9 Score=37.24 Aligned_cols=170 Identities=22% Similarity=0.305 Sum_probs=96.0
Q ss_pred CcEEEEECCCC--eEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE-eecC
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR-ATTS 79 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~-l~~~ 79 (473)
..+++||+.+. .|+.-. + .+........++.||+..+- +.++.+|..+. .|+. ....
T Consensus 46 ~~l~~~d~~tG~~~W~~~~-----~-~~~~~~~~~~~~~v~v~~~~------------~~l~~~d~~tG~~~W~~~~~~~ 107 (238)
T PF13360_consen 46 GNLYALDAKTGKVLWRFDL-----P-GPISGAPVVDGGRVYVGTSD------------GSLYALDAKTGKVLWSIYLTSS 107 (238)
T ss_dssp SEEEEEETTTSEEEEEEEC-----S-SCGGSGEEEETTEEEEEETT------------SEEEEEETTTSCEEEEEEE-SS
T ss_pred CEEEEEECCCCCEEEEeec-----c-ccccceeeecccccccccce------------eeeEecccCCcceeeeeccccc
Confidence 56899999776 466542 1 11222246778899888742 26899997766 6883 4321
Q ss_pred CCCCCC-ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCC--------cceeEEEEECCE
Q 011998 80 GNPPSA-RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP--------RAGHSTVAFGKN 148 (473)
Q Consensus 80 g~~P~~-R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~--------R~~hs~~~~~~~ 148 (473)
++.. +........++.+|+... -..++.+|+++.+ |..--. .+.. ......+..++.
T Consensus 108 --~~~~~~~~~~~~~~~~~~~~~~~-------~g~l~~~d~~tG~~~w~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~ 175 (238)
T PF13360_consen 108 --PPAGVRSSSSPAVDGDRLYVGTS-------SGKLVALDPKTGKLLWKYPVG---EPRGSSPISSFSDINGSPVISDGR 175 (238)
T ss_dssp --CTCSTB--SEEEEETTEEEEEET-------CSEEEEEETTTTEEEEEEESS---TT-SS--EEEETTEEEEEECCTTE
T ss_pred --cccccccccCceEecCEEEEEec-------cCcEEEEecCCCcEEEEeecC---CCCCCcceeeecccccceEEECCE
Confidence 1222 233344445777777653 4678999998775 655432 2111 112333444678
Q ss_pred EEEEecccCCCCccccEEEEeCCCCc--EEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 149 LFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 149 LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
+|+..+.. .+..+|..++. |+.. ... . ...... .++.||+.. . -..++.+|..
T Consensus 176 v~~~~~~g-------~~~~~d~~tg~~~w~~~-~~~-----~--~~~~~~---~~~~l~~~~-~------~~~l~~~d~~ 230 (238)
T PF13360_consen 176 VYVSSGDG-------RVVAVDLATGEKLWSKP-ISG-----I--YSLPSV---DGGTLYVTS-S------DGRLYALDLK 230 (238)
T ss_dssp EEEECCTS-------SEEEEETTTTEEEEEEC-SS------E--CECEEC---CCTEEEEEE-T------TTEEEEEETT
T ss_pred EEEEcCCC-------eEEEEECCCCCEEEEec-CCC-----c--cCCcee---eCCEEEEEe-C------CCEEEEEECC
Confidence 88876652 15666999886 7433 211 1 111222 467777764 2 2468888877
Q ss_pred ccc
Q 011998 227 LVN 229 (473)
Q Consensus 227 ~~~ 229 (473)
+.+
T Consensus 231 tG~ 233 (238)
T PF13360_consen 231 TGK 233 (238)
T ss_dssp TTE
T ss_pred CCC
Confidence 654
No 58
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=93.34 E-value=8 Score=40.01 Aligned_cols=147 Identities=14% Similarity=0.092 Sum_probs=78.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..++++|+.+++...+.. .+..... ....-+ +.|++..... -..++|.+|+.+...+.+......
T Consensus 214 ~~i~v~d~~~g~~~~~~~---~~~~~~~-~~~spDg~~l~~~~~~~---------~~~~i~~~d~~~~~~~~l~~~~~~- 279 (417)
T TIGR02800 214 PEIYVQDLATGQREKVAS---FPGMNGA-PAFSPDGSKLAVSLSKD---------GNPDIYVMDLDGKQLTRLTNGPGI- 279 (417)
T ss_pred cEEEEEECCCCCEEEeec---CCCCccc-eEECCCCCEEEEEECCC---------CCccEEEEECCCCCEEECCCCCCC-
Confidence 468889988876665531 1211111 112223 3565543321 125799999998887776543111
Q ss_pred CCceeeEEEEECC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEE-EECCEEEEEecccCCCCc
Q 011998 84 SARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 84 ~~R~~hs~~~~~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~-~~~~~LyV~GG~~~~~~~ 161 (473)
.... ...-++ +|++.....+ ...+|++|..+..++.+...+ ....... .-+++.+++..... .
T Consensus 280 --~~~~-~~s~dg~~l~~~s~~~g----~~~iy~~d~~~~~~~~l~~~~-----~~~~~~~~spdg~~i~~~~~~~---~ 344 (417)
T TIGR02800 280 --DTEP-SWSPDGKSIAFTSDRGG----SPQIYMMDADGGEVRRLTFRG-----GYNASPSWSPDGDLIAFVHREG---G 344 (417)
T ss_pred --CCCE-EECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC-----CCccCeEECCCCCEEEEEEccC---C
Confidence 1111 111244 4554433322 247999999998888776421 1222222 23455555554422 2
Q ss_pred cccEEEEeCCCCcEEEEee
Q 011998 162 YDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~ 180 (473)
...++.+|+.+..++.+..
T Consensus 345 ~~~i~~~d~~~~~~~~l~~ 363 (417)
T TIGR02800 345 GFNIAVMDLDGGGERVLTD 363 (417)
T ss_pred ceEEEEEeCCCCCeEEccC
Confidence 3469999999877766653
No 59
>PRK05137 tolB translocation protein TolB; Provisional
Probab=92.66 E-value=15 Score=38.63 Aligned_cols=148 Identities=13% Similarity=0.073 Sum_probs=75.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+|++|+.+.+.+.+. ..+.. .......-++ +|++....+ -..++|++|+.+....++... +
T Consensus 226 ~~i~~~dl~~g~~~~l~---~~~g~-~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~Lt~~---~ 289 (435)
T PRK05137 226 PRVYLLDLETGQRELVG---NFPGM-TFAPRFSPDGRKVVMSLSQG---------GNTDIYTMDLRSGTTTRLTDS---P 289 (435)
T ss_pred CEEEEEECCCCcEEEee---cCCCc-ccCcEECCCCCEEEEEEecC---------CCceEEEEECCCCceEEccCC---C
Confidence 46899999888877663 22211 1111222234 454443321 125799999999887776432 1
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 163 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~n 163 (473)
.. .......-+++-++|...... ..++|++|..+...+.+... ..+.......-+++.+++...... ..
T Consensus 290 ~~-~~~~~~spDG~~i~f~s~~~g---~~~Iy~~d~~g~~~~~lt~~----~~~~~~~~~SpdG~~ia~~~~~~~---~~ 358 (435)
T PRK05137 290 AI-DTSPSYSPDGSQIVFESDRSG---SPQLYVMNADGSNPRRISFG----GGRYSTPVWSPRGDLIAFTKQGGG---QF 358 (435)
T ss_pred Cc-cCceeEcCCCCEEEEEECCCC---CCeEEEEECCCCCeEEeecC----CCcccCeEECCCCCEEEEEEcCCC---ce
Confidence 11 111122224443334332111 25799999988887777531 112222222234443333322111 24
Q ss_pred cEEEEeCCCCcEEEEe
Q 011998 164 DLYMIDVDSGLWTKVI 179 (473)
Q Consensus 164 dv~~yd~~t~~W~~v~ 179 (473)
.++.+|+.+...+.+.
T Consensus 359 ~i~~~d~~~~~~~~lt 374 (435)
T PRK05137 359 SIGVMKPDGSGERILT 374 (435)
T ss_pred EEEEEECCCCceEecc
Confidence 6899998777665554
No 60
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=91.97 E-value=12 Score=35.84 Aligned_cols=184 Identities=13% Similarity=0.080 Sum_probs=96.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC--C
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--G 80 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~--g 80 (473)
..++++|+.+..-..... +. -.+++.. ++.+|+.... .+.++|+.+.+++.+... +
T Consensus 22 ~~i~~~~~~~~~~~~~~~----~~---~~G~~~~~~~g~l~v~~~~-------------~~~~~d~~~g~~~~~~~~~~~ 81 (246)
T PF08450_consen 22 GRIYRVDPDTGEVEVIDL----PG---PNGMAFDRPDGRLYVADSG-------------GIAVVDPDTGKVTVLADLPDG 81 (246)
T ss_dssp TEEEEEETTTTEEEEEES----SS---EEEEEEECTTSEEEEEETT-------------CEEEEETTTTEEEEEEEEETT
T ss_pred CEEEEEECCCCeEEEEec----CC---CceEEEEccCCEEEEEEcC-------------ceEEEecCCCcEEEEeeccCC
Confidence 457778877776655432 22 2333333 6788888663 346679999999888654 2
Q ss_pred CCCCCceeeEEEEECCEEEEEeCCCCCCCcc--ceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECC-EEEEEecccC
Q 011998 81 NPPSARDSHTCSSWKNKIIVIGGEDGHDYYL--SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGK-NLFVFGGFTD 157 (473)
Q Consensus 81 ~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~--ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~-~LyV~GG~~~ 157 (473)
..+..|....++.-++.||+---........ ..+|++++. .+.+.+.. .+ .+..--+..-++ .||+.--
T Consensus 82 ~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~--~~--~~pNGi~~s~dg~~lyv~ds--- 153 (246)
T PF08450_consen 82 GVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVAD--GL--GFPNGIAFSPDGKTLYVADS--- 153 (246)
T ss_dssp CSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEE--EE--SSEEEEEEETTSSEEEEEET---
T ss_pred CcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEec--Cc--ccccceEECCcchheeeccc---
Confidence 1133344444444478888754322221122 679999998 66666543 11 222222222234 4776422
Q ss_pred CCCccccEEEEeCCCC--cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 158 SQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 158 ~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
..+.||+|++... .+.........+......-+.+++ .++.||+..- .-+.+++|+..-
T Consensus 154 ---~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD--~~G~l~va~~------~~~~I~~~~p~G 214 (246)
T PF08450_consen 154 ---FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVD--SDGNLWVADW------GGGRIVVFDPDG 214 (246)
T ss_dssp ---TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEB--TTS-EEEEEE------TTTEEEEEETTS
T ss_pred ---ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEc--CCCCEEEEEc------CCCEEEEECCCc
Confidence 2355999998643 343322111112111123445554 4678888622 123578888764
No 61
>PRK00178 tolB translocation protein TolB; Provisional
Probab=91.76 E-value=18 Score=37.85 Aligned_cols=147 Identities=10% Similarity=0.076 Sum_probs=77.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+|++|+.+++-+.+... +. ........-++ +|++..-.. + ..++|++|+.+..++++... +
T Consensus 223 ~~l~~~~l~~g~~~~l~~~---~g-~~~~~~~SpDG~~la~~~~~~------g---~~~Iy~~d~~~~~~~~lt~~---~ 286 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF---EG-LNGAPAWSPDGSKLAFVLSKD------G---NPEIYVMDLASRQLSRVTNH---P 286 (430)
T ss_pred CEEEEEECCCCCEEEccCC---CC-CcCCeEECCCCCEEEEEEccC------C---CceEEEEECCCCCeEEcccC---C
Confidence 4688888888877665321 11 01111112233 454432211 1 15899999999988876432 1
Q ss_pred CCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCE-EEEEecccCCCCc
Q 011998 84 SARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKN-LFVFGGFTDSQNL 161 (473)
Q Consensus 84 ~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~-LyV~GG~~~~~~~ 161 (473)
. ........-+ ..|++.....+ ...+|++|+.+.+++++...+ .........-+++ |++.... . +
T Consensus 287 ~-~~~~~~~spDg~~i~f~s~~~g----~~~iy~~d~~~g~~~~lt~~~----~~~~~~~~Spdg~~i~~~~~~-~-~-- 353 (430)
T PRK00178 287 A-IDTEPFWGKDGRTLYFTSDRGG----KPQIYKVNVNGGRAERVTFVG----NYNARPRLSADGKTLVMVHRQ-D-G-- 353 (430)
T ss_pred C-CcCCeEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEeecCC----CCccceEECCCCCEEEEEEcc-C-C--
Confidence 1 1111111223 45555432222 247999999999988876321 1111112222344 4444322 1 1
Q ss_pred cccEEEEeCCCCcEEEEee
Q 011998 162 YDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~ 180 (473)
...++.+|+.+..++.+..
T Consensus 354 ~~~l~~~dl~tg~~~~lt~ 372 (430)
T PRK00178 354 NFHVAAQDLQRGSVRILTD 372 (430)
T ss_pred ceEEEEEECCCCCEEEccC
Confidence 2359999999998887764
No 62
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=91.60 E-value=5.6 Score=34.34 Aligned_cols=86 Identities=9% Similarity=0.113 Sum_probs=56.5
Q ss_pred EECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEE-eCC
Q 011998 93 SWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMI-DVD 171 (473)
Q Consensus 93 ~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~y-d~~ 171 (473)
.++|-+|-..-. .....+.+..||..+.+|+.++..............+.++|+|-++.-........-++|++ |..
T Consensus 3 cinGvly~~a~~--~~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWvLeD~~ 80 (129)
T PF08268_consen 3 CINGVLYWLAWS--EDSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWVLEDYE 80 (129)
T ss_pred EECcEEEeEEEE--CCCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEEeeccc
Confidence 357777766554 22235779999999999999885211224455566777889877765442222234578888 466
Q ss_pred CCcEEEEee
Q 011998 172 SGLWTKVIT 180 (473)
Q Consensus 172 t~~W~~v~~ 180 (473)
+..|.+...
T Consensus 81 k~~Wsk~~~ 89 (129)
T PF08268_consen 81 KQEWSKKHI 89 (129)
T ss_pred cceEEEEEE
Confidence 788998765
No 63
>PRK04792 tolB translocation protein TolB; Provisional
Probab=91.12 E-value=23 Score=37.55 Aligned_cols=148 Identities=12% Similarity=0.126 Sum_probs=78.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+|++|+.+.+-+.+. ..+.. .......-+ .+|++....+ + ..++|++|+.+.+.+++....
T Consensus 242 ~~L~~~dl~tg~~~~lt---~~~g~-~~~~~wSPDG~~La~~~~~~------g---~~~Iy~~dl~tg~~~~lt~~~--- 305 (448)
T PRK04792 242 AEIFVQDIYTQVREKVT---SFPGI-NGAPRFSPDGKKLALVLSKD------G---QPEIYVVDIATKALTRITRHR--- 305 (448)
T ss_pred cEEEEEECCCCCeEEec---CCCCC-cCCeeECCCCCEEEEEEeCC------C---CeEEEEEECCCCCeEECccCC---
Confidence 46888888887766553 21211 111112223 4565543321 1 257999999999888775421
Q ss_pred CCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcc
Q 011998 84 SARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 84 ~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
.........-+ ..|++.....+ ..++|++|+.+.+++.+...+. ........-+++.++|.+... + .
T Consensus 306 -~~~~~p~wSpDG~~I~f~s~~~g----~~~Iy~~dl~~g~~~~Lt~~g~----~~~~~~~SpDG~~l~~~~~~~-g--~ 373 (448)
T PRK04792 306 -AIDTEPSWHPDGKSLIFTSERGG----KPQIYRVNLASGKVSRLTFEGE----QNLGGSITPDGRSMIMVNRTN-G--K 373 (448)
T ss_pred -CCccceEECCCCCEEEEEECCCC----CceEEEEECCCCCEEEEecCCC----CCcCeeECCCCCEEEEEEecC-C--c
Confidence 11111111224 44554433222 2579999999999988853211 111112223444344433321 1 2
Q ss_pred ccEEEEeCCCCcEEEEee
Q 011998 163 DDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~ 180 (473)
..++.+|+.+...+.+..
T Consensus 374 ~~I~~~dl~~g~~~~lt~ 391 (448)
T PRK04792 374 FNIARQDLETGAMQVLTS 391 (448)
T ss_pred eEEEEEECCCCCeEEccC
Confidence 468999999998877654
No 64
>PRK04792 tolB translocation protein TolB; Provisional
Probab=90.80 E-value=25 Score=37.33 Aligned_cols=144 Identities=13% Similarity=0.140 Sum_probs=74.9
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCccee
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 140 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~h 140 (473)
..+|++|+.+.+-+.+... +..-...+..-.+..|++....++ ..++|++|+.+.+.+++.... .....
T Consensus 242 ~~L~~~dl~tg~~~~lt~~---~g~~~~~~wSPDG~~La~~~~~~g----~~~Iy~~dl~tg~~~~lt~~~----~~~~~ 310 (448)
T PRK04792 242 AEIFVQDIYTQVREKVTSF---PGINGAPRFSPDGKKLALVLSKDG----QPEIYVVDIATKALTRITRHR----AIDTE 310 (448)
T ss_pred cEEEEEECCCCCeEEecCC---CCCcCCeeECCCCCEEEEEEeCCC----CeEEEEEECCCCCeEECccCC----CCccc
Confidence 5799999998876666432 111111111112445665543332 257999999999888775411 11111
Q ss_pred EEEEECCE-EEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCc
Q 011998 141 STVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 219 (473)
Q Consensus 141 s~~~~~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~d 219 (473)
....-+++ |++..... -...+|.+|+.+++++++...+... ...... .+++.+++.+.... ..+
T Consensus 311 p~wSpDG~~I~f~s~~~----g~~~Iy~~dl~~g~~~~Lt~~g~~~-----~~~~~S---pDG~~l~~~~~~~g---~~~ 375 (448)
T PRK04792 311 PSWHPDGKSLIFTSERG----GKPQIYRVNLASGKVSRLTFEGEQN-----LGGSIT---PDGRSMIMVNRTNG---KFN 375 (448)
T ss_pred eEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEEecCCCCC-----cCeeEC---CCCCEEEEEEecCC---ceE
Confidence 11222444 44433221 1257999999999998886432211 111221 23434444333221 246
Q ss_pred EEEEEccccce
Q 011998 220 MYYLYTGLVNE 230 (473)
Q Consensus 220 v~~ld~~~~~w 230 (473)
+|.++......
T Consensus 376 I~~~dl~~g~~ 386 (448)
T PRK04792 376 IARQDLETGAM 386 (448)
T ss_pred EEEEECCCCCe
Confidence 88888766543
No 65
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=90.04 E-value=16 Score=33.97 Aligned_cols=151 Identities=13% Similarity=0.133 Sum_probs=74.4
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE--EEeecC-CCCCCCceeeEEEEE--CCEEEEEeCCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW--KRATTS-GNPPSARDSHTCSSW--KNKIIVIGGEDGHD 108 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W--~~l~~~-g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~ 108 (473)
++....+.+|+|-| +.+|+++...... ..+... ...| ..-.++... ++++|+|-|
T Consensus 11 A~~~~~g~~y~FkG-------------~~~w~~~~~~~~~~p~~I~~~w~~~p--~~IDAa~~~~~~~~~yfFkg----- 70 (194)
T cd00094 11 AVTTLRGELYFFKG-------------RYFWRLSPGKPPGSPFLISSFWPSLP--SPVDAAFERPDTGKIYFFKG----- 70 (194)
T ss_pred eEEEeCCEEEEEeC-------------CEEEEEeCCCCCCCCeEhhhhCCCCC--CCccEEEEECCCCEEEEECC-----
Confidence 34445699999988 2578887652211 122111 1112 222233333 389999966
Q ss_pred CccceEEEEECCCCCEEE---eeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEE-----E
Q 011998 109 YYLSDVHILDTDTLTWKE---LNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK-----V 178 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~W~~---l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~-----v 178 (473)
+..|+|+..+..+.. +...+..+.+..-.++... ++++|+|.|. ..|+||...++... +
T Consensus 71 ---~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg~--------~y~ry~~~~~~v~~~yP~~i 139 (194)
T cd00094 71 ---DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKGD--------KYWRYDEKTQKMDPGYPKLI 139 (194)
T ss_pred ---CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeCC--------EEEEEeCCCccccCCCCcch
Confidence 467888766432211 1110111111112233333 5789999884 37888876554321 1
Q ss_pred eeC-CCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 179 ITT-GEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 179 ~~~-g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
... ...| ..-.++... .++++|+|-| +..|+|+....
T Consensus 140 ~~~w~g~p--~~idaa~~~---~~~~~yfF~g--------~~y~~~d~~~~ 177 (194)
T cd00094 140 ETDFPGVP--DKVDAAFRW---LDGYYYFFKG--------DQYWRFDPRSK 177 (194)
T ss_pred hhcCCCcC--CCcceeEEe---CCCcEEEEEC--------CEEEEEeCccc
Confidence 100 0112 112233333 3478888865 35677886654
No 66
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=89.42 E-value=24 Score=36.56 Aligned_cols=113 Identities=17% Similarity=0.170 Sum_probs=66.9
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCCC-----CCceeeEEEEECCEEEEEeCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPP-----SARDSHTCSSWKNKIIVIGGEDG 106 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P-----~~R~~hs~~~~~~~IyV~GG~~~ 106 (473)
+.++.+++||+.+.. ..++.||..+. .|+.-....... .++...+.++.++++|+.+ .
T Consensus 64 sPvv~~~~vy~~~~~------------g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~-~-- 128 (394)
T PRK11138 64 HPAVAYNKVYAADRA------------GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGS-E-- 128 (394)
T ss_pred ccEEECCEEEEECCC------------CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEc-C--
Confidence 456678999998662 36889998765 587532210000 1123334556688888743 2
Q ss_pred CCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc--EEEE
Q 011998 107 HDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKV 178 (473)
Q Consensus 107 ~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v 178 (473)
-..++.+|.++.+ |+.-.. .+ ...+.++.++.+|+..+. +.++.||+++++ |+.-
T Consensus 129 ----~g~l~ald~~tG~~~W~~~~~-----~~-~~ssP~v~~~~v~v~~~~-------g~l~ald~~tG~~~W~~~ 187 (394)
T PRK11138 129 ----KGQVYALNAEDGEVAWQTKVA-----GE-ALSRPVVSDGLVLVHTSN-------GMLQALNESDGAVKWTVN 187 (394)
T ss_pred ----CCEEEEEECCCCCCcccccCC-----Cc-eecCCEEECCEEEEECCC-------CEEEEEEccCCCEeeeec
Confidence 2468999987754 865432 11 112234567777774332 359999998774 7654
No 67
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=88.32 E-value=9 Score=40.20 Aligned_cols=110 Identities=15% Similarity=0.179 Sum_probs=68.0
Q ss_pred CCE-EEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~-Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+|. .++++|.. .=+|.||+.+.+-+++.++...+.+-...--++..+.++++-|.. .-++++
T Consensus 268 ~G~~~i~~s~rr-----------ky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~------G~I~lL 330 (514)
T KOG2055|consen 268 NGHSVIFTSGRR-----------KYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNN------GHIHLL 330 (514)
T ss_pred CCceEEEecccc-----------eEEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEcccC------ceEEee
Confidence 444 78888852 247999999999988876644443323333344566677776753 346777
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
...|+.|.---. ++-.....+-...+..||+.||.+ .+|++|+..+.-
T Consensus 331 hakT~eli~s~K---ieG~v~~~~fsSdsk~l~~~~~~G-------eV~v~nl~~~~~ 378 (514)
T KOG2055|consen 331 HAKTKELITSFK---IEGVVSDFTFSSDSKELLASGGTG-------EVYVWNLRQNSC 378 (514)
T ss_pred hhhhhhhhheee---eccEEeeEEEecCCcEEEEEcCCc-------eEEEEecCCcce
Confidence 788888742211 222222223333345689998873 499999998743
No 68
>PRK03629 tolB translocation protein TolB; Provisional
Probab=88.04 E-value=38 Score=35.65 Aligned_cols=104 Identities=11% Similarity=0.173 Sum_probs=57.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
.++|++|+.+.+.+++... + .......+ +++.++|...... ..++|.+|+.+...+++...+ ...
T Consensus 267 ~~I~~~d~~tg~~~~lt~~---~---~~~~~~~wSPDG~~I~f~s~~~g---~~~Iy~~d~~~g~~~~lt~~~----~~~ 333 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDG---R---SNNTEPTWFPDSQNLAYTSDQAG---RPQVYKVNINGGAPQRITWEG----SQN 333 (429)
T ss_pred cEEEEEECCCCCEEEccCC---C---CCcCceEECCCCCEEEEEeCCCC---CceEEEEECCCCCeEEeecCC----CCc
Confidence 3699999999888776432 1 11222222 4544444332211 247999999888777764311 111
Q ss_pred eeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 139 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 139 ~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
......-+++.+++.+.... ...++.+|+.++.++.+..
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g---~~~I~~~dl~~g~~~~Lt~ 372 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGG---QQHIAKQDLATGGVQVLTD 372 (429)
T ss_pred cCEEECCCCCEEEEEEccCC---CceEEEEECCCCCeEEeCC
Confidence 11222234444444333221 2369999999999888764
No 69
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=87.92 E-value=24 Score=33.09 Aligned_cols=137 Identities=24% Similarity=0.319 Sum_probs=81.0
Q ss_pred CcEEEEECCCC--eEEecccCCCCCCcccceE--EEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeec
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGPEAREGHS--AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATT 78 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P~~R~~hs--a~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~ 78 (473)
..|.++|+.+. .|+.-- +. ...+.. .+..++.+|+..+. ..+++||..+. .|+.-..
T Consensus 3 g~l~~~d~~tG~~~W~~~~--~~---~~~~~~~~~~~~~~~v~~~~~~------------~~l~~~d~~tG~~~W~~~~~ 65 (238)
T PF13360_consen 3 GTLSALDPRTGKELWSYDL--GP---GIGGPVATAVPDGGRVYVASGD------------GNLYALDAKTGKVLWRFDLP 65 (238)
T ss_dssp SEEEEEETTTTEEEEEEEC--SS---SCSSEEETEEEETTEEEEEETT------------SEEEEEETTTSEEEEEEECS
T ss_pred CEEEEEECCCCCEEEEEEC--CC---CCCCccceEEEeCCEEEEEcCC------------CEEEEEECCCCCEEEEeecc
Confidence 45789999776 587631 11 122223 34478899998542 57999999777 4665431
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEE-eeCCCCCCCCcceeEEEEECCEEEEEecc
Q 011998 79 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKE-LNTSGMVLSPRAGHSTVAFGKNLFVFGGF 155 (473)
Q Consensus 79 ~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~-l~~~g~~p~~R~~hs~~~~~~~LyV~GG~ 155 (473)
. +........++.+|+..+ -+.++.+|..+.+ |+. .......+ .+........++.+|+...
T Consensus 66 ~------~~~~~~~~~~~~v~v~~~-------~~~l~~~d~~tG~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~- 130 (238)
T PF13360_consen 66 G------PISGAPVVDGGRVYVGTS-------DGSLYALDAKTGKVLWSIYLTSSPPAG-VRSSSSPAVDGDRLYVGTS- 130 (238)
T ss_dssp S------CGGSGEEEETTEEEEEET-------TSEEEEEETTTSCEEEEEEE-SSCTCS-TB--SEEEEETTEEEEEET-
T ss_pred c------cccceeeecccccccccc-------eeeeEecccCCcceeeeeccccccccc-cccccCceEecCEEEEEec-
Confidence 1 111224667899988762 1378999977765 883 43311111 2333444555777766653
Q ss_pred cCCCCccccEEEEeCCCC--cEEEEe
Q 011998 156 TDSQNLYDDLYMIDVDSG--LWTKVI 179 (473)
Q Consensus 156 ~~~~~~~ndv~~yd~~t~--~W~~v~ 179 (473)
...++.+|++++ .|+.-.
T Consensus 131 ------~g~l~~~d~~tG~~~w~~~~ 150 (238)
T PF13360_consen 131 ------SGKLVALDPKTGKLLWKYPV 150 (238)
T ss_dssp ------CSEEEEEETTTTEEEEEEES
T ss_pred ------cCcEEEEecCCCcEEEEeec
Confidence 235899999877 476644
No 70
>PRK04043 tolB translocation protein TolB; Provisional
Probab=87.37 E-value=42 Score=35.38 Aligned_cols=149 Identities=13% Similarity=0.125 Sum_probs=83.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.++|++|+.+++=+.+.. .+ .........-++ +|++.-... -..++|++|..+..++++... +
T Consensus 213 ~~Iyv~dl~tg~~~~lt~---~~-g~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~dl~~g~~~~LT~~---~ 276 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIAS---SQ-GMLVVSDVSKDGSKLLLTMAPK---------GQPDIYLYDTNTKTLTQITNY---P 276 (419)
T ss_pred CEEEEEECCCCcEEEEec---CC-CcEEeeEECCCCCEEEEEEccC---------CCcEEEEEECCCCcEEEcccC---C
Confidence 479999998876666531 11 111111222233 555544321 125899999999999888543 2
Q ss_pred CCceeeEEE-E-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCC-
Q 011998 84 SARDSHTCS-S-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN- 160 (473)
Q Consensus 84 ~~R~~hs~~-~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~- 160 (473)
. ...... . .+.+||+.-...+ ..++|++|..+.+.+++...+. +.. ...-+++.+++-.......
T Consensus 277 ~--~d~~p~~SPDG~~I~F~Sdr~g----~~~Iy~~dl~~g~~~rlt~~g~-----~~~-~~SPDG~~Ia~~~~~~~~~~ 344 (419)
T PRK04043 277 G--IDVNGNFVEDDKRIVFVSDRLG----YPNIFMKKLNSGSVEQVVFHGK-----NNS-SVSTYKNYIVYSSRETNNEF 344 (419)
T ss_pred C--ccCccEECCCCCEEEEEECCCC----CceEEEEECCCCCeEeCccCCC-----cCc-eECCCCCEEEEEEcCCCccc
Confidence 1 111111 1 2456777654432 3689999999999877764221 222 2333444333333222111
Q ss_pred --ccccEEEEeCCCCcEEEEeeC
Q 011998 161 --LYDDLYMIDVDSGLWTKVITT 181 (473)
Q Consensus 161 --~~ndv~~yd~~t~~W~~v~~~ 181 (473)
...+++.+|+++..++.+...
T Consensus 345 ~~~~~~I~v~d~~~g~~~~LT~~ 367 (419)
T PRK04043 345 GKNTFNLYLISTNSDYIRRLTAN 367 (419)
T ss_pred CCCCcEEEEEECCCCCeEECCCC
Confidence 235799999999999888763
No 71
>PF08268 FBA_3: F-box associated domain; InterPro: IPR013187 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=87.18 E-value=7.3 Score=33.62 Aligned_cols=86 Identities=15% Similarity=0.210 Sum_probs=58.1
Q ss_pred EECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEE
Q 011998 37 LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 37 ~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
.++|-+|-..-.. ....+-+..||..+.+|+.+..............++.++|+|-++.-........-++|+
T Consensus 3 cinGvly~~a~~~-------~~~~~~IvsFDv~~E~f~~i~~P~~~~~~~~~~~L~~~~G~L~~v~~~~~~~~~~~~iWv 75 (129)
T PF08268_consen 3 CINGVLYWLAWSE-------DSDNNVIVSFDVRSEKFRFIKLPEDPYSSDCSSTLIEYKGKLALVSYNDQGEPDSIDIWV 75 (129)
T ss_pred EECcEEEeEEEEC-------CCCCcEEEEEEcCCceEEEEEeeeeeccccCccEEEEeCCeEEEEEecCCCCcceEEEEE
Confidence 4677777766641 112467899999999999887532234556677778889998887654433223467888
Q ss_pred E-ECCCCCEEEeeC
Q 011998 117 L-DTDTLTWKELNT 129 (473)
Q Consensus 117 y-D~~t~~W~~l~~ 129 (473)
+ |....+|.+...
T Consensus 76 LeD~~k~~Wsk~~~ 89 (129)
T PF08268_consen 76 LEDYEKQEWSKKHI 89 (129)
T ss_pred eeccccceEEEEEE
Confidence 8 466788997754
No 72
>PRK04922 tolB translocation protein TolB; Provisional
Probab=86.92 E-value=44 Score=35.14 Aligned_cols=146 Identities=11% Similarity=0.079 Sum_probs=75.9
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..++++|..+++-+.+. ..+.. .......-++ +|++....+ + ..++|++|+.+....++... .
T Consensus 228 ~~l~~~dl~~g~~~~l~---~~~g~-~~~~~~SpDG~~l~~~~s~~------g---~~~Iy~~d~~~g~~~~lt~~---~ 291 (433)
T PRK04922 228 SAIYVQDLATGQRELVA---SFRGI-NGAPSFSPDGRRLALTLSRD------G---NPEIYVMDLGSRQLTRLTNH---F 291 (433)
T ss_pred cEEEEEECCCCCEEEec---cCCCC-ccCceECCCCCEEEEEEeCC------C---CceEEEEECCCCCeEECccC---C
Confidence 35888888887776653 11211 1111222234 555443211 1 24799999998877665432 1
Q ss_pred CCceeeEEEEECCE-EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEE-EECC-EEEEEecccCCCC
Q 011998 84 SARDSHTCSSWKNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGK-NLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~~~~-IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~-~~~~-~LyV~GG~~~~~~ 160 (473)
. ........-+++ |++.....+ ..++|++|..+.+++.+...+ .+..... .-++ .|++..+. . +
T Consensus 292 ~-~~~~~~~spDG~~l~f~sd~~g----~~~iy~~dl~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~~~~-~-~- 358 (433)
T PRK04922 292 G-IDTEPTWAPDGKSIYFTSDRGG----RPQIYRVAASGGSAERLTFQG-----NYNARASVSPDGKKIAMVHGS-G-G- 358 (433)
T ss_pred C-CccceEECCCCCEEEEEECCCC----CceEEEEECCCCCeEEeecCC-----CCccCEEECCCCCEEEEEECC-C-C-
Confidence 1 111111122444 444433322 247999999998888776421 1222222 2234 45554332 1 1
Q ss_pred ccccEEEEeCCCCcEEEEee
Q 011998 161 LYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~ 180 (473)
...++++|+.++.++.+..
T Consensus 359 -~~~I~v~d~~~g~~~~Lt~ 377 (433)
T PRK04922 359 -QYRIAVMDLSTGSVRTLTP 377 (433)
T ss_pred -ceeEEEEECCCCCeEECCC
Confidence 1369999999888876653
No 73
>cd00094 HX Hemopexin-like repeats.; Hemopexin is a heme-binding protein that transports heme to the liver. Hemopexin-like repeats occur in vitronectin and some matrix metalloproteinases family (matrixins). The HX repeats of some matrixins bind tissue inhibitor of metalloproteinases (TIMPs). This CD contains 4 instances of the repeat.
Probab=86.84 E-value=26 Score=32.53 Aligned_cols=106 Identities=14% Similarity=0.260 Sum_probs=56.8
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE---EeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK---RATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~---~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv 114 (473)
+++|+|-| +..|+|+..+..+. .+...+-++.+..-.++... ++++|+|-| +..
T Consensus 63 ~~~yfFkg-------------~~yw~~~~~~~~~~~Pk~i~~~~~~~~~~~iDAA~~~~~~~~~yfFkg--------~~y 121 (194)
T cd00094 63 GKIYFFKG-------------DKYWVYTGKNLEPGYPKPISDLGFPPTVKQIDAALRWPDNGKTYFFKG--------DKY 121 (194)
T ss_pred CEEEEECC-------------CEEEEEcCcccccCCCcchhhcCCCCCCCCccEEEEEcCCCEEEEEeC--------CEE
Confidence 89999988 35788876642221 11111111111111223233 589999987 567
Q ss_pred EEEECCCCCEEEeeC---C-CCCCCCcceeEEEEEC-CEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 115 HILDTDTLTWKELNT---S-GMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 115 ~~yD~~t~~W~~l~~---~-g~~p~~R~~hs~~~~~-~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
|+||...++...--+ . .-+..+..-.++.... +++|+|-|. ..|+||..+.+
T Consensus 122 ~ry~~~~~~v~~~yP~~i~~~w~g~p~~idaa~~~~~~~~yfF~g~--------~y~~~d~~~~~ 178 (194)
T cd00094 122 WRYDEKTQKMDPGYPKLIETDFPGVPDKVDAAFRWLDGYYYFFKGD--------QYWRFDPRSKE 178 (194)
T ss_pred EEEeCCCccccCCCCcchhhcCCCcCCCcceeEEeCCCcEEEEECC--------EEEEEeCccce
Confidence 888876654321100 0 0011222223344444 789999875 48999987765
No 74
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=86.16 E-value=44 Score=34.44 Aligned_cols=142 Identities=14% Similarity=0.135 Sum_probs=74.3
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+++||+.+.....+... +...... ...-+ ..|++....++ ..++|++|+.+...+.+..... ...
T Consensus 214 ~~i~v~d~~~g~~~~~~~~---~~~~~~~-~~spDg~~l~~~~~~~~----~~~i~~~d~~~~~~~~l~~~~~---~~~- 281 (417)
T TIGR02800 214 PEIYVQDLATGQREKVASF---PGMNGAP-AFSPDGSKLAVSLSKDG----NPDIYVMDLDGKQLTRLTNGPG---IDT- 281 (417)
T ss_pred cEEEEEECCCCCEEEeecC---CCCccce-EECCCCCEEEEEECCCC----CccEEEEECCCCCEEECCCCCC---CCC-
Confidence 5799999998876665432 1111111 11224 45655543322 2579999999988777754211 111
Q ss_pred eEEEEECCE-EEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccC
Q 011998 140 HSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALD 218 (473)
Q Consensus 140 hs~~~~~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~ 218 (473)
......+++ |++..... -...+|.+|+.+..++.+...+. ...... +. .+++.+++..... ...
T Consensus 282 ~~~~s~dg~~l~~~s~~~----g~~~iy~~d~~~~~~~~l~~~~~-----~~~~~~-~s--pdg~~i~~~~~~~---~~~ 346 (417)
T TIGR02800 282 EPSWSPDGKSIAFTSDRG----GSPQIYMMDADGGEVRRLTFRGG-----YNASPS-WS--PDGDLIAFVHREG---GGF 346 (417)
T ss_pred CEEECCCCCEEEEEECCC----CCceEEEEECCCCCEEEeecCCC-----CccCeE-EC--CCCCEEEEEEccC---Cce
Confidence 111122444 44433221 12479999999988887765321 111112 21 2455555554433 124
Q ss_pred cEEEEEccccc
Q 011998 219 DMYYLYTGLVN 229 (473)
Q Consensus 219 dv~~ld~~~~~ 229 (473)
.++.++.....
T Consensus 347 ~i~~~d~~~~~ 357 (417)
T TIGR02800 347 NIAVMDLDGGG 357 (417)
T ss_pred EEEEEeCCCCC
Confidence 68888877643
No 75
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=86.12 E-value=41 Score=34.34 Aligned_cols=108 Identities=20% Similarity=0.260 Sum_probs=62.1
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCc
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 110 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~ 110 (473)
.+.++.++++|+.+.. ..++.||..+. .|+.-... +...+.++.++.+|+. +.
T Consensus 59 ~~p~v~~~~v~v~~~~------------g~v~a~d~~tG~~~W~~~~~~------~~~~~p~v~~~~v~v~-~~------ 113 (377)
T TIGR03300 59 LQPAVAGGKVYAADAD------------GTVVALDAETGKRLWRVDLDE------RLSGGVGADGGLVFVG-TE------ 113 (377)
T ss_pred cceEEECCEEEEECCC------------CeEEEEEccCCcEeeeecCCC------CcccceEEcCCEEEEE-cC------
Confidence 3445667888876552 35899998766 58643221 1122334446777764 32
Q ss_pred cceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC--cEEEE
Q 011998 111 LSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKV 178 (473)
Q Consensus 111 ~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~~v 178 (473)
-..++.||..+.+ |+.-.. .. ...+.+..++.+|+..+ ...++.+|++++ .|+.-
T Consensus 114 ~g~l~ald~~tG~~~W~~~~~-----~~-~~~~p~v~~~~v~v~~~-------~g~l~a~d~~tG~~~W~~~ 172 (377)
T TIGR03300 114 KGEVIALDAEDGKELWRAKLS-----SE-VLSPPLVANGLVVVRTN-------DGRLTALDAATGERLWTYS 172 (377)
T ss_pred CCEEEEEECCCCcEeeeeccC-----ce-eecCCEEECCEEEEECC-------CCeEEEEEcCCCceeeEEc
Confidence 2468999987665 764422 11 12223445677776432 134899999876 47653
No 76
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=86.10 E-value=24 Score=34.84 Aligned_cols=107 Identities=20% Similarity=0.181 Sum_probs=71.6
Q ss_pred ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEE
Q 011998 38 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 38 ~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
.++.+|.--|.-. -+.+.+||+.+.+-.+.... |..-++=.++.++++||..--. ....++|
T Consensus 54 ~~g~LyESTG~yG---------~S~l~~~d~~tg~~~~~~~l---~~~~FgEGit~~~d~l~qLTWk------~~~~f~y 115 (264)
T PF05096_consen 54 DDGTLYESTGLYG---------QSSLRKVDLETGKVLQSVPL---PPRYFGEGITILGDKLYQLTWK------EGTGFVY 115 (264)
T ss_dssp ETTEEEEEECSTT---------EEEEEEEETTTSSEEEEEE----TTT--EEEEEEETTEEEEEESS------SSEEEEE
T ss_pred CCCEEEEeCCCCC---------cEEEEEEECCCCcEEEEEEC---CccccceeEEEECCEEEEEEec------CCeEEEE
Confidence 4577777777421 35789999999876555444 6667888899999999998653 3557999
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
|..+. +.+.. .+.+..+...+..+..|++--|. +.++.+|+++.+
T Consensus 116 d~~tl--~~~~~---~~y~~EGWGLt~dg~~Li~SDGS-------~~L~~~dP~~f~ 160 (264)
T PF05096_consen 116 DPNTL--KKIGT---FPYPGEGWGLTSDGKRLIMSDGS-------SRLYFLDPETFK 160 (264)
T ss_dssp ETTTT--EEEEE---EE-SSS--EEEECSSCEEEE-SS-------SEEEEE-TTT-S
T ss_pred ccccc--eEEEE---EecCCcceEEEcCCCEEEEECCc-------cceEEECCcccc
Confidence 99875 44443 45567888888777889888774 458999988643
No 77
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=85.85 E-value=35 Score=35.33 Aligned_cols=140 Identities=15% Similarity=0.219 Sum_probs=77.4
Q ss_pred CcEEEEECCCC--eEEecccCCC-----CCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGE-----GPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~-----~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
..+++||..+. .|+.-..... .+..+...+.++.+++||+.+. ...++.+|.++. .|+.
T Consensus 79 g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~v~~~~v~v~~~------------~g~l~ald~~tG~~~W~~ 146 (394)
T PRK11138 79 GLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVTVAGGKVYIGSE------------KGQVYALNAEDGEVAWQT 146 (394)
T ss_pred CeEEEEECCCCcEeeEEcCCCcccccccccccccccccEEECCEEEEEcC------------CCEEEEEECCCCCCcccc
Confidence 46889998865 6875321100 0012333345667888887543 136899998775 6865
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEe
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
-.. + + ...+.++.++.+|+..+ -..++.||.++.+ |+.-... .....+...+-++.++.+|+..
T Consensus 147 ~~~-~----~-~~ssP~v~~~~v~v~~~-------~g~l~ald~~tG~~~W~~~~~~-~~~~~~~~~sP~v~~~~v~~~~ 212 (394)
T PRK11138 147 KVA-G----E-ALSRPVVSDGLVLVHTS-------NGMLQALNESDGAVKWTVNLDV-PSLTLRGESAPATAFGGAIVGG 212 (394)
T ss_pred cCC-C----c-eecCCEEECCEEEEECC-------CCEEEEEEccCCCEeeeecCCC-CcccccCCCCCEEECCEEEEEc
Confidence 322 1 1 12223455788887433 2468999998776 7654320 0011122223344566666543
Q ss_pred cccCCCCccccEEEEeCCCC--cEEE
Q 011998 154 GFTDSQNLYDDLYMIDVDSG--LWTK 177 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~--~W~~ 177 (473)
+. ..++.+|++++ .|+.
T Consensus 213 ~~-------g~v~a~d~~~G~~~W~~ 231 (394)
T PRK11138 213 DN-------GRVSAVLMEQGQLIWQQ 231 (394)
T ss_pred CC-------CEEEEEEccCChhhhee
Confidence 31 34788888876 4864
No 78
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=84.71 E-value=11 Score=39.45 Aligned_cols=99 Identities=12% Similarity=0.039 Sum_probs=61.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
-+|.||..+.+-.++.....++.+-...-.+...+.++++-|. ...++++-..|+.|---- ..+..
T Consensus 281 y~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~-----------~G~I~lLhakT~eli~s~---KieG~ 346 (514)
T KOG2055|consen 281 YLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGN-----------NGHIHLLHAKTKELITSF---KIEGV 346 (514)
T ss_pred EEEEeeccccccccccCCCCcccchhheeEecCCCCeEEEccc-----------CceEEeehhhhhhhhhee---eeccE
Confidence 4789999999998886544444333333345556667777773 235777777888774211 11222
Q ss_pred ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEE
Q 011998 86 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 125 (473)
Q Consensus 86 R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~ 125 (473)
....+....+..||+.||. ..+|++|+.++.-.
T Consensus 347 v~~~~fsSdsk~l~~~~~~-------GeV~v~nl~~~~~~ 379 (514)
T KOG2055|consen 347 VSDFTFSSDSKELLASGGT-------GEVYVWNLRQNSCL 379 (514)
T ss_pred EeeEEEecCCcEEEEEcCC-------ceEEEEecCCcceE
Confidence 3334444446678888773 47899999988543
No 79
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=84.21 E-value=39 Score=32.19 Aligned_cols=154 Identities=11% Similarity=0.033 Sum_probs=78.3
Q ss_pred cEEEEECCCCeEEecccC--CCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~--~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+.++|+.+.+++.+... +..+..|..-.++.-++.||+---..... .. .....+|++++. .+...+...
T Consensus 61 ~~~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~-~~--~~~g~v~~~~~~-~~~~~~~~~---- 132 (246)
T PF08450_consen 61 GIAVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGA-SG--IDPGSVYRIDPD-GKVTVVADG---- 132 (246)
T ss_dssp CEEEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCT-TC--GGSEEEEEEETT-SEEEEEEEE----
T ss_pred ceEEEecCCCcEEEEeeccCCCcccCCCceEEEcCCCCEEEEecCCCcc-cc--ccccceEEECCC-CeEEEEecC----
Confidence 456779999999876432 11134444444444467877763321100 00 001579999999 666655432
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCC--CCEEEeeCCCCCCCCcceeE-EEEE-CCEEEEEecccC
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHS-TVAF-GKNLFVFGGFTD 157 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~p~~R~~hs-~~~~-~~~LyV~GG~~~ 157 (473)
.. .--.++.. ++.||+.- .....+|+|++.. ..+........++......- +++- +++|||..-.
T Consensus 133 ~~-~pNGi~~s~dg~~lyv~d------s~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~-- 203 (246)
T PF08450_consen 133 LG-FPNGIAFSPDGKTLYVAD------SFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG-- 203 (246)
T ss_dssp ES-SEEEEEEETTSSEEEEEE------TTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET--
T ss_pred cc-cccceEECCcchheeecc------cccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC--
Confidence 11 12333333 44677742 2456699998853 33443322111222221222 3332 5788886321
Q ss_pred CCCccccEEEEeCCCCcEEEEee
Q 011998 158 SQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 158 ~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
.+.|++||++...-..+..
T Consensus 204 ----~~~I~~~~p~G~~~~~i~~ 222 (246)
T PF08450_consen 204 ----GGRIVVFDPDGKLLREIEL 222 (246)
T ss_dssp ----TTEEEEEETTSCEEEEEE-
T ss_pred ----CCEEEEECCCccEEEEEcC
Confidence 2359999999666666664
No 80
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=81.79 E-value=69 Score=33.21 Aligned_cols=197 Identities=15% Similarity=0.131 Sum_probs=97.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE--EeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK--RATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~--~l~~~g~ 81 (473)
..++++|+.+++...- ..+.++... ++..+ ++.+++.............+...+|++.+.+..-+ .+-...+
T Consensus 150 ~~l~v~Dl~tg~~l~d----~i~~~~~~~-~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~ 224 (414)
T PF02897_consen 150 YTLRVFDLETGKFLPD----GIENPKFSS-VSWSDDGKGFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPD 224 (414)
T ss_dssp EEEEEEETTTTEEEEE----EEEEEESEE-EEECTTSSEEEEEECSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TT
T ss_pred EEEEEEECCCCcCcCC----cccccccce-EEEeCCCCEEEEEEeCcccccccCCCCcEEEEEECCCChHhCeeEEeecC
Confidence 3577888888755432 112222222 44444 35555555433211002334568999998877543 2222211
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCC-----CEEEeeCCCCCCCCcceeEEEEECCEEEEEeccc
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL-----TWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 156 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~-----~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~ 156 (473)
.+. ++......-+++.+++.-..... .+++|++|.... .|..+.. +..-..+.+...++.+|+.-..
T Consensus 225 ~~~-~~~~~~~s~d~~~l~i~~~~~~~--~s~v~~~d~~~~~~~~~~~~~l~~----~~~~~~~~v~~~~~~~yi~Tn~- 296 (414)
T PF02897_consen 225 EPF-WFVSVSRSKDGRYLFISSSSGTS--ESEVYLLDLDDGGSPDAKPKLLSP----REDGVEYYVDHHGDRLYILTND- 296 (414)
T ss_dssp CTT-SEEEEEE-TTSSEEEEEEESSSS--EEEEEEEECCCTTTSS-SEEEEEE----SSSS-EEEEEEETTEEEEEE-T-
T ss_pred CCc-EEEEEEecCcccEEEEEEEcccc--CCeEEEEeccccCCCcCCcEEEeC----CCCceEEEEEccCCEEEEeeCC-
Confidence 121 12222233344433332222221 489999999875 8988874 2333334444558889887653
Q ss_pred CCCCccccEEEEeCCCCc---EEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 157 DSQNLYDDLYMIDVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t~~---W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
......+..+++.+.. |..+-.. +........+.+ .+++|++.-= ......+.+++..
T Consensus 297 --~a~~~~l~~~~l~~~~~~~~~~~l~~---~~~~~~l~~~~~---~~~~Lvl~~~----~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 297 --DAPNGRLVAVDLADPSPAEWWTVLIP---EDEDVSLEDVSL---FKDYLVLSYR----ENGSSRLRVYDLD 357 (414)
T ss_dssp --T-TT-EEEEEETTSTSGGGEEEEEE-----SSSEEEEEEEE---ETTEEEEEEE----ETTEEEEEEEETT
T ss_pred --CCCCcEEEEecccccccccceeEEcC---CCCceeEEEEEE---ECCEEEEEEE----ECCccEEEEEECC
Confidence 2345678889988765 7743331 222222333333 2677776532 1234567777766
No 81
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=81.26 E-value=67 Score=32.76 Aligned_cols=130 Identities=18% Similarity=0.227 Sum_probs=66.1
Q ss_pred eEEEEECCCC--eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCC-
Q 011998 62 DLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP- 136 (473)
Q Consensus 62 dv~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~- 136 (473)
.++.+|+.+. .|+.-... .....+...+.+..++.+| +|..+ ..++.+|+.+.+ |+.-.. .+..
T Consensus 156 ~l~a~d~~tG~~~W~~~~~~-~~~~~~~~~sp~~~~~~v~-~~~~~------g~v~ald~~tG~~~W~~~~~---~~~g~ 224 (377)
T TIGR03300 156 RLTALDAATGERLWTYSRVT-PALTLRGSASPVIADGGVL-VGFAG------GKLVALDLQTGQPLWEQRVA---LPKGR 224 (377)
T ss_pred eEEEEEcCCCceeeEEccCC-CceeecCCCCCEEECCEEE-EECCC------CEEEEEEccCCCEeeeeccc---cCCCC
Confidence 5888998765 57643221 1001122233445566554 44322 358889987764 754321 1111
Q ss_pred ----c---ceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC--cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEE
Q 011998 137 ----R---AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFI 207 (473)
Q Consensus 137 ----R---~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~ 207 (473)
| ...+.+..++.+|+.... ..+++||++++ .|+.-.. . .....+ .++++|+.
T Consensus 225 ~~~~~~~~~~~~p~~~~~~vy~~~~~-------g~l~a~d~~tG~~~W~~~~~-----~----~~~p~~---~~~~vyv~ 285 (377)
T TIGR03300 225 TELERLVDVDGDPVVDGGQVYAVSYQ-------GRVAALDLRSGRVLWKRDAS-----S----YQGPAV---DDNRLYVT 285 (377)
T ss_pred CchhhhhccCCccEEECCEEEEEEcC-------CEEEEEECCCCcEEEeeccC-----C----ccCceE---eCCEEEEE
Confidence 1 122334557777775432 34899999876 4754311 0 111122 36788876
Q ss_pred cccCCCCCccCcEEEEEcccc
Q 011998 208 GGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 208 GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.. -..++.+|..+.
T Consensus 286 ~~-------~G~l~~~d~~tG 299 (377)
T TIGR03300 286 DA-------DGVVVALDRRSG 299 (377)
T ss_pred CC-------CCeEEEEECCCC
Confidence 42 134777776543
No 82
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=80.48 E-value=67 Score=32.27 Aligned_cols=105 Identities=18% Similarity=0.220 Sum_probs=57.2
Q ss_pred eeCeEEEEECCCCeEEEeecC-CCCCCCceeeEEE-EE---CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCC
Q 011998 59 YYNDLYILNTETFVWKRATTS-GNPPSARDSHTCS-SW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMV 133 (473)
Q Consensus 59 ~~~dv~~yd~~t~~W~~l~~~-g~~P~~R~~hs~~-~~---~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~ 133 (473)
-++.+..||.++.+-+.+-.- -.-+.--++-.+- .+ +++||+.-+ ++. .---+|..|..+..=+++.. -
T Consensus 76 KYSHVH~yd~e~~~VrLLWkesih~~~~WaGEVSdIlYdP~~D~LLlAR~-DGh--~nLGvy~ldr~~g~~~~L~~---~ 149 (339)
T PF09910_consen 76 KYSHVHEYDTENDSVRLLWKESIHDKTKWAGEVSDILYDPYEDRLLLARA-DGH--ANLGVYSLDRRTGKAEKLSS---N 149 (339)
T ss_pred ccceEEEEEcCCCeEEEEEecccCCccccccchhheeeCCCcCEEEEEec-CCc--ceeeeEEEcccCCceeeccC---C
Confidence 357899999988864333211 1112222222221 22 567777544 232 23458999999998887764 2
Q ss_pred CCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 134 LSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 134 p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
|.+. .+.+++..+| |...-..-...+.+||+.+++|
T Consensus 150 ps~K---G~~~~D~a~F---~i~~~~~g~~~i~~~Dli~~~~ 185 (339)
T PF09910_consen 150 PSLK---GTLVHDYACF---GINNFHKGVSGIHCLDLISGKW 185 (339)
T ss_pred CCcC---ceEeeeeEEE---eccccccCCceEEEEEccCCeE
Confidence 3221 2222222222 2222233457799999999999
No 83
>PRK02889 tolB translocation protein TolB; Provisional
Probab=79.19 E-value=88 Score=32.84 Aligned_cols=147 Identities=14% Similarity=0.080 Sum_probs=72.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+|++|+.+.+=..+. ..+. ...+.+..-++ +|++..... -..++|.+|..+...+++... .
T Consensus 220 ~~I~~~dl~~g~~~~l~---~~~g-~~~~~~~SPDG~~la~~~~~~---------g~~~Iy~~d~~~~~~~~lt~~---~ 283 (427)
T PRK02889 220 PVVYVHDLATGRRRVVA---NFKG-SNSAPAWSPDGRTLAVALSRD---------GNSQIYTVNADGSGLRRLTQS---S 283 (427)
T ss_pred cEEEEEECCCCCEEEee---cCCC-CccceEECCCCCEEEEEEccC---------CCceEEEEECCCCCcEECCCC---C
Confidence 35788888776544442 1111 11111222234 454443321 125899999988776666332 1
Q ss_pred CCceeeEEEEECC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeE-EEEECCEEEEEecccCCCCc
Q 011998 84 SARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS-TVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 84 ~~R~~hs~~~~~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs-~~~~~~~LyV~GG~~~~~~~ 161 (473)
.........-++ .|++.....+ ...+|.++..+...+.+...+ .+... ...-+++.+++..... +
T Consensus 284 -~~~~~~~wSpDG~~l~f~s~~~g----~~~Iy~~~~~~g~~~~lt~~g-----~~~~~~~~SpDG~~Ia~~s~~~-g-- 350 (427)
T PRK02889 284 -GIDTEPFFSPDGRSIYFTSDRGG----APQIYRMPASGGAAQRVTFTG-----SYNTSPRISPDGKLLAYISRVG-G-- 350 (427)
T ss_pred -CCCcCeEEcCCCCEEEEEecCCC----CcEEEEEECCCCceEEEecCC-----CCcCceEECCCCCEEEEEEccC-C--
Confidence 111111222244 4544332222 247899998888877775321 11111 2222444333333211 1
Q ss_pred cccEEEEeCCCCcEEEEee
Q 011998 162 YDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~ 180 (473)
...++++|+.+...+.+..
T Consensus 351 ~~~I~v~d~~~g~~~~lt~ 369 (427)
T PRK02889 351 AFKLYVQDLATGQVTALTD 369 (427)
T ss_pred cEEEEEEECCCCCeEEccC
Confidence 1369999999888777653
No 84
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=78.71 E-value=83 Score=34.76 Aligned_cols=158 Identities=12% Similarity=0.133 Sum_probs=86.0
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCc
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYY 110 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~ 110 (473)
++..-++.++.+|-+. ...+|++.++.+ .++....+.|..+...+...+ ++++++.- ..
T Consensus 388 ~aiSPdg~~Ia~st~~----------~~~iy~L~~~~~--vk~~~v~~~~~~~~~a~~i~ftid~~k~~~~s------~~ 449 (691)
T KOG2048|consen 388 AAISPDGNLIAISTVS----------RTKIYRLQPDPN--VKVINVDDVPLALLDASAISFTIDKNKLFLVS------KN 449 (691)
T ss_pred eccCCCCCEEEEeecc----------ceEEEEeccCcc--eeEEEeccchhhhccceeeEEEecCceEEEEe------cc
Confidence 3333456777777641 234566655543 222222345666654444333 67888765 23
Q ss_pred cceEEEEECCCCCEEEeeCCC-C-CCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCc
Q 011998 111 LSDVHILDTDTLTWKELNTSG-M-VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSAR 188 (473)
Q Consensus 111 ~ndv~~yD~~t~~W~~l~~~g-~-~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R 188 (473)
..+++.++.++.+..++.... . ...+-........++.|-+.++. ..+++|++++.+-..+... ++ +
T Consensus 450 ~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yiaa~~t~-------g~I~v~nl~~~~~~~l~~r--ln--~ 518 (691)
T KOG2048|consen 450 IFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIAAISTR-------GQIFVYNLETLESHLLKVR--LN--I 518 (691)
T ss_pred cceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEEEEecc-------ceEEEEEcccceeecchhc--cC--c
Confidence 456888888887777665411 1 11122222223346678888754 3499999999876665532 11 2
Q ss_pred ceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 189 FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 189 ~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+ .+++...+...+.|++. ..-+.++.||++..
T Consensus 519 ~-vTa~~~~~~~~~~lvva-------ts~nQv~efdi~~~ 550 (691)
T KOG2048|consen 519 D-VTAAAFSPFVRNRLVVA-------TSNNQVFEFDIEAR 550 (691)
T ss_pred c-eeeeeccccccCcEEEE-------ecCCeEEEEecchh
Confidence 2 33333332335666663 34466888888543
No 85
>PRK00178 tolB translocation protein TolB; Provisional
Probab=77.88 E-value=93 Score=32.42 Aligned_cols=143 Identities=13% Similarity=0.120 Sum_probs=73.8
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEE-EEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCS-SWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..+|++|+.+.+-+.+... +. ...... .-+ .+|++..-.++ ..++|++|+.+..++++... + ...
T Consensus 223 ~~l~~~~l~~g~~~~l~~~---~g--~~~~~~~SpDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~ 289 (430)
T PRK00178 223 PRIFVQNLDTGRREQITNF---EG--LNGAPAWSPDGSKLAFVLSKDG----NPEIYVMDLASRQLSRVTNH---P-AID 289 (430)
T ss_pred CEEEEEECCCCCEEEccCC---CC--CcCCeEECCCCCEEEEEEccCC----CceEEEEECCCCCeEEcccC---C-CCc
Confidence 4799999999887776432 11 111111 113 45544332222 26899999999998877531 1 111
Q ss_pred eeEEEEECC-EEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCcc
Q 011998 139 GHSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEAL 217 (473)
Q Consensus 139 ~hs~~~~~~-~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~ 217 (473)
......-++ +|++.... .-...+|.+|+.++.++++...+ .+... ..+.+ .++.|++...... .
T Consensus 290 ~~~~~spDg~~i~f~s~~----~g~~~iy~~d~~~g~~~~lt~~~-----~~~~~-~~~Sp-dg~~i~~~~~~~~----~ 354 (430)
T PRK00178 290 TEPFWGKDGRTLYFTSDR----GGKPQIYKVNVNGGRAERVTFVG-----NYNAR-PRLSA-DGKTLVMVHRQDG----N 354 (430)
T ss_pred CCeEECCCCCEEEEEECC----CCCceEEEEECCCCCEEEeecCC-----CCccc-eEECC-CCCEEEEEEccCC----c
Confidence 111122234 45443221 11246999999999988886432 11111 11211 2445554432221 2
Q ss_pred CcEEEEEcccccee
Q 011998 218 DDMYYLYTGLVNER 231 (473)
Q Consensus 218 ~dv~~ld~~~~~w~ 231 (473)
.+++.+|.......
T Consensus 355 ~~l~~~dl~tg~~~ 368 (430)
T PRK00178 355 FHVAAQDLQRGSVR 368 (430)
T ss_pred eEEEEEECCCCCEE
Confidence 35888887765443
No 86
>PRK05137 tolB translocation protein TolB; Provisional
Probab=77.60 E-value=98 Score=32.50 Aligned_cols=106 Identities=17% Similarity=0.138 Sum_probs=57.6
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCccee
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 140 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~h 140 (473)
..+|++|+.+.+.+.+... +..-......-.+.+|++....++ ..++|++|+.+...+.+... +. ....
T Consensus 226 ~~i~~~dl~~g~~~~l~~~---~g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~Lt~~---~~-~~~~ 294 (435)
T PRK05137 226 PRVYLLDLETGQRELVGNF---PGMTFAPRFSPDGRKVVMSLSQGG----NTDIYTMDLRSGTTTRLTDS---PA-IDTS 294 (435)
T ss_pred CEEEEEECCCCcEEEeecC---CCcccCcEECCCCCEEEEEEecCC----CceEEEEECCCCceEEccCC---CC-ccCc
Confidence 5799999999888777533 211111111112345554433322 36799999999887776531 11 1111
Q ss_pred EEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 141 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 141 s~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
....-+++-++|..... -...+|++|+.+...+++..
T Consensus 295 ~~~spDG~~i~f~s~~~---g~~~Iy~~d~~g~~~~~lt~ 331 (435)
T PRK05137 295 PSYSPDGSQIVFESDRS---GSPQLYVMNADGSNPRRISF 331 (435)
T ss_pred eeEcCCCCEEEEEECCC---CCCeEEEEECCCCCeEEeec
Confidence 12222444333432111 12469999998888877764
No 87
>PRK04922 tolB translocation protein TolB; Provisional
Probab=77.46 E-value=99 Score=32.47 Aligned_cols=143 Identities=11% Similarity=0.153 Sum_probs=71.9
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+|++|+.+.+-+.+... +.. .......- +.+|++....++ ..++|++|+.+.+.+.+... . ....
T Consensus 228 ~~l~~~dl~~g~~~~l~~~---~g~-~~~~~~SpDG~~l~~~~s~~g----~~~Iy~~d~~~g~~~~lt~~---~-~~~~ 295 (433)
T PRK04922 228 SAIYVQDLATGQRELVASF---RGI-NGAPSFSPDGRRLALTLSRDG----NPEIYVMDLGSRQLTRLTNH---F-GIDT 295 (433)
T ss_pred cEEEEEECCCCCEEEeccC---CCC-ccCceECCCCCEEEEEEeCCC----CceEEEEECCCCCeEECccC---C-CCcc
Confidence 4699999998887766432 111 11111122 345554433322 25799999999887666431 1 1111
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCc
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 219 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~d 219 (473)
.....-+++.++|..... + ...+|.+|+.++.++++...+ .+... ..+.+ .++.|++..+... -..
T Consensus 296 ~~~~spDG~~l~f~sd~~-g--~~~iy~~dl~~g~~~~lt~~g-----~~~~~-~~~Sp-DG~~Ia~~~~~~~----~~~ 361 (433)
T PRK04922 296 EPTWAPDGKSIYFTSDRG-G--RPQIYRVAASGGSAERLTFQG-----NYNAR-ASVSP-DGKKIAMVHGSGG----QYR 361 (433)
T ss_pred ceEECCCCCEEEEEECCC-C--CceEEEEECCCCCeEEeecCC-----CCccC-EEECC-CCCEEEEEECCCC----cee
Confidence 111222344333332111 1 246999999998888876532 11111 12211 2445555433211 126
Q ss_pred EEEEEccccc
Q 011998 220 MYYLYTGLVN 229 (473)
Q Consensus 220 v~~ld~~~~~ 229 (473)
++.++.....
T Consensus 362 I~v~d~~~g~ 371 (433)
T PRK04922 362 IAVMDLSTGS 371 (433)
T ss_pred EEEEECCCCC
Confidence 7888876544
No 88
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=77.00 E-value=96 Score=32.11 Aligned_cols=149 Identities=13% Similarity=0.028 Sum_probs=82.3
Q ss_pred eCeEEEEECCCC-----eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC---EE-EeeCC
Q 011998 60 YNDLYILNTETF-----VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT---WK-ELNTS 130 (473)
Q Consensus 60 ~~dv~~yd~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~---W~-~l~~~ 130 (473)
.+++|.+|.... .|..+... ..-..+.+...++.+|+.-..+. ....+..+++.... |. .+.+
T Consensus 251 ~s~v~~~d~~~~~~~~~~~~~l~~~----~~~~~~~v~~~~~~~yi~Tn~~a---~~~~l~~~~l~~~~~~~~~~~l~~- 322 (414)
T PF02897_consen 251 ESEVYLLDLDDGGSPDAKPKLLSPR----EDGVEYYVDHHGDRLYILTNDDA---PNGRLVAVDLADPSPAEWWTVLIP- 322 (414)
T ss_dssp EEEEEEEECCCTTTSS-SEEEEEES----SSS-EEEEEEETTEEEEEE-TT----TT-EEEEEETTSTSGGGEEEEEE--
T ss_pred CCeEEEEeccccCCCcCCcEEEeCC----CCceEEEEEccCCEEEEeeCCCC---CCcEEEEecccccccccceeEEcC-
Confidence 378999999875 89888652 22233444455999999877433 34678889988775 66 4432
Q ss_pred CCCCCC-cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcc
Q 011998 131 GMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 131 g~~p~~-R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
+.. ..--.+...+++|++.-=. .....+.+|++. ..|...... .|.. ....+.......+...|.+.+
T Consensus 323 ---~~~~~~l~~~~~~~~~Lvl~~~~----~~~~~l~v~~~~-~~~~~~~~~--~p~~-g~v~~~~~~~~~~~~~~~~ss 391 (414)
T PF02897_consen 323 ---EDEDVSLEDVSLFKDYLVLSYRE----NGSSRLRVYDLD-DGKESREIP--LPEA-GSVSGVSGDFDSDELRFSYSS 391 (414)
T ss_dssp ----SSSEEEEEEEEETTEEEEEEEE----TTEEEEEEEETT--TEEEEEEE--SSSS-SEEEEEES-TT-SEEEEEEEE
T ss_pred ---CCCceeEEEEEEECCEEEEEEEE----CCccEEEEEECC-CCcEEeeec--CCcc-eEEeccCCCCCCCEEEEEEeC
Confidence 222 2334455667887766432 235679999988 334444431 2222 112222222222334444455
Q ss_pred cCCCCCccCcEEEEEcccccee
Q 011998 210 CNKSLEALDDMYYLYTGLVNER 231 (473)
Q Consensus 210 ~~~~~~~~~dv~~ld~~~~~w~ 231 (473)
.. .-..+|.||..+.+-.
T Consensus 392 ~~----~P~~~y~~d~~t~~~~ 409 (414)
T PF02897_consen 392 FT----TPPTVYRYDLATGELT 409 (414)
T ss_dssp TT----EEEEEEEEETTTTCEE
T ss_pred CC----CCCEEEEEECCCCCEE
Confidence 33 3357888888876543
No 89
>PRK01742 tolB translocation protein TolB; Provisional
Probab=75.09 E-value=1.1e+02 Score=31.99 Aligned_cols=119 Identities=11% Similarity=0.106 Sum_probs=59.4
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCE-EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCccee
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH 140 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~-IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~h 140 (473)
++|.+|+.+....++... .. ........-+++ |++....++. -.+|.++..+..-+.+.. ..+ .
T Consensus 273 ~Iy~~d~~~~~~~~lt~~---~~-~~~~~~wSpDG~~i~f~s~~~g~----~~I~~~~~~~~~~~~l~~------~~~-~ 337 (429)
T PRK01742 273 NIYVMGANGGTPSQLTSG---AG-NNTEPSWSPDGQSILFTSDRSGS----PQVYRMSASGGGASLVGG------RGY-S 337 (429)
T ss_pred EEEEEECCCCCeEeeccC---CC-CcCCEEECCCCCEEEEEECCCCC----ceEEEEECCCCCeEEecC------CCC-C
Confidence 689999988877766432 11 111111122444 5444333222 478888876664433321 011 1
Q ss_pred EEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC
Q 011998 141 STVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 141 s~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
....-+++.+++.+. +.++.+|+.+..++.+.... .. .... + ..+++++++++..
T Consensus 338 ~~~SpDG~~ia~~~~-------~~i~~~Dl~~g~~~~lt~~~-----~~-~~~~-~--sPdG~~i~~~s~~ 392 (429)
T PRK01742 338 AQISADGKTLVMING-------DNVVKQDLTSGSTEVLSSTF-----LD-ESPS-I--SPNGIMIIYSSTQ 392 (429)
T ss_pred ccCCCCCCEEEEEcC-------CCEEEEECCCCCeEEecCCC-----CC-CCce-E--CCCCCEEEEEEcC
Confidence 112224443333332 35888999999888765321 10 1111 2 1367777777654
No 90
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=72.76 E-value=64 Score=32.27 Aligned_cols=119 Identities=14% Similarity=0.132 Sum_probs=71.6
Q ss_pred CcEEEEECCCC-----eEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe-EEEeec
Q 011998 5 RDLHILDTSSH-----TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATT 78 (473)
Q Consensus 5 ~dv~~yD~~t~-----~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~ 78 (473)
..+++|+.... +++.+. .....-.-.+++.+++++++.-| +.+++|++.... |.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~---~~~~~g~V~ai~~~~~~lv~~~g-------------~~l~v~~l~~~~~l~~~~~ 125 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIH---STEVKGPVTAICSFNGRLVVAVG-------------NKLYVYDLDNSKTLLKKAF 125 (321)
T ss_dssp EEEEEEEECSS-----EEEEEE---EEEESS-EEEEEEETTEEEEEET-------------TEEEEEEEETTSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEE---EEeecCcceEhhhhCCEEEEeec-------------CEEEEEEccCcccchhhhe
Confidence 45788888874 555442 11222235577778999777766 367888887777 877765
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCCCCCCCccce--EEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEE
Q 011998 79 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSD--VHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVF 152 (473)
Q Consensus 79 ~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~nd--v~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~ 152 (473)
. ..+-...++.+.++.|+| |- .... ++.|+....+-..+.. -..++.-.++..+ ++..++.
T Consensus 126 ~---~~~~~i~sl~~~~~~I~v-gD------~~~sv~~~~~~~~~~~l~~va~---d~~~~~v~~~~~l~d~~~~i~ 189 (321)
T PF03178_consen 126 Y---DSPFYITSLSVFKNYILV-GD------AMKSVSLLRYDEENNKLILVAR---DYQPRWVTAAEFLVDEDTIIV 189 (321)
T ss_dssp E----BSSSEEEEEEETTEEEE-EE------SSSSEEEEEEETTTE-EEEEEE---ESS-BEEEEEEEE-SSSEEEE
T ss_pred e---cceEEEEEEeccccEEEE-EE------cccCEEEEEEEccCCEEEEEEe---cCCCccEEEEEEecCCcEEEE
Confidence 4 333356666777887665 32 2333 4466876666777764 4557777777666 5543333
No 91
>PRK02889 tolB translocation protein TolB; Provisional
Probab=72.40 E-value=1.3e+02 Score=31.52 Aligned_cols=105 Identities=14% Similarity=0.078 Sum_probs=54.9
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+|++|+.+.+=..+... +. ........-+ .+|++....++ ..++|.+|..+...+++... . ....
T Consensus 220 ~~I~~~dl~~g~~~~l~~~---~g-~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~d~~~~~~~~lt~~---~-~~~~ 287 (427)
T PRK02889 220 PVVYVHDLATGRRRVVANF---KG-SNSAPAWSPDGRTLAVALSRDG----NSQIYTVNADGSGLRRLTQS---S-GIDT 287 (427)
T ss_pred cEEEEEECCCCCEEEeecC---CC-CccceEECCCCCEEEEEEccCC----CceEEEEECCCCCcEECCCC---C-CCCc
Confidence 4699999988765555322 11 1111111224 45555444332 36899999988776666431 1 1111
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
.....-+++.++|..... -...+|.+++.+...+.+..
T Consensus 288 ~~~wSpDG~~l~f~s~~~---g~~~Iy~~~~~~g~~~~lt~ 325 (427)
T PRK02889 288 EPFFSPDGRSIYFTSDRG---GAPQIYRMPASGGAAQRVTF 325 (427)
T ss_pred CeEEcCCCCEEEEEecCC---CCcEEEEEECCCCceEEEec
Confidence 112222444333432111 12468999988888877764
No 92
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=67.50 E-value=50 Score=32.57 Aligned_cols=93 Identities=18% Similarity=0.272 Sum_probs=62.7
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+.+.+||+.|++-.... ++|..-++-.++.++++||..-=. ....++||..+. +++... +.
T Consensus 68 S~l~~~d~~tg~~~~~~---~l~~~~FgEGit~~~d~l~qLTWk-----------~~~~f~yd~~tl--~~~~~~---~y 128 (264)
T PF05096_consen 68 SSLRKVDLETGKVLQSV---PLPPRYFGEGITILGDKLYQLTWK-----------EGTGFVYDPNTL--KKIGTF---PY 128 (264)
T ss_dssp EEEEEEETTTSSEEEEE---E-TTT--EEEEEEETTEEEEEESS-----------SSEEEEEETTTT--EEEEEE---E-
T ss_pred EEEEEEECCCCcEEEEE---ECCccccceeEEEECCEEEEEEec-----------CCeEEEEccccc--eEEEEE---ec
Confidence 56889999998766442 567777888999999999998432 246899999875 344332 44
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 123 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~ 123 (473)
+..+-.++..+..||+--| .+.++.+|+.+.+
T Consensus 129 ~~EGWGLt~dg~~Li~SDG-------S~~L~~~dP~~f~ 160 (264)
T PF05096_consen 129 PGEGWGLTSDGKRLIMSDG-------SSRLYFLDPETFK 160 (264)
T ss_dssp SSS--EEEECSSCEEEE-S-------SSEEEEE-TTT-S
T ss_pred CCcceEEEcCCCEEEEECC-------ccceEEECCcccc
Confidence 5678888888888888766 4778999998765
No 93
>PRK13684 Ycf48-like protein; Provisional
Probab=66.56 E-value=1.5e+02 Score=30.02 Aligned_cols=154 Identities=12% Similarity=0.088 Sum_probs=75.2
Q ss_pred CCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEE-ECCCCeEEEeecCCCCCCCceeeEEE
Q 011998 14 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYIL-NTETFVWKRATTSGNPPSARDSHTCS 92 (473)
Q Consensus 14 t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~y-d~~t~~W~~l~~~g~~P~~R~~hs~~ 92 (473)
-.+|+.+.. +..-.-+.+....+..|+..|.. -.++.- |....+|+.+.. +..+.-+++.
T Consensus 161 G~tW~~~~~----~~~g~~~~i~~~~~g~~v~~g~~-----------G~i~~s~~~gg~tW~~~~~----~~~~~l~~i~ 221 (334)
T PRK13684 161 GKNWEALVE----DAAGVVRNLRRSPDGKYVAVSSR-----------GNFYSTWEPGQTAWTPHQR----NSSRRLQSMG 221 (334)
T ss_pred CCCceeCcC----CCcceEEEEEECCCCeEEEEeCC-----------ceEEEEcCCCCCeEEEeeC----CCcccceeee
Confidence 468887742 21223344444444444444421 123332 444568998854 3344445554
Q ss_pred EE-CCEEEEEeCCCCCCCccceEEEEE-C-CCCCEEEeeCCCCCCCC---cceeEEEEE-CCEEEEEecccCCCCccccE
Q 011998 93 SW-KNKIIVIGGEDGHDYYLSDVHILD-T-DTLTWKELNTSGMVLSP---RAGHSTVAF-GKNLFVFGGFTDSQNLYDDL 165 (473)
Q Consensus 93 ~~-~~~IyV~GG~~~~~~~~ndv~~yD-~-~t~~W~~l~~~g~~p~~---R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv 165 (473)
.. ++.++++|.. +. .++. . .-..|+.+.. |.. ...++++.. ++.+|+.|... .+
T Consensus 222 ~~~~g~~~~vg~~-G~-------~~~~s~d~G~sW~~~~~----~~~~~~~~l~~v~~~~~~~~~~~G~~G-------~v 282 (334)
T PRK13684 222 FQPDGNLWMLARG-GQ-------IRFNDPDDLESWSKPII----PEITNGYGYLDLAYRTPGEIWAGGGNG-------TL 282 (334)
T ss_pred EcCCCCEEEEecC-CE-------EEEccCCCCCccccccC----CccccccceeeEEEcCCCCEEEEcCCC-------eE
Confidence 43 6788888653 21 2231 2 2357987642 211 122333333 45688887642 13
Q ss_pred EEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEccc
Q 011998 166 YMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 210 (473)
Q Consensus 166 ~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~ 210 (473)
+.-.-...+|+.+......| ......+.. .++++|+.|..
T Consensus 283 ~~S~d~G~tW~~~~~~~~~~--~~~~~~~~~---~~~~~~~~G~~ 322 (334)
T PRK13684 283 LVSKDGGKTWEKDPVGEEVP--SNFYKIVFL---DPEKGFVLGQR 322 (334)
T ss_pred EEeCCCCCCCeECCcCCCCC--cceEEEEEe---CCCceEEECCC
Confidence 33333456899876422222 122223333 36778887753
No 94
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=65.56 E-value=1.3e+02 Score=32.80 Aligned_cols=123 Identities=13% Similarity=0.186 Sum_probs=66.3
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCC--CC---CCceeeEEEEECCEEEEEeCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGN--PP---SARDSHTCSSWKNKIIVIGGEDG 106 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~--~P---~~R~~hs~~~~~~~IyV~GG~~~ 106 (473)
+-++.++.||+.... ..++.+|..|. .|+.-..... .+ ........++.+++||+.. .
T Consensus 64 tPvv~~g~vyv~s~~------------g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t-~-- 128 (527)
T TIGR03075 64 QPLVVDGVMYVTTSY------------SRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGT-L-- 128 (527)
T ss_pred CCEEECCEEEEECCC------------CcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEc-C--
Confidence 445678899986542 35888998875 5765332100 00 0011223455678887632 1
Q ss_pred CCCccceEEEEECCCCC--EEEeeCCCCCCCC-cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC--cEEEE
Q 011998 107 HDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKV 178 (473)
Q Consensus 107 ~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~-R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~~v 178 (473)
-..++.+|.+|.+ |+.-.. ..... ....+-++.+++||+-... ........++.||.+++ .|+.-
T Consensus 129 ----dg~l~ALDa~TGk~~W~~~~~--~~~~~~~~tssP~v~~g~Vivg~~~-~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 129 ----DARLVALDAKTGKVVWSKKNG--DYKAGYTITAAPLVVKGKVITGISG-GEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred ----CCEEEEEECCCCCEEeecccc--cccccccccCCcEEECCEEEEeecc-cccCCCcEEEEEECCCCceeEecc
Confidence 2468999998876 654321 11111 1122335667777664221 11123456899999886 47643
No 95
>PRK04043 tolB translocation protein TolB; Provisional
Probab=65.46 E-value=1.8e+02 Score=30.54 Aligned_cols=147 Identities=16% Similarity=0.163 Sum_probs=78.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
.++|++|+.+.+=+++... + .........-+ .+|++.-...+ ..++|++|..+..++++... +. ...
T Consensus 213 ~~Iyv~dl~tg~~~~lt~~---~-g~~~~~~~SPDG~~la~~~~~~g----~~~Iy~~dl~~g~~~~LT~~---~~-~d~ 280 (419)
T PRK04043 213 PTLYKYNLYTGKKEKIASS---Q-GMLVVSDVSKDGSKLLLTMAPKG----QPDIYLYDTNTKTLTQITNY---PG-IDV 280 (419)
T ss_pred CEEEEEECCCCcEEEEecC---C-CcEEeeEECCCCCEEEEEEccCC----CcEEEEEECCCCcEEEcccC---CC-ccC
Confidence 3899999998876666432 1 11111122224 45655443322 36899999999999888641 11 111
Q ss_pred eEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCC--c
Q 011998 140 HSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLE--A 216 (473)
Q Consensus 140 hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~--~ 216 (473)
.....- +.+|++.-... -..++|++|+.++..+++...+. +. . .+.+ .++.|++......... .
T Consensus 281 ~p~~SPDG~~I~F~Sdr~----g~~~Iy~~dl~~g~~~rlt~~g~-----~~-~--~~SP-DG~~Ia~~~~~~~~~~~~~ 347 (419)
T PRK04043 281 NGNFVEDDKRIVFVSDRL----GYPNIFMKKLNSGSVEQVVFHGK-----NN-S--SVST-YKNYIVYSSRETNNEFGKN 347 (419)
T ss_pred ccEECCCCCEEEEEECCC----CCceEEEEECCCCCeEeCccCCC-----cC-c--eECC-CCCEEEEEEcCCCcccCCC
Confidence 111222 34566554331 23579999999999888765322 11 1 1211 2344444433221111 2
Q ss_pred cCcEEEEEccccceee
Q 011998 217 LDDMYYLYTGLVNERK 232 (473)
Q Consensus 217 ~~dv~~ld~~~~~w~~ 232 (473)
..+++.++.....+..
T Consensus 348 ~~~I~v~d~~~g~~~~ 363 (419)
T PRK04043 348 TFNLYLISTNSDYIRR 363 (419)
T ss_pred CcEEEEEECCCCCeEE
Confidence 3588999987765543
No 96
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=65.17 E-value=2e+02 Score=30.84 Aligned_cols=110 Identities=19% Similarity=0.225 Sum_probs=54.8
Q ss_pred CcEEEEECCCC--eEEecccCC-CCCCcc-cceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEee
Q 011998 5 RDLHILDTSSH--TWISPSVRG-EGPEAR-EGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRAT 77 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~-~~P~~R-~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~ 77 (473)
..++.+|..+. .|+.-.... ....+. .....+..+ ++||+... ...++.+|..|. .|+.-.
T Consensus 71 g~l~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~g~~~~~~~~V~v~~~------------~g~v~AlD~~TG~~~W~~~~ 138 (488)
T cd00216 71 SALFALDAATGKVLWRYDPKLPADRGCCDVVNRGVAYWDPRKVFFGTF------------DGRLVALDAETGKQVWKFGN 138 (488)
T ss_pred CcEEEEECCCChhhceeCCCCCccccccccccCCcEEccCCeEEEecC------------CCeEEEEECCCCCEeeeecC
Confidence 46888998875 588642111 001110 111223445 77776433 146889998765 576532
Q ss_pred cCCCCCCCceeeEEEEECCEEEEEeCCCCCC---CccceEEEEECCCCC--EEEe
Q 011998 78 TSGNPPSARDSHTCSSWKNKIIVIGGEDGHD---YYLSDVHILDTDTLT--WKEL 127 (473)
Q Consensus 78 ~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~---~~~ndv~~yD~~t~~--W~~l 127 (473)
.....+......+.++.++.+|+ |..+... .....++.||..|.+ |+.-
T Consensus 139 ~~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~~~~~~g~v~alD~~TG~~~W~~~ 192 (488)
T cd00216 139 NDQVPPGYTMTGAPTIVKKLVII-GSSGAEFFACGVRGALRAYDVETGKLLWRFY 192 (488)
T ss_pred CCCcCcceEecCCCEEECCEEEE-eccccccccCCCCcEEEEEECCCCceeeEee
Confidence 21000000012233455666554 4332221 124678999998765 8653
No 97
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=64.50 E-value=1.7e+02 Score=29.70 Aligned_cols=148 Identities=18% Similarity=0.172 Sum_probs=71.5
Q ss_pred cCcEEEEECCCCe--EEecccC--CCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEEC--CCCeEEEe
Q 011998 4 LRDLHILDTSSHT--WISPSVR--GEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNT--ETFVWKRA 76 (473)
Q Consensus 4 l~dv~~yD~~t~~--W~~l~~~--~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~--~t~~W~~l 76 (473)
.+.|++|+..... ....... +..-.|| |.+..- +..+||..-. .+.|.+|+. .+..|+.+
T Consensus 165 ~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPR--h~~f~pdg~~~Yv~~e~-----------s~~v~v~~~~~~~g~~~~~ 231 (345)
T PF10282_consen 165 ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPR--HLAFSPDGKYAYVVNEL-----------SNTVSVFDYDPSDGSLTEI 231 (345)
T ss_dssp TTEEEEEEE-TTS-TEEEEEEEECSTTSSEE--EEEE-TTSSEEEEEETT-----------TTEEEEEEEETTTTEEEEE
T ss_pred CCEEEEEEEeCCCceEEEeeccccccCCCCc--EEEEcCCcCEEEEecCC-----------CCcEEEEeecccCCceeEE
Confidence 4567888887665 5432110 1112222 333222 3589999774 245555554 47777765
Q ss_pred ecCCCCCC---Cc-eeeEEEEE--CCEEEEEeCCCCCCCccceEEEEEC--CCCCEEEeeC---CCCCCCCcceeEEEE-
Q 011998 77 TTSGNPPS---AR-DSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNT---SGMVLSPRAGHSTVA- 144 (473)
Q Consensus 77 ~~~g~~P~---~R-~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~--~t~~W~~l~~---~g~~p~~R~~hs~~~- 144 (473)
......|. .. ..+.+... +..|||.-. -.+.+.+|++ .+.+.+.+.. .+. .||. ....
T Consensus 232 ~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr------~~~sI~vf~~d~~~g~l~~~~~~~~~G~--~Pr~--~~~s~ 301 (345)
T PF10282_consen 232 QTISTLPEGFTGENAPAEIAISPDGRFLYVSNR------GSNSISVFDLDPATGTLTLVQTVPTGGK--FPRH--FAFSP 301 (345)
T ss_dssp EEEESCETTSCSSSSEEEEEE-TTSSEEEEEEC------TTTEEEEEEECTTTTTEEEEEEEEESSS--SEEE--EEE-T
T ss_pred EEeeeccccccccCCceeEEEecCCCEEEEEec------cCCEEEEEEEecCCCceEEEEEEeCCCC--CccE--EEEeC
Confidence 53322222 12 23333333 456777532 2466777776 4556655543 111 1322 1111
Q ss_pred ECCEEEEEecccCCCCccccEEEE--eCCCCcEEEEee
Q 011998 145 FGKNLFVFGGFTDSQNLYDDLYMI--DVDSGLWTKVIT 180 (473)
Q Consensus 145 ~~~~LyV~GG~~~~~~~~ndv~~y--d~~t~~W~~v~~ 180 (473)
-++.|||.... .+.+.+| |.+++.++.+..
T Consensus 302 ~g~~l~Va~~~------s~~v~vf~~d~~tG~l~~~~~ 333 (345)
T PF10282_consen 302 DGRYLYVANQD------SNTVSVFDIDPDTGKLTPVGS 333 (345)
T ss_dssp TSSEEEEEETT------TTEEEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEecC------CCeEEEEEEeCCCCcEEEecc
Confidence 23446665433 2335555 667888888764
No 98
>PF12217 End_beta_propel: Catalytic beta propeller domain of bacteriophage endosialidase; InterPro: IPR024428 This entry represents the beta propeller domain of endosialidases, which consists of catalytically active part of the enzymes. This core domain forms stable SDS-resistant trimers. There is a nested beta barrel domain in this domain. This domain is typically between 443 and 460 amino acids in length [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=61.96 E-value=1.7e+02 Score=28.94 Aligned_cols=186 Identities=16% Similarity=0.209 Sum_probs=79.6
Q ss_pred CCCeEEecccCCCCCC-------cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEE--EE-----ECCCCeEEEeec
Q 011998 13 SSHTWISPSVRGEGPE-------AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLY--IL-----NTETFVWKRATT 78 (473)
Q Consensus 13 ~t~~W~~l~~~~~~P~-------~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~--~y-----d~~t~~W~~l~~ 78 (473)
..+.|+..+. +..|. .-.-|+.+.+++.-|.+|=-+.. ..-.++= .| .+....=+.++.
T Consensus 113 ~~spW~~teL-~~~~~~~~a~~~vTe~HSFa~i~~~~fA~GyHnGD------~sPRe~G~~yfs~~~~sp~~~vrr~i~s 185 (367)
T PF12217_consen 113 HDSPWRITEL-GTIASFTSAGVAVTELHSFATIDDNQFAVGYHNGD------VSPRELGFLYFSDAFASPGVFVRRIIPS 185 (367)
T ss_dssp TTS--EEEEE-ES-TT--------SEEEEEEE-SSS-EEEEEEE-S------SSS-EEEEEEETTTTT-TT--EEEE--G
T ss_pred ccCCceeeec-ccccccccccceeeeeeeeeEecCCceeEEeccCC------CCcceeeEEEecccccCCcceeeeechh
Confidence 4567886433 23332 34568889998877777643211 1112222 12 111112222221
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCC
Q 011998 79 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 158 (473)
Q Consensus 79 ~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~ 158 (473)
- ........+.-.+++.||+.--.......-+.+.+-+.....|..+... -.......-.+..++.||+||-....
T Consensus 186 e--y~~~AsEPCvkyY~g~LyLtTRgt~~~~~GS~L~rs~d~G~~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~ 261 (367)
T PF12217_consen 186 E--YERNASEPCVKYYDGVLYLTTRGTLPTNPGSSLHRSDDNGQNWSSLRFP--NNVHHTNLPFAKVGDVLYMFGSERAE 261 (367)
T ss_dssp G--G-TTEEEEEEEEETTEEEEEEEES-TTS---EEEEESSTTSS-EEEE-T--T---SS---EEEETTEEEEEEE-SST
T ss_pred h--hccccccchhhhhCCEEEEEEcCcCCCCCcceeeeecccCCchhhcccc--ccccccCCCceeeCCEEEEEeccccc
Confidence 1 1112233444466999998764443333557788888888999999851 11122223346789999999864221
Q ss_pred CC------------ccccE--EEE-----eCCCCcEEEEeeC---CCCCCCcceeeEEEeccccCCE-EEEEcccCC
Q 011998 159 QN------------LYDDL--YMI-----DVDSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGV-LVFIGGCNK 212 (473)
Q Consensus 159 ~~------------~~ndv--~~y-----d~~t~~W~~v~~~---g~~P~~R~~~~a~~~~~~~~~~-l~v~GG~~~ 212 (473)
++ ....+ .+. .++.-.|..+... |.......+..++|+ .++. .|+|||.+.
T Consensus 262 ~EWE~G~~D~RY~~~yPRtF~~k~nv~~W~~d~~ew~nitdqIYqG~ivNSavGVGSv~~---KD~~lyy~FGgED~ 335 (367)
T PF12217_consen 262 NEWEGGEPDNRYRANYPRTFMLKVNVSDWSLDDVEWVNITDQIYQGGIVNSAVGVGSVVV---KDGWLYYIFGGEDF 335 (367)
T ss_dssp T-SSTT-----SS-B--EEEEEEEETTT---TT---EEEEE-BB--SSS---SEEEEEEE---ETTEEEEEEEEB-S
T ss_pred cccccCCCcccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---ECCEEEEEecCccc
Confidence 10 01112 222 3445567777653 222333445555665 4665 467888653
No 99
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=56.32 E-value=1.1e+02 Score=33.26 Aligned_cols=120 Identities=18% Similarity=0.234 Sum_probs=64.1
Q ss_pred CCcccceEEEEEC--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEe
Q 011998 27 PEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIG 102 (473)
Q Consensus 27 P~~R~~hsa~~~~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~G 102 (473)
-.|++|..++... -.||+.|- -++||+||++.+.|-..-.. -.+ .--++.+ -..|+.+|
T Consensus 131 RIP~~GRDm~y~~~scDly~~gs------------g~evYRlNLEqGrfL~P~~~---~~~--~lN~v~in~~hgLla~G 193 (703)
T KOG2321|consen 131 RIPKFGRDMKYHKPSCDLYLVGS------------GSEVYRLNLEQGRFLNPFET---DSG--ELNVVSINEEHGLLACG 193 (703)
T ss_pred ecCcCCccccccCCCccEEEeec------------CcceEEEEcccccccccccc---ccc--cceeeeecCccceEEec
Confidence 4566777666653 45666654 26899999999999532211 111 1112223 35788999
Q ss_pred CCCCCCCccceEEEEECCCCCE-EEeeCCC---CCCCCcce--eEEEEECC-EEEEEecccCCCCccccEEEEeCCCCc
Q 011998 103 GEDGHDYYLSDVHILDTDTLTW-KELNTSG---MVLSPRAG--HSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 103 G~~~~~~~~ndv~~yD~~t~~W-~~l~~~g---~~p~~R~~--hs~~~~~~-~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
|.++. ++.+|+.+..- ..+.... ..|..-.. .++..+.+ -|-+.-|.. ...+++||+.+.+
T Consensus 194 t~~g~------VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts-----~G~v~iyDLRa~~ 261 (703)
T KOG2321|consen 194 TEDGV------VEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTS-----TGSVLIYDLRASK 261 (703)
T ss_pred ccCce------EEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEEeecc-----CCcEEEEEcccCC
Confidence 86543 56667655431 1121110 12222111 23444554 566655653 2348899987754
No 100
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=55.45 E-value=2.2e+02 Score=28.28 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=67.7
Q ss_pred CeEEEEECCCC-----eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCC
Q 011998 61 NDLYILNTETF-----VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVL 134 (473)
Q Consensus 61 ~dv~~yd~~t~-----~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p 134 (473)
..+++|+.... +++.+... ...-.-++++.++++|++.-| +.+++|+....+ |..... ..
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~---~~~g~V~ai~~~~~~lv~~~g--------~~l~v~~l~~~~~l~~~~~---~~ 127 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHST---EVKGPVTAICSFNGRLVVAVG--------NKLYVYDLDNSKTLLKKAF---YD 127 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEE---EESS-EEEEEEETTEEEEEET--------TEEEEEEEETTSSEEEEEE---E-
T ss_pred cEEEEEEEEcccccceEEEEEEEE---eecCcceEhhhhCCEEEEeec--------CEEEEEEccCcccchhhhe---ec
Confidence 56889988874 66655432 222235677777999777655 567888888777 877765 44
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 135 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 135 ~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
.+-...+...+++.|++ |-... .-.++.|+.+..+-..+... ..++...++..+
T Consensus 128 ~~~~i~sl~~~~~~I~v-gD~~~----sv~~~~~~~~~~~l~~va~d---~~~~~v~~~~~l 181 (321)
T PF03178_consen 128 SPFYITSLSVFKNYILV-GDAMK----SVSLLRYDEENNKLILVARD---YQPRWVTAAEFL 181 (321)
T ss_dssp BSSSEEEEEEETTEEEE-EESSS----SEEEEEEETTTE-EEEEEEE---SS-BEEEEEEEE
T ss_pred ceEEEEEEeccccEEEE-EEccc----CEEEEEEEccCCEEEEEEec---CCCccEEEEEEe
Confidence 44466666777786654 43211 12255667766666666653 345555555554
No 101
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=52.83 E-value=3.1e+02 Score=29.06 Aligned_cols=106 Identities=17% Similarity=0.171 Sum_probs=60.6
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
-++|.+|+.+.+-.++... ..+..+-...- +.+|+..-.+.+. .++|++|++..+=+++... .....
T Consensus 262 ~~iy~~dl~~~~~~~Lt~~----~gi~~~Ps~spdG~~ivf~Sdr~G~----p~I~~~~~~g~~~~riT~~----~~~~~ 329 (425)
T COG0823 262 PDIYLMDLDGKNLPRLTNG----FGINTSPSWSPDGSKIVFTSDRGGR----PQIYLYDLEGSQVTRLTFS----GGGNS 329 (425)
T ss_pred ccEEEEcCCCCcceecccC----CccccCccCCCCCCEEEEEeCCCCC----cceEEECCCCCceeEeecc----CCCCc
Confidence 5899999988874444332 22233333333 4455554333322 3899999999887777642 12222
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCc-EEEEeeC
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITT 181 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~-W~~v~~~ 181 (473)
+-...-+++.++|=+.. .+. .++..+|+.++. |+.+...
T Consensus 330 ~p~~SpdG~~i~~~~~~-~g~--~~i~~~~~~~~~~~~~lt~~ 369 (425)
T COG0823 330 NPVWSPDGDKIVFESSS-GGQ--WDIDKNDLASGGKIRILTST 369 (425)
T ss_pred CccCCCCCCEEEEEecc-CCc--eeeEEeccCCCCcEEEcccc
Confidence 33333345544444432 222 668889988776 8888764
No 102
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=51.93 E-value=2.1e+02 Score=27.00 Aligned_cols=133 Identities=14% Similarity=0.111 Sum_probs=65.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEE-EC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+.+||+.+++-...-. ....++ ++.. .+ ..+|+.++. .+.+++||..+.+....-..+
T Consensus 11 ~~v~~~d~~t~~~~~~~~--~~~~~~---~l~~~~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~-- 72 (300)
T TIGR03866 11 NTISVIDTATLEVTRTFP--VGQRPR---GITLSKDGKLLYVCASD-----------SDTIQVIDLATGEVIGTLPSG-- 72 (300)
T ss_pred CEEEEEECCCCceEEEEE--CCCCCC---ceEECCCCCEEEEEECC-----------CCeEEEEECCCCcEEEeccCC--
Confidence 468899988775443211 111122 2222 23 357777663 246889999887664422211
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQ 159 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~ 159 (473)
..+ ..++.. ++.+|+.++.+ +.+.+||+.+.+-...- +....-+.++.. ++.+++++...
T Consensus 73 ~~~---~~~~~~~~g~~l~~~~~~~------~~l~~~d~~~~~~~~~~-----~~~~~~~~~~~~~dg~~l~~~~~~--- 135 (300)
T TIGR03866 73 PDP---ELFALHPNGKILYIANEDD------NLVTVIDIETRKVLAEI-----PVGVEPEGMAVSPDGKIVVNTSET--- 135 (300)
T ss_pred CCc---cEEEECCCCCEEEEEcCCC------CeEEEEECCCCeEEeEe-----eCCCCcceEEECCCCCEEEEEecC---
Confidence 111 122222 34566655422 35888998875422111 111111233332 45566665432
Q ss_pred CccccEEEEeCCCCc
Q 011998 160 NLYDDLYMIDVDSGL 174 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~ 174 (473)
.+.++.||..+..
T Consensus 136 --~~~~~~~d~~~~~ 148 (300)
T TIGR03866 136 --TNMAHFIDTKTYE 148 (300)
T ss_pred --CCeEEEEeCCCCe
Confidence 1235667876653
No 103
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=50.54 E-value=3.7e+02 Score=29.29 Aligned_cols=109 Identities=17% Similarity=0.127 Sum_probs=57.5
Q ss_pred cCcEEEEECCCC--eEEecccCC-CC-C---CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEE
Q 011998 4 LRDLHILDTSSH--TWISPSVRG-EG-P---EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWK 74 (473)
Q Consensus 4 l~dv~~yD~~t~--~W~~l~~~~-~~-P---~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~ 74 (473)
.+.|+.+|..|. .|+.-.... .. + ........++.+++||+... ...++.+|.+|. .|+
T Consensus 78 ~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~~~rg~av~~~~v~v~t~------------dg~l~ALDa~TGk~~W~ 145 (527)
T TIGR03075 78 YSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDVVNRGVALYDGKVFFGTL------------DARLVALDAKTGKVVWS 145 (527)
T ss_pred CCcEEEEECCCCceeeEecCCCCcccccccccccccccceEECCEEEEEcC------------CCEEEEEECCCCCEEee
Confidence 356899998875 687532111 11 0 01112234556778776432 136899999877 476
Q ss_pred EeecCCCCCC-CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEe
Q 011998 75 RATTSGNPPS-ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 127 (473)
Q Consensus 75 ~l~~~g~~P~-~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l 127 (473)
.-.. .... .....+-++.+++||+-..... ...-..++.||.++.+ |+.-
T Consensus 146 ~~~~--~~~~~~~~tssP~v~~g~Vivg~~~~~-~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 146 KKNG--DYKAGYTITAAPLVVKGKVITGISGGE-FGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred cccc--cccccccccCCcEEECCEEEEeecccc-cCCCcEEEEEECCCCceeEecc
Confidence 4321 1111 1122233456888776432111 1134578899988875 6543
No 104
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=50.36 E-value=2.6e+02 Score=27.49 Aligned_cols=67 Identities=24% Similarity=0.323 Sum_probs=44.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
.|.|+..||- .-+|..|+++.+-++.--. -.-|-|+.+.- .+-=++-|+.++. +-++
T Consensus 126 enSi~~AgGD------------~~~y~~dlE~G~i~r~~rG----HtDYvH~vv~R~~~~qilsG~EDGt------vRvW 183 (325)
T KOG0649|consen 126 ENSILFAGGD------------GVIYQVDLEDGRIQREYRG----HTDYVHSVVGRNANGQILSGAEDGT------VRVW 183 (325)
T ss_pred CCcEEEecCC------------eEEEEEEecCCEEEEEEcC----CcceeeeeeecccCcceeecCCCcc------EEEE
Confidence 4889999983 3578899999988776432 22356666653 2334566776655 4678
Q ss_pred ECCCCCEEEe
Q 011998 118 DTDTLTWKEL 127 (473)
Q Consensus 118 D~~t~~W~~l 127 (473)
|++|.+-.++
T Consensus 184 d~kt~k~v~~ 193 (325)
T KOG0649|consen 184 DTKTQKHVSM 193 (325)
T ss_pred eccccceeEE
Confidence 8888876554
No 105
>PRK03629 tolB translocation protein TolB; Provisional
Probab=47.59 E-value=3.6e+02 Score=28.30 Aligned_cols=145 Identities=10% Similarity=0.084 Sum_probs=71.8
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+|++|+.+.+-+.+... +.. ...-...-++ +|++.....+ ..++|++|..+.+.+++... .. ...
T Consensus 223 ~~i~i~dl~~G~~~~l~~~---~~~-~~~~~~SPDG~~La~~~~~~g----~~~I~~~d~~tg~~~~lt~~---~~-~~~ 290 (429)
T PRK03629 223 SALVIQTLANGAVRQVASF---PRH-NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTDG---RS-NNT 290 (429)
T ss_pred cEEEEEECCCCCeEEccCC---CCC-cCCeEECCCCCEEEEEEcCCC----CcEEEEEECCCCCEEEccCC---CC-CcC
Confidence 4689999988876665432 111 1111112244 5555433222 24699999999888777531 11 111
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCc
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 219 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~d 219 (473)
.....-+++.++|..... -...+|.+|+.+..-+++...+. ... ...+. .+++.+++.+.... ..+
T Consensus 291 ~~~wSPDG~~I~f~s~~~---g~~~Iy~~d~~~g~~~~lt~~~~----~~~--~~~~S--pDG~~Ia~~~~~~g---~~~ 356 (429)
T PRK03629 291 EPTWFPDSQNLAYTSDQA---GRPQVYKVNINGGAPQRITWEGS----QNQ--DADVS--SDGKFMVMVSSNGG---QQH 356 (429)
T ss_pred ceEECCCCCEEEEEeCCC---CCceEEEEECCCCCeEEeecCCC----Ccc--CEEEC--CCCCEEEEEEccCC---Cce
Confidence 111222444333332211 12479999998887777754221 111 11121 24444444333221 246
Q ss_pred EEEEEcccccee
Q 011998 220 MYYLYTGLVNER 231 (473)
Q Consensus 220 v~~ld~~~~~w~ 231 (473)
++.++.....+.
T Consensus 357 I~~~dl~~g~~~ 368 (429)
T PRK03629 357 IAKQDLATGGVQ 368 (429)
T ss_pred EEEEECCCCCeE
Confidence 888887765543
No 106
>PF07734 FBA_1: F-box associated; InterPro: IPR006527 This domain occurs in a diverse superfamily of genes in plants. Most examples are found C-terminal to an F-box (IPR001810 from INTERPRO), a 60 amino acid motif involved in ubiquitination of target proteins to mark them for degradation. Two-hybid experiments support the idea that most members are interchangeable F-box subunits of SCF E3 complexes []. Some members have two copies of this domain.
Probab=47.06 E-value=2.1e+02 Score=25.52 Aligned_cols=91 Identities=13% Similarity=0.100 Sum_probs=48.8
Q ss_pred EEECCEEEEEecccCCCCccccEEEEeCCCCcE-EEEeeCCCCCCCcc-eeeEEEeccccCCEEEEEcccCCCCCccCcE
Q 011998 143 VAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW-TKVITTGEGPSARF-SVAGDCLDPLKGGVLVFIGGCNKSLEALDDM 220 (473)
Q Consensus 143 ~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W-~~v~~~g~~P~~R~-~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv 220 (473)
+.++|.+|=++-...... ..-|..||+.+.+. +.++. |.... ......+....+++|.++-- ......-++
T Consensus 2 V~vnG~~hW~~~~~~~~~-~~~IlsFDl~~E~F~~~~~l----P~~~~~~~~~~~L~~v~~~~L~~~~~--~~~~~~~~I 74 (164)
T PF07734_consen 2 VFVNGALHWLAYDENNDE-KDFILSFDLSTEKFGRSLPL----PFCNDDDDDSVSLSVVRGDCLCVLYQ--CDETSKIEI 74 (164)
T ss_pred EEECCEEEeeEEecCCCC-ceEEEEEeccccccCCEECC----CCccCccCCEEEEEEecCCEEEEEEe--ccCCccEEE
Confidence 456677665554422211 11599999999999 55543 22111 11112221123567776632 112234689
Q ss_pred EEEEc---cccceeeeeccchhh
Q 011998 221 YYLYT---GLVNERKLEKLSLRK 240 (473)
Q Consensus 221 ~~ld~---~~~~w~~~~~l~~~~ 240 (473)
|+.+. ....|.++..+++..
T Consensus 75 Wvm~~~~~~~~SWtK~~~i~~~~ 97 (164)
T PF07734_consen 75 WVMKKYGYGKESWTKLFTIDLPP 97 (164)
T ss_pred EEEeeeccCcceEEEEEEEecCC
Confidence 99883 366898887666443
No 107
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=47.06 E-value=3.7e+02 Score=28.71 Aligned_cols=194 Identities=15% Similarity=0.194 Sum_probs=0.0
Q ss_pred eeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEE
Q 011998 88 SHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLY 166 (473)
Q Consensus 88 ~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~ 166 (473)
+......+|+|+..|+..+. +-+||.++.. -+.+.. -..|-..---+..++.++++|+ ++.. +-
T Consensus 72 ~s~~fR~DG~LlaaGD~sG~------V~vfD~k~r~iLR~~~a---h~apv~~~~f~~~d~t~l~s~s--Dd~v----~k 136 (487)
T KOG0310|consen 72 YSVDFRSDGRLLAAGDESGH------VKVFDMKSRVILRQLYA---HQAPVHVTKFSPQDNTMLVSGS--DDKV----VK 136 (487)
T ss_pred eEEEeecCCeEEEccCCcCc------EEEeccccHHHHHHHhh---ccCceeEEEecccCCeEEEecC--CCce----EE
Q ss_pred EEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhhccccc
Q 011998 167 MIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKLKC 246 (473)
Q Consensus 167 ~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~ 246 (473)
.+|+.+..- +..-.+..---|++..... .++|++-||++.. +-.+|+.... ..+..++-....
T Consensus 137 ~~d~s~a~v-~~~l~~htDYVR~g~~~~~-----~~hivvtGsYDg~------vrl~DtR~~~-~~v~elnhg~pV---- 199 (487)
T KOG0310|consen 137 YWDLSTAYV-QAELSGHTDYVRCGDISPA-----NDHIVVTGSYDGK------VRLWDTRSLT-SRVVELNHGCPV---- 199 (487)
T ss_pred EEEcCCcEE-EEEecCCcceeEeeccccC-----CCeEEEecCCCce------EEEEEeccCC-ceeEEecCCCce----
Q ss_pred cccccccCCCcceEEEcceecccCCccEEEECCcccccccCCCCccceEeecccccCCCceEEEEecCcceeeeec-cCC
Q 011998 247 QEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVTESFPLGYTIETTIDGKPLRGILF-ANK 325 (473)
Q Consensus 247 ~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~~~~~~~~~~k~f~~~vs~i~~~~Y~i~~~i~G~~~~g~~f-~~~ 325 (473)
...++.-+++ +++.-| ++-.-+-+.+.|..+-+.+| -||
T Consensus 200 ---------e~vl~lpsgs--------~iasAg-----------------------Gn~vkVWDl~~G~qll~~~~~H~K 239 (487)
T KOG0310|consen 200 ---------ESVLALPSGS--------LIASAG-----------------------GNSVKVWDLTTGGQLLTSMFNHNK 239 (487)
T ss_pred ---------eeEEEcCCCC--------EEEEcC-----------------------CCeEEEEEecCCceehhhhhcccc
Q ss_pred CCcccccccccccccccccccceeecCCcCCccccchh
Q 011998 326 PTSASTTNHNSSRKRAVGEIGGAMLNGDCNSNSKAFKA 363 (473)
Q Consensus 326 ~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 363 (473)
.++.... .+-|+-+|-|..+++.|++.+
T Consensus 240 tVTcL~l----------~s~~~rLlS~sLD~~VKVfd~ 267 (487)
T KOG0310|consen 240 TVTCLRL----------ASDSTRLLSGSLDRHVKVFDT 267 (487)
T ss_pred eEEEEEe----------ecCCceEeecccccceEEEEc
No 108
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=46.95 E-value=3.2e+02 Score=27.54 Aligned_cols=136 Identities=16% Similarity=0.203 Sum_probs=60.9
Q ss_pred CCCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEE
Q 011998 13 SSHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 91 (473)
Q Consensus 13 ~t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~ 91 (473)
....|+.++ .|....-..+..++ ++-|++|-.+ .+++=+-.-.+|+.+......+.....++.
T Consensus 4 ~~~~W~~v~----l~t~~~l~dV~F~d~~~G~~VG~~g------------~il~T~DGG~tW~~~~~~~~~~~~~~l~~I 67 (302)
T PF14870_consen 4 SGNSWQQVS----LPTDKPLLDVAFVDPNHGWAVGAYG------------TILKTTDGGKTWQPVSLDLDNPFDYHLNSI 67 (302)
T ss_dssp SS--EEEEE-----S-SS-EEEEEESSSS-EEEEETTT------------EEEEESSTTSS-EE-----S-----EEEEE
T ss_pred cCCCcEEee----cCCCCceEEEEEecCCEEEEEecCC------------EEEEECCCCccccccccCCCccceeeEEEE
Confidence 457899884 34444455555554 6888887631 222222234589987643211211223333
Q ss_pred EEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCCccccEEEEeC
Q 011998 92 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDV 170 (473)
Q Consensus 92 ~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~~~ndv~~yd~ 170 (473)
...++..|++|-. .-++.-.=.-..|++++.. .+.|...+.... -++.++++|.. ..+|+-.-
T Consensus 68 ~f~~~~g~ivG~~-------g~ll~T~DgG~tW~~v~l~--~~lpgs~~~i~~l~~~~~~l~~~~-------G~iy~T~D 131 (302)
T PF14870_consen 68 SFDGNEGWIVGEP-------GLLLHTTDGGKTWERVPLS--SKLPGSPFGITALGDGSAELAGDR-------GAIYRTTD 131 (302)
T ss_dssp EEETTEEEEEEET-------TEEEEESSTTSS-EE------TT-SS-EEEEEEEETTEEEEEETT---------EEEESS
T ss_pred EecCCceEEEcCC-------ceEEEecCCCCCcEEeecC--CCCCCCeeEEEEcCCCcEEEEcCC-------CcEEEeCC
Confidence 4457889988742 1123322346789998742 233333344433 45567776643 23555555
Q ss_pred CCCcEEEEee
Q 011998 171 DSGLWTKVIT 180 (473)
Q Consensus 171 ~t~~W~~v~~ 180 (473)
.-.+|+.+..
T Consensus 132 gG~tW~~~~~ 141 (302)
T PF14870_consen 132 GGKTWQAVVS 141 (302)
T ss_dssp TTSSEEEEE-
T ss_pred CCCCeeEccc
Confidence 5678998875
No 109
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=46.86 E-value=2.5e+02 Score=26.34 Aligned_cols=70 Identities=19% Similarity=0.096 Sum_probs=44.2
Q ss_pred eeeCeEEEEECCCCeEEEeecCCC--CCCCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 58 VYYNDLYILNTETFVWKRATTSGN--PPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 58 ~~~~dv~~yd~~t~~W~~l~~~g~--~P~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
.-..++|++|..++.|..+..... --.|. ......+ ..++++|-..+.-.--..+|+|++.++.-..+-.
T Consensus 85 EgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 85 EGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred ccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 346789999999998877754311 12333 2222224 4556666544443234679999999999888865
No 110
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=46.57 E-value=2.9e+02 Score=26.97 Aligned_cols=130 Identities=15% Similarity=0.076 Sum_probs=66.8
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEE---EeeCCCC---CCCCcceeE---EEEECCEEEEEe
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK---ELNTSGM---VLSPRAGHS---TVAFGKNLFVFG 153 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~---~l~~~g~---~p~~R~~hs---~~~~~~~LyV~G 153 (473)
|.+-.+-+.+++++.+|.--. ..+.+-+||+.++.-. .++..+. .|....+++ .++-++.|+|+=
T Consensus 66 p~~~~GtG~vVYngslYY~~~------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~GLWvIY 139 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENGLWVIY 139 (250)
T ss_pred eceeccCCeEEECCcEEEEec------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCCEEEEE
Confidence 555556666777877776422 4688999999998755 3332111 112222222 233345588775
Q ss_pred cccCCCCccccEEEEeCCCC----cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 154 GFTDSQNLYDDLYMIDVDSG----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~----~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
...++.. .--+-++|+.+. +|..- .+.+..+. ++++ -|.||++-..+... ..=.+.||+.+.+
T Consensus 140 at~~~~g-~ivvskld~~tL~v~~tw~T~-----~~k~~~~n-aFmv----CGvLY~~~s~~~~~--~~I~yafDt~t~~ 206 (250)
T PF02191_consen 140 ATEDNNG-NIVVSKLDPETLSVEQTWNTS-----YPKRSAGN-AFMV----CGVLYATDSYDTRD--TEIFYAFDTYTGK 206 (250)
T ss_pred ecCCCCC-cEEEEeeCcccCceEEEEEec-----cCchhhcc-eeeE----eeEEEEEEECCCCC--cEEEEEEECCCCc
Confidence 5533221 122455566553 45431 22222222 2322 47788776554332 2224678887665
Q ss_pred ee
Q 011998 230 ER 231 (473)
Q Consensus 230 w~ 231 (473)
..
T Consensus 207 ~~ 208 (250)
T PF02191_consen 207 EE 208 (250)
T ss_pred ee
Confidence 43
No 111
>PRK13684 Ycf48-like protein; Provisional
Probab=46.23 E-value=3.3e+02 Score=27.56 Aligned_cols=121 Identities=12% Similarity=0.094 Sum_probs=57.9
Q ss_pred EEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeE
Q 011998 63 LYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHS 141 (473)
Q Consensus 63 v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs 141 (473)
+++=+-.-.+|+++......|. .......+ ++.+|+.|.. ..+++-+-.-.+|+.+.. +..-..+.
T Consensus 111 i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~~~~~~~~~~g~~-------G~i~~S~DgG~tW~~~~~----~~~g~~~~ 177 (334)
T PRK13684 111 LLHTTDGGKNWTRIPLSEKLPG--SPYLITALGPGTAEMATNV-------GAIYRTTDGGKNWEALVE----DAAGVVRN 177 (334)
T ss_pred EEEECCCCCCCeEccCCcCCCC--CceEEEEECCCcceeeecc-------ceEEEECCCCCCceeCcC----CCcceEEE
Confidence 4443333458998853211122 22223333 3456665532 234444445678998864 22334445
Q ss_pred EEEECCEEEEEecccCCCCccccEEEE-eCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcc
Q 011998 142 TVAFGKNLFVFGGFTDSQNLYDDLYMI-DVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 142 ~~~~~~~LyV~GG~~~~~~~~ndv~~y-d~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
+....+..++..|.. + .++.. |....+|+.+.. +..+...+.... .++.++++|.
T Consensus 178 i~~~~~g~~v~~g~~--G----~i~~s~~~gg~tW~~~~~----~~~~~l~~i~~~---~~g~~~~vg~ 233 (334)
T PRK13684 178 LRRSPDGKYVAVSSR--G----NFYSTWEPGQTAWTPHQR----NSSRRLQSMGFQ---PDGNLWMLAR 233 (334)
T ss_pred EEECCCCeEEEEeCC--c----eEEEEcCCCCCeEEEeeC----CCcccceeeeEc---CCCCEEEEec
Confidence 554444444443321 1 13332 334457998864 222333333332 3677888764
No 112
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=43.18 E-value=2.8e+02 Score=27.86 Aligned_cols=99 Identities=10% Similarity=0.142 Sum_probs=56.2
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
-+-+.|+.+..=+.++. |.+....+-.+. .+++++. ..-...+++||+.+..|.+.+. |....
T Consensus 211 aiaridp~~~~aev~p~----P~~~~~gsRriwsdpig~~wit------twg~g~l~rfdPs~~sW~eypL----Pgs~a 276 (353)
T COG4257 211 AIARIDPFAGHAEVVPQ----PNALKAGSRRIWSDPIGRAWIT------TWGTGSLHRFDPSVTSWIEYPL----PGSKA 276 (353)
T ss_pred ceEEcccccCCcceecC----CCcccccccccccCccCcEEEe------ccCCceeeEeCcccccceeeeC----CCCCC
Confidence 35556776665444432 222111111111 4567765 1134678999999999999984 43222
Q ss_pred eeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 139 GHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 139 ~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
..-...+ .+++++. .-..+.+.+||+++.+.+.+..
T Consensus 277 rpys~rVD~~grVW~s------ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 277 RPYSMRVDRHGRVWLS------EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred CcceeeeccCCcEEee------ccccCceeecCcccceEEEecC
Confidence 2222333 3456652 1234569999999999887754
No 113
>PF15525 DUF4652: Domain of unknown function (DUF4652)
Probab=42.14 E-value=1.9e+02 Score=27.12 Aligned_cols=76 Identities=14% Similarity=0.196 Sum_probs=44.9
Q ss_pred CCCCCCccceEEEEECCCCCEEEeeCCCC--CCCCcceeEEEEECCE-EEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 104 EDGHDYYLSDVHILDTDTLTWKELNTSGM--VLSPRAGHSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 104 ~~~~~~~~ndv~~yD~~t~~W~~l~~~g~--~p~~R~~hs~~~~~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
.+....-..++|++|+.++.|..+..... --.|. ...-.-+.. ++++|.....-.--..+|+|++.++.=+.+..
T Consensus 80 ~~a~eEgiGkIYIkn~~~~~~~~L~i~~~~~k~sPK--~i~WiDD~~L~vIIG~a~GTvS~GGnLy~~nl~tg~~~~ly~ 157 (200)
T PF15525_consen 80 PEAEEEGIGKIYIKNLNNNNWWSLQIDQNEEKYSPK--YIEWIDDNNLAVIIGYAHGTVSKGGNLYKYNLNTGNLTELYE 157 (200)
T ss_pred CccccccceeEEEEecCCCceEEEEecCcccccCCc--eeEEecCCcEEEEEccccceEccCCeEEEEEccCCceeEeee
Confidence 33444568899999999999987754211 12233 222233445 45555321111223569999999998887766
Q ss_pred C
Q 011998 181 T 181 (473)
Q Consensus 181 ~ 181 (473)
.
T Consensus 158 ~ 158 (200)
T PF15525_consen 158 W 158 (200)
T ss_pred c
Confidence 4
No 114
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=40.67 E-value=4.5e+02 Score=27.54 Aligned_cols=160 Identities=14% Similarity=0.107 Sum_probs=75.4
Q ss_pred CCeEEecccCCCCCCcccceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC-CCCCCc-----
Q 011998 14 SHTWISPSVRGEGPEAREGHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NPPSAR----- 86 (473)
Q Consensus 14 t~~W~~l~~~~~~P~~R~~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~P~~R----- 86 (473)
..+|+.+......|.. .+....++ +.+++.|.. ..+++-+-.-.+|+.+.... ..|..+
T Consensus 165 G~tW~~~~~~~~~p~~--~~~i~~~~~~~~~ivg~~------------G~v~~S~D~G~tW~~~~~~t~~~~l~~~~~s~ 230 (398)
T PLN00033 165 GETWERIPLSPKLPGE--PVLIKATGPKSAEMVTDE------------GAIYVTSNAGRNWKAAVEETVSATLNRTVSSG 230 (398)
T ss_pred CCCceECccccCCCCC--ceEEEEECCCceEEEecc------------ceEEEECCCCCCceEccccccccccccccccc
Confidence 3689877543222322 33444454 567777753 13555555567898762210 111111
Q ss_pred ---------eeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCC-CEEEeeCCCCCCCCcceeEEEE-ECCEEEEEec
Q 011998 87 ---------DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGG 154 (473)
Q Consensus 87 ---------~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~-~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG 154 (473)
..+.+... ++.++++|-.. .+++-+-... .|+.+.. +.++...++.. .++.+++.|.
T Consensus 231 ~~g~~~y~Gsf~~v~~~~dG~~~~vg~~G-------~~~~s~d~G~~~W~~~~~----~~~~~l~~v~~~~dg~l~l~g~ 299 (398)
T PLN00033 231 ISGASYYTGTFSTVNRSPDGDYVAVSSRG-------NFYLTWEPGQPYWQPHNR----ASARRIQNMGWRADGGLWLLTR 299 (398)
T ss_pred ccccceeccceeeEEEcCCCCEEEEECCc-------cEEEecCCCCcceEEecC----CCccceeeeeEcCCCCEEEEeC
Confidence 11111222 44555555321 2333222333 3888874 44444444433 4566888765
Q ss_pred ccCCCCccccEEEEeCCCCcE-----EEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC
Q 011998 155 FTDSQNLYDDLYMIDVDSGLW-----TKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 155 ~~~~~~~~ndv~~yd~~t~~W-----~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
.. .++.-+-....| ..+.. +..++....+.. ..++.+++.|...
T Consensus 300 ~G-------~l~~S~d~G~~~~~~~f~~~~~----~~~~~~l~~v~~--~~d~~~~a~G~~G 348 (398)
T PLN00033 300 GG-------GLYVSKGTGLTEEDFDFEEADI----KSRGFGILDVGY--RSKKEAWAAGGSG 348 (398)
T ss_pred Cc-------eEEEecCCCCcccccceeeccc----CCCCcceEEEEE--cCCCcEEEEECCC
Confidence 41 133333333444 44332 223333343333 2477888888643
No 115
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=40.20 E-value=4.5e+02 Score=27.37 Aligned_cols=99 Identities=13% Similarity=0.146 Sum_probs=54.6
Q ss_pred CCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC--CCCCCCCc--ceeEEEEE
Q 011998 70 TFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--SGMVLSPR--AGHSTVAF 145 (473)
Q Consensus 70 t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~--~g~~p~~R--~~hs~~~~ 145 (473)
.+.|+.+.. ..-..--++.++|++|++. ...+++.++.+- +-.++.+ .+.+...+ .....+..
T Consensus 189 ~~~Wt~l~~-----~~~~~~DIi~~kGkfYAvD-------~~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~yLVEs 255 (373)
T PLN03215 189 GNVLKALKQ-----MGYHFSDIIVHKGQTYALD-------SIGIVYWINSDL-EFSRFGTSLDENITDGCWTGDRRFVEC 255 (373)
T ss_pred CCeeeEccC-----CCceeeEEEEECCEEEEEc-------CCCeEEEEecCC-ceeeecceecccccCCcccCceeEEEE
Confidence 489999853 1223455677899999982 234567776431 1122221 01111111 11224455
Q ss_pred CCEEEEEecccCCC-------------CccccEEEEeCCCCcEEEEeeC
Q 011998 146 GKNLFVFGGFTDSQ-------------NLYDDLYMIDVDSGLWTKVITT 181 (473)
Q Consensus 146 ~~~LyV~GG~~~~~-------------~~~ndv~~yd~~t~~W~~v~~~ 181 (473)
.+.|+++..+.... ...-.++..|.+..+|.++...
T Consensus 256 ~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~sL 304 (373)
T PLN03215 256 CGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKTL 304 (373)
T ss_pred CCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEeccc
Confidence 67888887752211 1123466778888999998874
No 116
>PF02191 OLF: Olfactomedin-like domain; InterPro: IPR003112 The olfactomedin-domain was first identified in olfactomedin, an extracellular matrix protein of the olfactory neuroepithelium []. Members of this extracellular domain-family have since been shown to be present in several metazoan proteins, such as latrophilins, myocilins, optimedins and noelins, the latter being involved in the generation of neural crest cells. Myocilin is of considerable interest, as mutations in its olfactomedin-domain can lead to glaucoma []. The olfactomedin-domains in myocilin and optimedin are essential for the interaction between these two proteins [].; GO: 0005515 protein binding
Probab=38.72 E-value=3.8e+02 Score=26.12 Aligned_cols=162 Identities=15% Similarity=0.107 Sum_probs=81.5
Q ss_pred CCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE---EeecCCC---CCCCceeeE---EEEECCE
Q 011998 27 PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK---RATTSGN---PPSARDSHT---CSSWKNK 97 (473)
Q Consensus 27 P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~---~l~~~g~---~P~~R~~hs---~~~~~~~ 97 (473)
|-+-.|...++.++.+|..=. -.+.+.+||+.++.-. .++..+- .|....+++ .++..+-
T Consensus 66 p~~~~GtG~vVYngslYY~~~-----------~s~~IvkydL~t~~v~~~~~L~~A~~~n~~~y~~~~~t~iD~AvDE~G 134 (250)
T PF02191_consen 66 PYPWQGTGHVVYNGSLYYNKY-----------NSRNIVKYDLTTRSVVARRELPGAGYNNRFPYYWSGYTDIDFAVDENG 134 (250)
T ss_pred eceeccCCeEEECCcEEEEec-----------CCceEEEEECcCCcEEEEEECCccccccccceecCCCceEEEEEcCCC
Confidence 333344445556666665533 2478999999988644 3322111 122222222 2333566
Q ss_pred EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 98 IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 98 IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
|+|+=...... -.--+-.+|+.+..-.+.-.. ..+.+..+. +.++-|.||+........ ..-.+.||+.+++=..
T Consensus 135 LWvIYat~~~~-g~ivvskld~~tL~v~~tw~T-~~~k~~~~n-aFmvCGvLY~~~s~~~~~--~~I~yafDt~t~~~~~ 209 (250)
T PF02191_consen 135 LWVIYATEDNN-GNIVVSKLDPETLSVEQTWNT-SYPKRSAGN-AFMVCGVLYATDSYDTRD--TEIFYAFDTYTGKEED 209 (250)
T ss_pred EEEEEecCCCC-CcEEEEeeCcccCceEEEEEe-ccCchhhcc-eeeEeeEEEEEEECCCCC--cEEEEEEECCCCceec
Confidence 77775543322 012234456655443222111 133333333 445557788887764322 3447899999886555
Q ss_pred EeeCCCCCCCcceeeEEEeccccCCEEEEE
Q 011998 178 VITTGEGPSARFSVAGDCLDPLKGGVLVFI 207 (473)
Q Consensus 178 v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~ 207 (473)
+.. ..+.+-..+++.-.++ .+.+||++
T Consensus 210 ~~i--~f~~~~~~~~~l~YNP-~dk~LY~w 236 (250)
T PF02191_consen 210 VSI--PFPNPYGNISMLSYNP-RDKKLYAW 236 (250)
T ss_pred eee--eeccccCceEeeeECC-CCCeEEEE
Confidence 443 2233333444444443 26778876
No 117
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=37.80 E-value=5.4e+02 Score=27.54 Aligned_cols=67 Identities=21% Similarity=0.238 Sum_probs=33.3
Q ss_pred CcEEEEECCCC--eEEecccCCCC-CCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGEG-PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~-P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
..|+.+|..|. .|+.-.. +.. +......+.++.++.+|+ |....... .......++.||..|. .|+.
T Consensus 120 g~v~AlD~~TG~~~W~~~~~-~~~~~~~~i~ssP~v~~~~v~v-g~~~~~~~--~~~~~g~v~alD~~TG~~~W~~ 191 (488)
T cd00216 120 GRLVALDAETGKQVWKFGNN-DQVPPGYTMTGAPTIVKKLVII-GSSGAEFF--ACGVRGALRAYDVETGKLLWRF 191 (488)
T ss_pred CeEEEEECCCCCEeeeecCC-CCcCcceEecCCCEEECCEEEE-eccccccc--cCCCCcEEEEEECCCCceeeEe
Confidence 45788898865 5875421 110 111122334455666665 43211000 0012357899999876 5864
No 118
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=37.67 E-value=4.9e+02 Score=27.09 Aligned_cols=98 Identities=11% Similarity=0.112 Sum_probs=53.6
Q ss_pred CCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC--CCCCCCc--eee
Q 011998 14 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS--GNPPSAR--DSH 89 (473)
Q Consensus 14 t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~--g~~P~~R--~~h 89 (473)
.+.|+.++ . . .-..--++..+|++|++.- ..+++.++.+- .-.++.+. +.+...+ ...
T Consensus 189 ~~~Wt~l~---~-~-~~~~~DIi~~kGkfYAvD~------------~G~l~~i~~~l-~i~~v~~~i~~~~~~g~~~~~~ 250 (373)
T PLN03215 189 GNVLKALK---Q-M-GYHFSDIIVHKGQTYALDS------------IGIVYWINSDL-EFSRFGTSLDENITDGCWTGDR 250 (373)
T ss_pred CCeeeEcc---C-C-CceeeEEEEECCEEEEEcC------------CCeEEEEecCC-ceeeecceecccccCCcccCce
Confidence 47899884 2 2 2234467788999999833 12466666331 11222110 0111011 123
Q ss_pred EEEEECCEEEEEeCCCCCC-------------CccceEEEEECCCCCEEEeeC
Q 011998 90 TCSSWKNKIIVIGGEDGHD-------------YYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 90 s~~~~~~~IyV~GG~~~~~-------------~~~ndv~~yD~~t~~W~~l~~ 129 (473)
-.+...+.+|++....... ..-=.+|.+|.+..+|.++..
T Consensus 251 yLVEs~GdLLmV~R~~~~~~~~~~~~~~~~~~t~~f~VfklD~~~~~WveV~s 303 (373)
T PLN03215 251 RFVECCGELYIVERLPKESTWKRKADGFEYSRTVGFKVYKFDDELAKWMEVKT 303 (373)
T ss_pred eEEEECCEEEEEEEEccCcccccccccccccceeEEEEEEEcCCCCcEEEecc
Confidence 3455678898888752211 011246777988999999986
No 119
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=34.82 E-value=4.6e+02 Score=25.90 Aligned_cols=187 Identities=8% Similarity=-0.001 Sum_probs=0.0
Q ss_pred CcEEEEECCC-CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECC-CCeEEEeecCCCC
Q 011998 5 RDLHILDTSS-HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t-~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~ 82 (473)
+.+.+||..+ .+++.+... .....-..-+....++.||+.+. ....+..|++. +.+++.+...
T Consensus 12 ~~I~~~~~~~~g~l~~~~~~-~~~~~~~~l~~spd~~~lyv~~~-----------~~~~i~~~~~~~~g~l~~~~~~--- 76 (330)
T PRK11028 12 QQIHVWNLNHEGALTLLQVV-DVPGQVQPMVISPDKRHLYVGVR-----------PEFRVLSYRIADDGALTFAAES--- 76 (330)
T ss_pred CCEEEEEECCCCceeeeeEE-ecCCCCccEEECCCCCEEEEEEC-----------CCCcEEEEEECCCCceEEeeee---
Q ss_pred CCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCC--CEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCC
Q 011998 83 PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS 158 (473)
Q Consensus 83 P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~--~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~ 158 (473)
+.+-.-+.++.. +++.++...+.. +.+.+|++.++ ....+.. .+....-|.++.. +++.++......+
T Consensus 77 ~~~~~p~~i~~~~~g~~l~v~~~~~-----~~v~v~~~~~~g~~~~~~~~---~~~~~~~~~~~~~p~g~~l~v~~~~~~ 148 (330)
T PRK11028 77 PLPGSPTHISTDHQGRFLFSASYNA-----NCVSVSPLDKDGIPVAPIQI---IEGLEGCHSANIDPDNRTLWVPCLKED 148 (330)
T ss_pred cCCCCceEEEECCCCCEEEEEEcCC-----CeEEEEEECCCCCCCCceee---ccCCCcccEeEeCCCCCEEEEeeCCCC
Q ss_pred CCccccEEEEeCCC-CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 159 QNLYDDLYMIDVDS-GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 159 ~~~~ndv~~yd~~t-~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
. +++||+.+ +................+...+.+.+. +..+|+. ....+.+..|+..
T Consensus 149 ~-----v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pd-g~~lyv~------~~~~~~v~v~~~~ 205 (330)
T PRK11028 149 R-----IRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPN-QQYAYCV------NELNSSVDVWQLK 205 (330)
T ss_pred E-----EEEEEECCCCcccccCCCceecCCCCCCceEEECCC-CCEEEEE------ecCCCEEEEEEEe
No 120
>PF09826 Beta_propel: Beta propeller domain; InterPro: IPR019198 This entry consists of predicted secreted proteins containing a C-terminal beta-propeller domain distantly related to WD-40 repeats.
Probab=34.02 E-value=6.5e+02 Score=27.41 Aligned_cols=139 Identities=15% Similarity=0.089 Sum_probs=83.0
Q ss_pred eeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCC-----CCCCccceEEEEECCCCCEEEeeCCCCC
Q 011998 59 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGED-----GHDYYLSDVHILDTDTLTWKELNTSGMV 133 (473)
Q Consensus 59 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~-----~~~~~~ndv~~yD~~t~~W~~l~~~g~~ 133 (473)
....+++|++...+.+-.....-+-.-...++|-.+++.+-|+--.. ......|.++++|..-+.--++.. +
T Consensus 246 ~~T~I~kf~~~~~~~~y~~sg~V~G~llnqFsmdE~~G~LRvaTT~~~~~~~~~~~s~N~lyVLD~~L~~vG~l~~---l 322 (521)
T PF09826_consen 246 ESTTIYKFALDGGKIEYVGSGSVPGYLLNQFSMDEYDGYLRVATTSGNWWWDSEDTSSNNLYVLDEDLKIVGSLEG---L 322 (521)
T ss_pred CceEEEEEEccCCcEEEEEEEEECcEEcccccEeccCCEEEEEEecCcccccCCCCceEEEEEECCCCcEeEEccc---c
Confidence 45678888888777664332211122356677778888776665432 233467899999854444444442 4
Q ss_pred CCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEccc
Q 011998 134 LSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 210 (473)
Q Consensus 134 p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~ 210 (473)
-..=.-+++-.++++.|+.-=. ..+-+++.|+++-+ .....|.+..|.++--.+- +.+++|+=||=-
T Consensus 323 a~gE~IysvRF~Gd~~Y~VTFr-----qvDPLfviDLsdP~--~P~vlGeLKIPGfS~YLHP---~~e~~LlGiG~~ 389 (521)
T PF09826_consen 323 APGERIYSVRFMGDRAYLVTFR-----QVDPLFVIDLSDPA--NPKVLGELKIPGFSDYLHP---YDENHLLGIGKD 389 (521)
T ss_pred CCCceEEEEEEeCCeEEEEEEe-----ecCceEEEECCCCC--CCceeeEEECccchhceeE---CCCCeEEEEccc
Confidence 3444556777788888876322 23458999987752 2233345555666544443 457888877743
No 121
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=33.85 E-value=3.6e+02 Score=24.37 Aligned_cols=103 Identities=12% Similarity=0.048 Sum_probs=48.3
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
+..+++|+. ...+++||..+......-.. . ...-.++... ++.+++.|+.+ ..+.+||
T Consensus 63 ~~~l~~~~~-----------~~~i~i~~~~~~~~~~~~~~---~-~~~i~~~~~~~~~~~~~~~~~~------~~i~~~~ 121 (289)
T cd00200 63 GTYLASGSS-----------DKTIRLWDLETGECVRTLTG---H-TSYVSSVAFSPDGRILSSSSRD------KTIKVWD 121 (289)
T ss_pred CCEEEEEcC-----------CCeEEEEEcCcccceEEEec---c-CCcEEEEEEcCCCCEEEEecCC------CeEEEEE
Confidence 446666663 24688888877532221111 0 1111222222 34666666632 4578898
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEEC-CEEEEEecccCCCCccccEEEEeCCCC
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~~-~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+.+.+-...-. .....-.++.... +.+++.|.. ...+..||+.+.
T Consensus 122 ~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~ 167 (289)
T cd00200 122 VETGKCLTTLR----GHTDWVNSVAFSPDGTFVASSSQ------DGTIKLWDLRTG 167 (289)
T ss_pred CCCcEEEEEec----cCCCcEEEEEEcCcCCEEEEEcC------CCcEEEEEcccc
Confidence 87544322211 1111122233333 344444432 134888888754
No 122
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=33.73 E-value=6.1e+02 Score=27.02 Aligned_cols=59 Identities=17% Similarity=0.317 Sum_probs=33.5
Q ss_pred ceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEE--EE--CCEEEEEeCCCCC
Q 011998 32 GHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS--SW--KNKIIVIGGEDGH 107 (473)
Q Consensus 32 ~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~--~~--~~~IyV~GG~~~~ 107 (473)
-|+.+..+.-.|++||. ...++|+|-+.++.--.+ - .+.+.+.+ .+ ++..++-||.++.
T Consensus 84 v~al~s~n~G~~l~ag~----------i~g~lYlWelssG~LL~v------~-~aHYQ~ITcL~fs~dgs~iiTgskDg~ 146 (476)
T KOG0646|consen 84 VHALASSNLGYFLLAGT----------ISGNLYLWELSSGILLNV------L-SAHYQSITCLKFSDDGSHIITGSKDGA 146 (476)
T ss_pred eeeeecCCCceEEEeec----------ccCcEEEEEeccccHHHH------H-HhhccceeEEEEeCCCcEEEecCCCcc
Confidence 45566666667788773 134688888777643221 1 11222222 22 6788888887654
No 123
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.70 E-value=1.2e+02 Score=30.37 Aligned_cols=60 Identities=13% Similarity=0.184 Sum_probs=41.1
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
.+++||+.+..|.+-+..+.. +|-...-+--.+++++. +.-.+.+.+||+++.+.+.++.
T Consensus 255 ~l~rfdPs~~sW~eypLPgs~--arpys~rVD~~grVW~s------ea~agai~rfdpeta~ftv~p~ 314 (353)
T COG4257 255 SLHRFDPSVTSWIEYPLPGSK--ARPYSMRVDRHGRVWLS------EADAGAIGRFDPETARFTVLPI 314 (353)
T ss_pred eeeEeCcccccceeeeCCCCC--CCcceeeeccCCcEEee------ccccCceeecCcccceEEEecC
Confidence 589999999999987654432 33333323335677763 2245779999999999988863
No 124
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=32.02 E-value=4e+02 Score=29.34 Aligned_cols=74 Identities=11% Similarity=0.015 Sum_probs=42.6
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
.|+++..++.. .-.||+.| .-+++|++|++.+.|-..-. .-.+--.+..+.--..|+.+||..
T Consensus 132 IP~~GRDm~y~~~scDly~~g-------sg~evYRlNLEqGrfL~P~~---~~~~~lN~v~in~~hgLla~Gt~~----- 196 (703)
T KOG2321|consen 132 IPKFGRDMKYHKPSCDLYLVG-------SGSEVYRLNLEQGRFLNPFE---TDSGELNVVSINEEHGLLACGTED----- 196 (703)
T ss_pred cCcCCccccccCCCccEEEee-------cCcceEEEEccccccccccc---cccccceeeeecCccceEEecccC-----
Confidence 45666666654 34566654 24789999999999843211 111112222222224588898863
Q ss_pred cccEEEEeCCCC
Q 011998 162 YDDLYMIDVDSG 173 (473)
Q Consensus 162 ~ndv~~yd~~t~ 173 (473)
+.++.+|+...
T Consensus 197 -g~VEfwDpR~k 207 (703)
T KOG2321|consen 197 -GVVEFWDPRDK 207 (703)
T ss_pred -ceEEEecchhh
Confidence 23778887764
No 125
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=31.53 E-value=4.5e+02 Score=24.74 Aligned_cols=136 Identities=18% Similarity=0.166 Sum_probs=63.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+.+||..+.+....-. ....+ ..++.. + +.+|+.++. ...+++||+.+.+-......+
T Consensus 53 ~~v~~~d~~~~~~~~~~~--~~~~~---~~~~~~~~g~~l~~~~~~-----------~~~l~~~d~~~~~~~~~~~~~-- 114 (300)
T TIGR03866 53 DTIQVIDLATGEVIGTLP--SGPDP---ELFALHPNGKILYIANED-----------DNLVTVIDIETRKVLAEIPVG-- 114 (300)
T ss_pred CeEEEEECCCCcEEEecc--CCCCc---cEEEECCCCCEEEEEcCC-----------CCeEEEEECCCCeEEeEeeCC--
Confidence 457788888776654211 11111 122222 3 456666542 136888999876422111111
Q ss_pred CCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 83 PSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 83 P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
..-++++. -++.+++++..+. +.++.||..+.+-......+ .+..+.....+++.+++++..+
T Consensus 115 ---~~~~~~~~~~dg~~l~~~~~~~-----~~~~~~d~~~~~~~~~~~~~----~~~~~~~~s~dg~~l~~~~~~~---- 178 (300)
T TIGR03866 115 ---VEPEGMAVSPDGKIVVNTSETT-----NMAHFIDTKTYEIVDNVLVD----QRPRFAEFTADGKELWVSSEIG---- 178 (300)
T ss_pred ---CCcceEEECCCCCEEEEEecCC-----CeEEEEeCCCCeEEEEEEcC----CCccEEEECCCCCEEEEEcCCC----
Confidence 11122332 2566777665432 23566787765432211111 1112222233444444443211
Q ss_pred cccEEEEeCCCCcE
Q 011998 162 YDDLYMIDVDSGLW 175 (473)
Q Consensus 162 ~ndv~~yd~~t~~W 175 (473)
+.+..||+++.+.
T Consensus 179 -~~v~i~d~~~~~~ 191 (300)
T TIGR03866 179 -GTVSVIDVATRKV 191 (300)
T ss_pred -CEEEEEEcCccee
Confidence 3488899987653
No 126
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=31.39 E-value=6.3e+02 Score=26.46 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=46.6
Q ss_pred CeEEecccCCCCCCcc--cceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEE
Q 011998 15 HTWISPSVRGEGPEAR--EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS 92 (473)
Q Consensus 15 ~~W~~l~~~~~~P~~R--~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~ 92 (473)
.+|++..........+ ...++...++..|++|-. .-+++=.-.-.+|+++......|.. .+...
T Consensus 120 ~tW~~~~~~~~~~~~~~~~l~~v~f~~~~g~~vG~~------------G~il~T~DgG~tW~~~~~~~~~p~~--~~~i~ 185 (398)
T PLN00033 120 KTWVPRSIPSAEDEDFNYRFNSISFKGKEGWIIGKP------------AILLHTSDGGETWERIPLSPKLPGE--PVLIK 185 (398)
T ss_pred CCceECccCcccccccccceeeeEEECCEEEEEcCc------------eEEEEEcCCCCCceECccccCCCCC--ceEEE
Confidence 5898763211111111 124455567788887542 1233333345789988653222322 23333
Q ss_pred EE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEe
Q 011998 93 SW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL 127 (473)
Q Consensus 93 ~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l 127 (473)
.+ ++.++++|.. ..+++-+-....|+.+
T Consensus 186 ~~~~~~~~ivg~~-------G~v~~S~D~G~tW~~~ 214 (398)
T PLN00033 186 ATGPKSAEMVTDE-------GAIYVTSNAGRNWKAA 214 (398)
T ss_pred EECCCceEEEecc-------ceEEEECCCCCCceEc
Confidence 34 4567777732 2244444455689887
No 127
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=30.76 E-value=5.7e+02 Score=25.73 Aligned_cols=156 Identities=14% Similarity=0.144 Sum_probs=65.7
Q ss_pred CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE
Q 011998 15 HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW 94 (473)
Q Consensus 15 ~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~ 94 (473)
.+|+......+.+.....+++...++..|+.|-. .-+++-.-.-.+|++++... +.|-..+....+
T Consensus 47 ~tW~~~~~~~~~~~~~~l~~I~f~~~~g~ivG~~------------g~ll~T~DgG~tW~~v~l~~--~lpgs~~~i~~l 112 (302)
T PF14870_consen 47 KTWQPVSLDLDNPFDYHLNSISFDGNEGWIVGEP------------GLLLHTTDGGKTWERVPLSS--KLPGSPFGITAL 112 (302)
T ss_dssp SS-EE-----S-----EEEEEEEETTEEEEEEET------------TEEEEESSTTSS-EE----T--T-SS-EEEEEEE
T ss_pred ccccccccCCCccceeeEEEEEecCCceEEEcCC------------ceEEEecCCCCCcEEeecCC--CCCCCeeEEEEc
Confidence 4788775322222112223445567889988752 12343344567999986432 233344444444
Q ss_pred -CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCC
Q 011998 95 -KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 95 -~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t 172 (473)
++.++++|.. ..+|+=.=.-..|+.+.. ............ ++++++.+.. +.+ +...|+-.
T Consensus 113 ~~~~~~l~~~~-------G~iy~T~DgG~tW~~~~~----~~~gs~~~~~r~~dG~~vavs~~---G~~---~~s~~~G~ 175 (302)
T PF14870_consen 113 GDGSAELAGDR-------GAIYRTTDGGKTWQAVVS----ETSGSINDITRSSDGRYVAVSSR---GNF---YSSWDPGQ 175 (302)
T ss_dssp ETTEEEEEETT---------EEEESSTTSSEEEEE-----S----EEEEEE-TTS-EEEEETT---SSE---EEEE-TT-
T ss_pred CCCcEEEEcCC-------CcEEEeCCCCCCeeEccc----CCcceeEeEEECCCCcEEEEECc---ccE---EEEecCCC
Confidence 6677777643 334444445678998864 112222223333 4555555543 111 33556777
Q ss_pred CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEc
Q 011998 173 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 173 ~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~G 208 (473)
..|+..... ..|.-.++... .++.|++..
T Consensus 176 ~~w~~~~r~----~~~riq~~gf~---~~~~lw~~~ 204 (302)
T PF14870_consen 176 TTWQPHNRN----SSRRIQSMGFS---PDGNLWMLA 204 (302)
T ss_dssp SS-EEEE------SSS-EEEEEE----TTS-EEEEE
T ss_pred ccceEEccC----ccceehhceec---CCCCEEEEe
Confidence 789988762 33433333332 357777754
No 128
>PRK10115 protease 2; Provisional
Probab=29.34 E-value=8.7e+02 Score=27.40 Aligned_cols=148 Identities=11% Similarity=0.107 Sum_probs=0.0
Q ss_pred CcEEEEE--CCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECC-CCeEEEeecCCC
Q 011998 5 RDLHILD--TSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD--~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~ 81 (473)
+.++.|+ ..+..|..+ -.............++.+|+. ++.......+...++. ...|+.+.+.
T Consensus 247 ~~~~l~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~ly~~--------tn~~~~~~~l~~~~~~~~~~~~~l~~~-- 312 (686)
T PRK10115 247 SEVLLLDAELADAEPFVF----LPRRKDHEYSLDHYQHRFYLR--------SNRHGKNFGLYRTRVRDEQQWEELIPP-- 312 (686)
T ss_pred ccEEEEECcCCCCCceEE----EECCCCCEEEEEeCCCEEEEE--------EcCCCCCceEEEecCCCcccCeEEECC--
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-----CCEEEEEeccc
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-----GKNLFVFGGFT 156 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-----~~~LyV~GG~~ 156 (473)
-..+.--.....++.|++..=.++. ..++++|..+.....+. ++.+......... +.-++.+.+.
T Consensus 313 -~~~~~i~~~~~~~~~l~~~~~~~g~----~~l~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~~~~~~~~~~ss~- 382 (686)
T PRK10115 313 -RENIMLEGFTLFTDWLVVEERQRGL----TSLRQINRKTREVIGIA----FDDPAYVTWIAYNPEPETSRLRYGYSSM- 382 (686)
T ss_pred -CCCCEEEEEEEECCEEEEEEEeCCE----EEEEEEcCCCCceEEec----CCCCceEeeecccCCCCCceEEEEEecC-
Q ss_pred CCCCccccEEEEeCCCCcEEEEe
Q 011998 157 DSQNLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t~~W~~v~ 179 (473)
..-.++|.||+.+.+|+.+.
T Consensus 383 ---~~P~~~y~~d~~~~~~~~l~ 402 (686)
T PRK10115 383 ---TTPDTLFELDMDTGERRVLK 402 (686)
T ss_pred ---CCCCEEEEEECCCCcEEEEE
No 129
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=28.41 E-value=6.2e+02 Score=25.46 Aligned_cols=126 Identities=17% Similarity=0.215 Sum_probs=61.6
Q ss_pred ceEEEEEC--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCe--EEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCC
Q 011998 32 GHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDG 106 (473)
Q Consensus 32 ~hsa~~~~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~ 106 (473)
-|.+.... +.+|+.-= + .+.+++|+..... .........++..-=.|....- +..+||..-
T Consensus 146 ~H~v~~~pdg~~v~v~dl-G----------~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e--- 211 (345)
T PF10282_consen 146 PHQVVFSPDGRFVYVPDL-G----------ADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNE--- 211 (345)
T ss_dssp EEEEEE-TTSSEEEEEET-T----------TTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEET---
T ss_pred ceeEEECCCCCEEEEEec-C----------CCEEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecC---
Confidence 45555553 46776521 1 3568888876655 5443221111111123444333 468899864
Q ss_pred CCCccceEEEEECC--CCCEEEeeCCCCCCC---Cc-ceeEEEEE--CCEEEEEecccCCCCccccEEEEeC--CCCcEE
Q 011998 107 HDYYLSDVHILDTD--TLTWKELNTSGMVLS---PR-AGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDV--DSGLWT 176 (473)
Q Consensus 107 ~~~~~ndv~~yD~~--t~~W~~l~~~g~~p~---~R-~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~--~t~~W~ 176 (473)
..+.+.+|+.. +..|+.+.....+|. .. ..+..++. +..||+.-.. .+.|.+|++ .++..+
T Consensus 212 ---~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~------~~sI~vf~~d~~~g~l~ 282 (345)
T PF10282_consen 212 ---LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRG------SNSISVFDLDPATGTLT 282 (345)
T ss_dssp ---TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECT------TTEEEEEEECTTTTTEE
T ss_pred ---CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEecc------CCEEEEEEEecCCCceE
Confidence 34555555544 667766554222332 12 22333333 3457775332 456788877 445666
Q ss_pred EEee
Q 011998 177 KVIT 180 (473)
Q Consensus 177 ~v~~ 180 (473)
.+..
T Consensus 283 ~~~~ 286 (345)
T PF10282_consen 283 LVQT 286 (345)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 5544
No 130
>PTZ00421 coronin; Provisional
Probab=27.80 E-value=8e+02 Score=26.48 Aligned_cols=113 Identities=12% Similarity=0.124 Sum_probs=52.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE-EeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++.+++.|+.+ ..+.+||+.+.+-. .+... ...+..-.....++..++..|.+.. .-..+.+|
T Consensus 179 dG~lLatgs~D-----------g~IrIwD~rsg~~v~tl~~H---~~~~~~~~~w~~~~~~ivt~G~s~s--~Dr~VklW 242 (493)
T PTZ00421 179 DGSLLCTTSKD-----------KKLNIIDPRDGTIVSSVEAH---ASAKSQRCLWAKRKDLIITLGCSKS--QQRQIMLW 242 (493)
T ss_pred CCCEEEEecCC-----------CEEEEEECCCCcEEEEEecC---CCCcceEEEEcCCCCeEEEEecCCC--CCCeEEEE
Confidence 46677777742 35788998876421 11111 1111111111123334444454322 12568888
Q ss_pred ECCCCCE--EEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 118 DTDTLTW--KELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 118 D~~t~~W--~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
|+.+... .... .. ......+..+ ++.+++.||..+ ..+.+||+.++....
T Consensus 243 Dlr~~~~p~~~~~----~d-~~~~~~~~~~d~d~~~L~lggkgD-----g~Iriwdl~~~~~~~ 296 (493)
T PTZ00421 243 DTRKMASPYSTVD----LD-QSSALFIPFFDEDTNLLYIGSKGE-----GNIRCFELMNERLTF 296 (493)
T ss_pred eCCCCCCceeEec----cC-CCCceEEEEEcCCCCEEEEEEeCC-----CeEEEEEeeCCceEE
Confidence 8765431 1111 00 0111222233 345666676532 238888887776543
No 131
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=26.41 E-value=3.4e+02 Score=28.75 Aligned_cols=106 Identities=16% Similarity=0.115 Sum_probs=59.2
Q ss_pred cCcEEEEECCCCeEEecccCCCCCCcccceEEEEECC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
-.++|.+|..+.+-.++. ..+ ....+-.-.-++ +|+..-.. .-..++|++|++...=+++...+
T Consensus 261 ~~~iy~~dl~~~~~~~Lt---~~~-gi~~~Ps~spdG~~ivf~Sdr---------~G~p~I~~~~~~g~~~~riT~~~-- 325 (425)
T COG0823 261 SPDIYLMDLDGKNLPRLT---NGF-GINTSPSWSPDGSKIVFTSDR---------GGRPQIYLYDLEGSQVTRLTFSG-- 325 (425)
T ss_pred CccEEEEcCCCCcceecc---cCC-ccccCccCCCCCCEEEEEeCC---------CCCcceEEECCCCCceeEeeccC--
Confidence 357999999987744442 212 223333333344 44444221 11238999999988777776542
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeC
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNT 129 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~ 129 (473)
....+-...-+++.++|=+..+.. -++..+|+.+.. |+.+..
T Consensus 326 --~~~~~p~~SpdG~~i~~~~~~~g~---~~i~~~~~~~~~~~~~lt~ 368 (425)
T COG0823 326 --GGNSNPVWSPDGDKIVFESSSGGQ---WDIDKNDLASGGKIRILTS 368 (425)
T ss_pred --CCCcCccCCCCCCEEEEEeccCCc---eeeEEeccCCCCcEEEccc
Confidence 122233333355545544433221 678889888777 888865
No 132
>PRK01742 tolB translocation protein TolB; Provisional
Probab=26.05 E-value=7.6e+02 Score=25.70 Aligned_cols=103 Identities=11% Similarity=0.103 Sum_probs=49.9
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeC-CCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGG-EDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG-~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+|++|+.+..-+.+... +. ........-+++.++++. .++. -++|.+|+.+...+.+... . ....
T Consensus 228 ~~i~i~dl~tg~~~~l~~~---~g-~~~~~~wSPDG~~La~~~~~~g~----~~Iy~~d~~~~~~~~lt~~---~-~~~~ 295 (429)
T PRK01742 228 SQLVVHDLRSGARKVVASF---RG-HNGAPAFSPDGSRLAFASSKDGV----LNIYVMGANGGTPSQLTSG---A-GNNT 295 (429)
T ss_pred cEEEEEeCCCCceEEEecC---CC-ccCceeECCCCCEEEEEEecCCc----EEEEEEECCCCCeEeeccC---C-CCcC
Confidence 4689999988776665432 11 111111122554444433 3222 4699999988887766431 1 1111
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
.....-+++.++|...... ...+|.++.....-+.+
T Consensus 296 ~~~wSpDG~~i~f~s~~~g---~~~I~~~~~~~~~~~~l 331 (429)
T PRK01742 296 EPSWSPDGQSILFTSDRSG---SPQVYRMSASGGGASLV 331 (429)
T ss_pred CEEECCCCCEEEEEECCCC---CceEEEEECCCCCeEEe
Confidence 1122224443333321111 23678888766543333
No 133
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=25.96 E-value=1.5e+02 Score=19.53 Aligned_cols=26 Identities=35% Similarity=0.600 Sum_probs=15.8
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCC
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET 70 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t 70 (473)
.+.++.++.||+.+.- ..++++|.+|
T Consensus 15 ~~~~v~~g~vyv~~~d------------g~l~ald~~t 40 (40)
T PF13570_consen 15 SSPAVAGGRVYVGTGD------------GNLYALDAAT 40 (40)
T ss_dssp S--EECTSEEEEE-TT------------SEEEEEETT-
T ss_pred cCCEEECCEEEEEcCC------------CEEEEEeCCC
Confidence 3446667888887662 4688888764
No 134
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=25.14 E-value=7.4e+02 Score=25.23 Aligned_cols=58 Identities=21% Similarity=0.324 Sum_probs=33.9
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCC--CCCcceeEEEEECCEEEEE
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMV--LSPRAGHSTVAFGKNLFVF 152 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~--p~~R~~hs~~~~~~~LyV~ 152 (473)
-+.+-++||...+....|.+.+||-.... -.++.-..+. ..-|..+-++++.++|||+
T Consensus 58 ~N~laLVGGg~~pky~pNkviIWDD~k~~~i~el~f~~~I~~V~l~r~riVvvl~~~I~Vy 118 (346)
T KOG2111|consen 58 SNYLALVGGGSRPKYPPNKVIIWDDLKERCIIELSFNSEIKAVKLRRDRIVVVLENKIYVY 118 (346)
T ss_pred hceEEEecCCCCCCCCCceEEEEecccCcEEEEEEeccceeeEEEcCCeEEEEecCeEEEE
Confidence 47788888888777789999999843332 2222221111 1123445566666666665
No 135
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=24.99 E-value=5.1e+02 Score=23.31 Aligned_cols=93 Identities=10% Similarity=0.049 Sum_probs=42.6
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEEC-CEEEEEeCCCCCCCccceEEEEECCCCCE-EEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSWK-NKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W-~~l~~~g~~p~~R~ 138 (473)
..+.+||+.+..-...-.. ....-.++.... +.+++.|+.+ ..+.+||..+.+- ..+.. ....
T Consensus 115 ~~i~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~~~~l~~~~~~------~~i~i~d~~~~~~~~~~~~-----~~~~ 179 (289)
T cd00200 115 KTIKVWDVETGKCLTTLRG----HTDWVNSVAFSPDGTFVASSSQD------GTIKLWDLRTGKCVATLTG-----HTGE 179 (289)
T ss_pred CeEEEEECCCcEEEEEecc----CCCcEEEEEEcCcCCEEEEEcCC------CcEEEEEccccccceeEec-----Cccc
Confidence 4688899886543322110 111112222223 4555554422 3578888864432 11211 1111
Q ss_pred eeEEEEEC-CEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 139 GHSTVAFG-KNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 139 ~hs~~~~~-~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
-.++.... ++.+++++. ...+.+||+.+..
T Consensus 180 i~~~~~~~~~~~l~~~~~------~~~i~i~d~~~~~ 210 (289)
T cd00200 180 VNSVAFSPDGEKLLSSSS------DGTIKLWDLSTGK 210 (289)
T ss_pred cceEEECCCcCEEEEecC------CCcEEEEECCCCc
Confidence 12223333 335555554 2358889987643
No 136
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=24.39 E-value=7.4e+02 Score=24.93 Aligned_cols=100 Identities=11% Similarity=0.009 Sum_probs=51.5
Q ss_pred eEEEEECCCC-eEEEeecC-CCCCCCceeeEEEEECCEEEEEeCC-----CCCCCccceEEEEECCCCCEEEeeCCCCCC
Q 011998 62 DLYILNTETF-VWKRATTS-GNPPSARDSHTCSSWKNKIIVIGGE-----DGHDYYLSDVHILDTDTLTWKELNTSGMVL 134 (473)
Q Consensus 62 dv~~yd~~t~-~W~~l~~~-g~~P~~R~~hs~~~~~~~IyV~GG~-----~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p 134 (473)
.++++++++. .|+.+... ...+.-|..-..+.-++.+|+---. .........+|+||+ .....++... .
T Consensus 86 g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~---~ 161 (307)
T COG3386 86 GVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDD---D 161 (307)
T ss_pred ccEEEeccCCceeEEeccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecC---c
Confidence 4566776544 33555433 2334566666666666776663322 122234567999998 4555665431 1
Q ss_pred CCcceeEEEEECC-EEEEEecccCCCCccccEEEEeCC
Q 011998 135 SPRAGHSTVAFGK-NLFVFGGFTDSQNLYDDLYMIDVD 171 (473)
Q Consensus 135 ~~R~~hs~~~~~~-~LyV~GG~~~~~~~~ndv~~yd~~ 171 (473)
....+--+..-++ .+|+. ....+.+++|+..
T Consensus 162 ~~~~NGla~SpDg~tly~a------DT~~~~i~r~~~d 193 (307)
T COG3386 162 LTIPNGLAFSPDGKTLYVA------DTPANRIHRYDLD 193 (307)
T ss_pred EEecCceEECCCCCEEEEE------eCCCCeEEEEecC
Confidence 1222222233344 46654 1234668888765
No 137
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=24.03 E-value=1.1e+03 Score=26.99 Aligned_cols=32 Identities=25% Similarity=0.376 Sum_probs=21.8
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEe
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRA 76 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l 76 (473)
.+-+++++.||+.... +.++.+|..|. .|+.-
T Consensus 188 ~TPlvvgg~lYv~t~~------------~~V~ALDa~TGk~lW~~d 221 (764)
T TIGR03074 188 ATPLKVGDTLYLCTPH------------NKVIALDAATGKEKWKFD 221 (764)
T ss_pred cCCEEECCEEEEECCC------------CeEEEEECCCCcEEEEEc
Confidence 4456779999998652 45778887765 47643
No 138
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=23.92 E-value=1.1e+03 Score=26.57 Aligned_cols=127 Identities=19% Similarity=0.145 Sum_probs=71.0
Q ss_pred CCCCcccceEEEE---ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC-CCCceeeEEE-EECCEEE
Q 011998 25 EGPEAREGHSAAL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP-PSARDSHTCS-SWKNKII 99 (473)
Q Consensus 25 ~~P~~R~~hsa~~---~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~-P~~R~~hs~~-~~~~~Iy 99 (473)
.+|..+-..+... .++++++.- . ...++..++.++.+.+++...... -.+-.++-.+ ..++.|-
T Consensus 423 ~~~~~~~~a~~i~ftid~~k~~~~s-~----------~~~~le~~el~~ps~kel~~~~~~~~~~~I~~l~~SsdG~yia 491 (691)
T KOG2048|consen 423 DVPLALLDASAISFTIDKNKLFLVS-K----------NIFSLEEFELETPSFKELKSIQSQAKCPSISRLVVSSDGNYIA 491 (691)
T ss_pred cchhhhccceeeEEEecCceEEEEe-c----------ccceeEEEEecCcchhhhhccccccCCCcceeEEEcCCCCEEE
Confidence 4566654444432 256777765 1 134677788877777666433111 1222222222 3377888
Q ss_pred EEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE---CCEEEEEecccCCCCccccEEEEeCCC---C
Q 011998 100 VIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDS---G 173 (473)
Q Consensus 100 V~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t---~ 173 (473)
+.++ ...+++||+++.+-..+.+ .++ ++.-++... .++|.|. ...|.++.||++. .
T Consensus 492 a~~t-------~g~I~v~nl~~~~~~~l~~--rln--~~vTa~~~~~~~~~~lvva-------ts~nQv~efdi~~~~l~ 553 (691)
T KOG2048|consen 492 AIST-------RGQIFVYNLETLESHLLKV--RLN--IDVTAAAFSPFVRNRLVVA-------TSNNQVFEFDIEARNLT 553 (691)
T ss_pred EEec-------cceEEEEEcccceeecchh--ccC--cceeeeeccccccCcEEEE-------ecCCeEEEEecchhhhh
Confidence 8764 4678999999998777764 122 333233222 3456554 2345689999854 3
Q ss_pred cEEEEee
Q 011998 174 LWTKVIT 180 (473)
Q Consensus 174 ~W~~v~~ 180 (473)
+|....+
T Consensus 554 ~ws~~nt 560 (691)
T KOG2048|consen 554 RWSKNNT 560 (691)
T ss_pred hhhhccc
Confidence 5766554
No 139
>COG4880 Secreted protein containing C-terminal beta-propeller domain distantly related to WD-40 repeats [General function prediction only]
Probab=23.89 E-value=9.1e+02 Score=25.81 Aligned_cols=57 Identities=21% Similarity=0.296 Sum_probs=39.6
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 71 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~ 71 (473)
.+.|++|++|-.-+---+++ |-.|..|-. ++-.+++.+|++-=. -++-+++.|+++-
T Consensus 403 e~~N~vYilDe~lnvvGklt--Gl~~gERIY-AvRf~gdv~yiVTfr----------qtDPlfviDlsNP 459 (603)
T COG4880 403 EPVNAVYILDENLNVVGKLT--GLAPGERIY-AVRFVGDVLYIVTFR----------QTDPLFVIDLSNP 459 (603)
T ss_pred CccceeEEEcCCCcEEEEEe--ccCCCceEE-EEEEeCceEEEEEEe----------ccCceEEEEcCCC
Confidence 35789999998888777775 555666654 455678888887442 2456788887654
No 140
>PF09910 DUF2139: Uncharacterized protein conserved in archaea (DUF2139); InterPro: IPR016675 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=23.11 E-value=8e+02 Score=24.89 Aligned_cols=129 Identities=19% Similarity=0.218 Sum_probs=71.3
Q ss_pred CCcCcEEEEECCCCe----EEecccCCCCCCcccceEE---EE---ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC
Q 011998 2 NPLRDLHILDTSSHT----WISPSVRGEGPEAREGHSA---AL---VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 71 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~----W~~l~~~~~~P~~R~~hsa---~~---~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~ 71 (473)
+-.+.++.||..+++ |..- ..-++....= .. +++.|++.-+- ....--+|..|..+.
T Consensus 75 NKYSHVH~yd~e~~~VrLLWkes-----ih~~~~WaGEVSdIlYdP~~D~LLlAR~D--------Gh~nLGvy~ldr~~g 141 (339)
T PF09910_consen 75 NKYSHVHEYDTENDSVRLLWKES-----IHDKTKWAGEVSDILYDPYEDRLLLARAD--------GHANLGVYSLDRRTG 141 (339)
T ss_pred eccceEEEEEcCCCeEEEEEecc-----cCCccccccchhheeeCCCcCEEEEEecC--------CcceeeeEEEcccCC
Confidence 446789999998875 5432 1112222111 11 14788887552 223346899999999
Q ss_pred eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCE--EEeeCC----CCCCCCcceeEEEEE
Q 011998 72 VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTS----GMVLSPRAGHSTVAF 145 (473)
Q Consensus 72 ~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W--~~l~~~----g~~p~~R~~hs~~~~ 145 (473)
.-+++... |.+ -.+...+..+| |...-..-.+.+.+||+.+++| +..+.. +.....|..-.++..
T Consensus 142 ~~~~L~~~---ps~---KG~~~~D~a~F---~i~~~~~g~~~i~~~Dli~~~~~~e~f~~~~s~Dg~~~~~~~~G~~~s~ 212 (339)
T PF09910_consen 142 KAEKLSSN---PSL---KGTLVHDYACF---GINNFHKGVSGIHCLDLISGKWVIESFDVSLSVDGGPVIRPELGAMASA 212 (339)
T ss_pred ceeeccCC---CCc---CceEeeeeEEE---eccccccCCceEEEEEccCCeEEEEecccccCCCCCceEeeccccEEEE
Confidence 88888654 433 22223333333 2222222478899999999999 444331 222223334445555
Q ss_pred CCEEEEE
Q 011998 146 GKNLFVF 152 (473)
Q Consensus 146 ~~~LyV~ 152 (473)
.+++|.|
T Consensus 213 ynR~faF 219 (339)
T PF09910_consen 213 YNRLFAF 219 (339)
T ss_pred eeeEEEE
Confidence 6665544
No 141
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=22.03 E-value=7.6e+02 Score=24.24 Aligned_cols=90 Identities=17% Similarity=0.298 Sum_probs=59.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeE----EEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHT----CSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVL 134 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs----~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p 134 (473)
..+++||..|.+-.+. -.+|. ++.+ ...+++-|+++ ..+-+||...+..+.+.. +-
T Consensus 81 k~v~vwDV~TGkv~Rr---------~rgH~aqVNtV~fNeesSVv~SgsfD------~s~r~wDCRS~s~ePiQi---ld 142 (307)
T KOG0316|consen 81 KAVQVWDVNTGKVDRR---------FRGHLAQVNTVRFNEESSVVASGSFD------SSVRLWDCRSRSFEPIQI---LD 142 (307)
T ss_pred ceEEEEEcccCeeeee---------cccccceeeEEEecCcceEEEecccc------ceeEEEEcccCCCCccch---hh
Confidence 4688999998754322 11232 2334 34567776654 446788999888888776 66
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 135 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 135 ~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
..+-+-+.+.+.+..+|.|-. + ..+..||+..++
T Consensus 143 ea~D~V~Si~v~~heIvaGS~-D-----GtvRtydiR~G~ 176 (307)
T KOG0316|consen 143 EAKDGVSSIDVAEHEIVAGSV-D-----GTVRTYDIRKGT 176 (307)
T ss_pred hhcCceeEEEecccEEEeecc-C-----CcEEEEEeecce
Confidence 778888888888887776654 2 237788887664
Done!