Query 011998
Match_columns 473
No_of_seqs 321 out of 2335
Neff 7.5
Searched_HMMs 29240
Date Mon Mar 25 19:35:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011998.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011998hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ii7_A Kelch-like protein 7; p 100.0 8.2E-35 2.8E-39 288.1 32.4 233 4-282 23-258 (306)
2 2xn4_A Kelch-like protein 2; s 100.0 1.7E-34 5.7E-39 285.4 32.7 209 3-235 28-237 (302)
3 1zgk_A Kelch-like ECH-associat 100.0 2.2E-34 7.4E-39 286.1 31.5 238 2-282 36-273 (308)
4 4asc_A Kelch repeat and BTB do 100.0 1E-34 3.5E-39 289.1 26.4 240 5-282 13-254 (315)
5 2vpj_A Kelch-like protein 12; 100.0 9.4E-34 3.2E-38 279.6 32.4 233 3-282 29-264 (301)
6 2woz_A Kelch repeat and BTB do 100.0 8.3E-34 2.8E-38 282.9 28.3 239 6-282 25-264 (318)
7 4asc_A Kelch repeat and BTB do 100.0 1.6E-33 5.5E-38 280.5 26.1 210 4-233 66-283 (315)
8 3ii7_A Kelch-like protein 7; p 100.0 3.2E-33 1.1E-37 276.6 26.9 212 2-236 67-281 (306)
9 1zgk_A Kelch-like ECH-associat 100.0 5.9E-33 2E-37 275.8 27.9 209 3-236 88-296 (308)
10 2xn4_A Kelch-like protein 2; s 100.0 6.8E-33 2.3E-37 273.8 27.9 208 3-234 75-283 (302)
11 2woz_A Kelch repeat and BTB do 100.0 3.8E-33 1.3E-37 278.2 26.3 208 5-233 78-293 (318)
12 2uvk_A YJHT; unknown function, 100.0 1.2E-32 4E-37 278.5 27.7 244 5-284 31-329 (357)
13 2vpj_A Kelch-like protein 12; 100.0 2.7E-32 9.2E-37 269.1 28.7 210 2-236 75-287 (301)
14 2zwa_A Leucine carboxyl methyl 100.0 8.4E-32 2.9E-36 297.3 25.4 247 3-280 410-674 (695)
15 2uvk_A YJHT; unknown function, 100.0 1.7E-30 5.7E-35 262.7 23.8 220 3-235 84-350 (357)
16 2zwa_A Leucine carboxyl methyl 100.0 4.1E-29 1.4E-33 275.8 25.4 239 24-299 383-634 (695)
17 1k3i_A Galactose oxidase precu 99.9 1.1E-25 3.9E-30 246.5 19.6 257 4-308 218-551 (656)
18 1k3i_A Galactose oxidase precu 99.9 6E-24 2E-28 232.8 18.7 241 6-282 167-477 (656)
19 3mbr_X Glutamine cyclotransfer 97.6 0.028 9.6E-07 53.4 25.1 161 29-229 20-181 (243)
20 3dsm_A Uncharacterized protein 97.2 0.18 6.1E-06 49.1 27.8 188 5-229 17-214 (328)
21 3nol_A Glutamine cyclotransfer 97.1 0.11 3.6E-06 49.9 22.1 158 31-229 44-203 (262)
22 3nok_A Glutaminyl cyclase; bet 97.1 0.054 1.8E-06 52.1 20.0 156 31-229 56-212 (268)
23 3mbr_X Glutamine cyclotransfer 97.1 0.081 2.8E-06 50.2 20.6 171 5-209 43-223 (243)
24 3dsm_A Uncharacterized protein 96.8 0.41 1.4E-05 46.4 23.9 184 5-229 64-255 (328)
25 2iwa_A Glutamine cyclotransfer 96.6 0.51 1.8E-05 45.2 23.7 159 32-229 23-183 (266)
26 3nol_A Glutamine cyclotransfer 96.3 0.44 1.5E-05 45.6 19.6 171 5-209 65-244 (262)
27 2iwa_A Glutamine cyclotransfer 95.4 1.9 6.6E-05 41.1 23.2 183 5-227 44-237 (266)
28 1l0q_A Surface layer protein; 94.9 1 3.5E-05 43.8 17.3 174 5-229 12-191 (391)
29 2hqs_A Protein TOLB; TOLB, PAL 94.8 1.1 3.9E-05 44.9 17.8 182 5-229 203-389 (415)
30 3v9f_A Two-component system se 94.8 0.73 2.5E-05 50.4 17.5 183 5-227 469-656 (781)
31 3nok_A Glutaminyl cyclase; bet 94.5 1.4 4.6E-05 42.3 16.3 136 7-176 77-214 (268)
32 4a2l_A BT_4663, two-component 94.2 0.88 3E-05 49.9 16.4 173 5-211 471-650 (795)
33 3bws_A Protein LP49; two-domai 94.0 1.8 6.3E-05 42.6 17.0 185 6-228 102-293 (433)
34 3bws_A Protein LP49; two-domai 93.7 5.4 0.00018 39.1 19.8 184 6-228 145-335 (433)
35 1l0q_A Surface layer protein; 93.5 2.2 7.5E-05 41.4 16.3 175 5-228 96-276 (391)
36 3jrp_A Fusion protein of prote 93.3 2.1 7.1E-05 40.9 15.5 138 5-173 79-241 (379)
37 2hqs_A Protein TOLB; TOLB, PAL 92.9 4 0.00014 40.7 17.5 183 5-230 159-347 (415)
38 2ojh_A Uncharacterized protein 92.7 4.1 0.00014 36.9 16.1 145 5-180 22-170 (297)
39 3v9f_A Two-component system se 92.7 6.2 0.00021 42.9 20.0 182 6-230 428-614 (781)
40 1gxr_A ESG1, transducin-like e 92.1 5 0.00017 37.4 16.1 146 39-228 108-256 (337)
41 1kb0_A Quinohemoprotein alcoho 92.0 13 0.00045 39.9 21.3 111 5-128 87-208 (677)
42 2ojh_A Uncharacterized protein 92.0 6.8 0.00023 35.4 16.8 191 5-230 62-261 (297)
43 3c5m_A Oligogalacturonate lyas 91.7 3.3 0.00011 39.9 14.8 155 5-180 168-337 (396)
44 1gxr_A ESG1, transducin-like e 91.4 7 0.00024 36.3 16.4 175 5-228 119-297 (337)
45 1k8k_C P40, ARP2/3 complex 41 91.4 6.9 0.00024 37.1 16.6 138 5-171 30-172 (372)
46 3pe7_A Oligogalacturonate lyas 90.7 12 0.00041 35.9 17.7 154 6-180 61-233 (388)
47 2ovr_B FBW7, F-BOX/WD repeat p 90.6 14 0.00049 36.4 21.7 155 38-226 287-441 (445)
48 2xdw_A Prolyl endopeptidase; a 90.5 11 0.00038 40.3 18.8 196 6-226 152-367 (710)
49 3jrp_A Fusion protein of prote 90.5 12 0.0004 35.4 17.8 179 6-227 34-240 (379)
50 3fm0_A Protein CIAO1; WDR39,SG 90.4 5.8 0.0002 38.1 15.1 173 6-213 39-217 (345)
51 1k8k_C P40, ARP2/3 complex 41 90.3 5.6 0.00019 37.8 14.7 150 39-226 19-172 (372)
52 3vgz_A Uncharacterized protein 90.3 12 0.00041 35.1 21.6 142 5-179 164-310 (353)
53 3vgz_A Uncharacterized protein 90.2 12 0.00042 35.1 22.1 183 5-229 111-305 (353)
54 4a2l_A BT_4663, two-component 89.9 21 0.00072 38.7 20.7 144 5-180 107-252 (795)
55 1pjx_A Dfpase, DIISOPROPYLFLUO 89.9 12 0.00041 34.6 18.7 189 5-226 46-255 (314)
56 4ery_A WD repeat-containing pr 89.8 13 0.00043 34.7 19.2 149 39-228 118-269 (312)
57 2z3z_A Dipeptidyl aminopeptida 89.6 13 0.00046 39.2 18.4 194 5-229 235-437 (706)
58 3g4e_A Regucalcin; six bladed 89.4 14 0.00047 34.6 18.7 184 5-227 35-229 (297)
59 3u4y_A Uncharacterized protein 88.5 16 0.00054 34.1 17.8 133 5-172 20-160 (331)
60 2ghs_A AGR_C_1268P; regucalcin 88.2 17 0.00059 34.6 16.6 136 5-171 71-209 (326)
61 3q7m_A Lipoprotein YFGL, BAMB; 87.3 22 0.00074 34.3 21.8 140 5-178 63-215 (376)
62 3azo_A Aminopeptidase; POP fam 87.0 20 0.0007 37.4 17.6 148 61-233 217-375 (662)
63 2z3z_A Dipeptidyl aminopeptida 86.9 20 0.00069 37.8 17.5 65 111-179 234-301 (706)
64 3q7m_A Lipoprotein YFGL, BAMB; 86.8 23 0.00079 34.1 20.9 114 34-179 48-171 (376)
65 3pe7_A Oligogalacturonate lyas 86.1 24 0.00082 33.7 16.3 157 5-181 168-338 (388)
66 1pby_B Quinohemoprotein amine 85.7 9.3 0.00032 35.5 12.8 91 113-229 220-312 (337)
67 3jro_A Fusion protein of prote 85.6 12 0.00043 40.4 15.3 94 6-122 32-133 (753)
68 3ju4_A Endo-N-acetylneuraminid 85.5 30 0.001 35.0 16.2 184 14-211 269-482 (670)
69 3vl1_A 26S proteasome regulato 85.4 27 0.00094 33.6 16.9 104 39-175 108-215 (420)
70 1r5m_A SIR4-interacting protei 85.1 27 0.00093 33.3 16.6 135 61-228 227-362 (425)
71 1p22_A F-BOX/WD-repeat protein 84.6 32 0.0011 33.8 18.9 172 6-228 154-326 (435)
72 2dg1_A DRP35, lactonase; beta 84.6 11 0.00039 35.3 12.9 156 39-226 55-212 (333)
73 3azo_A Aminopeptidase; POP fam 84.4 13 0.00046 38.9 14.5 150 5-180 217-377 (662)
74 3fm0_A Protein CIAO1; WDR39,SG 84.2 19 0.00063 34.4 14.4 152 39-229 27-183 (345)
75 1kb0_A Quinohemoprotein alcoho 84.2 48 0.0017 35.5 20.1 127 33-179 71-208 (677)
76 1jmx_B Amine dehydrogenase; ox 84.0 17 0.00057 34.0 13.8 148 5-177 21-180 (349)
77 3e5z_A Putative gluconolactona 84.0 26 0.00089 32.3 16.5 142 5-175 50-206 (296)
78 2ad6_A Methanol dehydrogenase 83.7 46 0.0016 34.8 19.0 109 5-127 73-193 (571)
79 1jmx_B Amine dehydrogenase; ox 83.3 9.1 0.00031 35.8 11.5 68 39-126 10-79 (349)
80 2dg1_A DRP35, lactonase; beta 83.3 11 0.00036 35.6 12.0 143 6-172 67-213 (333)
81 1yr2_A Prolyl oligopeptidase; 83.0 40 0.0014 36.1 17.9 194 6-226 190-394 (741)
82 1p22_A F-BOX/WD-repeat protein 82.9 30 0.001 34.0 15.8 107 35-174 138-244 (435)
83 1q7f_A NHL, brain tumor CG1071 82.9 28 0.00095 31.8 21.1 181 6-226 52-237 (286)
84 2ecf_A Dipeptidyl peptidase IV 82.7 16 0.00056 38.7 14.5 66 112-180 263-329 (741)
85 4ery_A WD repeat-containing pr 82.5 30 0.001 31.9 20.1 145 39-228 76-224 (312)
86 3mkq_A Coatomer beta'-subunit; 82.4 27 0.00093 37.3 16.2 134 5-174 35-174 (814)
87 3dwl_C Actin-related protein 2 82.2 4.2 0.00015 39.0 8.8 136 5-172 33-177 (377)
88 1ri6_A Putative isomerase YBHE 81.7 26 0.00088 32.4 14.0 151 5-180 151-318 (343)
89 3dwl_C Actin-related protein 2 81.0 4.1 0.00014 39.2 8.2 149 39-226 22-176 (377)
90 3hfq_A Uncharacterized protein 80.7 38 0.0013 31.8 16.6 150 5-180 63-228 (347)
91 3ow8_A WD repeat-containing pr 80.4 39 0.0013 31.8 19.7 145 39-227 133-279 (321)
92 1yiq_A Quinohemoprotein alcoho 80.3 44 0.0015 35.9 16.9 125 34-178 65-200 (689)
93 3ott_A Two-component system se 80.1 35 0.0012 36.7 16.1 110 39-178 482-592 (758)
94 3hfq_A Uncharacterized protein 79.4 18 0.00063 34.1 12.3 108 63-185 213-332 (347)
95 1ri6_A Putative isomerase YBHE 79.4 39 0.0013 31.2 17.6 107 61-180 151-272 (343)
96 3u4y_A Uncharacterized protein 79.1 40 0.0014 31.2 15.1 111 39-180 9-125 (331)
97 2z2n_A Virginiamycin B lyase; 79.1 37 0.0013 30.7 20.9 170 6-225 79-253 (299)
98 2aq5_A Coronin-1A; WD40 repeat 78.8 48 0.0017 31.9 15.9 110 41-174 145-256 (402)
99 3c5m_A Oligogalacturonate lyas 78.7 32 0.0011 32.7 13.9 110 61-180 168-281 (396)
100 3ei3_B DNA damage-binding prot 78.6 46 0.0016 31.6 18.4 177 6-228 97-283 (383)
101 4aow_A Guanine nucleotide-bind 78.3 42 0.0014 30.9 15.0 91 62-174 196-288 (340)
102 1nir_A Nitrite reductase; hemo 78.0 24 0.00083 36.6 13.5 150 61-229 302-460 (543)
103 2bkl_A Prolyl endopeptidase; m 78.0 25 0.00084 37.5 13.9 196 5-226 147-350 (695)
104 2ovr_B FBW7, F-BOX/WD repeat p 77.7 55 0.0019 32.0 20.4 146 39-229 248-393 (445)
105 1rwi_B Serine/threonine-protei 77.7 39 0.0013 30.2 17.1 144 39-227 77-222 (270)
106 1erj_A Transcriptional repress 77.2 45 0.0015 32.3 14.7 105 39-175 134-241 (393)
107 3mkq_A Coatomer beta'-subunit; 77.2 79 0.0027 33.5 18.4 176 5-227 77-259 (814)
108 4e54_B DNA damage-binding prot 76.5 14 0.00049 36.5 10.9 104 39-173 176-283 (435)
109 1q7f_A NHL, brain tumor CG1071 76.2 45 0.0016 30.3 20.0 136 39-208 131-268 (286)
110 2ecf_A Dipeptidyl peptidase IV 75.1 37 0.0013 35.9 14.4 58 61-129 129-189 (741)
111 4aez_A CDC20, WD repeat-contai 74.9 62 0.0021 31.2 17.2 134 61-227 113-248 (401)
112 1rwi_B Serine/threonine-protei 74.9 46 0.0016 29.7 17.8 174 6-227 88-264 (270)
113 1yiq_A Quinohemoprotein alcoho 74.5 96 0.0033 33.2 23.1 110 5-127 80-200 (689)
114 2pm9_A Protein WEB1, protein t 74.4 60 0.002 30.9 14.6 151 40-227 178-337 (416)
115 3g4e_A Regucalcin; six bladed 74.2 55 0.0019 30.3 15.9 182 5-210 73-262 (297)
116 1xfd_A DIP, dipeptidyl aminope 74.2 57 0.0019 34.3 15.5 114 6-129 38-151 (723)
117 2bkl_A Prolyl endopeptidase; m 74.2 69 0.0023 33.9 16.2 104 60-178 251-357 (695)
118 1nir_A Nitrite reductase; hemo 73.9 86 0.0029 32.3 18.7 144 61-227 248-402 (543)
119 2xdw_A Prolyl endopeptidase; a 73.8 96 0.0033 32.8 23.0 144 60-229 258-416 (710)
120 1qks_A Cytochrome CD1 nitrite 73.7 85 0.0029 32.8 16.4 149 61-228 320-478 (567)
121 1pex_A Collagenase-3, MMP-13; 73.6 52 0.0018 29.7 13.0 105 39-174 79-194 (207)
122 1qks_A Cytochrome CD1 nitrite 73.5 93 0.0032 32.5 16.8 145 61-227 266-421 (567)
123 2z2n_A Virginiamycin B lyase; 73.3 53 0.0018 29.6 21.7 172 6-225 37-211 (299)
124 1qhu_A Protein (hemopexin); be 72.8 46 0.0016 34.1 13.6 59 39-122 158-216 (460)
125 3iuj_A Prolyl endopeptidase; h 72.1 75 0.0026 33.8 15.9 148 5-181 259-414 (693)
126 3jro_A Fusion protein of prote 72.0 20 0.0007 38.7 11.4 54 5-71 77-133 (753)
127 3zwl_B Eukaryotic translation 71.6 64 0.0022 29.8 15.7 150 39-227 186-346 (369)
128 3scy_A Hypothetical bacterial 70.9 29 0.001 32.9 11.2 107 61-179 233-346 (361)
129 2qc5_A Streptogramin B lactona 70.4 61 0.0021 29.2 19.0 172 5-225 83-258 (300)
130 4g56_B MGC81050 protein; prote 70.4 61 0.0021 31.0 13.5 105 39-174 150-260 (357)
131 1k32_A Tricorn protease; prote 69.9 51 0.0017 37.0 14.4 105 61-178 358-467 (1045)
132 1itv_A MMP9; adaptive molecula 69.6 61 0.0021 28.9 12.3 104 39-174 64-176 (195)
133 3ow8_A WD repeat-containing pr 69.5 75 0.0026 29.8 19.3 137 39-213 175-313 (321)
134 2qc5_A Streptogramin B lactona 69.2 65 0.0022 29.0 20.0 172 5-225 41-216 (300)
135 3ott_A Two-component system se 68.8 53 0.0018 35.2 13.9 132 5-172 493-626 (758)
136 1got_B GT-beta; complex (GTP-b 68.7 78 0.0027 29.7 19.1 137 39-213 195-335 (340)
137 2ghs_A AGR_C_1268P; regucalcin 68.6 79 0.0027 29.8 19.5 147 40-226 61-209 (326)
138 3k26_A Polycomb protein EED; W 68.4 75 0.0026 29.4 16.4 107 96-228 85-193 (366)
139 2hes_X YDR267CP; beta-propelle 67.9 80 0.0027 29.6 15.6 144 39-212 164-319 (330)
140 4gqb_B Methylosome protein 50; 67.2 89 0.003 29.8 14.0 107 95-228 138-247 (344)
141 4gga_A P55CDC, cell division c 67.0 96 0.0033 30.1 17.7 95 61-175 125-221 (420)
142 1qhu_A Protein (hemopexin); be 66.6 45 0.0015 34.2 11.9 132 5-171 167-330 (460)
143 1pby_B Quinohemoprotein amine 66.6 78 0.0027 28.9 16.0 143 61-229 11-165 (337)
144 1kv9_A Type II quinohemoprotei 66.1 91 0.0031 33.2 14.9 124 34-178 61-195 (668)
145 3e5z_A Putative gluconolactona 65.9 80 0.0027 28.8 17.7 187 5-228 90-287 (296)
146 1xfd_A DIP, dipeptidyl aminope 65.7 1.3E+02 0.0045 31.4 16.0 66 112-179 228-296 (723)
147 2gop_A Trilobed protease; beta 65.6 86 0.003 29.1 13.4 104 61-180 85-215 (347)
148 3zwl_B Eukaryotic translation 65.2 83 0.0028 29.0 13.0 108 39-173 229-347 (369)
149 3vl1_A 26S proteasome regulato 64.9 99 0.0034 29.5 20.2 94 6-124 120-215 (420)
150 3b7f_A Glycosyl hydrolase, BNR 64.9 1.1E+02 0.0036 29.8 17.6 195 6-233 32-268 (394)
151 2p4o_A Hypothetical protein; p 64.5 91 0.0031 29.0 18.3 110 39-172 82-198 (306)
152 3ei3_B DNA damage-binding prot 64.5 97 0.0033 29.3 14.3 145 41-227 87-236 (383)
153 3no2_A Uncharacterized protein 63.4 94 0.0032 28.7 16.9 173 5-227 15-195 (276)
154 2ad6_A Methanol dehydrogenase 62.9 57 0.0019 34.1 12.3 125 33-178 56-193 (571)
155 1w6s_A Methanol dehydrogenase 62.5 1.6E+02 0.0054 31.0 18.9 110 5-128 73-200 (599)
156 1pex_A Collagenase-3, MMP-13; 62.1 90 0.0031 28.1 12.8 146 34-228 28-193 (207)
157 3scy_A Hypothetical bacterial 61.8 51 0.0018 31.1 10.9 97 62-172 30-129 (361)
158 1itv_A MMP9; adaptive molecula 61.7 86 0.003 27.9 11.6 149 34-228 11-175 (195)
159 3v7d_B Cell division control p 61.6 1.2E+02 0.0042 29.5 20.2 135 5-176 290-425 (464)
160 4aow_A Guanine nucleotide-bind 61.5 87 0.003 28.6 12.3 136 6-173 196-338 (340)
161 1gen_A Gelatinase A; hydrolase 61.4 89 0.0031 28.3 11.9 105 39-173 87-203 (218)
162 2ece_A 462AA long hypothetical 61.3 1.5E+02 0.005 30.4 14.5 163 5-180 106-297 (462)
163 1kv9_A Type II quinohemoprotei 60.8 1.7E+02 0.0059 30.9 22.7 109 5-127 76-195 (668)
164 1vyh_C Platelet-activating fac 60.5 1.3E+02 0.0043 29.3 16.8 105 39-176 161-269 (410)
165 3o4h_A Acylamino-acid-releasin 60.4 73 0.0025 32.6 12.5 98 63-176 134-231 (582)
166 1k32_A Tricorn protease; prote 59.9 2E+02 0.0068 32.0 16.9 140 62-229 318-463 (1045)
167 3ba0_A Macrophage metalloelast 59.2 1E+02 0.0036 30.3 12.8 109 39-177 236-355 (365)
168 1pjx_A Dfpase, DIISOPROPYLFLUO 58.6 1.1E+02 0.0037 27.8 16.1 110 61-179 46-168 (314)
169 4gqb_B Methylosome protein 50; 57.7 1.3E+02 0.0045 28.6 16.3 105 39-174 138-248 (344)
170 1yr2_A Prolyl oligopeptidase; 57.2 2E+02 0.0069 30.5 22.2 104 60-178 293-401 (741)
171 3dr2_A Exported gluconolactona 56.7 77 0.0026 29.3 11.0 105 61-180 169-275 (305)
172 2vdu_B TRNA (guanine-N(7)-)-me 56.3 1.5E+02 0.0052 28.9 15.7 62 112-176 330-397 (450)
173 3i2n_A WD repeat-containing pr 56.1 1.2E+02 0.0042 27.8 12.6 140 5-176 44-203 (357)
174 1flg_A Protein (quinoprotein e 56.1 1.9E+02 0.0067 30.0 16.4 121 34-177 63-200 (582)
175 1r5m_A SIR4-interacting protei 55.9 1.4E+02 0.0046 28.2 18.6 149 39-228 160-320 (425)
176 3v7d_B Cell division control p 55.3 1.6E+02 0.0053 28.7 21.4 144 39-229 279-423 (464)
177 3iuj_A Prolyl endopeptidase; h 54.8 2.1E+02 0.0073 30.1 20.8 103 61-179 259-366 (693)
178 2pm9_A Protein WEB1, protein t 53.2 1E+02 0.0035 29.2 11.5 69 96-177 126-202 (416)
179 2xbg_A YCF48-like protein; pho 52.8 1.5E+02 0.0053 27.9 19.6 156 14-209 65-223 (327)
180 3b7f_A Glycosyl hydrolase, BNR 52.3 1.7E+02 0.0058 28.2 16.0 152 62-233 32-214 (394)
181 3hrp_A Uncharacterized protein 52.2 1.8E+02 0.0062 28.5 17.0 152 39-227 141-298 (409)
182 4aez_A CDC20, WD repeat-contai 52.1 1.7E+02 0.0056 28.0 20.7 180 5-228 113-294 (401)
183 3i2n_A WD repeat-containing pr 52.0 1.4E+02 0.0049 27.3 12.8 154 40-229 31-201 (357)
184 1su3_A Interstitial collagenas 51.3 1.3E+02 0.0044 30.6 12.2 108 39-176 318-436 (450)
185 2ynn_A Coatomer subunit beta'; 51.2 1.5E+02 0.005 27.2 17.7 148 39-227 66-217 (304)
186 2gop_A Trilobed protease; beta 50.5 1.5E+02 0.0053 27.2 13.2 106 59-180 41-170 (347)
187 3sfz_A APAF-1, apoptotic pepti 49.7 1.4E+02 0.0048 33.6 13.5 145 39-227 1014-1158(1249)
188 2hes_X YDR267CP; beta-propelle 49.6 1.6E+02 0.0056 27.3 17.0 71 95-180 118-192 (330)
189 4a11_B DNA excision repair pro 49.4 1.7E+02 0.0057 27.3 16.3 104 39-173 111-219 (408)
190 1pgu_A Actin interacting prote 49.3 2.2E+02 0.0074 28.6 14.2 110 40-173 219-329 (615)
191 1gen_A Gelatinase A; hydrolase 49.3 1.5E+02 0.0052 26.8 12.9 152 34-228 35-203 (218)
192 4e54_B DNA damage-binding prot 49.0 1.2E+02 0.0041 29.5 11.5 107 39-173 131-241 (435)
193 2aq5_A Coronin-1A; WD40 repeat 48.6 1.8E+02 0.0063 27.6 14.7 148 6-180 155-309 (402)
194 2pbi_B Guanine nucleotide-bind 47.4 1.9E+02 0.0064 27.3 19.4 104 40-174 210-317 (354)
195 3mmy_A MRNA export factor; mRN 47.3 1.2E+02 0.004 27.9 10.6 104 40-174 54-162 (368)
196 2vdu_B TRNA (guanine-N(7)-)-me 46.7 2.1E+02 0.0073 27.8 19.3 66 40-125 210-275 (450)
197 3dr2_A Exported gluconolactona 46.6 92 0.0032 28.8 9.7 105 61-174 107-226 (305)
198 1pgu_A Actin interacting prote 46.4 2.4E+02 0.0081 28.2 18.4 103 61-177 183-288 (615)
199 3odt_A Protein DOA1; ubiquitin 45.8 1.6E+02 0.0056 26.2 14.5 108 37-178 193-302 (313)
200 1w6s_A Methanol dehydrogenase 45.6 1E+02 0.0035 32.5 10.8 126 33-179 56-200 (599)
201 4d9s_A UVB-resistance protein 44.8 2.3E+02 0.008 27.7 14.8 18 87-104 234-252 (406)
202 3sfz_A APAF-1, apoptotic pepti 44.7 3.8E+02 0.013 30.0 16.2 144 39-228 626-775 (1249)
203 3c7x_A Matrix metalloproteinas 44.6 1.5E+02 0.0051 26.3 10.2 104 38-173 60-176 (196)
204 2xbg_A YCF48-like protein; pho 43.2 2.2E+02 0.0074 26.8 18.9 156 13-208 23-180 (327)
205 1erj_A Transcriptional repress 43.0 2.3E+02 0.0078 27.0 16.8 107 39-173 176-288 (393)
206 3k26_A Polycomb protein EED; W 42.9 2E+02 0.0068 26.3 14.6 104 40-173 85-193 (366)
207 1sq9_A Antiviral protein SKI8; 42.4 2.2E+02 0.0074 26.6 16.5 71 146-228 197-268 (397)
208 3odt_A Protein DOA1; ubiquitin 41.9 1.9E+02 0.0065 25.8 19.0 106 94-230 194-299 (313)
209 2pbi_B Guanine nucleotide-bind 40.8 2.4E+02 0.0081 26.6 17.9 135 61-227 176-315 (354)
210 3dm0_A Maltose-binding peripla 40.6 3.3E+02 0.011 28.3 17.9 93 61-175 541-635 (694)
211 3no2_A Uncharacterized protein 40.4 2.2E+02 0.0075 26.1 15.6 166 5-208 56-230 (276)
212 1sq9_A Antiviral protein SKI8; 40.2 2.3E+02 0.008 26.4 15.2 106 5-124 207-325 (397)
213 1vyh_C Platelet-activating fac 39.9 2.6E+02 0.009 26.9 19.6 65 39-125 203-269 (410)
214 3iz6_a 40S ribosomal protein R 39.8 2.5E+02 0.0086 26.6 21.5 142 39-213 217-367 (380)
215 4gga_A P55CDC, cell division c 38.3 2.8E+02 0.0094 26.6 16.7 94 5-123 125-220 (420)
216 1su3_A Interstitial collagenas 37.4 3.4E+02 0.012 27.4 15.6 151 34-229 267-434 (450)
217 2mad_H Methylamine dehydrogena 37.2 2.9E+02 0.01 26.6 12.9 71 95-176 278-354 (373)
218 2p9w_A MAL S 1 allergenic prot 36.1 3.1E+02 0.011 26.6 15.4 146 39-211 147-305 (334)
219 1yfq_A Cell cycle arrest prote 35.7 2.5E+02 0.0086 25.4 14.2 104 39-172 67-179 (342)
220 2ymu_A WD-40 repeat protein; u 35.7 3.4E+02 0.012 26.9 14.7 133 39-212 437-571 (577)
221 3dm0_A Maltose-binding peripla 35.3 4E+02 0.014 27.6 15.8 146 39-227 441-592 (694)
222 3c7x_A Matrix metalloproteinas 34.8 1.1E+02 0.0038 27.1 7.7 108 34-173 10-128 (196)
223 1got_B GT-beta; complex (GTP-b 34.7 2.8E+02 0.0096 25.7 22.5 136 61-227 164-301 (340)
224 3sjl_D Methylamine dehydrogena 34.1 1.6E+02 0.0056 29.1 9.5 71 95-176 291-367 (386)
225 1z68_A Fibroblast activation p 33.9 1.1E+02 0.0037 32.1 8.8 108 5-128 36-146 (719)
226 4a11_B DNA excision repair pro 33.7 2.3E+02 0.008 26.3 10.5 108 39-173 256-366 (408)
227 3iz6_a 40S ribosomal protein R 33.2 3.2E+02 0.011 25.8 16.2 141 61-227 180-329 (380)
228 4h5i_A Guanine nucleotide-exch 33.0 3.2E+02 0.011 25.8 17.5 134 62-213 198-335 (365)
229 2ece_A 462AA long hypothetical 32.8 4.1E+02 0.014 27.0 15.8 122 39-173 95-238 (462)
230 2mad_H Methylamine dehydrogena 32.6 3.5E+02 0.012 26.1 21.4 69 146-229 278-352 (373)
231 2fp8_A Strictosidine synthase; 30.3 3.2E+02 0.011 25.1 14.2 140 5-173 165-314 (322)
232 3oyo_A Hemopexin fold protein 29.0 2.8E+02 0.0094 25.1 9.5 61 39-120 127-197 (225)
233 4d9s_A UVB-resistance protein 28.5 4.2E+02 0.014 25.8 15.8 18 87-104 182-200 (406)
234 3fvz_A Peptidyl-glycine alpha- 28.3 3.6E+02 0.012 24.9 19.9 118 33-171 199-321 (329)
235 3oyo_A Hemopexin fold protein 27.7 3.4E+02 0.012 24.5 13.1 61 95-171 127-197 (225)
236 3gre_A Serine/threonine-protei 27.4 4.1E+02 0.014 25.3 17.3 108 39-175 181-295 (437)
237 2xyi_A Probable histone-bindin 27.3 2.1E+02 0.0074 27.6 9.2 64 98-173 196-264 (430)
238 3f3f_A Nucleoporin SEH1; struc 27.1 3.3E+02 0.011 24.2 11.3 106 39-173 22-144 (351)
239 3fvz_A Peptidyl-glycine alpha- 25.8 3.9E+02 0.014 24.6 27.1 160 39-226 154-321 (329)
240 3bg1_A Protein SEC13 homolog; 24.9 2.6E+02 0.009 25.6 8.9 111 39-178 24-143 (316)
241 2pm7_B Protein transport prote 24.6 3.9E+02 0.013 24.1 11.0 122 39-183 169-297 (297)
242 1npe_A Nidogen, entactin; glyc 23.6 3.8E+02 0.013 23.7 18.7 110 39-178 133-244 (267)
243 3hxj_A Pyrrolo-quinoline quino 23.3 4.1E+02 0.014 23.9 10.7 101 38-178 106-211 (330)
244 3hx6_A Type 4 fimbrial biogene 23.2 6.6E+02 0.023 26.3 18.7 151 41-208 152-348 (570)
245 4a5s_A Dipeptidyl peptidase 4 23.0 6.7E+02 0.023 26.3 15.4 111 6-129 37-149 (740)
246 4g56_B MGC81050 protein; prote 22.9 2.1E+02 0.0073 26.9 8.0 28 95-122 53-80 (357)
247 2p9w_A MAL S 1 allergenic prot 22.6 5.3E+02 0.018 24.9 13.3 130 5-156 159-305 (334)
248 3bg1_A Protein SEC13 homolog; 22.6 2.3E+02 0.0077 26.1 7.9 100 95-212 24-127 (316)
249 2ynn_A Coatomer subunit beta'; 22.3 4.3E+02 0.015 23.8 15.6 105 39-173 24-129 (304)
250 3lrv_A PRE-mRNA-splicing facto 22.2 4.6E+02 0.016 24.1 17.2 150 39-229 47-203 (343)
251 4ggc_A P55CDC, cell division c 22.2 4.1E+02 0.014 23.5 13.4 139 5-174 45-183 (318)
252 4a5s_A Dipeptidyl peptidase 4 20.9 3.6E+02 0.012 28.5 10.0 61 112-174 228-296 (740)
253 3o4h_A Acylamino-acid-releasin 20.8 1.9E+02 0.0066 29.3 7.5 97 6-125 133-231 (582)
No 1
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=8.2e-35 Score=288.12 Aligned_cols=233 Identities=17% Similarity=0.216 Sum_probs=199.2
Q ss_pred cCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
++++++||+.+++|..+ +++|.+|.+|++++++++|||+||.. ...++++++||+.+++|++++.+ |
T Consensus 23 ~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~-------~~~~~~~~~~d~~~~~W~~~~~~---p 89 (306)
T 3ii7_A 23 PQSCRYFNPKDYSWTDI---RCPFEKRRDAACVFWDNVVYILGGSQ-------LFPIKRMDCYNVVKDSWYSKLGP---P 89 (306)
T ss_dssp TTSEEEEETTTTEEEEC---CCCSCCCBSCEEEEETTEEEEECCBS-------SSBCCEEEEEETTTTEEEEEECC---S
T ss_pred CceEEEecCCCCCEecC---CCCCcccceeEEEEECCEEEEEeCCC-------CCCcceEEEEeCCCCeEEECCCC---C
Confidence 68999999999999998 57899999999999999999999974 34678999999999999999765 8
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCC---
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--- 160 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~--- 160 (473)
.+|..|++++++++|||+||.+.....++++++||+.+++|+.++. +|.+|..|+++.++++|||+||......
T Consensus 90 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~ 166 (306)
T 3ii7_A 90 TPRDSLAACAAEGKIYTSGGSEVGNSALYLFECYDTRTESWHTKPS---MLTQRCSHGMVEANGLIYVCGGSLGNNVSGR 166 (306)
T ss_dssp SCCBSCEEEEETTEEEEECCBBTTBSCCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEESCTTTCE
T ss_pred ccccceeEEEECCEEEEECCCCCCCcEeeeEEEEeCCCCceEeCCC---CcCCcceeEEEEECCEEEEECCCCCCCCccc
Confidence 9999999999999999999997555678999999999999999976 8999999999999999999999865433
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhh
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRK 240 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~ 240 (473)
.++++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ..+++++.||+.+.+|..+..++
T Consensus 167 ~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~p--- 235 (306)
T 3ii7_A 167 VLNSCEVYDPATETWTELCP---MIEARKNHGLVFV----KDKIFAVGGQNGL-GGLDNVEYYDIKLNEWKMVSPMP--- 235 (306)
T ss_dssp ECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEECCEETT-EEBCCEEEEETTTTEEEECCCCS---
T ss_pred ccceEEEeCCCCCeEEECCC---ccchhhcceEEEE----CCEEEEEeCCCCC-CCCceEEEeeCCCCcEEECCCCC---
Confidence 38999999999999999975 5788999998876 7899999998774 57899999999999998764322
Q ss_pred hccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 241 QLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 241 ~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
.++..+..+.+ ++.|+++||...
T Consensus 236 -----------~~r~~~~~~~~--------~~~i~v~GG~~~ 258 (306)
T 3ii7_A 236 -----------WKGVTVKCAAV--------GSIVYVLAGFQG 258 (306)
T ss_dssp -----------CCBSCCEEEEE--------TTEEEEEECBCS
T ss_pred -----------CCccceeEEEE--------CCEEEEEeCcCC
Confidence 22333334443 335999999754
No 2
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=1.7e-34 Score=285.37 Aligned_cols=209 Identities=15% Similarity=0.246 Sum_probs=185.6
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.++++++||+.+++|..+ +++|.+|.+|+++.++++|||+||... ...++++|+||+.+++|++++.+
T Consensus 28 ~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~--- 95 (302)
T 2xn4_A 28 AIRSVECYDFKEERWHQV---AELPSRRCRAGMVYMAGLVFAVGGFNG------SLRVRTVDSYDPVKDQWTSVANM--- 95 (302)
T ss_dssp BCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEESCBCS------SSBCCCEEEEETTTTEEEEECCC---
T ss_pred CCCcEEEEcCcCCcEeEc---ccCCcccccceEEEECCEEEEEeCcCC------CccccceEEECCCCCceeeCCCC---
Confidence 578999999999999998 588999999999999999999999742 23578999999999999999755
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC-Cc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ-NL 161 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~-~~ 161 (473)
|.+|..|++++++++|||+||.++.. .++++|+||+.+++|+.+++ +|.+|..|+++.++++|||+||..... ..
T Consensus 96 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 171 (302)
T 2xn4_A 96 RDRRSTLGAAVLNGLLYAVGGFDGST-GLSSVEAYNIKSNEWFHVAP---MNTRRSSVGVGVVGGLLYAVGGYDVASRQC 171 (302)
T ss_dssp SSCCBSCEEEEETTEEEEEEEECSSC-EEEEEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETTTTEE
T ss_pred CccccceEEEEECCEEEEEcCCCCCc-cCceEEEEeCCCCeEeecCC---CCCcccCceEEEECCEEEEEeCCCCCCCcc
Confidence 89999999999999999999987654 78999999999999999986 899999999999999999999986543 46
Q ss_pred cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 162 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
++++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+. ....++++.||+.+.+|..+..
T Consensus 172 ~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~iyv~GG~~~-~~~~~~~~~yd~~~~~W~~~~~ 237 (302)
T 2xn4_A 172 LSTVECYNATTNEWTYIAE---MSTRRSGAGVGVL----NNLLYAVGGHDG-PLVRKSVEVYDPTTNAWRQVAD 237 (302)
T ss_dssp CCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEECCBSS-SSBCCCEEEEETTTTEEEEECC
T ss_pred ccEEEEEeCCCCcEEECCC---CccccccccEEEE----CCEEEEECCCCC-CcccceEEEEeCCCCCEeeCCC
Confidence 8999999999999999965 5788999988876 799999999876 3568999999999999987653
No 3
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=2.2e-34 Score=286.11 Aligned_cols=238 Identities=16% Similarity=0.243 Sum_probs=199.5
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
..++++++||+.+++|+.+ +++|.+|.+|++++++++|||+||.... ......++++|+||+.+++|++++++
T Consensus 36 ~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~--~~~~~~~~~~~~~d~~~~~W~~~~~~-- 108 (308)
T 1zgk_A 36 QSLSYLEAYNPSNGTWLRL---ADLQVPRSGLAGCVVGGLLYAVGGRNNS--PDGNTDSSALDCYNPMTNQWSPCAPM-- 108 (308)
T ss_dssp SBCCCEEEEETTTTEEEEC---CCCSSCCBSCEEEEETTEEEEECCEEEE--TTEEEECCCEEEEETTTTEEEECCCC--
T ss_pred CCcceEEEEcCCCCeEeEC---CCCCcccccceEEEECCEEEEECCCcCC--CCCCeecceEEEECCCCCeEeECCCC--
Confidence 4678999999999999998 5889999999999999999999996311 02345679999999999999999755
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
|.+|..|++++++++|||+||.++.. .++++++||+.+++|+.+++ +|.+|..|+++.++++|||+||.... ..
T Consensus 109 -p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~-~~ 182 (308)
T 1zgk_A 109 -SVPRNRIGVGVIDGHIYAVGGSHGCI-HHNSVERYEPERDEWHLVAP---MLTRRIGVGVAVLNRLLYAVGGFDGT-NR 182 (308)
T ss_dssp -SSCCBTCEEEEETTEEEEECCEETTE-ECCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCSS-CB
T ss_pred -CcCccccEEEEECCEEEEEcCCCCCc-ccccEEEECCCCCeEeECCC---CCccccceEEEEECCEEEEEeCCCCC-Cc
Confidence 88999999999999999999987653 68999999999999999986 89999999999999999999998543 45
Q ss_pred cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhh
Q 011998 162 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQ 241 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~ 241 (473)
++++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+. ...+++++.||+.+.+|..+..++
T Consensus 183 ~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~iyv~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~p---- 250 (308)
T 1zgk_A 183 LNSAECYYPERNEWRMITA---MNTIRSGAGVCVL----HNCIYAAGGYDG-QDQLNSVERYDVETETWTFVAPMK---- 250 (308)
T ss_dssp CCCEEEEETTTTEEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCS-SSBCCCEEEEETTTTEEEECCCCS----
T ss_pred CceEEEEeCCCCeEeeCCC---CCCccccceEEEE----CCEEEEEeCCCC-CCccceEEEEeCCCCcEEECCCCC----
Confidence 8999999999999999875 5788999988876 799999999986 456899999999999998755321
Q ss_pred ccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 242 LKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 242 l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
.++..+.++.. +++|+++||...
T Consensus 251 ----------~~r~~~~~~~~--------~~~i~v~GG~~~ 273 (308)
T 1zgk_A 251 ----------HRRSALGITVH--------QGRIYVLGGYDG 273 (308)
T ss_dssp ----------SCCBSCEEEEE--------TTEEEEECCBCS
T ss_pred ----------CCccceEEEEE--------CCEEEEEcCcCC
Confidence 22333333333 345999999654
No 4
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1e-34 Score=289.09 Aligned_cols=240 Identities=15% Similarity=0.184 Sum_probs=198.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+++++||+.+++|.... .+.|.+|.+|++++++++|||+||.............+++|+||+.+++|++++++ |.
T Consensus 13 ~~~~~yd~~~~~W~~~~--~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~ 87 (315)
T 4asc_A 13 EGAVAYDPAANECYCAS--LSSQVPKNHVSLVTKENQVFVAGGLFYNEDNKEDPMSAYFLQFDHLDSEWLGMPPL---PS 87 (315)
T ss_dssp TEEEEEETTTTEEEEEE--CCCCSCSSEEEEECTTCCEEEEEEEEECSSCSSSCEEEEEEEEETTTTEEEECCCB---SS
T ss_pred CceEEECCCCCeEecCC--CCCCCCccceEEEEECCEEEEEcCcccCCCCCccccccceEEecCCCCeEEECCCC---Cc
Confidence 57999999999998732 34477999999999999999999973222223344567899999999999998654 89
Q ss_pred CceeeEEEEECCEEEEEeCCC--CCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSSWKNKIIVIGGED--GHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~--~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
+|.+|++++++++|||+||.+ .....++++|+||+.+++|+++++ +|.+|.+|+++.++++|||+||.......+
T Consensus 88 ~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~ 164 (315)
T 4asc_A 88 PRCLFGLGEALNSIYVVGGREIKDGERCLDSVMCYDRLSFKWGESDP---LPYVVYGHTVLSHMDLVYVIGGKGSDRKCL 164 (315)
T ss_dssp CEESCEEEEETTEEEEECCEESSTTCCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCTTSCBC
T ss_pred chhceeEEEECCEEEEEeCCcCCCCCcccceEEEECCCCCcEeECCC---CCCcccceeEEEECCEEEEEeCCCCCCccc
Confidence 999999999999999999975 234578999999999999999986 899999999999999999999996667789
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhhc
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQL 242 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l 242 (473)
+++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ..+++++.||+.+.+|..+..+
T Consensus 165 ~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~------ 230 (315)
T 4asc_A 165 NKMCVYDPKKFEWKELAP---MQTARSLFGATVH----DGRIIVAAGVTDT-GLTSSAEVYSITDNKWAPFEAF------ 230 (315)
T ss_dssp CCEEEEETTTTEEEECCC---CSSCCBSCEEEEE----TTEEEEEEEECSS-SEEEEEEEEETTTTEEEEECCC------
T ss_pred ceEEEEeCCCCeEEECCC---CCCchhceEEEEE----CCEEEEEeccCCC-CccceEEEEECCCCeEEECCCC------
Confidence 999999999999999875 5789999998876 7899999998764 5789999999999999876432
Q ss_pred cccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 243 KLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 243 ~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
+.++..+.++..+ ++|+++||...
T Consensus 231 --------p~~r~~~~~~~~~--------~~l~v~GG~~~ 254 (315)
T 4asc_A 231 --------PQERSSLSLVSLV--------GTLYAIGGFAT 254 (315)
T ss_dssp --------SSCCBSCEEEEET--------TEEEEEEEEEE
T ss_pred --------CCcccceeEEEEC--------CEEEEECCccc
Confidence 2233333334333 35999999754
No 5
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=9.4e-34 Score=279.56 Aligned_cols=233 Identities=16% Similarity=0.264 Sum_probs=197.5
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe---EEEeecC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTS 79 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~---W~~l~~~ 79 (473)
.++++++||+.+++|..+. .+|.+|.+|+++.++++||++||.. ....++++|+||+.+++ |++++.+
T Consensus 29 ~~~~~~~~d~~~~~W~~~~---~~p~~r~~~~~~~~~~~l~v~GG~~------~~~~~~~~~~~d~~~~~~~~W~~~~~~ 99 (301)
T 2vpj_A 29 PIDVVEKYDPKTQEWSFLP---SITRKRRYVASVSLHDRIYVIGGYD------GRSRLSSVECLDYTADEDGVWYSVAPM 99 (301)
T ss_dssp ECCCEEEEETTTTEEEECC---CCSSCCBSCEEEEETTEEEEECCBC------SSCBCCCEEEEETTCCTTCCCEEECCC
T ss_pred ceeEEEEEcCCCCeEEeCC---CCChhhccccEEEECCEEEEEcCCC------CCccCceEEEEECCCCCCCeeEECCCC
Confidence 4789999999999999984 7888999999999999999999974 23467899999999999 9999654
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC
Q 011998 80 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ 159 (473)
Q Consensus 80 g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~ 159 (473)
|.+|..|++++++++|||+||.++.. .++++++||+.+++|+.+++ +|.+|..|+++.++++||++||... .
T Consensus 100 ---p~~r~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~ 171 (301)
T 2vpj_A 100 ---NVRRGLAGATTLGDMIYVSGGFDGSR-RHTSMERYDPNIDQWSMLGD---MQTAREGAGLVVASGVIYCLGGYDG-L 171 (301)
T ss_dssp ---SSCCBSCEEEEETTEEEEECCBCSSC-BCCEEEEEETTTTEEEEEEE---CSSCCBSCEEEEETTEEEEECCBCS-S
T ss_pred ---CCCccceeEEEECCEEEEEcccCCCc-ccceEEEEcCCCCeEEECCC---CCCCcccceEEEECCEEEEECCCCC-C
Confidence 89999999999999999999998664 68999999999999999986 8999999999999999999999853 4
Q ss_pred CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchh
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLR 239 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~ 239 (473)
..++++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ..+++++.||+.+.+|..+..++
T Consensus 172 ~~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~p-- 241 (301)
T 2vpj_A 172 NILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALL----NDHIYVVGGFDGT-AHLSSVEAYNIRTDSWTTVTSMT-- 241 (301)
T ss_dssp CBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEECCBCSS-SBCCCEEEEETTTTEEEEECCCS--
T ss_pred cccceEEEEeCCCCcEEeCCC---CCcccccceEEEE----CCEEEEEeCCCCC-cccceEEEEeCCCCcEEECCCCC--
Confidence 578999999999999999964 5889999988876 7899999998864 45899999999999998764321
Q ss_pred hhccccccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 240 KQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 240 ~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
.++..+..+.. +++|+++||...
T Consensus 242 ------------~~r~~~~~~~~--------~~~i~v~GG~~~ 264 (301)
T 2vpj_A 242 ------------TPRCYVGATVL--------RGRLYAIAGYDG 264 (301)
T ss_dssp ------------SCCBSCEEEEE--------TTEEEEECCBCS
T ss_pred ------------CcccceeEEEE--------CCEEEEEcCcCC
Confidence 22233333333 345999999654
No 6
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=8.3e-34 Score=282.94 Aligned_cols=239 Identities=16% Similarity=0.227 Sum_probs=194.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
++++||+.+++|.... .+.|.+|.+|+++.++++|||+||.............+++++||+.+++|++++.+ |.+
T Consensus 25 ~~~~yd~~~~~W~~~~--~~~~~~r~~~~~~~~~~~lyv~GG~~~~~~~~~~~~~~~~~~~d~~~~~W~~~~~~---p~~ 99 (318)
T 2woz_A 25 AAVAYDPMENECYLTA--LAEQIPRNHSSIVTQQNQVYVVGGLYVDEENKDQPLQSYFFQLDNVSSEWVGLPPL---PSA 99 (318)
T ss_dssp EEEEEETTTTEEEEEE--ECTTSCSSEEEEECSSSCEEEEESSCC-------CCCBEEEEEETTTTEEEECSCB---SSC
T ss_pred ceEEECCCCCceeccc--CCccCCccceEEEEECCEEEEECCcccCccccCCCccccEEEEeCCCCcEEECCCC---Ccc
Confidence 5899999999999853 24568899999999999999999964221111122345699999999999998654 899
Q ss_pred ceeeEEEEECCEEEEEeCCCC-CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcccc
Q 011998 86 RDSHTCSSWKNKIIVIGGEDG-HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 86 R~~hs~~~~~~~IyV~GG~~~-~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~nd 164 (473)
|..|++++++++|||+||... ....++++|+||+.+++|+.+++ +|.+|.+|+++.++++|||+||.......+++
T Consensus 100 r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~ 176 (318)
T 2woz_A 100 RCLFGLGEVDDKIYVVAGKDLQTEASLDSVLCYDPVAAKWSEVKN---LPIKVYGHNVISHNGMIYCLGGKTDDKKCTNR 176 (318)
T ss_dssp BCSCEEEEETTEEEEEEEEBTTTCCEEEEEEEEETTTTEEEEECC---CSSCEESCEEEEETTEEEEECCEESSSCBCCC
T ss_pred ccccceEEECCEEEEEcCccCCCCcccceEEEEeCCCCCEeECCC---CCCcccccEEEEECCEEEEEcCCCCCCCccce
Confidence 999999999999999999863 34578999999999999999985 89999999999999999999999766678899
Q ss_pred EEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeeccchhhhccc
Q 011998 165 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKLSLRKQLKL 244 (473)
Q Consensus 165 v~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~ 244 (473)
+++||+.+++|+.+.. .|.+|..|+++++ +++|||+||.+.. ..+++++.||+.+.+|..+..+
T Consensus 177 ~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~iyv~GG~~~~-~~~~~~~~yd~~~~~W~~~~~~-------- 240 (318)
T 2woz_A 177 VFIYNPKKGDWKDLAP---MKTPRSMFGVAIH----KGKIVIAGGVTED-GLSASVEAFDLKTNKWEVMTEF-------- 240 (318)
T ss_dssp EEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEEEEEETT-EEEEEEEEEETTTCCEEECCCC--------
T ss_pred EEEEcCCCCEEEECCC---CCCCcccceEEEE----CCEEEEEcCcCCC-CccceEEEEECCCCeEEECCCC--------
Confidence 9999999999999975 5788999988876 7899999998763 4688999999999999875432
Q ss_pred cccccccccCCCcceEEEcceecccCCccEEEECCccc
Q 011998 245 KCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 245 ~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
+.++..+.++..+ +.|+++||...
T Consensus 241 ------p~~r~~~~~~~~~--------~~i~v~GG~~~ 264 (318)
T 2woz_A 241 ------PQERSSISLVSLA--------GSLYAIGGFAM 264 (318)
T ss_dssp ------SSCCBSCEEEEET--------TEEEEECCBCC
T ss_pred ------CCcccceEEEEEC--------CEEEEECCeec
Confidence 2233334444443 35999999755
No 7
>4asc_A Kelch repeat and BTB domain-containing protein 5; protein binding, cytoskeleton; 1.78A {Homo sapiens}
Probab=100.00 E-value=1.6e-33 Score=280.48 Aligned_cols=210 Identities=20% Similarity=0.293 Sum_probs=184.3
Q ss_pred cCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+++++||+.+++|+.+ +++|.+|.+|+++.++++|||+||.... .....++++|+||+.+++|++++++ |
T Consensus 66 ~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~~---~~~~~~~~~~~~d~~~~~W~~~~~~---p 136 (315)
T 4asc_A 66 SAYFLQFDHLDSEWLGM---PPLPSPRCLFGLGEALNSIYVVGGREIK---DGERCLDSVMCYDRLSFKWGESDPL---P 136 (315)
T ss_dssp EEEEEEEETTTTEEEEC---CCBSSCEESCEEEEETTEEEEECCEESS---TTCCBCCCEEEEETTTTEEEECCCC---S
T ss_pred ccceEEecCCCCeEEEC---CCCCcchhceeEEEECCEEEEEeCCcCC---CCCcccceEEEECCCCCcEeECCCC---C
Confidence 35699999999999988 5789999999999999999999997421 2345689999999999999999654 8
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 163 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~n 163 (473)
.+|.+|++++++++|||+||.......++++++||+.+++|+.+++ +|.+|..|+++.++++|||+||... ...++
T Consensus 137 ~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~ 212 (315)
T 4asc_A 137 YVVYGHTVLSHMDLVYVIGGKGSDRKCLNKMCVYDPKKFEWKELAP---MQTARSLFGATVHDGRIIVAAGVTD-TGLTS 212 (315)
T ss_dssp SCCBSCEEEEETTEEEEECCBCTTSCBCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEEEEECS-SSEEE
T ss_pred CcccceeEEEECCEEEEEeCCCCCCcccceEEEEeCCCCeEEECCC---CCCchhceEEEEECCEEEEEeccCC-CCccc
Confidence 9999999999999999999996666689999999999999999986 8999999999999999999999854 35688
Q ss_pred cEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC----C----CccCcEEEEEccccceeee
Q 011998 164 DLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS----L----EALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 164 dv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~----~----~~~~dv~~ld~~~~~w~~~ 233 (473)
++++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+.. . ..++++|.||+.+.+|..+
T Consensus 213 ~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~l~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 283 (315)
T 4asc_A 213 SAEVYSITDNKWAPFEA---FPQERSSLSLVSL----VGTLYAIGGFATLETESGELVPTELNDIWRYNEEEKKWEGV 283 (315)
T ss_dssp EEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEEEEEEEEECTTSCEEEEEEEEEEEEETTTTEEEEE
T ss_pred eEEEEECCCCeEEECCC---CCCcccceeEEEE----CCEEEEECCccccCcCCccccccccCcEEEecCCCChhhhh
Confidence 99999999999999975 5889999988876 7899999998531 1 4678999999999999865
No 8
>3ii7_A Kelch-like protein 7; protein-binding, kelch-repeat, structural genomics, structur genomics consortium, SGC, kelch repeat, nucleus, protein BI; 1.63A {Homo sapiens}
Probab=100.00 E-value=3.2e-33 Score=276.63 Aligned_cols=212 Identities=20% Similarity=0.315 Sum_probs=187.2
Q ss_pred CCcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 2 NPLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
..++++++||+.+++|+.+ +++|.+|.+|++++++++|||+||... ....++++++||+.+++|++++.+
T Consensus 67 ~~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~-----~~~~~~~~~~~d~~~~~W~~~~~~-- 136 (306)
T 3ii7_A 67 FPIKRMDCYNVVKDSWYSK---LGPPTPRDSLAACAAEGKIYTSGGSEV-----GNSALYLFECYDTRTESWHTKPSM-- 136 (306)
T ss_dssp SBCCEEEEEETTTTEEEEE---ECCSSCCBSCEEEEETTEEEEECCBBT-----TBSCCCCEEEEETTTTEEEEECCC--
T ss_pred CCcceEEEEeCCCCeEEEC---CCCCccccceeEEEECCEEEEECCCCC-----CCcEeeeEEEEeCCCCceEeCCCC--
Confidence 4678999999999999998 478999999999999999999999742 344678999999999999999654
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCC---ccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCC
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDY---YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 158 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~---~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~ 158 (473)
|.+|..|++++++++|||+||...... .++++++||+.+++|+.+++ +|.+|..|+++.++++|||+||....
T Consensus 137 -p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~~ 212 (306)
T 3ii7_A 137 -LTQRCSHGMVEANGLIYVCGGSLGNNVSGRVLNSCEVYDPATETWTELCP---MIEARKNHGLVFVKDKIFAVGGQNGL 212 (306)
T ss_dssp -SSCCBSCEEEEETTEEEEECCEESCTTTCEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCEETT
T ss_pred -cCCcceeEEEEECCEEEEECCCCCCCCcccccceEEEeCCCCCeEEECCC---ccchhhcceEEEECCEEEEEeCCCCC
Confidence 899999999999999999999876543 38999999999999999985 89999999999999999999998543
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeecc
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 236 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l 236 (473)
..++++++||+.+++|+.+.. .|.+|..|+++.+ +++|||+||.+. ...+++++.||+.+.+|..+..+
T Consensus 213 -~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~-~~~~~~~~~yd~~~~~W~~~~~~ 281 (306)
T 3ii7_A 213 -GGLDNVEYYDIKLNEWKMVSP---MPWKGVTVKCAAV----GSIVYVLAGFQG-VGRLGHILEYNTETDKWVANSKV 281 (306)
T ss_dssp -EEBCCEEEEETTTTEEEECCC---CSCCBSCCEEEEE----TTEEEEEECBCS-SSBCCEEEEEETTTTEEEEEEEE
T ss_pred -CCCceEEEeeCCCCcEEECCC---CCCCccceeEEEE----CCEEEEEeCcCC-CeeeeeEEEEcCCCCeEEeCCCc
Confidence 568899999999999999965 5789999988877 789999999876 45788999999999999876543
No 9
>1zgk_A Kelch-like ECH-associated protein 1; beta-propeller, kelch repeat motif, protein binding; HET: MSE; 1.35A {Homo sapiens} SCOP: b.68.11.1 PDB: 2flu_X 1u6d_X 1x2j_A 1x2r_A 2dyh_A 2z32_A 3ade_A
Probab=100.00 E-value=5.9e-33 Score=275.75 Aligned_cols=209 Identities=15% Similarity=0.260 Sum_probs=186.4
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.++++++||+.+++|+++ .++|.+|.+|++++++++|||+||... ...++++++||+.+++|+.++++
T Consensus 88 ~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~yd~~~~~W~~~~~~--- 155 (308)
T 1zgk_A 88 DSSALDCYNPMTNQWSPC---APMSVPRNRIGVGVIDGHIYAVGGSHG------CIHHNSVERYEPERDEWHLVAPM--- 155 (308)
T ss_dssp ECCCEEEEETTTTEEEEC---CCCSSCCBTCEEEEETTEEEEECCEET------TEECCCEEEEETTTTEEEECCCC---
T ss_pred ecceEEEECCCCCeEeEC---CCCCcCccccEEEEECCEEEEEcCCCC------CcccccEEEECCCCCeEeECCCC---
Confidence 468999999999999998 478999999999999999999999642 34678999999999999999654
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
|.+|..|++++++++|||+||.++.. .++++++||+.+++|+.++. +|.+|..|+++.++++|||+||... ...+
T Consensus 156 p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~ 230 (308)
T 1zgk_A 156 LTRRIGVGVAVLNRLLYAVGGFDGTN-RLNSAECYYPERNEWRMITA---MNTIRSGAGVCVLHNCIYAAGGYDG-QDQL 230 (308)
T ss_dssp SSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEECCC---CSSCCBSCEEEEETTEEEEECCBCS-SSBC
T ss_pred CccccceEEEEECCEEEEEeCCCCCC-cCceEEEEeCCCCeEeeCCC---CCCccccceEEEECCEEEEEeCCCC-CCcc
Confidence 89999999999999999999998765 58999999999999999985 8999999999999999999999853 4568
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeecc
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 236 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l 236 (473)
+++++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+. ...+++++.||+.+.+|..+..+
T Consensus 231 ~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~-~~~~~~v~~yd~~~~~W~~~~~~ 296 (308)
T 1zgk_A 231 NSVERYDVETETWTFVAP---MKHRRSALGITVH----QGRIYVLGGYDG-HTFLDSVECYDPDTDTWSEVTRM 296 (308)
T ss_dssp CCEEEEETTTTEEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCS-SCBCCEEEEEETTTTEEEEEEEC
T ss_pred ceEEEEeCCCCcEEECCC---CCCCccceEEEEE----CCEEEEEcCcCC-CcccceEEEEcCCCCEEeecCCC
Confidence 999999999999999874 5788999988876 789999999876 45789999999999999877543
No 10
>2xn4_A Kelch-like protein 2; structural protein, cytoskeleton; 1.99A {Homo sapiens}
Probab=100.00 E-value=6.8e-33 Score=273.80 Aligned_cols=208 Identities=18% Similarity=0.263 Sum_probs=184.1
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.++++++||+.+++|+.+ +++|.+|.+|++++++++|||+||... ...++++|+||+.+++|+.++++
T Consensus 75 ~~~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~~--- 142 (302)
T 2xn4_A 75 RVRTVDSYDPVKDQWTSV---ANMRDRRSTLGAAVLNGLLYAVGGFDG------STGLSSVEAYNIKSNEWFHVAPM--- 142 (302)
T ss_dssp BCCCEEEEETTTTEEEEE---CCCSSCCBSCEEEEETTEEEEEEEECS------SCEEEEEEEEETTTTEEEEECCC---
T ss_pred cccceEEECCCCCceeeC---CCCCccccceEEEEECCEEEEEcCCCC------CccCceEEEEeCCCCeEeecCCC---
Confidence 578999999999999998 478999999999999999999999742 34578999999999999999655
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCC-CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHD-YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~-~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
|.+|..|++++++++|||+||.+... ..++++++||+.+++|+.++. +|.+|..|+++.++++|||+||.. ....
T Consensus 143 p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~-~~~~ 218 (302)
T 2xn4_A 143 NTRRSSVGVGVVGGLLYAVGGYDVASRQCLSTVECYNATTNEWTYIAE---MSTRRSGAGVGVLNNLLYAVGGHD-GPLV 218 (302)
T ss_dssp SSCCBSCEEEEETTEEEEECCEETTTTEECCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBS-SSSB
T ss_pred CCcccCceEEEECCEEEEEeCCCCCCCccccEEEEEeCCCCcEEECCC---CccccccccEEEECCEEEEECCCC-CCcc
Confidence 89999999999999999999987654 468999999999999999975 899999999999999999999984 3456
Q ss_pred cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeee
Q 011998 162 YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLE 234 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~ 234 (473)
.+++++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+. ...+++++.||+.+.+|..+.
T Consensus 219 ~~~~~~yd~~~~~W~~~~~---~~~~r~~~~~~~~----~~~i~v~GG~~~-~~~~~~v~~yd~~~~~W~~~~ 283 (302)
T 2xn4_A 219 RKSVEVYDPTTNAWRQVAD---MNMCRRNAGVCAV----NGLLYVVGGDDG-SCNLASVEYYNPTTDKWTVVS 283 (302)
T ss_dssp CCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEECCBCS-SSBCCCEEEEETTTTEEEECS
T ss_pred cceEEEEeCCCCCEeeCCC---CCCccccCeEEEE----CCEEEEECCcCC-CcccccEEEEcCCCCeEEECC
Confidence 7899999999999999975 5778988887776 799999999876 356899999999999998654
No 11
>2woz_A Kelch repeat and BTB domain-containing protein 10; protein binding, invasion and metastasis, UBL conjugation pathway, UBL protein folding; 2.00A {Rattus norvegicus}
Probab=100.00 E-value=3.8e-33 Score=278.17 Aligned_cols=208 Identities=19% Similarity=0.314 Sum_probs=183.5
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+++++||+.+++|+.+ +++|.+|.+|++++++++|||+||... .....++++|+||+.+++|+++.++ |.
T Consensus 78 ~~~~~~d~~~~~W~~~---~~~p~~r~~~~~~~~~~~iyv~GG~~~----~~~~~~~~~~~yd~~~~~W~~~~~~---p~ 147 (318)
T 2woz_A 78 SYFFQLDNVSSEWVGL---PPLPSARCLFGLGEVDDKIYVVAGKDL----QTEASLDSVLCYDPVAAKWSEVKNL---PI 147 (318)
T ss_dssp BEEEEEETTTTEEEEC---SCBSSCBCSCEEEEETTEEEEEEEEBT----TTCCEEEEEEEEETTTTEEEEECCC---SS
T ss_pred ccEEEEeCCCCcEEEC---CCCCccccccceEEECCEEEEEcCccC----CCCcccceEEEEeCCCCCEeECCCC---CC
Confidence 3599999999999998 588999999999999999999999742 1345689999999999999999654 89
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcccc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~nd 164 (473)
+|.+|++++++++|||+||.......++++++||+.+++|+.+++ +|.+|..|+++.++++|||+||... ....++
T Consensus 148 ~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~~~~iyv~GG~~~-~~~~~~ 223 (318)
T 2woz_A 148 KVYGHNVISHNGMIYCLGGKTDDKKCTNRVFIYNPKKGDWKDLAP---MKTPRSMFGVAIHKGKIVIAGGVTE-DGLSAS 223 (318)
T ss_dssp CEESCEEEEETTEEEEECCEESSSCBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEEEEEET-TEEEEE
T ss_pred cccccEEEEECCEEEEEcCCCCCCCccceEEEEcCCCCEEEECCC---CCCCcccceEEEECCEEEEEcCcCC-CCccce
Confidence 999999999999999999987666679999999999999999985 8999999999999999999999854 346789
Q ss_pred EEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC--------CCccCcEEEEEccccceeee
Q 011998 165 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS--------LEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 165 v~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~--------~~~~~dv~~ld~~~~~w~~~ 233 (473)
+++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ...++++|.||+.+.+|.++
T Consensus 224 ~~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~ 293 (318)
T 2woz_A 224 VEAFDLKTNKWEVMTE---FPQERSSISLVSL----AGSLYAIGGFAMIQLESKEFAPTEVNDIWKYEDDKKEWAGM 293 (318)
T ss_dssp EEEEETTTCCEEECCC---CSSCCBSCEEEEE----TTEEEEECCBCCBC----CCBCCBCCCEEEEETTTTEEEEE
T ss_pred EEEEECCCCeEEECCC---CCCcccceEEEEE----CCEEEEECCeeccCCCCceeccceeeeEEEEeCCCCEehhh
Confidence 9999999999999865 5788999988876 7899999998653 24579999999999999875
No 12
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=100.00 E-value=1.2e-32 Score=278.54 Aligned_cols=244 Identities=20% Similarity=0.267 Sum_probs=188.3
Q ss_pred CcEEEEECC--CCeEEecccCCCCC-CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 5 RDLHILDTS--SHTWISPSVRGEGP-EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~--t~~W~~l~~~~~~P-~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
+++++||+. +++|+.+ +++| .+|.+|++++++++||||||..... ......++++|+||+.+++|++++++.
T Consensus 31 ~~~~~~d~~~~~~~W~~~---~~~p~~~R~~~~~~~~~~~lyv~GG~~~~~-~~~~~~~~~v~~yd~~~~~W~~~~~~~- 105 (357)
T 2uvk_A 31 TAWYKLDTQAKDKKWTAL---AAFPGGPRDQATSAFIDGNLYVFGGIGKNS-EGLTQVFNDVHKYNPKTNSWVKLMSHA- 105 (357)
T ss_dssp TCEEEEETTSSSCCEEEC---CCCTTCCCBSCEEEEETTEEEEECCEEECT-TSCEEECCCEEEEETTTTEEEECSCCC-
T ss_pred CeEEEEccccCCCCeeEC---CCCCCCcCccceEEEECCEEEEEcCCCCCC-CccceeeccEEEEeCCCCcEEECCCCC-
Confidence 589999998 4999998 4778 8999999999999999999972210 123567899999999999999998763
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCC---------------------------------CccceEEEEECCCCCEEEee
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHD---------------------------------YYLSDVHILDTDTLTWKELN 128 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~---------------------------------~~~ndv~~yD~~t~~W~~l~ 128 (473)
|.+|.+|++++++++|||+||.+... .+++++++||+.+++|+.+.
T Consensus 106 -p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~ 184 (357)
T 2uvk_A 106 -PMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKAEDYFFNKFLLSFDPSTQQWSYAG 184 (357)
T ss_dssp -SSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCGGGGCCCCEEEEEETTTTEEEEEE
T ss_pred -CcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccccccCCcccEEEEeCCCCcEEECC
Confidence 69999999999999999999986432 25689999999999999997
Q ss_pred CCCCCCCCc-ceeEEEEECCEEEEEecccCCCCccccEEEEeC--CCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEE
Q 011998 129 TSGMVLSPR-AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDV--DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLV 205 (473)
Q Consensus 129 ~~g~~p~~R-~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~--~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~ 205 (473)
+ +|.+| .+|+++.++++||||||........+++++||+ .+++|+.+..+ ..|..|..|+++.+ +++||
T Consensus 185 ~---~p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~-~~~~~~~~~~~~~~----~~~iy 256 (357)
T 2uvk_A 185 E---SPWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV-SSPDGVAGGFAGIS----NDSLI 256 (357)
T ss_dssp E---CSSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-STTTCCBSCEEEEE----TTEEE
T ss_pred C---CCCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-CCCcccccceEEEE----CCEEE
Confidence 6 77665 459999999999999998655567889999987 89999999775 33555667777766 78999
Q ss_pred EEcccCCC----------------CCccCcEEEEEccccceeeeeccchhhhccccccccccccCCCcceEEEcceeccc
Q 011998 206 FIGGCNKS----------------LEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVH 269 (473)
Q Consensus 206 v~GG~~~~----------------~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~ 269 (473)
|+||.+.. ...++++++||+.+.+|..+..++ .++..+..+.+
T Consensus 257 v~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~~p--------------~~r~~~~~~~~------- 315 (357)
T 2uvk_A 257 FAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGELS--------------QGRAYGVSLPW------- 315 (357)
T ss_dssp EECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEECS--------------SCCBSSEEEEE-------
T ss_pred EEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCCCC--------------CCcccceeEEe-------
Confidence 99997532 234578999999999998764322 23333333333
Q ss_pred CCccEEEECCccccc
Q 011998 270 QPTPLLSYGEPRRNN 284 (473)
Q Consensus 270 ~~~~ili~GG~~~~~ 284 (473)
+++|+|+||.+...
T Consensus 316 -~~~i~v~GG~~~~~ 329 (357)
T 2uvk_A 316 -NNSLLIIGGETAGG 329 (357)
T ss_dssp -TTEEEEEEEECGGG
T ss_pred -CCEEEEEeeeCCCC
Confidence 34599999976544
No 13
>2vpj_A Kelch-like protein 12; adaptor protein, WNT signaling pathway, protein-binding, UBI degradation, UBL conjugation pathway, CUL3, kelch repeat; 1.85A {Homo sapiens}
Probab=100.00 E-value=2.7e-32 Score=269.13 Aligned_cols=210 Identities=19% Similarity=0.313 Sum_probs=186.3
Q ss_pred CCcCcEEEEECCCCe---EEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec
Q 011998 2 NPLRDLHILDTSSHT---WISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 78 (473)
Q Consensus 2 ~~l~dv~~yD~~t~~---W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 78 (473)
..++++++||+.+++ |+.+ +++|.+|.+|+++.++++|||+||... ...++++++||+.+++|+.++.
T Consensus 75 ~~~~~~~~~d~~~~~~~~W~~~---~~~p~~r~~~~~~~~~~~lyv~GG~~~------~~~~~~~~~~d~~~~~W~~~~~ 145 (301)
T 2vpj_A 75 SRLSSVECLDYTADEDGVWYSV---APMNVRRGLAGATTLGDMIYVSGGFDG------SRRHTSMERYDPNIDQWSMLGD 145 (301)
T ss_dssp CBCCCEEEEETTCCTTCCCEEE---CCCSSCCBSCEEEEETTEEEEECCBCS------SCBCCEEEEEETTTTEEEEEEE
T ss_pred ccCceEEEEECCCCCCCeeEEC---CCCCCCccceeEEEECCEEEEEcccCC------CcccceEEEEcCCCCeEEECCC
Confidence 357899999999999 9998 588999999999999999999999742 2347899999999999999976
Q ss_pred CCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCC
Q 011998 79 SGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDS 158 (473)
Q Consensus 79 ~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~ 158 (473)
+ |.+|..|++++++++|||+||.++.. .++++++||+.+++|+.++. +|.+|..|+++.++++|||+||...
T Consensus 146 ~---p~~r~~~~~~~~~~~iyv~GG~~~~~-~~~~~~~~d~~~~~W~~~~~---~p~~r~~~~~~~~~~~i~v~GG~~~- 217 (301)
T 2vpj_A 146 M---QTAREGAGLVVASGVIYCLGGYDGLN-ILNSVEKYDPHTGHWTNVTP---MATKRSGAGVALLNDHIYVVGGFDG- 217 (301)
T ss_dssp C---SSCCBSCEEEEETTEEEEECCBCSSC-BCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEETTEEEEECCBCS-
T ss_pred C---CCCcccceEEEECCEEEEECCCCCCc-ccceEEEEeCCCCcEEeCCC---CCcccccceEEEECCEEEEEeCCCC-
Confidence 5 89999999999999999999987764 78999999999999999975 8999999999999999999999854
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeecc
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEKL 236 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~l 236 (473)
....+++++||+++++|+.+.. .|.+|..|+++.+ +++|||+||.+.. ..+++++.||..+.+|..+..+
T Consensus 218 ~~~~~~v~~yd~~~~~W~~~~~---~p~~r~~~~~~~~----~~~i~v~GG~~~~-~~~~~v~~yd~~~~~W~~~~~~ 287 (301)
T 2vpj_A 218 TAHLSSVEAYNIRTDSWTTVTS---MTTPRCYVGATVL----RGRLYAIAGYDGN-SLLSSIECYDPIIDSWEVVTSM 287 (301)
T ss_dssp SSBCCCEEEEETTTTEEEEECC---CSSCCBSCEEEEE----TTEEEEECCBCSS-SBEEEEEEEETTTTEEEEEEEE
T ss_pred CcccceEEEEeCCCCcEEECCC---CCCcccceeEEEE----CCEEEEEcCcCCC-cccccEEEEcCCCCeEEEcCCC
Confidence 3458999999999999999975 5788999988876 7899999998763 5779999999999999877544
No 14
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=100.00 E-value=8.4e-32 Score=297.28 Aligned_cols=247 Identities=15% Similarity=0.188 Sum_probs=198.9
Q ss_pred CcCcEEEEECCCCeEEecc-c--CCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEee
Q 011998 3 PLRDLHILDTSSHTWISPS-V--RGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 77 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~-~--~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 77 (473)
.++++++||+.+++|+.+. . .+.+|.+|.+|+++++ +++|||+||.... ...++++|+||+.+++|+.+.
T Consensus 410 ~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~lyv~GG~~~~-----~~~~~dv~~yd~~t~~W~~~~ 484 (695)
T 2zwa_A 410 RVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQLLLIGGRKAP-----HQGLSDNWIFDMKTREWSMIK 484 (695)
T ss_dssp BCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEEEEECCBSST-----TCBCCCCEEEETTTTEEEECC
T ss_pred CcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEEEEEcCCCCC-----CCccccEEEEeCCCCcEEECC
Confidence 5789999999999999986 2 2458999999999999 9999999997432 236789999999999999996
Q ss_pred cCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEEC---CEEEEEe
Q 011998 78 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG---KNLFVFG 153 (473)
Q Consensus 78 ~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~---~~LyV~G 153 (473)
.+ |.+|.+|+++++ +++||||||.+... ++++||+.+++|+.+++.+.+|.+|++|++++++ ++|||+|
T Consensus 485 ~~---p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~~~~~g~~p~~r~~~~a~v~~~~~~~iyv~G 557 (695)
T 2zwa_A 485 SL---SHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKDVTPKDEFFQNSLVSAGLEFDPVSKQGIILG 557 (695)
T ss_dssp CC---SBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEECCCSSGGGGSCCBSCEEEEETTTTEEEEEC
T ss_pred CC---CCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEEccCCCCCCCcccceeEEEEeCCCCEEEEEC
Confidence 54 899999999997 99999999987664 9999999999999999877799999999988877 8899999
Q ss_pred cccCCC-CccccEEEEeCCCCc------EEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCC--CccCcEEEEE
Q 011998 154 GFTDSQ-NLYDDLYMIDVDSGL------WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL--EALDDMYYLY 224 (473)
Q Consensus 154 G~~~~~-~~~ndv~~yd~~t~~------W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~--~~~~dv~~ld 224 (473)
|....+ ..++++|+||+.+++ |+.+... ++.+|++|+++++ .+++|||+||.+... ...++++.||
T Consensus 558 G~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~--p~~~R~~~~~~~~---~~~~iyv~GG~~~~~~~~~~~~v~~yd 632 (695)
T 2zwa_A 558 GGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH--PLFQRYGSQIKYI---TPRKLLIVGGTSPSGLFDRTNSIISLD 632 (695)
T ss_dssp CBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC--GGGCCBSCEEEEE---ETTEEEEECCBCSSCCCCTTTSEEEEE
T ss_pred CcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC--CCCCcccceEEEe---CCCEEEEECCccCCCCCCCCCeEEEEE
Confidence 986544 678999999999999 8998773 3578999998877 239999999987644 3689999999
Q ss_pred ccccceeeeeccchhhhccccccccccccCCCcceEEEcceecccCCccEEEECCc
Q 011998 225 TGLVNERKLEKLSLRKQLKLKCQEQNFTPVHDRALVRIDTISDVHQPTPLLSYGEP 280 (473)
Q Consensus 225 ~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~~~~l~~~G~~~~~~~~~~ili~GG~ 280 (473)
+.+..|..+. ++.. . .. .+.| .+.|+++....+++|+|+||-
T Consensus 633 ~~t~~W~~~~-~p~~--~----~~-~~~p------~~~gh~~~~~~~g~i~v~GGg 674 (695)
T 2zwa_A 633 PLSETLTSIP-ISRR--I----WE-DHSL------MLAGFSLVSTSMGTIHIIGGG 674 (695)
T ss_dssp TTTTEEEECC-CCHH--H----HH-HSCC------CCSSCEEECC---CEEEECCE
T ss_pred CCCCeEEEee-cccc--c----cC-CCCc------cceeeeEEEeCCCEEEEEeCC
Confidence 9999998422 1110 0 00 0111 234666666666689999994
No 15
>2uvk_A YJHT; unknown function, hypothetical protein, sialic acid metabolism, kelch repeat, beta-propeller; HET: MSE; 1.50A {Escherichia coli}
Probab=99.97 E-value=1.7e-30 Score=262.70 Aligned_cols=220 Identities=18% Similarity=0.202 Sum_probs=172.8
Q ss_pred CcCcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCC----------------------------C
Q 011998 3 PLRDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSN----------------------------T 54 (473)
Q Consensus 3 ~l~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~----------------------------~ 54 (473)
.++++++||+.+++|+++... .|.+|.+|++++++++|||+||...... .
T Consensus 84 ~~~~v~~yd~~~~~W~~~~~~--~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (357)
T 2uvk_A 84 VFNDVHKYNPKTNSWVKLMSH--APMGMAGHVTFVHNGKAYVTGGVNQNIFNGYFEDLNEAGKDSTAIDKINAHYFDKKA 161 (357)
T ss_dssp ECCCEEEEETTTTEEEECSCC--CSSCCSSEEEEEETTEEEEEECCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHSSCG
T ss_pred eeccEEEEeCCCCcEEECCCC--CCcccccceEEEECCEEEEEeCcCCCcCcccccchhhcCCcccchhhhhhhhccccc
Confidence 478999999999999998532 1599999999999999999999732100 0
Q ss_pred CCceeeCeEEEEECCCCeEEEeecCCCCCCCcee-eEEEEECCEEEEEeCCCCCCCccceEEEEEC--CCCCEEEeeCCC
Q 011998 55 NDEVYYNDLYILNTETFVWKRATTSGNPPSARDS-HTCSSWKNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSG 131 (473)
Q Consensus 55 ~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~-hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~--~t~~W~~l~~~g 131 (473)
.....++++++||+.+++|+.+..+ |.+|.. |++++++++||||||.+.....++++++||+ .+++|+.++..
T Consensus 162 ~~~~~~~~v~~yd~~~~~W~~~~~~---p~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~v~~~d~d~~~~~W~~~~~~- 237 (357)
T 2uvk_A 162 EDYFFNKFLLSFDPSTQQWSYAGES---PWYGTAGAAVVNKGDKTWLINGEAKPGLRTDAVFELDFTGNNLKWNKLAPV- 237 (357)
T ss_dssp GGGCCCCEEEEEETTTTEEEEEEEC---SSCCCBSCEEEEETTEEEEECCEEETTEECCCEEEEECC---CEEEECCCS-
T ss_pred cccCCcccEEEEeCCCCcEEECCCC---CCCCcccccEEEECCEEEEEeeecCCCcccCceEEEEecCCCCcEEecCCC-
Confidence 0012468999999999999999765 665554 9999999999999998776667899999987 99999999762
Q ss_pred CCCCCcceeEEEEECCEEEEEecccCC----------------CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEE
Q 011998 132 MVLSPRAGHSTVAFGKNLFVFGGFTDS----------------QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 195 (473)
Q Consensus 132 ~~p~~R~~hs~~~~~~~LyV~GG~~~~----------------~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~ 195 (473)
..|.+|.+|+++.++++|||+||.... ...++++++||+++++|+++.. .|.+|..|+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~iyv~GG~~~~~~~~~~~~g~~~~~~~~~~~~~~~~yd~~~~~W~~~~~---~p~~r~~~~~~~ 314 (357)
T 2uvk_A 238 SSPDGVAGGFAGISNDSLIFAGGAGFKGSRENYQNGKNYAHEGLKKSYSTDIHLWHNGKWDKSGE---LSQGRAYGVSLP 314 (357)
T ss_dssp STTTCCBSCEEEEETTEEEEECCEECTTHHHHHHTTCSSTTTTCCCEECCEEEECC---CEEEEE---CSSCCBSSEEEE
T ss_pred CCCcccccceEEEECCEEEEEcCccccCCcccccccceeccccccceeeEEEEecCCCceeeCCC---CCCCcccceeEE
Confidence 124446788899999999999997432 1235789999999999999976 578899988877
Q ss_pred eccccCCEEEEEcccCCCCCccCcEEEEEccccceeeeec
Q 011998 196 LDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKLEK 235 (473)
Q Consensus 196 ~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~~~ 235 (473)
+ +++||||||.+.....++|++.|+....+|.+...
T Consensus 315 ~----~~~i~v~GG~~~~~~~~~~v~~l~~~~~~~~~~~~ 350 (357)
T 2uvk_A 315 W----NNSLLIIGGETAGGKAVTDSVLITVKDNKVTVQNL 350 (357)
T ss_dssp E----TTEEEEEEEECGGGCEEEEEEEEEC-CCSCEEEC-
T ss_pred e----CCEEEEEeeeCCCCCEeeeEEEEEEcCcEeEeeec
Confidence 6 79999999998877788999999999988876543
No 16
>2zwa_A Leucine carboxyl methyltransferase 2; HET: SAH CIT; 1.70A {Saccharomyces cerevisiae} PDB: 2zw9_A* 2zzk_A*
Probab=99.97 E-value=4.1e-29 Score=275.79 Aligned_cols=239 Identities=19% Similarity=0.246 Sum_probs=186.6
Q ss_pred CCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEee-c--CCCCCCCceeeEEEEE--CCEE
Q 011998 24 GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT-T--SGNPPSARDSHTCSSW--KNKI 98 (473)
Q Consensus 24 ~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~-~--~g~~P~~R~~hs~~~~--~~~I 98 (473)
+..|.+|++|+++ ++++|||+||.+. ..++++|+||+.+++|+.++ + .+.+|.+|.+|+++++ +++|
T Consensus 383 ~~~p~rr~g~~~~-~~~~iyv~GG~~~-------~~~~~v~~yd~~~~~W~~~~~~~p~~~~p~~R~~hs~~~~~~~~~l 454 (695)
T 2zwa_A 383 ECPINRKFGDVDV-AGNDVFYMGGSNP-------YRVNEILQLSIHYDKIDMKNIEVSSSEVPVARMCHTFTTISRNNQL 454 (695)
T ss_dssp CCTTCCBSCEEEE-CSSCEEEECCBSS-------SBCCCEEEEEECSSCEEEEECCCCCSCCCCCCBSCEEEEETTTTEE
T ss_pred CCCCCCceeEEEE-ECCEEEEECCCCC-------CCcCcEEEEECCCCeEEEeccCCCCCCCCccccceEEEEEccCCEE
Confidence 4567777776655 8999999999742 45789999999999999998 4 2457999999999999 9999
Q ss_pred EEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 99 IVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 99 yV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
||+||.+.....++++|+||+.+++|+.++. +|.+|++|+++.+ +++||||||..... ++++||+.+++|+.
T Consensus 455 yv~GG~~~~~~~~~dv~~yd~~t~~W~~~~~---~p~~R~~h~~~~~~~~~iyv~GG~~~~~----~v~~yd~~t~~W~~ 527 (695)
T 2zwa_A 455 LLIGGRKAPHQGLSDNWIFDMKTREWSMIKS---LSHTRFRHSACSLPDGNVLILGGVTEGP----AMLLYNVTEEIFKD 527 (695)
T ss_dssp EEECCBSSTTCBCCCCEEEETTTTEEEECCC---CSBCCBSCEEEECTTSCEEEECCBCSSC----SEEEEETTTTEEEE
T ss_pred EEEcCCCCCCCccccEEEEeCCCCcEEECCC---CCCCcccceEEEEcCCEEEEECCCCCCC----CEEEEECCCCceEE
Confidence 9999998776689999999999999999975 8999999999997 99999999985443 89999999999999
Q ss_pred EeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCC-CccCcEEEEEccccce------eeeeccchhhhccccccccc
Q 011998 178 VITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSL-EALDDMYYLYTGLVNE------RKLEKLSLRKQLKLKCQEQN 250 (473)
Q Consensus 178 v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~-~~~~dv~~ld~~~~~w------~~~~~l~~~~~l~~~~~~~~ 250 (473)
+...+..|.+|++|+++++. ...++|||+||..... ..++++|.||+.+..| ..+... .
T Consensus 528 ~~~~g~~p~~r~~~~a~v~~-~~~~~iyv~GG~~~~~~~~~~~v~~yd~~~~~w~~~~~W~~~~~~-------------p 593 (695)
T 2zwa_A 528 VTPKDEFFQNSLVSAGLEFD-PVSKQGIILGGGFMDQTTVSDKAIIFKYDAENATEPITVIKKLQH-------------P 593 (695)
T ss_dssp CCCSSGGGGSCCBSCEEEEE-TTTTEEEEECCBCTTSSCBCCEEEEEEECTTCSSCCEEEEEEEEC-------------G
T ss_pred ccCCCCCCCcccceeEEEEe-CCCCEEEEECCcCCCCCeeeCcEEEEEccCCccccceEEEEcCCC-------------C
Confidence 99877789999999977762 1138999999986554 6789999999999985 332210 0
Q ss_pred cccCCCcceEEEcceecccCCccEEEECCcccccccCCCCccceEeecc
Q 011998 251 FTPVHDRALVRIDTISDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVT 299 (473)
Q Consensus 251 ~~p~~~~~l~~~G~~~~~~~~~~ili~GG~~~~~~~~~~~~k~f~~~vs 299 (473)
+.++. ++.+...+++.|+++||.+..... ....+++..+..
T Consensus 594 ~~~R~-------~~~~~~~~~~~iyv~GG~~~~~~~-~~~~~v~~yd~~ 634 (695)
T 2zwa_A 594 LFQRY-------GSQIKYITPRKLLIVGGTSPSGLF-DRTNSIISLDPL 634 (695)
T ss_dssp GGCCB-------SCEEEEEETTEEEEECCBCSSCCC-CTTTSEEEEETT
T ss_pred CCCcc-------cceEEEeCCCEEEEECCccCCCCC-CCCCeEEEEECC
Confidence 12333 344433443569999998654321 123455544443
No 17
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.93 E-value=1.1e-25 Score=246.47 Aligned_cols=257 Identities=13% Similarity=0.130 Sum_probs=185.0
Q ss_pred cCcEEEEECCCCeEEecccCCCCCCcccce--EEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC
Q 011998 4 LRDLHILDTSSHTWISPSVRGEGPEAREGH--SAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 80 (473)
Q Consensus 4 l~dv~~yD~~t~~W~~l~~~~~~P~~R~~h--sa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 80 (473)
++++++||+.+++|+.+. .+|.+|..| ++++ .+++||++||... .++++||+.+++|++++.+
T Consensus 218 ~~~~~~yd~~t~~w~~~~---~~~~~~~~~~~~~~~~~~g~lyv~GG~~~----------~~v~~yd~~t~~W~~~~~~- 283 (656)
T 1k3i_A 218 ITLTSSWDPSTGIVSDRT---VTVTKHDMFCPGISMDGNGQIVVTGGNDA----------KKTSLYDSSSDSWIPGPDM- 283 (656)
T ss_dssp EEEEEEECTTTCCBCCCE---EEECSCCCSSCEEEECTTSCEEEECSSST----------TCEEEEEGGGTEEEECCCC-
T ss_pred eEEEEEEeCCCCcEEeCc---ccCCCCCCccccccCCCCCCEEEeCCCCC----------CceEEecCcCCceeECCCC-
Confidence 457999999999999884 456666544 3444 5799999999632 2799999999999999654
Q ss_pred CCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCC--CCCC----------------------
Q 011998 81 NPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG--MVLS---------------------- 135 (473)
Q Consensus 81 ~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g--~~p~---------------------- 135 (473)
|.+|.+|+++++ +++|||+||.......++++++||+.+++|+.++..+ .++.
T Consensus 284 --~~~R~~~s~~~~~dg~iyv~GG~~~~~~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~ 361 (656)
T 1k3i_A 284 --QVARGYQSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGS 361 (656)
T ss_dssp --SSCCSSCEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGC
T ss_pred --CccccccceEEecCCeEEEEeCcccCCcccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCc
Confidence 899999999999 9999999996444447899999999999999973211 0111
Q ss_pred -----------------------------------CcceeEEEE---ECCEEEEEecccC--CCCccc---cEEEEeCCC
Q 011998 136 -----------------------------------PRAGHSTVA---FGKNLFVFGGFTD--SQNLYD---DLYMIDVDS 172 (473)
Q Consensus 136 -----------------------------------~R~~hs~~~---~~~~LyV~GG~~~--~~~~~n---dv~~yd~~t 172 (473)
++..+++++ .+++|||+||... ....++ .+++||+.+
T Consensus 362 ~~~~~~~~~v~~yd~~~~~w~~~~~~~~~~~~~~~~~~~~~av~~~~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~ 441 (656)
T 1k3i_A 362 VFQAGPSTAMNWYYTSGSGDVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLGEPGT 441 (656)
T ss_dssp EEECCSSSEEEEEECSTTCEEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTS
T ss_pred EEEecCccceeeeecCCcceeecCCccccccccCCCCCCCceEeccCCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCC
Confidence 122345554 4799999999742 223344 799999999
Q ss_pred CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC-----CCccCcEEEEEccccceeeeeccchhhhcccccc
Q 011998 173 GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS-----LEALDDMYYLYTGLVNERKLEKLSLRKQLKLKCQ 247 (473)
Q Consensus 173 ~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~-----~~~~~dv~~ld~~~~~w~~~~~l~~~~~l~~~~~ 247 (473)
++|..+. .+..|.+|..|+++++ .+++|||+||.+.. ...++++++||..+.+|..+..+
T Consensus 442 ~~W~~~~-~~~mp~~R~~~~~~~l---~~g~i~v~GG~~~~~~~~~~~~~~~v~~ydp~t~~W~~~~~~----------- 506 (656)
T 1k3i_A 442 SPNTVFA-SNGLYFARTFHTSVVL---PDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPN----------- 506 (656)
T ss_dssp CCEEEEC-TTCCSSCCBSCEEEEC---TTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCC-----------
T ss_pred CCeeEEc-cCCCCCCcccCCeEEC---CCCCEEEECCcccCcCcCCCCcccceEEEcCCCCceeecCCC-----------
Confidence 9999986 2356889999988876 47899999997642 35678999999999998764322
Q ss_pred ccccccCCCcceEEEcce-ecccCCccEEEECCcccccccCCCCccceEeecccccCCCceE
Q 011998 248 EQNFTPVHDRALVRIDTI-SDVHQPTPLLSYGEPRRNNFPLNEGKKTFQAKVTESFPLGYTI 308 (473)
Q Consensus 248 ~~~~~p~~~~~l~~~G~~-~~~~~~~~ili~GG~~~~~~~~~~~~k~f~~~vs~i~~~~Y~i 308 (473)
+.+ +.+|+ +....+++||++||....... ...|.+ |+|.|+|..
T Consensus 507 ---~~~-------R~~hs~a~ll~dg~v~v~GG~~~~~~~----~~~~~~---e~~~Ppyl~ 551 (656)
T 1k3i_A 507 ---SIV-------RVYHSISLLLPDGRVFNGGGGLCGDCT----TNHFDA---QIFTPNYLY 551 (656)
T ss_dssp ---SSC-------CCTTEEEEECTTSCEEEEECCCCTTCS----CCCCEE---EEEECGGGB
T ss_pred ---CCc-------cccccHhhcCCCcEEEecCCCCCCCCC----CCeeEE---EEEeChhhc
Confidence 122 23333 233456679999995322211 122222 788888863
No 18
>1k3i_A Galactose oxidase precursor; blade beta propeller, prosequence form, precursor of copper enzyme., oxidoreductase; 1.40A {Fusarium SP} SCOP: b.1.18.2 b.18.1.1 b.69.1.1 PDB: 1gof_A 1gog_A 1goh_A 2eie_A 2jkx_A 2vz1_A 2vz3_A 2eic_A 2eib_A 1t2x_A 2eid_A 2wq8_A
Probab=99.91 E-value=6e-24 Score=232.79 Aligned_cols=241 Identities=15% Similarity=0.133 Sum_probs=169.6
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
++..||+.+++|..+. + .||..|+++++ +++||++||.............+++++||+.+++|+.+..+ |
T Consensus 167 ~~~~~dp~~~~W~~~~---~--~P~~~~~~av~~~~g~l~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~---~ 238 (656)
T 1k3i_A 167 SYTAPQPGLGRWGPTI---D--LPIVPAAAAIEPTSGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVT---V 238 (656)
T ss_dssp CCCCCCTTSCEEEEEE---E--CSSCCSEEEEETTTTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEE---E
T ss_pred ccccCCCCCCeeeeec---c--CCCCceeEEEEecCCEEEEEecccccccccCCCCeEEEEEEeCCCCcEEeCccc---C
Confidence 3556788899999874 3 34566777777 89999999975432111122345899999999999988765 5
Q ss_pred CCceeeE--EEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCC
Q 011998 84 SARDSHT--CSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQ 159 (473)
Q Consensus 84 ~~R~~hs--~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~ 159 (473)
.+|..|+ +++ .+++||++||.... ++++||+.+++|++++. ||.+|..|+++.+ +++|||+||..+..
T Consensus 239 ~~~~~~~~~~~~~~~g~lyv~GG~~~~-----~v~~yd~~t~~W~~~~~---~~~~R~~~s~~~~~dg~iyv~GG~~~~~ 310 (656)
T 1k3i_A 239 TKHDMFCPGISMDGNGQIVVTGGNDAK-----KTSLYDSSSDSWIPGPD---MQVARGYQSSATMSDGRVFTIGGSWSGG 310 (656)
T ss_dssp CSCCCSSCEEEECTTSCEEEECSSSTT-----CEEEEEGGGTEEEECCC---CSSCCSSCEEEECTTSCEEEECCCCCSS
T ss_pred CCCCCccccccCCCCCCEEEeCCCCCC-----ceEEecCcCCceeECCC---CCccccccceEEecCCeEEEEeCcccCC
Confidence 6665553 444 48999999997643 79999999999999975 9999999999999 99999999965555
Q ss_pred CccccEEEEeCCCCcEEEEeeCCC--CC----------------------------------------------------
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGE--GP---------------------------------------------------- 185 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~--~P---------------------------------------------------- 185 (473)
..++++++||+.+++|+.+...+. .+
T Consensus 311 ~~~~~~e~yd~~t~~W~~~~~~~~~p~~~~~~~~~~~~~~~iyv~Gg~~g~~~~~~~~~~v~~yd~~~~~w~~~~~~~~~ 390 (656)
T 1k3i_A 311 VFEKNGEVYSPSSKTWTSLPNAKVNPMLTADKQGLYRSDNHAWLFGWKKGSVFQAGPSTAMNWYYTSGSGDVKSAGKRQS 390 (656)
T ss_dssp SCCCCEEEEETTTTEEEEETTSCSGGGCCCCTTGGGTTTCSCCEEECGGGCEEECCSSSEEEEEECSTTCEEEEEEECEE
T ss_pred cccccceEeCCCCCcceeCCCccccccccccccceeecCCceEEEECCCCcEEEecCccceeeeecCCcceeecCCcccc
Confidence 678999999999999999732110 00
Q ss_pred -----CCcceeeEEEeccccCCEEEEEcccCC--CCCccC---cEEEEEccccceeeeeccchhhhccccccccccccCC
Q 011998 186 -----SARFSVAGDCLDPLKGGVLVFIGGCNK--SLEALD---DMYYLYTGLVNERKLEKLSLRKQLKLKCQEQNFTPVH 255 (473)
Q Consensus 186 -----~~R~~~~a~~~~~~~~~~l~v~GG~~~--~~~~~~---dv~~ld~~~~~w~~~~~l~~~~~l~~~~~~~~~~p~~ 255 (473)
.++..+++++++ ..+++||++||... ....++ ++++||.....|..+.. ...+.+
T Consensus 391 ~~~~~~~~~~~~av~~~-~~~~~i~v~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~~~~~------------~~mp~~-- 455 (656)
T 1k3i_A 391 NRGVAPDAMCGNAVMYD-AVKGKILTFGGSPDYQDSDATTNAHIITLGEPGTSPNTVFAS------------NGLYFA-- 455 (656)
T ss_dssp TTEECCCCBTCEEEEEE-TTTTEEEEECCBSSSSSSBCCCCEEEEECCSTTSCCEEEECT------------TCCSSC--
T ss_pred ccccCCCCCCCceEecc-CCCCeEEEEeCCCCCCCCCcCCcceEEEcCCCCCCCeeEEcc------------CCCCCC--
Confidence 012234444432 23789999999753 223445 78888888888875430 011111
Q ss_pred CcceEEEcceecccCCccEEEECCccc
Q 011998 256 DRALVRIDTISDVHQPTPLLSYGEPRR 282 (473)
Q Consensus 256 ~~~l~~~G~~~~~~~~~~ili~GG~~~ 282 (473)
+.++.+....+++|||+||...
T Consensus 456 -----R~~~~~~~l~~g~i~v~GG~~~ 477 (656)
T 1k3i_A 456 -----RTFHTSVVLPDGSTFITGGQRR 477 (656)
T ss_dssp -----CBSCEEEECTTSCEEEECCBSB
T ss_pred -----cccCCeEECCCCCEEEECCccc
Confidence 3344555555667999999754
No 19
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.64 E-value=0.028 Score=53.37 Aligned_cols=161 Identities=13% Similarity=0.075 Sum_probs=103.5
Q ss_pred cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCC
Q 011998 29 AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHD 108 (473)
Q Consensus 29 ~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~ 108 (473)
.-+-+.....++.+|+-.|... .+.+.++|+.+.+-..-... |..-++.+++..+++||+....
T Consensus 20 ~~ftqGL~~~~~~LyestG~~g---------~S~v~~vD~~tgkv~~~~~l---~~~~fgeGi~~~~~~ly~ltw~---- 83 (243)
T 3mbr_X 20 TAFTEGLFYLRGHLYESTGETG---------RSSVRKVDLETGRILQRAEV---PPPYFGAGIVAWRDRLIQLTWR---- 83 (243)
T ss_dssp TCCEEEEEEETTEEEEEECCTT---------SCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEESS----
T ss_pred ccccccEEEECCEEEEECCCCC---------CceEEEEECCCCCEEEEEeC---CCCcceeEEEEeCCEEEEEEee----
Confidence 3455677888999999999521 25789999999876554433 4455778888889999998643
Q ss_pred CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCc
Q 011998 109 YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSAR 188 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R 188 (473)
-+.+++||+.+.+-..- .+.+..+..++.-+++||+.-| .+.++.+|+++.+-..--..+..+.+-
T Consensus 84 --~~~v~v~D~~tl~~~~t-----i~~~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V~~~g~~~ 149 (243)
T 3mbr_X 84 --NHEGFVYDLATLTPRAR-----FRYPGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKVTAGGRPL 149 (243)
T ss_dssp --SSEEEEEETTTTEEEEE-----EECSSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEECEETTEEC
T ss_pred --CCEEEEEECCcCcEEEE-----EeCCCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEEccCCccc
Confidence 46799999988764432 2223456677766777988755 246999999987543222211112121
Q ss_pred cee-eEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 189 FSV-AGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 189 ~~~-~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
... -..+ .+++||+- ....+++.++|..+.+
T Consensus 150 ~~lNeLe~----~~G~lyan------vw~s~~I~vIDp~tG~ 181 (243)
T 3mbr_X 150 DNLNELEW----VNGELLAN------VWLTSRIARIDPASGK 181 (243)
T ss_dssp CCEEEEEE----ETTEEEEE------ETTTTEEEEECTTTCB
T ss_pred ccceeeEE----eCCEEEEE------ECCCCeEEEEECCCCC
Confidence 111 1112 26777743 1234688999988765
No 20
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=97.22 E-value=0.18 Score=49.09 Aligned_cols=188 Identities=14% Similarity=0.061 Sum_probs=111.8
Q ss_pred CcEEEEECCCCeEEecccC--CCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE-EeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVR--GEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~--~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~ 81 (473)
+.|..||+.+.++...-.. ...+.....+.++..++++|+.... .+.+.++|+.+.+-. .++. +
T Consensus 17 ~~l~~~d~~t~~~~~~i~~~~n~~~lg~~~~~i~~~~~~lyv~~~~-----------~~~v~viD~~t~~~~~~i~~-~- 83 (328)
T 3dsm_A 17 ATLSYYDPATCEVENEVFYRANGFKLGDVAQSMVIRDGIGWIVVNN-----------SHVIFAIDINTFKEVGRITG-F- 83 (328)
T ss_dssp BEEEEEETTTTEEECSHHHHHHSSCCBSCEEEEEEETTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC-C-
T ss_pred ceEEEEECCCCEEhhhhHhhhcCcccCccceEEEEECCEEEEEEcC-----------CCEEEEEECcccEEEEEcCC-C-
Confidence 5789999999998753210 0223344556777789999999763 257999999988763 3432 1
Q ss_pred CCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEE-eeCCCCCC-CCcceeEEEEECCEEEEEecccCC
Q 011998 82 PPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVL-SPRAGHSTVAFGKNLFVFGGFTDS 158 (473)
Q Consensus 82 ~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~-l~~~g~~p-~~R~~hs~~~~~~~LyV~GG~~~~ 158 (473)
.. -+.++. -++++||.... .+.+.++|+.+.+-.. ++. +... ....-+.++..+++|||..-.
T Consensus 84 -~~---p~~i~~~~~g~lyv~~~~------~~~v~~iD~~t~~~~~~i~~-g~~~~~~~~p~~i~~~~~~lyv~~~~--- 149 (328)
T 3dsm_A 84 -TS---PRYIHFLSDEKAYVTQIW------DYRIFIINPKTYEITGYIEC-PDMDMESGSTEQMVQYGKYVYVNCWS--- 149 (328)
T ss_dssp -SS---EEEEEEEETTEEEEEEBS------CSEEEEEETTTTEEEEEEEC-TTCCTTTCBCCCEEEETTEEEEEECT---
T ss_pred -CC---CcEEEEeCCCeEEEEECC------CCeEEEEECCCCeEEEEEEc-CCccccCCCcceEEEECCEEEEEcCC---
Confidence 12 233333 57899998642 3679999999987553 332 1100 000122334478889988420
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCc----cCcEEEEEccccc
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEA----LDDMYYLYTGLVN 229 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~----~~dv~~ld~~~~~ 229 (473)
..+.+.++|+.+++....-..+..| . ...++ .++++|+..-....... .+.++++|..+.+
T Consensus 150 --~~~~v~viD~~t~~~~~~i~~g~~p--~----~i~~~--~dG~l~v~~~~~~~~~~~~~~~~~v~~id~~t~~ 214 (328)
T 3dsm_A 150 --YQNRILKIDTETDKVVDELTIGIQP--T----SLVMD--KYNKMWTITDGGYEGSPYGYEAPSLYRIDAETFT 214 (328)
T ss_dssp --TCCEEEEEETTTTEEEEEEECSSCB--C----CCEEC--TTSEEEEEBCCBCTTCSSCBCCCEEEEEETTTTE
T ss_pred --CCCEEEEEECCCCeEEEEEEcCCCc--c----ceEEc--CCCCEEEEECCCccCCccccCCceEEEEECCCCe
Confidence 1356999999998765543333222 1 12222 36788777532211111 2679999987654
No 21
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=97.10 E-value=0.11 Score=49.93 Aligned_cols=158 Identities=10% Similarity=-0.007 Sum_probs=98.7
Q ss_pred cceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCc
Q 011998 31 EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 110 (473)
Q Consensus 31 ~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~ 110 (473)
+...+...++.+|+-.|... .+.+.++|+++.+-..-... +..-++.+++..+++||+....
T Consensus 44 ftqGL~~~~~~LyestG~~g---------~S~v~~vD~~Tgkv~~~~~l---~~~~FgeGit~~g~~ly~ltw~------ 105 (262)
T 3nol_A 44 FTEGFFYRNGYFYESTGLNG---------RSSIRKVDIESGKTLQQIEL---GKRYFGEGISDWKDKIVGLTWK------ 105 (262)
T ss_dssp EEEEEEEETTEEEEEEEETT---------EEEEEEECTTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEESS------
T ss_pred ccceEEEECCEEEEECCCCC---------CceEEEEECCCCcEEEEEec---CCccceeEEEEeCCEEEEEEee------
Confidence 34566667899999999521 24789999999876544333 3344667788889999998652
Q ss_pred cceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEE-EEeeCC-CCCCCc
Q 011998 111 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT-KVITTG-EGPSAR 188 (473)
Q Consensus 111 ~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~-~v~~~g-~~P~~R 188 (473)
-+.+++||+.+.+-..-- +.+-.+...+.-+++||+.-| .+.++.+|+++.+-. .+.... ..|..+
T Consensus 106 ~~~v~v~D~~t~~~~~ti-----~~~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~~~g~~~~~ 173 (262)
T 3nol_A 106 NGLGFVWNIRNLRQVRSF-----NYDGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVTAHGEELPE 173 (262)
T ss_dssp SSEEEEEETTTCCEEEEE-----ECSSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECEETTEECCC
T ss_pred CCEEEEEECccCcEEEEE-----ECCCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEeccCCccccc
Confidence 467999999988754322 223355666666667888644 256999999986533 333210 011111
Q ss_pred ceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 189 FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 189 ~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
.. -..+. +++||+- ....+++.++|..+.+
T Consensus 174 lN-ELe~~----~G~lyan------~w~~~~I~vIDp~tG~ 203 (262)
T 3nol_A 174 LN-ELEWV----DGEIFAN------VWQTNKIVRIDPETGK 203 (262)
T ss_dssp EE-EEEEE----TTEEEEE------ETTSSEEEEECTTTCB
T ss_pred cc-eeEEE----CCEEEEE------EccCCeEEEEECCCCc
Confidence 11 11222 6777752 2235689999988765
No 22
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=97.10 E-value=0.054 Score=52.10 Aligned_cols=156 Identities=10% Similarity=-0.087 Sum_probs=97.0
Q ss_pred cceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCc
Q 011998 31 EGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 110 (473)
Q Consensus 31 ~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~ 110 (473)
+.+.+...++.||+..|.. ..+.++|+++.+-..-. . +..-++..++..+++||+....
T Consensus 56 ftqGL~~~~~~Ly~stG~~-----------g~v~~iD~~Tgkv~~~~-l---~~~~FgeGit~~g~~Ly~ltw~------ 114 (268)
T 3nok_A 56 FTQGLVFHQGHFFESTGHQ-----------GTLRQLSLESAQPVWME-R---LGNIFAEGLASDGERLYQLTWT------ 114 (268)
T ss_dssp CEEEEEEETTEEEEEETTT-----------TEEEECCSSCSSCSEEE-E---CTTCCEEEEEECSSCEEEEESS------
T ss_pred ccceEEEECCEEEEEcCCC-----------CEEEEEECCCCcEEeEE-C---CCCcceeEEEEeCCEEEEEEcc------
Confidence 3456666789999999952 23889999988543322 2 3344667788889999998652
Q ss_pred cceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEE-EeeCCCCCCCcc
Q 011998 111 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK-VITTGEGPSARF 189 (473)
Q Consensus 111 ~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~-v~~~g~~P~~R~ 189 (473)
-+.+++||+.+.+-..-- +.+-.+..++.-+++||+.-| .+.++.+|+++.+-.. +... ..+.+-.
T Consensus 115 ~~~v~V~D~~Tl~~~~ti-----~~~~eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V~-~~g~~v~ 181 (268)
T 3nok_A 115 EGLLFTWSGMPPQRERTT-----RYSGEGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQVK-LRGQPVE 181 (268)
T ss_dssp SCEEEEEETTTTEEEEEE-----ECSSCCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEECE-ETTEECC
T ss_pred CCEEEEEECCcCcEEEEE-----eCCCceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEeC-CCCcccc
Confidence 467999999987654322 223345666777888998765 2469999999875433 3221 1111111
Q ss_pred eeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 190 SVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 190 ~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
....... .+++||+- ....+++.++|..+.+
T Consensus 182 ~lNeLe~---~dG~lyan------vw~s~~I~vIDp~TG~ 212 (268)
T 3nok_A 182 LINELEC---ANGVIYAN------IWHSSDVLEIDPATGT 212 (268)
T ss_dssp CEEEEEE---ETTEEEEE------ETTCSEEEEECTTTCB
T ss_pred cccccEE---eCCEEEEE------ECCCCeEEEEeCCCCc
Confidence 1111111 26677742 2234689999988765
No 23
>3mbr_X Glutamine cyclotransferase; beta-propeller; 1.44A {Xanthomonas campestris}
Probab=97.05 E-value=0.081 Score=50.16 Aligned_cols=171 Identities=16% Similarity=0.119 Sum_probs=106.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+.|.++|+.+++-.... .+|..-++..++..+++||+.... .+.+++||+.+.+-..-- +.
T Consensus 43 S~v~~vD~~tgkv~~~~---~l~~~~fgeGi~~~~~~ly~ltw~-----------~~~v~v~D~~tl~~~~ti-----~~ 103 (243)
T 3mbr_X 43 SSVRKVDLETGRILQRA---EVPPPYFGAGIVAWRDRLIQLTWR-----------NHEGFVYDLATLTPRARF-----RY 103 (243)
T ss_dssp CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------SSEEEEEETTTTEEEEEE-----EC
T ss_pred ceEEEEECCCCCEEEEE---eCCCCcceeEEEEeCCEEEEEEee-----------CCEEEEEECCcCcEEEEE-----eC
Confidence 47899999998776542 445566788889999999999763 368999999987644322 22
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEE-EeeCCCCCCCCcce-eEEEEECCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-ELNTSGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~-~l~~~g~~p~~R~~-hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
+..+.+++..+++||+.=| .+.++.+|+.+.+-. .++. +..+.+... --+...+++||+--- ..
T Consensus 104 ~~~Gwglt~dg~~L~vSdg-------s~~l~~iDp~t~~~~~~I~V-~~~g~~~~~lNeLe~~~G~lyanvw------~s 169 (243)
T 3mbr_X 104 PGEGWALTSDDSHLYMSDG-------TAVIRKLDPDTLQQVGSIKV-TAGGRPLDNLNELEWVNGELLANVW------LT 169 (243)
T ss_dssp SSCCCEEEECSSCEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEET------TT
T ss_pred CCCceEEeeCCCEEEEECC-------CCeEEEEeCCCCeEEEEEEE-ccCCcccccceeeEEeCCEEEEEEC------CC
Confidence 3356777777888888643 367999999998753 3332 112222111 223445888885421 24
Q ss_pred ccEEEEeCCCCcEEEEee-CCCCCC-------CcceeeEEEeccccCCEEEEEcc
Q 011998 163 DDLYMIDVDSGLWTKVIT-TGEGPS-------ARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~-~g~~P~-------~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
+++.+.|+++++=...-. .+..|. .-.-.-+..+++ ..++|||.|-
T Consensus 170 ~~I~vIDp~tG~V~~~idl~~l~~~~~~~~~~~~~vlNGIA~d~-~~~~lfVTGK 223 (243)
T 3mbr_X 170 SRIARIDPASGKVVAWIDLQALVPDADALTDSTNDVLNGIAFDA-EHDRLFVTGK 223 (243)
T ss_dssp TEEEEECTTTCBEEEEEECGGGSTTTTSCCCTTSSCEEEEEEET-TTTEEEEEET
T ss_pred CeEEEEECCCCCEEEEEECCcCccccccccCCcCCceEEEEEcC-CCCEEEEECC
Confidence 689999999986543322 211111 111223344432 3678888874
No 24
>3dsm_A Uncharacterized protein bacuni_02894; seven_blated beta propeller, structural genomics, PSI-2, Pro structure initiative; 1.90A {Bacteroides uniformis}
Probab=96.76 E-value=0.41 Score=46.45 Aligned_cols=184 Identities=13% Similarity=0.097 Sum_probs=102.8
Q ss_pred CcEEEEECCCCeEEe-cccCCCCCCcccceEEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWIS-PSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~-l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+.++|+.+.+-.. +. ... .-+.++. .++++|+.... .+.++++|+.+.+-...-..+..
T Consensus 64 ~~v~viD~~t~~~~~~i~---~~~---~p~~i~~~~~g~lyv~~~~-----------~~~v~~iD~~t~~~~~~i~~g~~ 126 (328)
T 3dsm_A 64 HVIFAIDINTFKEVGRIT---GFT---SPRYIHFLSDEKAYVTQIW-----------DYRIFIINPKTYEITGYIECPDM 126 (328)
T ss_dssp TEEEEEETTTCCEEEEEE---CCS---SEEEEEEEETTEEEEEEBS-----------CSEEEEEETTTTEEEEEEECTTC
T ss_pred CEEEEEECcccEEEEEcC---CCC---CCcEEEEeCCCeEEEEECC-----------CCeEEEEECCCCeEEEEEEcCCc
Confidence 468899998877643 31 122 2234444 67899998752 25799999999876532222220
Q ss_pred C-CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCC
Q 011998 83 P-SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQN 160 (473)
Q Consensus 83 P-~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~ 160 (473)
. ....-+.++..++++||..-. .-+.+.++|+.+.+....-..+. .| +.++. -++++|+.........
T Consensus 127 ~~~~~~p~~i~~~~~~lyv~~~~-----~~~~v~viD~~t~~~~~~i~~g~--~p---~~i~~~~dG~l~v~~~~~~~~~ 196 (328)
T 3dsm_A 127 DMESGSTEQMVQYGKYVYVNCWS-----YQNRILKIDTETDKVVDELTIGI--QP---TSLVMDKYNKMWTITDGGYEGS 196 (328)
T ss_dssp CTTTCBCCCEEEETTEEEEEECT-----TCCEEEEEETTTTEEEEEEECSS--CB---CCCEECTTSEEEEEBCCBCTTC
T ss_pred cccCCCcceEEEECCEEEEEcCC-----CCCEEEEEECCCCeEEEEEEcCC--Cc---cceEEcCCCCEEEEECCCccCC
Confidence 0 000123344478999998420 23679999999988654332121 12 22222 3577777653211111
Q ss_pred c----cccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 161 L----YDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 161 ~----~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
. .+.++++|+.+.+....-.. +... ......+.+ .++.||+..+ .++.+|..+.+
T Consensus 197 ~~~~~~~~v~~id~~t~~v~~~~~~---~~g~-~p~~la~~~-d~~~lyv~~~---------~v~~~d~~t~~ 255 (328)
T 3dsm_A 197 PYGYEAPSLYRIDAETFTVEKQFKF---KLGD-WPSEVQLNG-TRDTLYWINN---------DIWRMPVEADR 255 (328)
T ss_dssp SSCBCCCEEEEEETTTTEEEEEEEC---CTTC-CCEEEEECT-TSCEEEEESS---------SEEEEETTCSS
T ss_pred ccccCCceEEEEECCCCeEEEEEec---CCCC-CceeEEEec-CCCEEEEEcc---------EEEEEECCCCc
Confidence 1 36799999998876533222 1111 122333321 2577888643 68899987643
No 25
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=96.63 E-value=0.51 Score=45.18 Aligned_cols=159 Identities=13% Similarity=-0.022 Sum_probs=94.7
Q ss_pred ceEEEEEC-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCc
Q 011998 32 GHSAALVG-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYY 110 (473)
Q Consensus 32 ~hsa~~~~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~ 110 (473)
-|.+...+ +.+|+..|... .+.+.++|+.+++-..--.. +...+...++..+++||+... .
T Consensus 23 ~~Gl~~~~dg~Lyvstg~~~---------~s~v~~iD~~tg~v~~~i~l---~~~~fgeGi~~~g~~lyv~t~------~ 84 (266)
T 2iwa_A 23 TQGLVYAENDTLFESTGLYG---------RSSVRQVALQTGKVENIHKM---DDSYFGEGLTLLNEKLYQVVW------L 84 (266)
T ss_dssp EEEEEECSTTEEEEEECSTT---------TCEEEEEETTTCCEEEEEEC---CTTCCEEEEEEETTEEEEEET------T
T ss_pred cccEEEeCCCeEEEECCCCC---------CCEEEEEECCCCCEEEEEec---CCCcceEEEEEeCCEEEEEEe------c
Confidence 36666666 89999887411 25799999999875543333 233455677778999999854 2
Q ss_pred cceEEEEECCCCCEE-EeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcc
Q 011998 111 LSDVHILDTDTLTWK-ELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARF 189 (473)
Q Consensus 111 ~ndv~~yD~~t~~W~-~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~ 189 (473)
-+.+++||+.+.+=. .++. + +| .+...+.-++++|+.-| .+.++.+|+++.+=..--..+..+.+..
T Consensus 85 ~~~v~viD~~t~~v~~~i~~-g-~~---~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~Vg~~~~p~~ 152 (266)
T 2iwa_A 85 KNIGFIYDRRTLSNIKNFTH-Q-MK---DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNVKYNGHRVI 152 (266)
T ss_dssp CSEEEEEETTTTEEEEEEEC-C-SS---SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEECEETTEECC
T ss_pred CCEEEEEECCCCcEEEEEEC-C-CC---CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEECCCCcccc
Confidence 467999999887533 2332 1 22 23444444567888643 3579999999865333222221111111
Q ss_pred eeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 190 SVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 190 ~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
..-...+ .++++|+- ....+++.++|+.+.+
T Consensus 153 ~~nele~---~dg~lyvn------~~~~~~V~vID~~tg~ 183 (266)
T 2iwa_A 153 RLNELEY---INGEVWAN------IWQTDCIARISAKDGT 183 (266)
T ss_dssp CEEEEEE---ETTEEEEE------ETTSSEEEEEETTTCC
T ss_pred cceeEEE---ECCEEEEe------cCCCCeEEEEECCCCc
Confidence 1111112 15677754 2234689999998754
No 26
>3nol_A Glutamine cyclotransferase; beta-propeller, glutaminyl cyclase, pyrogl transferase; 1.70A {Zymomonas mobilis} PDB: 3nom_A
Probab=96.26 E-value=0.44 Score=45.59 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=102.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+.|.++|+.|.+-.... .++..-++..++..+++||+.... .+.+++||+.+.+-..-- +.
T Consensus 65 S~v~~vD~~Tgkv~~~~---~l~~~~FgeGit~~g~~ly~ltw~-----------~~~v~v~D~~t~~~~~ti-----~~ 125 (262)
T 3nol_A 65 SSIRKVDIESGKTLQQI---ELGKRYFGEGISDWKDKIVGLTWK-----------NGLGFVWNIRNLRQVRSF-----NY 125 (262)
T ss_dssp EEEEEECTTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEESS-----------SSEEEEEETTTCCEEEEE-----EC
T ss_pred ceEEEEECCCCcEEEEE---ecCCccceeEEEEeCCEEEEEEee-----------CCEEEEEECccCcEEEEE-----EC
Confidence 36889999998766432 334445677888899999999763 367999999987643221 22
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEE-EeeCCCCCCCCcce-eEEEEECCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-ELNTSGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~-~l~~~g~~p~~R~~-hs~~~~~~~LyV~GG~~~~~~~~ 162 (473)
+-.+.+++..++.||+.-| .+.++.+|+.+.+-. .++.. ....+... --+...+++||+-- + ..
T Consensus 126 ~~eG~glt~dg~~L~~SdG-------s~~i~~iDp~T~~v~~~I~V~-~~g~~~~~lNELe~~~G~lyan~-w-----~~ 191 (262)
T 3nol_A 126 DGEGWGLTHNDQYLIMSDG-------TPVLRFLDPESLTPVRTITVT-AHGEELPELNELEWVDGEIFANV-W-----QT 191 (262)
T ss_dssp SSCCCCEEECSSCEEECCS-------SSEEEEECTTTCSEEEEEECE-ETTEECCCEEEEEEETTEEEEEE-T-----TS
T ss_pred CCCceEEecCCCEEEEECC-------CCeEEEEcCCCCeEEEEEEec-cCCccccccceeEEECCEEEEEE-c-----cC
Confidence 2255666666778888533 367999999987743 33321 11111111 01334588888532 1 24
Q ss_pred ccEEEEeCCCCcEEEEeeC-CCCCC------CcceeeEEEeccccCCEEEEEcc
Q 011998 163 DDLYMIDVDSGLWTKVITT-GEGPS------ARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~-g~~P~------~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
++|.+.|+++++=...-.. +..|. .-...-+..+++ ..++|||.|-
T Consensus 192 ~~I~vIDp~tG~V~~~Id~~~L~~~~~~~~~~~~vlNGIA~dp-~~~~lfVTGK 244 (262)
T 3nol_A 192 NKIVRIDPETGKVTGIIDLNGILAEAGPLPSPIDVLNGIAWDK-EHHRLFVTGK 244 (262)
T ss_dssp SEEEEECTTTCBEEEEEECTTGGGGSCSCCSSCCCEEEEEEET-TTTEEEEEET
T ss_pred CeEEEEECCCCcEEEEEECCcCccccccccCcCCceEEEEEcC-CCCEEEEECC
Confidence 6899999999875443332 11111 111223444432 3678888874
No 27
>2iwa_A Glutamine cyclotransferase; pyroglutamate, acyltransferase, glutaminyl CYCL N-terminal cyclisation; HET: NAG; 1.6A {Carica papaya} PDB: 2faw_A*
Probab=95.43 E-value=1.9 Score=41.14 Aligned_cols=183 Identities=12% Similarity=0.014 Sum_probs=106.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+.+.++|+.+++=.... +.+...++..++..+++||+..-. .+.+++||+.+.+-..--+.+ .|
T Consensus 44 s~v~~iD~~tg~v~~~i---~l~~~~fgeGi~~~g~~lyv~t~~-----------~~~v~viD~~t~~v~~~i~~g-~~- 107 (266)
T 2iwa_A 44 SSVRQVALQTGKVENIH---KMDDSYFGEGLTLLNEKLYQVVWL-----------KNIGFIYDRRTLSNIKNFTHQ-MK- 107 (266)
T ss_dssp CEEEEEETTTCCEEEEE---ECCTTCCEEEEEEETTEEEEEETT-----------CSEEEEEETTTTEEEEEEECC-SS-
T ss_pred CEEEEEECCCCCEEEEE---ecCCCcceEEEEEeCCEEEEEEec-----------CCEEEEEECCCCcEEEEEECC-CC-
Confidence 57899999988765432 233344667788889999999763 357999999987543222222 22
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEE-EeeCCCCCCCC--cceeEEEEECCEEEEEecccCCCCc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWK-ELNTSGMVLSP--RAGHSTVAFGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~-~l~~~g~~p~~--R~~hs~~~~~~~LyV~GG~~~~~~~ 161 (473)
.+..++..++++|+.-| .+.++.+|+.+.+-. .++. +..+.+ +-. .+...+++||+--. .
T Consensus 108 --~g~glt~Dg~~l~vs~g-------s~~l~viD~~t~~v~~~I~V-g~~~~p~~~~n-ele~~dg~lyvn~~------~ 170 (266)
T 2iwa_A 108 --DGWGLATDGKILYGSDG-------TSILYEIDPHTFKLIKKHNV-KYNGHRVIRLN-ELEYINGEVWANIW------Q 170 (266)
T ss_dssp --SCCEEEECSSSEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEE-EEEEETTEEEEEET------T
T ss_pred --CeEEEEECCCEEEEECC-------CCeEEEEECCCCcEEEEEEE-CCCCcccccce-eEEEECCEEEEecC------C
Confidence 23445555778998643 468999999997743 3332 111122 222 23334788886532 2
Q ss_pred cccEEEEeCCCCcEEEEeeC-CCCC-------CCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 162 YDDLYMIDVDSGLWTKVITT-GEGP-------SARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 162 ~ndv~~yd~~t~~W~~v~~~-g~~P-------~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
.+++.+.|+.+++=...-.. +..+ .......+..++. .++++||.|+... .++.+++..
T Consensus 171 ~~~V~vID~~tg~V~~~I~~~g~~~~~~~~~~~~~~v~nGIa~~~-~~~~lfVTgk~~~------~v~~i~l~~ 237 (266)
T 2iwa_A 171 TDCIARISAKDGTLLGWILLPNLRKKLIDEGFRDIDVLNGIAWDQ-ENKRIFVTGKLWP------KLFEIKLHL 237 (266)
T ss_dssp SSEEEEEETTTCCEEEEEECHHHHHHHHHTTCTTCCCEEEEEEET-TTTEEEEEETTCS------EEEEEEEEE
T ss_pred CCeEEEEECCCCcEEEEEECCCcccccccccccccCceEEEEEcC-CCCEEEEECCCCC------eEEEEEEec
Confidence 46799999998754332221 1000 0011223333432 3578999887554 466666554
No 28
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=94.90 E-value=1 Score=43.78 Aligned_cols=174 Identities=14% Similarity=0.166 Sum_probs=94.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+.++|..+++-...-.. .. .-++++.. + ..||+.|+. -..+++||+.+.+.......+.
T Consensus 12 ~~v~v~d~~~~~~~~~~~~---~~--~~~~~~~s~dg~~l~~~~~~-----------d~~i~v~d~~~~~~~~~~~~~~- 74 (391)
T 1l0q_A 12 DNISVIDVTSNKVTATIPV---GS--NPMGAVISPDGTKVYVANAH-----------SNDVSIIDTATNNVIATVPAGS- 74 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC---SS--SEEEEEECTTSSEEEEEEGG-----------GTEEEEEETTTTEEEEEEECSS-
T ss_pred CEEEEEECCCCeEEEEeec---CC--CcceEEECCCCCEEEEECCC-----------CCeEEEEECCCCeEEEEEECCC-
Confidence 4688999988866543211 11 11233332 2 467777763 2468999999887654433211
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-C-CEEEEEecccCC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFTDS 158 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~-~~LyV~GG~~~~ 158 (473)
.-.+++.. +..||+.|..+ ..+++||+.+.+....-. ....-.+++.. + ..||+.++..
T Consensus 75 ----~v~~~~~spdg~~l~~~~~~~------~~v~v~d~~~~~~~~~~~-----~~~~~~~~~~s~dg~~l~~~~~~~-- 137 (391)
T 1l0q_A 75 ----SPQGVAVSPDGKQVYVTNMAS------STLSVIDTTSNTVAGTVK-----TGKSPLGLALSPDGKKLYVTNNGD-- 137 (391)
T ss_dssp ----SEEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSSEEEEEECTTSSEEEEEETTT--
T ss_pred ----CccceEECCCCCEEEEEECCC------CEEEEEECCCCeEEEEEe-----CCCCcceEEECCCCCEEEEEeCCC--
Confidence 22233332 34566665432 568999999887654432 11222333333 2 3476776542
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
+.+++||+.+.+....-..+..+ ..+.+.+ .+..||+.++.+ +.++++|.....
T Consensus 138 ----~~v~~~d~~~~~~~~~~~~~~~~------~~~~~~~-dg~~l~~~~~~~------~~v~~~d~~~~~ 191 (391)
T 1l0q_A 138 ----KTVSVINTVTKAVINTVSVGRSP------KGIAVTP-DGTKVYVANFDS------MSISVIDTVTNS 191 (391)
T ss_dssp ----TEEEEEETTTTEEEEEEECCSSE------EEEEECT-TSSEEEEEETTT------TEEEEEETTTTE
T ss_pred ----CEEEEEECCCCcEEEEEecCCCc------ceEEECC-CCCEEEEEeCCC------CEEEEEECCCCe
Confidence 36999999988765554432111 2233321 245676766543 347888876543
No 29
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=94.82 E-value=1.1 Score=44.91 Aligned_cols=182 Identities=10% Similarity=0.058 Sum_probs=97.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
..++++|+.+.+...+. ..+. .-.+.... ++ +|++.+..+ -...+|+||+.+.+...+...
T Consensus 203 ~~i~~~d~~tg~~~~l~---~~~~--~~~~~~~spdg~~la~~~~~~---------g~~~i~~~d~~~~~~~~l~~~--- 265 (415)
T 2hqs_A 203 SALVIQTLANGAVRQVA---SFPR--HNGAPAFSPDGSKLAFALSKT---------GSLNLYVMDLASGQIRQVTDG--- 265 (415)
T ss_dssp CEEEEEETTTCCEEEEE---CCSS--CEEEEEECTTSSEEEEEECTT---------SSCEEEEEETTTCCEEECCCC---
T ss_pred cEEEEEECCCCcEEEee---cCCC--cccCEEEcCCCCEEEEEEecC---------CCceEEEEECCCCCEEeCcCC---
Confidence 47899999988776653 1111 11222222 34 455454421 124799999999887665432
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQ 159 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~ 159 (473)
+ .......+ +++.+++++..+. ...+|++|+.+.+-..+.. ......+.+. -+++.+++++....
T Consensus 266 ~---~~~~~~~~spdg~~l~~~s~~~g---~~~i~~~d~~~~~~~~l~~-----~~~~~~~~~~spdG~~l~~~~~~~g- 333 (415)
T 2hqs_A 266 R---SNNTEPTWFPDSQNLAFTSDQAG---RPQVYKVNINGGAPQRITW-----EGSQNQDADVSSDGKFMVMVSSNGG- 333 (415)
T ss_dssp S---SCEEEEEECTTSSEEEEEECTTS---SCEEEEEETTSSCCEECCC-----SSSEEEEEEECTTSSEEEEEEECSS-
T ss_pred C---CcccceEECCCCCEEEEEECCCC---CcEEEEEECCCCCEEEEec-----CCCcccCeEECCCCCEEEEEECcCC-
Confidence 1 11222333 5554555443221 2479999998877555432 1122222222 24555555554221
Q ss_pred CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
...++++|+.+.....+... .. .....+. .+++.+++++.... ...+|.++.....
T Consensus 334 --~~~i~~~d~~~~~~~~l~~~-----~~--~~~~~~s--pdg~~l~~~s~~~~---~~~l~~~d~~g~~ 389 (415)
T 2hqs_A 334 --QQHIAKQDLATGGVQVLSST-----FL--DETPSLA--PNGTMVIYSSSQGM---GSVLNLVSTDGRF 389 (415)
T ss_dssp --CEEEEEEETTTCCEEECCCS-----SS--CEEEEEC--TTSSEEEEEEEETT---EEEEEEEETTSCC
T ss_pred --ceEEEEEECCCCCEEEecCC-----CC--cCCeEEc--CCCCEEEEEEcCCC---ccEEEEEECCCCc
Confidence 34699999999888665432 11 1222232 35666666664432 2368888876543
No 30
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=94.79 E-value=0.73 Score=50.41 Aligned_cols=183 Identities=10% Similarity=0.077 Sum_probs=101.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCc-ccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~-R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+-+++||+.+.+|.........+.. ..-.+++.. ++.|++..- ..-+++||+.+.+|+.+......
T Consensus 469 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~------------~~Gl~~~~~~~~~~~~~~~~~~l 536 (781)
T 3v9f_A 469 AGVFVIDLASKKVIHHYDTSNSQLLENFVRSIAQDSEGRFWIGTF------------GGGVGIYTPDMQLVRKFNQYEGF 536 (781)
T ss_dssp TEEEEEESSSSSCCEEECTTTSSCSCSCEEEEEECTTCCEEEEES------------SSCEEEECTTCCEEEEECTTTTC
T ss_pred CceEEEeCCCCeEEecccCcccccccceeEEEEEcCCCCEEEEEc------------CCCEEEEeCCCCeEEEccCCCCC
Confidence 4578899998888765321111111 111222222 356666432 12488999999999887643222
Q ss_pred CCCceeeEEEEE-CCEEEEEeCCCCCCCccceE-EEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCC
Q 011998 83 PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDV-HILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQ 159 (473)
Q Consensus 83 P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv-~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~ 159 (473)
|.... .++... ++.|++-.. +.+ ++||+.+.+++.......+|.... .+++.. +++||+.+.
T Consensus 537 ~~~~i-~~i~~d~~g~lWi~T~--------~Glv~~~d~~~~~~~~~~~~~gl~~~~i-~~i~~d~~g~lW~~t~----- 601 (781)
T 3v9f_A 537 CSNTI-NQIYRSSKGQMWLATG--------EGLVCFPSARNFDYQVFQRKEGLPNTHI-RAISEDKNGNIWASTN----- 601 (781)
T ss_dssp SCSCE-EEEEECTTSCEEEEET--------TEEEEESCTTTCCCEEECGGGTCSCCCC-CEEEECSSSCEEEECS-----
T ss_pred CCCee-EEEEECCCCCEEEEEC--------CCceEEECCCCCcEEEccccCCCCCceE-EEEEECCCCCEEEEcC-----
Confidence 22211 222222 567777432 346 889999998887765333443332 333333 466777542
Q ss_pred CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
+.+.+||+++.+++......-.+...+...+++.+ .++.||+ ||.++ +..|+...
T Consensus 602 ---~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~--~~G~l~~-g~~~G-------l~~f~p~~ 656 (781)
T 3v9f_A 602 ---TGISCYITSKKCFYTYDHSNNIPQGSFISGCVTKD--HNGLIYF-GSING-------LCFFNPDI 656 (781)
T ss_dssp ---SCEEEEETTTTEEEEECGGGTCCSSCEEEEEEEEC--TTSCEEE-EETTE-------EEEECSCC
T ss_pred ---CceEEEECCCCceEEecccCCccccccccCceEEC--CCCEEEE-ECCCc-------eEEEChhh
Confidence 23899999999988876554445554444444442 3566555 55433 45566543
No 31
>3nok_A Glutaminyl cyclase; beta-propeller, cyclotransferase, pyrogl transferase; HET: MES DDQ; 1.65A {Myxococcus xanthus}
Probab=94.51 E-value=1.4 Score=42.28 Aligned_cols=136 Identities=14% Similarity=0.093 Sum_probs=85.2
Q ss_pred EEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCc
Q 011998 7 LHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSAR 86 (473)
Q Consensus 7 v~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R 86 (473)
|.++|+.+.+-.... ++..-++..++..+++||+.... .+.+++||+.+.+-..--+ .+-
T Consensus 77 v~~iD~~Tgkv~~~~----l~~~~FgeGit~~g~~Ly~ltw~-----------~~~v~V~D~~Tl~~~~ti~-----~~~ 136 (268)
T 3nok_A 77 LRQLSLESAQPVWME----RLGNIFAEGLASDGERLYQLTWT-----------EGLLFTWSGMPPQRERTTR-----YSG 136 (268)
T ss_dssp EEECCSSCSSCSEEE----ECTTCCEEEEEECSSCEEEEESS-----------SCEEEEEETTTTEEEEEEE-----CSS
T ss_pred EEEEECCCCcEEeEE----CCCCcceeEEEEeCCEEEEEEcc-----------CCEEEEEECCcCcEEEEEe-----CCC
Confidence 677777776543321 23344667788889999998663 3579999999876543222 223
Q ss_pred eeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEE-eeCCCCCCCCcce-eEEEEECCEEEEEecccCCCCcccc
Q 011998 87 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLSPRAG-HSTVAFGKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 87 ~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~-l~~~g~~p~~R~~-hs~~~~~~~LyV~GG~~~~~~~~nd 164 (473)
.+.+++..+++||+.-| .+.++.+|+++.+-.. ++. +.-+.+... --+...+++||+-- + ..++
T Consensus 137 eGwGLt~Dg~~L~vSdG-------s~~l~~iDp~T~~v~~~I~V-~~~g~~v~~lNeLe~~dG~lyanv-w-----~s~~ 202 (268)
T 3nok_A 137 EGWGLCYWNGKLVRSDG-------GTMLTFHEPDGFALVGAVQV-KLRGQPVELINELECANGVIYANI-W-----HSSD 202 (268)
T ss_dssp CCCCEEEETTEEEEECS-------SSEEEEECTTTCCEEEEEEC-EETTEECCCEEEEEEETTEEEEEE-T-----TCSE
T ss_pred ceeEEecCCCEEEEECC-------CCEEEEEcCCCCeEEEEEEe-CCCCcccccccccEEeCCEEEEEE-C-----CCCe
Confidence 45677777889999754 3579999999987543 332 111212111 11334478888532 1 2468
Q ss_pred EEEEeCCCCcEE
Q 011998 165 LYMIDVDSGLWT 176 (473)
Q Consensus 165 v~~yd~~t~~W~ 176 (473)
|.+.|+++++=.
T Consensus 203 I~vIDp~TG~V~ 214 (268)
T 3nok_A 203 VLEIDPATGTVV 214 (268)
T ss_dssp EEEECTTTCBEE
T ss_pred EEEEeCCCCcEE
Confidence 999999998643
No 32
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=94.20 E-value=0.88 Score=49.86 Aligned_cols=173 Identities=14% Similarity=0.135 Sum_probs=94.0
Q ss_pred CcEEEEECCCCeEEecccCCCC-CCcccc-eEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC-C
Q 011998 5 RDLHILDTSSHTWISPSVRGEG-PEAREG-HSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS-G 80 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~-P~~R~~-hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g 80 (473)
+-+++||+.+.+|+........ ...... .++... ++.|++... .-+++||+.+.++ .+... .
T Consensus 471 ~Gl~~~~~~~~~~~~~~~~~~~~~~~~~~i~~i~~d~~g~lWigt~-------------~Gl~~~~~~~~~~-~~~~~~~ 536 (795)
T 4a2l_A 471 SALVRFNPEQRSFTTIEKEKDGTPVVSKQITTLFRDSHKRLWIGGE-------------EGLSVFKQEGLDI-QKASILP 536 (795)
T ss_dssp SCEEEEETTTTEEEECCBCTTCCBCCCCCEEEEEECTTCCEEEEES-------------SCEEEEEEETTEE-EECCCSC
T ss_pred CceeEEeCCCCeEEEccccccccccCCceEEEEEECCCCCEEEEeC-------------CceEEEeCCCCeE-EEecCCC
Confidence 4578999999999876432100 111111 122222 356766432 2488999998888 54321 0
Q ss_pred CCCCC-ceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccC
Q 011998 81 NPPSA-RDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD 157 (473)
Q Consensus 81 ~~P~~-R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~ 157 (473)
....+ ..-.+++.. ++.|++-.. ..+++||+.+.+++.......+|... -.+.+.- +++||+.+.
T Consensus 537 ~~~l~~~~i~~i~~d~~g~lWigT~--------~Gl~~~d~~~~~~~~~~~~~gl~~~~-i~~i~~d~~g~lWi~t~--- 604 (795)
T 4a2l_A 537 VSNVTKLFTNCIYEASNGIIWVGTR--------EGFYCFNEKDKQIKRYNTTNGLPNNV-VYGILEDSFGRLWLSTN--- 604 (795)
T ss_dssp SCGGGGSCEEEEEECTTSCEEEEES--------SCEEEEETTTTEEEEECGGGTCSCSC-EEEEEECTTSCEEEEET---
T ss_pred CCCCCCCeeEEEEECCCCCEEEEeC--------CCceeECCCCCcEEEeCCCCCCchhh-eEEEEECCCCCEEEEcC---
Confidence 00111 112222222 577877432 24889999999998875433344332 2233332 356877653
Q ss_pred CCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC
Q 011998 158 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 158 ~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
+.+.+||+++.+++......-.+...+...+++.+ .++.|++ ||.+
T Consensus 605 -----~Gl~~~~~~~~~~~~~~~~dGl~~~~f~~~~~~~~--~~G~l~~-g~~~ 650 (795)
T 4a2l_A 605 -----RGISCFNPETEKFRNFTESDGLQSNQFNTASYCRT--SVGQMYF-GGIN 650 (795)
T ss_dssp -----TEEEEEETTTTEEEEECGGGTCSCSCEEEEEEEEC--TTSCEEE-EETT
T ss_pred -----CceEEEcCCCCcEEEcCCcCCCccccCccCceeEC--CCCeEEE-ecCC
Confidence 24889999999988776543345444433344432 3566655 5543
No 33
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.99 E-value=1.8 Score=42.59 Aligned_cols=185 Identities=17% Similarity=0.086 Sum_probs=93.1
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+|++|+.+.++..+... +....-.+++.. ++.+++.++.+ ..+++||+.+.+.......+....
T Consensus 102 ~l~~~d~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~~~~~~~~-----------~~i~~~d~~~g~~~~~~~~~~~~~ 167 (433)
T 3bws_A 102 KLIALDKEGITHRFISRF---KTGFQPKSVRFIDNTRLAIPLLED-----------EGMDVLDINSGQTVRLSPPEKYKK 167 (433)
T ss_dssp CEEECCBTTCSEEEEEEE---ECSSCBCCCEESSSSEEEEEBTTS-----------SSEEEEETTTCCEEEECCCHHHHT
T ss_pred EEEEECCCCCcceEEEEE---cCCCCceEEEEeCCCeEEEEeCCC-----------CeEEEEECCCCeEeeecCcccccc
Confidence 577777766655543211 111111122222 67788877631 358999999887665432211111
Q ss_pred CceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCC
Q 011998 85 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQN 160 (473)
Q Consensus 85 ~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~ 160 (473)
......++.+ ++.+|+.|+.+ ..+.+||+.+.+....-. .....-.+++.. +..+|+.++..
T Consensus 168 ~~~~v~~~~~~~~~~~~~s~~~d------~~v~~~d~~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~---- 233 (433)
T 3bws_A 168 KLGFVETISIPEHNELWVSQMQA------NAVHVFDLKTLAYKATVD----LTGKWSKILLYDPIRDLVYCSNWIS---- 233 (433)
T ss_dssp TCCEEEEEEEGGGTEEEEEEGGG------TEEEEEETTTCCEEEEEE----CSSSSEEEEEEETTTTEEEEEETTT----
T ss_pred cCCceeEEEEcCCCEEEEEECCC------CEEEEEECCCceEEEEEc----CCCCCeeEEEEcCCCCEEEEEecCC----
Confidence 1222223333 68888888743 468999998866443321 111122233333 34466665432
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCc--cCcEEEEEcccc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEA--LDDMYYLYTGLV 228 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~--~~dv~~ld~~~~ 228 (473)
..+++||+.+.+....... ... ..++.+. .++..+++++....... -..++.+|....
T Consensus 234 --~~i~~~d~~~~~~~~~~~~-----~~~-~~~~~~~--~~g~~l~~~~~~~~~~~~~dg~i~~~d~~~~ 293 (433)
T 3bws_A 234 --EDISVIDRKTKLEIRKTDK-----IGL-PRGLLLS--KDGKELYIAQFSASNQESGGGRLGIYSMDKE 293 (433)
T ss_dssp --TEEEEEETTTTEEEEECCC-----CSE-EEEEEEC--TTSSEEEEEEEESCTTCSCCEEEEEEETTTT
T ss_pred --CcEEEEECCCCcEEEEecC-----CCC-ceEEEEc--CCCCEEEEEECCCCccccCCCeEEEEECCCC
Confidence 3599999988765433221 111 2233332 34545555554332211 246778887654
No 34
>3bws_A Protein LP49; two-domain, immunoglobulin-like, 7-bladed beta propeller, unknown function; 1.99A {Leptospira interrogans}
Probab=93.67 E-value=5.4 Score=39.13 Aligned_cols=184 Identities=10% Similarity=0.017 Sum_probs=92.2
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+.++|+.+.+.......+...........+.+ ++.+|+.|+. ...+++||+.+.+....... .
T Consensus 145 ~i~~~d~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~s~~~-----------d~~v~~~d~~~~~~~~~~~~---~ 210 (433)
T 3bws_A 145 GMDVLDINSGQTVRLSPPEKYKKKLGFVETISIPEHNELWVSQMQ-----------ANAVHVFDLKTLAYKATVDL---T 210 (433)
T ss_dssp SEEEEETTTCCEEEECCCHHHHTTCCEEEEEEEGGGTEEEEEEGG-----------GTEEEEEETTTCCEEEEEEC---S
T ss_pred eEEEEECCCCeEeeecCcccccccCCceeEEEEcCCCEEEEEECC-----------CCEEEEEECCCceEEEEEcC---C
Confidence 488899888776653211000011111122233 5788888874 24689999988654332221 1
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCC
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~ 160 (473)
...-.+++.. +..+|+.++.+ ..+++||+.+.+....-. ....-..++.. +++.+++++......
T Consensus 211 -~~~~~~~~~~~~~~~l~~~~~~~------~~i~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~~~~~ 278 (433)
T 3bws_A 211 -GKWSKILLYDPIRDLVYCSNWIS------EDISVIDRKTKLEIRKTD-----KIGLPRGLLLSKDGKELYIAQFSASNQ 278 (433)
T ss_dssp -SSSEEEEEEETTTTEEEEEETTT------TEEEEEETTTTEEEEECC-----CCSEEEEEEECTTSSEEEEEEEESCTT
T ss_pred -CCCeeEEEEcCCCCEEEEEecCC------CcEEEEECCCCcEEEEec-----CCCCceEEEEcCCCCEEEEEECCCCcc
Confidence 1112233333 45677776543 368999998876544322 12222233332 344445555422211
Q ss_pred --ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 161 --LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 161 --~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.-..+++||+.+.+-...... + . ......+.+ .++.+|+.++.+. .+.+++....
T Consensus 279 ~~~dg~i~~~d~~~~~~~~~~~~---~--~-~~~~~~~~~-~g~~l~~~~~~~~------~v~v~d~~~~ 335 (433)
T 3bws_A 279 ESGGGRLGIYSMDKEKLIDTIGP---P--G-NKRHIVSGN-TENKIYVSDMCCS------KIEVYDLKEK 335 (433)
T ss_dssp CSCCEEEEEEETTTTEEEEEEEE---E--E-CEEEEEECS-STTEEEEEETTTT------EEEEEETTTT
T ss_pred ccCCCeEEEEECCCCcEEeeccC---C--C-CcceEEECC-CCCEEEEEecCCC------EEEEEECCCC
Confidence 134689999988754333211 1 1 111222321 2446777765443 4777777643
No 35
>1l0q_A Surface layer protein; SLP, S-layer, 7-bladed beta-propeller superfamily, protein binding; HET: YCM; 2.40A {Methanosarcina mazei} SCOP: b.1.3.1 b.69.2.3
Probab=93.49 E-value=2.2 Score=41.36 Aligned_cols=175 Identities=18% Similarity=0.178 Sum_probs=91.5
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+++||+.+++....... . ..-.+++.. +..+|+.++. ...+++||+.+.+.......+..
T Consensus 96 ~~v~v~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~-----------~~~v~~~d~~~~~~~~~~~~~~~ 159 (391)
T 1l0q_A 96 STLSVIDTTSNTVAGTVKT---G--KSPLGLALSPDGKKLYVTNNG-----------DKTVSVINTVTKAVINTVSVGRS 159 (391)
T ss_dssp TEEEEEETTTTEEEEEEEC---S--SSEEEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEECCSS
T ss_pred CEEEEEECCCCeEEEEEeC---C--CCcceEEECCCCCEEEEEeCC-----------CCEEEEEECCCCcEEEEEecCCC
Confidence 4688999988876543211 1 112333333 2467777763 24799999998876655433211
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecccCC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDS 158 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~ 158 (473)
-..++.. +..||+.++.+ ..+++||+.+.+....-. ....-..++.. ++ .||+.+..
T Consensus 160 -----~~~~~~~~dg~~l~~~~~~~------~~v~~~d~~~~~~~~~~~-----~~~~~~~~~~~~~g~~l~~~~~~--- 220 (391)
T 1l0q_A 160 -----PKGIAVTPDGTKVYVANFDS------MSISVIDTVTNSVIDTVK-----VEAAPSGIAVNPEGTKAYVTNVD--- 220 (391)
T ss_dssp -----EEEEEECTTSSEEEEEETTT------TEEEEEETTTTEEEEEEE-----CSSEEEEEEECTTSSEEEEEEEC---
T ss_pred -----cceEEECCCCCEEEEEeCCC------CEEEEEECCCCeEEEEEe-----cCCCccceEECCCCCEEEEEecC---
Confidence 1233332 44677776543 458999998876544432 11111222222 34 35544321
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.....+.+||+.+.+-...-..+. . .....+.+ .+..||+.++.+ +.+.++|....
T Consensus 221 -~~~~~v~~~d~~~~~~~~~~~~~~-----~-~~~~~~s~-dg~~l~~s~~~d------~~v~v~d~~~~ 276 (391)
T 1l0q_A 221 -KYFNTVSMIDTGTNKITARIPVGP-----D-PAGIAVTP-DGKKVYVALSFX------NTVSVIDTATN 276 (391)
T ss_dssp -SSCCEEEEEETTTTEEEEEEECCS-----S-EEEEEECT-TSSEEEEEETTT------TEEEEEETTTT
T ss_pred -cCCCcEEEEECCCCeEEEEEecCC-----C-ccEEEEcc-CCCEEEEEcCCC------CEEEEEECCCC
Confidence 123569999998875433322111 1 12222321 244666665543 34777777654
No 36
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=93.26 E-value=2.1 Score=40.88 Aligned_cols=138 Identities=10% Similarity=0.059 Sum_probs=68.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE-EEeecCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSG 80 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~g 80 (473)
..+.+||..+.+|..+....... ..-.++... + +.+++.|+.+ ..+.+||+.+... ......+
T Consensus 79 g~v~iwd~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~~~ 145 (379)
T 3jrp_A 79 GKVLIWKEENGRWSQIAVHAVHS--ASVNSVQWAPHEYGPLLLVASSD-----------GKVSVVEFKENGTTSPIIIDA 145 (379)
T ss_dssp SCEEEEEEETTEEEEEEEECCCS--SCEEEEEECCGGGCSEEEEEETT-----------SEEEEEECCTTSCCCEEEEEC
T ss_pred CEEEEEEcCCCceeEeeeecCCC--cceEEEEeCCCCCCCEEEEecCC-----------CcEEEEecCCCCceeeEEecC
Confidence 35788888888877654321111 111222222 2 5677777742 3578888876522 1111100
Q ss_pred CCCCCceeeEEEEE--------------CCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCCcce-eEEE
Q 011998 81 NPPSARDSHTCSSW--------------KNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAG-HSTV 143 (473)
Q Consensus 81 ~~P~~R~~hs~~~~--------------~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~-hs~~ 143 (473)
... .-.+++.. ++.+++.|+.++ .+.+||+.+.. |..+.. +...... .+++
T Consensus 146 -~~~--~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~---~~~h~~~v~~~~ 213 (379)
T 3jrp_A 146 -HAI--GVNSASWAPATIEEDGEHNGTKESRKFVTGGADN------LVKIWKYNSDAQTYVLEST---LEGHSDWVRDVA 213 (379)
T ss_dssp -CTT--CEEEEEECCCC----------CTTCEEEEEETTS------CEEEEEEETTTTEEEEEEE---ECCCSSCEEEEE
T ss_pred -CCC--ceEEEEEcCccccccccccCCCCCCEEEEEeCCC------eEEEEEecCCCcceeeEEE---EecccCcEeEEE
Confidence 011 11122221 367788887654 46777765443 544432 2211222 2233
Q ss_pred EE-C---CEEEEEecccCCCCccccEEEEeCCCC
Q 011998 144 AF-G---KNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 144 ~~-~---~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
.. + +.+++.|+.+ ..+.+||+.+.
T Consensus 214 ~sp~~~~~~~l~s~~~d------g~i~iwd~~~~ 241 (379)
T 3jrp_A 214 WSPTVLLRSYLASVSQD------RTCIIWTQDNE 241 (379)
T ss_dssp ECCCCSSSEEEEEEETT------SCEEEEEESST
T ss_pred ECCCCCCCCeEEEEeCC------CEEEEEeCCCC
Confidence 32 3 5777777753 23778887765
No 37
>2hqs_A Protein TOLB; TOLB, PAL, TOL, transport protein-lipoprotein complex; 1.50A {Escherichia coli} SCOP: b.68.4.1 c.51.2.1 PDB: 3iax_A 1c5k_A 2ivz_A 2w8b_B 2w8b_A 1crz_A
Probab=92.88 E-value=4 Score=40.75 Aligned_cols=183 Identities=9% Similarity=0.080 Sum_probs=93.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..++++|..+..-..+.. ..... .+... -+++.+++++... ....++++|+.+.+...+... +
T Consensus 159 ~~i~i~d~~g~~~~~l~~----~~~~v-~~~~~Spdg~~la~~s~~~--------~~~~i~~~d~~tg~~~~l~~~---~ 222 (415)
T 2hqs_A 159 YELRVSDYDGYNQFVVHR----SPQPL-MSPAWSPDGSKLAYVTFES--------GRSALVIQTLANGAVRQVASF---P 222 (415)
T ss_dssp EEEEEEETTSCSCEEEEE----ESSCE-EEEEECTTSSEEEEEECTT--------SSCEEEEEETTTCCEEEEECC---S
T ss_pred ceEEEEcCCCCCCEEEeC----CCCcc-eeeEEcCCCCEEEEEEecC--------CCcEEEEEECCCCcEEEeecC---C
Confidence 467777776544433321 00111 12222 2455566666421 124799999999887766432 1
Q ss_pred CCceeeEEEEE--CC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCC
Q 011998 84 SARDSHTCSSW--KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDS 158 (473)
Q Consensus 84 ~~R~~hs~~~~--~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~ 158 (473)
.. ..+..+ ++ .|++.+..++ ...+|++|+.+.+...+.. . . .......+ +++.+++++...
T Consensus 223 --~~-~~~~~~spdg~~la~~~~~~g----~~~i~~~d~~~~~~~~l~~---~--~-~~~~~~~~spdg~~l~~~s~~~- 288 (415)
T 2hqs_A 223 --RH-NGAPAFSPDGSKLAFALSKTG----SLNLYVMDLASGQIRQVTD---G--R-SNNTEPTWFPDSQNLAFTSDQA- 288 (415)
T ss_dssp --SC-EEEEEECTTSSEEEEEECTTS----SCEEEEEETTTCCEEECCC---C--S-SCEEEEEECTTSSEEEEEECTT-
T ss_pred --Cc-ccCEEEcCCCCEEEEEEecCC----CceEEEEECCCCCEEeCcC---C--C-CcccceEECCCCCEEEEEECCC-
Confidence 11 222333 44 4555554432 2579999999988766543 1 1 11222222 455445544311
Q ss_pred CCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccce
Q 011998 159 QNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNE 230 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w 230 (473)
-...+|.+|+.+..-..+... .... ....+. .+++.+++++.... ...++.++......
T Consensus 289 --g~~~i~~~d~~~~~~~~l~~~-----~~~~-~~~~~s--pdG~~l~~~~~~~g---~~~i~~~d~~~~~~ 347 (415)
T 2hqs_A 289 --GRPQVYKVNINGGAPQRITWE-----GSQN-QDADVS--SDGKFMVMVSSNGG---QQHIAKQDLATGGV 347 (415)
T ss_dssp --SSCEEEEEETTSSCCEECCCS-----SSEE-EEEEEC--TTSSEEEEEEECSS---CEEEEEEETTTCCE
T ss_pred --CCcEEEEEECCCCCEEEEecC-----CCcc-cCeEEC--CCCCEEEEEECcCC---ceEEEEEECCCCCE
Confidence 124699999988765544321 1111 122222 35555555554321 34688888776543
No 38
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=92.72 E-value=4.1 Score=36.91 Aligned_cols=145 Identities=13% Similarity=0.047 Sum_probs=77.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCC-CeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~ 82 (473)
..++++|+.+.+...+... ...-.++.. -+++.+++++. ..+++||+.+ .+...+....
T Consensus 22 ~~i~~~d~~~~~~~~~~~~-----~~~v~~~~~spdg~~l~~~~~------------~~i~~~d~~~~~~~~~~~~~~-- 82 (297)
T 2ojh_A 22 SSIEIFNIRTRKMRVVWQT-----PELFEAPNWSPDGKYLLLNSE------------GLLYRLSLAGDPSPEKVDTGF-- 82 (297)
T ss_dssp EEEEEEETTTTEEEEEEEE-----SSCCEEEEECTTSSEEEEEET------------TEEEEEESSSCCSCEECCCTT--
T ss_pred eeEEEEeCCCCceeeeccC-----CcceEeeEECCCCCEEEEEcC------------CeEEEEeCCCCCCceEecccc--
Confidence 4689999999887765321 111122222 24566666542 3699999998 7766554321
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCE-EEEEecccCCCC
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFTDSQN 160 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~-LyV~GG~~~~~~ 160 (473)
...........-+++.+++++.... ....+|.++..+.....+.. ... ....... +++ |++.++.. .
T Consensus 83 ~~~~~~~~~~spdg~~l~~~~~~~~--~~~~l~~~~~~~~~~~~~~~----~~~--~~~~~~spdg~~l~~~~~~~-~-- 151 (297)
T 2ojh_A 83 ATICNNDHGISPDGALYAISDKVEF--GKSAIYLLPSTGGTPRLMTK----NLP--SYWHGWSPDGKSFTYCGIRD-Q-- 151 (297)
T ss_dssp CCCBCSCCEECTTSSEEEEEECTTT--SSCEEEEEETTCCCCEECCS----SSS--EEEEEECTTSSEEEEEEEET-T--
T ss_pred ccccccceEECCCCCEEEEEEeCCC--CcceEEEEECCCCceEEeec----CCC--ccceEECCCCCEEEEEECCC-C--
Confidence 1111111122225666666654332 24789999988877655543 111 2222232 344 55444432 1
Q ss_pred ccccEEEEeCCCCcEEEEee
Q 011998 161 LYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~ 180 (473)
...+|.+++.+.....+..
T Consensus 152 -~~~l~~~~~~~~~~~~~~~ 170 (297)
T 2ojh_A 152 -VFDIYSMDIDSGVETRLTH 170 (297)
T ss_dssp -EEEEEEEETTTCCEEECCC
T ss_pred -ceEEEEEECCCCcceEccc
Confidence 1358888888777665543
No 39
>3v9f_A Two-component system sensor histidine kinase/RESP regulator, hybrid (ONE-component...; beta-propeller, beta-sandwich; 3.30A {Bacteroides thetaiotaomicron}
Probab=92.69 E-value=6.2 Score=42.95 Aligned_cols=182 Identities=9% Similarity=0.008 Sum_probs=98.7
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
-+++||+.+++++..... ..+. ..-.+++.. ++.|++... .-+++||+.+.+|..+......+.
T Consensus 428 Gl~~~~~~~~~~~~~~~~-~~~~-~~v~~i~~d~~g~lwigt~-------------~Gl~~~~~~~~~~~~~~~~~~~~~ 492 (781)
T 3v9f_A 428 NISYYNTRLKKFQIIELE-KNEL-LDVRVFYEDKNKKIWIGTH-------------AGVFVIDLASKKVIHHYDTSNSQL 492 (781)
T ss_dssp EEEEECSSSCEEEECCST-TTCC-CCEEEEEECTTSEEEEEET-------------TEEEEEESSSSSCCEEECTTTSSC
T ss_pred CEEEEcCCCCcEEEeccC-CCCC-CeEEEEEECCCCCEEEEEC-------------CceEEEeCCCCeEEecccCccccc
Confidence 478888888888776421 1111 111223232 356666422 358999999998887754321111
Q ss_pred -CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCCc
Q 011998 85 -ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNL 161 (473)
Q Consensus 85 -~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~~ 161 (473)
...-.+++.. ++.|++-. . -..+++||+.+.+|+.......++.... .+.+. .++.||+-..
T Consensus 493 ~~~~i~~i~~d~~g~lWigt-~------~~Gl~~~~~~~~~~~~~~~~~~l~~~~i-~~i~~d~~g~lWi~T~------- 557 (781)
T 3v9f_A 493 LENFVRSIAQDSEGRFWIGT-F------GGGVGIYTPDMQLVRKFNQYEGFCSNTI-NQIYRSSKGQMWLATG------- 557 (781)
T ss_dssp SCSCEEEEEECTTCCEEEEE-S------SSCEEEECTTCCEEEEECTTTTCSCSCE-EEEEECTTSCEEEEET-------
T ss_pred ccceeEEEEEcCCCCEEEEE-c------CCCEEEEeCCCCeEEEccCCCCCCCCee-EEEEECCCCCEEEEEC-------
Confidence 1122233332 56777742 1 1348899999999988764322332211 12222 2456776432
Q ss_pred cccE-EEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccce
Q 011998 162 YDDL-YMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNE 230 (473)
Q Consensus 162 ~ndv-~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w 230 (473)
+.+ ++||+.+.+++.......+|.... .+.+.+ .++.|++.+. +.+.+|+......
T Consensus 558 -~Glv~~~d~~~~~~~~~~~~~gl~~~~i--~~i~~d--~~g~lW~~t~--------~Gl~~~~~~~~~~ 614 (781)
T 3v9f_A 558 -EGLVCFPSARNFDYQVFQRKEGLPNTHI--RAISED--KNGNIWASTN--------TGISCYITSKKCF 614 (781)
T ss_dssp -TEEEEESCTTTCCCEEECGGGTCSCCCC--CEEEEC--SSSCEEEECS--------SCEEEEETTTTEE
T ss_pred -CCceEEECCCCCcEEEccccCCCCCceE--EEEEEC--CCCCEEEEcC--------CceEEEECCCCce
Confidence 136 899999988887765433333332 233332 3677777541 2377788776543
No 40
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=92.05 E-value=5 Score=37.37 Aligned_cols=146 Identities=12% Similarity=0.036 Sum_probs=74.9
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++..++.|+. ...+.+||+.+.++....... ..........+ ++.+++.|+.+ ..+.+
T Consensus 108 ~~~~l~~~~~-----------d~~i~~~d~~~~~~~~~~~~~---~~~~~i~~~~~~~~~~~l~~~~~d------g~v~~ 167 (337)
T 1gxr_A 108 DGCTLIVGGE-----------ASTLSIWDLAAPTPRIKAELT---SSAPACYALAISPDSKVCFSCCSD------GNIAV 167 (337)
T ss_dssp TSSEEEEEES-----------SSEEEEEECCCC--EEEEEEE---CSSSCEEEEEECTTSSEEEEEETT------SCEEE
T ss_pred CCCEEEEEcC-----------CCcEEEEECCCCCcceeeecc---cCCCceEEEEECCCCCEEEEEeCC------CcEEE
Confidence 3566667763 246889999888754433221 11111222222 56677777754 34889
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 195 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~ 195 (473)
||+.+.+....-. . ....-.+++.. ++.+++.|+.. ..+.+||+.+.+-...... +.+ ..+..
T Consensus 168 ~d~~~~~~~~~~~---~-~~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~~---~~~---v~~~~ 231 (337)
T 1gxr_A 168 WDLHNQTLVRQFQ---G-HTDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHDF---TSQ---IFSLG 231 (337)
T ss_dssp EETTTTEEEEEEC---C-CSSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEEC---SSC---EEEEE
T ss_pred EeCCCCceeeeee---c-ccCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeecC---CCc---eEEEE
Confidence 9998876443321 1 11112222222 45566666642 3489999987754333221 111 12222
Q ss_pred eccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 196 LDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 196 ~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+. .++.++++|+.+. .+..++....
T Consensus 232 ~s--~~~~~l~~~~~~~------~i~~~~~~~~ 256 (337)
T 1gxr_A 232 YC--PTGEWLAVGMESS------NVEVLHVNKP 256 (337)
T ss_dssp EC--TTSSEEEEEETTS------CEEEEETTSS
T ss_pred EC--CCCCEEEEEcCCC------cEEEEECCCC
Confidence 21 3566777776544 3677776654
No 41
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=92.00 E-value=13 Score=39.92 Aligned_cols=111 Identities=19% Similarity=0.217 Sum_probs=61.4
Q ss_pred CcEEEEECCCC--eEEecccCCCC--C---CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGEG--P---EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~--P---~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
+.|+.+|..|. .|+.-...... + ......+.++.+++||+...- ..++.+|..|. .|+.
T Consensus 87 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~d------------g~l~alD~~tG~~~W~~ 154 (677)
T 1kb0_A 87 SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAWD------------GRLIALDAATGKEVWHQ 154 (677)
T ss_dssp GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECTT------------SEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcCC------------CEEEEEECCCCCEEeee
Confidence 56899999886 58864211000 0 001123455678888886441 46999999876 4875
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEee
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 128 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~ 128 (473)
-.............+.++.++.+|+-.+... ...-..++.||..+.+ |+.-.
T Consensus 155 ~~~~~~~~~~~~~~~p~v~~~~v~v~~~~~~-~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 155 NTFEGQKGSLTITGAPRVFKGKVIIGNGGAE-YGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp ETTTTCCSSCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEES
T ss_pred cCCcCcCcCcccccCcEEECCEEEEEecccc-cCCCCEEEEEECCCCcEEEEecc
Confidence 4220100001122233456888877543222 1134679999998876 77644
No 42
>2ojh_A Uncharacterized protein ATU1656/AGR_C_3050; TOLB, 6-stranded beta-propeller, structural genomics, PSI-2; 1.85A {Agrobacterium tumefaciens str}
Probab=91.98 E-value=6.8 Score=35.36 Aligned_cols=191 Identities=11% Similarity=-0.048 Sum_probs=92.8
Q ss_pred CcEEEEECCC-CeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSS-HTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t-~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..++++|+.+ .+...+.. ..........+..-+++.+++++.... ....+|.++..+.....+... .
T Consensus 62 ~~i~~~d~~~~~~~~~~~~--~~~~~~~~~~~~spdg~~l~~~~~~~~-------~~~~l~~~~~~~~~~~~~~~~---~ 129 (297)
T 2ojh_A 62 GLLYRLSLAGDPSPEKVDT--GFATICNNDHGISPDGALYAISDKVEF-------GKSAIYLLPSTGGTPRLMTKN---L 129 (297)
T ss_dssp TEEEEEESSSCCSCEECCC--TTCCCBCSCCEECTTSSEEEEEECTTT-------SSCEEEEEETTCCCCEECCSS---S
T ss_pred CeEEEEeCCCCCCceEecc--ccccccccceEECCCCCEEEEEEeCCC-------CcceEEEEECCCCceEEeecC---C
Confidence 3588889888 76665531 111111122222234555555553111 235799999888765555332 1
Q ss_pred CCceeeEEEEE-CC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCC
Q 011998 84 SARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~-~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~ 160 (473)
. ...+... ++ .|++.++.++ .-.+|.++..+.....+.. .+ ... ..... -+++.+++++..+
T Consensus 130 -~--~~~~~~spdg~~l~~~~~~~~----~~~l~~~~~~~~~~~~~~~---~~-~~~-~~~~~s~dg~~l~~~~~~~--- 194 (297)
T 2ojh_A 130 -P--SYWHGWSPDGKSFTYCGIRDQ----VFDIYSMDIDSGVETRLTH---GE-GRN-DGPDYSPDGRWIYFNSSRT--- 194 (297)
T ss_dssp -S--EEEEEECTTSSEEEEEEEETT----EEEEEEEETTTCCEEECCC---SS-SCE-EEEEECTTSSEEEEEECTT---
T ss_pred -C--ccceEECCCCCEEEEEECCCC----ceEEEEEECCCCcceEccc---CC-Ccc-ccceECCCCCEEEEEecCC---
Confidence 1 2222222 34 4555554332 2468888888887766543 11 111 22222 2444444443211
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCC-----ccCcEEEEEccccce
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLE-----ALDDMYYLYTGLVNE 230 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~-----~~~dv~~ld~~~~~w 230 (473)
-...+|.+++.......+... . .......+. .+++.+++++...... ....++.++......
T Consensus 195 ~~~~i~~~~~~~~~~~~~~~~-----~-~~~~~~~~s--~dg~~l~~~~~~~~~~~~~~~~~~~l~~~d~~~~~~ 261 (297)
T 2ojh_A 195 GQMQIWRVRVDGSSVERITDS-----A-YGDWFPHPS--PSGDKVVFVSYDADVFDHPRDLDVRVQLMDMDGGNV 261 (297)
T ss_dssp SSCEEEEEETTSSCEEECCCC-----S-EEEEEEEEC--TTSSEEEEEEEETTCCSCCSSEEEEEEEEETTSCSC
T ss_pred CCccEEEECCCCCCcEEEecC-----C-cccCCeEEC--CCCCEEEEEEcCCCCCcccccCceEEEEEecCCCCc
Confidence 134688888777766655431 1 112222232 3455555554432211 224688888766543
No 43
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=91.75 E-value=3.3 Score=39.88 Aligned_cols=155 Identities=12% Similarity=0.077 Sum_probs=80.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCE-EEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKR-LFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~-Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
..++++|+.+.+...+.. ......+....- ++. |++... .. .......+|++|+.+..+..+...
T Consensus 168 ~~l~~~d~~~g~~~~~~~----~~~~~~~~~~sp~dg~~l~~~~~-~~-----~~~~~~~l~~~d~~~~~~~~l~~~--- 234 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQ----DTAWLGHPIYRPFDDSTVGFCHE-GP-----HDLVDARMWLVNEDGSNVRKIKEH--- 234 (396)
T ss_dssp EEEEEEETTTCCEEEEEE----ESSCEEEEEEETTEEEEEEEEEC-SC-----SSSCSCCCEEEETTSCCCEESSCC---
T ss_pred ceEEEEECCCCcEEeecc----CCcccccceECCCCCCEEEEEec-CC-----CCCCCceEEEEECCCCceeEeecc---
Confidence 468999999888776631 111122222222 244 444432 11 111235799999988877666431
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccC--
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTD-- 157 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~-- 157 (473)
.+........+ +++.+++....... ....++++|+.+.+...+.. .+. .. ....- +++++++++...
T Consensus 235 -~~~~~~~~~~~spdg~~l~~~~~~~~~-~~~~l~~~d~~~g~~~~l~~---~~~--~~-~~~s~~dg~~l~~~~~~~p~ 306 (396)
T 3c5m_A 235 -AEGESCTHEFWIPDGSAMAYVSYFKGQ-TDRVIYKANPETLENEEVMV---MPP--CS-HLMSNFDGSLMVGDGCDAPV 306 (396)
T ss_dssp -CTTEEEEEEEECTTSSCEEEEEEETTT-CCEEEEEECTTTCCEEEEEE---CCS--EE-EEEECSSSSEEEEEECCC--
T ss_pred -CCCccccceEECCCCCEEEEEecCCCC-ccceEEEEECCCCCeEEeee---CCC--CC-CCccCCCCceEEEecCCcce
Confidence 11122222233 45433333322111 12449999999988777653 221 11 22223 566666654210
Q ss_pred --------CCCccccEEEEeCCCCcEEEEee
Q 011998 158 --------SQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 158 --------~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
...-...++++|+.+.....+..
T Consensus 307 ~~~~~~~~~~~~~~~i~~~d~~~~~~~~l~~ 337 (396)
T 3c5m_A 307 DVADADSYNIENDPFLYVLNTKAKSAQKLCK 337 (396)
T ss_dssp --------CCCCCCEEEEEETTTTBCCEEEE
T ss_pred eeccccccccCCCCcEEEEecccCceEEccC
Confidence 00123579999999888777665
No 44
>1gxr_A ESG1, transducin-like enhancer protein 1; transcriptional CO-repressor, WD40, transcription repressor, WD repeat; 1.65A {Homo sapiens} SCOP: b.69.4.1 PDB: 2ce8_A 2ce9_A
Probab=91.44 E-value=7 Score=36.31 Aligned_cols=175 Identities=11% Similarity=0.024 Sum_probs=86.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+.+||..+.++...... ...... -.+++.. ++..++.|+.+ ..+.+||+.+.+....-.. .
T Consensus 119 ~~i~~~d~~~~~~~~~~~~-~~~~~~-i~~~~~~~~~~~l~~~~~d-----------g~v~~~d~~~~~~~~~~~~---~ 182 (337)
T 1gxr_A 119 STLSIWDLAAPTPRIKAEL-TSSAPA-CYALAISPDSKVCFSCCSD-----------GNIAVWDLHNQTLVRQFQG---H 182 (337)
T ss_dssp SEEEEEECCCC--EEEEEE-ECSSSC-EEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEECC---C
T ss_pred CcEEEEECCCCCcceeeec-ccCCCc-eEEEEECCCCCEEEEEeCC-----------CcEEEEeCCCCceeeeeec---c
Confidence 3577888877764332111 111111 1122222 45666677642 3588999988765443221 1
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCC
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~ 160 (473)
........+ ++..++.|+.+ ..+.+||+.+.+-..... . ...-.+++.. ++++++.|+..
T Consensus 183 --~~~i~~~~~~~~~~~l~~~~~d------g~i~~~d~~~~~~~~~~~---~--~~~v~~~~~s~~~~~l~~~~~~---- 245 (337)
T 1gxr_A 183 --TDGASCIDISNDGTKLWTGGLD------NTVRSWDLREGRQLQQHD---F--TSQIFSLGYCPTGEWLAVGMES---- 245 (337)
T ss_dssp --SSCEEEEEECTTSSEEEEEETT------SEEEEEETTTTEEEEEEE---C--SSCEEEEEECTTSSEEEEEETT----
T ss_pred --cCceEEEEECCCCCEEEEEecC------CcEEEEECCCCceEeeec---C--CCceEEEEECCCCCEEEEEcCC----
Confidence 111222233 56677777643 458899988775433321 1 1112223332 45566676642
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
..+.+||+.+..-..+... ... .....+. .++.+++.|+.+. .+.+++....
T Consensus 246 --~~i~~~~~~~~~~~~~~~~----~~~--v~~~~~~--~~~~~l~~~~~dg------~i~~~~~~~~ 297 (337)
T 1gxr_A 246 --SNVEVLHVNKPDKYQLHLH----ESC--VLSLKFA--YCGKWFVSTGKDN------LLNAWRTPYG 297 (337)
T ss_dssp --SCEEEEETTSSCEEEECCC----SSC--EEEEEEC--TTSSEEEEEETTS------EEEEEETTTC
T ss_pred --CcEEEEECCCCCeEEEcCC----ccc--eeEEEEC--CCCCEEEEecCCC------cEEEEECCCC
Confidence 2488999887753333211 111 1222222 3566677776543 3666776553
No 45
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=91.41 E-value=6.9 Score=37.10 Aligned_cols=138 Identities=13% Similarity=0.192 Sum_probs=68.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+.+||..+.+|..+..... ... .-.++... ++.+++.|+.+ ..+.+||+.+.++........
T Consensus 30 ~~v~i~~~~~~~~~~~~~~~~-h~~-~v~~~~~~~~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~-- 94 (372)
T 1k8k_C 30 HEVHIYEKSGNKWVQVHELKE-HNG-QVTGVDWAPDSNRIVTCGTD-----------RNAYVWTLKGRTWKPTLVILR-- 94 (372)
T ss_dssp SEEEEEEEETTEEEEEEEEEC-CSS-CEEEEEEETTTTEEEEEETT-----------SCEEEEEEETTEEEEEEECCC--
T ss_pred CEEEEEeCCCCcEEeeeeecC-CCC-cccEEEEeCCCCEEEEEcCC-----------CeEEEEECCCCeeeeeEEeec--
Confidence 458888988887665432111 111 11222333 46667777742 358889998888765543211
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCC
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQ 159 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~ 159 (473)
. ...-.++.+ ++.+++.|+.++ .+.+||..+.. |...... ..+....-.+++.. ++.+++.|+..
T Consensus 95 ~-~~~v~~~~~~~~~~~l~~~~~d~------~v~i~d~~~~~~~~~~~~~-~~~~~~~i~~~~~~~~~~~l~~~~~d--- 163 (372)
T 1k8k_C 95 I-NRAARCVRWAPNEKKFAVGSGSR------VISICYFEQENDWWVCKHI-KKPIRSTVLSLDWHPNSVLLAAGSCD--- 163 (372)
T ss_dssp C-SSCEEEEEECTTSSEEEEEETTS------SEEEEEEETTTTEEEEEEE-CTTCCSCEEEEEECTTSSEEEEEETT---
T ss_pred C-CCceeEEEECCCCCEEEEEeCCC------EEEEEEecCCCcceeeeee-ecccCCCeeEEEEcCCCCEEEEEcCC---
Confidence 1 112222333 566777777543 35556655443 3332220 01111112222322 45577777652
Q ss_pred CccccEEEEeCC
Q 011998 160 NLYDDLYMIDVD 171 (473)
Q Consensus 160 ~~~ndv~~yd~~ 171 (473)
..+.+||+.
T Consensus 164 ---g~i~~~d~~ 172 (372)
T 1k8k_C 164 ---FKCRIFSAY 172 (372)
T ss_dssp ---SCEEEEECC
T ss_pred ---CCEEEEEcc
Confidence 247888854
No 46
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=90.69 E-value=12 Score=35.90 Aligned_cols=154 Identities=12% Similarity=-0.010 Sum_probs=78.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
.+|++|+.+.+-.++.. .+.......+..-+++.++++..+ ..++++|+.+.+-..+... |..
T Consensus 61 ~l~~~d~~~g~~~~lt~---~~~~~~~~~~~spdg~~l~~~~~~-----------~~l~~~d~~~g~~~~~~~~---~~~ 123 (388)
T 3pe7_A 61 NYYLLDLNTQVATQLTE---GRGDNTFGGFLSPDDDALFYVKDG-----------RNLMRVDLATLEENVVYQV---PAE 123 (388)
T ss_dssp EEEEEETTTCEEEECCC---SSCBCSSSCEECTTSSEEEEEETT-----------TEEEEEETTTCCEEEEEEC---CTT
T ss_pred eEEEEeCCCCceEEeee---CCCCCccceEEcCCCCEEEEEeCC-----------CeEEEEECCCCcceeeeec---hhh
Confidence 58899999888877642 222111112222344444444321 3799999999876665443 332
Q ss_pred ceeeEEEEE--CCEEEEEeCCCC----------------CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-C
Q 011998 86 RDSHTCSSW--KNKIIVIGGEDG----------------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-G 146 (473)
Q Consensus 86 R~~hs~~~~--~~~IyV~GG~~~----------------~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~ 146 (473)
......... ++++++.--... .......++++|+.+.+-+.+.. ...+..+....- +
T Consensus 124 ~~~~~~~~~~~dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~g~~~~l~~----~~~~~~~~~~sp~d 199 (388)
T 3pe7_A 124 WVGYGTWVANSDCTKLVGIEIRREDWVPLTDWKKFHEFYFTKPCCRLMRVDLKTGESTVILQ----ENQWLGHPIYRPYD 199 (388)
T ss_dssp EEEEEEEEECTTSSEEEEEEEEGGGCCCCCSHHHHHHHGGGCCCEEEEEEETTTCCEEEEEE----ESSCEEEEEEETTE
T ss_pred cccccceeECCCCCeeccccccCcccccccccchhhhhhccCCcceEEEEECCCCceEEeec----CCccccccEECCCC
Confidence 222222222 333333110000 01123679999999988766653 112233333333 4
Q ss_pred CEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 147 KNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 147 ~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
++.+++............+|.+|+.....+.+..
T Consensus 200 g~~l~~~~~~~~~~~~~~l~~~d~~~~~~~~l~~ 233 (388)
T 3pe7_A 200 DSTVAFCHEGPHDLVDARMWLINEDGTNMRKVKT 233 (388)
T ss_dssp EEEEEEEECSCTTTSSCSEEEEETTSCCCEESCC
T ss_pred CCEEEEEEecCCCCCcceEEEEeCCCCceEEeee
Confidence 5544443322222234679999998877666543
No 47
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=90.55 E-value=14 Score=36.43 Aligned_cols=155 Identities=17% Similarity=0.133 Sum_probs=78.1
Q ss_pred ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEE
Q 011998 38 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 38 ~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
.++..++.|+.+ ..+.+||+.+.+-...-.. ......+...++.+++.|+.+ ..+.+|
T Consensus 287 ~~~~~l~~~~~d-----------~~i~i~d~~~~~~~~~~~~-----~~~~v~~~~~~~~~l~~~~~d------g~i~vw 344 (445)
T 2ovr_B 287 FDGIHVVSGSLD-----------TSIRVWDVETGNCIHTLTG-----HQSLTSGMELKDNILVSGNAD------STVKIW 344 (445)
T ss_dssp ECSSEEEEEETT-----------SCEEEEETTTCCEEEEECC-----CCSCEEEEEEETTEEEEEETT------SCEEEE
T ss_pred ECCCEEEEEeCC-----------CeEEEEECCCCCEEEEEcC-----CcccEEEEEEeCCEEEEEeCC------CeEEEE
Confidence 366666666642 3588889887654322111 111122333455566677654 347889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEec
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 197 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~ 197 (473)
|..+.+-...-. ........-.++.+++.+++.|+.+ ..+.+||+.+.+....-.............+..+
T Consensus 345 d~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~l~s~~~d------g~v~iwd~~~~~~~~~~~~~~~~~~~~~v~~~~~- 415 (445)
T 2ovr_B 345 DIKTGQCLQTLQ--GPNKHQSAVTCLQFNKNFVITSSDD------GTVKLWDLKTGEFIRNLVTLESGGSGGVVWRIRA- 415 (445)
T ss_dssp ETTTCCEEEEEC--STTSCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEECTTGGGTCEEEEEEE-
T ss_pred ECCCCcEEEEEc--cCCCCCCCEEEEEECCCEEEEEeCC------CeEEEEECCCCceeeeeeccccCCCCceEEEEEe-
Confidence 987765432221 0111222233444566777777752 3589999988765433211010111111122222
Q ss_pred cccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 198 PLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 198 ~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
..++.+++.|+.++... ..++++|..
T Consensus 416 -s~~~~~la~~~~dg~~~--~~l~v~df~ 441 (445)
T 2ovr_B 416 -SNTKLVCAVGSRNGTEE--TKLLVLDFD 441 (445)
T ss_dssp -CSSEEEEEEECSSSSSC--CEEEEEECC
T ss_pred -cCCEEEEEEcccCCCCc--cEEEEEECC
Confidence 24667778887765422 235555544
No 48
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=90.54 E-value=11 Score=40.29 Aligned_cols=196 Identities=8% Similarity=0.024 Sum_probs=98.9
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCC-----CCCCCceeeCeEEEEECCCCeEE--Eee
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKS-----SNTNDEVYYNDLYILNTETFVWK--RAT 77 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~-----~~~~~~~~~~dv~~yd~~t~~W~--~l~ 77 (473)
.++++|..+++...... +..+.. .++.. +++.++++..... ...........+|++++.+...+ .+.
T Consensus 152 ~i~v~d~~tg~~~~~~~----~~~~~~-~~~wspDg~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~l~t~~~~~~~v~ 226 (710)
T 2xdw_A 152 TIKFMKVDGAKELPDVL----ERVKFS-CMAWTHDGKGMFYNAYPQQDGKSDGTETSTNLHQKLYYHVLGTDQSEDILCA 226 (710)
T ss_dssp EEEEEETTTTEEEEEEE----EEECSC-CEEECTTSSEEEEEECCCCSSCCSSSCCCCCCCCEEEEEETTSCGGGCEEEE
T ss_pred EEEEEECCCCCCCcccc----cCcccc-eEEEEeCCCEEEEEEECCccccccccccccCCCCEEEEEECCCCcccceEEe
Confidence 68899999988876422 111111 22232 4544444443211 00011123457999999887532 222
Q ss_pred cCCCCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCC------C--CEEEeeCCCCCCCCcceeEEEEECCE
Q 011998 78 TSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDT------L--TWKELNTSGMVLSPRAGHSTVAFGKN 148 (473)
Q Consensus 78 ~~g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t------~--~W~~l~~~g~~p~~R~~hs~~~~~~~ 148 (473)
... ..+....+... -+++.++++...+.. ..+++|++|+.+ . .|..+... ...........++.
T Consensus 227 ~~~--~~~~~~~~~~~SpDg~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~~~~~~l~~~----~~~~~~~~s~dg~~ 299 (710)
T 2xdw_A 227 EFP--DEPKWMGGAELSDDGRYVLLSIREGCD-PVNRLWYCDLQQESNGITGILKWVKLIDN----FEGEYDYVTNEGTV 299 (710)
T ss_dssp CCT--TCTTCEEEEEECTTSCEEEEEEECSSS-SCCEEEEEEGGGSSSSSCSSCCCEEEECS----SSSCEEEEEEETTE
T ss_pred ccC--CCCeEEEEEEEcCCCCEEEEEEEccCC-CccEEEEEECcccccccCCccceEEeeCC----CCcEEEEEeccCCE
Confidence 211 11222223322 245444444332221 257899999876 4 68877641 11111222334677
Q ss_pred EEEEecccCCCCccccEEEEeCCCC---cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEc
Q 011998 149 LFVFGGFTDSQNLYDDLYMIDVDSG---LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 225 (473)
Q Consensus 149 LyV~GG~~~~~~~~ndv~~yd~~t~---~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~ 225 (473)
||+.+... .....++.+|+.+. .|+.+... ........+.+. .++.+++....+. ...+|.++.
T Consensus 300 l~~~s~~~---~~~~~l~~~d~~~~~~~~~~~l~~~----~~~~~~~~~~~~--~~~~lv~~~~~~g----~~~l~~~~~ 366 (710)
T 2xdw_A 300 FTFKTNRH---SPNYRLINIDFTDPEESKWKVLVPE----HEKDVLEWVACV--RSNFLVLCYLHDV----KNTLQLHDL 366 (710)
T ss_dssp EEEEECTT---CTTCEEEEEETTSCCGGGCEEEECC----CSSCEEEEEEEE--TTTEEEEEEEETT----EEEEEEEET
T ss_pred EEEEECCC---CCCCEEEEEeCCCCCcccceeccCC----CCCCeEEEEEEE--cCCEEEEEEEECC----EEEEEEEEC
Confidence 88876542 23457999999876 59888652 121112222221 3677776654332 345778876
Q ss_pred c
Q 011998 226 G 226 (473)
Q Consensus 226 ~ 226 (473)
.
T Consensus 367 ~ 367 (710)
T 2xdw_A 367 A 367 (710)
T ss_dssp T
T ss_pred C
Confidence 3
No 49
>3jrp_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum; 2.60A {Saccharomyces cerevisiae}
Probab=90.50 E-value=12 Score=35.38 Aligned_cols=179 Identities=9% Similarity=0.033 Sum_probs=89.8
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE--C--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
.+.+||....++..+..... . ...-..+.. + +.+++.|+.+ ..+.+||+.+.+|..+....
T Consensus 34 ~i~iw~~~~~~~~~~~~~~~-h--~~~v~~~~~~~~~~~~~l~s~~~d-----------g~v~iwd~~~~~~~~~~~~~- 98 (379)
T 3jrp_A 34 TIKIFEVEGETHKLIDTLTG-H--EGPVWRVDWAHPKFGTILASCSYD-----------GKVLIWKEENGRWSQIAVHA- 98 (379)
T ss_dssp CEEEEEEETTEEEEEEEECC-C--SSCEEEEEECCGGGCSEEEEEETT-----------SCEEEEEEETTEEEEEEEEC-
T ss_pred cEEEEecCCCcceeeeEecC-C--CCcEEEEEeCCCCCCCEEEEeccC-----------CEEEEEEcCCCceeEeeeec-
Confidence 47777777666655432111 1 111122222 2 5677777742 35888999999887665442
Q ss_pred CCCCceeeEEEEE--C--CEEEEEeCCCCCCCccceEEEEECCCCCE-EEeeCCCCCCCCcceeEEEEE-----------
Q 011998 82 PPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF----------- 145 (473)
Q Consensus 82 ~P~~R~~hs~~~~--~--~~IyV~GG~~~~~~~~ndv~~yD~~t~~W-~~l~~~g~~p~~R~~hs~~~~----------- 145 (473)
.......++.+ + +.+++.|+.+ ..+.+||..+... ..... ......-.+++..
T Consensus 99 --~~~~~v~~~~~~~~~~~~~l~~~~~d------~~i~v~d~~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~ 167 (379)
T 3jrp_A 99 --VHSASVNSVQWAPHEYGPLLLVASSD------GKVSVVEFKENGTTSPIII---DAHAIGVNSASWAPATIEEDGEHN 167 (379)
T ss_dssp --CCSSCEEEEEECCGGGCSEEEEEETT------SEEEEEECCTTSCCCEEEE---ECCTTCEEEEEECCCC--------
T ss_pred --CCCcceEEEEeCCCCCCCEEEEecCC------CcEEEEecCCCCceeeEEe---cCCCCceEEEEEcCcccccccccc
Confidence 11222333333 3 5677777754 3577888876632 11111 0011111222222
Q ss_pred ---CCEEEEEecccCCCCccccEEEEeCCCC--cEEEEeeCCCCCCCcceeeEEEeccccC---CEEEEEcccCCCCCcc
Q 011998 146 ---GKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKVITTGEGPSARFSVAGDCLDPLKG---GVLVFIGGCNKSLEAL 217 (473)
Q Consensus 146 ---~~~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~~~~a~~~~~~~~---~~l~v~GG~~~~~~~~ 217 (473)
++.+++.|+.+ ..+.+||+.+. .|..+...... .....+..+. .+ +.+++.|+.+..
T Consensus 168 ~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~h---~~~v~~~~~s--p~~~~~~~l~s~~~dg~---- 232 (379)
T 3jrp_A 168 GTKESRKFVTGGAD------NLVKIWKYNSDAQTYVLESTLEGH---SDWVRDVAWS--PTVLLRSYLASVSQDRT---- 232 (379)
T ss_dssp --CTTCEEEEEETT------SCEEEEEEETTTTEEEEEEEECCC---SSCEEEEEEC--CCCSSSEEEEEEETTSC----
T ss_pred CCCCCCEEEEEeCC------CeEEEEEecCCCcceeeEEEEecc---cCcEeEEEEC--CCCCCCCeEEEEeCCCE----
Confidence 35677777753 24788887654 35554432111 1112223332 34 688888886653
Q ss_pred CcEEEEEccc
Q 011998 218 DDMYYLYTGL 227 (473)
Q Consensus 218 ~dv~~ld~~~ 227 (473)
+.+++...
T Consensus 233 --i~iwd~~~ 240 (379)
T 3jrp_A 233 --CIIWTQDN 240 (379)
T ss_dssp --EEEEEESS
T ss_pred --EEEEeCCC
Confidence 55566544
No 50
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=90.45 E-value=5.8 Score=38.12 Aligned_cols=173 Identities=14% Similarity=0.211 Sum_probs=84.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+.++|..+..|............ .-.+++. .++..++.|+.+ ..+.+||..+..++.+.... .
T Consensus 39 ~i~iw~~~~~~~~~~~~~~~~h~~-~v~~~~~sp~g~~l~s~s~D-----------~~v~iw~~~~~~~~~~~~~~---~ 103 (345)
T 3fm0_A 39 RIRIWGTEGDSWICKSVLSEGHQR-TVRKVAWSPCGNYLASASFD-----------ATTCIWKKNQDDFECVTTLE---G 103 (345)
T ss_dssp CEEEEEEETTEEEEEEEECSSCSS-CEEEEEECTTSSEEEEEETT-----------SCEEEEEECCC-EEEEEEEC---C
T ss_pred eEEEEEcCCCcceeeeeeccccCC-cEEEEEECCCCCEEEEEECC-----------CcEEEEEccCCCeEEEEEcc---C
Confidence 467777777777533211111111 1112222 246677777742 34677787777665544321 1
Q ss_pred CceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCC
Q 011998 85 ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQ 159 (473)
Q Consensus 85 ~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~ 159 (473)
....-.++.+ ++.+++.|+.++ .+.+||+.+.. +..+.. +......-..+.+ ++.+++.|+.+
T Consensus 104 h~~~v~~v~~sp~~~~l~s~s~D~------~v~iwd~~~~~~~~~~~~---~~~h~~~v~~~~~~p~~~~l~s~s~d--- 171 (345)
T 3fm0_A 104 HENEVKSVAWAPSGNLLATCSRDK------SVWVWEVDEEDEYECVSV---LNSHTQDVKHVVWHPSQELLASASYD--- 171 (345)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTS------CEEEEEECTTSCEEEEEE---ECCCCSCEEEEEECSSSSCEEEEETT---
T ss_pred CCCCceEEEEeCCCCEEEEEECCC------eEEEEECCCCCCeEEEEE---ecCcCCCeEEEEECCCCCEEEEEeCC---
Confidence 1112223333 577788887654 36777776543 333322 1111111122222 35566777652
Q ss_pred CccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC
Q 011998 160 NLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 213 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~ 213 (473)
..+.+||..+..|..+...... .....++.+. .++.+++.|+.+..
T Consensus 172 ---~~i~~w~~~~~~~~~~~~~~~h---~~~v~~l~~s--p~g~~l~s~s~D~~ 217 (345)
T 3fm0_A 172 ---DTVKLYREEEDDWVCCATLEGH---ESTVWSLAFD--PSGQRLASCSDDRT 217 (345)
T ss_dssp ---SCEEEEEEETTEEEEEEEECCC---SSCEEEEEEC--TTSSEEEEEETTSC
T ss_pred ---CcEEEEEecCCCEEEEEEecCC---CCceEEEEEC--CCCCEEEEEeCCCe
Confidence 2478888888888755432111 1111222232 35667777776653
No 51
>1k8k_C P40, ARP2/3 complex 41 kDa subunit, P41-ARC; beta-propeller, structural protein; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1tyq_C* 1u2v_C* 2p9i_C* 2p9k_C* 2p9l_C 2p9n_C* 2p9p_C* 2p9s_C* 2p9u_C* 3rse_C 3dxm_C* 3dxk_C
Probab=90.29 E-value=5.6 Score=37.77 Aligned_cols=150 Identities=13% Similarity=0.120 Sum_probs=77.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceee-EEEEE-CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSH-TCSSW-KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~h-s~~~~-~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.++++|+. ...+.+||..+.+|+.+.... .....- +++.. ++.+++.|+.+ ..+.+
T Consensus 19 ~~~~l~~~~~-----------d~~v~i~~~~~~~~~~~~~~~---~h~~~v~~~~~~~~~~~l~~~~~d------g~i~v 78 (372)
T 1k8k_C 19 DRTQIAICPN-----------NHEVHIYEKSGNKWVQVHELK---EHNGQVTGVDWAPDSNRIVTCGTD------RNAYV 78 (372)
T ss_dssp TSSEEEEECS-----------SSEEEEEEEETTEEEEEEEEE---CCSSCEEEEEEETTTTEEEEEETT------SCEEE
T ss_pred CCCEEEEEeC-----------CCEEEEEeCCCCcEEeeeeec---CCCCcccEEEEeCCCCEEEEEcCC------CeEEE
Confidence 4567777774 246889999998776654431 111122 22222 56777777754 34788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCc-EEEEeeCCCCCCCcceeeEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITTGEGPSARFSVAGD 194 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~-W~~v~~~g~~P~~R~~~~a~ 194 (473)
||..+.++...... ......-.++... ++++++.|+.. ..+.+||+.... |....... .+... ...+.
T Consensus 79 wd~~~~~~~~~~~~--~~~~~~v~~~~~~~~~~~l~~~~~d------~~v~i~d~~~~~~~~~~~~~~-~~~~~-~i~~~ 148 (372)
T 1k8k_C 79 WTLKGRTWKPTLVI--LRINRAARCVRWAPNEKKFAVGSGS------RVISICYFEQENDWWVCKHIK-KPIRS-TVLSL 148 (372)
T ss_dssp EEEETTEEEEEEEC--CCCSSCEEEEEECTTSSEEEEEETT------SSEEEEEEETTTTEEEEEEEC-TTCCS-CEEEE
T ss_pred EECCCCeeeeeEEe--ecCCCceeEEEECCCCCEEEEEeCC------CEEEEEEecCCCcceeeeeee-cccCC-CeeEE
Confidence 88888877655431 1111122222222 45566777652 236677665543 44333221 11111 12222
Q ss_pred EeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 195 CLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 195 ~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
.+. .++.+++.|+.+. .+..+|..
T Consensus 149 ~~~--~~~~~l~~~~~dg------~i~~~d~~ 172 (372)
T 1k8k_C 149 DWH--PNSVLLAAGSCDF------KCRIFSAY 172 (372)
T ss_dssp EEC--TTSSEEEEEETTS------CEEEEECC
T ss_pred EEc--CCCCEEEEEcCCC------CEEEEEcc
Confidence 222 3566777777654 36666654
No 52
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.28 E-value=12 Score=35.12 Aligned_cols=142 Identities=13% Similarity=0.042 Sum_probs=73.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
..+++||+.+.+-...-. .. ...-+.++.. ++.+|+... .+.+++||+.+.+-......+..
T Consensus 164 ~~i~~~d~~~~~~~~~~~---~~-~~~~~~~~~s~dg~~l~~~~~------------~~~i~~~d~~~~~~~~~~~~~~~ 227 (353)
T 3vgz_A 164 SVIWVVDGGNIKLKTAIQ---NT-GKMSTGLALDSEGKRLYTTNA------------DGELITIDTADNKILSRKKLLDD 227 (353)
T ss_dssp CEEEEEETTTTEEEEEEC---CC-CTTCCCCEEETTTTEEEEECT------------TSEEEEEETTTTEEEEEEECCCS
T ss_pred ceEEEEcCCCCceEEEec---CC-CCccceEEECCCCCEEEEEcC------------CCeEEEEECCCCeEEEEEEcCCC
Confidence 348888888775543321 01 1111222332 346666543 14688999988764433222111
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEEC-CEEEEEecccCCC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFGGFTDSQ 159 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~-~~LyV~GG~~~~~ 159 (473)
.......+++.. ++.+|+... ..+.+++||+.+.+....-. .+.+ .+.+..-+ +.+|+.+..
T Consensus 228 ~~~~~~~~~~~s~dg~~l~~~~~------~~~~v~~~d~~~~~~~~~~~---~~~~--~~~~~s~dg~~l~v~~~~---- 292 (353)
T 3vgz_A 228 GKEHFFINISLDTARQRAFITDS------KAAEVLVVDTRNGNILAKVA---APES--LAVLFNPARNEAYVTHRQ---- 292 (353)
T ss_dssp SSCCCEEEEEEETTTTEEEEEES------SSSEEEEEETTTCCEEEEEE---CSSC--CCEEEETTTTEEEEEETT----
T ss_pred CCCcccceEEECCCCCEEEEEeC------CCCEEEEEECCCCcEEEEEE---cCCC--ceEEECCCCCEEEEEECC----
Confidence 111122223333 456777653 23679999998887654433 2222 12222223 457776543
Q ss_pred CccccEEEEeCCCCcEEEEe
Q 011998 160 NLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~W~~v~ 179 (473)
.+.+.+||+.+.+....-
T Consensus 293 --~~~v~~~d~~~~~~~~~~ 310 (353)
T 3vgz_A 293 --AGKVSVIDAKSYKVVKTF 310 (353)
T ss_dssp --TTEEEEEETTTTEEEEEE
T ss_pred --CCeEEEEECCCCeEEEEE
Confidence 146999999887655443
No 53
>3vgz_A Uncharacterized protein YNCE; beta-propeller, protein binding; 1.70A {Escherichia coli} PDB: 3vh0_A*
Probab=90.21 E-value=12 Score=35.08 Aligned_cols=183 Identities=8% Similarity=-0.002 Sum_probs=91.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCC-----cccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEee
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPE-----AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT 77 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~-----~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~ 77 (473)
+.+++||+.+.+-...-..+.... +..-+.++.. ++.+|+.+... ...+++||+.+.+-....
T Consensus 111 ~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~~----------~~~i~~~d~~~~~~~~~~ 180 (353)
T 3vgz_A 111 SAVTAIDAKTGEVKGRLVLDDRKRTEEVRPLQPRELVADDATNTVYISGIGK----------ESVIWVVDGGNIKLKTAI 180 (353)
T ss_dssp TEEEEEETTTCCEEEEEESCCCCCCSSCCCCEEEEEEEETTTTEEEEEEESS----------SCEEEEEETTTTEEEEEE
T ss_pred CEEEEEeCCCCeeEEEEecCCCccccccCCCCCceEEECCCCCEEEEEecCC----------CceEEEEcCCCCceEEEe
Confidence 468899988876432211111111 1112334443 35677776321 246999999887654433
Q ss_pred c-CCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEE
Q 011998 78 T-SGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVF 152 (473)
Q Consensus 78 ~-~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~ 152 (473)
. .+..| +.++.. ++.+|+... -+.+++||+.+.+-......+..........++.. ++.+|+.
T Consensus 181 ~~~~~~~-----~~~~~s~dg~~l~~~~~-------~~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~ 248 (353)
T 3vgz_A 181 QNTGKMS-----TGLALDSEGKRLYTTNA-------DGELITIDTADNKILSRKKLLDDGKEHFFINISLDTARQRAFIT 248 (353)
T ss_dssp CCCCTTC-----CCCEEETTTTEEEEECT-------TSEEEEEETTTTEEEEEEECCCSSSCCCEEEEEEETTTTEEEEE
T ss_pred cCCCCcc-----ceEEECCCCCEEEEEcC-------CCeEEEEECCCCeEEEEEEcCCCCCCcccceEEECCCCCEEEEE
Confidence 2 22111 222222 456666532 25788999988764433221111111122223333 3457665
Q ss_pred ecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 153 GGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 153 GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
... .+.+++||+.+.+.......+ .+. . ..+.+ .++.+|+.+..+ +.++.+|..+.+
T Consensus 249 ~~~------~~~v~~~d~~~~~~~~~~~~~---~~~---~-~~~s~-dg~~l~v~~~~~------~~v~~~d~~~~~ 305 (353)
T 3vgz_A 249 DSK------AAEVLVVDTRNGNILAKVAAP---ESL---A-VLFNP-ARNEAYVTHRQA------GKVSVIDAKSYK 305 (353)
T ss_dssp ESS------SSEEEEEETTTCCEEEEEECS---SCC---C-EEEET-TTTEEEEEETTT------TEEEEEETTTTE
T ss_pred eCC------CCEEEEEECCCCcEEEEEEcC---CCc---e-EEECC-CCCEEEEEECCC------CeEEEEECCCCe
Confidence 432 256999999888765444322 121 1 22211 245677765433 357888876543
No 54
>4a2l_A BT_4663, two-component system sensor histidine kinase/RESP; transcription, beta-propeller; HET: PGE PG4 MES 2PE; 2.60A {Bacteroides thetaiotaomicron} PDB: 4a2m_A*
Probab=89.94 E-value=21 Score=38.73 Aligned_cols=144 Identities=9% Similarity=0.090 Sum_probs=78.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+-+.+||+.+.++.........+......-+..-++.|++... +.+++||..+.++..+... .+.
T Consensus 107 ~Gl~~yd~~~~~f~~~~~~~~~~~~~i~~i~~d~~g~lwi~t~-------------~gl~~~~~~~~~~~~~~~~--~~~ 171 (795)
T 4a2l_A 107 DGLSRYDEEKDIFQNFFYEKNGKHLQVNGIEEISPEQLLISTP-------------EGLIMFDIKESKFIDDSFS--TAM 171 (795)
T ss_dssp SCEEEEETTTTEEEEECCEETTEECCCCEEEEEETTEEEEEET-------------TEEEEEETTTTEEECSSSC--HHH
T ss_pred CchheeCCCCCeEEeccccccCCCceEEEEEECCCCCEEEEEC-------------CceEEEECCCCEEEeccCC--CCC
Confidence 3578899988888765321111100011122223677877533 3589999998887655321 011
Q ss_pred CceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~~~ 162 (473)
...-.++.. -++.|||.. . -..+++||+.+.++..... .+....-.+... -++.|+|.. . .
T Consensus 172 ~~~i~~i~~d~~g~lwigt-~------~~Gl~~~~~~~~~~~~~~~---~~~~~~i~~i~~d~~g~lwigt-~------~ 234 (795)
T 4a2l_A 172 HKTIASTLYRQGDQIYIGT-S------TDGLYTYSITQKTFEKVIP---ILGTKQIQAILQQSPTRIWVAT-E------G 234 (795)
T ss_dssp HTCCEEEEEEETTEEEEEE-S------SSCEEEEETTTCCEEECC-------CCCEEEEEEEETTEEEEEE-B------S
T ss_pred CcceEEEEECCCCCEEEEE-C------CCCEEEEeCCCCeEEEecC---CCCCCeeEEEEEcCCCCEEEEE-C------C
Confidence 110122322 378888832 1 1358899999999887642 111111122222 356777642 1 1
Q ss_pred ccEEEEeCCCCcEEEEee
Q 011998 163 DDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~ 180 (473)
+.+++||+.+.+++....
T Consensus 235 ~Gl~~~~~~~~~~~~~~~ 252 (795)
T 4a2l_A 235 AGLFLINPKTKEIKNYLH 252 (795)
T ss_dssp SCEEEEETTTTEEEEECC
T ss_pred CCeEEEeCCCCeEEEeec
Confidence 238999999988887754
No 55
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=89.92 E-value=12 Score=34.62 Aligned_cols=189 Identities=11% Similarity=0.078 Sum_probs=90.5
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEe-ecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA-TTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l-~~~g~ 81 (473)
+.+++||+.+.++..............-++++.. + +++|+.... +.+++||+. .+...+ .....
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~------------~~l~~~d~~-g~~~~~~~~~~~ 112 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR------------LGLLVVQTD-GTFEEIAKKDSE 112 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT------------TEEEEEETT-SCEEECCSBCTT
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC------------CCEEEEeCC-CCEEEEEeccCC
Confidence 3588899888887755320000011112233332 4 688887641 258999998 777665 32211
Q ss_pred CCCCceeeEEEEE-CCEEEEEeCCCC---------CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE----C-
Q 011998 82 PPSARDSHTCSSW-KNKIIVIGGEDG---------HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----G- 146 (473)
Q Consensus 82 ~P~~R~~hs~~~~-~~~IyV~GG~~~---------~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~----~- 146 (473)
......-+.++.. ++.+|+...... .......+++||+. .+...+... ...+ ...+.. .
T Consensus 113 ~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~~--~~~~---~~i~~~~~~d~d 186 (314)
T 1pjx_A 113 GRRMQGCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVDTA--FQFP---NGIAVRHMNDGR 186 (314)
T ss_dssp SCBCBCCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEEEE--ESSE---EEEEEEECTTSC
T ss_pred CccccCCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEeccC--CCCc---ceEEEecccCCC
Confidence 0001112333333 678888654321 11123579999987 666554320 1111 233333 2
Q ss_pred C-EEEEEecccCCCCccccEEEEeCC-CCcEEEEeeCCCCCCCc-ceeeEEEeccccCCEEEEEcccCCCCCccCcEEEE
Q 011998 147 K-NLFVFGGFTDSQNLYDDLYMIDVD-SGLWTKVITTGEGPSAR-FSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYL 223 (473)
Q Consensus 147 ~-~LyV~GG~~~~~~~~ndv~~yd~~-t~~W~~v~~~g~~P~~R-~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~l 223 (473)
+ .||+.... .+.+++||+. +.++.........+... ....+.+++ .++.||+....+ +.+++|
T Consensus 187 g~~l~v~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~~~~p~~i~~d--~~G~l~v~~~~~------~~i~~~ 252 (314)
T 1pjx_A 187 PYQLIVAETP------TKKLWSYDIKGPAKIENKKVWGHIPGTHEGGADGMDFD--EDNNLLVANWGS------SHIEVF 252 (314)
T ss_dssp EEEEEEEETT------TTEEEEEEEEETTEEEEEEEEEECCCCSSCEEEEEEEB--TTCCEEEEEETT------TEEEEE
T ss_pred CCEEEEEECC------CCeEEEEECCCCCccccceEEEECCCCCCCCCCceEEC--CCCCEEEEEcCC------CEEEEE
Confidence 3 46665432 2458899876 44443221110111111 112233443 356777764221 246777
Q ss_pred Ecc
Q 011998 224 YTG 226 (473)
Q Consensus 224 d~~ 226 (473)
+..
T Consensus 253 d~~ 255 (314)
T 1pjx_A 253 GPD 255 (314)
T ss_dssp CTT
T ss_pred cCC
Confidence 765
No 56
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=89.84 E-value=13 Score=34.67 Aligned_cols=149 Identities=16% Similarity=0.143 Sum_probs=74.9
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+.+-...-.. ....-....+ ++.+++.|+.++ .+.+
T Consensus 118 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~l~~~~~d~------~i~~ 175 (312)
T 4ery_A 118 QSNLIVSGSFD-----------ESVRIWDVKTGKCLKTLPA-----HSDPVSAVHFNRDGSLIVSSSYDG------LCRI 175 (312)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CcEEEEECCCCEEEEEecC-----CCCcEEEEEEcCCCCEEEEEeCCC------cEEE
Confidence 35666777742 3588899987754332211 1111222333 567778887543 4788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDC 195 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~ 195 (473)
||+.+.+....-.. ...+. -..++.. +++.++.|+.. +.+.+||+.+.+-...-. +.............
T Consensus 176 wd~~~~~~~~~~~~--~~~~~-~~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~ 245 (312)
T 4ery_A 176 WDTASGQCLKTLID--DDNPP-VSFVKFSPNGKYILAATLD------NTLKLWDYSKGKCLKTYT-GHKNEKYCIFANFS 245 (312)
T ss_dssp EETTTCCEEEEECC--SSCCC-EEEEEECTTSSEEEEEETT------TEEEEEETTTTEEEEEEC-SSCCSSSCCCEEEE
T ss_pred EECCCCceeeEEec--cCCCc-eEEEEECCCCCEEEEEcCC------CeEEEEECCCCcEEEEEE-ecCCceEEEEEEEE
Confidence 99888765433211 01111 1112222 35566666642 358899998775333221 11111111111122
Q ss_pred eccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 196 LDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 196 ~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
. .++.+++.|+.+.. +.++|....
T Consensus 246 ~---~~~~~l~sg~~dg~------i~vwd~~~~ 269 (312)
T 4ery_A 246 V---TGGKWIVSGSEDNL------VYIWNLQTK 269 (312)
T ss_dssp C---SSSCEEEECCTTSC------EEEEETTTC
T ss_pred e---CCCcEEEEECCCCE------EEEEECCCc
Confidence 1 35677777876653 666776543
No 57
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=89.57 E-value=13 Score=39.24 Aligned_cols=194 Identities=11% Similarity=0.033 Sum_probs=96.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEE-ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC-eEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAAL-VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~-~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~~~g~~ 82 (473)
..++++|..+.+-..+... . .....-..+.. -+++.++++..+. ......++++|+.+. .+..+.....
T Consensus 235 ~~l~~~d~~~~~~~~~~~~-~-~~~~~~~~~~~spdg~~l~~~~~~~------~~~~~~v~~~d~~~g~~~~~~~~~~~- 305 (706)
T 2z3z_A 235 VTVGIYHLATGKTVYLQTG-E-PKEKFLTNLSWSPDENILYVAEVNR------AQNECKVNAYDAETGRFVRTLFVETD- 305 (706)
T ss_dssp EEEEEEETTTTEEEECCCC-S-CTTCEEEEEEECTTSSEEEEEEECT------TSCEEEEEEEETTTCCEEEEEEEEEC-
T ss_pred eEEEEEECCCCceEeeccC-C-CCceeEeeEEEECCCCEEEEEEeCC------CCCeeEEEEEECCCCceeeEEEEccC-
Confidence 5689999998887665321 1 11111112222 2455444444321 112357999999998 7766542211
Q ss_pred CCCc--eeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CC-EEEEEecc
Q 011998 83 PSAR--DSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GK-NLFVFGGF 155 (473)
Q Consensus 83 P~~R--~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~-~LyV~GG~ 155 (473)
.... .......- ++++++.+..++ ...+|.+|........+.. -... ......+ ++ .||+.+..
T Consensus 306 ~~~~~~~~~~~~sp~~dg~~l~~~~~~g----~~~l~~~~~~~~~~~~l~~---~~~~--v~~~~~~spdg~~l~~~~~~ 376 (706)
T 2z3z_A 306 KHYVEPLHPLTFLPGSNNQFIWQSRRDG----WNHLYLYDTTGRLIRQVTK---GEWE--VTNFAGFDPKGTRLYFESTE 376 (706)
T ss_dssp SSCCCCCSCCEECTTCSSEEEEEECTTS----SCEEEEEETTSCEEEECCC---SSSC--EEEEEEECTTSSEEEEEESS
T ss_pred CCeECccCCceeecCCCCEEEEEEccCC----ccEEEEEECCCCEEEecCC---CCeE--EEeeeEEcCCCCEEEEEecC
Confidence 1000 01112223 677666665543 3678999977776666642 1111 1121222 33 45555443
Q ss_pred cCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 156 TDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 156 ~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
.......+|.+|+.+...+.+... ... + .+.+. .+++.+++...+. ..-.+++.++....+
T Consensus 377 --~~~~~~~l~~~d~~~~~~~~l~~~-----~~~-~-~~~~s--pdg~~l~~~~~~~--~~p~~i~l~d~~~~~ 437 (706)
T 2z3z_A 377 --ASPLERHFYCIDIKGGKTKDLTPE-----SGM-H-RTQLS--PDGSAIIDIFQSP--TVPRKVTVTNIGKGS 437 (706)
T ss_dssp --SCTTCBEEEEEETTCCCCEESCCS-----SSE-E-EEEEC--TTSSEEEEEEECS--SCSCEEEEEESSSCE
T ss_pred --CCCceEEEEEEEcCCCCceeccCC-----Cce-E-EEEEC--CCCCEEEEEecCC--CCCcEEEEEECCCCe
Confidence 222235699999988776655421 111 2 22222 3455555543322 233568888876543
No 58
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=89.45 E-value=14 Score=34.61 Aligned_cols=184 Identities=12% Similarity=-0.017 Sum_probs=86.3
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC-CC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG-NP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g-~~ 82 (473)
+.+++||+.+........ + .+.. +++.. ++++|+..+ +.+++||+.+.+++.+.... ..
T Consensus 35 ~~i~~~d~~~~~~~~~~~----~-~~~~-~i~~~~dG~l~v~~~-------------~~l~~~d~~~g~~~~~~~~~~~~ 95 (297)
T 3g4e_A 35 KKVCRWDSFTKQVQRVTM----D-APVS-SVALRQSGGYVATIG-------------TKFCALNWKEQSAVVLATVDNDK 95 (297)
T ss_dssp TEEEEEETTTCCEEEEEC----S-SCEE-EEEEBTTSSEEEEET-------------TEEEEEETTTTEEEEEEECCTTC
T ss_pred CEEEEEECCCCcEEEEeC----C-CceE-EEEECCCCCEEEEEC-------------CeEEEEECCCCcEEEEEecCCCC
Confidence 356777777765543321 1 1111 22222 456655432 36899999999988775431 11
Q ss_pred CCCceeeEEEEECCEEEEEeCCCC-----CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecc
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDG-----HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGF 155 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~-----~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~ 155 (473)
+..|....++.-+++||+-.-... .......+|++|+.. +...+.. ....+ ...+.. ++ .||+....
T Consensus 96 ~~~~~~di~~d~dG~l~~~~~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~--~~~~p---ngi~~spdg~~lyv~~~~ 169 (297)
T 3g4e_A 96 KNNRFNDGKVDPAGRYFAGTMAEETAPAVLERHQGALYSLFPDH-HVKKYFD--QVDIS---NGLDWSLDHKIFYYIDSL 169 (297)
T ss_dssp SSEEEEEEEECTTSCEEEEEEECCSBTTBCCTTCEEEEEECTTS-CEEEEEE--EESBE---EEEEECTTSCEEEEEEGG
T ss_pred CCCCCCCEEECCCCCEEEecCCcccccccccCCCcEEEEEECCC-CEEEEee--ccccc---cceEEcCCCCEEEEecCC
Confidence 222222222222677776321111 011235789998753 4333322 01111 223332 33 57777543
Q ss_pred cCCCCccccEEEEeC--CCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 156 TDSQNLYDDLYMIDV--DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 156 ~~~~~~~ndv~~yd~--~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
.+.+++||+ .+............+......-++.++ .++.||+..... +.+++|+..+
T Consensus 170 ------~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d--~~G~lwva~~~~------~~v~~~d~~t 229 (297)
T 3g4e_A 170 ------SYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCID--AEGKLWVACYNG------GRVIRLDPVT 229 (297)
T ss_dssp ------GTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEB--TTSCEEEEEETT------TEEEEECTTT
T ss_pred ------CCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEEC--CCCCEEEEEcCC------CEEEEEcCCC
Confidence 245888876 455543211100111111122334443 356777764211 2377888764
No 59
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=88.47 E-value=16 Score=34.07 Aligned_cols=133 Identities=9% Similarity=0.011 Sum_probs=68.6
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CC-EEEEEecCCCCCCCCCceeeCeEEEEECCCCeE-EEeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~g~ 81 (473)
+.+.+||+.+.+....... + .....++.. ++ .+|+.+.. ...+++||+.+.+. ......+.
T Consensus 20 ~~v~~~d~~~~~~~~~~~~---~--~~~~~~~~s~dg~~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~~~~ 83 (331)
T 3u4y_A 20 RRISFFSTDTLEILNQITL---G--YDFVDTAITSDCSNVVVTSDF-----------CQTLVQIETQLEPPKVVAIQEGQ 83 (331)
T ss_dssp TEEEEEETTTCCEEEEEEC---C--CCEEEEEECSSSCEEEEEEST-----------TCEEEEEECSSSSCEEEEEEECS
T ss_pred CeEEEEeCcccceeeeEEc---c--CCcceEEEcCCCCEEEEEeCC-----------CCeEEEEECCCCceeEEecccCC
Confidence 4688999998888654321 1 111122222 34 57777662 13799999988764 22222221
Q ss_pred CCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecccC
Q 011998 82 PPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTD 157 (473)
Q Consensus 82 ~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~ 157 (473)
.+ .++++.. +..|| .+...+. ...+++||+.+.+....-.. ...-+.++.. ++ .||+.+..
T Consensus 84 --~~--~~~~~~s~dg~~l~-~~~~~~~---~~~i~v~d~~~~~~~~~~~~-----~~~~~~~~~spdg~~l~~~~~~-- 148 (331)
T 3u4y_A 84 --SS--MADVDITPDDQFAV-TVTGLNH---PFNMQSYSFLKNKFISTIPI-----PYDAVGIAISPNGNGLILIDRS-- 148 (331)
T ss_dssp --SC--CCCEEECTTSSEEE-ECCCSSS---SCEEEEEETTTTEEEEEEEC-----CTTEEEEEECTTSSCEEEEEET--
T ss_pred --CC--ccceEECCCCCEEE-EecCCCC---cccEEEEECCCCCeEEEEEC-----CCCccceEECCCCCEEEEEecC--
Confidence 12 2212222 44566 4332211 13799999998876544321 2222444443 33 47766543
Q ss_pred CCCcccc-EEEEeCCC
Q 011998 158 SQNLYDD-LYMIDVDS 172 (473)
Q Consensus 158 ~~~~~nd-v~~yd~~t 172 (473)
.+. +++|++..
T Consensus 149 ----~~~~i~~~~~~~ 160 (331)
T 3u4y_A 149 ----SANTVRRFKIDA 160 (331)
T ss_dssp ----TTTEEEEEEECT
T ss_pred ----CCceEEEEEECC
Confidence 134 66676654
No 60
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=88.22 E-value=17 Score=34.58 Aligned_cols=136 Identities=13% Similarity=0.073 Sum_probs=69.5
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC-CC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN-PP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~-~P 83 (473)
..|++||+.+++...... +. .....+..-++++++... +.+++||+.+.+++.+..... .+
T Consensus 71 ~~i~~~d~~~~~~~~~~~----~~-~v~~i~~~~dg~l~v~~~-------------~gl~~~d~~~g~~~~~~~~~~~~~ 132 (326)
T 2ghs_A 71 RELHELHLASGRKTVHAL----PF-MGSALAKISDSKQLIASD-------------DGLFLRDTATGVLTLHAELESDLP 132 (326)
T ss_dssp TEEEEEETTTTEEEEEEC----SS-CEEEEEEEETTEEEEEET-------------TEEEEEETTTCCEEEEECSSTTCT
T ss_pred CEEEEEECCCCcEEEEEC----CC-cceEEEEeCCCeEEEEEC-------------CCEEEEECCCCcEEEEeeCCCCCC
Confidence 357888888776654421 11 112222234678777542 248999999998877654311 11
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNL 161 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~ 161 (473)
..+.....+.-++++|+.............+|+|| +.+...+... . .. ....+.. ++ .||+....
T Consensus 133 ~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~--~--~~-~~~i~~s~dg~~lyv~~~~------ 199 (326)
T 2ghs_A 133 GNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFAD--I--SI-PNSICFSPDGTTGYFVDTK------ 199 (326)
T ss_dssp TEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEE--E--SS-EEEEEECTTSCEEEEEETT------
T ss_pred CCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCC--C--cc-cCCeEEcCCCCEEEEEECC------
Confidence 11222222222577776432111112346799999 4666554320 1 11 1122222 34 47776432
Q ss_pred cccEEEEeCC
Q 011998 162 YDDLYMIDVD 171 (473)
Q Consensus 162 ~ndv~~yd~~ 171 (473)
.+.+++||+.
T Consensus 200 ~~~I~~~d~~ 209 (326)
T 2ghs_A 200 VNRLMRVPLD 209 (326)
T ss_dssp TCEEEEEEBC
T ss_pred CCEEEEEEcc
Confidence 2468999975
No 61
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=87.31 E-value=22 Score=34.27 Aligned_cols=140 Identities=14% Similarity=0.204 Sum_probs=78.2
Q ss_pred CcEEEEECCCC--eEEecccCCCCC-----CcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGP-----EAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P-----~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
..+++||..+. .|+..... ... ......+.+..++.||+.... ..++.||..+. .|+.
T Consensus 63 g~v~a~d~~tG~~~W~~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~v~~~~------------g~l~a~d~~tG~~~W~~ 129 (376)
T 3q7m_A 63 GLVKALNADDGKEIWSVSLAE-KDGWFSKEPALLSGGVTVSGGHVYIGSEK------------AQVYALNTSDGTVAWQT 129 (376)
T ss_dssp SEEEEEETTTCCEEEEEECCC----CCSCCCCCEEEEEEEETTEEEEEETT------------SEEEEEETTTCCEEEEE
T ss_pred CeEEEEEccCCceeeeecCcc-ccccccccCcccccCceEeCCEEEEEcCC------------CEEEEEECCCCCEEEEE
Confidence 36899999865 57754211 100 222334455678888886541 46999999876 4765
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEe
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
-... ....+.+..++.+|+..+ -..++.||..+.+ |+.-.... ....+...+.+..++.+|+ |
T Consensus 130 ~~~~------~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~~~~-~~~~~~~~~~~~~~~~v~~-g 194 (376)
T 3q7m_A 130 KVAG------EALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNLDMP-SLSLRGESAPTTAFGAAVV-G 194 (376)
T ss_dssp ECSS------CCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEECCC------CCCCCCEEETTEEEE-C
T ss_pred eCCC------ceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeCCCC-ceeecCCCCcEEECCEEEE-E
Confidence 3221 112223455788877432 2468999998776 76654211 1111222334455777666 3
Q ss_pred cccCCCCccccEEEEeCCCC--cEEEE
Q 011998 154 GFTDSQNLYDDLYMIDVDSG--LWTKV 178 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~--~W~~v 178 (473)
.. ...++.||+.++ .|+.-
T Consensus 195 ~~------~g~l~~~d~~tG~~~w~~~ 215 (376)
T 3q7m_A 195 GD------NGRVSAVLMEQGQMIWQQR 215 (376)
T ss_dssp CT------TTEEEEEETTTCCEEEEEE
T ss_pred cC------CCEEEEEECCCCcEEEEEe
Confidence 22 135899998876 46654
No 62
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=87.03 E-value=20 Score=37.43 Aligned_cols=148 Identities=15% Similarity=0.046 Sum_probs=78.5
Q ss_pred CeEEEEECC-CC---eEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCC-CC
Q 011998 61 NDLYILNTE-TF---VWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM-VL 134 (473)
Q Consensus 61 ~dv~~yd~~-t~---~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~-~p 134 (473)
.++|++|+. +. ....+... . .......+.. ++++|+.+..++ ...+|++|+.+.+|+.+..... .-
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~~---~-~~~~~~~~~spdg~l~~~~~~~~----~~~l~~~~~~~~~~~~l~~~~~~~~ 288 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLGG---P-EEAIAQAEWAPDGSLIVATDRTG----WWNLHRVDPATGAATQLCRREEEFA 288 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEEE---T-TBCEEEEEECTTSCEEEEECTTS----SCEEEEECTTTCCEEESSCCSSBSS
T ss_pred cEEEEEEECCCCcccccEEeCCC---C-CceEcceEECCCCeEEEEECCCC----CeEEEEEECCCCceeeccccccccc
Confidence 579999998 56 44444321 0 1111222222 667777766543 2479999998999988754111 00
Q ss_pred CCcc---eeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEE-EeccccCCEEEEEcc
Q 011998 135 SPRA---GHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD-CLDPLKGGVLVFIGG 209 (473)
Q Consensus 135 ~~R~---~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~-~~~~~~~~~l~v~GG 209 (473)
.+.. ....+.. ++++++.+.. -...+|.+|+.+...+.+... ... ...+ .. .++.+++..+
T Consensus 289 ~p~w~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~d~~~~~~~~l~~~----~~~--~~~~~s~---~~~~~~~~~~ 354 (662)
T 3azo_A 289 GPLWTPGMRWFAPLANGLIAVVHGK-----GAAVLGILDPESGELVDAAGP----WTE--WAATLTV---SGTRAVGVAA 354 (662)
T ss_dssp CCCCSTTCCSEEECTTSCEEEEEBS-----SSCEEEEEETTTTEEEECCSS----CCE--EEEEEEE---ETTEEEEEEE
T ss_pred CccccccCceEeEeCCCEEEEEEEc-----CccEEEEEECCCCcEEEecCC----CCe--EEEEEec---CCCEEEEEEc
Confidence 0111 1123333 5666665543 234688889988877666431 111 1122 22 2555555543
Q ss_pred cCCCCCccCcEEEEEccccceeee
Q 011998 210 CNKSLEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 210 ~~~~~~~~~dv~~ld~~~~~w~~~ 233 (473)
.. .....+|.++....+...+
T Consensus 355 ~~---~~~~~i~~~d~~~g~~~~l 375 (662)
T 3azo_A 355 SP---RTAYEVVELDTVTGRARTI 375 (662)
T ss_dssp ET---TEEEEEEEEETTTCCEEEE
T ss_pred CC---CCCCEEEEEECCCCceEEe
Confidence 22 2345688888766554443
No 63
>2z3z_A Dipeptidyl aminopeptidase IV; peptidase family S9, prolyl oligopeptidase family, serine PR proline-specific peptidase, hydrolase; HET: AIO; 1.95A {Porphyromonas gingivalis} PDB: 2z3w_A* 2d5l_A 2eep_A* 2dcm_A*
Probab=86.86 E-value=20 Score=37.84 Aligned_cols=65 Identities=12% Similarity=0.065 Sum_probs=36.7
Q ss_pred cceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC-cEEEEe
Q 011998 111 LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKVI 179 (473)
Q Consensus 111 ~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~-~W~~v~ 179 (473)
...++++|+.+.+-..+.. ..........+.+ +++.++++... .......++.+|+.+. .+..+.
T Consensus 234 ~~~l~~~d~~~~~~~~~~~---~~~~~~~~~~~~~spdg~~l~~~~~~-~~~~~~~v~~~d~~~g~~~~~~~ 301 (706)
T 2z3z_A 234 HVTVGIYHLATGKTVYLQT---GEPKEKFLTNLSWSPDENILYVAEVN-RAQNECKVNAYDAETGRFVRTLF 301 (706)
T ss_dssp EEEEEEEETTTTEEEECCC---CSCTTCEEEEEEECTTSSEEEEEEEC-TTSCEEEEEEEETTTCCEEEEEE
T ss_pred eeEEEEEECCCCceEeecc---CCCCceeEeeEEEECCCCEEEEEEeC-CCCCeeEEEEEECCCCceeeEEE
Confidence 3679999999887655542 1111122222222 45544444432 2223457999999988 776664
No 64
>3q7m_A Lipoprotein YFGL, BAMB; beta-propeller, BAM complex, outer membrane protein folding, negative, BAMA, protein binding; 1.65A {Escherichia coli} PDB: 3q7n_A 3q7o_A 3p1l_A 3prw_A 2yh3_A 3q54_A
Probab=86.77 E-value=23 Score=34.05 Aligned_cols=114 Identities=16% Similarity=0.193 Sum_probs=68.2
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCC----CCCceeeEEEEECCEEEEEeCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP----PSARDSHTCSSWKNKIIVIGGEDGH 107 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~----P~~R~~hs~~~~~~~IyV~GG~~~~ 107 (473)
+.++.++.||+.... ..+++||..+. .|+.-...... .......+.+..++.||+...
T Consensus 48 ~p~v~~~~v~~~~~~------------g~v~a~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~---- 111 (376)
T 3q7m_A 48 HPALADNVVYAADRA------------GLVKALNADDGKEIWSVSLAEKDGWFSKEPALLSGGVTVSGGHVYIGSE---- 111 (376)
T ss_dssp CCEEETTEEEEECTT------------SEEEEEETTTCCEEEEEECCC---CCSCCCCCEEEEEEEETTEEEEEET----
T ss_pred ccEEECCEEEEEcCC------------CeEEEEEccCCceeeeecCccccccccccCcccccCceEeCCEEEEEcC----
Confidence 456678999987652 36899998765 57654321100 022333445566889988543
Q ss_pred CCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc--EEEEe
Q 011998 108 DYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVI 179 (473)
Q Consensus 108 ~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v~ 179 (473)
-..++.||..+.+ |+.-... ....+.+..++.+|+..+ ...++.||.++++ |+.-.
T Consensus 112 ---~g~l~a~d~~tG~~~W~~~~~~------~~~~~p~~~~~~v~v~~~-------~g~l~~~d~~tG~~~W~~~~ 171 (376)
T 3q7m_A 112 ---KAQVYALNTSDGTVAWQTKVAG------EALSRPVVSDGLVLIHTS-------NGQLQALNEADGAVKWTVNL 171 (376)
T ss_dssp ---TSEEEEEETTTCCEEEEEECSS------CCCSCCEEETTEEEEECT-------TSEEEEEETTTCCEEEEEEC
T ss_pred ---CCEEEEEECCCCCEEEEEeCCC------ceEcCCEEECCEEEEEcC-------CCeEEEEECCCCcEEEEEeC
Confidence 2578999998765 7553321 112223455777777432 1359999998775 77543
No 65
>3pe7_A Oligogalacturonate lyase; seven-bladed beta-propeller; 1.65A {Yersinia enterocolitica subsp}
Probab=86.05 E-value=24 Score=33.68 Aligned_cols=157 Identities=16% Similarity=0.168 Sum_probs=76.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..++++|+.+.+-..+... ..+..+....- +++.+++..... .......+|.+|..+.....+... .
T Consensus 168 ~~l~~~d~~~g~~~~l~~~----~~~~~~~~~sp~dg~~l~~~~~~~-----~~~~~~~l~~~d~~~~~~~~l~~~---~ 235 (388)
T 3pe7_A 168 CRLMRVDLKTGESTVILQE----NQWLGHPIYRPYDDSTVAFCHEGP-----HDLVDARMWLINEDGTNMRKVKTH---A 235 (388)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEECSC-----TTTSSCSEEEEETTSCCCEESCCC---C
T ss_pred ceEEEEECCCCceEEeecC----CccccccEECCCCCCEEEEEEecC-----CCCCcceEEEEeCCCCceEEeeeC---C
Confidence 5789999998876665321 12223333333 455444433211 111245899999988766665432 1
Q ss_pred CCceeeEEEEE--CCE-EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCC------cceeEEEEECCEEEEEe-
Q 011998 84 SARDSHTCSSW--KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP------RAGHSTVAFGKNLFVFG- 153 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~-IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~------R~~hs~~~~~~~LyV~G- 153 (473)
.. .......+ +++ |+......+. ....++++|+.+.+-+.+.. .+.. ..+....--+..|++..
T Consensus 236 ~~-~~~~~~~~spdg~~l~~~~~~~~~--~~~~l~~~d~~~g~~~~l~~---~~~~~~~~~~~~~~~~spdg~~l~~~~~ 309 (388)
T 3pe7_A 236 EG-ESCTHEFWVPDGSALVYVSYLKGS--PDRFIYSADPETLENRQLTS---MPACSHLMSNYDGSLMVGDGSDAPVDVQ 309 (388)
T ss_dssp TT-EEEEEEEECTTSSCEEEEEEETTC--CCEEEEEECTTTCCEEEEEE---ECCEEEEEECTTSSEEEEEECCC-----
T ss_pred CC-cccccceECCCCCEEEEEecCCCC--CcceEEEEecCCCceEEEEc---CCCceeeeecCCCCeEccCCCcceeEee
Confidence 11 11112223 444 5443332221 12359999999998776643 2210 00011111122233221
Q ss_pred ---cccCCCCccccEEEEeCCCCcEEEEeeC
Q 011998 154 ---GFTDSQNLYDDLYMIDVDSGLWTKVITT 181 (473)
Q Consensus 154 ---G~~~~~~~~ndv~~yd~~t~~W~~v~~~ 181 (473)
|+. ..-...++++|+.++.-+.+...
T Consensus 310 ~~~~~~--~~~~~~i~~~d~~~~~~~~l~~~ 338 (388)
T 3pe7_A 310 DDSGYK--IENDPFLYVFNMKNGTQHRVARH 338 (388)
T ss_dssp ---------CCCCEEEEEETTTTEEEEEEEC
T ss_pred eccccc--cCCCCEEEEEeccCCceEEeccc
Confidence 110 11235699999999887777653
No 66
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=85.69 E-value=9.3 Score=35.48 Aligned_cols=91 Identities=15% Similarity=0.104 Sum_probs=45.9
Q ss_pred eEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcce
Q 011998 113 DVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 190 (473)
Q Consensus 113 dv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~ 190 (473)
.+++||+.+.+-..+.. .+....-+.++.. ++ .+|+. .+.+++||+.+.+-......+..|
T Consensus 220 ~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~l~~~---------~~~v~~~d~~~~~~~~~~~~~~~~----- 282 (337)
T 1pby_B 220 GLLTMDLETGEMAMREV---RIMDVFYFSTAVNPAKTRAFGA---------YNVLESFDLEKNASIKRVPLPHSY----- 282 (337)
T ss_dssp EEEEEETTTCCEEEEEE---EECSSCEEEEEECTTSSEEEEE---------ESEEEEEETTTTEEEEEEECSSCC-----
T ss_pred ceEEEeCCCCCceEeec---CCCCCceeeEEECCCCCEEEEe---------CCeEEEEECCCCcCcceecCCCce-----
Confidence 68999999887653332 1112222223333 23 45554 146999999887544333222111
Q ss_pred eeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 191 VAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 191 ~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
. ++.+.+ .+..||+ ++.+ +.+.++|..+.+
T Consensus 283 ~-~~~~s~-dg~~l~~-~~~~------~~i~v~d~~~~~ 312 (337)
T 1pby_B 283 Y-SVNVST-DGSTVWL-GGAL------GDLAAYDAETLE 312 (337)
T ss_dssp C-EEEECT-TSCEEEE-ESBS------SEEEEEETTTCC
T ss_pred e-eEEECC-CCCEEEE-EcCC------CcEEEEECcCCc
Confidence 1 222321 1344555 4332 458888876543
No 67
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=85.56 E-value=12 Score=40.39 Aligned_cols=94 Identities=11% Similarity=0.172 Sum_probs=53.8
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE--C--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV--G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
.+.+||..+.++...... ......-..+.. + +.+++.|+.+ ..+.+||+.+..|..+....
T Consensus 32 ~I~vwd~~~~~~~~~~~l---~~h~~~V~~l~~s~~~~~~~l~s~s~D-----------g~I~vwd~~~~~~~~~~~~~- 96 (753)
T 3jro_A 32 TIKIFEVEGETHKLIDTL---TGHEGPVWRVDWAHPKFGTILASCSYD-----------GKVLIWKEENGRWSQIAVHA- 96 (753)
T ss_dssp EEEEEEEETTEEEEEEEE---CCCSSCEEEEEECCTTSCSEEEEEETT-----------SCEEEEEEETTEEEEEEEEC-
T ss_pred cEEEEecCCCCCccceec---cCCcCceEEEEecCCCCCCEEEEEeCC-----------CeEEEEECCCCccccccccc-
Confidence 477888777777655322 111111222222 3 6677777742 35888999999887665431
Q ss_pred CCCCceeeEEEEE--C--CEEEEEeCCCCCCCccceEEEEECCCC
Q 011998 82 PPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDVHILDTDTL 122 (473)
Q Consensus 82 ~P~~R~~hs~~~~--~--~~IyV~GG~~~~~~~~ndv~~yD~~t~ 122 (473)
.....-.++.+ + +.+++.|+.++ .+.+||..+.
T Consensus 97 --~h~~~V~~v~~sp~~~~~~l~sgs~dg------~I~vwdl~~~ 133 (753)
T 3jro_A 97 --VHSASVNSVQWAPHEYGPLLLVASSDG------KVSVVEFKEN 133 (753)
T ss_dssp --CCSSCEEEEEECCGGGCSEEEEEETTS------EEEEEECCSS
T ss_pred --CCCCCeEEEEECCCCCCCEEEEEeCCC------cEEEEEeecC
Confidence 11222333333 3 67888887543 5778887765
No 68
>3ju4_A Endo-N-acetylneuraminidase; endonf, polysia, high-resolution, glycosidase, hydrolase; HET: SLB; 0.98A {Enterobacteria phage K1F} PDB: 3gvl_A* 3gvj_A* 3gvk_A* 1v0e_A 1v0f_A*
Probab=85.51 E-value=30 Score=34.98 Aligned_cols=184 Identities=17% Similarity=0.244 Sum_probs=100.6
Q ss_pred CCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEE--E-----ECCCCeEEEeecCCCCCCCc
Q 011998 14 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYI--L-----NTETFVWKRATTSGNPPSAR 86 (473)
Q Consensus 14 t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~--y-----d~~t~~W~~l~~~g~~P~~R 86 (473)
.+.|+..+. +..|..-.-|+.+.+++.-|.+|=-.. ...-.++=. | .+....=+.++.- .....
T Consensus 269 ~spW~~t~L-~~i~~vTe~HSFa~i~~~~fa~GyHnG------Dv~PRe~G~~yfs~~~~sp~~~vrr~i~se--y~~~A 339 (670)
T 3ju4_A 269 KSPWRKTDL-GLIPSVTEVHSFATIDNNGFAMGYHQG------DVAPREVGLFYFPDAFNSPSNYVRRQIPSE--YEPDA 339 (670)
T ss_dssp TSCCEEEEC-CSCTTCSEEEEEEECSSSCEEEEEEEC------SSSSCEEEEEEETTTTTCTTCCEEEECCGG--GCTTE
T ss_pred cCCceeccc-ccccceeeeeeeeEecCCceEEEeccC------CCCcceeeEEEecccccCCcceeeeechhh--hcccc
Confidence 456776543 466766778999999987777764321 111222222 2 1122222233221 11122
Q ss_pred eeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCC------
Q 011998 87 DSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN------ 160 (473)
Q Consensus 87 ~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~------ 160 (473)
...+.-.+++.||+.--.......-+.+.+-+.....|..+... -.......-.+..++.||+||-....++
T Consensus 340 sEPCvkyYdgvLyLtTRgt~~~~~GS~L~rs~d~Gq~w~slrfp--~nvHhtnlPFakvgD~l~mFgsERA~nEWE~G~p 417 (670)
T 3ju4_A 340 SEPCIKYYDGVLYLITRGTRGDRLGSSLHRSRDIGQTWESLRFP--HNVHHTTLPFAKVGDDLIMFGSERAENEWEAGAP 417 (670)
T ss_dssp EEEEEEEETTEEEEEEEESCTTSCCCEEEEESSTTSSCEEEECT--TCCCSSCCCEEEETTEEEEEEECSSTTCSSTTCC
T ss_pred ccchhhhhCCEEEEEecCcCCCCCcceeeeecccCCchhheecc--ccccccCCCcceeCCEEEEEeccccccccccCCC
Confidence 33444567999998864433333567788888888999999851 1112222235678999999986432111
Q ss_pred ------cccc--EEEEeC-----CCCcEEEEeeC---CCCCCCcceeeEEEeccccCCE-EEEEcccC
Q 011998 161 ------LYDD--LYMIDV-----DSGLWTKVITT---GEGPSARFSVAGDCLDPLKGGV-LVFIGGCN 211 (473)
Q Consensus 161 ------~~nd--v~~yd~-----~t~~W~~v~~~---g~~P~~R~~~~a~~~~~~~~~~-l~v~GG~~ 211 (473)
.... +.+.++ +.-.|..+... |.....-.+..++|+ .++. .|||||.+
T Consensus 418 D~RY~a~yPRtF~~r~nv~~W~~d~~ew~nItdqIYqG~ivNsavGVGSv~v---KD~~lyyiFGgEd 482 (670)
T 3ju4_A 418 DDRYKASYPRTFYARLNVNNWNADDIEWVNITDQIYQGGIVNSGVGVGSVVV---KDNYIYYMFGGED 482 (670)
T ss_dssp CCCSSCBCCEEEEEEEETTTCCCTTCCCEEEEECBBCCSSSCCCSEEEEEEE---ETTEEEEEEEEBC
T ss_pred cccccccCCceEEEEeecccCCccceEEEEeecceeccccccccccceeEEE---eCCEEEEEecCcc
Confidence 1111 223333 34478877754 333334455556666 4665 56889864
No 69
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=85.40 E-value=27 Score=33.63 Aligned_cols=104 Identities=11% Similarity=0.134 Sum_probs=56.2
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+..-..... .....-.+..+ ++.+++.|+.+ ..+.+
T Consensus 108 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~-----~h~~~v~~~~~~~~~~~l~s~s~d------~~i~i 165 (420)
T 3vl1_A 108 QMRRFILGTTE-----------GDIKVLDSNFNLQREIDQ-----AHVSEITKLKFFPSGEALISSSQD------MQLKI 165 (420)
T ss_dssp SSCEEEEEETT-----------SCEEEECTTSCEEEEETT-----SSSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred CCCEEEEEECC-----------CCEEEEeCCCcceeeecc-----cccCccEEEEECCCCCEEEEEeCC------CeEEE
Confidence 56778888742 358889988775443311 11112222233 56677777754 35888
Q ss_pred EECCCCCEE-EeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 117 LDTDTLTWK-ELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 117 yD~~t~~W~-~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
||+.+.+-. .+.. ....-.+++.. ++++++.|+.+ ..+.+||+.+.+-
T Consensus 166 wd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~s~~~d------~~v~iwd~~~~~~ 215 (420)
T 3vl1_A 166 WSVKDGSNPRTLIG-----HRATVTDIAIIDRGRNVLSASLD------GTIRLWECGTGTT 215 (420)
T ss_dssp EETTTCCCCEEEEC-----CSSCEEEEEEETTTTEEEEEETT------SCEEEEETTTTEE
T ss_pred EeCCCCcCceEEcC-----CCCcEEEEEEcCCCCEEEEEcCC------CcEEEeECCCCce
Confidence 998765421 1111 11111223333 45566677652 2488899887643
No 70
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=85.05 E-value=27 Score=33.30 Aligned_cols=135 Identities=6% Similarity=0.010 Sum_probs=65.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+++||+.+.+-...... .. ..-.+++.. ++.+++.|+.++ .+.+||..+.+....-. .....-
T Consensus 227 g~i~~~d~~~~~~~~~~~~---~~-~~i~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~~----~~~~~i 292 (425)
T 1r5m_A 227 GAIFVYQITEKTPTGKLIG---HH-GPISVLEFNDTNKLLLSASDDG------TLRIWHGGNGNSQNCFY----GHSQSI 292 (425)
T ss_dssp GCEEEEETTCSSCSEEECC---CS-SCEEEEEEETTTTEEEEEETTS------CEEEECSSSBSCSEEEC----CCSSCE
T ss_pred CeEEEEEcCCCceeeeecc---CC-CceEEEEECCCCCEEEEEcCCC------EEEEEECCCCccceEec----CCCccE
Confidence 4688999887643221111 11 111222222 566777776443 47788877654322211 111222
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCc
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDD 219 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~d 219 (473)
.+++...+.+++.|+.. ..+.+||+.+.+-...... . .....++.+. .++.+++.|+.+. .
T Consensus 293 ~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~---~--~~~i~~~~~s--~~~~~l~~~~~dg------~ 353 (425)
T 1r5m_A 293 VSASWVGDDKVISCSMD------GSVRLWSLKQNTLLALSIV---D--GVPIFAGRIS--QDGQKYAVAFMDG------Q 353 (425)
T ss_dssp EEEEEETTTEEEEEETT------SEEEEEETTTTEEEEEEEC---T--TCCEEEEEEC--TTSSEEEEEETTS------C
T ss_pred EEEEECCCCEEEEEeCC------CcEEEEECCCCcEeEeccc---C--CccEEEEEEc--CCCCEEEEEECCC------e
Confidence 33334433266666642 3589999987653333221 1 1112222232 3566777776553 3
Q ss_pred EEEEEcccc
Q 011998 220 MYYLYTGLV 228 (473)
Q Consensus 220 v~~ld~~~~ 228 (473)
+.+|+....
T Consensus 354 i~i~~~~~~ 362 (425)
T 1r5m_A 354 VNVYDLKKL 362 (425)
T ss_dssp EEEEECHHH
T ss_pred EEEEECCCC
Confidence 667776543
No 71
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=84.58 E-value=32 Score=33.76 Aligned_cols=172 Identities=13% Similarity=0.116 Sum_probs=86.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
.+.+||..+.+-...-. + . ...-.+...++.+++.|+.+ ..+.+||..+.+....-.. .
T Consensus 154 ~i~iwd~~~~~~~~~~~-~--h--~~~v~~l~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~~-----h 212 (435)
T 1p22_A 154 TIKIWDKNTLECKRILT-G--H--TGSVLCLQYDERVIITGSSD-----------STVRVWDVNTGEMLNTLIH-----H 212 (435)
T ss_dssp CEEEEESSSCCEEEEEC-C--C--SSCEEEEECCSSEEEEEETT-----------SCEEEEESSSCCEEEEECC-----C
T ss_pred eEEEEeCCCCeEEEEEc-C--C--CCcEEEEEECCCEEEEEcCC-----------CeEEEEECCCCcEEEEEcC-----C
Confidence 46677776654433211 1 1 11222333477777888742 3588899988764332211 1
Q ss_pred ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEe-eCCCCCCCCcceeEEEEECCEEEEEecccCCCCcccc
Q 011998 86 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL-NTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 86 R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l-~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~nd 164 (473)
...-.+..+.+..++.|+.++ .+.+||..+..-... .. .......-.++.+++..++.|+.+ ..
T Consensus 213 ~~~v~~l~~~~~~l~s~s~dg------~i~vwd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~l~s~~~d------g~ 277 (435)
T 1p22_A 213 CEAVLHLRFNNGMMVTCSKDR------SIAVWDMASPTDITLRRV---LVGHRAAVNVVDFDDKYIVSASGD------RT 277 (435)
T ss_dssp CSCEEEEECCTTEEEEEETTS------CEEEEECSSSSCCEEEEE---ECCCSSCEEEEEEETTEEEEEETT------SE
T ss_pred CCcEEEEEEcCCEEEEeeCCC------cEEEEeCCCCCCceeeeE---ecCCCCcEEEEEeCCCEEEEEeCC------Ce
Confidence 122333444556777777543 477888876542211 11 111122223333455566666652 34
Q ss_pred EEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 165 LYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 165 v~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+.+||+.+..-...-.. .. ....+... ++.+++.|+.++ .+.++|..+.
T Consensus 278 i~vwd~~~~~~~~~~~~--~~---~~v~~~~~----~~~~l~~g~~dg------~i~iwd~~~~ 326 (435)
T 1p22_A 278 IKVWNTSTCEFVRTLNG--HK---RGIACLQY----RDRLVVSGSSDN------TIRLWDIECG 326 (435)
T ss_dssp EEEEETTTCCEEEEEEC--CS---SCEEEEEE----ETTEEEEEETTS------CEEEEETTTC
T ss_pred EEEEECCcCcEEEEEcC--CC---CcEEEEEe----CCCEEEEEeCCC------eEEEEECCCC
Confidence 88999888754332221 11 11122222 345667776554 3667776653
No 72
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=84.55 E-value=11 Score=35.34 Aligned_cols=156 Identities=13% Similarity=0.073 Sum_probs=82.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+++||+.+.. ...+++||+.+.++..+... + ...-++++.. ++++|+....+.. ....+++|
T Consensus 55 ~g~l~~~~~~-----------~~~i~~~d~~~~~~~~~~~~---~-~~~~~~i~~~~dg~l~v~~~~~~~--~~~~i~~~ 117 (333)
T 2dg1_A 55 QGQLFLLDVF-----------EGNIFKINPETKEIKRPFVS---H-KANPAAIKIHKDGRLFVCYLGDFK--STGGIFAA 117 (333)
T ss_dssp TSCEEEEETT-----------TCEEEEECTTTCCEEEEEEC---S-SSSEEEEEECTTSCEEEEECTTSS--SCCEEEEE
T ss_pred CCCEEEEECC-----------CCEEEEEeCCCCcEEEEeeC---C-CCCcceEEECCCCcEEEEeCCCCC--CCceEEEE
Confidence 4678887663 14689999999888766421 1 1122334333 6788887643311 12579999
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|+.+.....+-.. ......-...+.. ++++|+.............++++|+.+.+...+.... . . ..+..+
T Consensus 118 d~~~~~~~~~~~~--~~~~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~--~--~--~~~i~~ 189 (333)
T 2dg1_A 118 TENGDNLQDIIED--LSTAYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQNI--S--V--ANGIAL 189 (333)
T ss_dssp CTTSCSCEEEECS--SSSCCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEEE--S--S--EEEEEE
T ss_pred eCCCCEEEEEEcc--CccCCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecCC--C--c--ccceEE
Confidence 9998876643221 1111112222222 4667775432111122456999998887776654310 0 1 122333
Q ss_pred ccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 197 DPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
.. .++.||+.... .+.+++|+..
T Consensus 190 ~~-dg~~l~v~~~~------~~~i~~~d~~ 212 (333)
T 2dg1_A 190 ST-DEKVLWVTETT------ANRLHRIALE 212 (333)
T ss_dssp CT-TSSEEEEEEGG------GTEEEEEEEC
T ss_pred CC-CCCEEEEEeCC------CCeEEEEEec
Confidence 21 13457776422 2357788764
No 73
>3azo_A Aminopeptidase; POP family, hydrolase; 2.00A {Streptomyces morookaensis} PDB: 3azp_A 3azq_A
Probab=84.39 E-value=13 Score=38.89 Aligned_cols=150 Identities=13% Similarity=0.039 Sum_probs=83.6
Q ss_pred CcEEEEECC-CC---eEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC
Q 011998 5 RDLHILDTS-SH---TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS 79 (473)
Q Consensus 5 ~dv~~yD~~-t~---~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~ 79 (473)
.+++++|.. +. ....+.. ... ..-...... ++++|+.+..+ + ...+|++|+.+.+|+.+...
T Consensus 217 ~~i~~~d~~~~g~~~~~~~l~~---~~~-~~~~~~~~spdg~l~~~~~~~------~---~~~l~~~~~~~~~~~~l~~~ 283 (662)
T 3azo_A 217 TELKTARVTEDGRFADTRTLLG---GPE-EAIAQAEWAPDGSLIVATDRT------G---WWNLHRVDPATGAATQLCRR 283 (662)
T ss_dssp EEEEEEEECTTSCEEEEEEEEE---ETT-BCEEEEEECTTSCEEEEECTT------S---SCEEEEECTTTCCEEESSCC
T ss_pred cEEEEEEECCCCcccccEEeCC---CCC-ceEcceEECCCCeEEEEECCC------C---CeEEEEEECCCCceeecccc
Confidence 468999988 56 4444421 011 111222222 56777666532 1 23799999988999877542
Q ss_pred CC-CCCCce---eeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEE-EEECCEEEEEe
Q 011998 80 GN-PPSARD---SHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST-VAFGKNLFVFG 153 (473)
Q Consensus 80 g~-~P~~R~---~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~-~~~~~~LyV~G 153 (473)
.. .-.+.+ ..+.+.. ++++++.+.. + ...+|.+|+.+.+.+.+.. +.. ..... ...++.+++..
T Consensus 284 ~~~~~~p~w~~~~~~~~~~~~~~~~~~~~~-~----~~~l~~~d~~~~~~~~l~~----~~~-~~~~~~s~~~~~~~~~~ 353 (662)
T 3azo_A 284 EEEFAGPLWTPGMRWFAPLANGLIAVVHGK-G----AAVLGILDPESGELVDAAG----PWT-EWAATLTVSGTRAVGVA 353 (662)
T ss_dssp SSBSSCCCCSTTCCSEEECTTSCEEEEEBS-S----SCEEEEEETTTTEEEECCS----SCC-EEEEEEEEETTEEEEEE
T ss_pred cccccCccccccCceEeEeCCCEEEEEEEc-C----ccEEEEEECCCCcEEEecC----CCC-eEEEEEecCCCEEEEEE
Confidence 11 000111 1122333 6777777654 2 3678999998888776653 111 11222 34456665554
Q ss_pred cccCCCCccccEEEEeCCCCcEEEEee
Q 011998 154 GFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
+.. .....+|.+|+.+.+.+.+..
T Consensus 354 ~~~---~~~~~i~~~d~~~g~~~~l~~ 377 (662)
T 3azo_A 354 ASP---RTAYEVVELDTVTGRARTIGA 377 (662)
T ss_dssp EET---TEEEEEEEEETTTCCEEEEES
T ss_pred cCC---CCCCEEEEEECCCCceEEeec
Confidence 431 234569999999988887753
No 74
>3fm0_A Protein CIAO1; WDR39,SGC,WD40,CIAO1, nucleus, WD repeat, biosynthetic prote structural genomics, structural genomics consortium; 1.70A {Homo sapiens}
Probab=84.20 E-value=19 Score=34.43 Aligned_cols=152 Identities=13% Similarity=0.120 Sum_probs=76.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.||.+ ..+.+||..+..|....... ......-.++.+ ++.+++.|+.++. +.+
T Consensus 27 ~g~~las~~~D-----------~~i~iw~~~~~~~~~~~~~~--~~h~~~v~~~~~sp~g~~l~s~s~D~~------v~i 87 (345)
T 3fm0_A 27 AGTLLASCGGD-----------RRIRIWGTEGDSWICKSVLS--EGHQRTVRKVAWSPCGNYLASASFDAT------TCI 87 (345)
T ss_dssp TSSCEEEEETT-----------SCEEEEEEETTEEEEEEEEC--SSCSSCEEEEEECTTSSEEEEEETTSC------EEE
T ss_pred CCCEEEEEcCC-----------CeEEEEEcCCCcceeeeeec--cccCCcEEEEEECCCCCEEEEEECCCc------EEE
Confidence 56777788742 35788888888875432210 011112223333 5777888876543 566
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC-cEEEEeeCCCCCCCcceeeE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKVITTGEGPSARFSVAG 193 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~-~W~~v~~~g~~P~~R~~~~a 193 (473)
||..+..+..+.. +......-.++.+ ++++++.|+.+ ..+.+||+.+. .+..+....... ....+
T Consensus 88 w~~~~~~~~~~~~---~~~h~~~v~~v~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~~~~~h~---~~v~~ 155 (345)
T 3fm0_A 88 WKKNQDDFECVTT---LEGHENEVKSVAWAPSGNLLATCSRD------KSVWVWEVDEEDEYECVSVLNSHT---QDVKH 155 (345)
T ss_dssp EEECCC-EEEEEE---ECCCSSCEEEEEECTTSSEEEEEETT------SCEEEEEECTTSCEEEEEEECCCC---SCEEE
T ss_pred EEccCCCeEEEEE---ccCCCCCceEEEEeCCCCEEEEEECC------CeEEEEECCCCCCeEEEEEecCcC---CCeEE
Confidence 7777776655443 2111111222233 45677777753 24788887664 344333221111 11122
Q ss_pred EEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 194 DCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 194 ~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
+.+. .++.+++.|+.+.. +.+++.....
T Consensus 156 ~~~~--p~~~~l~s~s~d~~------i~~w~~~~~~ 183 (345)
T 3fm0_A 156 VVWH--PSQELLASASYDDT------VKLYREEEDD 183 (345)
T ss_dssp EEEC--SSSSCEEEEETTSC------EEEEEEETTE
T ss_pred EEEC--CCCCEEEEEeCCCc------EEEEEecCCC
Confidence 2222 35667777776653 4555554433
No 75
>1kb0_A Quinohemoprotein alcohol dehydrogenase; beta-propeller fold, cytochrome C, oxidoreductase; HET: TRO HEC PQQ; 1.44A {Comamonas testosteroni} SCOP: a.3.1.6 b.70.1.1
Probab=84.16 E-value=48 Score=35.45 Aligned_cols=127 Identities=15% Similarity=0.189 Sum_probs=71.4
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCC--C---CCceeeEEEEECCEEEEEeCCC
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP--P---SARDSHTCSSWKNKIIVIGGED 105 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~--P---~~R~~hs~~~~~~~IyV~GG~~ 105 (473)
.+.++.++.||+.... +.++.+|..|. .|+.-...... + ......+.++.+++||+...
T Consensus 71 ~~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~a~~~~~v~v~~~-- 136 (677)
T 1kb0_A 71 ATPVVVDGIMYVSASW------------SVVHAIDTRTGNRIWTYDPQIDRSTGFKGCCDVVNRGVALWKGKVYVGAW-- 136 (677)
T ss_dssp CCCEEETTEEEEECGG------------GCEEEEETTTTEEEEEECCCCCGGGGGGSSSCSCCCCCEEETTEEEEECT--
T ss_pred eCCEEECCEEEEECCC------------CeEEEEECCCCcEEEEEcCCCCccccccccccCCCCCceEECCEEEEEcC--
Confidence 3445678999998662 46899999876 58754322100 0 00112344556888888532
Q ss_pred CCCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc--EEEEe
Q 011998 106 GHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVI 179 (473)
Q Consensus 106 ~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v~ 179 (473)
-..++.+|..+.+ |+.-.............+.++.++.+|+-.+. ........++.||..+++ |+.-.
T Consensus 137 -----dg~l~alD~~tG~~~W~~~~~~~~~~~~~~~~~p~v~~~~v~v~~~~-~~~~~~g~v~a~D~~tG~~~W~~~~ 208 (677)
T 1kb0_A 137 -----DGRLIALDAATGKEVWHQNTFEGQKGSLTITGAPRVFKGKVIIGNGG-AEYGVRGYITAYDAETGERKWRWFS 208 (677)
T ss_dssp -----TSEEEEEETTTCCEEEEEETTTTCCSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEES
T ss_pred -----CCEEEEEECCCCCEEeeecCCcCcCcCcccccCcEEECCEEEEEecc-cccCCCCEEEEEECCCCcEEEEecc
Confidence 2568999998775 76542100000011122334567777764432 111234669999998874 77643
No 76
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=84.04 E-value=17 Score=33.96 Aligned_cols=148 Identities=20% Similarity=0.263 Sum_probs=70.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.|+++|+.+.+....-. .+....-+.++.. + +.+|+.+.. ...+++||+.+.+.......+..
T Consensus 21 ~~v~~~d~~~~~~~~~~~---~~~~~~~~~~~~s~dg~~~~v~~~~-----------~~~i~~~d~~t~~~~~~~~~~~~ 86 (349)
T 1jmx_B 21 NNLHVVDVASDTVYKSCV---MPDKFGPGTAMMAPDNRTAYVLNNH-----------YGDIYGIDLDTCKNTFHANLSSV 86 (349)
T ss_dssp TEEEEEETTTTEEEEEEE---CSSCCSSCEEEECTTSSEEEEEETT-----------TTEEEEEETTTTEEEEEEESCCS
T ss_pred CeEEEEECCCCcEEEEEe---cCCCCCCceeEECCCCCEEEEEeCC-----------CCcEEEEeCCCCcEEEEEEcccc
Confidence 568999999887654321 1110012233333 3 357777652 24699999998875533222111
Q ss_pred CCC--ceeeEEEEE-CC-EEEEEeCC--CCCCCc---cceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECCEEEEE
Q 011998 83 PSA--RDSHTCSSW-KN-KIIVIGGE--DGHDYY---LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGKNLFVF 152 (473)
Q Consensus 83 P~~--R~~hs~~~~-~~-~IyV~GG~--~~~~~~---~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~ 152 (473)
+.. ..-+.++.. ++ .||+.+.. .....+ .+.+++||+.+.+-.+... ....++.-++++. -++++|+.
T Consensus 87 ~~~~~~~~~~~~~spdg~~l~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~--~~~~~~~~~~~~~s~dg~l~~~ 164 (349)
T 1jmx_B 87 PGEVGRSMYSFAISPDGKEVYATVNPTQRLNDHYVVKPPRLEVFSTADGLEAKPVR--TFPMPRQVYLMRAADDGSLYVA 164 (349)
T ss_dssp TTEEEECSSCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEEGGGGGGBCCSE--EEECCSSCCCEEECTTSCEEEE
T ss_pred cccccccccceEECCCCCEEEEEcccccccccccccCCCeEEEEECCCccccceee--eccCCCcccceeECCCCcEEEc
Confidence 110 111222332 44 55554421 000001 2579999987743211100 0111222222333 24557763
Q ss_pred ecccCCCCccccEEEEeCCCCcEEE
Q 011998 153 GGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 153 GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
++ +++++|+.+.+-..
T Consensus 165 ~~---------~i~~~d~~~~~~~~ 180 (349)
T 1jmx_B 165 GP---------DIYKMDVKTGKYTV 180 (349)
T ss_dssp SS---------SEEEECTTTCCEEE
T ss_pred cC---------cEEEEeCCCCceec
Confidence 22 38889988776544
No 77
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=84.03 E-value=26 Score=32.27 Aligned_cols=142 Identities=13% Similarity=0.035 Sum_probs=72.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC-CCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS-GNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~-g~~ 82 (473)
..+++||+.+. ...... +.. .-++++.. ++++|+.... ...+++||+.+.+.+.+... ...
T Consensus 50 ~~i~~~~~~~~-~~~~~~----~~~-~~~~l~~~~dg~l~v~~~~-----------~~~i~~~d~~~g~~~~~~~~~~~~ 112 (296)
T 3e5z_A 50 NRTWAWSDDGQ-LSPEMH----PSH-HQNGHCLNKQGHLIACSHG-----------LRRLERQREPGGEWESIADSFEGK 112 (296)
T ss_dssp TEEEEEETTSC-EEEEES----SCS-SEEEEEECTTCCEEEEETT-----------TTEEEEECSTTCCEEEEECEETTE
T ss_pred CEEEEEECCCC-eEEEEC----CCC-CcceeeECCCCcEEEEecC-----------CCeEEEEcCCCCcEEEEeeccCCC
Confidence 35778888877 554421 111 12233332 4677776531 14689999988887766432 011
Q ss_pred CCCceeeEEEEECCEEEEE----eCCC------C-CCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEE
Q 011998 83 PSARDSHTCSSWKNKIIVI----GGED------G-HDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLF 150 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~----GG~~------~-~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~Ly 150 (473)
+..+....++.-+++||+. |... . .......+|+||+. .+...+.. ....+ ...+.. +++++
T Consensus 113 ~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~~--~~~~~---~gi~~s~dg~~l 186 (296)
T 3e5z_A 113 KLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPIR--DRVKP---NGLAFLPSGNLL 186 (296)
T ss_dssp ECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEEC--CCSSE---EEEEECTTSCEE
T ss_pred CCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEeec--CCCCC---ccEEECCCCCEE
Confidence 1111112222236788886 4311 0 11113579999987 66555542 11111 223322 45555
Q ss_pred EEecccCCCCccccEEEEeCC-CCcE
Q 011998 151 VFGGFTDSQNLYDDLYMIDVD-SGLW 175 (473)
Q Consensus 151 V~GG~~~~~~~~ndv~~yd~~-t~~W 175 (473)
+.+.. .+.+++||+. +++.
T Consensus 187 v~~~~------~~~i~~~~~~~~g~~ 206 (296)
T 3e5z_A 187 VSDTG------DNATHRYCLNARGET 206 (296)
T ss_dssp EEETT------TTEEEEEEECSSSCE
T ss_pred EEeCC------CCeEEEEEECCCCcC
Confidence 44332 2468999986 5555
No 78
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=83.67 E-value=46 Score=34.82 Aligned_cols=109 Identities=11% Similarity=0.107 Sum_probs=59.4
Q ss_pred CcEEEEEC-CCC--eEEecccCCCCCC--c---ccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEE
Q 011998 5 RDLHILDT-SSH--TWISPSVRGEGPE--A---REGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWK 74 (473)
Q Consensus 5 ~dv~~yD~-~t~--~W~~l~~~~~~P~--~---R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~ 74 (473)
+.|+.+|. .+. .|+.-........ . ....+.++.+++||+.... ..++.+|..+. .|+
T Consensus 73 ~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~d------------g~l~alD~~tG~~~W~ 140 (571)
T 2ad6_A 73 NNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQAN------------GHLLALDAKTGKINWE 140 (571)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECTT------------SEEEEEETTTCCEEEE
T ss_pred CEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeCC------------CEEEEEECCCCCEEEE
Confidence 46999998 765 6886421100000 0 1122445678898887541 36899999877 587
Q ss_pred EeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEe
Q 011998 75 RATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 127 (473)
Q Consensus 75 ~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l 127 (473)
.-... .........+.++.++.+|+-.+... ...-..++.||..+.+ |+.-
T Consensus 141 ~~~~~-~~~~~~~~~~P~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 141 VEVCD-PKVGSTLTQAPFVAKDTVLMGCSGAE-LGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp EECCC-GGGTCBCCSCCEEETTEEEEECBCGG-GTCCCEEEEEETTTCCEEEEEE
T ss_pred ecCCC-CCccceeccCCEEECCEEEEEecCCc-cCCCCEEEEEECCCCcEEEEEc
Confidence 53211 00000112223456888877543211 1123578999998765 7654
No 79
>1jmx_B Amine dehydrogenase; oxidoreductase; HET: TRQ HEC; 1.90A {Pseudomonas putida} SCOP: b.69.2.2 PDB: 1jmz_B*
Probab=83.29 E-value=9.1 Score=35.83 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=41.3
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++++|+.++. ...++++|+.+.+....-..+. ...-+.++.. + ..+|+.+.. ...+++
T Consensus 10 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~~---~~~~~~~~~s~dg~~~~v~~~~------~~~i~~ 69 (349)
T 1jmx_B 10 GHEYMIVTNY-----------PNNLHVVDVASDTVYKSCVMPD---KFGPGTAMMAPDNRTAYVLNNH------YGDIYG 69 (349)
T ss_dssp TCEEEEEEET-----------TTEEEEEETTTTEEEEEEECSS---CCSSCEEEECTTSSEEEEEETT------TTEEEE
T ss_pred CCEEEEEeCC-----------CCeEEEEECCCCcEEEEEecCC---CCCCceeEECCCCCEEEEEeCC------CCcEEE
Confidence 5678888774 2579999999987654333211 0011333333 3 467777642 256999
Q ss_pred EECCCCCEEE
Q 011998 117 LDTDTLTWKE 126 (473)
Q Consensus 117 yD~~t~~W~~ 126 (473)
||+.+.+...
T Consensus 70 ~d~~t~~~~~ 79 (349)
T 1jmx_B 70 IDLDTCKNTF 79 (349)
T ss_dssp EETTTTEEEE
T ss_pred EeCCCCcEEE
Confidence 9999887543
No 80
>2dg1_A DRP35, lactonase; beta propeller, hydrolase; 1.72A {Staphylococcus aureus} SCOP: b.68.6.1 PDB: 2dg0_A 2dso_A
Probab=83.27 E-value=11 Score=35.60 Aligned_cols=143 Identities=10% Similarity=0.003 Sum_probs=73.4
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.|++||+.+.++...... + ...-++++.. ++++|+...... .....+++||+.+.....+.... ..
T Consensus 67 ~i~~~d~~~~~~~~~~~~---~-~~~~~~i~~~~dg~l~v~~~~~~-------~~~~~i~~~d~~~~~~~~~~~~~--~~ 133 (333)
T 2dg1_A 67 NIFKINPETKEIKRPFVS---H-KANPAAIKIHKDGRLFVCYLGDF-------KSTGGIFAATENGDNLQDIIEDL--ST 133 (333)
T ss_dssp EEEEECTTTCCEEEEEEC---S-SSSEEEEEECTTSCEEEEECTTS-------SSCCEEEEECTTSCSCEEEECSS--SS
T ss_pred EEEEEeCCCCcEEEEeeC---C-CCCcceEEECCCCcEEEEeCCCC-------CCCceEEEEeCCCCEEEEEEccC--cc
Confidence 477788877776654211 1 1112233332 467877754210 01246899999888765332211 11
Q ss_pred CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCc
Q 011998 85 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNL 161 (473)
Q Consensus 85 ~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~ 161 (473)
...-..++.. ++.+|+.............+|+||+.+.+...+... .. .-...+.. ++ .||+....
T Consensus 134 ~~~~~~i~~d~~g~l~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~~---~~~~i~~~~dg~~l~v~~~~------ 202 (333)
T 2dg1_A 134 AYCIDDMVFDSKGGFYFTDFRGYSTNPLGGVYYVSPDFRTVTPIIQN--IS---VANGIALSTDEKVLWVTETT------ 202 (333)
T ss_dssp CCCEEEEEECTTSCEEEEECCCBTTBCCEEEEEECTTSCCEEEEEEE--ES---SEEEEEECTTSSEEEEEEGG------
T ss_pred CCcccceEECCCCCEEEEeccccccCCCceEEEEeCCCCEEEEeecC--CC---cccceEECCCCCEEEEEeCC------
Confidence 1122223332 677887654321112246799999988777665320 11 11222322 33 47776432
Q ss_pred cccEEEEeCCC
Q 011998 162 YDDLYMIDVDS 172 (473)
Q Consensus 162 ~ndv~~yd~~t 172 (473)
.+.+++||+.+
T Consensus 203 ~~~i~~~d~~~ 213 (333)
T 2dg1_A 203 ANRLHRIALED 213 (333)
T ss_dssp GTEEEEEEECT
T ss_pred CCeEEEEEecC
Confidence 24589999854
No 81
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=83.01 E-value=40 Score=36.12 Aligned_cols=194 Identities=11% Similarity=0.146 Sum_probs=94.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCC---CCCCceeeCeEEEEECCCCeE--EEeecCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSS---NTNDEVYYNDLYILNTETFVW--KRATTSG 80 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~---~~~~~~~~~dv~~yd~~t~~W--~~l~~~g 80 (473)
.++++|..++++..... +..+.. ..+...++-++++...... ..........+|++++.+..- ..+...
T Consensus 190 ~i~v~dl~tg~~~~~~~----~~~~~~-~~~wspD~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~lgt~~~~~~lv~~~- 263 (741)
T 1yr2_A 190 TVKFVGVADGKPLADEL----KWVKFS-GLAWLGNDALLYSRFAEPKEGQAFQALNYNQTVWLHRLGTPQSADQPVFAT- 263 (741)
T ss_dssp EEEEEETTTCCEEEEEE----EEEESC-CCEESTTSEEEEEECCCC--------CCCCCEEEEEETTSCGGGCEEEECC-
T ss_pred EEEEEECCCCCCCCccC----CCceec-cEEEECCCEEEEEEecCcccccccccCCCCCEEEEEECCCCchhCEEEecc-
Confidence 58888988887765321 111111 1222222333343332110 001112245799999877642 122221
Q ss_pred CCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCC--C-EEEeeCCCCCCCCcceeEEEEECCEEEEEeccc
Q 011998 81 NPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTL--T-WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFT 156 (473)
Q Consensus 81 ~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~--~-W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~ 156 (473)
...+....+... -+++.+++...+... ..+++|++|+.+. . |+.+... ..... ......++.||+....
T Consensus 264 -~~~~~~~~~~~~SpDG~~l~~~~~~~~~-~~~~l~~~d~~~~~~~~~~~l~~~---~~~~~-~~~~~dg~~l~~~s~~- 336 (741)
T 1yr2_A 264 -PELPKRGHGASVSSDGRWVVITSSEGTD-PVNTVHVARVTNGKIGPVTALIPD---LKAQW-DFVDGVGDQLWFVSGD- 336 (741)
T ss_dssp -TTCTTCEEEEEECTTSCEEEEEEECTTC-SCCEEEEEEEETTEECCCEEEECS---SSSCE-EEEEEETTEEEEEECT-
T ss_pred -CCCCeEEEEEEECCCCCEEEEEEEccCC-CcceEEEEECCCCCCcccEEecCC---CCceE-EEEeccCCEEEEEECC-
Confidence 112222223222 255444444433221 3578999999877 7 8888641 11221 2223446667776543
Q ss_pred CCCCccccEEEEeCCC--CcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 157 DSQNLYDDLYMIDVDS--GLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t--~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
......++.+|+.+ ..|+.+.... . .. ...+.. .++.|++....+. ...+|.++..
T Consensus 337 --~~~~~~l~~~d~~~~~~~~~~l~~~~--~-~~--l~~~~~---~~~~lv~~~~~dg----~~~l~~~~~~ 394 (741)
T 1yr2_A 337 --GAPLKKIVRVDLSGSTPRFDTVVPES--K-DN--LESVGI---AGNRLFASYIHDA----KSQVLAFDLD 394 (741)
T ss_dssp --TCTTCEEEEEECSSSSCEEEEEECCC--S-SE--EEEEEE---EBTEEEEEEEETT----EEEEEEEETT
T ss_pred --CCCCCEEEEEeCCCCccccEEEecCC--C-Ce--EEEEEE---ECCEEEEEEEECC----EEEEEEEeCC
Confidence 12345699999988 5798886531 1 11 122222 2567776654332 3457777753
No 82
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=82.93 E-value=30 Score=33.97 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=62.9
Q ss_pred EEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceE
Q 011998 35 AALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 35 a~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv 114 (473)
+...++..++.|+.+ ..+.+||..+.+-...-.. ....-.+..+++.+++.|+.++ .+
T Consensus 138 ~~~~d~~~l~~g~~d-----------g~i~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~l~sg~~dg------~i 195 (435)
T 1p22_A 138 CLQYDDQKIVSGLRD-----------NTIKIWDKNTLECKRILTG-----HTGSVLCLQYDERVIITGSSDS------TV 195 (435)
T ss_dssp EEECCSSEEEEEESS-----------SCEEEEESSSCCEEEEECC-----CSSCEEEEECCSSEEEEEETTS------CE
T ss_pred EEEECCCEEEEEeCC-----------CeEEEEeCCCCeEEEEEcC-----CCCcEEEEEECCCEEEEEcCCC------eE
Confidence 334467778888742 4688999888764433221 1222344445788888888654 47
Q ss_pred EEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 115 HILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 115 ~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
.+||..+.+....-. .....-.++.+.+.+++.|+.+ ..+.+||+.+..
T Consensus 196 ~vwd~~~~~~~~~~~-----~h~~~v~~l~~~~~~l~s~s~d------g~i~vwd~~~~~ 244 (435)
T 1p22_A 196 RVWDVNTGEMLNTLI-----HHCEAVLHLRFNNGMMVTCSKD------RSIAVWDMASPT 244 (435)
T ss_dssp EEEESSSCCEEEEEC-----CCCSCEEEEECCTTEEEEEETT------SCEEEEECSSSS
T ss_pred EEEECCCCcEEEEEc-----CCCCcEEEEEEcCCEEEEeeCC------CcEEEEeCCCCC
Confidence 889988876533321 1122223344455567777752 348888887654
No 83
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=82.92 E-value=28 Score=31.76 Aligned_cols=181 Identities=12% Similarity=0.108 Sum_probs=89.3
Q ss_pred cEEEEECCCCeEEecccCCCCCC-cccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPE-AREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~-~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
.|.+||+...........+..+. ...-+.++.. ++.+|+.+.. ....+++||........+...
T Consensus 52 ~i~~~d~~g~~~~~~~~~~~~~~~~~~p~~i~~~~~~g~l~v~~~~----------~~~~i~~~d~~g~~~~~~~~~--- 118 (286)
T 1q7f_A 52 RIQIFDKEGRFKFQFGECGKRDSQLLYPNRVAVVRNSGDIIVTERS----------PTHQIQIYNQYGQFVRKFGAT--- 118 (286)
T ss_dssp EEEEECTTSCEEEEECCBSSSTTCBSSEEEEEEETTTTEEEEEECG----------GGCEEEEECTTSCEEEEECTT---
T ss_pred EEEEECCCCcEEEEecccCCCcccccCceEEEEEcCCCeEEEEcCC----------CCCEEEEECCCCcEEEEecCc---
Confidence 46777776544333321111111 1122344443 5789988742 024688999655443333221
Q ss_pred CCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCC
Q 011998 83 PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN 160 (473)
Q Consensus 83 P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~ 160 (473)
. ...-+.++.. ++++||.... .+.+++||+.......+...+.... -...+.. +++||+....
T Consensus 119 ~-~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~g~~~~~~~~~~~~~~---p~~i~~~~~g~l~v~~~~----- 183 (286)
T 1q7f_A 119 I-LQHPRGVTVDNKGRIIVVECK------VMRVIIFDQNGNVLHKFGCSKHLEF---PNGVVVNDKQEIFISDNR----- 183 (286)
T ss_dssp T-CSCEEEEEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECTTTCSS---EEEEEECSSSEEEEEEGG-----
T ss_pred c-CCCceEEEEeCCCCEEEEECC------CCEEEEEcCCCCEEEEeCCCCccCC---cEEEEECCCCCEEEEECC-----
Confidence 1 1122334333 5778887542 2568999977655554442111111 1223332 4678887543
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
.+.+++||+.......+...+.. ....+.+++ .++.||+....+. ..+.+|+..
T Consensus 184 -~~~i~~~~~~g~~~~~~~~~g~~----~~p~~i~~d--~~G~l~v~~~~~~-----~~i~~~~~~ 237 (286)
T 1q7f_A 184 -AHCVKVFNYEGQYLRQIGGEGIT----NYPIGVGIN--SNGEILIADNHNN-----FNLTIFTQD 237 (286)
T ss_dssp -GTEEEEEETTCCEEEEESCTTTS----CSEEEEEEC--TTCCEEEEECSSS-----CEEEEECTT
T ss_pred -CCEEEEEcCCCCEEEEEccCCcc----CCCcEEEEC--CCCCEEEEeCCCC-----EEEEEECCC
Confidence 24589999866544444332211 112344443 3567887754331 146666643
No 84
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=82.74 E-value=16 Score=38.74 Aligned_cols=66 Identities=6% Similarity=-0.087 Sum_probs=35.7
Q ss_pred ceEEEEECCC-CCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 112 SDVHILDTDT-LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 112 ndv~~yD~~t-~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
..++++|+.+ .+-..+... ..........+.-+++.++++.... .....+++.+|+.+.+...+..
T Consensus 263 ~~l~~~d~~~~~~~~~~~~~--~~~~~~~~~~~~pDg~~l~~~~~~~-~~~~~~i~~~d~~~g~~~~~~~ 329 (741)
T 2ecf_A 263 VKLGVISPAEQAQTQWIDLG--KEQDIYLARVNWRDPQHLSFQRQSR-DQKKLDLVEVTLASNQQRVLAH 329 (741)
T ss_dssp EEEEEECSSTTCCCEEECCC--SCSSEEEEEEEEEETTEEEEEEEET-TSSEEEEEEEETTTCCEEEEEE
T ss_pred eEEEEEECCCCCceEEecCC--CCcceEEEEEEeCCCCEEEEEEecc-cCCeEEEEEEECCCCceEEEEE
Confidence 3789999988 776555421 0111111122223444444433311 1234679999999988777654
No 85
>4ery_A WD repeat-containing protein 5; WD40, WIN motif, beta propeller, 3-10 helix, lysine methyltransferase, RBBP5, ASH2L, core complex; 1.30A {Homo sapiens} PDB: 2h6k_A* 2h68_A* 2h6q_A* 3eg6_A 4erq_A 2h6n_A 4erz_A 4es0_A 4esg_A 4ewr_A 2gnq_A 2xl2_A 2xl3_A 3uvk_A* 3psl_A* 3uvl_A 3uvm_A 3uvn_A 3uvo_A 2h14_A ...
Probab=82.53 E-value=30 Score=31.92 Aligned_cols=145 Identities=16% Similarity=0.160 Sum_probs=74.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+.+-...-.. . ...-.++.+ ++.+++.|+.++ .+.+
T Consensus 76 ~~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~---~--~~~v~~~~~~~~~~~l~s~~~d~------~i~i 133 (312)
T 4ery_A 76 DSNLLVSASDD-----------KTLKIWDVSSGKCLKTLKG---H--SNYVFCCNFNPQSNLIVSGSFDE------SVRI 133 (312)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC---C--SSCEEEEEECSSSSEEEEEETTS------CEEE
T ss_pred CCCEEEEECCC-----------CEEEEEECCCCcEEEEEcC---C--CCCEEEEEEcCCCCEEEEEeCCC------cEEE
Confidence 45677777742 3688899887754332111 1 111122222 566777777653 4788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 194 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~ 194 (473)
||+.+.+-...-. .....-..+.+ ++.+++.|+.. ..+.+||+.+.+......... ... ....
T Consensus 134 wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~~~~~~~--~~~--~~~~ 198 (312)
T 4ery_A 134 WDVKTGKCLKTLP-----AHSDPVSAVHFNRDGSLIVSSSYD------GLCRIWDTASGQCLKTLIDDD--NPP--VSFV 198 (312)
T ss_dssp EETTTCCEEEEEC-----CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEEEEECCSS--CCC--EEEE
T ss_pred EECCCCEEEEEec-----CCCCcEEEEEEcCCCCEEEEEeCC------CcEEEEECCCCceeeEEeccC--CCc--eEEE
Confidence 9988776433221 11111222223 45577777752 248899998876433222111 111 1222
Q ss_pred EeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 195 CLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 195 ~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.+. .++.+++.|+.+. .+.++|....
T Consensus 199 ~~~--~~~~~l~~~~~d~------~i~iwd~~~~ 224 (312)
T 4ery_A 199 KFS--PNGKYILAATLDN------TLKLWDYSKG 224 (312)
T ss_dssp EEC--TTSSEEEEEETTT------EEEEEETTTT
T ss_pred EEC--CCCCEEEEEcCCC------eEEEEECCCC
Confidence 222 3566667776554 3667776543
No 86
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=82.38 E-value=27 Score=37.27 Aligned_cols=134 Identities=10% Similarity=0.043 Sum_probs=68.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+.+||..+.+....-. ...... .++... ++..+++|+. ...+.+||..+.+....-.. .
T Consensus 35 g~v~iwd~~~~~~~~~~~---~~~~~v-~~~~~s~~~~~l~~~~~-----------dg~i~vw~~~~~~~~~~~~~---~ 96 (814)
T 3mkq_A 35 GRVEIWNYETQVEVRSIQ---VTETPV-RAGKFIARKNWIIVGSD-----------DFRIRVFNYNTGEKVVDFEA---H 96 (814)
T ss_dssp SEEEEEETTTTEEEEEEE---CCSSCE-EEEEEEGGGTEEEEEET-----------TSEEEEEETTTCCEEEEEEC---C
T ss_pred CEEEEEECCCCceEEEEe---cCCCcE-EEEEEeCCCCEEEEEeC-----------CCeEEEEECCCCcEEEEEec---C
Confidence 357788887776543321 111111 122222 4566777773 14688999988876443221 1
Q ss_pred CCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCC-CEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCC
Q 011998 84 SARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTL-TWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDS 158 (473)
Q Consensus 84 ~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~-~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~ 158 (473)
...-.+..+ ++..++.|+.+ ..+.+||..+. .....-. .....-.+++.. ++.+++.|+.+
T Consensus 97 --~~~v~~~~~s~~~~~l~~~~~d------g~i~vw~~~~~~~~~~~~~----~~~~~v~~~~~~p~~~~~l~~~~~d-- 162 (814)
T 3mkq_A 97 --PDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENNWALEQTFE----GHEHFVMCVAFNPKDPSTFASGCLD-- 162 (814)
T ss_dssp --SSCEEEEEECSSSSEEEEEETT------SEEEEEEGGGTSEEEEEEE----CCSSCEEEEEEETTEEEEEEEEETT--
T ss_pred --CCCEEEEEEeCCCCEEEEEcCC------CEEEEEECCCCceEEEEEc----CCCCcEEEEEEEcCCCCEEEEEeCC--
Confidence 111222222 55566666643 35778888765 2222211 111122233333 34577777652
Q ss_pred CCccccEEEEeCCCCc
Q 011998 159 QNLYDDLYMIDVDSGL 174 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~~ 174 (473)
..+.+||+.+..
T Consensus 163 ----g~v~vwd~~~~~ 174 (814)
T 3mkq_A 163 ----RTVKVWSLGQST 174 (814)
T ss_dssp ----SEEEEEETTCSS
T ss_pred ----CeEEEEECCCCc
Confidence 348888886654
No 87
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=82.21 E-value=4.2 Score=39.03 Aligned_cols=136 Identities=9% Similarity=0.126 Sum_probs=62.2
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe-EEEeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV-WKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~-W~~l~~~g~ 81 (473)
..+.+||..+..|..+... ......-..+.+ ++.+++.|+.+ ..+.+||+.+.. |..+....
T Consensus 33 ~~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~s~d-----------~~v~vwd~~~~~~~~~~~~~~- 97 (377)
T 3dwl_C 33 NQVELYEQDGNGWKHARTF---SDHDKIVTCVDWAPKSNRIVTCSQD-----------RNAYVYEKRPDGTWKQTLVLL- 97 (377)
T ss_dssp SCBCEEEEETTEEEECCCB---CCCSSCEEEEEECTTTCCEEEEETT-----------SSEEEC------CCCCEEECC-
T ss_pred CEEEEEEccCCceEEEEEE---ecCCceEEEEEEeCCCCEEEEEeCC-----------CeEEEEEcCCCCceeeeeEec-
Confidence 3577888888887765422 111111122222 45677777742 357888888766 44333221
Q ss_pred CCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCC--CcceeEEEEE-CCEEEEEecc
Q 011998 82 PPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLS--PRAGHSTVAF-GKNLFVFGGF 155 (473)
Q Consensus 82 ~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~--~R~~hs~~~~-~~~LyV~GG~ 155 (473)
.....-.++.+ ++.+++.|+.++ .+.+||..+.+ |..... +.. ...-.+++.. ++++++.|+.
T Consensus 98 --~~~~~v~~~~~~~~~~~l~~~~~d~------~i~iwd~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~l~~~~~ 166 (377)
T 3dwl_C 98 --RLNRAATFVRWSPNEDKFAVGSGAR------VISVCYFEQENDWWVSKH---LKRPLRSTILSLDWHPNNVLLAAGCA 166 (377)
T ss_dssp --CCSSCEEEEECCTTSSCCEEEESSS------CEEECCC-----CCCCEE---ECSSCCSCEEEEEECTTSSEEEEEES
T ss_pred --ccCCceEEEEECCCCCEEEEEecCC------eEEEEEECCcccceeeeE---eecccCCCeEEEEEcCCCCEEEEEeC
Confidence 11112223333 566777777543 36777776654 322221 111 1122222332 4557777775
Q ss_pred cCCCCccccEEEEeCCC
Q 011998 156 TDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 156 ~~~~~~~ndv~~yd~~t 172 (473)
+ ..+.+||+..
T Consensus 167 d------~~i~iwd~~~ 177 (377)
T 3dwl_C 167 D------RKAYVLSAYV 177 (377)
T ss_dssp S------SCEEEEEECC
T ss_pred C------CEEEEEEEEe
Confidence 2 2477888753
No 88
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=81.70 E-value=26 Score=32.42 Aligned_cols=151 Identities=8% Similarity=-0.013 Sum_probs=69.5
Q ss_pred CcEEEEECCC-CeEEecc--cCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECC--CCeEEEee
Q 011998 5 RDLHILDTSS-HTWISPS--VRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTE--TFVWKRAT 77 (473)
Q Consensus 5 ~dv~~yD~~t-~~W~~l~--~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~--t~~W~~l~ 77 (473)
..+.+||..+ .++.... .. ..+....-..++.. + ..+|+.+.. .+.+.+||+. +.++..+.
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~pdg~~l~~~~~~-----------~~~i~~~~~~~~~g~~~~~~ 218 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEV-TTVEGAGPRHMVFHPNEQYAYCVNEL-----------NSSVDVWELKDPHGNIECVQ 218 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEE-ECSTTCCEEEEEECTTSSEEEEEETT-----------TTEEEEEESSCTTSCCEEEE
T ss_pred CEEEEEEecCCCceeeeccccc-ccCCCCCcceEEECCCCCEEEEEeCC-----------CCEEEEEEecCCCCcEEEEe
Confidence 4578888877 6555321 00 11111111122222 3 357777642 2467888874 45443322
Q ss_pred cCCCCCCC----ceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECC--CCCEEEeeCCCCCCCCcceeEEEEE-CCE
Q 011998 78 TSGNPPSA----RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMVLSPRAGHSTVAF-GKN 148 (473)
Q Consensus 78 ~~g~~P~~----R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~--t~~W~~l~~~g~~p~~R~~hs~~~~-~~~ 148 (473)
.....|.. .....++.. +..||+.+.. -+.+.+||+. +.+++.+.. .+....-..++.. +++
T Consensus 219 ~~~~~~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~---~~~~~~~~~~~~s~dg~ 289 (343)
T 1ri6_A 219 TLDMMPENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGF---QPTETQPRGFNVDHSGK 289 (343)
T ss_dssp EEECSCTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEE---EECSSSCCCEEECTTSS
T ss_pred eccccCccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeee---ecCCCccceEEECCCCC
Confidence 21111211 111223322 3467766532 2467888877 556666543 1111111122222 344
Q ss_pred -EEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 149 -LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 149 -LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
||+.++. +. .-.+|.+|+++++++.+..
T Consensus 290 ~l~~~~~~-~~---~v~v~~~d~~~g~~~~~~~ 318 (343)
T 1ri6_A 290 YLIAAGQK-SH---HISVYEIVGEQGLLHEKGR 318 (343)
T ss_dssp EEEEECTT-TC---EEEEEEEETTTTEEEEEEE
T ss_pred EEEEecCC-CC---eEEEEEEcCCCceeeEccc
Confidence 5555432 11 1225555888888887765
No 89
>3dwl_C Actin-related protein 2/3 complex subunit 1; propellor, actin-binding, ATP-binding, cytoskeleton, nucleot binding, WD repeat; HET: ATP; 3.78A {Schizosaccharomyces pombe}
Probab=80.99 E-value=4.1 Score=39.16 Aligned_cols=149 Identities=17% Similarity=0.268 Sum_probs=69.9
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+..|..+.... .....-.++.+ ++.+++.|+.++ .+.+
T Consensus 22 ~g~~l~~~~~d-----------~~i~iw~~~~~~~~~~~~~~---~h~~~v~~~~~s~~~~~l~s~s~d~------~v~v 81 (377)
T 3dwl_C 22 QRTEFVTTTAT-----------NQVELYEQDGNGWKHARTFS---DHDKIVTCVDWAPKSNRIVTCSQDR------NAYV 81 (377)
T ss_dssp SSSEEECCCSS-----------SCBCEEEEETTEEEECCCBC---CCSSCEEEEEECTTTCCEEEEETTS------SEEE
T ss_pred CCCEEEEecCC-----------CEEEEEEccCCceEEEEEEe---cCCceEEEEEEeCCCCEEEEEeCCC------eEEE
Confidence 45666777642 35778888888887765441 11222233333 567777777543 4778
Q ss_pred EECCCCC-EEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCc-EEEEeeCCCCCCCcceee
Q 011998 117 LDTDTLT-WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITTGEGPSARFSVA 192 (473)
Q Consensus 117 yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~-W~~v~~~g~~P~~R~~~~ 192 (473)
||..+.. |..... +......-.++.+ ++++++.|+.+ ..+.+||+.+.. |..+..... +... ...
T Consensus 82 wd~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~l~~~~~d------~~i~iwd~~~~~~~~~~~~~~~-~h~~-~v~ 150 (377)
T 3dwl_C 82 YEKRPDGTWKQTLV---LLRLNRAATFVRWSPNEDKFAVGSGA------RVISVCYFEQENDWWVSKHLKR-PLRS-TIL 150 (377)
T ss_dssp C------CCCCEEE---CCCCSSCEEEEECCTTSSCCEEEESS------SCEEECCC-----CCCCEEECS-SCCS-CEE
T ss_pred EEcCCCCceeeeeE---ecccCCceEEEEECCCCCEEEEEecC------CeEEEEEECCcccceeeeEeec-ccCC-CeE
Confidence 8887766 443332 1111112222222 35566676652 247788887654 332222111 1111 122
Q ss_pred EEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 193 GDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 193 a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
++.+. .++.+++.|+.+.. +.+++..
T Consensus 151 ~~~~~--~~~~~l~~~~~d~~------i~iwd~~ 176 (377)
T 3dwl_C 151 SLDWH--PNNVLLAAGCADRK------AYVLSAY 176 (377)
T ss_dssp EEEEC--TTSSEEEEEESSSC------EEEEEEC
T ss_pred EEEEc--CCCCEEEEEeCCCE------EEEEEEE
Confidence 22232 35667777776543 5566654
No 90
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=80.72 E-value=38 Score=31.81 Aligned_cols=150 Identities=12% Similarity=0.111 Sum_probs=69.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CC-EEEEEecCCCCCCCCCceeeCeEEEEECC-CCeEEEee---c
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GK-RLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRAT---T 78 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~-~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~---~ 78 (473)
..+++||+.+.+++.+... .....+.. .++.. ++ .||+.+.. ...+.+|++. +.+...+. .
T Consensus 63 ~~v~~~~~~~g~~~~~~~~-~~~~~~p~-~~a~spdg~~l~~~~~~-----------~~~v~v~~~~~~g~~~~~~~~~~ 129 (347)
T 3hfq_A 63 GGIAAWQIDGQTAHKLNTV-VAPGTPPA-YVAVDEARQLVYSANYH-----------KGTAEVMKIAADGALTLTDTVQH 129 (347)
T ss_dssp EEEEEEEEETTEEEEEEEE-EEESCCCS-EEEEETTTTEEEEEETT-----------TTEEEEEEECTTSCEEEEEEEEC
T ss_pred ceEEEEEecCCcEEEeeee-ecCCCCCE-EEEECCCCCEEEEEeCC-----------CCEEEEEEeCCCCCeeecceeec
Confidence 4678888888877665321 00111112 23333 34 56666532 1357777774 33443332 2
Q ss_pred CCCCCCCc----eeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECC-CCCEEEeeCCCCCCCC-cceeEEEEECCE-EE
Q 011998 79 SGNPPSAR----DSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTWKELNTSGMVLSP-RAGHSTVAFGKN-LF 150 (473)
Q Consensus 79 ~g~~P~~R----~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~-t~~W~~l~~~g~~p~~-R~~hs~~~~~~~-Ly 150 (473)
.+..|.+| .-+.++.. ++++|+.+.. -+.+++||+. +.+...+.... .+.. .-.+.+..-+++ ||
T Consensus 130 ~~~~p~~~~~~~~~~~~~~spdg~l~v~~~~------~~~v~~~~~~~~g~~~~~~~~~-~~~g~~p~~~~~spdg~~l~ 202 (347)
T 3hfq_A 130 SGHGPRPEQDGSHIHYTDLTPDNRLAVIDLG------SDKVYVYNVSDAGQLSEQSVLT-MEAGFGPRHLVFSPDGQYAF 202 (347)
T ss_dssp CCCCSSTTCSSCCEEEEEECTTSCEEEEETT------TTEEEEEEECTTSCEEEEEEEE-CCTTCCEEEEEECTTSSEEE
T ss_pred CCCCCCccccCCCceEEEECCCCcEEEEeCC------CCEEEEEEECCCCcEEEeeeEE-cCCCCCCceEEECCCCCEEE
Confidence 22222222 12333333 5667776542 2468888887 56655443200 1111 111222222444 77
Q ss_pred EEecccCCCCccccEEEEeCC--CCcEEEEee
Q 011998 151 VFGGFTDSQNLYDDLYMIDVD--SGLWTKVIT 180 (473)
Q Consensus 151 V~GG~~~~~~~~ndv~~yd~~--t~~W~~v~~ 180 (473)
+.+... +.+.+|++. +++++.+..
T Consensus 203 v~~~~~------~~v~v~~~~~~~g~~~~~~~ 228 (347)
T 3hfq_A 203 LAGELS------SQIASLKYDTQTGAFTQLGI 228 (347)
T ss_dssp EEETTT------TEEEEEEEETTTTEEEEEEE
T ss_pred EEeCCC------CEEEEEEecCCCCceEEeee
Confidence 765431 235555544 577665543
No 91
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=80.40 E-value=39 Score=31.82 Aligned_cols=145 Identities=14% Similarity=0.092 Sum_probs=73.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+++.++.|+. ...+.+||..+..-...... ....-.+++.. ++++++.|+.++ .+.+|
T Consensus 133 dg~~l~~g~~-----------dg~v~i~~~~~~~~~~~~~~----~~~~v~~~~~spdg~~lasg~~dg------~i~iw 191 (321)
T 3ow8_A 133 DSQYLATGTH-----------VGKVNIFGVESGKKEYSLDT----RGKFILSIAYSPDGKYLASGAIDG------IINIF 191 (321)
T ss_dssp TSSEEEEECT-----------TSEEEEEETTTCSEEEEEEC----SSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred CCCEEEEEcC-----------CCcEEEEEcCCCceeEEecC----CCceEEEEEECCCCCEEEEEcCCC------eEEEE
Confidence 4566677764 23578888877653322111 11111222222 677788887653 47889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|+.+.+-...-. + . ...-.+++.. ++++++.|+.+ ..+.+||+.+......-. + .... ...+.+
T Consensus 192 d~~~~~~~~~~~-~--h-~~~v~~l~~spd~~~l~s~s~d------g~i~iwd~~~~~~~~~~~-~--h~~~--v~~~~~ 256 (321)
T 3ow8_A 192 DIATGKLLHTLE-G--H-AMPIRSLTFSPDSQLLVTASDD------GYIKIYDVQHANLAGTLS-G--HASW--VLNVAF 256 (321)
T ss_dssp ETTTTEEEEEEC-C--C-SSCCCEEEECTTSCEEEEECTT------SCEEEEETTTCCEEEEEC-C--CSSC--EEEEEE
T ss_pred ECCCCcEEEEEc-c--c-CCceeEEEEcCCCCEEEEEcCC------CeEEEEECCCcceeEEEc-C--CCCc--eEEEEE
Confidence 988775432211 0 0 1111122222 45677777752 248889988765433221 1 1111 122222
Q ss_pred ccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 197 DPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
. .++.+++.|+.+.. +.++|..+
T Consensus 257 s--p~~~~l~s~s~D~~------v~iwd~~~ 279 (321)
T 3ow8_A 257 C--PDDTHFVSSSSDKS------VKVWDVGT 279 (321)
T ss_dssp C--TTSSEEEEEETTSC------EEEEETTT
T ss_pred C--CCCCEEEEEeCCCc------EEEEeCCC
Confidence 1 35667777776653 56666654
No 92
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=80.32 E-value=44 Score=35.86 Aligned_cols=125 Identities=15% Similarity=0.199 Sum_probs=70.0
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCCC-----CCceeeEEEEECCEEEEEeCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPP-----SARDSHTCSSWKNKIIVIGGEDG 106 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P-----~~R~~hs~~~~~~~IyV~GG~~~ 106 (473)
+-++.++.||+.... ..++.+|..|. .|+.-....... ......+.++.+++||+-..
T Consensus 65 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~--- 129 (689)
T 1yiq_A 65 TPIVVDGVMYTTGPF------------SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL--- 129 (689)
T ss_dssp CCEEETTEEEEECGG------------GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT---
T ss_pred cCEEECCEEEEEcCC------------CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc---
Confidence 345678999997652 45899998776 587532211000 00111233556888887532
Q ss_pred CCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc--EEEE
Q 011998 107 HDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKV 178 (473)
Q Consensus 107 ~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v 178 (473)
-..++.+|..|.+ |+.-.............+.++.++.+|+-.+. ........++.||.++++ |+.-
T Consensus 130 ----dg~l~AlDa~TG~~~W~~~~~~~~~~~~~~~~sP~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 130 ----DGRLEAIDAKTGQRAWSVDTRADHKRSYTITGAPRVVNGKVVIGNGG-AEFGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ----TSEEEEEETTTCCEEEEEECCSCTTSCCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeecCcCCCCCCccccCCcEEECCEEEEEeCC-CccCCCCEEEEEECCCCcEEEEec
Confidence 2468999998775 77643200001111122335568887763322 111234569999999875 8764
No 93
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=80.07 E-value=35 Score=36.70 Aligned_cols=110 Identities=9% Similarity=0.023 Sum_probs=63.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++.|+++||.. +-+++||+.+.+++.+...+ .+....-.++... ++.|++- .. +.+.+|
T Consensus 482 ~g~lWi~~~t~-----------~Gl~~~d~~~~~~~~~~~~~-~~~~~~~~~i~~d~~g~lWig-t~-------~Gl~~~ 541 (758)
T 3ott_A 482 EGNVWVLLYNN-----------KGIDKINPRTREVTKLFADE-LTGEKSPNYLLCDEDGLLWVG-FH-------GGVMRI 541 (758)
T ss_dssp TSCEEEEETTC-----------SSEEEEETTTTEEEEECTTT-SCGGGCEEEEEECTTSCEEEE-ET-------TEEEEE
T ss_pred CCCEEEEccCC-----------CCcEEEeCCCCceEEecCCC-cCCCcccceEEECCCCCEEEE-ec-------CceEEE
Confidence 36788877731 35899999999998874321 1111112223332 5778863 21 348899
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
|+.+.+++.... ..+|. ..-.+++.-+++||+-.. +.+.+||+++.+....
T Consensus 542 ~~~~~~~~~~~~-~gl~~-~~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~ 592 (758)
T 3ott_A 542 NPKDESQQSISF-GSFSN-NEILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQ 592 (758)
T ss_dssp CC--CCCCBCCC-CC----CCEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC
T ss_pred ecCCCceEEecc-cCCCc-cceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEe
Confidence 999888766542 22332 223334444677887543 2389999999877654
No 94
>3hfq_A Uncharacterized protein LP_2219; Q88V64_lacpl, NESG, LPR118, structural genomics, PSI-2, protein structure initiative; 1.96A {Lactobacillus plantarum}
Probab=79.45 E-value=18 Score=34.07 Aligned_cols=108 Identities=9% Similarity=0.054 Sum_probs=49.4
Q ss_pred EEEEECCCCeEEEeecCCCCCCC---ceeeEEEEE--CC-EEEEEeCCCCCCCccceEEEEECCC-CCEEEeeCCCCCCC
Q 011998 63 LYILNTETFVWKRATTSGNPPSA---RDSHTCSSW--KN-KIIVIGGEDGHDYYLSDVHILDTDT-LTWKELNTSGMVLS 135 (473)
Q Consensus 63 v~~yd~~t~~W~~l~~~g~~P~~---R~~hs~~~~--~~-~IyV~GG~~~~~~~~ndv~~yD~~t-~~W~~l~~~g~~p~ 135 (473)
+|.++..+.++..+......|.. ........+ ++ .||+.+.. -+.+.+||... ..++.+.. .+.
T Consensus 213 v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~~spdG~~l~v~~~~------~~~v~v~~~~~~g~~~~~~~---~~~ 283 (347)
T 3hfq_A 213 SLKYDTQTGAFTQLGIVKTIPADYTAHNGAAAIRLSHDGHFLYVSNRG------YNTLAVFAVTADGHLTLIQQ---IST 283 (347)
T ss_dssp EEEEETTTTEEEEEEEEESSCTTCCSCCEEEEEEECTTSCEEEEEEET------TTEEEEEEECGGGCEEEEEE---EEC
T ss_pred EEEecCCCCceEEeeeeeecCCCCCCCCcceeEEECCCCCEEEEEeCC------CCEEEEEEECCCCcEEEeEE---Eec
Confidence 44445546777655432212221 112222233 44 57776542 25678888752 34554432 111
Q ss_pred -CcceeEEEEE-CCE-EEEEecccCCCCccccEEEE--eCCCCcEEEEeeCCCCC
Q 011998 136 -PRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMI--DVDSGLWTKVITTGEGP 185 (473)
Q Consensus 136 -~R~~hs~~~~-~~~-LyV~GG~~~~~~~~ndv~~y--d~~t~~W~~v~~~g~~P 185 (473)
...-..++.. +++ ||+.+.. . +.+.+| |.++++-..+......|
T Consensus 284 ~~~~~~~~~~spdg~~l~v~~~~-~-----~~v~v~~~d~~tg~l~~~~~~~~~p 332 (347)
T 3hfq_A 284 EGDFPRDFDLDPTEAFVVVVNQN-T-----DNATLYARDLTSGKLSLLQKDVTVP 332 (347)
T ss_dssp SSSCCCEEEECTTSSEEEEEETT-T-----TEEEEEEECTTTCCEEEEEEEEECT
T ss_pred CCCCcCeEEECCCCCEEEEEEcC-C-----CcEEEEEEeCCCCeEEecccceecC
Confidence 1111223332 344 6655432 1 234445 77888887776533333
No 95
>1ri6_A Putative isomerase YBHE; 7-bladed propeller, enzyme, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.00A {Escherichia coli} SCOP: b.69.11.1
Probab=79.39 E-value=39 Score=31.15 Aligned_cols=107 Identities=7% Similarity=-0.009 Sum_probs=51.0
Q ss_pred CeEEEEECCC-CeEEEee--cCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEEEECC--CCCEEEeeCCCCC
Q 011998 61 NDLYILNTET-FVWKRAT--TSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTD--TLTWKELNTSGMV 133 (473)
Q Consensus 61 ~dv~~yd~~t-~~W~~l~--~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~yD~~--t~~W~~l~~~g~~ 133 (473)
..+++||+.+ .++..+. .... +....-..++.. + ..+|+.+.. .+.+.+||.. +.++..+......
T Consensus 151 ~~v~~~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~pdg~~l~~~~~~------~~~i~~~~~~~~~g~~~~~~~~~~~ 223 (343)
T 1ri6_A 151 DRICLFTVSDDGHLVAQDPAEVTT-VEGAGPRHMVFHPNEQYAYCVNEL------NSSVDVWELKDPHGNIECVQTLDMM 223 (343)
T ss_dssp TEEEEEEECTTSCEEEEEEEEEEC-STTCCEEEEEECTTSSEEEEEETT------TTEEEEEESSCTTSCCEEEEEEECS
T ss_pred CEEEEEEecCCCceeeeccccccc-CCCCCcceEEECCCCCEEEEEeCC------CCEEEEEEecCCCCcEEEEeecccc
Confidence 4688999887 6665432 1100 111111122222 3 457776542 2467888874 4555433221112
Q ss_pred CCC----cceeEEEEE-CC-EEEEEecccCCCCccccEEEEeCC--CCcEEEEee
Q 011998 134 LSP----RAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVD--SGLWTKVIT 180 (473)
Q Consensus 134 p~~----R~~hs~~~~-~~-~LyV~GG~~~~~~~~ndv~~yd~~--t~~W~~v~~ 180 (473)
+.. .....++.. ++ .||+.+.. .+.+.+||+. +.+++.+..
T Consensus 224 ~~~~~~~~~~~~i~~s~dg~~l~v~~~~------~~~i~v~d~~~~~~~~~~~~~ 272 (343)
T 1ri6_A 224 PENFSDTRWAADIHITPDGRHLYACDRT------ASLITVFSVSEDGSVLSKEGF 272 (343)
T ss_dssp CTTCCSCCCEEEEEECTTSSEEEEEETT------TTEEEEEEECTTSCCEEEEEE
T ss_pred CccccccCCccceEECCCCCEEEEEecC------CCEEEEEEEcCCCCceEEeee
Confidence 221 111123332 23 56665532 2358888887 556766654
No 96
>3u4y_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomi CS, MCSG; 2.99A {Desulfotomaculum acetoxidans}
Probab=79.12 E-value=40 Score=31.18 Aligned_cols=111 Identities=8% Similarity=-0.079 Sum_probs=61.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~ 116 (473)
.+.+|+.++. .+.+.+||+.+.+.......+ .....++.. + ..+|+.+..+ ..+++
T Consensus 9 ~~~~~v~~~~-----------~~~v~~~d~~~~~~~~~~~~~-----~~~~~~~~s~dg~~l~~~~~~~------~~i~~ 66 (331)
T 3u4y_A 9 SNFGIVVEQH-----------LRRISFFSTDTLEILNQITLG-----YDFVDTAITSDCSNVVVTSDFC------QTLVQ 66 (331)
T ss_dssp CCEEEEEEGG-----------GTEEEEEETTTCCEEEEEECC-----CCEEEEEECSSSCEEEEEESTT------CEEEE
T ss_pred CCEEEEEecC-----------CCeEEEEeCcccceeeeEEcc-----CCcceEEEcCCCCEEEEEeCCC------CeEEE
Confidence 4678888763 257999999999886654432 112223222 4 4577776532 37899
Q ss_pred EECCCCCE-E-EeeCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 117 LDTDTLTW-K-ELNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 117 yD~~t~~W-~-~l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
||+.+.+. . .+.. ...++ ++.+.. ++ .|| .+.. .. -...+++||+.+.+......
T Consensus 67 ~d~~~~~~~~~~~~~---~~~~~--~~~~~s~dg~~l~-~~~~-~~--~~~~i~v~d~~~~~~~~~~~ 125 (331)
T 3u4y_A 67 IETQLEPPKVVAIQE---GQSSM--ADVDITPDDQFAV-TVTG-LN--HPFNMQSYSFLKNKFISTIP 125 (331)
T ss_dssp EECSSSSCEEEEEEE---CSSCC--CCEEECTTSSEEE-ECCC-SS--SSCEEEEEETTTTEEEEEEE
T ss_pred EECCCCceeEEeccc---CCCCc--cceEECCCCCEEE-EecC-CC--CcccEEEEECCCCCeEEEEE
Confidence 99988874 2 2222 11122 212222 33 455 3222 11 11269999999887655443
No 97
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=79.08 E-value=37 Score=30.70 Aligned_cols=170 Identities=9% Similarity=-0.028 Sum_probs=87.5
Q ss_pred cEEEEECCCCeEEecccCCCCC-CcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGP-EAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P-~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+++||+. .++..... | ....-+.++.. ++.+|+.... ...+++||+ +.+...+....
T Consensus 79 ~i~~~~~~-g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~d~-~g~~~~~~~~~--- 138 (299)
T 2z2n_A 79 KIGRITKK-GIIKEYTL----PNPDSAPYGITEGPNGDIWFTEMN-----------GNRIGRITD-DGKIREYELPN--- 138 (299)
T ss_dssp EEEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT-----------TTEEEEECT-TCCEEEEECSS---
T ss_pred eEEEECCC-CcEEEEeC----CCcCCCceeeEECCCCCEEEEecC-----------CceEEEECC-CCCEEEecCCC---
Confidence 36666665 34443321 1 11122334333 4678887542 136889998 66665543221
Q ss_pred CCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce-eEEEEE-CCEEEEEecccCCCC
Q 011998 84 SARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG-HSTVAF-GKNLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~-hs~~~~-~~~LyV~GG~~~~~~ 160 (473)
....-+.++.. ++.+|+... ..+.+++||+ +.+...... +..... ...+.. +++||+....
T Consensus 139 ~~~~~~~i~~~~~g~l~v~~~------~~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~----- 202 (299)
T 2z2n_A 139 KGSYPSFITLGSDNALWFTEN------QNNAIGRITE-SGDITEFKI----PTPASGPVGITKGNDDALWFVEII----- 202 (299)
T ss_dssp TTCCEEEEEECTTSCEEEEET------TTTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----
T ss_pred CCCCCceEEEcCCCCEEEEeC------CCCEEEEEcC-CCcEEEeeC----CCCCCcceeEEECCCCCEEEEccC-----
Confidence 11223344444 578888642 1356899999 777776542 111112 223332 3568776432
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 225 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~ 225 (473)
.+.+++||+ ++.+..+... .......+..++ .++.||+.... -+.+++|+.
T Consensus 203 -~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~~--~~g~l~v~~~~------~~~i~~~d~ 253 (299)
T 2z2n_A 203 -GNKIGRITT-SGEITEFKIP----TPNARPHAITAG--AGIDLWFTEWG------ANKIGRLTS 253 (299)
T ss_dssp -TTEEEEECT-TCCEEEEECS----STTCCEEEEEEC--STTCEEEEETT------TTEEEEEET
T ss_pred -CceEEEECC-CCcEEEEECC----CCCCCceeEEEC--CCCCEEEeccC------CceEEEECC
Confidence 245899999 7777665432 111122334443 35667776321 234777776
No 98
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=78.82 E-value=48 Score=31.92 Aligned_cols=110 Identities=12% Similarity=0.106 Sum_probs=57.2
Q ss_pred EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEE
Q 011998 41 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 41 ~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
.+++.|+.+ ..+.+||+.+.+....-... .... .-.+..+ ++.+++.|+.+ ..+.+||
T Consensus 145 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~~--~~~~-~v~~~~~~~~~~~l~~~~~d------~~i~iwd 204 (402)
T 2aq5_A 145 NVLLSAGCD-----------NVILVWDVGTGAAVLTLGPD--VHPD-TIYSVDWSRDGALICTSCRD------KRVRVIE 204 (402)
T ss_dssp TEEEEEETT-----------SCEEEEETTTTEEEEEECTT--TCCS-CEEEEEECTTSSCEEEEETT------SEEEEEE
T ss_pred CEEEEEcCC-----------CEEEEEECCCCCccEEEecC--CCCC-ceEEEEECCCCCEEEEEecC------CcEEEEe
Confidence 577777742 35889999988665432100 0111 1222333 56777777754 4588999
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
+.+.+-...-..+ ....+....+..-++++++.|... .....+.+||+.+..
T Consensus 205 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~g~~~---~~d~~i~iwd~~~~~ 256 (402)
T 2aq5_A 205 PRKGTVVAEKDRP-HEGTRPVHAVFVSEGKILTTGFSR---MSERQVALWDTKHLE 256 (402)
T ss_dssp TTTTEEEEEEECS-SCSSSCCEEEECSTTEEEEEEECT---TCCEEEEEEETTBCS
T ss_pred CCCCceeeeeccC-CCCCcceEEEEcCCCcEEEEeccC---CCCceEEEEcCcccc
Confidence 9887643322000 111111222222356666666210 112458899987653
No 99
>3c5m_A Oligogalacturonate lyase; blade-shaped beta-propeller, structural genomics, PSI-2, protein structure initiative; 2.60A {Vibrio parahaemolyticus rimd 2210633}
Probab=78.71 E-value=32 Score=32.68 Aligned_cols=110 Identities=9% Similarity=0.053 Sum_probs=58.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCE-EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~-IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..++++|+.+.+...+... .....+....- ++. |++... .........+|++|..+..+..+.. ..+..
T Consensus 168 ~~l~~~d~~~g~~~~~~~~----~~~~~~~~~sp~dg~~l~~~~~-~~~~~~~~~l~~~d~~~~~~~~l~~----~~~~~ 238 (396)
T 3c5m_A 168 CRLIKVDIETGELEVIHQD----TAWLGHPIYRPFDDSTVGFCHE-GPHDLVDARMWLVNEDGSNVRKIKE----HAEGE 238 (396)
T ss_dssp EEEEEEETTTCCEEEEEEE----SSCEEEEEEETTEEEEEEEEEC-SCSSSCSCCCEEEETTSCCCEESSC----CCTTE
T ss_pred ceEEEEECCCCcEEeeccC----CcccccceECCCCCCEEEEEec-CCCCCCCceEEEEECCCCceeEeec----cCCCc
Confidence 4799999999887766532 11222322332 344 444432 2222223679999998888776653 11111
Q ss_pred eeE-EEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 139 GHS-TVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 139 ~hs-~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
... .... +++.+++..... +.....++++|+.+++...+..
T Consensus 239 ~~~~~~~spdg~~l~~~~~~~-~~~~~~l~~~d~~~g~~~~l~~ 281 (396)
T 3c5m_A 239 SCTHEFWIPDGSAMAYVSYFK-GQTDRVIYKANPETLENEEVMV 281 (396)
T ss_dssp EEEEEEECTTSSCEEEEEEET-TTCCEEEEEECTTTCCEEEEEE
T ss_pred cccceEECCCCCEEEEEecCC-CCccceEEEEECCCCCeEEeee
Confidence 111 2222 455334443321 1122349999999988777764
No 100
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=78.63 E-value=46 Score=31.62 Aligned_cols=177 Identities=6% Similarity=-0.041 Sum_probs=88.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEEC--CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVG--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.+.+||..+.+....... . .....-.+++... +.+++.|+.+ ..+.+||+.+.....+.....
T Consensus 97 ~i~iwd~~~~~~~~~~~~-~-~h~~~v~~~~~~~~~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~~~-- 161 (383)
T 3ei3_B 97 DIILWDYDVQNKTSFIQG-M-GPGDAITGMKFNQFNTNQLFVSSIR-----------GATTLRDFSGSVIQVFAKTDS-- 161 (383)
T ss_dssp CEEEEETTSTTCEEEECC-C-STTCBEEEEEEETTEEEEEEEEETT-----------TEEEEEETTSCEEEEEECCCC--
T ss_pred eEEEEeCCCcccceeeec-C-CcCCceeEEEeCCCCCCEEEEEeCC-----------CEEEEEECCCCceEEEeccCC--
Confidence 577788777665543210 0 1111122333333 4677777642 368889998877666643211
Q ss_pred CCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCE-EEEEecccCCCC
Q 011998 84 SARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~-LyV~GG~~~~~~ 160 (473)
....-.+++.. ++.+++.|+.+ ..+.+||+....-..+.. ....-.+++.. ++. +++.|+.+
T Consensus 162 ~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~-----h~~~v~~~~~~~~~~~~l~s~~~d---- 226 (383)
T 3ei3_B 162 WDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKL-----HKAKVTHAEFNPRCDWLMATSSVD---- 226 (383)
T ss_dssp SSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEEC-----SSSCEEEEEECSSCTTEEEEEETT----
T ss_pred CCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEecc-----CCCcEEEEEECCCCCCEEEEEeCC----
Confidence 01111222222 56677777754 468889985544433331 11111222222 233 77777652
Q ss_pred ccccEEEEeCCC----CcEEEEeeCCCCCCCcceeeEEEecccc-CCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 161 LYDDLYMIDVDS----GLWTKVITTGEGPSARFSVAGDCLDPLK-GGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 161 ~~ndv~~yd~~t----~~W~~v~~~g~~P~~R~~~~a~~~~~~~-~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
..+.+||+.+ ......... .....++.+. . ++.+++.|+.+. .+.++|....
T Consensus 227 --~~i~iwd~~~~~~~~~~~~~~~~------~~~v~~~~~s--~~~~~~l~~~~~d~------~i~iwd~~~~ 283 (383)
T 3ei3_B 227 --ATVKLWDLRNIKDKNSYIAEMPH------EKPVNAAYFN--PTDSTKLLTTDQRN------EIRVYSSYDW 283 (383)
T ss_dssp --SEEEEEEGGGCCSTTCEEEEEEC------SSCEEEEEEC--TTTSCEEEEEESSS------EEEEEETTBT
T ss_pred --CEEEEEeCCCCCcccceEEEecC------CCceEEEEEc--CCCCCEEEEEcCCC------cEEEEECCCC
Confidence 3488888876 333322211 1112223332 3 566677776543 4677776553
No 101
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=78.34 E-value=42 Score=30.94 Aligned_cols=91 Identities=9% Similarity=0.068 Sum_probs=48.0
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
.+.+||..+.+....... .. ..-.++.+ ++.+++.|+.++ .+.+||+.+.+-..... ....-
T Consensus 196 ~i~i~d~~~~~~~~~~~~---h~--~~v~~~~~s~~~~~l~s~s~Dg------~i~iwd~~~~~~~~~~~-----~~~~v 259 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHIG---HT--GYLNTVTVSPDGSLCASGGKDG------QAMLWDLNEGKHLYTLD-----GGDII 259 (340)
T ss_dssp CEEEEETTTTEEEEEECC---CS--SCEEEEEECTTSSEEEEEETTC------EEEEEETTTTEEEEEEE-----CSSCE
T ss_pred EEEEEECCCCceeeEecC---CC--CcEEEEEECCCCCEEEEEeCCC------eEEEEEeccCceeeeec-----CCceE
Confidence 478889988765433221 11 11122223 567788887653 47788887665332221 11122
Q ss_pred eEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 140 HSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
.+++...+..++.++.+ ..+.+||+++..
T Consensus 260 ~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~ 288 (340)
T 4aow_A 260 NALCFSPNRYWLCAATG------PSIKIWDLEGKI 288 (340)
T ss_dssp EEEEECSSSSEEEEEET------TEEEEEETTTTE
T ss_pred EeeecCCCCceeeccCC------CEEEEEECCCCe
Confidence 23333344455566642 347888887764
No 102
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=78.03 E-value=24 Score=36.62 Aligned_cols=150 Identities=13% Similarity=0.084 Sum_probs=73.0
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCE-EEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNK-IIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~-IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..++++|..+.+-..+... +..+.-|..+.. +++ +|+.+. ..+.+.++|+.+.+-...-..+..|.+-.
T Consensus 302 g~i~vvd~~~~~~l~~~~i---~~~~~~~~~~~spdg~~l~va~~------~~~~v~v~D~~tg~l~~~i~~g~~ph~g~ 372 (543)
T 1nir_A 302 GKVLLVNYKDIDNLTVTSI---GAAPFLHDGGWDSSHRYFMTAAN------NSNKVAVIDSKDRRLSALVDVGKTPHPGR 372 (543)
T ss_dssp TEEEEEECTTSSSCEEEEE---ECCSSCCCEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSBCCTT
T ss_pred CeEEEEEecCCCcceeEEe---ccCcCccCceECCCCCEEEEEec------CCCeEEEEECCCCeEEEeeccCCCCCCCC
Confidence 5789999876432111111 112233333333 444 555432 24678889999987655433333444322
Q ss_pred eeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC-----cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccC
Q 011998 139 GHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG-----LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 139 ~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~-----~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
+... .. ++.+|+.+...+ +.|-++|..+. .|+.+........... .+... -.+..||+-.-.+
T Consensus 373 g~~~-~~p~~g~~~~s~~~~d-----~~V~v~d~~~~~~~~~~~~~v~~l~~~g~~~~---~v~~~-pdg~~l~v~~~~~ 442 (543)
T 1nir_A 373 GANF-VHPKYGPVWSTSHLGD-----GSISLIGTDPKNHPQYAWKKVAELQGQGGGSL---FIKTH-PKSSHLYVDTTFN 442 (543)
T ss_dssp CEEE-EETTTEEEEEEEBSSS-----SEEEEEECCTTTCTTTBTSEEEEEECSCSCCC---CEECC-TTCCEEEECCTTC
T ss_pred Cccc-CCCCCccEEEeccCCC-----ceEEEEEeCCCCCchhcCeEEEEEEcCCCCce---EEEcC-CCCCcEEEecCCC
Confidence 2222 23 256887765422 34778887762 2766654311111111 11111 1244555532112
Q ss_pred CCCCccCcEEEEEccccc
Q 011998 212 KSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 212 ~~~~~~~dv~~ld~~~~~ 229 (473)
.+...-+.+.+||..+.+
T Consensus 443 ~~~~~~~~v~v~d~~~~~ 460 (543)
T 1nir_A 443 PDARISQSVAVFDLKNLD 460 (543)
T ss_dssp SSHHHHTCEEEEETTCTT
T ss_pred CCcccCceEEEEECCCCC
Confidence 211235679999988765
No 103
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=77.97 E-value=25 Score=37.49 Aligned_cols=196 Identities=11% Similarity=0.072 Sum_probs=98.4
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCC--CCCCceeeCeEEEEECCCCeE--EEeecCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSS--NTNDEVYYNDLYILNTETFVW--KRATTSG 80 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~--~~~~~~~~~dv~~yd~~t~~W--~~l~~~g 80 (473)
..|+++|..+++..... ..+..+....+-.-+++.++++...... .........++|++++.+..- ..+...
T Consensus 147 ~~i~v~dl~tg~~~~~~---~~~~~~~~~~~wspDg~~l~~~~~d~~~~~~~~~~~~~~~v~~~~l~t~~~~~~lv~~~- 222 (695)
T 2bkl_A 147 AVLHVIDVDSGEWSKVD---VIEGGKYATPKWTPDSKGFYYEWLPTDPSIKVDERPGYTTIRYHTLGTEPSKDTVVHER- 222 (695)
T ss_dssp CEEEEEETTTCCBCSSC---CBSCCTTCCCEECTTSSEEEEEECCCCTTSCGGGGGGGCEEEEEETTSCGGGCEEEECC-
T ss_pred EEEEEEECCCCCCcCCc---ccCcccccceEEecCCCEEEEEEecCCCCCccccCCCCCEEEEEECCCCchhceEEEec-
Confidence 46888898888764111 1122222222222356666666542210 000112346799999987752 233221
Q ss_pred CCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC
Q 011998 81 NPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ 159 (473)
Q Consensus 81 ~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~ 159 (473)
...+....+... -+++.++++..+.. ..+++|++|..+..|+.+... .... ...+..++.+|+.... .
T Consensus 223 -~~~~~~~~~~~~SpDG~~l~~~~~~~~--~~~~l~~~~~~~~~~~~l~~~----~~~~-~~~~~~~g~l~~~s~~---~ 291 (695)
T 2bkl_A 223 -TGDPTTFLQSDLSRDGKYLFVYILRGW--SENDVYWKRPGEKDFRLLVKG----VGAK-YEVHAWKDRFYVLTDE---G 291 (695)
T ss_dssp -CCCTTCEEEEEECTTSCCEEEEEEETT--TEEEEEEECTTCSSCEEEEEC----SSCC-EEEEEETTEEEEEECT---T
T ss_pred -CCCCEEEEEEEECCCCCEEEEEEeCCC--CceEEEEEcCCCCceEEeecC----CCce-EEEEecCCcEEEEECC---C
Confidence 111222223222 25555555443321 356899998878889888641 1111 2222356665555332 1
Q ss_pred CccccEEEEeCCCCc---EEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 160 NLYDDLYMIDVDSGL---WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 160 ~~~ndv~~yd~~t~~---W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
.....++.+|+.+.. |+.+.... + ......+.+ .+++|++....+. ...+|.++..
T Consensus 292 ~~~~~l~~~d~~~~~~~~~~~l~~~~--~--~~~l~~~~~---~~~~lv~~~~~dg----~~~l~~~~~~ 350 (695)
T 2bkl_A 292 APRQRVFEVDPAKPARASWKEIVPED--S--SASLLSVSI---VGGHLSLEYLKDA----TSEVRVATLK 350 (695)
T ss_dssp CTTCEEEEEBTTBCSGGGCEEEECCC--S--SCEEEEEEE---ETTEEEEEEEETT----EEEEEEEETT
T ss_pred CCCCEEEEEeCCCCCccCCeEEecCC--C--CCeEEEEEE---ECCEEEEEEEECC----EEEEEEEeCC
Confidence 234579999987765 88876521 1 111222222 2677777654433 3457777753
No 104
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=77.74 E-value=55 Score=32.01 Aligned_cols=146 Identities=12% Similarity=0.093 Sum_probs=72.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
++..++.|+.+ ..+.+||+.+.+-...-. .....-.+..+++..++.|+.++ .+.+||
T Consensus 248 ~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d~------~i~i~d 305 (445)
T 2ovr_B 248 DGRRVVSGAYD-----------FMVKVWDPETETCLHTLQ-----GHTNRVYSLQFDGIHVVSGSLDT------SIRVWD 305 (445)
T ss_dssp CSSCEEEEETT-----------SCEEEEEGGGTEEEEEEC-----CCSSCEEEEEECSSEEEEEETTS------CEEEEE
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEeEEec-----CCCCceEEEEECCCEEEEEeCCC------eEEEEE
Confidence 55556666631 357778877664322211 11112233344777777777543 478899
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEecc
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDP 198 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~ 198 (473)
..+.+-...-. .......+....+.+++.|+.+ ..+.+||+.+.+-...-.. .........+...
T Consensus 306 ~~~~~~~~~~~-----~~~~~v~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~-- 370 (445)
T 2ovr_B 306 VETGNCIHTLT-----GHQSLTSGMELKDNILVSGNAD------STVKIWDIKTGQCLQTLQG--PNKHQSAVTCLQF-- 370 (445)
T ss_dssp TTTCCEEEEEC-----CCCSCEEEEEEETTEEEEEETT------SCEEEEETTTCCEEEEECS--TTSCSSCEEEEEE--
T ss_pred CCCCCEEEEEc-----CCcccEEEEEEeCCEEEEEeCC------CeEEEEECCCCcEEEEEcc--CCCCCCCEEEEEE--
Confidence 88776433221 1111222333445566666652 3488999887653322211 0001111222333
Q ss_pred ccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 199 LKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 199 ~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
++.+++.|+.++ .+.+++....+
T Consensus 371 --~~~~l~s~~~dg------~v~iwd~~~~~ 393 (445)
T 2ovr_B 371 --NKNFVITSSDDG------TVKLWDLKTGE 393 (445)
T ss_dssp --CSSEEEEEETTS------EEEEEETTTCC
T ss_pred --CCCEEEEEeCCC------eEEEEECCCCc
Confidence 355667776554 36677766543
No 105
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=77.70 E-value=39 Score=30.23 Aligned_cols=144 Identities=13% Similarity=0.056 Sum_probs=74.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++.+|+... . ..+++||+.+.....+...+ ...-+.++.. +++||+.... ...+++|
T Consensus 77 ~g~l~v~~~-~-----------~~i~~~d~~~~~~~~~~~~~----~~~p~~i~~~~~g~l~v~~~~------~~~i~~~ 134 (270)
T 1rwi_B 77 AGTVYVTDF-N-----------NRVVTLAAGSNNQTVLPFDG----LNYPEGLAVDTQGAVYVADRG------NNRVVKL 134 (270)
T ss_dssp TCCEEEEET-T-----------TEEEEECTTCSCCEECCCCS----CSSEEEEEECTTCCEEEEEGG------GTEEEEE
T ss_pred CCCEEEEcC-C-----------CEEEEEeCCCceEeeeecCC----cCCCcceEECCCCCEEEEECC------CCEEEEE
Confidence 467887754 1 35889998876554442211 1122344443 5778886532 3568888
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
+..+......... ....+ ...+.. +++||+.... .+.+++||+....-......+ . ....+.++
T Consensus 135 ~~~~~~~~~~~~~-~~~~p---~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~~-~----~~p~~i~~ 199 (270)
T 1rwi_B 135 AAGSKTQTVLPFT-GLNDP---DGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFTD-I----TAPWGIAV 199 (270)
T ss_dssp CTTCCSCEECCCC-SCCSC---CCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCSS-C----CSEEEEEE
T ss_pred ECCCceeEeeccc-cCCCc---eeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeecccC-C----CCceEEEE
Confidence 8766655433221 11111 223333 4678876543 245899998876543322111 1 12233444
Q ss_pred ccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 197 DPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
+ .++.||+....+ +.+++|+...
T Consensus 200 d--~~g~l~v~~~~~------~~v~~~~~~~ 222 (270)
T 1rwi_B 200 D--EAGTVYVTEHNT------NQVVKLLAGS 222 (270)
T ss_dssp C--TTCCEEEEETTT------SCEEEECTTC
T ss_pred C--CCCCEEEEECCC------CcEEEEcCCC
Confidence 3 345777764322 2367777644
No 106
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=77.20 E-value=45 Score=32.28 Aligned_cols=105 Identities=13% Similarity=0.121 Sum_probs=57.9
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+++.++.|+.+ ..+.+||+.+.+-...-.. ....-.+++.. ++..++.|+.+ ..+.+|
T Consensus 134 dg~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~----h~~~v~~~~~~p~~~~l~s~s~d------~~v~iw 192 (393)
T 1erj_A 134 DGKFLATGAED-----------RLIRIWDIENRKIVMILQG----HEQDIYSLDYFPSGDKLVSGSGD------RTVRIW 192 (393)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEECC----CSSCEEEEEECTTSSEEEEEETT------SEEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEcc----CCCCEEEEEEcCCCCEEEEecCC------CcEEEE
Confidence 46677777742 3588899988765433221 11111222222 55666777654 457888
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
|+.+.+....-. ....-.+++.. ++++++.|+.+ ..+.+||+.+..-
T Consensus 193 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~l~~~s~d------~~v~iwd~~~~~~ 241 (393)
T 1erj_A 193 DLRTGQCSLTLS-----IEDGVTTVAVSPGDGKYIAAGSLD------RAVRVWDSETGFL 241 (393)
T ss_dssp ETTTTEEEEEEE-----CSSCEEEEEECSTTCCEEEEEETT------SCEEEEETTTCCE
T ss_pred ECCCCeeEEEEE-----cCCCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCCcE
Confidence 988876543321 11112222332 45677777763 2488889887654
No 107
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=77.18 E-value=79 Score=33.53 Aligned_cols=176 Identities=9% Similarity=-0.018 Sum_probs=84.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC-eEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~~~g~~ 82 (473)
..+.+||..+.+....-. . ... .-.+++.. ++..++.|+.+ ..+.+||..+. ........
T Consensus 77 g~i~vw~~~~~~~~~~~~--~-~~~-~v~~~~~s~~~~~l~~~~~d-----------g~i~vw~~~~~~~~~~~~~~--- 138 (814)
T 3mkq_A 77 FRIRVFNYNTGEKVVDFE--A-HPD-YIRSIAVHPTKPYVLSGSDD-----------LTVKLWNWENNWALEQTFEG--- 138 (814)
T ss_dssp SEEEEEETTTCCEEEEEE--C-CSS-CEEEEEECSSSSEEEEEETT-----------SEEEEEEGGGTSEEEEEEEC---
T ss_pred CeEEEEECCCCcEEEEEe--c-CCC-CEEEEEEeCCCCEEEEEcCC-----------CEEEEEECCCCceEEEEEcC---
Confidence 357788887776553321 1 111 11122222 35555666631 35788898776 33332221
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE---CCEEEEEecccC
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTD 157 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~---~~~LyV~GG~~~ 157 (473)
. ...-.+++.. ++.+++.|+.+ ..+.+||..+..-..... ......-..++.. ++.+++.|+..
T Consensus 139 ~-~~~v~~~~~~p~~~~~l~~~~~d------g~v~vwd~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~~~l~~~~~d- 207 (814)
T 3mkq_A 139 H-EHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLT---TGQERGVNYVDYYPLPDKPYMITASDD- 207 (814)
T ss_dssp C-SSCEEEEEEETTEEEEEEEEETT------SEEEEEETTCSSCSEEEE---CCCTTCCCEEEECCSTTCCEEEEECTT-
T ss_pred C-CCcEEEEEEEcCCCCEEEEEeCC------CeEEEEECCCCcceeEEe---cCCCCCEEEEEEEECCCCCEEEEEeCC-
Confidence 0 1111222222 45677777754 357888876554222211 1111222233332 45677777652
Q ss_pred CCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 158 SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 158 ~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
..+.+||+.+..-...-.. .... ..+..+. .++.+++.|+.++. +.+++...
T Consensus 208 -----g~i~~~d~~~~~~~~~~~~---~~~~--v~~~~~~--~~~~~l~~~~~dg~------v~vwd~~~ 259 (814)
T 3mkq_A 208 -----LTIKIWDYQTKSCVATLEG---HMSN--VSFAVFH--PTLPIIISGSEDGT------LKIWNSST 259 (814)
T ss_dssp -----SEEEEEETTTTEEEEEEEC---CSSC--EEEEEEC--SSSSEEEEEETTSC------EEEEETTT
T ss_pred -----CEEEEEECCCCcEEEEEcC---CCCC--EEEEEEc--CCCCEEEEEeCCCe------EEEEECCC
Confidence 2488999887653222211 1111 1222222 35567777775543 56666654
No 108
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=76.53 E-value=14 Score=36.49 Aligned_cols=104 Identities=12% Similarity=0.090 Sum_probs=53.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++.+++.|+.+ ..+.+||+.+.....+....... ....++.. -++.+++.|+.++ .+.+|
T Consensus 176 ~~~~l~s~s~D-----------~~v~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~g~~dg------~i~~w 236 (435)
T 4e54_B 176 NTNQFYASSME-----------GTTRLQDFKGNILRVFASSDTIN--IWFCSLDVSASSRMVVTGDNVG------NVILL 236 (435)
T ss_dssp CTTEEEEECSS-----------SCEEEEETTSCEEEEEECCSSCS--CCCCCEEEETTTTEEEEECSSS------BEEEE
T ss_pred CCCEEEEEeCC-----------CEEEEeeccCCceeEEeccCCCC--ccEEEEEECCCCCEEEEEeCCC------cEeee
Confidence 45566677742 34778899888766554332111 11122222 2677888887543 47788
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE--C-CEEEEEecccCCCCccccEEEEeCCCC
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF--G-KNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~--~-~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
|+....-..+ ......-.++.+ . ..+++.|+.+ ..+.+||+.+.
T Consensus 237 d~~~~~~~~~------~~h~~~v~~v~~~p~~~~~~~s~s~d------~~v~iwd~~~~ 283 (435)
T 4e54_B 237 NMDGKELWNL------RMHKKKVTHVALNPCCDWFLATASVD------QTVKIWDLRQV 283 (435)
T ss_dssp ESSSCBCCCS------BCCSSCEEEEEECTTCSSEEEEEETT------SBCCEEETTTC
T ss_pred ccCcceeEEE------ecccceEEeeeecCCCceEEEEecCc------ceeeEEecccc
Confidence 8765432111 111111122333 2 3466677652 23667887664
No 109
>1q7f_A NHL, brain tumor CG10719-PA; BRAT, NHL domain, NHL repeat, beta-propeller, translation; 1.95A {Drosophila melanogaster} SCOP: b.68.9.1
Probab=76.23 E-value=45 Score=30.26 Aligned_cols=136 Identities=12% Similarity=0.127 Sum_probs=70.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++++|+.... ...+++||+.......+...+.. ..-..++.. ++.||+... ..+.+++|
T Consensus 131 ~g~l~v~~~~-----------~~~i~~~~~~g~~~~~~~~~~~~---~~p~~i~~~~~g~l~v~~~------~~~~i~~~ 190 (286)
T 1q7f_A 131 KGRIIVVECK-----------VMRVIIFDQNGNVLHKFGCSKHL---EFPNGVVVNDKQEIFISDN------RAHCVKVF 190 (286)
T ss_dssp TSCEEEEETT-----------TTEEEEECTTSCEEEEEECTTTC---SSEEEEEECSSSEEEEEEG------GGTEEEEE
T ss_pred CCCEEEEECC-----------CCEEEEEcCCCCEEEEeCCCCcc---CCcEEEEECCCCCEEEEEC------CCCEEEEE
Confidence 4678887652 24688999876655444322111 112233333 578888654 24678999
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|+.......+...+.+..| ..++.. +++||+...... ..+.+||.....-..+..... ... ..++.+
T Consensus 191 ~~~g~~~~~~~~~g~~~~p---~~i~~d~~G~l~v~~~~~~-----~~i~~~~~~g~~~~~~~~~~~--~~~--~~~i~~ 258 (286)
T 1q7f_A 191 NYEGQYLRQIGGEGITNYP---IGVGINSNGEILIADNHNN-----FNLTIFTQDGQLISALESKVK--HAQ--CFDVAL 258 (286)
T ss_dssp ETTCCEEEEESCTTTSCSE---EEEEECTTCCEEEEECSSS-----CEEEEECTTSCEEEEEEESSC--CSC--EEEEEE
T ss_pred cCCCCEEEEEccCCccCCC---cEEEECCCCCEEEEeCCCC-----EEEEEECCCCCEEEEEcccCC--CCc--ceeEEE
Confidence 9876554444432211111 223332 467888764311 158999976554444443211 111 122333
Q ss_pred ccccCCEEEEEc
Q 011998 197 DPLKGGVLVFIG 208 (473)
Q Consensus 197 ~~~~~~~l~v~G 208 (473)
+ .+++||+..
T Consensus 259 ~--~~g~l~vs~ 268 (286)
T 1q7f_A 259 M--DDGSVVLAS 268 (286)
T ss_dssp E--TTTEEEEEE
T ss_pred C--CCCcEEEEC
Confidence 2 367888873
No 110
>2ecf_A Dipeptidyl peptidase IV; prolyl oligopeptidase family, peptidase family S9, hydrolase; 2.80A {Stenotrophomonas maltophilia}
Probab=75.07 E-value=37 Score=35.89 Aligned_cols=58 Identities=12% Similarity=0.134 Sum_probs=33.3
Q ss_pred CeEEEEECCCC---eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 61 NDLYILNTETF---VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 61 ~dv~~yd~~t~---~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
..++++|..+. .-..+... ..........-+++.++++.. +.++++|+.+.+...+..
T Consensus 129 ~~i~~~d~~~~~~~~~~~l~~~----~~~~~~~~~SPDG~~la~~~~-------~~i~~~d~~~g~~~~~~~ 189 (741)
T 2ecf_A 129 GELYLYDLKQEGKAAVRQLTHG----EGFATDAKLSPKGGFVSFIRG-------RNLWVIDLASGRQMQLTA 189 (741)
T ss_dssp TEEEEEESSSCSTTSCCBCCCS----SSCEEEEEECTTSSEEEEEET-------TEEEEEETTTTEEEECCC
T ss_pred CcEEEEECCCCCcceEEEcccC----CcccccccCCCCCCEEEEEeC-------CcEEEEecCCCCEEEecc
Confidence 57999999887 44333221 111111112225665555532 379999999988776654
No 111
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=74.94 E-value=62 Score=31.20 Aligned_cols=134 Identities=14% Similarity=0.186 Sum_probs=72.7
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..+++||..+.......... . ...-.++.+ ++.+++.|+.++ .+.+||..+.+....-. ....
T Consensus 113 ~~v~lw~~~~~~~~~~~~~~---~-~~~v~~v~~s~~~~~l~~~~~dg------~i~iwd~~~~~~~~~~~-----~~~~ 177 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAETD---E-STYVASVKWSHDGSFLSVGLGNG------LVDIYDVESQTKLRTMA-----GHQA 177 (401)
T ss_dssp TEEEEEETTTCCEEEEEECC---T-TCCEEEEEECTTSSEEEEEETTS------CEEEEETTTCCEEEEEC-----CCSS
T ss_pred CeEEEeeCCCCcEeEeeecC---C-CCCEEEEEECCCCCEEEEECCCC------eEEEEECcCCeEEEEec-----CCCC
Confidence 46999999998876654431 1 112233333 567777777543 57889988876543321 1222
Q ss_pred eeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccC
Q 011998 139 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALD 218 (473)
Q Consensus 139 ~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~ 218 (473)
.-.++.+++.+++.|+.. ..+..||+....-......+ . .....+..+. .++.+++.|+.+.
T Consensus 178 ~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~--~--~~~v~~~~~~--~~~~~l~s~~~d~------ 239 (401)
T 4aez_A 178 RVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTLQG--H--SSEVCGLAWR--SDGLQLASGGNDN------ 239 (401)
T ss_dssp CEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEEEC--C--SSCEEEEEEC--TTSSEEEEEETTS------
T ss_pred ceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEEcC--C--CCCeeEEEEc--CCCCEEEEEeCCC------
Confidence 223334456677777752 35888998743322211111 0 1112222232 3566777777654
Q ss_pred cEEEEEccc
Q 011998 219 DMYYLYTGL 227 (473)
Q Consensus 219 dv~~ld~~~ 227 (473)
.+.++|...
T Consensus 240 ~v~iwd~~~ 248 (401)
T 4aez_A 240 VVQIWDARS 248 (401)
T ss_dssp CEEEEETTC
T ss_pred eEEEccCCC
Confidence 367777665
No 112
>1rwi_B Serine/threonine-protein kinase PKND; beta propeller, structural genomics, PSI, protein structure initiative; 1.80A {Mycobacterium tuberculosis} SCOP: b.68.9.1 PDB: 1rwl_A
Probab=74.93 E-value=46 Score=29.71 Aligned_cols=174 Identities=11% Similarity=-0.006 Sum_probs=84.0
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+++||+.+........ .....-+.++.. ++++|+.... ...+++|+..+.........+ .
T Consensus 88 ~i~~~d~~~~~~~~~~~----~~~~~p~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~~~~~~~~~~~~-~-- 149 (270)
T 1rwi_B 88 RVVTLAAGSNNQTVLPF----DGLNYPEGLAVDTQGAVYVADRG-----------NNRVVKLAAGSKTQTVLPFTG-L-- 149 (270)
T ss_dssp EEEEECTTCSCCEECCC----CSCSSEEEEEECTTCCEEEEEGG-----------GTEEEEECTTCCSCEECCCCS-C--
T ss_pred EEEEEeCCCceEeeeec----CCcCCCcceEECCCCCEEEEECC-----------CCEEEEEECCCceeEeecccc-C--
Confidence 46666666554333311 111122333333 4678887542 246888877665543332111 1
Q ss_pred CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ 162 (473)
..-..++.. +++||+.... .+.+++||+.+..-...... .+ ..-...+.. +++||+.... .
T Consensus 150 -~~p~~i~~~~~g~l~v~~~~------~~~i~~~~~~~~~~~~~~~~-~~---~~p~~i~~d~~g~l~v~~~~------~ 212 (270)
T 1rwi_B 150 -NDPDGVAVDNSGNVYVTDTD------NNRVVKLEAESNNQVVLPFT-DI---TAPWGIAVDEAGTVYVTEHN------T 212 (270)
T ss_dssp -CSCCCEEECTTCCEEEEEGG------GTEEEEECTTTCCEEECCCS-SC---CSEEEEEECTTCCEEEEETT------T
T ss_pred -CCceeEEEeCCCCEEEEECC------CCEEEEEecCCCceEeeccc-CC---CCceEEEECCCCCEEEEECC------C
Confidence 111233333 5778886532 35789999887764433211 11 112233333 3468876542 2
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
+.+++||+....-...... ......++.++ .++.||+....+. .+.+|+...
T Consensus 213 ~~v~~~~~~~~~~~~~~~~-----~~~~p~~i~~~--~~g~l~v~~~~~~------~v~~~~~~~ 264 (270)
T 1rwi_B 213 NQVVKLLAGSTTSTVLPFT-----GLNTPLAVAVD--SDRTVYVADRGND------RVVKLTSLE 264 (270)
T ss_dssp SCEEEECTTCSCCEECCCC-----SCSCEEEEEEC--TTCCEEEEEGGGT------EEEEECCCG
T ss_pred CcEEEEcCCCCcceeeccC-----CCCCceeEEEC--CCCCEEEEECCCC------EEEEEcCCC
Confidence 3589999876543322111 11122334443 3456777754332 355555443
No 113
>1yiq_A Quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM; 2.20A {Pseudomonas putida}
Probab=74.54 E-value=96 Score=33.17 Aligned_cols=110 Identities=15% Similarity=0.123 Sum_probs=60.4
Q ss_pred CcEEEEECCCC--eEEecccCCCCC--C---cccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGP--E---AREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P--~---~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
+.|+.+|..|. .|+.-....... . .....+.++.+++||+... ...++.+|..|. .|+.
T Consensus 80 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~~~------------dg~l~AlDa~TG~~~W~~ 147 (689)
T 1yiq_A 80 SVVYALDARDGRLIWKYDPQSDRHRAGEACCDAVNRGVAVWKGKVYVGVL------------DGRLEAIDAKTGQRAWSV 147 (689)
T ss_dssp GCEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT------------TSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCCceeEEEcCCCCccccccccccCCCCccEEECCEEEEEcc------------CCEEEEEECCCCCEeeee
Confidence 46899998876 588532110000 0 0112234567888888653 136899999877 4875
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEe
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 127 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l 127 (473)
-.............+.++.++.+|+-.+... ...-..++.||..|.+ |+.-
T Consensus 148 ~~~~~~~~~~~~~~sP~v~~g~v~vg~~~~~-~~~~g~v~a~D~~tG~~~W~~~ 200 (689)
T 1yiq_A 148 DTRADHKRSYTITGAPRVVNGKVVIGNGGAE-FGVRGYVTAYDAETGKEAWRFY 200 (689)
T ss_dssp ECCSCTTSCCBCCSCCEEETTEEEECCBCTT-TCCBCEEEEEETTTCCEEEEEE
T ss_pred cCcCCCCCCccccCCcEEECCEEEEEeCCCc-cCCCCEEEEEECCCCcEEEEec
Confidence 4320100111122233556888877432211 1134579999999876 8764
No 114
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=74.44 E-value=60 Score=30.93 Aligned_cols=151 Identities=12% Similarity=0.069 Sum_probs=73.5
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC-CceeeEEEEE--C-CEEEEEeCCCCCCCccceEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS-ARDSHTCSSW--K-NKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~-~R~~hs~~~~--~-~~IyV~GG~~~~~~~~ndv~ 115 (473)
+.+++.|+.+ ..+.+||+.+.+............ ......++.+ + ..+++.|+.++.. ..+.
T Consensus 178 ~~~l~~~~~d-----------g~v~iwd~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~d~~~---~~i~ 243 (416)
T 2pm9_A 178 AHVFASAGSS-----------NFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNSTRVATATGSDND---PSIL 243 (416)
T ss_dssp TTEEEEESSS-----------SCEEEEETTTTEEEEEECCCCCSSCCCCCEEEEEECSSCTTEEEEEECCSSS---CCCC
T ss_pred CcEEEEEcCC-----------CCEEEEECCCCCcceEEeccccccccCCceEEEEECCCCCCEEEEEECCCCC---ceEE
Confidence 4677777742 358999998876544322210000 0122233333 3 3577777765421 2567
Q ss_pred EEECCCCCEEEeeCCCCCC--CCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCccee
Q 011998 116 ILDTDTLTWKELNTSGMVL--SPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSV 191 (473)
Q Consensus 116 ~yD~~t~~W~~l~~~g~~p--~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~ 191 (473)
+||+.+..- .+.. +. ....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.. .. .. .
T Consensus 244 ~~d~~~~~~-~~~~---~~~~~~~~v~~~~~s~~~~~~l~s~~~d------g~v~~wd~~~~~~~~~~~~--~~-~~--v 308 (416)
T 2pm9_A 244 IWDLRNANT-PLQT---LNQGHQKGILSLDWCHQDEHLLLSSGRD------NTVLLWNPESAEQLSQFPA--RG-NW--C 308 (416)
T ss_dssp EEETTSTTS-CSBC---CCSCCSSCEEEEEECSSCSSCEEEEESS------SEEEEECSSSCCEEEEEEC--SS-SC--C
T ss_pred EEeCCCCCC-CcEE---eecCccCceeEEEeCCCCCCeEEEEeCC------CCEEEeeCCCCccceeecC--CC-Cc--e
Confidence 888876431 1111 11 11111222322 45677777752 3488999887654322211 01 11 1
Q ss_pred eEEEeccccCC-EEEEEcccCCCCCccCcEEEEEccc
Q 011998 192 AGDCLDPLKGG-VLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 192 ~a~~~~~~~~~-~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
.++.+. .++ .+++.|+.+.. +.++++..
T Consensus 309 ~~~~~s--~~~~~~l~s~~~d~~------i~iw~~~~ 337 (416)
T 2pm9_A 309 FKTKFA--PEAPDLFACASFDNK------IEVQTLQN 337 (416)
T ss_dssp CCEEEC--TTCTTEEEECCSSSE------EEEEESCC
T ss_pred EEEEEC--CCCCCEEEEEecCCc------EEEEEccC
Confidence 122221 234 67777776542 55666554
No 115
>3g4e_A Regucalcin; six bladed beta-propeller, gluconolcatonase, organophosphate hydrolase, calcium bound, alternative splicing, cytoplasm, phosphoprotein; 1.42A {Homo sapiens} PDB: 3g4h_B
Probab=74.25 E-value=55 Score=30.29 Aligned_cols=182 Identities=11% Similarity=-0.016 Sum_probs=83.3
Q ss_pred CcEEEEECCCCeEEecccCC-CCCCcccceEEEEECCEEEEEecCCCCCC-CCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRG-EGPEAREGHSAALVGKRLFIFGGCGKSSN-TNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~-~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~-~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+++||+.+.+++.+.... ..+..|....++.-++++|+.. ...... .........+|++|+.. +...+....
T Consensus 73 ~~l~~~d~~~g~~~~~~~~~~~~~~~~~~di~~d~dG~l~~~~-~~~~~~~~~~~~~~~~l~~~d~~g-~~~~~~~~~-- 148 (297)
T 3g4e_A 73 TKFCALNWKEQSAVVLATVDNDKKNNRFNDGKVDPAGRYFAGT-MAEETAPAVLERHQGALYSLFPDH-HVKKYFDQV-- 148 (297)
T ss_dssp TEEEEEETTTTEEEEEEECCTTCSSEEEEEEEECTTSCEEEEE-EECCSBTTBCCTTCEEEEEECTTS-CEEEEEEEE--
T ss_pred CeEEEEECCCCcEEEEEecCCCCCCCCCCCEEECCCCCEEEec-CCcccccccccCCCcEEEEEECCC-CEEEEeecc--
Confidence 45889999999887654221 1222233322222356777642 111000 00001124688898763 333332210
Q ss_pred CCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEEC--CCCCEEEeeCCCCCCCCcce-eEEEEE-CCEEEEEeccc
Q 011998 83 PSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLSPRAG-HSTVAF-GKNLFVFGGFT 156 (473)
Q Consensus 83 P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~--~t~~W~~l~~~g~~p~~R~~-hs~~~~-~~~LyV~GG~~ 156 (473)
. ....++.. +..+|+... ..+.+++||. .+............+..... ..++.- +++||+....
T Consensus 149 ~---~pngi~~spdg~~lyv~~~------~~~~i~~~~~d~~~G~~~~~~~~~~~~~~~~~p~g~~~d~~G~lwva~~~- 218 (297)
T 3g4e_A 149 D---ISNGLDWSLDHKIFYYIDS------LSYSVDAFDYDLQTGQISNRRSVYKLEKEEQIPDGMCIDAEGKLWVACYN- 218 (297)
T ss_dssp S---BEEEEEECTTSCEEEEEEG------GGTEEEEEEECTTTCCEEEEEEEEECCGGGCEEEEEEEBTTSCEEEEEET-
T ss_pred c---cccceEEcCCCCEEEEecC------CCCcEEEEeccCCCCcccCcEEEEECCCCCCCCCeeEECCCCCEEEEEcC-
Confidence 1 11233333 346888753 2466888875 55554321110011111111 223332 4678876432
Q ss_pred CCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEccc
Q 011998 157 DSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 210 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~ 210 (473)
.+.+++||+++.+....-. .|..+. .++++..-..+.|||....
T Consensus 219 -----~~~v~~~d~~tG~~~~~i~---~p~~~~--t~~~f~g~d~~~L~vt~~~ 262 (297)
T 3g4e_A 219 -----GGRVIRLDPVTGKRLQTVK---LPVDKT--TSCCFGGKNYSEMYVTCAR 262 (297)
T ss_dssp -----TTEEEEECTTTCCEEEEEE---CSSSBE--EEEEEESGGGCEEEEEEBC
T ss_pred -----CCEEEEEcCCCceEEEEEE---CCCCCc--eEEEEeCCCCCEEEEEcCC
Confidence 1349999998776543332 132222 2333311123577776543
No 116
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=74.18 E-value=57 Score=34.27 Aligned_cols=114 Identities=6% Similarity=-0.104 Sum_probs=55.6
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
.++++|+.+.+-..+.........+....+..-+++.++++..... .........++++|+.+.+-..+..... ...
T Consensus 38 ~i~~~d~~~g~~~~~~~~~~~~~~~v~~~~~SpDg~~l~~~~~~~~--~~~~~~~~~i~~~d~~~~~~~~l~~~~~-~~~ 114 (723)
T 1xfd_A 38 TVRLWNVETNTSTVLIEGKKIESLRAIRYEISPDREYALFSYNVEP--IYQHSYTGYYVLSKIPHGDPQSLDPPEV-SNA 114 (723)
T ss_dssp CEEEBCGGGCCCEEEECTTTTTTTTCSEEEECTTSSEEEEEESCCC--CSSSCCCSEEEEEESSSCCCEECCCTTC-CSC
T ss_pred CEEEEECCCCcEEEEeccccccccccceEEECCCCCEEEEEecCcc--ceeecceeeEEEEECCCCceEeccCCcc-ccc
Confidence 5777777776544432111110001122222235665566543211 1112234789999999887655543211 111
Q ss_pred ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 86 RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 86 R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
+..+....-+++.++++.. ..++++|..+.+...+..
T Consensus 115 ~~~~~~~SPdG~~la~~~~-------~~i~~~~~~~g~~~~~~~ 151 (723)
T 1xfd_A 115 KLQYAGWGPKGQQLIFIFE-------NNIYYCAHVGKQAIRVVS 151 (723)
T ss_dssp CCSBCCBCSSTTCEEEEET-------TEEEEESSSSSCCEEEEC
T ss_pred cccccEECCCCCEEEEEEC-------CeEEEEECCCCceEEEec
Confidence 1111122225555555442 479999998887776654
No 117
>2bkl_A Prolyl endopeptidase; mechanistic study, celiac sprue, hydrolase, protease; HET: ZAH MES; 1.5A {Myxococcus xanthus}
Probab=74.18 E-value=69 Score=33.93 Aligned_cols=104 Identities=15% Similarity=0.149 Sum_probs=59.3
Q ss_pred eCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC---EEEeeCCCCCCCC
Q 011998 60 YNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT---WKELNTSGMVLSP 136 (473)
Q Consensus 60 ~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~---W~~l~~~g~~p~~ 136 (473)
.+++|++|..+..|..+.... ... ...+..++.+|+....+. ....++++|+.+.. |+.+-+.. + .
T Consensus 251 ~~~l~~~~~~~~~~~~l~~~~----~~~-~~~~~~~g~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~~~~--~-~ 319 (695)
T 2bkl_A 251 ENDVYWKRPGEKDFRLLVKGV----GAK-YEVHAWKDRFYVLTDEGA---PRQRVFEVDPAKPARASWKEIVPED--S-S 319 (695)
T ss_dssp EEEEEEECTTCSSCEEEEECS----SCC-EEEEEETTEEEEEECTTC---TTCEEEEEBTTBCSGGGCEEEECCC--S-S
T ss_pred ceEEEEEcCCCCceEEeecCC----Cce-EEEEecCCcEEEEECCCC---CCCEEEEEeCCCCCccCCeEEecCC--C-C
Confidence 468999988777888876431 111 222224555666654332 24679999987765 88876411 1 1
Q ss_pred cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 137 RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 137 R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
..-......+++|++..... -...+|.+++....-+.+
T Consensus 320 ~~l~~~~~~~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l 357 (695)
T 2bkl_A 320 ASLLSVSIVGGHLSLEYLKD----ATSEVRVATLKGKPVRTV 357 (695)
T ss_dssp CEEEEEEEETTEEEEEEEET----TEEEEEEEETTCCEEEEC
T ss_pred CeEEEEEEECCEEEEEEEEC----CEEEEEEEeCCCCeeEEe
Confidence 12223344478877766542 234688888765433333
No 118
>1nir_A Nitrite reductase; hemoprotein, denitrification, domain swapping; HET: HEC DHE; 2.15A {Pseudomonas aeruginosa} SCOP: a.3.1.2 b.70.2.1 PDB: 1bl9_A* 1n15_A* 1n50_A* 1n90_A* 1gjq_A* 1nno_A* 1hzv_A* 1hzu_A*
Probab=73.94 E-value=86 Score=32.35 Aligned_cols=144 Identities=13% Similarity=0.097 Sum_probs=70.2
Q ss_pred CeEEEEECCCCeEEEeecC-CC-------CCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCC
Q 011998 61 NDLYILNTETFVWKRATTS-GN-------PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSG 131 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~-g~-------~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g 131 (473)
+.+.+||..+.+-.+.-.. +. .|.+|..+..... +..+|+-.. ..+.++++|..+.+-..+..
T Consensus 248 ~~v~v~D~~t~~~~~~i~~~g~~~~~~~~~~~~~v~~i~~s~~~~~~~vs~~------~~g~i~vvd~~~~~~l~~~~-- 319 (543)
T 1nir_A 248 PQFAIMDGETLEPKQIVSTRGMTVDTQTYHPEPRVAAIIASHEHPEFIVNVK------ETGKVLLVNYKDIDNLTVTS-- 319 (543)
T ss_dssp SEEEEEETTTCCEEEEEECCEECSSSCCEESCCCEEEEEECSSSSEEEEEET------TTTEEEEEECTTSSSCEEEE--
T ss_pred CeEEEEeccccccceeecccCcccCccccccCCceEEEEECCCCCEEEEEEC------CCCeEEEEEecCCCcceeEE--
Confidence 4678889888754333221 10 1233333333333 455555543 23678999987654222111
Q ss_pred CCCCCcceeEEEEE-CCE-EEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcc
Q 011998 132 MVLSPRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 132 ~~p~~R~~hs~~~~-~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
.+..+.-|..+.. +++ +|+.+.. .+.+.++|+.+++-...-..+..|.+..+.. . .. -.++.+|+.+.
T Consensus 320 -i~~~~~~~~~~~spdg~~l~va~~~------~~~v~v~D~~tg~l~~~i~~g~~ph~g~g~~-~-~~-p~~g~~~~s~~ 389 (543)
T 1nir_A 320 -IGAAPFLHDGGWDSSHRYFMTAANN------SNKVAVIDSKDRRLSALVDVGKTPHPGRGAN-F-VH-PKYGPVWSTSH 389 (543)
T ss_dssp -EECCSSCCCEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSBCCTTCEE-E-EE-TTTEEEEEEEB
T ss_pred -eccCcCccCceECCCCCEEEEEecC------CCeEEEEECCCCeEEEeeccCCCCCCCCCcc-c-CC-CCCccEEEecc
Confidence 1122333333333 344 5544332 3468889999987655444444444332222 1 21 12467777654
Q ss_pred cCCCCCccCcEEEEEccc
Q 011998 210 CNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 210 ~~~~~~~~~dv~~ld~~~ 227 (473)
... +.+.++++..
T Consensus 390 ~~d-----~~V~v~d~~~ 402 (543)
T 1nir_A 390 LGD-----GSISLIGTDP 402 (543)
T ss_dssp SSS-----SEEEEEECCT
T ss_pred CCC-----ceEEEEEeCC
Confidence 322 2466677655
No 119
>2xdw_A Prolyl endopeptidase; alpha/beta-hydrolase, amnesia, beta-propeller, hydrolase, in; HET: PHQ TAM; 1.35A {Sus scrofa} PDB: 1qfm_A 1qfs_A* 1h2w_A* 3eq7_A* 3eq8_A* 3eq9_A* 1e8m_A* 1e8n_A 1h2z_A 1uoo_A 1uop_A 1uoq_A 1o6f_A 1h2x_A 1h2y_A* 1o6g_A 1vz3_A 1e5t_A 1vz2_A 3ddu_A*
Probab=73.80 E-value=96 Score=32.84 Aligned_cols=144 Identities=10% Similarity=0.019 Sum_probs=78.6
Q ss_pred eCeEEEEECCC------C--eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCC---CEEEee
Q 011998 60 YNDLYILNTET------F--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELN 128 (473)
Q Consensus 60 ~~dv~~yd~~t------~--~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~---~W~~l~ 128 (473)
.+++|++|+.+ . .|..+.... .. ........++.||+.+..+. ....++++|+.+. .|+.+.
T Consensus 258 ~~~l~~~d~~~~~~~~~~~~~~~~l~~~~---~~-~~~~~s~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~~l~ 330 (710)
T 2xdw_A 258 VNRLWYCDLQQESNGITGILKWVKLIDNF---EG-EYDYVTNEGTVFTFKTNRHS---PNYRLINIDFTDPEESKWKVLV 330 (710)
T ss_dssp CCEEEEEEGGGSSSSSCSSCCCEEEECSS---SS-CEEEEEEETTEEEEEECTTC---TTCEEEEEETTSCCGGGCEEEE
T ss_pred ccEEEEEECcccccccCCccceEEeeCCC---Cc-EEEEEeccCCEEEEEECCCC---CCCEEEEEeCCCCCcccceecc
Confidence 46899999876 4 577775421 11 12223344788888876543 2467999999876 588876
Q ss_pred CCCCCCCC-cceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCc-EEEEeeCCCCCCCcceeeEEEeccccCCEEE
Q 011998 129 TSGMVLSP-RAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-WTKVITTGEGPSARFSVAGDCLDPLKGGVLV 205 (473)
Q Consensus 129 ~~g~~p~~-R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~-W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~ 205 (473)
+ ... ..-...... +++|++..... -...++++|+.+++ .+.+.. + ... ..+..... .++.++
T Consensus 331 ~----~~~~~~~~~~~~~~~~~lv~~~~~~----g~~~l~~~~~~~g~~~~~l~~----~-~~~-v~~~~~s~-d~~~l~ 395 (710)
T 2xdw_A 331 P----EHEKDVLEWVACVRSNFLVLCYLHD----VKNTLQLHDLATGALLKIFPL----E-VGS-VVGYSGQK-KDTEIF 395 (710)
T ss_dssp C----CCSSCEEEEEEEETTTEEEEEEEET----TEEEEEEEETTTCCEEEEECC----C-SSE-EEEEECCT-TCSEEE
T ss_pred C----CCCCCeEEEEEEEcCCEEEEEEEEC----CEEEEEEEECCCCCEEEecCC----C-Cce-EEEEecCC-CCCEEE
Confidence 4 112 122234445 66777665432 23458999986654 444432 2 111 12222221 233444
Q ss_pred EE-cccCCCCCccCcEEEEEccccc
Q 011998 206 FI-GGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 206 v~-GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
+. .+.. .-..+|.+|..+.+
T Consensus 396 ~~~ss~~----~P~~i~~~d~~tg~ 416 (710)
T 2xdw_A 396 YQFTSFL----SPGIIYHCDLTKEE 416 (710)
T ss_dssp EEEECSS----CCCEEEEEETTSSS
T ss_pred EEEeCCC----CCCEEEEEECCCCc
Confidence 33 2222 23568888876644
No 120
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=73.66 E-value=85 Score=32.82 Aligned_cols=149 Identities=11% Similarity=0.052 Sum_probs=80.6
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCC-CCCCCCc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTS-GMVLSPR 137 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~-g~~p~~R 137 (473)
..+++.|..+.....+... +..++-|..... ++ .+|+.-. ..+.+.++|+.+++-...-.. +..|.|.
T Consensus 320 g~v~~vd~~~~~~~~v~~i---~~~~~~~d~~~~pdgr~~~va~~------~sn~V~ViD~~t~kl~~~i~vgg~~Phpg 390 (567)
T 1qks_A 320 GKILLVDYTDLNNLKTTEI---SAERFLHDGGLDGSHRYFITAAN------ARNKLVVIDTKEGKLVAIEDTGGQTPHPG 390 (567)
T ss_dssp TEEEEEETTCSSEEEEEEE---ECCSSEEEEEECTTSCEEEEEEG------GGTEEEEEETTTTEEEEEEECSSSSBCCT
T ss_pred CeEEEEecCCCccceeeee---eccccccCceECCCCCEEEEEeC------CCCeEEEEECCCCcEEEEEeccCcCCCCc
Confidence 5788888887665554433 445666665544 33 4555422 357799999999875444333 4455553
Q ss_pred ceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCc-----EEEEeeCCCCCCCcceeeEEEeccccCCEEEEEccc
Q 011998 138 AGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGL-----WTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGC 210 (473)
Q Consensus 138 ~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~-----W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~ 210 (473)
.+... .. ++.+|+.+-.. .+.+.++|..+.. |+.+.........-.. +... -.+..+|+---.
T Consensus 391 ~g~~~-~~p~~g~v~~t~~~g-----~~~Vsvid~~~~~~~~~~~kvv~~i~~~g~g~~~---i~~~-p~~~~l~v~~~~ 460 (567)
T 1qks_A 391 RGANF-VHPTFGPVWATSHMG-----DDSVALIGTDPEGHPDNAWKILDSFPALGGGSLF---IKTH-PNSQYLYVDATL 460 (567)
T ss_dssp TCEEE-EETTTEEEEEEEBSS-----SSEEEEEECCTTTCTTTBTSEEEEEECSCSCCCC---EECC-TTCSEEEEECTT
T ss_pred cceee-ECCCCCcEEEeCCCC-----CCeEEEecCCCCCCccccCEEEEEEecCCCCCEE---EEeC-CCCCeEEEecCC
Confidence 33332 33 24577765332 1347888876632 8776653211111011 1111 135678874322
Q ss_pred CCCCCccCcEEEEEcccc
Q 011998 211 NKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 211 ~~~~~~~~dv~~ld~~~~ 228 (473)
+.+....+.+.+||..+.
T Consensus 461 ~~~~~~~~~v~v~d~~~~ 478 (567)
T 1qks_A 461 NPEAEISGSVAVFDIKAM 478 (567)
T ss_dssp CSSHHHHTCEEEEEGGGC
T ss_pred CCCcccCceEEEEECCcc
Confidence 222224568999998875
No 121
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=73.58 E-value=52 Score=29.71 Aligned_cols=105 Identities=15% Similarity=0.203 Sum_probs=58.0
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE---EEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccce
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSD 113 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~nd 113 (473)
++++|+|=| +.+|+|+-.+-.- +.|...|-+..+..--++... ++++|+|-| +.
T Consensus 79 ~~~iyfFkG-------------~~~w~~~~~~~~~gyPk~I~~~GlP~~~~~IDAA~~~~~~gk~yfFkG--------~~ 137 (207)
T 1pex_A 79 HDLIFIFRG-------------RKFWALNGYDILEGYPKKISELGLPKEVKKISAAVHFEDTGKTLLFSG--------NQ 137 (207)
T ss_dssp TTEEEEEET-------------TEEEEESTTCCCTTCSEESTTTTCCTTCCCCCEEEECTTTSEEEEEET--------TE
T ss_pred CCcEEEEcc-------------CEEEEEeCCeeccCCceeccccCCCCCCccccEEEEeCCCCEEEEEeC--------CE
Confidence 589999988 3578886332111 122222211111122233333 489999977 56
Q ss_pred EEEEECCCCCEEEeeC------CCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 114 VHILDTDTLTWKELNT------SGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 114 v~~yD~~t~~W~~l~~------~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
.|+||..+++-..--+ -..+| ..-.++...++++|+|-|. ..|+||..+.+
T Consensus 138 ywr~d~~~~~~d~gyPr~i~~~~~Gip--~~iDaAf~~~g~~YfFkg~--------~y~rf~~~~~~ 194 (207)
T 1pex_A 138 VWRYDDTNHIMDKDYPRLIEEDFPGIG--DKVDAVYEKNGYIYFFNGP--------IQFEYSIWSNR 194 (207)
T ss_dssp EEEEETTTTEECSSCCCBHHHHSTTSC--SCCSEEEEETTEEEEEETT--------EEEEEETTTTE
T ss_pred EEEEeCcCccccCCCCccHHHcCCCCC--CCccEEEEcCCcEEEEECC--------EEEEEeCCccE
Confidence 7999987653210000 01122 2234555568999999775 38899887654
No 122
>1qks_A Cytochrome CD1 nitrite reductase; enzyme, oxidoreductase, denitrification, electron transport, periplasmic; HET: HEC DHE; 1.28A {Paracoccus pantotrophus} SCOP: a.3.1.2 b.70.2.1 PDB: 1aof_A* 1aoq_A* 1aom_A* 1e2r_A* 1hj5_A* 1h9x_A* 1h9y_A* 1hcm_A* 1hj3_A* 1hj4_A* 1dy7_A* 1gq1_A*
Probab=73.50 E-value=93 Score=32.53 Aligned_cols=145 Identities=15% Similarity=0.128 Sum_probs=75.7
Q ss_pred CeEEEEECCCCeEEEeecCCC--------CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGN--------PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGM 132 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~--------~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~ 132 (473)
+.+.++|..+.+=.+.-+.+. .|.+|..+.....++..+++-= .-...+++.|..+.....+..
T Consensus 266 ~~v~ViD~~t~~~~~~i~~~~~~~~~~~~~p~~rva~i~~s~~~~~~vv~~-----~~~g~v~~vd~~~~~~~~v~~--- 337 (567)
T 1qks_A 266 PQYVIMDGETLEPKKIQSTRGMTYDEQEYHPEPRVAAILASHYRPEFIVNV-----KETGKILLVDYTDLNNLKTTE--- 337 (567)
T ss_dssp TEEEEEETTTCCEEEEEECCEECTTTCCEESCCCEEEEEECSSSSEEEEEE-----TTTTEEEEEETTCSSEEEEEE---
T ss_pred CeEEEEECCCCcEEEEEeccccccccccccCCCceEEEEEcCCCCEEEEEe-----cCCCeEEEEecCCCccceeee---
Confidence 567888988765433222211 1344554443333333333321 124678999988776655543
Q ss_pred CCCCcceeEEEEE-CCE-EEEEecccCCCCccccEEEEeCCCCcEEEEeeC-CCCCCCcceeeEEEeccccCCEEEEEcc
Q 011998 133 VLSPRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT-GEGPSARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 133 ~p~~R~~hs~~~~-~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~-g~~P~~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
.+..+.-|..... +++ +|+.... .+.+.++|+++++=...... +..|.+..+.. . +.+ ..+.+|+.+-
T Consensus 338 i~~~~~~~d~~~~pdgr~~~va~~~------sn~V~ViD~~t~kl~~~i~vgg~~Phpg~g~~-~-~~p-~~g~v~~t~~ 408 (567)
T 1qks_A 338 ISAERFLHDGGLDGSHRYFITAANA------RNKLVVIDTKEGKLVAIEDTGGQTPHPGRGAN-F-VHP-TFGPVWATSH 408 (567)
T ss_dssp EECCSSEEEEEECTTSCEEEEEEGG------GTEEEEEETTTTEEEEEEECSSSSBCCTTCEE-E-EET-TTEEEEEEEB
T ss_pred eeccccccCceECCCCCEEEEEeCC------CCeEEEEECCCCcEEEEEeccCcCCCCcccee-e-ECC-CCCcEEEeCC
Confidence 4455666655443 233 5554322 46699999998865444444 45555433322 1 211 1356666542
Q ss_pred cCCCCCccCcEEEEEccc
Q 011998 210 CNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 210 ~~~~~~~~~dv~~ld~~~ 227 (473)
.. -+.+.++++..
T Consensus 409 ~g-----~~~Vsvid~~~ 421 (567)
T 1qks_A 409 MG-----DDSVALIGTDP 421 (567)
T ss_dssp SS-----SSEEEEEECCT
T ss_pred CC-----CCeEEEecCCC
Confidence 21 13467777665
No 123
>2z2n_A Virginiamycin B lyase; seven-bladed beta-propeller, antibiotic resistance, E mechanism, virginiamycin B hydrolase streptogramin; HET: MSE; 1.65A {Staphylococcus aureus} PDB: 2z2o_A 2z2p_A*
Probab=73.28 E-value=53 Score=29.61 Aligned_cols=172 Identities=9% Similarity=-0.023 Sum_probs=88.3
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+.+||+. ..+....... . ...-++++.. ++.+|+.... ...+++||+. .++..+.... .
T Consensus 37 ~v~~~d~~-~~~~~~~~~~--~-~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~~~~---~ 97 (299)
T 2z2n_A 37 MISCINLD-GKITEYPLPT--P-DAKVMCLTISSDGEVWFTENA-----------ANKIGRITKK-GIIKEYTLPN---P 97 (299)
T ss_dssp EEEEECTT-CCEEEEECSS--T-TCCEEEEEECTTSCEEEEETT-----------TTEEEEECTT-SCEEEEECSS---T
T ss_pred cEEEEcCC-CCeEEecCCc--c-cCceeeEEECCCCCEEEeCCC-----------CCeEEEECCC-CcEEEEeCCC---c
Confidence 46777777 6665542110 1 1122233332 4678877542 1358889886 4555554210 1
Q ss_pred CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCcc
Q 011998 85 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 85 ~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ 162 (473)
...-++++.. ++.+|+.... ...+++||+ +.+....... .....-+..+.. ++++|+.... .
T Consensus 98 ~~~~~~i~~~~~g~l~v~~~~------~~~i~~~d~-~g~~~~~~~~---~~~~~~~~i~~~~~g~l~v~~~~------~ 161 (299)
T 2z2n_A 98 DSAPYGITEGPNGDIWFTEMN------GNRIGRITD-DGKIREYELP---NKGSYPSFITLGSDNALWFTENQ------N 161 (299)
T ss_dssp TCCEEEEEECTTSCEEEEETT------TTEEEEECT-TCCEEEEECS---STTCCEEEEEECTTSCEEEEETT------T
T ss_pred CCCceeeEECCCCCEEEEecC------CceEEEECC-CCCEEEecCC---CCCCCCceEEEcCCCCEEEEeCC------C
Confidence 1223444444 5788886542 246889998 6666655421 111222333333 4568875421 2
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEc
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 225 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~ 225 (473)
+.+++||+ +.+...+.... ......+..++ .++.||+.... .+.+++++.
T Consensus 162 ~~i~~~~~-~g~~~~~~~~~----~~~~~~~i~~~--~~g~l~v~~~~------~~~i~~~~~ 211 (299)
T 2z2n_A 162 NAIGRITE-SGDITEFKIPT----PASGPVGITKG--NDDALWFVEII------GNKIGRITT 211 (299)
T ss_dssp TEEEEECT-TCCEEEEECSS----TTCCEEEEEEC--TTSSEEEEETT------TTEEEEECT
T ss_pred CEEEEEcC-CCcEEEeeCCC----CCCcceeEEEC--CCCCEEEEccC------CceEEEECC
Confidence 45899999 77776653321 11112233343 34667775422 234677776
No 124
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=72.84 E-value=46 Score=34.10 Aligned_cols=59 Identities=12% Similarity=0.193 Sum_probs=39.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
++++|+|-| +..|+||..+.+...-.=.+ .| . --++....+++|+|-| +..|+||
T Consensus 158 ~~~~yfFkG-------------~~yw~yd~~~~~~~~~~w~g-i~--~-iDAA~~~~g~~YfFkG--------~~y~rfd 212 (460)
T 1qhu_A 158 DEGILFFQG-------------NRKWFWDLTTGTKKERSWPA-VG--N-CTSALRWLGRYYCFQG--------NQFLRFN 212 (460)
T ss_dssp SSEEEEEET-------------TEEEEEETTTTEEEEECCTT-SC--C-CSEEEEETTEEEEEET--------TEEEEEC
T ss_pred CCeEEEEec-------------ccEEEEecccceeecccCCC-CC--c-cchheeeCCceEEEEC--------CEEEEEc
Confidence 678999988 36899999887655321111 12 2 2455555799999987 4567788
Q ss_pred CCCC
Q 011998 119 TDTL 122 (473)
Q Consensus 119 ~~t~ 122 (473)
..+.
T Consensus 213 ~~~~ 216 (460)
T 1qhu_A 213 PVSG 216 (460)
T ss_dssp TTTC
T ss_pred CccC
Confidence 6554
No 125
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=72.06 E-value=75 Score=33.76 Aligned_cols=148 Identities=13% Similarity=0.105 Sum_probs=82.3
Q ss_pred CcEEEEECCCC--eEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC---eEEEeecC
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF---VWKRATTS 79 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~---~W~~l~~~ 79 (473)
+++|++|..+. .|..+.. +...........++++|+....+. ....++++|+.+. .|+.+.+.
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~----~~~~~~~~~~~~g~~l~~~t~~~~--------~~~~l~~~d~~~~~~~~~~~l~~~ 326 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQG----DLDADVSLVDNKGSTLYLLTNRDA--------PNRRLVTVDAANPGPAHWRDLIPE 326 (693)
T ss_dssp CEEEEEETTSTTCCCEEEEC----SSSSCEEEEEEETTEEEEEECTTC--------TTCEEEEEETTSCCGGGCEEEECC
T ss_pred cEEEEEECCCCCCceEEEeC----CCCceEEEEeccCCEEEEEECCCC--------CCCEEEEEeCCCCCccccEEEecC
Confidence 57888888765 6777642 111111223445788998876421 1347899998764 48876543
Q ss_pred CCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-EC-CEEEE-Eeccc
Q 011998 80 GNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FG-KNLFV-FGGFT 156 (473)
Q Consensus 80 g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~-~~LyV-~GG~~ 156 (473)
. . ... +....++.|++..-.+ -...++++|+.+...+.+. +|.......... .+ +.|++ +.+.
T Consensus 327 ~--~--~~~-~~s~~g~~lv~~~~~~----g~~~l~~~d~~g~~~~~l~----~p~~~~~~~~~~~~d~~~l~~~~ss~- 392 (693)
T 3iuj_A 327 R--Q--QVL-TVHSGSGYLFAEYMVD----ATARVEQFDYEGKRVREVA----LPGLGSVSGFNGKHDDPALYFGFENY- 392 (693)
T ss_dssp C--S--SCE-EEEEETTEEEEEEEET----TEEEEEEECTTSCEEEEEC----CSSSSEEEECCCCTTCSCEEEEEECS-
T ss_pred C--C--CEE-EEEEECCEEEEEEEEC----CeeEEEEEECCCCeeEEee----cCCCceEEeeecCCCCCEEEEEecCC-
Confidence 1 1 112 4445577776654322 2457899998876666654 232221111111 12 23433 2222
Q ss_pred CCCCccccEEEEeCCCCcEEEEeeC
Q 011998 157 DSQNLYDDLYMIDVDSGLWTKVITT 181 (473)
Q Consensus 157 ~~~~~~ndv~~yd~~t~~W~~v~~~ 181 (473)
..-..++.||+.+++++.+...
T Consensus 393 ---~tP~~l~~~d~~~g~~~~l~~~ 414 (693)
T 3iuj_A 393 ---AQPPTLYRFEPKSGAISLYRAS 414 (693)
T ss_dssp ---SSCCEEEEECTTTCCEEEEECC
T ss_pred ---CCCCEEEEEECCCCeEEEEEeC
Confidence 1235699999999888877653
No 126
>3jro_A Fusion protein of protein transport protein SEC13 nucleoporin NUP145; protein complex, cytoplasmic vesicle, endoplasmic reticulum, transport, membrane, mRNA transport; 4.00A {Saccharomyces cerevisiae}
Probab=72.01 E-value=20 Score=38.68 Aligned_cols=54 Identities=11% Similarity=0.165 Sum_probs=30.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C--CEEEEEecCCCCCCCCCceeeCeEEEEECCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G--KRLFIFGGCGKSSNTNDEVYYNDLYILNTETF 71 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~--~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~ 71 (473)
..+.++|..+++|........ ... .-.++... + +.+++.|+.+ ..+.+||+.+.
T Consensus 77 g~I~vwd~~~~~~~~~~~~~~-h~~-~V~~v~~sp~~~~~~l~sgs~d-----------g~I~vwdl~~~ 133 (753)
T 3jro_A 77 GKVLIWKEENGRWSQIAVHAV-HSA-SVNSVQWAPHEYGPLLLVASSD-----------GKVSVVEFKEN 133 (753)
T ss_dssp SCEEEEEEETTEEEEEEEECC-CSS-CEEEEEECCGGGCSEEEEEETT-----------SEEEEEECCSS
T ss_pred CeEEEEECCCCcccccccccC-CCC-CeEEEEECCCCCCCEEEEEeCC-----------CcEEEEEeecC
Confidence 357888888888766542211 111 11122222 2 5677777742 35788888765
No 127
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=71.55 E-value=64 Score=29.84 Aligned_cols=150 Identities=9% Similarity=0.042 Sum_probs=70.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCC-CeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET-FVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t-~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++..++.|+.+ ..+.+||+.+ ..-...... . ...-.+++.. ++.+++.|+.+ ..+.+
T Consensus 186 ~~~~l~~~~~d-----------g~i~i~d~~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~l~~~~~d------~~i~v 244 (369)
T 3zwl_B 186 KGKYIIAGHKD-----------GKISKYDVSNNYEYVDSIDL---H-EKSISDMQFSPDLTYFITSSRD------TNSFL 244 (369)
T ss_dssp GGCEEEEEETT-----------SEEEEEETTTTTEEEEEEEC---C-SSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCcEeEEEEec---C-CCceeEEEECCCCCEEEEecCC------ceEEE
Confidence 35566666631 3688999987 333222111 1 1111222222 56667777643 35889
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCc--------cccEEEEeCCCCcEEEEeeCCCCCCC
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNL--------YDDLYMIDVDSGLWTKVITTGEGPSA 187 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~--------~ndv~~yd~~t~~W~~v~~~g~~P~~ 187 (473)
||..+.+....-. .......++.. ++..+++|+....... ...+..||..+..=...-.. ...
T Consensus 245 ~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~---~~~ 316 (369)
T 3zwl_B 245 VDVSTLQVLKKYE-----TDCPLNTAVITPLKEFIILGGGQEAKDVTTTSANEGKFEARFYHKIFEEEIGRVQG---HFG 316 (369)
T ss_dssp EETTTCCEEEEEE-----CSSCEEEEEECSSSSEEEEEECCC-------------CEEEEEETTTCCEEEEEEC---CSS
T ss_pred EECCCCceeeeec-----CCCCceeEEecCCCceEEEeecCCCceEEEEecCCCcceeEEEecCCCcchhheec---ccC
Confidence 9998876544332 11111222222 3445555554221111 12578888877643222211 111
Q ss_pred cceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 188 RFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 188 R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
. ..++.+. .++.+++.||.+.. +.+++...
T Consensus 317 ~--v~~~~~s--~~~~~l~s~~~dg~------v~iw~~~~ 346 (369)
T 3zwl_B 317 P--LNTVAIS--PQGTSYASGGEDGF------IRLHHFEK 346 (369)
T ss_dssp C--EEEEEEC--TTSSEEEEEETTSE------EEEEEECH
T ss_pred c--EEEEEEC--CCCCEEEEEcCCCe------EEEEECcc
Confidence 1 1222232 35677777776542 55555544
No 128
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=70.88 E-value=29 Score=32.90 Aligned_cols=107 Identities=10% Similarity=0.025 Sum_probs=50.3
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CC-EEEEEeCCCCCCCccceEEEEEC--CCCCEEEeeCCCCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KN-KIIVIGGEDGHDYYLSDVHILDT--DTLTWKELNTSGMVLS 135 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~-~IyV~GG~~~~~~~~ndv~~yD~--~t~~W~~l~~~g~~p~ 135 (473)
+.+.+||+.+.++..+......+..........+ ++ .||+... .. .+.+.+|+. .+.+++.+.. .+.
T Consensus 233 ~~v~v~~~~~g~~~~~~~~~~~~~~~~~~~~i~~spdg~~l~v~~~-~~----~~~i~v~~~~~~~g~~~~~~~---~~~ 304 (361)
T 3scy_A 233 GTVIAFRYADGMLDEIQTVAADTVNAQGSGDIHLSPDGKYLYASNR-LK----ADGVAIFKVDETNGTLTKVGY---QLT 304 (361)
T ss_dssp CEEEEEEEETTEEEEEEEEESCSSCCCCEEEEEECTTSSEEEEEEC-SS----SCEEEEEEECTTTCCEEEEEE---EEC
T ss_pred CeEEEEEecCCceEEeEEEecCCCCCCCcccEEECCCCCEEEEECC-CC----CCEEEEEEEcCCCCcEEEeeE---ecC
Confidence 4588888888877655432212221122223333 44 5665432 20 234555554 5677766653 221
Q ss_pred CcceeEEEEE-CCE-EEEEecccCCCCccccEEEEeCCCCcEEEEe
Q 011998 136 PRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 136 ~R~~hs~~~~-~~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~ 179 (473)
...-..++.. +++ ||+.+.. .. .-.+|.+|+++++-+.+.
T Consensus 305 g~~~~~~~~spdg~~l~~~~~~-~~---~v~v~~~d~~~g~~~~~~ 346 (361)
T 3scy_A 305 GIHPRNFIITPNGKYLLVACRD-TN---VIQIFERDQATGLLTDIK 346 (361)
T ss_dssp SSCCCEEEECTTSCEEEEEETT-TT---EEEEEEECTTTCCEEECS
T ss_pred CCCCceEEECCCCCEEEEEECC-CC---CEEEEEEECCCCcEeecc
Confidence 1111223332 344 5554432 11 123555777777666554
No 129
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=70.43 E-value=61 Score=29.16 Aligned_cols=172 Identities=6% Similarity=-0.053 Sum_probs=87.7
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
+.+++||+. .++....... ....-+.++.. ++.+|+.... ...+++||+. .+...+....
T Consensus 83 ~~v~~~d~~-g~~~~~~~~~---~~~~~~~i~~~~~g~l~v~~~~-----------~~~i~~~~~~-g~~~~~~~~~--- 143 (300)
T 2qc5_A 83 NKIGKLSKK-GGFTEYPLPQ---PDSGPYGITEGLNGDIWFTQLN-----------GDRIGKLTAD-GTIYEYDLPN--- 143 (300)
T ss_dssp TEEEEECTT-SCEEEEECSS---TTCCEEEEEECSTTCEEEEETT-----------TTEEEEECTT-SCEEEEECSS---
T ss_pred CeEEEECCC-CCeEEecCCC---CCCCCccceECCCCCEEEEccC-----------CCeEEEECCC-CCEEEccCCC---
Confidence 347777777 5555442211 11222333333 4778877542 1368899987 6655443211
Q ss_pred CCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCC
Q 011998 84 SARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQN 160 (473)
Q Consensus 84 ~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~ 160 (473)
....-+.++.. +++||+.... ...+++||+ +.++..... +..........+ ++.||+....
T Consensus 144 ~~~~~~~i~~d~~g~l~v~~~~------~~~i~~~~~-~g~~~~~~~----~~~~~~~~~i~~d~~g~l~v~~~~----- 207 (300)
T 2qc5_A 144 KGSYPAFITLGSDNALWFTENQ------NNSIGRITN-TGKLEEYPL----PTNAAAPVGITSGNDGALWFVEIM----- 207 (300)
T ss_dssp TTCCEEEEEECTTSSEEEEETT------TTEEEEECT-TCCEEEEEC----SSTTCCEEEEEECTTSSEEEEETT-----
T ss_pred CCCCceeEEECCCCCEEEEecC------CCeEEEECC-CCcEEEeeC----CCCCCCcceEEECCCCCEEEEccC-----
Confidence 11222344433 5678876431 256899998 677766542 222122222333 4568876432
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 225 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~ 225 (473)
.+.+++||+ +..+...... .......+..++ .++.||+.... -+.+.+|+.
T Consensus 208 -~~~i~~~~~-~g~~~~~~~~----~~~~~~~~i~~d--~~g~l~v~~~~------~~~i~~~~~ 258 (300)
T 2qc5_A 208 -GNKIGRITT-TGEISEYDIP----TPNARPHAITAG--KNSEIWFTEWG------ANQIGRITN 258 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECS----STTCCEEEEEEC--STTCEEEEETT------TTEEEEECT
T ss_pred -CCEEEEEcC-CCcEEEEECC----CCCCCceEEEEC--CCCCEEEeccC------CCeEEEECC
Confidence 235899998 6666665432 111122334443 35667776421 234666765
No 130
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=70.38 E-value=61 Score=30.97 Aligned_cols=105 Identities=14% Similarity=0.198 Sum_probs=54.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~ 115 (473)
+++.++.|+.+ ..+.+||..+.+-...-.. ....-.++.+ +..+++.||.++ .+.
T Consensus 150 dg~~l~sgs~d-----------g~v~iwd~~~~~~~~~~~~-----h~~~v~~v~~s~~~~~~~~s~~~dg------~v~ 207 (357)
T 4g56_B 150 DGTQAVSGGKD-----------FSVKVWDLSQKAVLKSYNA-----HSSEVNCVAACPGKDTIFLSCGEDG------RIL 207 (357)
T ss_dssp SSSEEEEEETT-----------SCEEEEETTTTEEEEEECC-----CSSCEEEEEECTTCSSCEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEcC-----CCCCEEEEEEccCCCceeeeeccCC------ceE
Confidence 46677777742 3588899988765433211 1111222222 345777777654 367
Q ss_pred EEECCCCCEEEeeCCCCCCCCcceeEEEEE---CCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 116 ILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 116 ~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
+||+.+.+-..... .........++.+ ++.+++.|+.. ..+.+||+.+.+
T Consensus 208 ~wd~~~~~~~~~~~---~~~~~~~v~~v~~sp~~~~~la~g~~d------~~i~~wd~~~~~ 260 (357)
T 4g56_B 208 LWDTRKPKPATRID---FCASDTIPTSVTWHPEKDDTFACGDET------GNVSLVNIKNPD 260 (357)
T ss_dssp ECCTTSSSCBCBCC---CTTCCSCEEEEEECTTSTTEEEEEESS------SCEEEEESSCGG
T ss_pred EEECCCCceeeeee---eccccccccchhhhhcccceEEEeecc------cceeEEECCCCc
Confidence 78887665322211 1111112223333 34577777652 248888987654
No 131
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=69.89 E-value=51 Score=36.95 Aligned_cols=105 Identities=10% Similarity=0.055 Sum_probs=58.3
Q ss_pred CeEE-EEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLY-ILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~-~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+| +||..+.....+. . ........+..-+++.+++++.+ .+++++|+.+.+-..+... ......
T Consensus 358 ~~l~~~~d~~~~~~~~l~-~---~~~~~~~~~~SpDG~~la~~~~~------~~v~~~d~~tg~~~~~~~~---~~~~v~ 424 (1045)
T 1k32_A 358 GDFLGIYDYRTGKAEKFE-E---NLGNVFAMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERS---REAMIT 424 (1045)
T ss_dssp EEEEEEEETTTCCEEECC-C---CCCSEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEEC---SSSCCC
T ss_pred CceEEEEECCCCCceEec-C---CccceeeeEECCCCCEEEEECCC------CeEEEEECCCCceEEeccC---CCCCcc
Confidence 3688 8999888766553 1 11122222222256666666532 4799999999887766531 111112
Q ss_pred eEEEEECCEEEEEecccC----CCCccccEEEEeCCCCcEEEE
Q 011998 140 HSTVAFGKNLFVFGGFTD----SQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 140 hs~~~~~~~LyV~GG~~~----~~~~~ndv~~yd~~t~~W~~v 178 (473)
..+..-+++.+++++... .......++++|+.+.+...+
T Consensus 425 ~~~~SpDG~~la~~~~~~~~~~~~~~~~~i~l~d~~~g~~~~l 467 (1045)
T 1k32_A 425 DFTISDNSRFIAYGFPLKHGETDGYVMQAIHVYDMEGRKIFAA 467 (1045)
T ss_dssp CEEECTTSCEEEEEEEECSSTTCSCCEEEEEEEETTTTEEEEC
T ss_pred ceEECCCCCeEEEEecCccccccCCCCCeEEEEECCCCcEEEe
Confidence 222233566556655422 012345799999998764444
No 132
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=69.64 E-value=61 Score=28.91 Aligned_cols=104 Identities=16% Similarity=0.288 Sum_probs=59.3
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE-EEeecCCCCCCC--ceeeEEEEECCEEEEEeCCCCCCCccceEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW-KRATTSGNPPSA--RDSHTCSSWKNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W-~~l~~~g~~P~~--R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~ 115 (473)
++++|+|-| +..|+|+..+..- +.+...| .|.. .-..+....++++|+|-| +..|
T Consensus 64 ~~~~yfFkG-------------~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg--------~~yw 121 (195)
T 1itv_A 64 SKKLFFFSG-------------RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSG--------RRLW 121 (195)
T ss_dssp TCCEEEEET-------------TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEET--------TEEE
T ss_pred CCeEEEEeC-------------CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeC--------CEEE
Confidence 578999988 3678888543211 1121212 2221 222222223689999977 4679
Q ss_pred EEECCCCCEEE-----ee-CCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 116 ILDTDTLTWKE-----LN-TSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 116 ~yD~~t~~W~~-----l~-~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
+||..+++-.. +. .-..+ |..-.++...++.+|+|-|. ..|+||..+..
T Consensus 122 r~d~~~~~~~~gyPr~i~~~w~Gv--p~~idaa~~~~g~~Yffkg~--------~y~~~~~~~~~ 176 (195)
T 1itv_A 122 RFDVKAQMVDPRSASEVDRMFPGV--PLDTHDVFQFREKAYFCQDR--------FYWRVSSRSEL 176 (195)
T ss_dssp EEETTTTEECGGGCEEHHHHSTTS--CSSCSEEEEETTEEEEEETT--------EEEEEECCTTC
T ss_pred EEeCCcccccCCCccChhhcCCCC--CCCCCEEEEeCCeEEEEeCC--------EEEEEECCccE
Confidence 99987754211 11 00112 23345566668999999875 37888877654
No 133
>3ow8_A WD repeat-containing protein 61; structural genomics consortium, SGC, transcriptio; 2.30A {Homo sapiens}
Probab=69.48 E-value=75 Score=29.79 Aligned_cols=137 Identities=12% Similarity=0.080 Sum_probs=69.3
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+++.++.|+.+ ..+.+||+.+.+-...-.. ...+ -.+++. -++.+++.|+.++ .+.+|
T Consensus 175 dg~~lasg~~d-----------g~i~iwd~~~~~~~~~~~~--h~~~--v~~l~~spd~~~l~s~s~dg------~i~iw 233 (321)
T 3ow8_A 175 DGKYLASGAID-----------GIINIFDIATGKLLHTLEG--HAMP--IRSLTFSPDSQLLVTASDDG------YIKIY 233 (321)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEECC--CSSC--CCEEEECTTSCEEEEECTTS------CEEEE
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCcEEEEEcc--cCCc--eeEEEEcCCCCEEEEEcCCC------eEEEE
Confidence 45667777742 3588899988754332211 0111 112222 2677888887654 37889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|..+......-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-. . . .....++.+
T Consensus 234 d~~~~~~~~~~~----~h~~~v~~~~~sp~~~~l~s~s~D------~~v~iwd~~~~~~~~~~~--~-h--~~~v~~v~~ 298 (321)
T 3ow8_A 234 DVQHANLAGTLS----GHASWVLNVAFCPDDTHFVSSSSD------KSVKVWDVGTRTCVHTFF--D-H--QDQVWGVKY 298 (321)
T ss_dssp ETTTCCEEEEEC----CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEEC--C-C--SSCEEEEEE
T ss_pred ECCCcceeEEEc----CCCCceEEEEECCCCCEEEEEeCC------CcEEEEeCCCCEEEEEEc--C-C--CCcEEEEEE
Confidence 988766543221 011111122222 45567777752 248889988764332211 1 1 111222223
Q ss_pred ccccCCEEEEEcccCCC
Q 011998 197 DPLKGGVLVFIGGCNKS 213 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~~ 213 (473)
. .++..++.||.+..
T Consensus 299 s--~~g~~l~s~~~d~~ 313 (321)
T 3ow8_A 299 N--GNGSKIVSVGDDQE 313 (321)
T ss_dssp C--TTSSEEEEEETTCC
T ss_pred C--CCCCEEEEEeCCCe
Confidence 2 35666777776653
No 134
>2qc5_A Streptogramin B lactonase; beta propeller, lyase; 1.80A {Staphylococcus cohnii}
Probab=69.16 E-value=65 Score=28.97 Aligned_cols=172 Identities=12% Similarity=-0.006 Sum_probs=88.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCc-ccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEA-REGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~-R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.+.+||+. .++..... +.. ..-++++.. ++.+|+.... ...+++||+. .++..+....
T Consensus 41 ~~v~~~~~~-~~~~~~~~----~~~~~~~~~i~~~~~g~l~v~~~~-----------~~~v~~~d~~-g~~~~~~~~~-- 101 (300)
T 2qc5_A 41 NKISSLDQS-GRIKEFEV----PTPDAKVMCLIVSSLGDIWFTENG-----------ANKIGKLSKK-GGFTEYPLPQ-- 101 (300)
T ss_dssp TEEEEECTT-SCEEEEEC----SSTTCCEEEEEECTTSCEEEEETT-----------TTEEEEECTT-SCEEEEECSS--
T ss_pred CeEEEECCC-CceEEEEC----CCCCCcceeEEECCCCCEEEEecC-----------CCeEEEECCC-CCeEEecCCC--
Confidence 346677766 55554321 111 122333333 3678886542 1358899988 6666554321
Q ss_pred CCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCC
Q 011998 83 PSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQN 160 (473)
Q Consensus 83 P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~ 160 (473)
....-+.++.. ++.+|+.... .+.+++||+. .+........ ....-+..+.. +++||+....
T Consensus 102 -~~~~~~~i~~~~~g~l~v~~~~------~~~i~~~~~~-g~~~~~~~~~---~~~~~~~i~~d~~g~l~v~~~~----- 165 (300)
T 2qc5_A 102 -PDSGPYGITEGLNGDIWFTQLN------GDRIGKLTAD-GTIYEYDLPN---KGSYPAFITLGSDNALWFTENQ----- 165 (300)
T ss_dssp -TTCCEEEEEECSTTCEEEEETT------TTEEEEECTT-SCEEEEECSS---TTCCEEEEEECTTSSEEEEETT-----
T ss_pred -CCCCCccceECCCCCEEEEccC------CCeEEEECCC-CCEEEccCCC---CCCCceeEEECCCCCEEEEecC-----
Confidence 11223444443 6788886532 2468899987 6666554211 11122233332 3568776432
Q ss_pred ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEc
Q 011998 161 LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYT 225 (473)
Q Consensus 161 ~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~ 225 (473)
.+.+++||+ +.++..+.... ......+..++ .++.||+.... .+.+++|+.
T Consensus 166 -~~~i~~~~~-~g~~~~~~~~~----~~~~~~~i~~d--~~g~l~v~~~~------~~~i~~~~~ 216 (300)
T 2qc5_A 166 -NNSIGRITN-TGKLEEYPLPT----NAAAPVGITSG--NDGALWFVEIM------GNKIGRITT 216 (300)
T ss_dssp -TTEEEEECT-TCCEEEEECSS----TTCCEEEEEEC--TTSSEEEEETT------TTEEEEECT
T ss_pred -CCeEEEECC-CCcEEEeeCCC----CCCCcceEEEC--CCCCEEEEccC------CCEEEEEcC
Confidence 235899998 66776654321 11122334443 35677775321 124677775
No 135
>3ott_A Two-component system sensor histidine kinase; beta-propeller, beta-sandwich, transcription; HET: TBR; 2.30A {Bacteroides thetaiotaomicron} PDB: 3va6_A
Probab=68.84 E-value=53 Score=35.22 Aligned_cols=132 Identities=13% Similarity=0.099 Sum_probs=68.9
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
+-+++||+.+++++..... ..+....-.+++.. ++.|++. .. .-+++||+.+.+++.... ...|
T Consensus 493 ~Gl~~~d~~~~~~~~~~~~-~~~~~~~~~~i~~d~~g~lWig-t~------------~Gl~~~~~~~~~~~~~~~-~gl~ 557 (758)
T 3ott_A 493 KGIDKINPRTREVTKLFAD-ELTGEKSPNYLLCDEDGLLWVG-FH------------GGVMRINPKDESQQSISF-GSFS 557 (758)
T ss_dssp SSEEEEETTTTEEEEECTT-TSCGGGCEEEEEECTTSCEEEE-ET------------TEEEEECC--CCCCBCCC-CC--
T ss_pred CCcEEEeCCCCceEEecCC-CcCCCcccceEEECCCCCEEEE-ec------------CceEEEecCCCceEEecc-cCCC
Confidence 3578899999988876321 11111111222222 3677753 31 248899998887765532 1222
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCcc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ 162 (473)
. ..-+++...++.|++-.. +.+.+||+.+.+..... ++..... .++.. .+.-+.|||.
T Consensus 558 ~-~~i~~i~~~~g~lWi~t~--------~Gl~~~~~~~~~~~~~~----~~~~~~~-~~~~~~~~G~l~fG~~------- 616 (758)
T 3ott_A 558 N-NEILSMTCVKNSIWVSTT--------NGLWIIDRKTMDARQQN----MTNKRFT-SLLFDPKEDCVYLGGA------- 616 (758)
T ss_dssp --CCEEEEEEETTEEEEEES--------SCEEEEETTTCCEEEC------CCCCCS-EEEEETTTTEEEEECB-------
T ss_pred c-cceEEEEECCCCEEEECC--------CCeEEEcCCCceeEEec----CCCCcee-eeEEECCCCcEEEecC-------
Confidence 2 223344444788888542 45889999998876543 2333332 23333 2334556775
Q ss_pred ccEEEEeCCC
Q 011998 163 DDLYMIDVDS 172 (473)
Q Consensus 163 ndv~~yd~~t 172 (473)
+-+.+|+++.
T Consensus 617 ~Gl~~f~p~~ 626 (758)
T 3ott_A 617 DGFGISHSNL 626 (758)
T ss_dssp SEEEEEEC--
T ss_pred CceEEEChhh
Confidence 2377888764
No 136
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=68.69 E-value=78 Score=29.73 Aligned_cols=137 Identities=16% Similarity=0.199 Sum_probs=68.2
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+..-...-.. ....-.++.+ ++.+++.|+.++ .+.+
T Consensus 195 ~~~~l~sg~~d-----------~~v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~d~------~v~i 252 (340)
T 1got_B 195 DTRLFVSGACD-----------ASAKLWDVREGMCRQTFTG-----HESDINAICFFPNGNAFATGSDDA------TCRL 252 (340)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTCSEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CcEEEEECCCCeeEEEEcC-----CcCCEEEEEEcCCCCEEEEEcCCC------cEEE
Confidence 46677788742 3588889887654322111 1111222222 567788887654 4778
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 194 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~ 194 (473)
||+.+.+-...-. .+.....-..+.+ ++++++.|+.+ ..+.+||..+..-...-. + -... ..++
T Consensus 253 wd~~~~~~~~~~~---~~~~~~~v~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~~~~~~~-~--h~~~--v~~~ 318 (340)
T 1got_B 253 FDLRADQELMTYS---HDNIICGITSVSFSKSGRLLLAGYDD------FNCNVWDALKADRAGVLA-G--HDNR--VSCL 318 (340)
T ss_dssp EETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEE-C--CSSC--EEEE
T ss_pred EECCCCcEEEEEc---cCCcccceEEEEECCCCCEEEEECCC------CeEEEEEcccCcEeeEee-c--CCCc--EEEE
Confidence 8887765322211 1111122223333 45577776652 348889987654222111 1 0111 1122
Q ss_pred EeccccCCEEEEEcccCCC
Q 011998 195 CLDPLKGGVLVFIGGCNKS 213 (473)
Q Consensus 195 ~~~~~~~~~l~v~GG~~~~ 213 (473)
.+ ..++.+++.||.+..
T Consensus 319 ~~--s~dg~~l~s~s~D~~ 335 (340)
T 1got_B 319 GV--TDDGMAVATGSWDSF 335 (340)
T ss_dssp EE--CTTSSCEEEEETTSC
T ss_pred EE--cCCCCEEEEEcCCcc
Confidence 22 246677777876653
No 137
>2ghs_A AGR_C_1268P; regucalcin, structural genomics, joint center for structural genomics, JCSG, protein structure initiative, PSI-2; 1.55A {Agrobacterium tumefaciens str} SCOP: b.68.6.1
Probab=68.64 E-value=79 Score=29.77 Aligned_cols=147 Identities=12% Similarity=0.073 Sum_probs=76.6
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEE-EECCEEEEEeCCCCCCCccceEEEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCS-SWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~-~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
+.+|+++.. ...+++||+.+.....+.. +. .-++++ .-++++|+... ..+++||
T Consensus 61 ~~l~~~d~~-----------~~~i~~~d~~~~~~~~~~~----~~--~v~~i~~~~dg~l~v~~~--------~gl~~~d 115 (326)
T 2ghs_A 61 GTAWWFNIL-----------ERELHELHLASGRKTVHAL----PF--MGSALAKISDSKQLIASD--------DGLFLRD 115 (326)
T ss_dssp TEEEEEEGG-----------GTEEEEEETTTTEEEEEEC----SS--CEEEEEEEETTEEEEEET--------TEEEEEE
T ss_pred CEEEEEECC-----------CCEEEEEECCCCcEEEEEC----CC--cceEEEEeCCCeEEEEEC--------CCEEEEE
Confidence 678887653 2468999999887665532 11 122232 23788887541 3599999
Q ss_pred CCCCCEEEeeCCCC-CCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEec
Q 011998 119 TDTLTWKELNTSGM-VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 197 (473)
Q Consensus 119 ~~t~~W~~l~~~g~-~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~ 197 (473)
+.+.+++.+..... .+..+....++--++++|+.............+|+|+ +.+...+..... . ..+.++.
T Consensus 116 ~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~v~~~~~~~~~~~~~l~~~~--~g~~~~~~~~~~----~--~~~i~~s 187 (326)
T 2ghs_A 116 TATGVLTLHAELESDLPGNRSNDGRMHPSGALWIGTMGRKAETGAGSIYHVA--KGKVTKLFADIS----I--PNSICFS 187 (326)
T ss_dssp TTTCCEEEEECSSTTCTTEEEEEEEECTTSCEEEEEEETTCCTTCEEEEEEE--TTEEEEEEEEES----S--EEEEEEC
T ss_pred CCCCcEEEEeeCCCCCCCCCCCCEEECCCCCEEEEeCCCcCCCCceEEEEEe--CCcEEEeeCCCc----c--cCCeEEc
Confidence 99999887753111 1111111112222466776322111112345699998 466655432100 1 1223332
Q ss_pred cccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 198 PLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 198 ~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
. .+..||+.... .+.+|.|+..
T Consensus 188 ~-dg~~lyv~~~~------~~~I~~~d~~ 209 (326)
T 2ghs_A 188 P-DGTTGYFVDTK------VNRLMRVPLD 209 (326)
T ss_dssp T-TSCEEEEEETT------TCEEEEEEBC
T ss_pred C-CCCEEEEEECC------CCEEEEEEcc
Confidence 1 23457775322 2468888864
No 138
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=68.41 E-value=75 Score=29.38 Aligned_cols=107 Identities=12% Similarity=0.093 Sum_probs=56.0
Q ss_pred CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 96 NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 96 ~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+.+++.|+.++ .+.+||..+.+-...-. .....-.++... ++.+++.|+.+ ..+.+||+.+.
T Consensus 85 ~~~l~~~~~dg------~i~v~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~~l~s~~~d------g~i~iwd~~~~ 148 (366)
T 3k26_A 85 HPLLAVAGSRG------IIRIINPITMQCIKHYV----GHGNAINELKFHPRDPNLLLSVSKD------HALRLWNIQTD 148 (366)
T ss_dssp CEEEEEEETTC------EEEEECTTTCCEEEEEE----SCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTTT
T ss_pred CCEEEEecCCC------EEEEEEchhceEeeeec----CCCCcEEEEEECCCCCCEEEEEeCC------CeEEEEEeecC
Confidence 57888887543 57888888765432211 011112222222 45577777752 34899999887
Q ss_pred cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 174 LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 174 ~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+-...-.. .........++.+. .++..++.|+.+. .+.++|....
T Consensus 149 ~~~~~~~~--~~~~~~~v~~~~~~--~~~~~l~~~~~dg------~i~i~d~~~~ 193 (366)
T 3k26_A 149 TLVAIFGG--VEGHRDEVLSADYD--LLGEKIMSCGMDH------SLKLWRINSK 193 (366)
T ss_dssp EEEEEECS--TTSCSSCEEEEEEC--TTSSEEEEEETTS------CEEEEESCSH
T ss_pred eEEEEecc--cccccCceeEEEEC--CCCCEEEEecCCC------CEEEEECCCC
Confidence 54433210 01111112223332 3566777777654 3677776653
No 139
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=67.95 E-value=80 Score=29.56 Aligned_cols=144 Identities=13% Similarity=0.095 Sum_probs=67.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--C--CEEEEEeCCCCCCCccceE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--K--NKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~--~~IyV~GG~~~~~~~~ndv 114 (473)
++.+++.|+.+ ..+.+||..+..|+.+....... ..-.++.+ + +..++.|+.++. +
T Consensus 164 ~~~~l~s~s~D-----------~~i~iW~~~~~~~~~~~~~~~h~---~~v~~~~~~~~~~~~~l~s~s~D~~------v 223 (330)
T 2hes_X 164 SEALLASSSYD-----------DTVRIWKDYDDDWECVAVLNGHE---GTVWSSDFDKTEGVFRLCSGSDDST------V 223 (330)
T ss_dssp SSSEEEEEETT-----------SCEEEEEEETTEEEEEEEECCCS---SCEEEEEECCSSSSCEEEEEETTSC------E
T ss_pred CCCEEEEEcCC-----------CeEEEEECCCCCeeEEEEccCCC---CcEEEEEecCCCCeeEEEEEeCCCe------E
Confidence 45677777742 34777787777776654431111 11112222 2 446667775533 4
Q ss_pred EEEECCC------CCEEEeeCCCCCCC--CcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCC
Q 011998 115 HILDTDT------LTWKELNTSGMVLS--PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPS 186 (473)
Q Consensus 115 ~~yD~~t------~~W~~l~~~g~~p~--~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~ 186 (473)
.+||..+ ..|..... ++. ...-.+++...+.+++.||.+ ..+.+||..+..|+.+..... ..
T Consensus 224 ~iw~~~~~~~~~~~~~~~~~~---~~~~h~~~v~~v~~s~~~~l~s~~~d------g~v~iw~~~~~~~~~~~~~~~-~h 293 (330)
T 2hes_X 224 RVWKYMGDDEDDQQEWVCEAI---LPDVHKRQVYNVAWGFNGLIASVGAD------GVLAVYEEVDGEWKVFAKRAL-CH 293 (330)
T ss_dssp EEEEEEEECTTSCEEEEEEEE---CCSCCSSCEEEEEECTTSCEEEEETT------SCEEEEEEETTEEEEEEEESC-TT
T ss_pred EEEEecCCCccccceeEEeee---cccccccceEEEEEcCCCEEEEEeCC------CEEEEEEcCCCceEEEecccc-cc
Confidence 4444332 23554443 221 122223333344466666652 247888888888876643211 11
Q ss_pred CcceeeEEEeccccCCEEEEEcccCC
Q 011998 187 ARFSVAGDCLDPLKGGVLVFIGGCNK 212 (473)
Q Consensus 187 ~R~~~~a~~~~~~~~~~l~v~GG~~~ 212 (473)
..+...++...+..++.+++.||.+.
T Consensus 294 ~~~~v~~v~~~~~~~~~~las~s~Dg 319 (330)
T 2hes_X 294 GVYEINVVKWLELNGKTILATGGDDG 319 (330)
T ss_dssp TTSCEEEEEEC-----CCEEEEETTS
T ss_pred ccceEEEEEEecCCCceEEEEecCCC
Confidence 11112222222111456777777665
No 140
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=67.20 E-value=89 Score=29.80 Aligned_cols=107 Identities=13% Similarity=0.077 Sum_probs=53.6
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--C-CEEEEEecccCCCCccccEEEEeCC
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--G-KNLFVFGGFTDSQNLYDDLYMIDVD 171 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~-~~LyV~GG~~~~~~~~ndv~~yd~~ 171 (473)
+++.++.|+.++ .+.+||+.+.+-...- ......-.++.+ + ..+++.|+.+ ..+.+||+.
T Consensus 138 dg~~l~sgs~d~------~i~iwd~~~~~~~~~~-----~~h~~~V~~~~~~~~~~~~l~s~s~D------~~v~iwd~~ 200 (344)
T 4gqb_B 138 SGTQAVSGSKDI------CIKVWDLAQQVVLSSY-----RAHAAQVTCVAASPHKDSVFLSCSED------NRILLWDTR 200 (344)
T ss_dssp TSSEEEEEETTS------CEEEEETTTTEEEEEE-----CCCSSCEEEEEECSSCTTEEEEEETT------SCEEEEETT
T ss_pred CCCEEEEEeCCC------eEEEEECCCCcEEEEE-----cCcCCceEEEEecCCCCCceeeeccc------ccccccccc
Confidence 677788887654 4788898877543221 111111122222 2 3477777752 248889988
Q ss_pred CCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 172 SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 172 t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+.+-...-.. ........++...+ .++++++.|+.+. .+.++|....
T Consensus 201 ~~~~~~~~~~---~~~~~~~~~~~~~p-~~~~~l~sg~~dg------~v~~wd~~~~ 247 (344)
T 4gqb_B 201 CPKPASQIGC---SAPGYLPTSLAWHP-QQSEVFVFGDENG------TVSLVDTKST 247 (344)
T ss_dssp SSSCEEECC-------CCCEEEEEECS-SCTTEEEEEETTS------EEEEEESCC-
T ss_pred ccceeeeeec---ceeeccceeeeecC-CCCcceEEeccCC------cEEEEECCCC
Confidence 7654322110 11111122222211 2566777777654 3566676543
No 141
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=66.96 E-value=96 Score=30.08 Aligned_cols=95 Identities=13% Similarity=0.197 Sum_probs=55.4
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
+.|++||..+.+..++... ......-+++.+ ++.+++.|+.++ .+.+||..+.+-..... ....
T Consensus 125 ~tV~lWd~~tg~~~~~~~~---~~~~~~V~sv~fspdg~~lasgs~Dg------~v~iWd~~~~~~~~~~~-----~h~~ 190 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQM---EQPGEYISSVAWIKEGNYLAVGTSSA------EVQLWDVQQQKRLRNMT-----SHSA 190 (420)
T ss_dssp TEEEEEETTTCCEEEEEEC---CSTTCCEEEEEECTTSSEEEEEETTS------CEEEEETTTTEEEEEEC-----CCSS
T ss_pred CEEEEEECCCCCEEEEEEe---cCCCCcEEEEEECCCCCEEEEEECCC------eEEEEEcCCCcEEEEEe-----CCCC
Confidence 4699999999887665433 112222334444 677888887654 47889988876433321 1122
Q ss_pred eeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 139 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 139 ~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
...+...++.+++.|+.. ..++.+|......
T Consensus 191 ~v~~~s~~~~~l~sgs~d------~~i~~~d~~~~~~ 221 (420)
T 4gga_A 191 RVGSLSWNSYILSSGSRS------GHIHHHDVRVAEH 221 (420)
T ss_dssp CEEEEEEETTEEEEEETT------SEEEEEETTSSSC
T ss_pred ceEEEeeCCCEEEEEeCC------CceeEeeecccce
Confidence 233444566677777652 2467777765543
No 142
>1qhu_A Protein (hemopexin); beta propeller, HAEM binding and transport, iron metabolism, binding protein; HET: HEM; 2.30A {Oryctolagus cuniculus} SCOP: b.66.1.1 b.66.1.1 PDB: 1qjs_A*
Probab=66.63 E-value=45 Score=34.22 Aligned_cols=132 Identities=17% Similarity=0.121 Sum_probs=71.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe------------
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV------------ 72 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~------------ 72 (473)
+..|+||..+++.....- +.+| . --+|....+++|+|=| +..|+||..+.+
T Consensus 167 ~~yw~yd~~~~~~~~~~w-~gi~--~-iDAA~~~~g~~YfFkG-------------~~y~rfd~~~~~v~~gyPk~is~~ 229 (460)
T 1qhu_A 167 NRKWFWDLTTGTKKERSW-PAVG--N-CTSALRWLGRYYCFQG-------------NQFLRFNPVSGEVPPGYPLDVRDY 229 (460)
T ss_dssp TEEEEEETTTTEEEEECC-TTSC--C-CSEEEEETTEEEEEET-------------TEEEEECTTTCCCCTTCCEEHHHH
T ss_pred ccEEEEecccceeecccC-CCCC--c-cchheeeCCceEEEEC-------------CEEEEEcCccCcccCCCCcchhhc
Confidence 357899988876654321 1222 2 3455556799999998 357888876543
Q ss_pred EEEeecCCC---------------CCCCc-eeeEEEE-ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC---CCC
Q 011998 73 WKRATTSGN---------------PPSAR-DSHTCSS-WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT---SGM 132 (473)
Q Consensus 73 W~~l~~~g~---------------~P~~R-~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~---~g~ 132 (473)
|-.++..+. ...+. .-.+++. .++++|+|-| +..|++|.....+..... -..
T Consensus 230 w~~c~~~g~~~~~~~st~~~~~p~~C~p~~~~DAi~~~~~G~tYFFKg--------~~yWR~~~~~~~~~p~~Is~~Wpg 301 (460)
T 1qhu_A 230 FLSCPGRGHRSSHRNSTQHGHESTRCDPDLVLSAMVSDNHGATYVFSG--------SHYWRLDTNRDGWHSWPIAHQWPQ 301 (460)
T ss_dssp TSCCTTCCSCC-------CCCTTTTTCTTCCCCEEEECTTCCEEEEET--------TEEEECTTGGGCCCCEEGGGTCTT
T ss_pred ccCCCCCCCccccccCCccccccccccCCCCcCEEEecCCCeEEEEeC--------CEEEEEecCCCCcCccchhhhccC
Confidence 111111000 00111 1233333 3689999877 345666654433221111 112
Q ss_pred CCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCC
Q 011998 133 VLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD 171 (473)
Q Consensus 133 ~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~ 171 (473)
+|. .--++...++++|+|=|. .+|+|+..
T Consensus 302 lP~--~IDAAf~~~~~~yfFkG~--------~yw~f~~~ 330 (460)
T 1qhu_A 302 GPS--TVDAAFSWEDKLYLIQDT--------KVYVFLTK 330 (460)
T ss_dssp SCS--SCSEEEEETTEEEEEETT--------EEEEEECS
T ss_pred CCC--CCcEEEEECCeEEEEeCC--------EEEEEeCC
Confidence 333 234455567899999764 37888754
No 143
>1pby_B Quinohemoprotein amine dehydrogenase 40 kDa subunit; oxidoreductase; HET: TRW HEM; 1.70A {Paracoccus denitrificans} SCOP: b.69.2.2 PDB: 1jju_B*
Probab=66.56 E-value=78 Score=28.89 Aligned_cols=143 Identities=9% Similarity=0.011 Sum_probs=70.1
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEEEECCCCCEEE-eeCCCCCCC--
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKE-LNTSGMVLS-- 135 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~-l~~~g~~p~-- 135 (473)
..+++||+.+.+.......+.... + -+.++.. + ..+|+.+.. -..+++||+.+.+-.. +.. +. +.
T Consensus 11 ~~v~~~d~~~~~~~~~~~~~~~~~-~-~~~~~~s~dg~~l~v~~~~------~~~v~~~d~~~~~~~~~~~~-~~-~~~~ 80 (337)
T 1pby_B 11 DKLVVIDTEKMAVDKVITIADAGP-T-PMVPMVAPGGRIAYATVNK------SESLVKIDLVTGETLGRIDL-ST-PEER 80 (337)
T ss_dssp TEEEEEETTTTEEEEEEECTTCTT-C-CCCEEECTTSSEEEEEETT------TTEEEEEETTTCCEEEEEEC-CB-TTEE
T ss_pred CeEEEEECCCCcEEEEEEcCCCCC-C-ccceEEcCCCCEEEEEeCC------CCeEEEEECCCCCeEeeEEc-CC-cccc
Confidence 478999999886544332221000 1 1223322 4 477777643 2569999998887543 322 10 00
Q ss_pred CcceeEEEEE-CC-EEEEEeccc--CCCC---ccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEc
Q 011998 136 PRAGHSTVAF-GK-NLFVFGGFT--DSQN---LYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 136 ~R~~hs~~~~-~~-~LyV~GG~~--~~~~---~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~G 208 (473)
...-+.++.. ++ .||+..... .... ..+.+++||+.+.+.......+..| .... +.+ .+..||+.+
T Consensus 81 ~~~~~~~~~s~dg~~l~~~~~~~~~~~~~~~~~~~~i~v~d~~~~~~~~~~~~~~~~-----~~~~-~s~-dg~~l~~~~ 153 (337)
T 1pby_B 81 VKSLFGAALSPDGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEAPRQI-----TMLA-WAR-DGSKLYGLG 153 (337)
T ss_dssp EECTTCEEECTTSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEECCSSC-----CCEE-ECT-TSSCEEEES
T ss_pred cccccceEECCCCCEEEEEecccccccccccccCceEEEEECCCCcEEEEEeCCCCc-----ceeE-ECC-CCCEEEEeC
Confidence 0011222332 33 566654210 0011 2367999999887655443322211 1222 221 234466551
Q ss_pred ccCCCCCccCcEEEEEccccc
Q 011998 209 GCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 209 G~~~~~~~~~dv~~ld~~~~~ 229 (473)
++++.+|....+
T Consensus 154 ---------~~i~~~d~~~~~ 165 (337)
T 1pby_B 154 ---------RDLHVMDPEAGT 165 (337)
T ss_dssp ---------SSEEEEETTTTE
T ss_pred ---------CeEEEEECCCCc
Confidence 468888887654
No 144
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=66.10 E-value=91 Score=33.16 Aligned_cols=124 Identities=11% Similarity=0.139 Sum_probs=70.1
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCC-----CCCceeeEEEEECCEEEEEeCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNP-----PSARDSHTCSSWKNKIIVIGGEDG 106 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~-----P~~R~~hs~~~~~~~IyV~GG~~~ 106 (473)
+-++.++.||+.... ..++.+|..+. .|+.-...... .......+.++.+++||+...
T Consensus 61 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~--- 125 (668)
T 1kv9_A 61 TPLFHDGVIYTSMSW------------SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL--- 125 (668)
T ss_dssp CCEEETTEEEEEEGG------------GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT---
T ss_pred CCEEECCEEEEECCC------------CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC---
Confidence 445679999998662 46899998776 58754321100 000012234556888887532
Q ss_pred CCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc--EEEE
Q 011998 107 HDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKV 178 (473)
Q Consensus 107 ~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v 178 (473)
-..++.+|..+.+ |+.-.... ........+.++.++.+|+-.+. ........++.||.++++ |+.-
T Consensus 126 ----dg~l~alD~~tG~~~W~~~~~~~-~~~~~~~~~P~v~~~~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 126 ----DGRLIALDAKTGKAIWSQQTTDP-AKPYSITGAPRVVKGKVIIGNGG-AEYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ----TSEEEEEETTTCCEEEEEECSCT-TSSCBCCSCCEEETTEEEECCBC-TTTCCBCEEEEEETTTCCEEEEEE
T ss_pred ----CCEEEEEECCCCCEeeeeccCCC-CCcceecCCCEEECCEEEEeCCC-CCcCCCCEEEEEECCCCcEEEEec
Confidence 2568999988775 87643210 00111222335567877764322 111234569999998864 8764
No 145
>3e5z_A Putative gluconolactonase; X-RAY NESG Q9RXN3 gluconolactonase, structural genomics, PSI protein structure initiative; 2.01A {Deinococcus radiodurans}
Probab=65.90 E-value=80 Score=28.80 Aligned_cols=187 Identities=11% Similarity=0.043 Sum_probs=87.7
Q ss_pred CcEEEEECCCCeEEecccCC-CCCCcccceEEEEECCEEEEE----ecCCCCC--CCCCceeeCeEEEEECCCCeEEEee
Q 011998 5 RDLHILDTSSHTWISPSVRG-EGPEAREGHSAALVGKRLFIF----GGCGKSS--NTNDEVYYNDLYILNTETFVWKRAT 77 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~-~~P~~R~~hsa~~~~~~Iyv~----GG~~~~~--~~~~~~~~~dv~~yd~~t~~W~~l~ 77 (473)
..+++||+.+.+...+.... ..+..+....+..-++++|+. |...... ..........+|+||+. .+...+.
T Consensus 90 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~d~~G~l~vtd~~~g~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (296)
T 3e5z_A 90 RRLERQREPGGEWESIADSFEGKKLNSPNDVCLAPDGSLWFSDPTYGIDKPEEGYGGEMELPGRWVFRLAPD-GTLSAPI 168 (296)
T ss_dssp TEEEEECSTTCCEEEEECEETTEECCCCCCEEECTTSCEEEEECSHHHHCGGGSSCCCCCSSSCEEEEECTT-SCEEEEE
T ss_pred CeEEEEcCCCCcEEEEeeccCCCCCCCCCCEEECCCCCEEEECCccccccccccccccccCCCcEEEEECCC-CCEEEee
Confidence 35788888777766542110 111111222233335788886 4321000 00000112479999987 5555543
Q ss_pred cCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECC-CCCE-EEeeC-CCCCCCCcceeEEEEECCEEEEEe
Q 011998 78 TSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTD-TLTW-KELNT-SGMVLSPRAGHSTVAFGKNLFVFG 153 (473)
Q Consensus 78 ~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~-t~~W-~~l~~-~g~~p~~R~~hs~~~~~~~LyV~G 153 (473)
... . .-.+++.. ++++++.... .+.+++||+. +.+. ..... ......|+ ..+.--+++||+..
T Consensus 169 ~~~--~---~~~gi~~s~dg~~lv~~~~------~~~i~~~~~~~~g~~~~~~~~~~~~~~~p~--~i~~d~~G~l~v~~ 235 (296)
T 3e5z_A 169 RDR--V---KPNGLAFLPSGNLLVSDTG------DNATHRYCLNARGETEYQGVHFTVEPGKTD--GLRVDAGGLIWASA 235 (296)
T ss_dssp CCC--S---SEEEEEECTTSCEEEEETT------TTEEEEEEECSSSCEEEEEEEECCSSSCCC--SEEEBTTSCEEEEE
T ss_pred cCC--C---CCccEEECCCCCEEEEeCC------CCeEEEEEECCCCcCcCCCeEeeCCCCCCC--eEEECCCCCEEEEc
Confidence 221 1 11233332 5665554432 3578899876 5555 22211 11111111 11222256788876
Q ss_pred cccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 154 GFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 154 G~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
+ +.+.+||++......+... .. ...+.+..-.++.||+... +.+|+++..+.
T Consensus 236 ~--------~~v~~~~~~g~~~~~~~~~----~~---~~~~~f~~~d~~~L~v~t~--------~~l~~~~~~~~ 287 (296)
T 3e5z_A 236 G--------DGVHVLTPDGDELGRVLTP----QT---TSNLCFGGPEGRTLYMTVS--------TEFWSIETNVR 287 (296)
T ss_dssp T--------TEEEEECTTSCEEEEEECS----SC---CCEEEEESTTSCEEEEEET--------TEEEEEECSCC
T ss_pred C--------CeEEEECCCCCEEEEEECC----CC---ceeEEEECCCCCEEEEEcC--------CeEEEEEcccc
Confidence 1 3589999986555555432 11 1222221112346776532 25888887664
No 146
>1xfd_A DIP, dipeptidyl aminopeptidase-like protein 6, dipeptidylpeptidase 6; DPPX, DPP6, KV4, KV, KAF, membrane protein; HET: NDG NAG BMA MAN; 3.00A {Homo sapiens} SCOP: b.70.3.1 c.69.1.24
Probab=65.73 E-value=1.3e+02 Score=31.36 Aligned_cols=66 Identities=15% Similarity=0.010 Sum_probs=34.4
Q ss_pred ceEEEEECCCCCE-EEeeCCCCCCCCcceeEEEE--ECCEEEEEecccCCCCccccEEEEeCCCCcEEEEe
Q 011998 112 SDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVA--FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 112 ndv~~yD~~t~~W-~~l~~~g~~p~~R~~hs~~~--~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~ 179 (473)
..++++|..+.+- ..+...............+. -+++++++.... ......++++|+.+.+...+.
T Consensus 228 ~~l~~~d~~~~~~~~~l~~~~~~~~~~~~~~~~~~SpDg~~l~~~~~~--~~~~~~i~~~d~~~g~~~~~~ 296 (723)
T 1xfd_A 228 ISLHVIGLNGPTHDLEMMPPDDPRMREYYITMVKWATSTKVAVTWLNR--AQNVSILTLCDATTGVCTKKH 296 (723)
T ss_dssp EEEEEEESSSSCCCEECCCCCCGGGSSEEEEEEEESSSSEEEEEEEET--TSCEEEEEEEETTTCCEEEEE
T ss_pred eEEEEEECCCCceeEEeeCCccCCCccceeEEEEEeCCCeEEEEEEcC--CCCeEEEEEEeCCCCcceEEE
Confidence 3789999988763 44432100000011112222 256655554331 123356999999988776653
No 147
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=65.64 E-value=86 Score=29.08 Aligned_cols=104 Identities=15% Similarity=0.220 Sum_probs=56.3
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCC------------------CCC---CccceEEEE
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGED------------------GHD---YYLSDVHIL 117 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~------------------~~~---~~~ndv~~y 117 (473)
..+|++|+.+.+...+... +. .....+ +++.+++.... +.. .....++++
T Consensus 85 ~~l~~~~~~~g~~~~l~~~---~~----~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~ 157 (347)
T 2gop_A 85 SEIWVADLETLSSKKILEA---KN----IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIF 157 (347)
T ss_dssp EEEEEEETTTTEEEEEEEE---SE----EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEE
T ss_pred ceEEEEECCCCceEEEEcC---CC----ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEE
Confidence 4699999999887776543 21 222233 45434443321 000 013679999
Q ss_pred ECCCCCE-EEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCC--c-cccEEEEeCCCCcEEEEee
Q 011998 118 DTDTLTW-KELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQN--L-YDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 118 D~~t~~W-~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~--~-~ndv~~yd~~t~~W~~v~~ 180 (473)
|+.+.+. ..+.. + .....+...+.+++.+....... . ...+|.+| +..++.+..
T Consensus 158 d~~~~~~~~~l~~----~---~~~~~~~spdg~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~~l~~ 215 (347)
T 2gop_A 158 DTESEEVIEEFEK----P---RFSSGIWHRDKIVVNVPHREIIPQYFKFWDIYIWE--DGKEEKMFE 215 (347)
T ss_dssp ETTTTEEEEEEEE----E---TTCEEEEETTEEEEEEECCCSSCCSSCCEEEEEEE--TTEEEEEEE
T ss_pred ECCCCeEEeeecC----C---CcccccCCCCeEEEEEecccccccccccccEEEeC--CCceEEecc
Confidence 9999887 55542 1 22333344444544443321111 2 45789998 777777654
No 148
>3zwl_B Eukaryotic translation initiation factor 3 subuni; 2.20A {Saccharomyces cerevisiae}
Probab=65.16 E-value=83 Score=29.03 Aligned_cols=108 Identities=11% Similarity=0.070 Sum_probs=52.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE-ECCEEEEEeCCCCCCCc-------
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYY------- 110 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~------- 110 (473)
++.+++.|+.+ ..+.+||..+.+....-.. .. ...+++. -++..+++|+.++....
T Consensus 229 ~~~~l~~~~~d-----------~~i~v~d~~~~~~~~~~~~---~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 292 (369)
T 3zwl_B 229 DLTYFITSSRD-----------TNSFLVDVSTLQVLKKYET---DC--PLNTAVITPLKEFIILGGGQEAKDVTTTSANE 292 (369)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC---SS--CEEEEEECSSSSEEEEEECCC-----------
T ss_pred CCCEEEEecCC-----------ceEEEEECCCCceeeeecC---CC--CceeEEecCCCceEEEeecCCCceEEEEecCC
Confidence 45666677632 3688999988765443321 11 1122222 25566666665442211
Q ss_pred -cceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 111 -LSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 111 -~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
...+.+||..+.+-...-. .....-..+.+ ++++++.|+.+ ..+.+|++++.
T Consensus 293 ~~~~i~~~d~~~~~~~~~~~-----~~~~~v~~~~~s~~~~~l~s~~~d------g~v~iw~~~~~ 347 (369)
T 3zwl_B 293 GKFEARFYHKIFEEEIGRVQ-----GHFGPLNTVAISPQGTSYASGGED------GFIRLHHFEKS 347 (369)
T ss_dssp --CEEEEEETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT------SEEEEEEECHH
T ss_pred CcceeEEEecCCCcchhhee-----cccCcEEEEEECCCCCEEEEEcCC------CeEEEEECccc
Confidence 1267888887765332211 11111222223 45677777752 23677776543
No 149
>3vl1_A 26S proteasome regulatory subunit RPN14; beta-propeller, chaperone, RPT6; 1.60A {Saccharomyces cerevisiae} PDB: 3acp_A
Probab=64.91 E-value=99 Score=29.50 Aligned_cols=94 Identities=13% Similarity=0.094 Sum_probs=46.4
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+.+||..+.+-...- ... ...-.+++.. ++.+++.|+.+ ..+.+||+.+.+-...-.. .
T Consensus 120 ~i~iwd~~~~~~~~~~---~~h-~~~v~~~~~~~~~~~l~s~s~d-----------~~i~iwd~~~~~~~~~~~~---h- 180 (420)
T 3vl1_A 120 DIKVLDSNFNLQREID---QAH-VSEITKLKFFPSGEALISSSQD-----------MQLKIWSVKDGSNPRTLIG---H- 180 (420)
T ss_dssp CEEEECTTSCEEEEET---TSS-SSCEEEEEECTTSSEEEEEETT-----------SEEEEEETTTCCCCEEEEC---C-
T ss_pred CEEEEeCCCcceeeec---ccc-cCccEEEEECCCCCEEEEEeCC-----------CeEEEEeCCCCcCceEEcC---C-
Confidence 4677777665544331 111 1111222222 45666777742 3688999876532211110 0
Q ss_pred CceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCE
Q 011998 85 ARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTW 124 (473)
Q Consensus 85 ~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W 124 (473)
...-.+++.. ++..++.|+.++ .+.+||+.+.+-
T Consensus 181 ~~~v~~~~~~~~~~~l~s~~~d~------~v~iwd~~~~~~ 215 (420)
T 3vl1_A 181 RATVTDIAIIDRGRNVLSASLDG------TIRLWECGTGTT 215 (420)
T ss_dssp SSCEEEEEEETTTTEEEEEETTS------CEEEEETTTTEE
T ss_pred CCcEEEEEEcCCCCEEEEEcCCC------cEEEeECCCCce
Confidence 1111222222 566677777543 477888887653
No 150
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=64.89 E-value=1.1e+02 Score=29.80 Aligned_cols=195 Identities=10% Similarity=0.022 Sum_probs=99.3
Q ss_pred cEEEEECCC--CeEEecccCCCCCCcccceEEEEE---CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCC
Q 011998 6 DLHILDTSS--HTWISPSVRGEGPEAREGHSAALV---GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSG 80 (473)
Q Consensus 6 dv~~yD~~t--~~W~~l~~~~~~P~~R~~hsa~~~---~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g 80 (473)
-+++|+... .+|+.... . +....-++++.. .+.||+.+..+. .-.-|++.+-...+|+++....
T Consensus 32 Gl~~~~~~~~g~~W~~~~~--~-~~~~~v~~i~~dp~~~~~l~~g~~~g~--------~g~gl~~s~D~G~tW~~~~~~~ 100 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGP--V-FLGHTIHHIVQDPREPERMLMAARTGH--------LGPTVFRSDDGGGNWTEATRPP 100 (394)
T ss_dssp EEEEEEECTTSCSEEEEEE--E-STTSEEEEEEECSSSTTCEEEEEEC----------CCEEEEEESSTTSCCEECSBCC
T ss_pred ceEEEECCCCCCCceECCc--c-CCCCceEEEEECCCCCCeEEEEecCCC--------CCccEEEeCCCCCCceECCccc
Confidence 367777655 68987631 1 112223444443 467887654210 0124777777778999886421
Q ss_pred CCC-CC-c-------eeeEEEEE----CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCC------------
Q 011998 81 NPP-SA-R-------DSHTCSSW----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS------------ 135 (473)
Q Consensus 81 ~~P-~~-R-------~~hs~~~~----~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~------------ 135 (473)
..+ .. + .-.+++.. .+.||+.+- ...+++.+-...+|+.+......|.
T Consensus 101 ~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~ 173 (394)
T 3b7f_A 101 AFNKAPEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGT 173 (394)
T ss_dssp CCCCCC----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----
T ss_pred cCCCcccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccccccCC
Confidence 111 11 1 11223332 466776542 2457888777789998853111111
Q ss_pred --CcceeEEEEE---CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCC---CCCCCc----ceeeEEEeccccCCE
Q 011998 136 --PRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTG---EGPSAR----FSVAGDCLDPLKGGV 203 (473)
Q Consensus 136 --~R~~hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g---~~P~~R----~~~~a~~~~~~~~~~ 203 (473)
....++++.. .+.||+.... ..+++.+-...+|+.+.... ..|.+. .......++....+.
T Consensus 174 ~~~~~i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~~~~~~~~~~p~~~~~~g~~~~~i~~~~~~~~~ 246 (394)
T 3b7f_A 174 PDGPKMHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPLNRGCAANFLPDPNVEFGHDPHCVVQHPAAPDI 246 (394)
T ss_dssp CCCCEEEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEECCTTCCCTTSSSSSSSSCBCEEEEEECSSSTTE
T ss_pred CCCCceeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceECCCCccccccCCCccccCcceeEEEECCCCCCE
Confidence 1222344433 2457765332 23777777778999885311 112111 112223333323467
Q ss_pred EEEEcccCCCCCccCcEEEEEccccceeee
Q 011998 204 LVFIGGCNKSLEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 204 l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~ 233 (473)
||+..+ ..+|+.+-....|..+
T Consensus 247 l~vg~~--------~gl~~s~D~G~tW~~~ 268 (394)
T 3b7f_A 247 LYQQNH--------CGIYRMDRREGVWKRI 268 (394)
T ss_dssp EEEEET--------TEEEEEETTTTEEECG
T ss_pred EEEEcC--------CeEEEeCCCCCcceEC
Confidence 777421 3477777777778754
No 151
>2p4o_A Hypothetical protein; putative lactonase, structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2; HET: MSE; 1.90A {Nostoc punctiforme} SCOP: b.68.6.3
Probab=64.52 E-value=91 Score=28.97 Aligned_cols=110 Identities=17% Similarity=0.056 Sum_probs=58.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++++|+..... . ...+++||+.+.+.+.+... +..+.....+.. ++.+|+.-- ....+|++
T Consensus 82 dG~l~vad~~~------~---~~~v~~~d~~~g~~~~~~~~---~~~~~~~g~~~~~~~~~~v~d~------~~g~i~~~ 143 (306)
T 2p4o_A 82 NGDLVATGWNA------D---SIPVVSLVKSDGTVETLLTL---PDAIFLNGITPLSDTQYLTADS------YRGAIWLI 143 (306)
T ss_dssp TSCEEEEEECT------T---SCEEEEEECTTSCEEEEEEC---TTCSCEEEEEESSSSEEEEEET------TTTEEEEE
T ss_pred CCcEEEEeccC------C---cceEEEEcCCCCeEEEEEeC---CCccccCcccccCCCcEEEEEC------CCCeEEEE
Confidence 46788875421 0 02488899888888766543 334554555444 566777532 23579999
Q ss_pred ECCCCCEEE--eeCCC--CCCCCc--ceeEEEEECCEEEEEecccCCCCccccEEEEeCCC
Q 011998 118 DTDTLTWKE--LNTSG--MVLSPR--AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 118 D~~t~~W~~--l~~~g--~~p~~R--~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t 172 (473)
|+.+..-+. ..... ..+... .......-++.||+.-- ..+.+++|++..
T Consensus 144 d~~~~~~~v~~~~~~~~~~~~~~~~~~pngis~dg~~lyv~d~------~~~~I~~~~~~~ 198 (306)
T 2p4o_A 144 DVVQPSGSIWLEHPMLARSNSESVFPAANGLKRFGNFLYVSNT------EKMLLLRIPVDS 198 (306)
T ss_dssp ETTTTEEEEEEECGGGSCSSTTCCSCSEEEEEEETTEEEEEET------TTTEEEEEEBCT
T ss_pred eCCCCcEeEEEECCccccccccCCCCcCCCcCcCCCEEEEEeC------CCCEEEEEEeCC
Confidence 987642211 11100 011111 11122333457887642 235699999874
No 152
>3ei3_B DNA damage-binding protein 2; UV-damage, DDB, nucleotide excision repair, xeroderma pigmentosum, cytoplasm, DNA repair; HET: DNA PG4; 2.30A {Danio rerio} PDB: 3ei1_B* 3ei2_B* 4a08_B* 4a09_B* 4a0a_B* 4a0b_B* 4a0k_D* 4a0l_B*
Probab=64.50 E-value=97 Score=29.27 Aligned_cols=145 Identities=9% Similarity=0.017 Sum_probs=77.0
Q ss_pred EEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEEEE
Q 011998 41 RLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 41 ~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
.+++.|+.+ ..+.+||+.+......... ......-.++.+ ++.+++.|+.+ ..+.+|
T Consensus 87 ~~l~s~~~d-----------g~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~s~~~d------~~i~iw 146 (383)
T 3ei3_B 87 TTVAVGSKG-----------GDIILWDYDVQNKTSFIQG---MGPGDAITGMKFNQFNTNQLFVSSIR------GATTLR 146 (383)
T ss_dssp TEEEEEEBT-----------SCEEEEETTSTTCEEEECC---CSTTCBEEEEEEETTEEEEEEEEETT------TEEEEE
T ss_pred CEEEEEcCC-----------CeEEEEeCCCcccceeeec---CCcCCceeEEEeCCCCCCEEEEEeCC------CEEEEE
Confidence 577777742 3688999988776655332 011122222233 34777777654 357889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|+.+.....+.... .....-.+++.. ++++++.|+.. ..+.+||+....-..+... . ....++.+
T Consensus 147 d~~~~~~~~~~~~~--~~~~~v~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~h----~--~~v~~~~~ 212 (383)
T 3ei3_B 147 DFSGSVIQVFAKTD--SWDYWYCCVDVSVSRQMLATGDST------GRLLLLGLDGHEIFKEKLH----K--AKVTHAEF 212 (383)
T ss_dssp ETTSCEEEEEECCC--CSSCCEEEEEEETTTTEEEEEETT------SEEEEEETTSCEEEEEECS----S--SCEEEEEE
T ss_pred ECCCCceEEEeccC--CCCCCeEEEEECCCCCEEEEECCC------CCEEEEECCCCEEEEeccC----C--CcEEEEEE
Confidence 99887766665311 111112233333 45566777652 3588999865544443321 1 11222333
Q ss_pred ccccCCE-EEEEcccCCCCCccCcEEEEEccc
Q 011998 197 DPLKGGV-LVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 197 ~~~~~~~-l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
. .++. +++.|+.+. .+.++|...
T Consensus 213 ~--~~~~~~l~s~~~d~------~i~iwd~~~ 236 (383)
T 3ei3_B 213 N--PRCDWLMATSSVDA------TVKLWDLRN 236 (383)
T ss_dssp C--SSCTTEEEEEETTS------EEEEEEGGG
T ss_pred C--CCCCCEEEEEeCCC------EEEEEeCCC
Confidence 2 2344 777777654 366677655
No 153
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=63.37 E-value=94 Score=28.72 Aligned_cols=173 Identities=13% Similarity=0.095 Sum_probs=83.9
Q ss_pred CcEEEEECCCC--eEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC-eEEEeecCCC
Q 011998 5 RDLHILDTSSH--TWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~~~g~ 81 (473)
+.+.++|..+. .|+... ... ....+..+..++++|+.+. +.++.||+... .|+.-.
T Consensus 15 ~~v~~~d~~tG~~~w~~~~---~~~-~~~~~~~~~pdG~ilvs~~-------------~~V~~~d~~G~~~W~~~~---- 73 (276)
T 3no2_A 15 NKIAIINKDTKEIVWEYPL---EKG-WECNSVAATKAGEILFSYS-------------KGAKMITRDGRELWNIAA---- 73 (276)
T ss_dssp SEEEEEETTTTEEEEEEEC---CTT-CCCCEEEECTTSCEEEECB-------------SEEEEECTTSCEEEEEEC----
T ss_pred CEEEEEECCCCeEEEEeCC---Ccc-CCCcCeEECCCCCEEEeCC-------------CCEEEECCCCCEEEEEcC----
Confidence 45788998776 466542 110 1223333344678887322 35889998322 465332
Q ss_pred CCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCCC--cceeEEEEECCEEEEEecccC
Q 011998 82 PPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSP--RAGHSTVAFGKNLFVFGGFTD 157 (473)
Q Consensus 82 ~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~~--R~~hs~~~~~~~LyV~GG~~~ 157 (473)
+....-+++... ++.+++....+ ...++.+|+.... |+.-.. ...+.+ .........++.+++....
T Consensus 74 -~~~~~~~~~~~~~dG~~lv~~~~~-----~~~v~~vd~~Gk~l~~~~~~-~~~~~~~~~~~~v~~~~~G~~lv~~~~-- 144 (276)
T 3no2_A 74 -PAGCEMQTARILPDGNALVAWCGH-----PSTILEVNMKGEVLSKTEFE-TGIERPHAQFRQINKNKKGNYLVPLFA-- 144 (276)
T ss_dssp -CTTCEEEEEEECTTSCEEEEEEST-----TEEEEEECTTSCEEEEEEEC-CSCSSGGGSCSCCEECTTSCEEEEETT--
T ss_pred -CCCccccccEECCCCCEEEEecCC-----CCEEEEEeCCCCEEEEEecc-CCCCcccccccCceECCCCCEEEEecC--
Confidence 111233444444 56666654321 2467888875443 432211 111111 1112233345556554432
Q ss_pred CCCccccEEEEeCCCC-cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 158 SQNLYDDLYMIDVDSG-LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 158 ~~~~~ndv~~yd~~t~-~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
...+.+||++.. .|+.-.. ..| +++..+ .++.++|.+..+ .-++.||..+
T Consensus 145 ----~~~v~~~d~~G~~~w~~~~~--~~~-----~~~~~~---~~g~~~v~~~~~------~~v~~~d~~t 195 (276)
T 3no2_A 145 ----TSEVREIAPNGQLLNSVKLS--GTP-----FSSAFL---DNGDCLVACGDA------HCFVQLNLES 195 (276)
T ss_dssp ----TTEEEEECTTSCEEEEEECS--SCC-----CEEEEC---TTSCEEEECBTT------SEEEEECTTT
T ss_pred ----CCEEEEECCCCCEEEEEECC--CCc-----cceeEc---CCCCEEEEeCCC------CeEEEEeCcC
Confidence 235899998732 3553321 111 223333 367777776533 2366777663
No 154
>2ad6_A Methanol dehydrogenase subunit 1; PQQ configuration, native, oxidoredu; HET: PQQ; 1.50A {Methylophilus methylotrophus} SCOP: b.70.1.1 PDB: 2ad7_A* 2ad8_A* 4aah_A* 1g72_A*
Probab=62.91 E-value=57 Score=34.11 Aligned_cols=125 Identities=12% Similarity=0.177 Sum_probs=70.3
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEEC-CCC--eEEEeecCCCCCC--C---ceeeEEEEECCEEEEEeCC
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-ETF--VWKRATTSGNPPS--A---RDSHTCSSWKNKIIVIGGE 104 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~-~t~--~W~~l~~~g~~P~--~---R~~hs~~~~~~~IyV~GG~ 104 (473)
.+.++.++.||+.... ...++.+|. .+. .|+.-........ . ....+.++.+++||+...
T Consensus 56 ~~P~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~- 123 (571)
T 2ad6_A 56 GAPLVIGDMMYVHSAF-----------PNNTYALNLNDPGKIVWQHKPKQDASTKAVMCCDVVDRGLAYGAGQIVKKQA- 123 (571)
T ss_dssp SCCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCTTCSCCCCCEEETTEEEEECT-
T ss_pred cccEEECCEEEEEeCC-----------CCEEEEEeCCCCccEEEEEcCCCCccccccccccccccccEEECCEEEEEeC-
Confidence 3445679999998762 146899998 765 5876432210000 0 112234566889888632
Q ss_pred CCCCCccceEEEEECCCCC--EEEeeCCCCCCCC-cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC--cEEEE
Q 011998 105 DGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG--LWTKV 178 (473)
Q Consensus 105 ~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~-R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~~v 178 (473)
-..++.+|..+.+ |+.-.. ..+.. ....+.++.++.+|+-.+. ........++.||.+++ .|+.-
T Consensus 124 ------dg~l~alD~~tG~~~W~~~~~--~~~~~~~~~~~P~v~~g~v~vg~~~-~~~~~~g~v~a~D~~tG~~~W~~~ 193 (571)
T 2ad6_A 124 ------NGHLLALDAKTGKINWEVEVC--DPKVGSTLTQAPFVAKDTVLMGCSG-AELGVRGAVNAFDLKTGELKWRAF 193 (571)
T ss_dssp ------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEEECBC-GGGTCCCEEEEEETTTCCEEEEEE
T ss_pred ------CCEEEEEECCCCCEEEEecCC--CCCccceeccCCEEECCEEEEEecC-CccCCCCEEEEEECCCCcEEEEEc
Confidence 2568999998775 765422 11111 1112234567877764332 11112356999999876 47654
No 155
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=62.46 E-value=1.6e+02 Score=31.02 Aligned_cols=110 Identities=15% Similarity=0.121 Sum_probs=57.5
Q ss_pred CcEEEEEC-CCC--eEEecccCCC--CCCcc---cceEEEE--ECCE----EEEEecCCCCCCCCCceeeCeEEEEECCC
Q 011998 5 RDLHILDT-SSH--TWISPSVRGE--GPEAR---EGHSAAL--VGKR----LFIFGGCGKSSNTNDEVYYNDLYILNTET 70 (473)
Q Consensus 5 ~dv~~yD~-~t~--~W~~l~~~~~--~P~~R---~~hsa~~--~~~~----Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t 70 (473)
+.|+.||. .+. .|+.-..... .+..+ .....++ .+++ ||+... ...++.+|..|
T Consensus 73 ~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV~v~t~------------dg~l~AlDa~T 140 (599)
T 1w6s_A 73 NNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALILKTQL------------DGNVAALNAET 140 (599)
T ss_dssp TCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEEEEECT------------TSEEEEEETTT
T ss_pred CEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEEEEEcC------------CCEEEEEECCC
Confidence 46899999 765 6886421110 00011 1123344 4666 777543 13689999887
Q ss_pred C--eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEee
Q 011998 71 F--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELN 128 (473)
Q Consensus 71 ~--~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~ 128 (473)
. .|+.-... ..+......+-++.++.+|+-.+.. ....-..++.||..+.+ |+.-.
T Consensus 141 G~~~W~~~~~~-~~~~~~~~ssP~v~~g~V~vg~~g~-e~g~~g~v~A~D~~TG~~~W~~~~ 200 (599)
T 1w6s_A 141 GETVWKVENSD-IKVGSTLTIAPYVVKDKVIIGSSGA-ELGVRGYLTAYDVKTGEQVWRAYA 200 (599)
T ss_dssp CCEEEEEECCC-GGGTCBCCSCCEEETTEEEECCBCG-GGTCCCEEEEEETTTCCEEEEEES
T ss_pred CCEEEeecCCC-CCccceeecCCEEECCEEEEEeccc-ccCCCCeEEEEECCCCcEEEEEcC
Confidence 7 48753211 0000011222345688887643211 11124578999998766 76553
No 156
>1pex_A Collagenase-3, MMP-13; C-terminal hemopexin-like domain of matrix- metalloproteinase, metalloprotease; 2.70A {Homo sapiens} SCOP: b.66.1.1
Probab=62.13 E-value=90 Score=28.09 Aligned_cols=146 Identities=14% Similarity=0.121 Sum_probs=75.5
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec--C-CCCCCCceeeEEEEE--CCEEEEEeCCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT--S-GNPPSARDSHTCSSW--KNKIIVIGGEDGHD 108 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~--~-g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~ 108 (473)
+++.+++.+|+|=|. .+|+++.....+..... . ..+|. .--++... ++++|+|=|
T Consensus 28 Ai~~~~g~~y~Fkg~-------------~~wr~~~~~~~~~p~~I~~~wp~Lp~--~iDAa~~~~~~~~iyfFkG----- 87 (207)
T 1pex_A 28 AITSLRGETMIFKDR-------------FFWRLHPQQVDAELFLTKSFWPELPN--RIDAAYEHPSHDLIFIFRG----- 87 (207)
T ss_dssp EEEEETTEEEEEETT-------------EEEEECSSSSCCEEEEHHHHCTTSCS--SCCEEEEETTTTEEEEEET-----
T ss_pred EEEeCCCcEEEEECC-------------EEEEEeCCCcCCCceehhHhccCCCC--CccEEEEeccCCcEEEEcc-----
Confidence 455679999999883 57888765444322111 0 11232 22233333 589999977
Q ss_pred CccceEEEEECCCCCE---EEeeCCCCCCCC-cceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeC-
Q 011998 109 YYLSDVHILDTDTLTW---KELNTSGMVLSP-RAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITT- 181 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~W---~~l~~~g~~p~~-R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~- 181 (473)
+.+|+|+-.+..- +.+...| +|.. ..--++... ++++|+|-|. ..|+||..+++ +...
T Consensus 88 ---~~~w~~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~gk~yfFkG~--------~ywr~d~~~~~---~d~gy 152 (207)
T 1pex_A 88 ---RKFWALNGYDILEGYPKKISELG-LPKEVKKISAAVHFEDTGKTLLFSGN--------QVWRYDDTNHI---MDKDY 152 (207)
T ss_dssp ---TEEEEESTTCCCTTCSEESTTTT-CCTTCCCCCEEEECTTTSEEEEEETT--------EEEEEETTTTE---ECSSC
T ss_pred ---CEEEEEeCCeeccCCceeccccC-CCCCCccccEEEEeCCCCEEEEEeCC--------EEEEEeCcCcc---ccCCC
Confidence 4567776432211 1222111 2221 122233333 3789999774 48999987642 2210
Q ss_pred --------CCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 182 --------GEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 182 --------g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
...| .+ -.++.. .++.+|+|-| +..|.|+....
T Consensus 153 Pr~i~~~~~Gip-~~-iDaAf~----~~g~~YfFkg--------~~y~rf~~~~~ 193 (207)
T 1pex_A 153 PRLIEEDFPGIG-DK-VDAVYE----KNGYIYFFNG--------PIQFEYSIWSN 193 (207)
T ss_dssp CCBHHHHSTTSC-SC-CSEEEE----ETTEEEEEET--------TEEEEEETTTT
T ss_pred CccHHHcCCCCC-CC-ccEEEE----cCCcEEEEEC--------CEEEEEeCCcc
Confidence 0112 12 223333 2688888855 34677887654
No 157
>3scy_A Hypothetical bacterial 6-phosphogluconolactonase; 7-bladed beta-propeller, structural genomics, joint center F structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides fragilis} PDB: 3fgb_A
Probab=61.83 E-value=51 Score=31.12 Aligned_cols=97 Identities=10% Similarity=-0.027 Sum_probs=46.3
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEECC-EEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCC-Ccce
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKN-KIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS-PRAG 139 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~-~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~-~R~~ 139 (473)
.+|.+|..+.+++.+... ....| .+-+..-++ .||+.+...... -.-.+|.++..+.+.+.+.. .+. ...-
T Consensus 30 ~~~~~d~~~g~~~~~~~~-~~~~p--~~l~~spdg~~l~~~~~~~~~~-~~v~~~~~~~~~g~~~~~~~---~~~~~~~p 102 (361)
T 3scy_A 30 YTFRFNEETGESLPLSDA-EVANP--SYLIPSADGKFVYSVNEFSKDQ-AAVSAFAFDKEKGTLHLLNT---QKTMGADP 102 (361)
T ss_dssp EEEEEETTTCCEEEEEEE-ECSCC--CSEEECTTSSEEEEEECCSSTT-CEEEEEEEETTTTEEEEEEE---EECSSSCE
T ss_pred EEEEEeCCCCCEEEeecc-cCCCC--ceEEECCCCCEEEEEEccCCCC-CcEEEEEEeCCCCcEEEeeE---eccCCCCc
Confidence 356668888888776543 11111 122222234 566665432111 12234666666677776653 221 1112
Q ss_pred eEEEEECCE-EEEEecccCCCCccccEEEEeCCC
Q 011998 140 HSTVAFGKN-LFVFGGFTDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 140 hs~~~~~~~-LyV~GG~~~~~~~~ndv~~yd~~t 172 (473)
+..+. +++ ||+.... ...+.+|++..
T Consensus 103 ~~~~~-dg~~l~~~~~~------~~~v~~~~~~~ 129 (361)
T 3scy_A 103 CYLTT-NGKNIVTANYS------GGSITVFPIGQ 129 (361)
T ss_dssp EEEEE-CSSEEEEEETT------TTEEEEEEBCT
T ss_pred EEEEE-CCCEEEEEECC------CCEEEEEEeCC
Confidence 22223 554 6655432 13477888764
No 158
>1itv_A MMP9; adaptive molecular recognition, beta propeller, dimer, hydrolase; 1.95A {Homo sapiens} SCOP: b.66.1.1
Probab=61.67 E-value=86 Score=27.87 Aligned_cols=149 Identities=12% Similarity=0.120 Sum_probs=75.9
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCC--CeEEEeecC---CCCCCCceeeEEEEE--CCEEEEEeCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTS---GNPPSARDSHTCSSW--KNKIIVIGGEDG 106 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~---g~~P~~R~~hs~~~~--~~~IyV~GG~~~ 106 (473)
+++.+++.+|+|=| +.+|+++... ......... ..+|. .--++... ++++|+|-|
T Consensus 11 Ai~~~~g~~yfFkg-------------~~~Wr~~~~~~~~~~~p~~Is~~w~glP~--~IDAa~~~~~~~~~yfFkG--- 72 (195)
T 1itv_A 11 AIAEIGNQLYLFKD-------------GKYWRFSEGRGSRPQGPFLIADKWPALPR--KLDSVFEEPLSKKLFFFSG--- 72 (195)
T ss_dssp EEEEETTEEEEEET-------------TEEEEECCSSSCCCEEEEEHHHHCTTSCS--SCSEEEECTTTCCEEEEET---
T ss_pred EEEEeCCEEEEEEC-------------CEEEEEECCccccCCCcEEhhhccCCCCC--CccEEEEECCCCeEEEEeC---
Confidence 45567999999988 3578887654 222211110 12232 22233333 688999977
Q ss_pred CCCccceEEEEECCCCCE-EEeeCCCCCCCC--cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEE-----EE
Q 011998 107 HDYYLSDVHILDTDTLTW-KELNTSGMVLSP--RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT-----KV 178 (473)
Q Consensus 107 ~~~~~ndv~~yD~~t~~W-~~l~~~g~~p~~--R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~-----~v 178 (473)
+..|+|+..+..- +.+..-| +|.. .-..+....++++|+|-|. ..|+||..+++=. .+
T Consensus 73 -----~~yw~~~~~~~~~Pk~i~~~G-~p~~~~~iDAA~~~~~g~~yfFkg~--------~ywr~d~~~~~~~~gyPr~i 138 (195)
T 1itv_A 73 -----RQVWVYTGASVLGPRRLDKLG-LGADVAQVTGALRSGRGKMLLFSGR--------RLWRFDVKAQMVDPRSASEV 138 (195)
T ss_dssp -----TEEEEEETTEEEEEEEGGGGT-CCTTCCCCCEEEECSTTEEEEEETT--------EEEEEETTTTEECGGGCEEH
T ss_pred -----CEEEEEcCCccCCCEEeeecc-cCCCccceeEEEEcCCCeEEEEeCC--------EEEEEeCCcccccCCCccCh
Confidence 5678887543211 0111111 2321 1222222235789999773 3799998764210 11
Q ss_pred eeC-CCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 179 ITT-GEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 179 ~~~-g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
... ...| ..-.++... .+.+|+|-| +..|.|+....
T Consensus 139 ~~~w~Gvp--~~idaa~~~----~g~~Yffkg--------~~y~~~~~~~~ 175 (195)
T 1itv_A 139 DRMFPGVP--LDTHDVFQF----REKAYFCQD--------RFYWRVSSRSE 175 (195)
T ss_dssp HHHSTTSC--SSCSEEEEE----TTEEEEEET--------TEEEEEECCTT
T ss_pred hhcCCCCC--CCCCEEEEe----CCeEEEEeC--------CEEEEEECCcc
Confidence 100 0112 122344433 488888865 24677876654
No 159
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=61.58 E-value=1.2e+02 Score=29.45 Aligned_cols=135 Identities=15% Similarity=0.139 Sum_probs=71.9
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+.+||..+.+-...- ...... -.+++.. ++..++.|+.+ ..+.+||+.+.+-...-.
T Consensus 290 ~~i~vwd~~~~~~~~~~---~~~~~~-v~~~~~~~~~~~l~sg~~d-----------g~i~vwd~~~~~~~~~~~----- 349 (464)
T 3v7d_B 290 NTLIVWDVAQMKCLYIL---SGHTDR-IYSTIYDHERKRCISASMD-----------TTIRIWDLENGELMYTLQ----- 349 (464)
T ss_dssp SCEEEEETTTTEEEEEE---CCCSSC-EEEEEEETTTTEEEEEETT-----------SCEEEEETTTTEEEEEEC-----
T ss_pred CeEEEEECCCCcEEEEe---cCCCCC-EEEEEEcCCCCEEEEEeCC-----------CcEEEEECCCCcEEEEEe-----
Confidence 35777887766544321 111111 1223333 45566677642 358899998875432211
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYD 163 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~n 163 (473)
.....-.+..+.+..++.|+.++ .+.+||+.+..-..... ........+...++.+++.|+ + +
T Consensus 350 ~h~~~v~~~~~~~~~l~s~s~dg------~v~vwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~--d-----g 412 (464)
T 3v7d_B 350 GHTALVGLLRLSDKFLVSAAADG------SIRGWDANDYSRKFSYH----HTNLSAITTFYVSDNILVSGS--E-----N 412 (464)
T ss_dssp CCSSCEEEEEECSSEEEEEETTS------EEEEEETTTCCEEEEEE----CTTCCCEEEEEECSSEEEEEE--T-----T
T ss_pred CCCCcEEEEEEcCCEEEEEeCCC------cEEEEECCCCceeeeec----CCCCccEEEEEeCCCEEEEec--C-----C
Confidence 11122334445667777777543 47889988765332221 112222334445666666665 2 3
Q ss_pred cEEEEeCCCCcEE
Q 011998 164 DLYMIDVDSGLWT 176 (473)
Q Consensus 164 dv~~yd~~t~~W~ 176 (473)
.+.+||+.+++-.
T Consensus 413 ~i~iwd~~~g~~~ 425 (464)
T 3v7d_B 413 QFNIYNLRSGKLV 425 (464)
T ss_dssp EEEEEETTTCCEE
T ss_pred eEEEEECCCCcEE
Confidence 5899999887643
No 160
>4aow_A Guanine nucleotide-binding protein subunit beta-2; receptor, WD-repeat, beta-propeller; 2.45A {Homo sapiens} PDB: 2zkq_a
Probab=61.52 E-value=87 Score=28.64 Aligned_cols=136 Identities=9% Similarity=0.081 Sum_probs=62.0
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+.+||..+.+....-. ..... -.+++.. ++.+++.|+.+ ..+.+||+.+..-.......
T Consensus 196 ~i~i~d~~~~~~~~~~~---~h~~~-v~~~~~s~~~~~l~s~s~D-----------g~i~iwd~~~~~~~~~~~~~---- 256 (340)
T 4aow_A 196 LVKVWNLANCKLKTNHI---GHTGY-LNTVTVSPDGSLCASGGKD-----------GQAMLWDLNEGKHLYTLDGG---- 256 (340)
T ss_dssp CEEEEETTTTEEEEEEC---CCSSC-EEEEEECTTSSEEEEEETT-----------CEEEEEETTTTEEEEEEECS----
T ss_pred EEEEEECCCCceeeEec---CCCCc-EEEEEECCCCCEEEEEeCC-----------CeEEEEEeccCceeeeecCC----
Confidence 36677777665543211 11111 1122222 46677777742 35788898876543322211
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCccee----EEEEE--CCEEEEEecccCC
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGH----STVAF--GKNLFVFGGFTDS 158 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~h----s~~~~--~~~LyV~GG~~~~ 158 (473)
..-.+++...+..++.|+.+ ..+.+||..+..-...-...........| .++.+ ++++++.||.+
T Consensus 257 -~~v~~~~~~~~~~~~~~~~d------~~i~iwd~~~~~~~~~~~~~~~~~~~~~h~~~v~~l~~s~dg~~l~sgs~D-- 327 (340)
T 4aow_A 257 -DIINALCFSPNRYWLCAATG------PSIKIWDLEGKIIVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTD-- 327 (340)
T ss_dssp -SCEEEEEECSSSSEEEEEET------TEEEEEETTTTEEEEEECCC-------CCCCCEEEEEECTTSSEEEEEETT--
T ss_pred -ceEEeeecCCCCceeeccCC------CEEEEEECCCCeEEEeccccceeeeccCCCCCEEEEEECCCCCEEEEEeCC--
Confidence 11122223344445555533 35778888776533221110111111111 12222 45566777752
Q ss_pred CCccccEEEEeCCCC
Q 011998 159 QNLYDDLYMIDVDSG 173 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~ 173 (473)
..|.+||++++
T Consensus 328 ----g~v~iW~~~tG 338 (340)
T 4aow_A 328 ----NLVRVWQVTIG 338 (340)
T ss_dssp ----SCEEEEEEEC-
T ss_pred ----CEEEEEeCCCc
Confidence 23778887765
No 161
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=61.37 E-value=89 Score=28.34 Aligned_cols=105 Identities=17% Similarity=0.324 Sum_probs=57.5
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe--E-EEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccce
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--W-KRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSD 113 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W-~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~nd 113 (473)
++++|+|=| +..|+|+..+.. + +.|...|-+.....-.++..+ ++++|+|-| +.
T Consensus 87 ~~k~yfFkG-------------~~yW~y~~~~~~~gyPk~I~~~g~p~~~~~IDAAf~~~~~g~~YfFkG--------~~ 145 (218)
T 1gen_A 87 EEKAVFFAG-------------NEYWIYSASTLERGYPKPLTSLGLPPDVQRVDAAFNWSKNKKTYIFAG--------DK 145 (218)
T ss_dssp TTEEEEEET-------------TEEEEEETTEECTTCSEEGGGGTCCTTCCCCSEEEEETTTTEEEEEET--------TE
T ss_pred CCEEEEEeC-------------CEEEEEcCccccCCCCccHhhcCCCCCcCCccEEEEEcCCCeEEEEEC--------CE
Confidence 589999988 368999852100 0 112111211111223344443 689999977 56
Q ss_pred EEEEECCCCCEEE-----eeCCCCCCCCcceeEEEEEC--CEEEEEecccCCCCccccEEEEeCCCC
Q 011998 114 VHILDTDTLTWKE-----LNTSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 114 v~~yD~~t~~W~~-----l~~~g~~p~~R~~hs~~~~~--~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
.|+||..+++-.. +.. .-+..|..-.++.... +++|+|-|. ..|+||..+.
T Consensus 146 ywr~d~~~~~v~~gyPr~i~~-~w~g~p~~idaAf~~~~~g~~YfFkg~--------~y~~~~~~~~ 203 (218)
T 1gen_A 146 FWRYNEVKKKMDPGFPKLIAD-AWNAIPDNLDAVVDLQGGGHSYFFKGA--------YYLKLENQSL 203 (218)
T ss_dssp EEEEETTTTEECSSCCEEHHH-HSSSCCSSCSEEEECTTTCEEEEEETT--------EEEEEETTEE
T ss_pred EEEEECccccccCCCCcchhh-ccCCCCCCCCEEEEEcCCCcEEEEECC--------EEEEEECCce
Confidence 8999987764211 110 0012233334555554 789999774 3788887544
No 162
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=61.30 E-value=1.5e+02 Score=30.37 Aligned_cols=163 Identities=10% Similarity=0.013 Sum_probs=73.2
Q ss_pred CcEEEEECCCC----eEEecccCCCC----CCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEe
Q 011998 5 RDLHILDTSSH----TWISPSVRGEG----PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRA 76 (473)
Q Consensus 5 ~dv~~yD~~t~----~W~~l~~~~~~----P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l 76 (473)
+.++++|..++ +-.+.-...+. ...|-.+..+.-++ |||----+. ....-..+.++|.+|++-..-
T Consensus 106 ~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~Ph~~~~~pdG-i~Vs~~g~~-----~g~~~g~v~vlD~~T~~v~~~ 179 (462)
T 2ece_A 106 SRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSRLHTVHCGPDA-IYISALGNE-----EGEGPGGILMLDHYSFEPLGK 179 (462)
T ss_dssp CCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEEEEEEEECSSC-EEEEEEEET-----TSCSCCEEEEECTTTCCEEEE
T ss_pred CeEEEEECCCCCCCceeeeeechhhcccccCCCcccceeECCCe-EEEEcCCCc-----CCCCCCeEEEEECCCCeEEEE
Confidence 56899998766 33332100001 11232333344445 777422111 111236799999998753322
Q ss_pred ecCCCCCCCceeeEEEE-EC-CEEEEEe---------CCCCCC---CccceEEEEECCCCCEEEeeCCCCCCCCc--ce-
Q 011998 77 TTSGNPPSARDSHTCSS-WK-NKIIVIG---------GEDGHD---YYLSDVHILDTDTLTWKELNTSGMVLSPR--AG- 139 (473)
Q Consensus 77 ~~~g~~P~~R~~hs~~~-~~-~~IyV~G---------G~~~~~---~~~ndv~~yD~~t~~W~~l~~~g~~p~~R--~~- 139 (473)
-..+..|.. +.+.... -+ +.+|+-- |+.... .+.+.+.+||+.+.+- +.. .+.+. ..
T Consensus 180 ~~~~~~~~~-~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~k~--~~t---I~vg~~g~~P 253 (462)
T 2ece_A 180 WEIDRGDQY-LAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKRKR--IHS---LTLGEENRMA 253 (462)
T ss_dssp CCSBCTTCC-CCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTTEE--EEE---EESCTTEEEE
T ss_pred EccCCCCcc-ccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCCcE--eeE---EecCCCCCcc
Confidence 222212211 2222222 23 4444431 222221 3468899999987632 222 12211 11
Q ss_pred -eEEEEE---CCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 140 -HSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 140 -hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
|....+ +..+||..-. +.....+.+++|....+.|+.+..
T Consensus 254 ~~i~f~~~Pdg~~aYV~~e~-~~~~Lss~V~v~~~d~g~~~~~~v 297 (462)
T 2ece_A 254 LELRPLHDPTKLMGFINMVV-SLKDLSSSIWLWFYEDGKWNAEKV 297 (462)
T ss_dssp EEEEECSSTTCCEEEEEEEE-ETTTCCEEEEEEEEETTEEEEEEE
T ss_pred ceeEeeECCCCCEEEEEEee-eccCCCceEEEEEecCCceeEEEE
Confidence 111112 2346665442 111234567666655688876663
No 163
>1kv9_A Type II quinohemoprotein alcohol dehydrogenase; electron transfer, oxidoreductase; HET: PQQ HEM EPE; 1.90A {Pseudomonas putida} SCOP: a.3.1.6 b.70.1.1
Probab=60.78 E-value=1.7e+02 Score=30.94 Aligned_cols=109 Identities=19% Similarity=0.185 Sum_probs=59.9
Q ss_pred CcEEEEECCCC--eEEecccCCCC-----CCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEE
Q 011998 5 RDLHILDTSSH--TWISPSVRGEG-----PEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKR 75 (473)
Q Consensus 5 ~dv~~yD~~t~--~W~~l~~~~~~-----P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~ 75 (473)
+.|+.+|..|. .|+.-...... .......+.++.+++||+... ...++.+|..|. .|+.
T Consensus 76 ~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~------------dg~l~alD~~tG~~~W~~ 143 (668)
T 1kv9_A 76 SRVIAVDAASGKELWRYDPEVAKVKARTSCCDAVNRGVALWGDKVYVGTL------------DGRLIALDAKTGKAIWSQ 143 (668)
T ss_dssp GEEEEEETTTCCEEEEECCCCCGGGGGGCTTCSCCCCCEEEBTEEEEECT------------TSEEEEEETTTCCEEEEE
T ss_pred CeEEEEECCCChhceEECCCCCccccccccccCCccceEEECCEEEEEcC------------CCEEEEEECCCCCEeeee
Confidence 46889998876 58864211000 000012234556888887643 136899999877 5875
Q ss_pred eecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEe
Q 011998 76 ATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKEL 127 (473)
Q Consensus 76 l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l 127 (473)
-... .........+.++.++.+|+-.+.. ....-..++.||..+.+ |+.-
T Consensus 144 ~~~~-~~~~~~~~~~P~v~~~~v~vg~~~~-~~~~~g~v~a~D~~tG~~~W~~~ 195 (668)
T 1kv9_A 144 QTTD-PAKPYSITGAPRVVKGKVIIGNGGA-EYGVRGFVSAYDADTGKLAWRFY 195 (668)
T ss_dssp ECSC-TTSSCBCCSCCEEETTEEEECCBCT-TTCCBCEEEEEETTTCCEEEEEE
T ss_pred ccCC-CCCcceecCCCEEECCEEEEeCCCC-CcCCCCEEEEEECCCCcEEEEec
Confidence 4321 1111122223355688887743221 11134679999998876 8764
No 164
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=60.46 E-value=1.3e+02 Score=29.25 Aligned_cols=105 Identities=12% Similarity=0.034 Sum_probs=55.1
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.||.+ ..+.+||+.+..-. ... ......-.++.+ ++..++.|+.+ ..+.+
T Consensus 161 ~~~~l~sgs~D-----------~~i~iwd~~~~~~~--~~~---~~h~~~V~~v~~~p~~~~l~s~s~D------~~i~~ 218 (410)
T 1vyh_C 161 SGKLLASCSAD-----------MTIKLWDFQGFECI--RTM---HGHDHNVSSVSIMPNGDHIVSASRD------KTIKM 218 (410)
T ss_dssp TSSEEEEEETT-----------SCCCEEETTSSCEE--ECC---CCCSSCEEEEEECSSSSEEEEEETT------SEEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCcee--EEE---cCCCCCEEEEEEeCCCCEEEEEeCC------CeEEE
Confidence 46677777742 24667788765432 222 111112223333 56677777754 35788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 176 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~ 176 (473)
||..+......-. .....-.++.+ ++.+++.|+.+ ..+.+||+.+....
T Consensus 219 wd~~~~~~~~~~~-----~h~~~v~~~~~~~~g~~l~s~s~D------~~v~vwd~~~~~~~ 269 (410)
T 1vyh_C 219 WEVQTGYCVKTFT-----GHREWVRMVRPNQDGTLIASCSND------QTVRVWVVATKECK 269 (410)
T ss_dssp EETTTCCEEEEEE-----CCSSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCCEE
T ss_pred EECCCCcEEEEEe-----CCCccEEEEEECCCCCEEEEEcCC------CeEEEEECCCCcee
Confidence 8988776433211 01111122222 35577777752 24788888776554
No 165
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=60.45 E-value=73 Score=32.57 Aligned_cols=98 Identities=9% Similarity=0.000 Sum_probs=54.5
Q ss_pred EEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEE
Q 011998 63 LYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHST 142 (473)
Q Consensus 63 v~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~ 142 (473)
+++||+.+.+...+... +. .. ....-+++.+++++.+... ...++++|+.+.+++.+.. . .......+
T Consensus 134 ~~l~d~~~g~~~~l~~~---~~--~~-~~~spDG~~la~~~~~~~~--~~~i~~~d~~~g~~~~l~~---~-~~~~~~~~ 201 (582)
T 3o4h_A 134 VALYALDGGGLRELARL---PG--FG-FVSDIRGDLIAGLGFFGGG--RVSLFTSNLSSGGLRVFDS---G-EGSFSSAS 201 (582)
T ss_dssp EEEEEEETTEEEEEEEE---SS--CE-EEEEEETTEEEEEEEEETT--EEEEEEEETTTCCCEEECC---S-SCEEEEEE
T ss_pred ceEEEccCCcEEEeecC---CC--ce-EEECCCCCEEEEEEEcCCC--CeEEEEEcCCCCCceEeec---C-CCccccce
Confidence 34778888877776543 22 22 2223356655655544332 2459999999999887753 1 11111112
Q ss_pred EEECCEEEEEecccCCCCccccEEEEeCCCCcEE
Q 011998 143 VAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 176 (473)
Q Consensus 143 ~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~ 176 (473)
..-+++.++.+.. .+ ...++++|+.++...
T Consensus 202 ~SpDG~~l~~~~~--~~--~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 202 ISPGMKVTAGLET--AR--EARLVTVDPRDGSVE 231 (582)
T ss_dssp ECTTSCEEEEEEC--SS--CEEEEEECTTTCCEE
T ss_pred ECCCCCEEEEccC--CC--eeEEEEEcCCCCcEE
Confidence 2224554433322 11 246999999998877
No 166
>1k32_A Tricorn protease; protein degradation, substrate gating, serine protease, beta propeller, proteasome, hydrolase; 2.00A {Thermoplasma acidophilum} SCOP: b.36.1.3 b.68.7.1 b.69.9.1 c.14.1.2 PDB: 1n6e_A 1n6d_A 1n6f_A*
Probab=59.89 E-value=2e+02 Score=32.00 Aligned_cols=140 Identities=11% Similarity=0.019 Sum_probs=72.4
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEE-EEECCCCCEEEeeCCCCCCCCccee
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVH-ILDTDTLTWKELNTSGMVLSPRAGH 140 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~-~yD~~t~~W~~l~~~g~~p~~R~~h 140 (473)
.+++++..+.....+... +..+..+.... +++.+++++. -..+| +||..+.+...+.. .....+
T Consensus 318 ~i~~~~~~~~~~~~~~~~---~~~~~~~~~~s-dg~~l~~~s~------~~~l~~~~d~~~~~~~~l~~-----~~~~~~ 382 (1045)
T 1k32_A 318 QAFIQDVSGTYVLKVPEP---LRIRYVRRGGD-TKVAFIHGTR------EGDFLGIYDYRTGKAEKFEE-----NLGNVF 382 (1045)
T ss_dssp EEEEECTTSSBEEECSCC---SCEEEEEECSS-SEEEEEEEET------TEEEEEEEETTTCCEEECCC-----CCCSEE
T ss_pred EEEEEcCCCCceEEccCC---CcceEEeeeEc-CCCeEEEEEC------CCceEEEEECCCCCceEecC-----Ccccee
Confidence 688888887765554221 21122222233 5555555443 24789 99998887655541 111122
Q ss_pred EEEE-ECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC----CCC
Q 011998 141 STVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK----SLE 215 (473)
Q Consensus 141 s~~~-~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~----~~~ 215 (473)
..+. -+++.++++... ..++++|+.+++-..+..... .... . ..+. .+++.+++++... ...
T Consensus 383 ~~~~SpDG~~la~~~~~------~~v~~~d~~tg~~~~~~~~~~---~~v~-~-~~~S--pDG~~la~~~~~~~~~~~~~ 449 (1045)
T 1k32_A 383 AMGVDRNGKFAVVANDR------FEIMTVDLETGKPTVIERSRE---AMIT-D-FTIS--DNSRFIAYGFPLKHGETDGY 449 (1045)
T ss_dssp EEEECTTSSEEEEEETT------SEEEEEETTTCCEEEEEECSS---SCCC-C-EEEC--TTSCEEEEEEEECSSTTCSC
T ss_pred eeEECCCCCEEEEECCC------CeEEEEECCCCceEEeccCCC---CCcc-c-eEEC--CCCCeEEEEecCccccccCC
Confidence 2222 245555665531 369999999988776653211 1111 1 1221 3555556655432 011
Q ss_pred ccCcEEEEEccccc
Q 011998 216 ALDDMYYLYTGLVN 229 (473)
Q Consensus 216 ~~~dv~~ld~~~~~ 229 (473)
....++.+|.....
T Consensus 450 ~~~~i~l~d~~~g~ 463 (1045)
T 1k32_A 450 VMQAIHVYDMEGRK 463 (1045)
T ss_dssp CEEEEEEEETTTTE
T ss_pred CCCeEEEEECCCCc
Confidence 23467777776543
No 167
>3ba0_A Macrophage metalloelastase; FULL-length MMP-12, hemopexin domain, catalytic domain, domain interaction., calcium, extracellular matrix; 3.00A {Homo sapiens} PDB: 2jxy_A
Probab=59.21 E-value=1e+02 Score=30.28 Aligned_cols=109 Identities=11% Similarity=0.081 Sum_probs=60.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eE-EEeecCCCCCC-CceeeEEEEE--CCEEEEEeCCCCCCCccc
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VW-KRATTSGNPPS-ARDSHTCSSW--KNKIIVIGGEDGHDYYLS 112 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W-~~l~~~g~~P~-~R~~hs~~~~--~~~IyV~GG~~~~~~~~n 112 (473)
++++|+|=| +.+|+|+.... .+ +.+...| .|. +..--++... ++++|+|=| +
T Consensus 236 ~g~~~fFkg-------------~~yWr~~~~~~~~gyPk~I~~~G-lP~~~~~IDAA~~~~~~~~~yfFkG--------~ 293 (365)
T 3ba0_A 236 RNQVFLFKD-------------DKYWLISNLRPEPNYPKSIHSFG-FPNFVKKIDAAVFNPRFYRTYFFVD--------N 293 (365)
T ss_dssp GTEEEEEET-------------TEEEECSTTSCTTTCSEETTTTT-CCTTCCCCCEEEEETTTTEEEEEET--------T
T ss_pred CCEEEEEeC-------------CEEEEEcCCcccCCCCceeeecc-CCCCCCCcCEEEEeCCCCEEEEEEC--------C
Confidence 689999988 35788764321 11 1222222 222 1122334444 589999976 5
Q ss_pred eEEEEECCCCCEEEeeCC----CCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 113 DVHILDTDTLTWKELNTS----GMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 113 dv~~yD~~t~~W~~l~~~----g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
..|+||..+++-..--+. +-+..+..-.++... ++++|+|-|. ..|+||..+.+-..
T Consensus 294 ~yw~yd~~~~~v~~gyPk~I~~~f~g~p~~iDaA~~~~~g~~YfFkg~--------~ywr~d~~~~~v~~ 355 (365)
T 3ba0_A 294 QYWRYDERRQMMDPGYPKLITKNFQGIGPKIDAVFYSKNKYYYFFQGS--------NQFEYDFLLQRITK 355 (365)
T ss_dssp EEEEEETTTTEECSSCCCCHHHHSTTCCSSCSEEEEETTTEEEEEETT--------EEEEEETTTTEEEE
T ss_pred EEEEEeCCcceecCCCCcchhhcCCCCCCccceeeEecCCcEEEEeCC--------EEEEEECCccEEec
Confidence 689999876542110000 001122333455555 7889999774 38999988776544
No 168
>1pjx_A Dfpase, DIISOPROPYLFLUOROPHOSPHATASE; phosphotriesterase (PTE), nitrogen-calcium coordination, BET propeller; HET: ME2 MES PGE; 0.85A {Loligo vulgaris} SCOP: b.68.6.1 PDB: 1e1a_A* 2gvv_A* 2gvw_A 3byc_A 3kgg_A 3o4p_A* 3li3_A 2gvx_A 2gvu_A 3li4_A 2iaq_A 3li5_A* 2iao_A 2iap_A 2iau_A 2iax_A 2iaw_A 2ias_A 2iat_A 2iar_A ...
Probab=58.60 E-value=1.1e+02 Score=27.84 Aligned_cols=110 Identities=14% Similarity=0.120 Sum_probs=58.1
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEEEECCCCCEEEe-eCCCCCCCCc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKEL-NTSGMVLSPR 137 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l-~~~g~~p~~R 137 (473)
..+++||+.+.++..+...........-++++.. + ++|||.... +.+++||+. .+...+ ..........
T Consensus 46 ~~i~~~d~~~g~~~~~~~~~~~~~~~~~~~i~~~~~~g~l~v~~~~-------~~l~~~d~~-g~~~~~~~~~~~~~~~~ 117 (314)
T 1pjx_A 46 GEILRIDLKTGKKTVICKPEVNGYGGIPAGCQCDRDANQLFVADMR-------LGLLVVQTD-GTFEEIAKKDSEGRRMQ 117 (314)
T ss_dssp CEEEEECTTTCCEEEEECCEETTEECCEEEEEECSSSSEEEEEETT-------TEEEEEETT-SCEEECCSBCTTSCBCB
T ss_pred CEEEEEeCCCCcEEEEEecccCCCCCCCceEEEecCCCcEEEEECC-------CCEEEEeCC-CCEEEEEeccCCCcccc
Confidence 5699999989888766431000001112333333 5 788887641 368999998 777665 3211001111
Q ss_pred ceeEEEEE-CCEEEEEeccc---------CCCCccccEEEEeCCCCcEEEEe
Q 011998 138 AGHSTVAF-GKNLFVFGGFT---------DSQNLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 138 ~~hs~~~~-~~~LyV~GG~~---------~~~~~~ndv~~yd~~t~~W~~v~ 179 (473)
.-+..+.. ++++|+..... ........+++||+. .+...+.
T Consensus 118 ~~~~i~~d~~g~l~v~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-g~~~~~~ 168 (314)
T 1pjx_A 118 GCNDCAFDYEGNLWITAPAGEVAPADYTRSMQEKFGSIYCFTTD-GQMIQVD 168 (314)
T ss_dssp CCCEEEECTTSCEEEEECBCBCTTSCCCBTTSSSCEEEEEECTT-SCEEEEE
T ss_pred CCcCEEECCCCCEEEEecCcccccccccccccCCCCeEEEECCC-CCEEEec
Confidence 12233332 46788765431 011123569999987 6665543
No 169
>4gqb_B Methylosome protein 50; TIM barrel, beta-propeller, methyltransferase, methylation, transferase-protein binding complex; HET: 0XU; 2.06A {Homo sapiens}
Probab=57.73 E-value=1.3e+02 Score=28.57 Aligned_cols=105 Identities=16% Similarity=0.176 Sum_probs=54.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~ 115 (473)
+++.++.|+.+ ..+.+||+.+.+-...-. + ....-.++.+ +..+++.|+.++ .+.
T Consensus 138 dg~~l~sgs~d-----------~~i~iwd~~~~~~~~~~~-~----h~~~V~~~~~~~~~~~~l~s~s~D~------~v~ 195 (344)
T 4gqb_B 138 SGTQAVSGSKD-----------ICIKVWDLAQQVVLSSYR-A----HAAQVTCVAASPHKDSVFLSCSEDN------RIL 195 (344)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTTEEEEEEC-C----CSSCEEEEEECSSCTTEEEEEETTS------CEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEc-C----cCCceEEEEecCCCCCceeeecccc------ccc
Confidence 46677777742 358889998875433211 1 1111122222 345778787654 477
Q ss_pred EEECCCCCEEEeeCCCCCCCCcceeEEEEE---CCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 116 ILDTDTLTWKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 116 ~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
+||+.+.+-...-. .........++.+ ++++++.|+.+ ..+.+||+.+.+
T Consensus 196 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~p~~~~~l~sg~~d------g~v~~wd~~~~~ 248 (344)
T 4gqb_B 196 LWDTRCPKPASQIG---CSAPGYLPTSLAWHPQQSEVFVFGDEN------GTVSLVDTKSTS 248 (344)
T ss_dssp EEETTSSSCEEECC-------CCCEEEEEECSSCTTEEEEEETT------SEEEEEESCC--
T ss_pred cccccccceeeeee---cceeeccceeeeecCCCCcceEEeccC------CcEEEEECCCCc
Confidence 88988776433211 1111111222222 34577777752 248888987653
No 170
>1yr2_A Prolyl oligopeptidase; prolyl endopeptidase, mechanistic study, celiac sprue, hydro; 1.80A {Novosphingobium capsulatum}
Probab=57.18 E-value=2e+02 Score=30.53 Aligned_cols=104 Identities=12% Similarity=0.040 Sum_probs=61.7
Q ss_pred eCeEEEEECCCC--e-EEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCC--CCEEEeeCCCCCC
Q 011998 60 YNDLYILNTETF--V-WKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVL 134 (473)
Q Consensus 60 ~~dv~~yd~~t~--~-W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~p 134 (473)
.+++|++|+.+. . |..+... ..... ......++.||+....+. ....++++|+.+ ..|+.+-+.. .
T Consensus 293 ~~~l~~~d~~~~~~~~~~~l~~~---~~~~~-~~~~~dg~~l~~~s~~~~---~~~~l~~~d~~~~~~~~~~l~~~~--~ 363 (741)
T 1yr2_A 293 VNTVHVARVTNGKIGPVTALIPD---LKAQW-DFVDGVGDQLWFVSGDGA---PLKKIVRVDLSGSTPRFDTVVPES--K 363 (741)
T ss_dssp CCEEEEEEEETTEECCCEEEECS---SSSCE-EEEEEETTEEEEEECTTC---TTCEEEEEECSSSSCEEEEEECCC--S
T ss_pred cceEEEEECCCCCCcccEEecCC---CCceE-EEEeccCCEEEEEECCCC---CCCEEEEEeCCCCccccEEEecCC--C
Confidence 468999999877 6 8877543 11122 222345778888765432 246799999988 5798886421 1
Q ss_pred CCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 135 SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 135 ~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
. .-......+++|++..... -...+|.+++....-+.+
T Consensus 364 -~-~l~~~~~~~~~lv~~~~~d----g~~~l~~~~~~g~~~~~l 401 (741)
T 1yr2_A 364 -D-NLESVGIAGNRLFASYIHD----AKSQVLAFDLDGKPAGAV 401 (741)
T ss_dssp -S-EEEEEEEEBTEEEEEEEET----TEEEEEEEETTSCEEEEC
T ss_pred -C-eEEEEEEECCEEEEEEEEC----CEEEEEEEeCCCCceeec
Confidence 1 1122334477777665442 234588898765533333
No 171
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=56.71 E-value=77 Score=29.32 Aligned_cols=105 Identities=12% Similarity=0.061 Sum_probs=52.5
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-C-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..+|+||+.+.+++.+. . ... -..++.. + ..||+....... ...+.+++||...............+...-
T Consensus 169 ~~v~~~d~~~g~~~~~~-~--~~~---p~gl~~spdg~~lyv~~~~~~~-~~~~~i~~~~~~~~~l~~~~~~~~~~~~~p 241 (305)
T 3dr2_A 169 HSVYRLPPDGSPLQRMA-D--LDH---PNGLAFSPDEQTLYVSQTPEQG-HGSVEITAFAWRDGALHDRRHFASVPDGLP 241 (305)
T ss_dssp EEEEEECSSSCCCEEEE-E--ESS---EEEEEECTTSSEEEEEECCC----CCCEEEEEEEETTEEEEEEEEECCSSSCC
T ss_pred CeEEEEcCCCCcEEEEe-c--CCC---CcceEEcCCCCEEEEEecCCcC-CCCCEEEEEEecCCCccCCeEEEECCCCCC
Confidence 57999999888877664 1 111 1233333 3 457776542211 113578999877654322111000111110
Q ss_pred eeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEee
Q 011998 139 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVIT 180 (473)
Q Consensus 139 ~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~ 180 (473)
...+.--+++||+..+ +.+++||++...-..+..
T Consensus 242 dgi~~d~~G~lwv~~~--------~gv~~~~~~g~~~~~~~~ 275 (305)
T 3dr2_A 242 DGFCVDRGGWLWSSSG--------TGVCVFDSDGQLLGHIPT 275 (305)
T ss_dssp CSEEECTTSCEEECCS--------SEEEEECTTSCEEEEEEC
T ss_pred CeEEECCCCCEEEecC--------CcEEEECCCCCEEEEEEC
Confidence 1111222456777542 249999997665555553
No 172
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=56.33 E-value=1.5e+02 Score=28.90 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=34.2
Q ss_pred ceEEEEEC--C-CCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCC---CccccEEEEeCCCCcEE
Q 011998 112 SDVHILDT--D-TLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQ---NLYDDLYMIDVDSGLWT 176 (473)
Q Consensus 112 ndv~~yD~--~-t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~---~~~ndv~~yd~~t~~W~ 176 (473)
..+.+||. . ...+..+.. +.....-.+++...+.+++..+..... ...-.+|.++.+++.|+
T Consensus 330 ~~i~iw~~~~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~v~~~~~~~~~~~~~~i~v~~~~~~~~~~~ 397 (450)
T 2vdu_B 330 KCIIILEMSEKQKGDLALKQI---ITFPYNVISLSAHNDEFQVTLDNKESSGVQKNFAKFIEYNLNENSFV 397 (450)
T ss_dssp SEEEEEEECSSSTTCEEEEEE---EECSSCEEEEEEETTEEEEEECCTTCCSSCCCSEEEEEEETTTTEEE
T ss_pred CeEEEEEeccCCCCceeeccE---eccCCceEEEEecCCcEEEEEecccCCCCCCcceEEEEEEcCCCeEE
Confidence 45777877 3 345555543 222222334555667777776653211 12235777788888886
No 173
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=56.13 E-value=1.2e+02 Score=27.75 Aligned_cols=140 Identities=14% Similarity=0.097 Sum_probs=67.3
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEEC----CEEEEEecCCCCCCCCCceeeCeEEEEECCCCe--EEEeec
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVG----KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATT 78 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~----~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~ 78 (473)
..+.+||..+.+....... .....-.++.... +.+++.|+.+ ..+.+||..+.. ...+..
T Consensus 44 ~~v~iw~~~~~~~~~~~~~---~~~~~v~~~~~~~~~~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~~ 109 (357)
T 3i2n_A 44 GVIQLYEIQHGDLKLLREI---EKAKPIKCGTFGATSLQQRYLATGDFG-----------GNLHIWNLEAPEMPVYSVKG 109 (357)
T ss_dssp EEEEEEEECSSSEEEEEEE---EESSCEEEEECTTCCTTTCCEEEEETT-----------SCEEEECTTSCSSCSEEECC
T ss_pred cEEEEEeCCCCcccceeee---cccCcEEEEEEcCCCCCCceEEEecCC-----------CeEEEEeCCCCCccEEEEEe
Confidence 3577788777765543211 0011111222222 3677777742 358888887654 122211
Q ss_pred CCCCCCCceeeEEE-------EECCEEEEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCCcceeEEEE-----
Q 011998 79 SGNPPSARDSHTCS-------SWKNKIIVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSPRAGHSTVA----- 144 (473)
Q Consensus 79 ~g~~P~~R~~hs~~-------~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~----- 144 (473)
. ..+ -.++. .-++.+++.|+.++ .+.+||+.+.. ...+.... ....+.-.+++.
T Consensus 110 ~---~~~--v~~~~~~~~~~~s~~~~~l~~~~~d~------~i~vwd~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~ 177 (357)
T 3i2n_A 110 H---KEI--INAIDGIGGLGIGEGAPEIVTGSRDG------TVKVWDPRQKDDPVANMEPVQ-GENKRDCWTVAFGNAYN 177 (357)
T ss_dssp C---SSC--EEEEEEESGGGCC-CCCEEEEEETTS------CEEEECTTSCSSCSEEECCCT-TSCCCCEEEEEEECCCC
T ss_pred c---ccc--eEEEeeccccccCCCccEEEEEeCCC------eEEEEeCCCCCCcceeccccC-CCCCCceEEEEEEeccC
Confidence 1 111 11111 12456777777543 47888887764 33333210 001112222221
Q ss_pred ECCEEEEEecccCCCCccccEEEEeCCCCcEE
Q 011998 145 FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 176 (473)
Q Consensus 145 ~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~ 176 (473)
.++.+++.|+.. ..+.+||+.+..-.
T Consensus 178 ~~~~~l~~~~~d------~~i~i~d~~~~~~~ 203 (357)
T 3i2n_A 178 QEERVVCAGYDN------GDIKLFDLRNMALR 203 (357)
T ss_dssp -CCCEEEEEETT------SEEEEEETTTTEEE
T ss_pred CCCCEEEEEccC------CeEEEEECccCcee
Confidence 345667776642 35899999887643
No 174
>1flg_A Protein (quinoprotein ethanol dehydrogenase); superbarrel, oxidoreductase; HET: PQQ; 2.60A {Pseudomonas aeruginosa} SCOP: b.70.1.1
Probab=56.06 E-value=1.9e+02 Score=30.04 Aligned_cols=121 Identities=16% Similarity=0.243 Sum_probs=67.0
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCCCCC---ceeeEEEEECCEEEEEeCCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSA---RDSHTCSSWKNKIIVIGGEDGHD 108 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~---R~~hs~~~~~~~IyV~GG~~~~~ 108 (473)
+.++.++.||+.... +.++.+|..+. .|+.-........+ ....+.++.+++||+...
T Consensus 63 ~P~v~~g~vyv~~~~------------~~v~AlD~~tG~~~W~~~~~~~~~~~~~~~~~~~g~a~~~~~v~~~t~----- 125 (582)
T 1flg_A 63 QAIVSDGVIYVTASY------------SRLFALDAKTGKRLWTYNHRLPDDIRPCCDVVNRGAAIYGDKVFFGTL----- 125 (582)
T ss_dssp CCEEETTEEEEEETT------------TEEEEEESSSCCEEEEEECCCCTTCCCSSCSCCCCCEEETTEEEEEET-----
T ss_pred ccEEECCEEEEEcCC------------CCEEEEECCCCcEEEEEcCCCCcccccccccCCCccEEECCEEEEEeC-----
Confidence 445679999998763 24899998776 58764322110000 011234567888888532
Q ss_pred CccceEEEEECCCCC--EEEeeCCCCCCCCcc--eeEEEEECC------EEEEEecccCCCCccccEEEEeCCCC--cEE
Q 011998 109 YYLSDVHILDTDTLT--WKELNTSGMVLSPRA--GHSTVAFGK------NLFVFGGFTDSQNLYDDLYMIDVDSG--LWT 176 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~--W~~l~~~g~~p~~R~--~hs~~~~~~------~LyV~GG~~~~~~~~ndv~~yd~~t~--~W~ 176 (473)
-..++.+|..|.+ |+.-.. .+...+ ..+.++.++ .+| +|...........++.||.+++ .|+
T Consensus 126 --dg~l~AlD~~TG~~~W~~~~~---~~~~~~~~~~sP~v~~~~~~G~~~v~-vg~~~~e~~~~g~v~alD~~tG~~~W~ 199 (582)
T 1flg_A 126 --DASVVALNKNTGKVVWKKKFA---DHGAGYTMTGAPTIVKDGKTGKVLLI-HGSSGDEFGVVGRLFARDPDTGEEIWM 199 (582)
T ss_dssp --TTEEEEEESSSCCEEEEEECS---CGGGTCBCCSCCEEEECTTTCCEEEE-ECCBCGGGCCBCEEEEECTTTCCEEEE
T ss_pred --CCEEEEEECCCCCEEeeecCC---CCCcCcccccCCEEeCCCcCCcEEEE-EeccccccCCCCEEEEEECCCCCEEee
Confidence 2568999998876 875432 111111 112234444 444 4432111123456999999876 486
Q ss_pred E
Q 011998 177 K 177 (473)
Q Consensus 177 ~ 177 (473)
.
T Consensus 200 ~ 200 (582)
T 1flg_A 200 R 200 (582)
T ss_dssp E
T ss_pred c
Confidence 4
No 175
>1r5m_A SIR4-interacting protein SIF2; transcription corepressor, WD40 repeat, beta propeller; 1.55A {Saccharomyces cerevisiae}
Probab=55.92 E-value=1.4e+02 Score=28.17 Aligned_cols=149 Identities=8% Similarity=-0.098 Sum_probs=69.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC-----------CceeeEEEEECCEEEEEeCCCCC
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS-----------ARDSHTCSSWKNKIIVIGGEDGH 107 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~-----------~R~~hs~~~~~~~IyV~GG~~~~ 107 (473)
++..++.|+.+ ..+.+||+.+............+. ...-.++....+..++.|+.+
T Consensus 160 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 226 (425)
T 1r5m_A 160 DGTHIISMDVE-----------NVTILWNVISGTVMQHFELKETGGSSINAENHSGDGSLGVDVEWVDDDKFVIPGPK-- 226 (425)
T ss_dssp TSSEEEEEETT-----------CCEEEEETTTTEEEEEECCC---------------CCCBSCCEEEETTEEEEECGG--
T ss_pred CCCEEEEEecC-----------CeEEEEECCCCcEEEEeeccccCccceeeccccCCcceeeEEEEcCCCEEEEEcCC--
Confidence 45566666632 358889998876544322211110 000122222333346666643
Q ss_pred CCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCC
Q 011998 108 DYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPS 186 (473)
Q Consensus 108 ~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~ 186 (473)
..+.+||..+.+-...-. .....-.+++.. ++++++.|+.. ..+.+||+.+......-.. ..
T Consensus 227 ----g~i~~~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~~~~---~~ 289 (425)
T 1r5m_A 227 ----GAIFVYQITEKTPTGKLI----GHHGPISVLEFNDTNKLLLSASDD------GTLRIWHGGNGNSQNCFYG---HS 289 (425)
T ss_dssp ----GCEEEEETTCSSCSEEEC----CCSSCEEEEEEETTTTEEEEEETT------SCEEEECSSSBSCSEEECC---CS
T ss_pred ----CeEEEEEcCCCceeeeec----cCCCceEEEEECCCCCEEEEEcCC------CEEEEEECCCCccceEecC---CC
Confidence 468899988764322211 111112223333 45566666642 2488888876543222210 11
Q ss_pred CcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 187 ARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 187 ~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.. ..++.+. .++ +++.|+.+. .+.+++....
T Consensus 290 ~~--i~~~~~~--~~~-~l~~~~~d~------~i~i~d~~~~ 320 (425)
T 1r5m_A 290 QS--IVSASWV--GDD-KVISCSMDG------SVRLWSLKQN 320 (425)
T ss_dssp SC--EEEEEEE--TTT-EEEEEETTS------EEEEEETTTT
T ss_pred cc--EEEEEEC--CCC-EEEEEeCCC------cEEEEECCCC
Confidence 11 1222222 245 666666543 4677776543
No 176
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=55.30 E-value=1.6e+02 Score=28.67 Aligned_cols=144 Identities=8% Similarity=0.003 Sum_probs=74.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++.+++.|+.+ ..+.+||+.+.+-...-.. .... -.+++.. ++..++.|+.++ .+.+|
T Consensus 279 ~~~~l~~~~~d-----------~~i~vwd~~~~~~~~~~~~---~~~~-v~~~~~~~~~~~l~sg~~dg------~i~vw 337 (464)
T 3v7d_B 279 HGNIVVSGSYD-----------NTLIVWDVAQMKCLYILSG---HTDR-IYSTIYDHERKRCISASMDT------TIRIW 337 (464)
T ss_dssp ETTEEEEEETT-----------SCEEEEETTTTEEEEEECC---CSSC-EEEEEEETTTTEEEEEETTS------CEEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEecC---CCCC-EEEEEEcCCCCEEEEEeCCC------cEEEE
Confidence 45566666642 3588999987754332211 1111 1222222 566777777543 47889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEec
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLD 197 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~ 197 (473)
|..+.+-...- ......-.++.+.+..++.|+.+ ..+.+||+.+..-...... .......+..
T Consensus 338 d~~~~~~~~~~-----~~h~~~v~~~~~~~~~l~s~s~d------g~v~vwd~~~~~~~~~~~~----~~~~~~~~~~-- 400 (464)
T 3v7d_B 338 DLENGELMYTL-----QGHTALVGLLRLSDKFLVSAAAD------GSIRGWDANDYSRKFSYHH----TNLSAITTFY-- 400 (464)
T ss_dssp ETTTTEEEEEE-----CCCSSCEEEEEECSSEEEEEETT------SEEEEEETTTCCEEEEEEC----TTCCCEEEEE--
T ss_pred ECCCCcEEEEE-----eCCCCcEEEEEEcCCEEEEEeCC------CcEEEEECCCCceeeeecC----CCCccEEEEE--
Confidence 98876533221 11222233444556677777652 2488999987653322221 1111112222
Q ss_pred cccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 198 PLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 198 ~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
.++.+++.|+ + +.+.++|..+.+
T Consensus 401 --~~~~~l~~~~-d------g~i~iwd~~~g~ 423 (464)
T 3v7d_B 401 --VSDNILVSGS-E------NQFNIYNLRSGK 423 (464)
T ss_dssp --ECSSEEEEEE-T------TEEEEEETTTCC
T ss_pred --eCCCEEEEec-C------CeEEEEECCCCc
Confidence 2566666665 3 247777776543
No 177
>3iuj_A Prolyl endopeptidase; hydrolase; 1.80A {Aeromonas punctata} PDB: 3iul_A 3ium_A 3ivm_A* 3iur_A* 3iun_A* 3iuq_A* 3muo_A* 3mun_A*
Probab=54.85 E-value=2.1e+02 Score=30.13 Aligned_cols=103 Identities=13% Similarity=0.097 Sum_probs=62.6
Q ss_pred CeEEEEECCCC--eEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCC---CEEEeeCCCCCCC
Q 011998 61 NDLYILNTETF--VWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLS 135 (473)
Q Consensus 61 ~dv~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~---~W~~l~~~g~~p~ 135 (473)
+++|++|..+. .|..+... ...........++.||+....+.. ...++++|+.+. .|+.+.+.. .
T Consensus 259 ~~i~~~d~~~~~~~~~~l~~~----~~~~~~~~~~~g~~l~~~t~~~~~---~~~l~~~d~~~~~~~~~~~l~~~~--~- 328 (693)
T 3iuj_A 259 NRLYVKDLSQENAPLLTVQGD----LDADVSLVDNKGSTLYLLTNRDAP---NRRLVTVDAANPGPAHWRDLIPER--Q- 328 (693)
T ss_dssp CEEEEEETTSTTCCCEEEECS----SSSCEEEEEEETTEEEEEECTTCT---TCEEEEEETTSCCGGGCEEEECCC--S-
T ss_pred cEEEEEECCCCCCceEEEeCC----CCceEEEEeccCCEEEEEECCCCC---CCEEEEEeCCCCCccccEEEecCC--C-
Confidence 68999998766 78777542 111122234458899998775432 467999998764 488776421 1
Q ss_pred CcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEe
Q 011998 136 PRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI 179 (473)
Q Consensus 136 ~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~ 179 (473)
... .....++.|++..-. + -...++++|+.....+.+.
T Consensus 329 -~~~-~~s~~g~~lv~~~~~-~---g~~~l~~~d~~g~~~~~l~ 366 (693)
T 3iuj_A 329 -QVL-TVHSGSGYLFAEYMV-D---ATARVEQFDYEGKRVREVA 366 (693)
T ss_dssp -SCE-EEEEETTEEEEEEEE-T---TEEEEEEECTTSCEEEEEC
T ss_pred -CEE-EEEEECCEEEEEEEE-C---CeeEEEEEECCCCeeEEee
Confidence 112 444556666554332 1 2346899998876555554
No 178
>2pm9_A Protein WEB1, protein transport protein SEC31; beta propeller; 3.30A {Saccharomyces cerevisiae}
Probab=53.18 E-value=1e+02 Score=29.23 Aligned_cols=69 Identities=16% Similarity=0.136 Sum_probs=36.3
Q ss_pred CEEEEEeCCCCCCCccceEEEEECCCCC------EEEeeCCCCCCCCcceeEEEEEC--CEEEEEecccCCCCccccEEE
Q 011998 96 NKIIVIGGEDGHDYYLSDVHILDTDTLT------WKELNTSGMVLSPRAGHSTVAFG--KNLFVFGGFTDSQNLYDDLYM 167 (473)
Q Consensus 96 ~~IyV~GG~~~~~~~~ndv~~yD~~t~~------W~~l~~~g~~p~~R~~hs~~~~~--~~LyV~GG~~~~~~~~ndv~~ 167 (473)
+.+++.|+.++ .+.+||+.+.. -..... ........-.+++... +.+++.|+.. ..+.+
T Consensus 126 ~~~l~s~~~dg------~v~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~v~i 192 (416)
T 2pm9_A 126 DNVLASGGNNG------EIFIWDMNKCTESPSNYTPLTPG-QSMSSVDEVISLAWNQSLAHVFASAGSS------NFASI 192 (416)
T ss_dssp TTBEEEECSSS------CEEBCBTTTTSSCTTTCCCBCCC-CSCCSSCCCCEEEECSSCTTEEEEESSS------SCEEE
T ss_pred CCEEEEEcCCC------eEEEEECCCCccccccccccccc-cccCCCCCeeEEEeCCCCCcEEEEEcCC------CCEEE
Confidence 67788887543 47788887664 111100 0001111122333332 4577777752 34899
Q ss_pred EeCCCCcEEE
Q 011998 168 IDVDSGLWTK 177 (473)
Q Consensus 168 yd~~t~~W~~ 177 (473)
||+.+.....
T Consensus 193 wd~~~~~~~~ 202 (416)
T 2pm9_A 193 WDLKAKKEVI 202 (416)
T ss_dssp EETTTTEEEE
T ss_pred EECCCCCcce
Confidence 9998875433
No 179
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=52.75 E-value=1.5e+02 Score=27.89 Aligned_cols=156 Identities=11% Similarity=0.084 Sum_probs=79.1
Q ss_pred CCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE
Q 011998 14 SHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS 93 (473)
Q Consensus 14 t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~ 93 (473)
..+|+.+......+ ...-.++...++.+|+.|-. ..+++-+-.-.+|+++......|. ..+.++.
T Consensus 65 G~tW~~~~~~~~~~-~~~~~~i~~~~~~~~~~g~~------------g~i~~S~DgG~tW~~~~~~~~~~~--~~~~i~~ 129 (327)
T 2xbg_A 65 GQTWEPRTLVLDHS-DYRFNSVSFQGNEGWIVGEP------------PIMLHTTDGGQSWSQIPLDPKLPG--SPRLIKA 129 (327)
T ss_dssp TSSCEECCCCCSCC-CCEEEEEEEETTEEEEEEET------------TEEEEESSTTSSCEECCCCTTCSS--CEEEEEE
T ss_pred CCCCeECCCCCCCC-CccEEEEEecCCeEEEEECC------------CeEEEECCCCCCceECccccCCCC--CeEEEEE
Confidence 35898874211111 11233444556788887531 134543333568998864321221 1233333
Q ss_pred -ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCC
Q 011998 94 -WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVD 171 (473)
Q Consensus 94 -~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~ 171 (473)
-++.+|+.|.. ..+++-.=....|+.+.. +.+...+.++.. ++.+|++|-. ..+++-+-.
T Consensus 130 ~~~~~~~~~~~~-------g~v~~S~DgG~tW~~~~~----~~~~~~~~~~~~~~~~~~~~g~~-------G~~~~S~d~ 191 (327)
T 2xbg_A 130 LGNGSAEMITNV-------GAIYRTKDSGKNWQALVQ----EAIGVMRNLNRSPSGEYVAVSSR-------GSFYSTWEP 191 (327)
T ss_dssp EETTEEEEEETT-------CCEEEESSTTSSEEEEEC----SCCCCEEEEEECTTSCEEEEETT-------SSEEEEECT
T ss_pred ECCCCEEEEeCC-------ccEEEEcCCCCCCEEeec----CCCcceEEEEEcCCCcEEEEECC-------CcEEEEeCC
Confidence 36888888742 124443333568999874 223334444444 3456665532 125554333
Q ss_pred -CCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcc
Q 011998 172 -SGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGG 209 (473)
Q Consensus 172 -t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG 209 (473)
...|+.+.. +.....+..+.. .++.+|+.+.
T Consensus 192 gG~tW~~~~~----~~~~~~~~~~~~---~~g~~~~~~~ 223 (327)
T 2xbg_A 192 GQTAWEPHNR----TTSRRLHNMGFT---PDGRLWMIVN 223 (327)
T ss_dssp TCSSCEEEEC----CSSSCEEEEEEC---TTSCEEEEET
T ss_pred CCCceeECCC----CCCCccceeEEC---CCCCEEEEeC
Confidence 578999864 222333333322 3567777653
No 180
>3b7f_A Glycosyl hydrolase, BNR repeat; 7-bladed beta-propeller fold, structural genomics, joint CEN structural genomics, JCSG; 2.20A {Ralstonia eutropha}
Probab=52.27 E-value=1.7e+02 Score=28.23 Aligned_cols=152 Identities=11% Similarity=0.072 Sum_probs=77.6
Q ss_pred eEEEEECCC--CeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCC
Q 011998 62 DLYILNTET--FVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 136 (473)
Q Consensus 62 dv~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~ 136 (473)
-+++|+... .+|+.+... +....-++++.. .+.||+.+..... -..+++.+-...+|+.+......+..
T Consensus 32 Gl~~~~~~~~g~~W~~~~~~---~~~~~v~~i~~dp~~~~~l~~g~~~g~~---g~gl~~s~D~G~tW~~~~~~~~~~~~ 105 (394)
T 3b7f_A 32 GAWFLASDPARRTWELRGPV---FLGHTIHHIVQDPREPERMLMAARTGHL---GPTVFRSDDGGGNWTEATRPPAFNKA 105 (394)
T ss_dssp EEEEEEECTTSCSEEEEEEE---STTSEEEEEEECSSSTTCEEEEEEC--C---CEEEEEESSTTSCCEECSBCCCCCCC
T ss_pred ceEEEECCCCCCCceECCcc---CCCCceEEEEECCCCCCeEEEEecCCCC---CccEEEeCCCCCCceECCccccCCCc
Confidence 377787655 689987421 222334555544 4678876542111 12577776677889988642111211
Q ss_pred --c-----cee--EEEEE----CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCC-------------Ccce
Q 011998 137 --R-----AGH--STVAF----GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPS-------------ARFS 190 (473)
Q Consensus 137 --R-----~~h--s~~~~----~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~-------------~R~~ 190 (473)
+ ..+ +.+.. .+.||+.+. ...|++.+-...+|+.+......|. ....
T Consensus 106 ~~~~~~~~~~~i~~l~~~~~~~~~~l~~g~~-------~ggl~~S~DgG~tW~~~~~~~~~p~~~~~~~~~~~g~~~~~~ 178 (394)
T 3b7f_A 106 PEGETGRVVDHVFWLTPGHASEPGTWYAGTS-------PQGLFRSTDHGASWEPVAGFNDHPMRRAWTGGEQDGTPDGPK 178 (394)
T ss_dssp C----CCCCCEEEEEEECCTTSTTCEEEEEE-------TTEEEEESSTTSBCEECHHHHTCTTHHHHHCCC----CCCCE
T ss_pred ccccccccccceeEEEeCCCCCCCEEEEEec-------CCcEEEEcCCCCCeEECcCccCCccccccccccccCCCCCCc
Confidence 1 112 22222 355766432 1248888777789998853211121 0111
Q ss_pred eeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccceeee
Q 011998 191 VAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNERKL 233 (473)
Q Consensus 191 ~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w~~~ 233 (473)
..+..+++...+.||+..+. ..+++.+-....|..+
T Consensus 179 i~~i~~d~~~~~~l~vg~~~-------ggl~~s~DgG~tW~~~ 214 (394)
T 3b7f_A 179 MHSILVDPRDPKHLYIGMSS-------GGVFESTDAGTDWKPL 214 (394)
T ss_dssp EEEEEECTTCTTCEEEEEET-------BEEEEESSTTSSCEEC
T ss_pred eeEEEECCCCCCEEEEEECC-------CCEEEECCCCCCceEC
Confidence 22333433234567765321 2366666666677655
No 181
>3hrp_A Uncharacterized protein; NP_812590.1, structural genomics protein of unknown function structural genomics; HET: MSE; 1.70A {Bacteroides thetaiotaomicron vpi-5482}
Probab=52.15 E-value=1.8e+02 Score=28.51 Aligned_cols=152 Identities=8% Similarity=-0.054 Sum_probs=78.5
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.||+.... ...+++||+.+..-..+...+.. .+ .+.. ++.||+...... ..+++
T Consensus 141 ~g~lyv~d~~-----------~~~I~~id~~~g~~~~~~~~~~~-----~~-ia~~~~g~~l~~~d~~~~-----~~I~~ 198 (409)
T 3hrp_A 141 NNTVLAYQRD-----------DPRVRLISVDDNKVTTVHPGFKG-----GK-PAVTKDKQRVYSIGWEGT-----HTVYV 198 (409)
T ss_dssp TTEEEEEETT-----------TTEEEEEETTTTEEEEEEETCCB-----CB-CEECTTSSEEEEEBSSTT-----CEEEE
T ss_pred CCCEEEEecC-----------CCcEEEEECCCCEEEEeeccCCC-----Cc-eeEecCCCcEEEEecCCC-----ceEEE
Confidence 4788888762 24689999998877666543211 22 3222 456666543211 17899
Q ss_pred EECCCCC-EEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcce-ee
Q 011998 117 LDTDTLT-WKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS-VA 192 (473)
Q Consensus 117 yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~-~~ 192 (473)
+|..+.. ...+.... .+....-+.+++. ++.||+... ...+++||+.+.....+...+........ ..
T Consensus 199 ~d~~~~~~~~~~g~~~-~~~~~~p~~iav~p~~g~lyv~d~-------~~~I~~~d~~~~~~~~~~~~~~~g~~~~~P~~ 270 (409)
T 3hrp_A 199 YMKASGWAPTRIGQLG-STFSGKIGAVALDETEEWLYFVDS-------NKNFGRFNVKTQEVTLIKQLELSGSLGTNPGP 270 (409)
T ss_dssp EEGGGTTCEEEEEECC-TTSCSCCCBCEECTTSSEEEEECT-------TCEEEEEETTTCCEEEEEECCCCSCCCCSSCC
T ss_pred EEcCCCceeEEeeecc-chhcCCcEEEEEeCCCCeEEEEEC-------CCcEEEEECCCCCEEEEecccccCCCCCCccc
Confidence 9987543 23331100 0011222334443 467888321 23699999998876655332111111111 10
Q ss_pred EEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 193 GDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 193 a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
...+++ .++.||+.-.. .+.+++|+...
T Consensus 271 ~ia~~p-~~g~lyv~d~~------~~~I~~~~~~g 298 (409)
T 3hrp_A 271 YLIYYF-VDSNFYMSDQN------LSSVYKITPDG 298 (409)
T ss_dssp EEEEET-TTTEEEEEETT------TTEEEEECTTC
T ss_pred cEEEeC-CCCEEEEEeCC------CCEEEEEecCC
Confidence 333321 25788887422 23477776543
No 182
>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.12 E-value=1.7e+02 Score=28.04 Aligned_cols=180 Identities=13% Similarity=0.081 Sum_probs=88.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
..+++||..+.+....... .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+....-..
T Consensus 113 ~~v~lw~~~~~~~~~~~~~---~~~~~v~~v~~s~~~~~l~~~~~d-----------g~i~iwd~~~~~~~~~~~~---- 174 (401)
T 4aez_A 113 RNVYVWNADSGSVSALAET---DESTYVASVKWSHDGSFLSVGLGN-----------GLVDIYDVESQTKLRTMAG---- 174 (401)
T ss_dssp TEEEEEETTTCCEEEEEEC---CTTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTCCEEEEECC----
T ss_pred CeEEEeeCCCCcEeEeeec---CCCCCEEEEEECCCCCEEEEECCC-----------CeEEEEECcCCeEEEEecC----
Confidence 3578888888776654321 111111222222 45666777642 3588899988764433221
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCcc
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLY 162 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ 162 (473)
....-.+..+++.+++.|+.+ ..+.+||..+..-..... ......-.++... ++.+++.|+.+
T Consensus 175 -~~~~v~~~~~~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~---~~~~~~v~~~~~~~~~~~l~s~~~d------ 238 (401)
T 4aez_A 175 -HQARVGCLSWNRHVLSSGSRS------GAIHHHDVRIANHQIGTL---QGHSSEVCGLAWRSDGLQLASGGND------ 238 (401)
T ss_dssp -CSSCEEEEEEETTEEEEEETT------SEEEEEETTSSSCEEEEE---ECCSSCEEEEEECTTSSEEEEEETT------
T ss_pred -CCCceEEEEECCCEEEEEcCC------CCEEEEecccCcceeeEE---cCCCCCeeEEEEcCCCCEEEEEeCC------
Confidence 112233344466677777754 457888887433211111 0111111222222 45577777752
Q ss_pred ccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 163 DDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 163 ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
..+.+||+.+..-...-.. . .....+..+.+ .+..+++.||... -..+..+|....
T Consensus 239 ~~v~iwd~~~~~~~~~~~~--~---~~~v~~~~~~p-~~~~ll~~~~gs~----d~~i~i~d~~~~ 294 (401)
T 4aez_A 239 NVVQIWDARSSIPKFTKTN--H---NAAVKAVAWCP-WQSNLLATGGGTM----DKQIHFWNAATG 294 (401)
T ss_dssp SCEEEEETTCSSEEEEECC--C---SSCCCEEEECT-TSTTEEEEECCTT----TCEEEEEETTTC
T ss_pred CeEEEccCCCCCccEEecC--C---cceEEEEEECC-CCCCEEEEecCCC----CCEEEEEECCCC
Confidence 3488999987653322211 0 11112233322 1445666664211 124677776653
No 183
>3i2n_A WD repeat-containing protein 92; WD40 repeats, structural genomics, structural genomic consortium, SGC, apoptosis, transcription; 1.95A {Homo sapiens}
Probab=52.03 E-value=1.4e+02 Score=27.28 Aligned_cols=154 Identities=10% Similarity=0.050 Sum_probs=72.1
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--C---CEEEEEeCCCCCCCccceE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--K---NKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~---~~IyV~GG~~~~~~~~ndv 114 (473)
..+++.|+... .-..+.+||..+.+...+...+ . ...-.++.+ + +.+++.|+.++ .+
T Consensus 31 ~~l~~~~s~~~--------~d~~v~iw~~~~~~~~~~~~~~---~-~~~v~~~~~~~~~~~~~~l~~~~~dg------~i 92 (357)
T 3i2n_A 31 AKFVTMGNFAR--------GTGVIQLYEIQHGDLKLLREIE---K-AKPIKCGTFGATSLQQRYLATGDFGG------NL 92 (357)
T ss_dssp SEEEEEEC--C--------CCEEEEEEEECSSSEEEEEEEE---E-SSCEEEEECTTCCTTTCCEEEEETTS------CE
T ss_pred ceEEEecCccC--------CCcEEEEEeCCCCcccceeeec---c-cCcEEEEEEcCCCCCCceEEEecCCC------eE
Confidence 36666776310 0236888898887765443211 0 111223333 2 47777777543 47
Q ss_pred EEEECCCCC--EEEeeCCCCCCCCcceeEEEE-------ECCEEEEEecccCCCCccccEEEEeCCCCc--EEEEeeCCC
Q 011998 115 HILDTDTLT--WKELNTSGMVLSPRAGHSTVA-------FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL--WTKVITTGE 183 (473)
Q Consensus 115 ~~yD~~t~~--W~~l~~~g~~p~~R~~hs~~~-------~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~--W~~v~~~g~ 183 (473)
.+||..+.. ...+.. ....-.++.. -++.+++.|+.. ..+.+||+.+.. ...+.....
T Consensus 93 ~iwd~~~~~~~~~~~~~-----~~~~v~~~~~~~~~~~s~~~~~l~~~~~d------~~i~vwd~~~~~~~~~~~~~~~~ 161 (357)
T 3i2n_A 93 HIWNLEAPEMPVYSVKG-----HKEIINAIDGIGGLGIGEGAPEIVTGSRD------GTVKVWDPRQKDDPVANMEPVQG 161 (357)
T ss_dssp EEECTTSCSSCSEEECC-----CSSCEEEEEEESGGGCC-CCCEEEEEETT------SCEEEECTTSCSSCSEEECCCTT
T ss_pred EEEeCCCCCccEEEEEe-----cccceEEEeeccccccCCCccEEEEEeCC------CeEEEEeCCCCCCcceeccccCC
Confidence 788887664 222211 0111111111 235566777652 248889988764 333332111
Q ss_pred CCCCcceeeEEE-eccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 184 GPSARFSVAGDC-LDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 184 ~P~~R~~~~a~~-~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
...+...+... .....++.+++.|+.+. .+..+|.....
T Consensus 162 -~~~~~v~~~~~~~~~~~~~~~l~~~~~d~------~i~i~d~~~~~ 201 (357)
T 3i2n_A 162 -ENKRDCWTVAFGNAYNQEERVVCAGYDNG------DIKLFDLRNMA 201 (357)
T ss_dssp -SCCCCEEEEEEECCCC-CCCEEEEEETTS------EEEEEETTTTE
T ss_pred -CCCCceEEEEEEeccCCCCCEEEEEccCC------eEEEEECccCc
Confidence 00111111111 00113566777776543 46777766543
No 184
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=51.34 E-value=1.3e+02 Score=30.59 Aligned_cols=108 Identities=12% Similarity=0.113 Sum_probs=58.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eE-EEee-cCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccc
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VW-KRAT-TSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLS 112 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W-~~l~-~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~n 112 (473)
++++|+|=| +.+|+|+..+- .+ +.+. ..+-+..+..--++... ++++|+|=| +
T Consensus 318 ~g~~~fFKg-------------~~~W~~~~~~~~~gyP~~i~~~~g~P~~~~~IDAA~~~~~~~k~yfFkG--------~ 376 (450)
T 1su3_A 318 RDEVRFFKG-------------NKYWAVQGQNVLHGYPKDIYSSFGFPRTVKHIDAALSEENTGKTYFFVA--------N 376 (450)
T ss_dssp GTEEEEEET-------------TEEEEEETTEECTTCSEEHHHHHCCCTTCCCCCEEEEETTTTEEEEEET--------T
T ss_pred CCeEEEEeC-------------CEEEEecCCcccCCCceeeehhhcCCCCCCccceEEEEcCCCeEEEEeC--------C
Confidence 689999988 35788874320 00 1111 11111111112233333 589999976 5
Q ss_pred eEEEEECCCCCEE-----EeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEE
Q 011998 113 DVHILDTDTLTWK-----ELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT 176 (473)
Q Consensus 113 dv~~yD~~t~~W~-----~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~ 176 (473)
..|+||..+.+-. .+.. +-...+..-.++...++++|+|-|. ..|+||..+.+=.
T Consensus 377 ~yw~yd~~~~~~~~gYPk~I~~-~fpgip~~iDAA~~~~g~~YFFkg~--------~ywr~d~~~~~v~ 436 (450)
T 1su3_A 377 KYWRYDEYKRSMDPGYPKMIAH-DFPGIGHKVDAVFMKDGFFYFFHGT--------RQYKFDPKTKRIL 436 (450)
T ss_dssp EEEEEETTTTEECSSCSEEHHH-HSTTSCSCCSEEEEETTEEEEEETT--------EEEEEETTTTEEE
T ss_pred EEEEEeCCCccccCCCCcchhh-cCCCCCCCccEEEEcCCeEEEEeCC--------EEEEEECCcceEe
Confidence 7899997654321 1110 0011222334555578899999774 3799998776543
No 185
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=51.22 E-value=1.5e+02 Score=27.20 Aligned_cols=148 Identities=13% Similarity=0.006 Sum_probs=68.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++++++.|+.+ ..+.+||..+.+-...-.. ....-.++.+ ++.+++.|+.++ .+.+
T Consensus 66 ~~~~l~s~s~d-----------~~i~vwd~~~~~~~~~~~~-----h~~~v~~~~~~~~~~~l~sgs~D~------~v~l 123 (304)
T 2ynn_A 66 RKNWIIVGSDD-----------FRIRVFNYNTGEKVVDFEA-----HPDYIRSIAVHPTKPYVLSGSDDL------TVKL 123 (304)
T ss_dssp GGTEEEEEETT-----------SEEEEEETTTCCEEEEEEC-----CSSCEEEEEECSSSSEEEEEETTS------CEEE
T ss_pred CCCEEEEECCC-----------CEEEEEECCCCcEEEEEeC-----CCCcEEEEEEcCCCCEEEEECCCC------eEEE
Confidence 45666777742 3588899887753222111 1111222222 566777777654 3677
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGD 194 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~ 194 (473)
||..+.. ...... ......-.+++.. ++.+++.|+.+ ..+.+||+.+..-......+ ..+ .....
T Consensus 124 Wd~~~~~-~~~~~~--~~h~~~v~~v~~~p~~~~~l~sgs~D------~~v~iwd~~~~~~~~~~~~~---~~~-~v~~~ 190 (304)
T 2ynn_A 124 WNWENNW-ALEQTF--EGHEHFVMCVAFNPKDPSTFASGCLD------RTVKVWSLGQSTPNFTLTTG---QER-GVNYV 190 (304)
T ss_dssp EEGGGTT-EEEEEE--CCCCSCEEEEEECTTCTTEEEEEETT------SEEEEEETTCSSCSEEEECC---CTT-CEEEE
T ss_pred EECCCCc-chhhhh--cccCCcEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCccceeccC---CcC-cEEEE
Confidence 7876542 211110 0111111222332 34577777763 24788887654321111111 111 11222
Q ss_pred EeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 195 CLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 195 ~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
.+....++.+++.|+.+. .+.++|...
T Consensus 191 ~~~~~~~~~~l~s~s~D~------~i~iWd~~~ 217 (304)
T 2ynn_A 191 DYYPLPDKPYMITASDDL------TIKIWDYQT 217 (304)
T ss_dssp EECCSTTCCEEEEEETTS------EEEEEETTT
T ss_pred EEEEcCCCCEEEEEcCCC------eEEEEeCCC
Confidence 222223556777777654 356666554
No 186
>2gop_A Trilobed protease; beta propeller, open velcro, hydrolase; 2.00A {Pyrococcus furiosus}
Probab=50.52 E-value=1.5e+02 Score=27.25 Aligned_cols=106 Identities=15% Similarity=0.127 Sum_probs=56.5
Q ss_pred eeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCc
Q 011998 59 YYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 137 (473)
Q Consensus 59 ~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R 137 (473)
....+|++|..+..-..+. . ....... +++.+++....... ....+|++|+.+.+...+.. .+.
T Consensus 41 ~~~~l~~~d~~~~~~~~l~--------~-~~~~~~SpDg~~la~~~~~~~~-~~~~l~~~~~~~g~~~~l~~---~~~-- 105 (347)
T 2gop_A 41 YENTIVIENLKNNARRFIE--------N-ATMPRISPDGKKIAFMRANEEK-KVSEIWVADLETLSSKKILE---AKN-- 105 (347)
T ss_dssp EEEEEEEEETTTCCEEEEE--------S-CEEEEECTTSSEEEEEEEETTT-TEEEEEEEETTTTEEEEEEE---ESE--
T ss_pred ccceEEEEeCCCCceEEcc--------c-CCCeEECCCCCEEEEEEeccCC-CcceEEEEECCCCceEEEEc---CCC--
Confidence 4678999999988765551 1 1122222 45444443322211 24569999999888777653 221
Q ss_pred ceeEEEEE-CCEEEEEecccC----------------CC-----CccccEEEEeCCCCcE-EEEee
Q 011998 138 AGHSTVAF-GKNLFVFGGFTD----------------SQ-----NLYDDLYMIDVDSGLW-TKVIT 180 (473)
Q Consensus 138 ~~hs~~~~-~~~LyV~GG~~~----------------~~-----~~~ndv~~yd~~t~~W-~~v~~ 180 (473)
....... +++.+++..... .+ .....++++|+.++.. +.+..
T Consensus 106 -~~~~~wspdg~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~d~~~~~~~~~l~~ 170 (347)
T 2gop_A 106 -IRSLEWNEDSRKLLIVGFKRREDEDFIFEDDVPAWFDDLGFFDGEKTTFWIFDTESEEVIEEFEK 170 (347)
T ss_dssp -EEEEEECTTSSEEEEEEECCCC---------CCCC---------CEEEEEEEETTTTEEEEEEEE
T ss_pred -ccceeECCCCCEEEEEEccCCCcCCcEEEcccceeecCcccccCccceEEEEECCCCeEEeeecC
Confidence 2222222 444444433210 00 1135699999998877 65554
No 187
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=49.65 E-value=1.4e+02 Score=33.64 Aligned_cols=145 Identities=10% Similarity=-0.041 Sum_probs=70.2
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
+++.++.||.+ ..+.+||..+.....+... ...-.++....+..++.|+.+ ..+.+||
T Consensus 1014 dg~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~-----~~~v~~~~~~~~~~l~~~~~d------g~v~vwd 1071 (1249)
T 3sfz_A 1014 DGKTLISSSED-----------SVIQVWNWQTGDYVFLQAH-----QETVKDFRLLQDSRLLSWSFD------GTVKVWN 1071 (1249)
T ss_dssp SSSCEEEECSS-----------SBEEEEETTTTEEECCBCC-----SSCEEEEEECSSSEEEEEESS------SEEEEEE
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCceEEEecC-----CCcEEEEEEcCCCcEEEEECC------CcEEEEE
Confidence 45666677642 3588999998876543221 111222333333344555543 3578899
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEecc
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDP 198 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~ 198 (473)
..+.+-...-. .....-...+..-++++++.|+.+ ..+.+||+.+..- +... ........++.+
T Consensus 1072 ~~~~~~~~~~~---~~~~~v~~~~~s~d~~~l~s~s~d------~~v~iwd~~~~~~--~~~l---~~h~~~v~~~~~-- 1135 (1249)
T 3sfz_A 1072 VITGRIERDFT---CHQGTVLSCAISSDATKFSSTSAD------KTAKIWSFDLLSP--LHEL---KGHNGCVRCSAF-- 1135 (1249)
T ss_dssp TTTTCCCEEEE---CCSSCCCCEEECSSSSSCEEECCS------SCCCEECSSSSSC--SBCC---CCCSSCEEEEEE--
T ss_pred CCCCceeEEEc---ccCCcEEEEEECCCCCEEEEEcCC------CcEEEEECCCcce--eeee---ccCCCcEEEEEE--
Confidence 87765332211 011111112222345566676652 2367777765431 1111 111111122222
Q ss_pred ccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 199 LKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 199 ~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
..++.+++.|+.++. +.+++...
T Consensus 1136 s~dg~~lat~~~dg~------i~vwd~~~ 1158 (1249)
T 3sfz_A 1136 SLDGILLATGDDNGE------IRIWNVSD 1158 (1249)
T ss_dssp CSSSSEEEEEETTSC------CCEEESSS
T ss_pred CCCCCEEEEEeCCCE------EEEEECCC
Confidence 246777888876653 44555544
No 188
>2hes_X YDR267CP; beta-propeller, WD40 repeat, biosynthetic protein; 1.70A {Saccharomyces cerevisiae}
Probab=49.57 E-value=1.6e+02 Score=27.28 Aligned_cols=71 Identities=14% Similarity=0.219 Sum_probs=39.0
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCC--CCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeC
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDT--LTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDV 170 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t--~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~ 170 (473)
++++++.|+.++ .+.+||+.. ..+..+.. +......-..+.+ ++.+++.|+.+ ..+.+||.
T Consensus 118 ~g~~las~s~D~------~v~iwd~~~~~~~~~~~~~---~~~h~~~v~~v~~~p~~~~l~s~s~D------~~i~iW~~ 182 (330)
T 2hes_X 118 DGYYLATCSRDK------SVWIWETDESGEEYECISV---LQEHSQDVKHVIWHPSEALLASSSYD------DTVRIWKD 182 (330)
T ss_dssp TSCEEEEEETTS------CEEEEECCTTCCCCEEEEE---ECCCSSCEEEEEECSSSSEEEEEETT------SCEEEEEE
T ss_pred CCCEEEEEeCCC------EEEEEeccCCCCCeEEEEE---eccCCCceEEEEECCCCCEEEEEcCC------CeEEEEEC
Confidence 567777777654 367788732 34444432 1111111222233 35577777763 23778888
Q ss_pred CCCcEEEEee
Q 011998 171 DSGLWTKVIT 180 (473)
Q Consensus 171 ~t~~W~~v~~ 180 (473)
.+..|+.+..
T Consensus 183 ~~~~~~~~~~ 192 (330)
T 2hes_X 183 YDDDWECVAV 192 (330)
T ss_dssp ETTEEEEEEE
T ss_pred CCCCeeEEEE
Confidence 7777766654
No 189
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=49.42 E-value=1.7e+02 Score=27.34 Aligned_cols=104 Identities=13% Similarity=0.133 Sum_probs=54.2
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+..-...... +.+......... ++.+++.|+.+ ..+.+
T Consensus 111 ~~~~l~s~~~d-----------~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~------~~v~~ 170 (408)
T 4a11_B 111 DTGMFTSSSFD-----------KTLKVWDTNTLQTADVFNF---EETVYSHHMSPVSTKHCLVAVGTRG------PKVQL 170 (408)
T ss_dssp CTTCEEEEETT-----------SEEEEEETTTTEEEEEEEC---SSCEEEEEECSSCSSCCEEEEEESS------SSEEE
T ss_pred CCcEEEEEeCC-----------CeEEEeeCCCCccceeccC---CCceeeeEeecCCCCCcEEEEEcCC------CeEEE
Confidence 34577777742 4688999988765544332 222222222111 34477777654 35788
Q ss_pred EECCCCCEEEeeCCCCCCCCccee-EEEEE-CCE-EEEEecccCCCCccccEEEEeCCCC
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGH-STVAF-GKN-LFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~h-s~~~~-~~~-LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
||+.+.+....- ......- +++.. ++. +++.|+.+ ..+.+||+.+.
T Consensus 171 ~d~~~~~~~~~~-----~~~~~~v~~~~~~~~~~~ll~~~~~d------g~i~i~d~~~~ 219 (408)
T 4a11_B 171 CDLKSGSCSHIL-----QGHRQEILAVSWSPRYDYILATASAD------SRVKLWDVRRA 219 (408)
T ss_dssp EESSSSCCCEEE-----CCCCSCEEEEEECSSCTTEEEEEETT------SCEEEEETTCS
T ss_pred EeCCCcceeeee-----cCCCCcEEEEEECCCCCcEEEEEcCC------CcEEEEECCCC
Confidence 898766432221 1111112 22222 233 67777752 23888888664
No 190
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=49.29 E-value=2.2e+02 Score=28.56 Aligned_cols=110 Identities=11% Similarity=0.065 Sum_probs=56.0
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEee-cCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRAT-TSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~-~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
+..++.|+.+ ..+.+||+.+.+....- ................ ++.+++.|+.+ ..+.+||
T Consensus 219 ~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d------~~i~~wd 280 (615)
T 1pgu_A 219 GEFVITVGSD-----------RKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGAD------ATIRVWD 280 (615)
T ss_dssp CCEEEEEETT-----------CCEEEEETTTCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETT------SEEEEEE
T ss_pred CCEEEEEeCC-----------CeEEEEECCCCCEeEEecccccccCCceEEEEEc-CCCEEEEEcCC------CcEEEEE
Confidence 5677777742 36889999887654332 1000011111111122 77777777754 4578899
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+.+.+....-.....+......++...++..++.|+.. ..+.+||+.+.
T Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~------g~i~~~d~~~~ 329 (615)
T 1pgu_A 281 VTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLD------GTLNFYELGHD 329 (615)
T ss_dssp TTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETT------SCEEEEETTEE
T ss_pred CCCCcEEEEEcCCCCcccCceeEEEeCCCCeEEEEECC------CCEEEEECCCC
Confidence 88776543322111111112222222255566666652 34888888763
No 191
>1gen_A Gelatinase A; hydrolase, hemopexin domain, metalloprotease, hydrolase (metalloprotease); 2.15A {Homo sapiens} SCOP: b.66.1.1 PDB: 1rtg_A
Probab=49.27 E-value=1.5e+02 Score=26.77 Aligned_cols=152 Identities=16% Similarity=0.134 Sum_probs=75.9
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCC-eEE--EeecCC-CCCCCceeeEEEEE--CCEEEEEeCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWK--RATTSG-NPPSARDSHTCSSW--KNKIIVIGGEDGH 107 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~--~l~~~g-~~P~~R~~hs~~~~--~~~IyV~GG~~~~ 107 (473)
+++.+++.+|+|=|. .+|+++.... ... .+...- ..|. .--++... ++++|+|=|
T Consensus 35 Ai~~~~g~~~fFkg~-------------~~Wr~~~~~~~~~~P~~I~~~wp~lp~--~IDAA~~~~~~~k~yfFkG---- 95 (218)
T 1gen_A 35 GIAQIRGEIFFFKDR-------------FIWRTVTPRDKPMGPLLVATFWPELPE--KIDAVYEAPQEEKAVFFAG---- 95 (218)
T ss_dssp EEEEETTEEEEEETT-------------EEEEESSTTSCCEEEEEGGGTCTTSCS--CCSEEEEETTTTEEEEEET----
T ss_pred EEEeCCCcEEEEECC-------------EEEEEeCCCCccCCCEEHHHhcCCCCC--CccEEEEECCCCEEEEEeC----
Confidence 556679999999883 5677765432 121 122211 1232 22233332 689999976
Q ss_pred CCccceEEEEECCCCCE---EEeeCCCCCCC-CcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEE-----
Q 011998 108 DYYLSDVHILDTDTLTW---KELNTSGMVLS-PRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT----- 176 (473)
Q Consensus 108 ~~~~ndv~~yD~~t~~W---~~l~~~g~~p~-~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~----- 176 (473)
+..|+||..+..- +.+...+ .|. ...-.++... ++++|+|-|. ..|+||..+++-.
T Consensus 96 ----~~yW~y~~~~~~~gyPk~I~~~g-~p~~~~~IDAAf~~~~~g~~YfFkG~--------~ywr~d~~~~~v~~gyPr 162 (218)
T 1gen_A 96 ----NEYWIYSASTLERGYPKPLTSLG-LPPDVQRVDAAFNWSKNKKTYIFAGD--------KFWRYNEVKKKMDPGFPK 162 (218)
T ss_dssp ----TEEEEEETTEECTTCSEEGGGGT-CCTTCCCCSEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCCE
T ss_pred ----CEEEEEcCccccCCCCccHhhcC-CCCCcCCccEEEEEcCCCeEEEEECC--------EEEEEECccccccCCCCc
Confidence 5679998521100 1111101 221 1123344443 5789999774 3899998765211
Q ss_pred EEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 177 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 177 ~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
.+.. .-...+..-.++... ..++.+|+|=| +..|.|+....
T Consensus 163 ~i~~-~w~g~p~~idaAf~~--~~~g~~YfFkg--------~~y~~~~~~~~ 203 (218)
T 1gen_A 163 LIAD-AWNAIPDNLDAVVDL--QGGGHSYFFKG--------AYYLKLENQSL 203 (218)
T ss_dssp EHHH-HSSSCCSSCSEEEEC--TTTCEEEEEET--------TEEEEEETTEE
T ss_pred chhh-ccCCCCCCCCEEEEE--cCCCcEEEEEC--------CEEEEEECCce
Confidence 1110 000112222344433 12478888855 34677776543
No 192
>4e54_B DNA damage-binding protein 2; beta barrel, double helix, DDB1:WD40 beta-barrel fold, DNA D DNA repair, HOST-virus interactions; HET: DNA 3DR; 2.85A {Homo sapiens} PDB: 3ei4_B*
Probab=49.03 E-value=1.2e+02 Score=29.55 Aligned_cols=107 Identities=13% Similarity=0.068 Sum_probs=57.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~ 115 (473)
++.+++.|+.+ ..|.+||+.+.....+.... .....-.++.+ ++.+++.|+.++ .+.
T Consensus 131 ~~~~lasGs~d-----------g~i~lWd~~~~~~~~~~~~~---gH~~~V~~l~f~p~~~~~l~s~s~D~------~v~ 190 (435)
T 4e54_B 131 HPSTVAVGSKG-----------GDIMLWNFGIKDKPTFIKGI---GAGGSITGLKFNPLNTNQFYASSMEG------TTR 190 (435)
T ss_dssp CTTCEEEEETT-----------SCEEEECSSCCSCCEEECCC---SSSCCCCEEEECSSCTTEEEEECSSS------CEE
T ss_pred CCCEEEEEeCC-----------CEEEEEECCCCCceeEEEcc---CCCCCEEEEEEeCCCCCEEEEEeCCC------EEE
Confidence 35677888742 35888888776543332210 01111122222 456777777654 367
Q ss_pred EEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 116 ILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 116 ~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+||+.+.....+..... ......++... ++.+++.|+.. ..+.+||+...
T Consensus 191 iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~g~~d------g~i~~wd~~~~ 241 (435)
T 4e54_B 191 LQDFKGNILRVFASSDT--INIWFCSLDVSASSRMVVTGDNV------GNVILLNMDGK 241 (435)
T ss_dssp EEETTSCEEEEEECCSS--CSCCCCCEEEETTTTEEEEECSS------SBEEEEESSSC
T ss_pred EeeccCCceeEEeccCC--CCccEEEEEECCCCCEEEEEeCC------CcEeeeccCcc
Confidence 88988877665543111 11111222232 45677777752 24788888654
No 193
>2aq5_A Coronin-1A; WD40 repeat, 7-bladed beta-propeller, structural protein; HET: CME; 1.75A {Mus musculus} PDB: 2b4e_A
Probab=48.63 E-value=1.8e+02 Score=27.59 Aligned_cols=148 Identities=9% Similarity=0.005 Sum_probs=71.8
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
.+.+||..+.+....-.. . .....-.+++.. ++.+++.|+.+ ..+.+||+.+.+-......+. ..
T Consensus 155 ~i~iwd~~~~~~~~~~~~-~-~~~~~v~~~~~~~~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~~~-~~ 220 (402)
T 2aq5_A 155 VILVWDVGTGAAVLTLGP-D-VHPDTIYSVDWSRDGALICTSCRD-----------KRVRVIEPRKGTVVAEKDRPH-EG 220 (402)
T ss_dssp CEEEEETTTTEEEEEECT-T-TCCSCEEEEEECTTSSCEEEEETT-----------SEEEEEETTTTEEEEEEECSS-CS
T ss_pred EEEEEECCCCCccEEEec-C-CCCCceEEEEECCCCCEEEEEecC-----------CcEEEEeCCCCceeeeeccCC-CC
Confidence 477888887765533100 0 011111222222 46667777742 468999998876443321111 11
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCE--EEeeCCCCCCCCcceeEEEEE-C-CEEEEEecccCCCC
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTW--KELNTSGMVLSPRAGHSTVAF-G-KNLFVFGGFTDSQN 160 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W--~~l~~~g~~p~~R~~hs~~~~-~-~~LyV~GG~~~~~~ 160 (473)
.+....+..-++.+++.|..... -..+.+||+.+..- .... ......-.+++.. + ..|++.|+.+
T Consensus 221 ~~~~~~~~~~~~~~l~~g~~~~~---d~~i~iwd~~~~~~~~~~~~----~~~~~~v~~~~~s~~~~~l~~~g~~d---- 289 (402)
T 2aq5_A 221 TRPVHAVFVSEGKILTTGFSRMS---ERQVALWDTKHLEEPLSLQE----LDTSSGVLLPFFDPDTNIVYLCGKGD---- 289 (402)
T ss_dssp SSCCEEEECSTTEEEEEEECTTC---CEEEEEEETTBCSSCSEEEE----CCCCSSCEEEEEETTTTEEEEEETTC----
T ss_pred CcceEEEEcCCCcEEEEeccCCC---CceEEEEcCccccCCceEEe----ccCCCceeEEEEcCCCCEEEEEEcCC----
Confidence 11222222236788777732111 25688999876542 1111 1111112223333 2 3466666542
Q ss_pred ccccEEEEeCCCCc--EEEEee
Q 011998 161 LYDDLYMIDVDSGL--WTKVIT 180 (473)
Q Consensus 161 ~~ndv~~yd~~t~~--W~~v~~ 180 (473)
..+.+||+.+.. ...+..
T Consensus 290 --g~i~i~d~~~~~~~~~~l~~ 309 (402)
T 2aq5_A 290 --SSIRYFEITSEAPFLHYLSM 309 (402)
T ss_dssp --SCEEEEEECSSTTCEEEEEE
T ss_pred --CeEEEEEecCCCcceEeecc
Confidence 248888888765 444443
No 194
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=47.36 E-value=1.9e+02 Score=27.29 Aligned_cols=104 Identities=17% Similarity=0.213 Sum_probs=56.9
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+.+++.|+.+ ..+.+||+.+.+....-.. ....-.++.+ ++.+++.|+.++ .+.+|
T Consensus 210 g~~l~sgs~D-----------g~v~~wd~~~~~~~~~~~~-----h~~~v~~v~~~p~~~~l~s~s~D~------~v~lw 267 (354)
T 2pbi_B 210 GNTFVSGGCD-----------KKAMVWDMRSGQCVQAFET-----HESDVNSVRYYPSGDAFASGSDDA------TCRLY 267 (354)
T ss_dssp CCEEEEEETT-----------SCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS------CEEEE
T ss_pred CCEEEEEeCC-----------CeEEEEECCCCcEEEEecC-----CCCCeEEEEEeCCCCEEEEEeCCC------eEEEE
Confidence 4677778752 3588899988765443221 1111222333 567778887654 36788
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
|+.+..-...-. ..........+.+ ++++++.|+.+ ..+.+||+.+..
T Consensus 268 d~~~~~~~~~~~---~~~~~~~~~~~~~s~~g~~l~~g~~d------~~i~vwd~~~~~ 317 (354)
T 2pbi_B 268 DLRADREVAIYS---KESIIFGASSVDFSLSGRLLFAGYND------YTINVWDVLKGS 317 (354)
T ss_dssp ETTTTEEEEEEC---CTTCCSCEEEEEECTTSSEEEEEETT------SCEEEEETTTCS
T ss_pred ECCCCcEEEEEc---CCCcccceeEEEEeCCCCEEEEEECC------CcEEEEECCCCc
Confidence 887765332221 1111222233333 45566666642 348889987664
No 195
>3mmy_A MRNA export factor; mRNA export, nuclear protein; HET: MES; 1.65A {Homo sapiens}
Probab=47.33 E-value=1.2e+02 Score=27.94 Aligned_cols=104 Identities=11% Similarity=0.081 Sum_probs=56.2
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
+.+++.|+.+ ..+.+||..+......... ......-.++.+ ++.+++.|+.+ ..+.+|
T Consensus 54 g~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~l~s~~~d------g~v~iw 113 (368)
T 3mmy_A 54 GNFLIAGSWA-----------NDVRCWEVQDSGQTIPKAQ---QMHTGPVLDVCWSDDGSKVFTASCD------KTAKMW 113 (368)
T ss_dssp SEEEEEEETT-----------SEEEEEEECTTSCEEEEEE---EECSSCEEEEEECTTSSEEEEEETT------SEEEEE
T ss_pred ceEEEEECCC-----------CcEEEEEcCCCCceeEEEe---ccccCCEEEEEECcCCCEEEEEcCC------CcEEEE
Confidence 3788888742 3578888876332221111 000111222233 56677777654 358889
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEE---ECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVA---FGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~---~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
|..+.+...+.. ....-.++.. -++.+++.|+.+ ..+.+||+.+.+
T Consensus 114 d~~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~ 162 (368)
T 3mmy_A 114 DLSSNQAIQIAQ-----HDAPVKTIHWIKAPNYSCVMTGSWD------KTLKFWDTRSSN 162 (368)
T ss_dssp ETTTTEEEEEEE-----CSSCEEEEEEEECSSCEEEEEEETT------SEEEEECSSCSS
T ss_pred EcCCCCceeecc-----ccCceEEEEEEeCCCCCEEEEccCC------CcEEEEECCCCc
Confidence 998887655432 1111222222 245677777752 348888887764
No 196
>2vdu_B TRNA (guanine-N(7)-)-methyltransferase- associated WD repeat protein TRM82; S-adenosyl-L-methionine, tRNA processing, phosphorylation, M7G, spout MT, WD repeat; 2.40A {Saccharomyces cerevisiae}
Probab=46.74 E-value=2.1e+02 Score=27.78 Aligned_cols=66 Identities=15% Similarity=0.124 Sum_probs=38.3
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEEC
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDT 119 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~ 119 (473)
+++++.|+.+ ..+.+||+.+.........+ ........+.. ++.+++.|+.+ ..+.+||.
T Consensus 210 ~~~l~s~~~d-----------~~i~vwd~~~~~~~~~~~~~--h~~~v~~~~~s-d~~~l~s~~~d------~~v~vwd~ 269 (450)
T 2vdu_B 210 HQFIITSDRD-----------EHIKISHYPQCFIVDKWLFG--HKHFVSSICCG-KDYLLLSAGGD------DKIFAWDW 269 (450)
T ss_dssp CEEEEEEETT-----------SCEEEEEESCTTCEEEECCC--CSSCEEEEEEC-STTEEEEEESS------SEEEEEET
T ss_pred CcEEEEEcCC-----------CcEEEEECCCCceeeeeecC--CCCceEEEEEC-CCCEEEEEeCC------CeEEEEEC
Confidence 6788888742 36888888776543221111 11112222223 67777777743 46888998
Q ss_pred CCCCEE
Q 011998 120 DTLTWK 125 (473)
Q Consensus 120 ~t~~W~ 125 (473)
.+.+..
T Consensus 270 ~~~~~~ 275 (450)
T 2vdu_B 270 KTGKNL 275 (450)
T ss_dssp TTCCEE
T ss_pred CCCcEe
Confidence 887643
No 197
>3dr2_A Exported gluconolactonase; gluconolactonase SMP-30, six-bladed-propeller dimer, vitamin C, hydrolase; 1.67A {Xanthomonas campestris PV}
Probab=46.65 E-value=92 Score=28.77 Aligned_cols=105 Identities=9% Similarity=-0.054 Sum_probs=52.3
Q ss_pred CeEEEEECCCCeEEEeecCC-CCCCCceeeEEEEE-CCEEEEE----eCCCC-------CCCccceEEEEECCCCCEEEe
Q 011998 61 NDLYILNTETFVWKRATTSG-NPPSARDSHTCSSW-KNKIIVI----GGEDG-------HDYYLSDVHILDTDTLTWKEL 127 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g-~~P~~R~~hs~~~~-~~~IyV~----GG~~~-------~~~~~ndv~~yD~~t~~W~~l 127 (473)
..+++||+. .+.+.+.... ..+..+- ..++.. ++.||+. |-... .......+++||+.+.+++.+
T Consensus 107 ~~v~~~~~~-g~~~~~~~~~~~~~~~~~-~~i~~d~dG~l~~td~~~g~~~~~~~~~~~~~~~~~~v~~~d~~~g~~~~~ 184 (305)
T 3dr2_A 107 RAITRSDAD-GQAHLLVGRYAGKRLNSP-NDLIVARDGAIWFTDPPFGLRKPSQGCPADPELAHHSVYRLPPDGSPLQRM 184 (305)
T ss_dssp TEEEEECTT-SCEEEEECEETTEECSCC-CCEEECTTSCEEEECCSGGGSCGGGSCCCCCSSSCEEEEEECSSSCCCEEE
T ss_pred CEEEEECCC-CCEEEEEeccCCCccCCC-CCEEECCCCCEEEeCcCCCccccccccccccccCCCeEEEEcCCCCcEEEE
Confidence 358888886 5666553210 0011111 123332 6788885 43211 111236799999988887766
Q ss_pred eCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCccccEEEEeCCCCc
Q 011998 128 NTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 128 ~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
. .+..+ ...+.. ++ .||+..... .....+.+++|++....
T Consensus 185 ~---~~~~p---~gl~~spdg~~lyv~~~~~-~~~~~~~i~~~~~~~~~ 226 (305)
T 3dr2_A 185 A---DLDHP---NGLAFSPDEQTLYVSQTPE-QGHGSVEITAFAWRDGA 226 (305)
T ss_dssp E---EESSE---EEEEECTTSSEEEEEECCC----CCCEEEEEEEETTE
T ss_pred e---cCCCC---cceEEcCCCCEEEEEecCC-cCCCCCEEEEEEecCCC
Confidence 4 12111 223333 33 477764321 11113569999987654
No 198
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=46.40 E-value=2.4e+02 Score=28.23 Aligned_cols=103 Identities=8% Similarity=0.087 Sum_probs=52.5
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--C-CEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--K-NKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPR 137 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~-~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R 137 (473)
..+.+||..+.+-...-.. .......-.++.+ + +.+++.|+.+ ..+.+||+.+.+....-.........
T Consensus 183 ~~v~vwd~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~~~~l~~~~~d------g~i~vwd~~~~~~~~~~~~~~~~~~~ 254 (615)
T 1pgu_A 183 GSVVFYQGPPFKFSASDRT--HHKQGSFVRDVEFSPDSGEFVITVGSD------RKISCFDGKSGEFLKYIEDDQEPVQG 254 (615)
T ss_dssp TEEEEEETTTBEEEEEECS--SSCTTCCEEEEEECSTTCCEEEEEETT------CCEEEEETTTCCEEEECCBTTBCCCS
T ss_pred CcEEEEeCCCcceeeeecc--cCCCCceEEEEEECCCCCCEEEEEeCC------CeEEEEECCCCCEeEEecccccccCC
Confidence 4688899877654332211 0110002222333 5 6777877754 35788998877654332100001111
Q ss_pred ceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEE
Q 011998 138 AGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTK 177 (473)
Q Consensus 138 ~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~ 177 (473)
.-.+++..++.+++.|+.+ ..+.+||+.+.+...
T Consensus 255 ~v~~~~~~~~~~l~~~~~d------~~i~~wd~~~~~~~~ 288 (615)
T 1pgu_A 255 GIFALSWLDSQKFATVGAD------ATIRVWDVTTSKCVQ 288 (615)
T ss_dssp CEEEEEESSSSEEEEEETT------SEEEEEETTTTEEEE
T ss_pred ceEEEEEcCCCEEEEEcCC------CcEEEEECCCCcEEE
Confidence 1122222266677777652 348899998775543
No 199
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=45.85 E-value=1.6e+02 Score=26.20 Aligned_cols=108 Identities=15% Similarity=0.129 Sum_probs=55.7
Q ss_pred EECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEE
Q 011998 37 LVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 37 ~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~ 115 (473)
.-++. ++.|+.+ ..+.+||..+.+-...-.. .. ..-.+++.. +++ ++.|+.+ ..+.
T Consensus 193 ~~~~~-~~~~~~d-----------g~i~i~d~~~~~~~~~~~~---~~-~~i~~~~~~~~~~-l~~~~~d------g~v~ 249 (313)
T 3odt_A 193 VDDGH-FISCSND-----------GLIKLVDMHTGDVLRTYEG---HE-SFVYCIKLLPNGD-IVSCGED------RTVR 249 (313)
T ss_dssp EETTE-EEEEETT-----------SEEEEEETTTCCEEEEEEC---CS-SCEEEEEECTTSC-EEEEETT------SEEE
T ss_pred cCCCe-EEEccCC-----------CeEEEEECCchhhhhhhhc---CC-ceEEEEEEecCCC-EEEEecC------CEEE
Confidence 34566 6666632 3688999887653322211 11 111222222 443 5566643 4588
Q ss_pred EEECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 116 ILDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 116 ~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
+||+.+.+....-. .+.. .-.+++.. +++ ++.|+.+ ..+.+||+.+..|...
T Consensus 250 iwd~~~~~~~~~~~---~~~~-~i~~~~~~~~~~-~~~~~~d------g~i~iw~~~~~~~~~~ 302 (313)
T 3odt_A 250 IWSKENGSLKQVIT---LPAI-SIWSVDCMSNGD-IIVGSSD------NLVRIFSQEKSRWASE 302 (313)
T ss_dssp EECTTTCCEEEEEE---CSSS-CEEEEEECTTSC-EEEEETT------SCEEEEESCGGGCCC-
T ss_pred EEECCCCceeEEEe---ccCc-eEEEEEEccCCC-EEEEeCC------CcEEEEeCCCCceeeh
Confidence 99988877544332 1111 11222222 445 4456642 3488999988776543
No 200
>1w6s_A Methanol dehydrogenase subunit 1; anisotropic, electron transfer, oxidoreductase, calcium- binding, methanol utilization, PQQ; HET: PQQ; 1.2A {Methylobacterium extorquens} SCOP: b.70.1.1 PDB: 1h4i_A* 1h4j_A* 2d0v_A* 1lrw_A*
Probab=45.55 E-value=1e+02 Score=32.48 Aligned_cols=126 Identities=15% Similarity=0.182 Sum_probs=68.7
Q ss_pred eEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEEC-CCC--eEEEeecCCC--CCCC---ceeeEEEE--ECCE----E
Q 011998 33 HSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNT-ETF--VWKRATTSGN--PPSA---RDSHTCSS--WKNK----I 98 (473)
Q Consensus 33 hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~-~t~--~W~~l~~~g~--~P~~---R~~hs~~~--~~~~----I 98 (473)
.+.++.++.||+.+.. ...++.||. .+. .|+.-..... .+.. ....+.++ .+++ |
T Consensus 56 ~tP~v~~g~vyv~~~~-----------~~~v~AlD~~~tG~~lW~~~~~~~~~~~~~~~~~~~~~g~av~p~~g~~~~rV 124 (599)
T 1w6s_A 56 GAPLVVDGKMYIHTSF-----------PNNTFALGLDDPGTILWQDKPKQNPAARAVACCDLVNRGLAYWPGDGKTPALI 124 (599)
T ss_dssp SCCEEETTEEEEECST-----------TTCEEEEETTCTTSEEEEECCCCCGGGGGGCSSCSCCCCCEEECCCSSSCCEE
T ss_pred eccEEECCEEEEEeCC-----------CCEEEEEeCCCCCcEEEEECCCCCccccccccccccccceEEEecCCcceeEE
Confidence 3455679999998762 136899998 666 5876432210 0000 11123344 4666 7
Q ss_pred EEEeCCCCCCCccceEEEEECCCCC--EEEeeCCCCCCCC-cceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCc-
Q 011998 99 IVIGGEDGHDYYLSDVHILDTDTLT--WKELNTSGMVLSP-RAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL- 174 (473)
Q Consensus 99 yV~GG~~~~~~~~ndv~~yD~~t~~--W~~l~~~g~~p~~-R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~- 174 (473)
|+... -..++.+|..+.+ |+.-.. ..... ....+-++.++.+|+-.+. ........++.||.++++
T Consensus 125 ~v~t~-------dg~l~AlDa~TG~~~W~~~~~--~~~~~~~~~ssP~v~~g~V~vg~~g-~e~g~~g~v~A~D~~TG~~ 194 (599)
T 1w6s_A 125 LKTQL-------DGNVAALNAETGETVWKVENS--DIKVGSTLTIAPYVVKDKVIIGSSG-AELGVRGYLTAYDVKTGEQ 194 (599)
T ss_dssp EEECT-------TSEEEEEETTTCCEEEEEECC--CGGGTCBCCSCCEEETTEEEECCBC-GGGTCCCEEEEEETTTCCE
T ss_pred EEEcC-------CCEEEEEECCCCCEEEeecCC--CCCccceeecCCEEECCEEEEEecc-cccCCCCeEEEEECCCCcE
Confidence 77432 2468999988776 775422 10000 1112234567877664321 111134569999998764
Q ss_pred -EEEEe
Q 011998 175 -WTKVI 179 (473)
Q Consensus 175 -W~~v~ 179 (473)
|+.-.
T Consensus 195 ~W~~~~ 200 (599)
T 1w6s_A 195 VWRAYA 200 (599)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 87543
No 201
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=44.82 E-value=2.3e+02 Score=27.68 Aligned_cols=18 Identities=22% Similarity=0.080 Sum_probs=13.0
Q ss_pred eeeEEEEE-CCEEEEEeCC
Q 011998 87 DSHTCSSW-KNKIIVIGGE 104 (473)
Q Consensus 87 ~~hs~~~~-~~~IyV~GG~ 104 (473)
..|+++.. ++.+|.+|-.
T Consensus 234 ~~ht~~l~~~G~v~~wG~n 252 (406)
T 4d9s_A 234 WRHTISVSYSGALYTYGWS 252 (406)
T ss_dssp SSEEEEEETTCCEEEEECC
T ss_pred CCcEEEEcCCCCEEEeeCC
Confidence 45676655 7899999943
No 202
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=44.68 E-value=3.8e+02 Score=30.04 Aligned_cols=144 Identities=14% Similarity=0.102 Sum_probs=73.9
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
+++.++.||.+ ..+.+||..+.+-...-.. ....-.++.+ ++.+++.|+.+ ..+.+
T Consensus 626 ~~~~l~s~~~d-----------~~i~vw~~~~~~~~~~~~~-----h~~~v~~~~~s~~~~~l~s~~~d------~~v~v 683 (1249)
T 3sfz_A 626 DGQRIASCGAD-----------KTLQVFKAETGEKLLDIKA-----HEDEVLCCAFSSDDSYIATCSAD------KKVKI 683 (1249)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETT------SEEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCCEEEEecc-----CCCCEEEEEEecCCCEEEEEeCC------CeEEE
Confidence 46677777742 3588999988764332211 1112223333 56777777743 35889
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-C--CE-EEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceee
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-G--KN-LFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 192 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~--~~-LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~ 192 (473)
||..+.+....-. .....-.++.+ . +. +++.|+. + ..+.+||+.+......-.. .... ..
T Consensus 684 wd~~~~~~~~~~~-----~~~~~v~~~~~~~~~~~~~l~sg~~-d-----~~v~vwd~~~~~~~~~~~~---h~~~--v~ 747 (1249)
T 3sfz_A 684 WDSATGKLVHTYD-----EHSEQVNCCHFTNKSNHLLLATGSN-D-----FFLKLWDLNQKECRNTMFG---HTNS--VN 747 (1249)
T ss_dssp EETTTCCEEEEEE-----CCSSCEEEEEECSSSSCCEEEEEET-T-----SCEEEEETTSSSEEEEECC---CSSC--EE
T ss_pred EECCCCceEEEEc-----CCCCcEEEEEEecCCCceEEEEEeC-C-----CeEEEEECCCcchhheecC---CCCC--EE
Confidence 9998876543321 11112222223 2 33 5555554 2 3488999988764433221 1111 12
Q ss_pred EEEeccccCCEEEEEcccCCCCCccCcEEEEEcccc
Q 011998 193 GDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLV 228 (473)
Q Consensus 193 a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~ 228 (473)
++.+. .++.+++.|+.++ .+..+|....
T Consensus 748 ~~~~s--p~~~~l~s~s~dg------~v~vwd~~~~ 775 (1249)
T 3sfz_A 748 HCRFS--PDDELLASCSADG------TLRLWDVRSA 775 (1249)
T ss_dssp EEEEC--SSTTEEEEEESSS------EEEEEEGGGT
T ss_pred EEEEe--cCCCEEEEEECCC------eEEEEeCCCC
Confidence 22222 3556677776554 2555665443
No 203
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=44.59 E-value=1.5e+02 Score=26.29 Aligned_cols=104 Identities=10% Similarity=0.209 Sum_probs=56.9
Q ss_pred ECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE---EEeecCC-CCCCCceeeEEEEE--CCEEEEEeCCCCCCCcc
Q 011998 38 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSG-NPPSARDSHTCSSW--KNKIIVIGGEDGHDYYL 111 (473)
Q Consensus 38 ~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g-~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ 111 (473)
.++++|+|-| +.+|+|+..+... +.+...+ ..|..+ --++... ++++|+|=|
T Consensus 60 ~~g~~yfFkg-------------~~yw~~~~~~~~~gyPk~I~~~~~glP~~~-IDAA~~~~~~g~~yfFkG-------- 117 (196)
T 3c7x_A 60 KDGKFVFFKG-------------DKHWVFDEASLEPGYPKHIKELGRGLPTDK-IDAALFWMPNGKTYFFRG-------- 117 (196)
T ss_dssp TTSCEEEEET-------------TEEEEEETTEECTTCSEEGGGTCBSCCSSC-CSEEEEETTTTEEEEEET--------
T ss_pred CCCcEEEecC-------------CEEEEEeCCcccCCCCeEhhhcCCCCCCCc-ccEEEEEccCCEEEEEEC--------
Confidence 4688999988 3579998542110 1222211 123222 2233333 589999977
Q ss_pred ceEEEEECCCCCEEE-----eeCCCCCCCCcceeEEEEE-CC-EEEEEecccCCCCccccEEEEeCCCC
Q 011998 112 SDVHILDTDTLTWKE-----LNTSGMVLSPRAGHSTVAF-GK-NLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 112 ndv~~yD~~t~~W~~-----l~~~g~~p~~R~~hs~~~~-~~-~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+..|+||..+++-.. +..- +..|..-.++... ++ ++|+|-|. ..|+||..+.
T Consensus 118 ~~yw~yd~~~~~v~~gyPk~i~~~--~gip~~idaAf~~~~~~~~YfFkg~--------~y~r~d~~~~ 176 (196)
T 3c7x_A 118 NKYYRFNEELRAVDSEYPKNIKVW--EGIPESPRGSFMGSDEVFTYFYKGN--------KYWKFNNQKL 176 (196)
T ss_dssp TEEEEEETTTTEECTTCSEEGGGS--BTCCSSCSEEEECTTSSEEEEEETT--------EEEEEETTTT
T ss_pred CEEEEEeCCcccccCCCCccHHHC--CCcCCCcceeEEecCCCEEEEEECC--------EEEEEECCcc
Confidence 467999987654211 1110 1112223444444 34 89999774 3799998765
No 204
>2xbg_A YCF48-like protein; photosynthesis, photosystem II, beta-propeller, assembly FAC; 1.50A {Thermosynechococcus elongatus}
Probab=43.25 E-value=2.2e+02 Score=26.82 Aligned_cols=156 Identities=9% Similarity=0.093 Sum_probs=78.0
Q ss_pred CCCeEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEE
Q 011998 13 SSHTWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTC 91 (473)
Q Consensus 13 ~t~~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~ 91 (473)
...+|+.+.. |....-.++... .+.+|++|-. .-+++-.-.-.+|+.+......+ .....++
T Consensus 23 ~g~~W~~~~~----~~~~~~~~v~~~~~~~~~~~G~~------------g~i~~s~DgG~tW~~~~~~~~~~-~~~~~~i 85 (327)
T 2xbg_A 23 DYNPWEAIQL----PTTATILDMSFIDRHHGWLVGVN------------ATLMETRDGGQTWEPRTLVLDHS-DYRFNSV 85 (327)
T ss_dssp SSCCEEEEEC----SCSSCEEEEEESSSSCEEEEETT------------TEEEEESSTTSSCEECCCCCSCC-CCEEEEE
T ss_pred CCCCceEeec----CCCCcEEEEEECCCCcEEEEcCC------------CeEEEeCCCCCCCeECCCCCCCC-CccEEEE
Confidence 3468998742 222222333333 4678886542 12444433446899885421111 1223344
Q ss_pred EEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEE-EECCEEEEEecccCCCCccccEEEEeC
Q 011998 92 SSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTV-AFGKNLFVFGGFTDSQNLYDDLYMIDV 170 (473)
Q Consensus 92 ~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~-~~~~~LyV~GG~~~~~~~~ndv~~yd~ 170 (473)
....+.+|++|-. ..+++-.=....|+.+.....+| -.....+ .-++.+|+.|.. ..+++-.-
T Consensus 86 ~~~~~~~~~~g~~-------g~i~~S~DgG~tW~~~~~~~~~~--~~~~~i~~~~~~~~~~~~~~-------g~v~~S~D 149 (327)
T 2xbg_A 86 SFQGNEGWIVGEP-------PIMLHTTDGGQSWSQIPLDPKLP--GSPRLIKALGNGSAEMITNV-------GAIYRTKD 149 (327)
T ss_dssp EEETTEEEEEEET-------TEEEEESSTTSSCEECCCCTTCS--SCEEEEEEEETTEEEEEETT-------CCEEEESS
T ss_pred EecCCeEEEEECC-------CeEEEECCCCCCceECccccCCC--CCeEEEEEECCCCEEEEeCC-------ccEEEEcC
Confidence 4446788887631 23444322357899987421122 1123333 346778887642 12555443
Q ss_pred CCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEc
Q 011998 171 DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 171 ~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~G 208 (473)
...+|+.+... .....+..... .++.++++|
T Consensus 150 gG~tW~~~~~~----~~~~~~~~~~~---~~~~~~~~g 180 (327)
T 2xbg_A 150 SGKNWQALVQE----AIGVMRNLNRS---PSGEYVAVS 180 (327)
T ss_dssp TTSSEEEEECS----CCCCEEEEEEC---TTSCEEEEE
T ss_pred CCCCCEEeecC----CCcceEEEEEc---CCCcEEEEE
Confidence 45689998752 12222332222 356677665
No 205
>1erj_A Transcriptional repressor TUP1; beta-propeller, transcription inhibitor; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1
Probab=43.04 E-value=2.3e+02 Score=27.05 Aligned_cols=107 Identities=16% Similarity=0.123 Sum_probs=52.5
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++..++.|+.+ ..+.+||+.+.+....... . ..-.+++.. ++.+++.|+.++ .+.+
T Consensus 176 ~~~~l~s~s~d-----------~~v~iwd~~~~~~~~~~~~---~--~~v~~~~~~~~~~~~l~~~s~d~------~v~i 233 (393)
T 1erj_A 176 SGDKLVSGSGD-----------RTVRIWDLRTGQCSLTLSI---E--DGVTTVAVSPGDGKYIAAGSLDR------AVRV 233 (393)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTTEEEEEEEC---S--SCEEEEEECSTTCCEEEEEETTS------CEEE
T ss_pred CCCEEEEecCC-----------CcEEEEECCCCeeEEEEEc---C--CCcEEEEEECCCCCEEEEEcCCC------cEEE
Confidence 34555666632 3588899988765433221 1 111222222 567888887654 4778
Q ss_pred EECCCCCEEEeeCCCC-CCCC-cceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 117 LDTDTLTWKELNTSGM-VLSP-RAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~-~p~~-R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
||..+..-...-.... .... ...-.++.+ ++++++.|+.+ ..+.+||+.+.
T Consensus 234 wd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~~~g~~l~s~s~d------~~v~~wd~~~~ 288 (393)
T 1erj_A 234 WDSETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLD------RSVKLWNLQNA 288 (393)
T ss_dssp EETTTCCEEEEEC------CCCSSCEEEEEECTTSSEEEEEETT------SEEEEEEC---
T ss_pred EECCCCcEEEeecccccCCCCCCCCEEEEEECCCCCEEEEEeCC------CEEEEEECCCC
Confidence 8988776433221000 0001 111122222 45566777652 24777887653
No 206
>3k26_A Polycomb protein EED; WD40, structural genomics, NPPSFA, national project on prote structural and functional analysis, structural genomics CON SGC; HET: M3L; 1.58A {Homo sapiens} PDB: 3jzn_A* 3k27_A* 3jpx_A* 3jzg_A* 3jzh_A* 3iiw_A* 3ijc_A* 3iiy_A* 3ij0_A* 3ij1_A* 2qxv_A
Probab=42.90 E-value=2e+02 Score=26.31 Aligned_cols=104 Identities=13% Similarity=0.123 Sum_probs=55.5
Q ss_pred CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE---CCEEEEEeCCCCCCCccceEEE
Q 011998 40 KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW---KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 40 ~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
+.+++.|+.+ ..+.+||+.+.+-...-.. . ...-.+..+ ++.+++.|+.++ .+.+
T Consensus 85 ~~~l~~~~~d-----------g~i~v~d~~~~~~~~~~~~---~--~~~i~~~~~~~~~~~~l~s~~~dg------~i~i 142 (366)
T 3k26_A 85 HPLLAVAGSR-----------GIIRIINPITMQCIKHYVG---H--GNAINELKFHPRDPNLLLSVSKDH------ALRL 142 (366)
T ss_dssp CEEEEEEETT-----------CEEEEECTTTCCEEEEEES---C--CSCEEEEEECSSCTTEEEEEETTS------CEEE
T ss_pred CCEEEEecCC-----------CEEEEEEchhceEeeeecC---C--CCcEEEEEECCCCCCEEEEEeCCC------eEEE
Confidence 5677787742 3688899887654322211 1 111222222 567778877543 4788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
||..+.+-...-. ........-..+.+ ++..++.|+.+ ..+.+||+.+.
T Consensus 143 wd~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~i~d~~~~ 193 (366)
T 3k26_A 143 WNIQTDTLVAIFG--GVEGHRDEVLSADYDLLGEKIMSCGMD------HSLKLWRINSK 193 (366)
T ss_dssp EETTTTEEEEEEC--STTSCSSCEEEEEECTTSSEEEEEETT------SCEEEEESCSH
T ss_pred EEeecCeEEEEec--ccccccCceeEEEECCCCCEEEEecCC------CCEEEEECCCC
Confidence 9998776443321 01112222222222 34566777652 24888888764
No 207
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=42.42 E-value=2.2e+02 Score=26.63 Aligned_cols=71 Identities=10% Similarity=-0.034 Sum_probs=33.8
Q ss_pred CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCC-CCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEE
Q 011998 146 GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGE-GPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLY 224 (473)
Q Consensus 146 ~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~-~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld 224 (473)
++ +++.|+.. ..+.+||+.+.+....-.... .........+..+. .++.+++.|+.+. ....+.++|
T Consensus 197 ~~-~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~--~~~~~l~~~~~d~---~~g~i~i~d 264 (397)
T 1sq9_A 197 RG-LIATGFNN------GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFS--PQGSLLAIAHDSN---SFGCITLYE 264 (397)
T ss_dssp TS-EEEEECTT------SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEEC--SSTTEEEEEEEET---TEEEEEEEE
T ss_pred Cc-eEEEEeCC------CcEEEEECCCCceeEEEeccccccccCCccceEEEC--CCCCEEEEEecCC---CCceEEEEE
Confidence 35 66666642 348899998765433222100 00001112223332 3566677776541 113477777
Q ss_pred cccc
Q 011998 225 TGLV 228 (473)
Q Consensus 225 ~~~~ 228 (473)
....
T Consensus 265 ~~~~ 268 (397)
T 1sq9_A 265 TEFG 268 (397)
T ss_dssp TTTC
T ss_pred CCCC
Confidence 6643
No 208
>3odt_A Protein DOA1; ubiquitin, nuclear protein; HET: MSE MES; 1.35A {Saccharomyces cerevisiae}
Probab=41.89 E-value=1.9e+02 Score=25.77 Aligned_cols=106 Identities=11% Similarity=0.030 Sum_probs=53.7
Q ss_pred ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 94 WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 94 ~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
-++. ++.|+.+ ..+.+||..+.+-...-. .....-.+++...+..++.|+.. ..+.+||+.+.
T Consensus 194 ~~~~-~~~~~~d------g~i~i~d~~~~~~~~~~~----~~~~~i~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 256 (313)
T 3odt_A 194 DDGH-FISCSND------GLIKLVDMHTGDVLRTYE----GHESFVYCIKLLPNGDIVSCGED------RTVRIWSKENG 256 (313)
T ss_dssp ETTE-EEEEETT------SEEEEEETTTCCEEEEEE----CCSSCEEEEEECTTSCEEEEETT------SEEEEECTTTC
T ss_pred CCCe-EEEccCC------CeEEEEECCchhhhhhhh----cCCceEEEEEEecCCCEEEEecC------CEEEEEECCCC
Confidence 3667 6666643 358889988765332211 01111222333323245566542 34899999888
Q ss_pred cEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccce
Q 011998 174 LWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVNE 230 (473)
Q Consensus 174 ~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~w 230 (473)
+....-.. +... ..++.+. .+++ ++.|+.+. .+.+++....++
T Consensus 257 ~~~~~~~~---~~~~--i~~~~~~--~~~~-~~~~~~dg------~i~iw~~~~~~~ 299 (313)
T 3odt_A 257 SLKQVITL---PAIS--IWSVDCM--SNGD-IIVGSSDN------LVRIFSQEKSRW 299 (313)
T ss_dssp CEEEEEEC---SSSC--EEEEEEC--TTSC-EEEEETTS------CEEEEESCGGGC
T ss_pred ceeEEEec---cCce--EEEEEEc--cCCC-EEEEeCCC------cEEEEeCCCCce
Confidence 65544332 1111 2222232 3455 44566544 377777766554
No 209
>2pbi_B Guanine nucleotide-binding protein subunit beta 5; helix WRAP, RGS domain, DEP domain, DHEX domain, GGL domain, propeller, signaling protein; 1.95A {Mus musculus}
Probab=40.76 E-value=2.4e+02 Score=26.56 Aligned_cols=135 Identities=13% Similarity=0.089 Sum_probs=68.0
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE----CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSP 136 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~ 136 (473)
..+.+||+.+.+....-.. ... .-.+..+ ++.+++.|+.++ .+.+||+.+.+....-. ...
T Consensus 176 ~~v~lwd~~~~~~~~~~~~---h~~--~v~~~~~~~~~~g~~l~sgs~Dg------~v~~wd~~~~~~~~~~~----~h~ 240 (354)
T 2pbi_B 176 GTCALWDVESGQLLQSFHG---HGA--DVLCLDLAPSETGNTFVSGGCDK------KAMVWDMRSGQCVQAFE----THE 240 (354)
T ss_dssp SEEEEEETTTCCEEEEEEC---CSS--CEEEEEECCCSSCCEEEEEETTS------CEEEEETTTCCEEEEEC----CCS
T ss_pred CcEEEEeCCCCeEEEEEcC---CCC--CeEEEEEEeCCCCCEEEEEeCCC------eEEEEECCCCcEEEEec----CCC
Confidence 3578889888764332211 011 1112222 356788887654 47889988877544321 011
Q ss_pred cceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCC
Q 011998 137 RAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLE 215 (473)
Q Consensus 137 R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~ 215 (473)
..-.+++.. ++.+++.|+.+ ..+.+||+.+..-..+-.. ........++.+ ..++.+++.|+.+.
T Consensus 241 ~~v~~v~~~p~~~~l~s~s~D------~~v~lwd~~~~~~~~~~~~---~~~~~~~~~~~~--s~~g~~l~~g~~d~--- 306 (354)
T 2pbi_B 241 SDVNSVRYYPSGDAFASGSDD------ATCRLYDLRADREVAIYSK---ESIIFGASSVDF--SLSGRLLFAGYNDY--- 306 (354)
T ss_dssp SCEEEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEECC---TTCCSCEEEEEE--CTTSSEEEEEETTS---
T ss_pred CCeEEEEEeCCCCEEEEEeCC------CeEEEEECCCCcEEEEEcC---CCcccceeEEEE--eCCCCEEEEEECCC---
Confidence 111222222 45577777752 2488899887643222211 111222223333 23567777777554
Q ss_pred ccCcEEEEEccc
Q 011998 216 ALDDMYYLYTGL 227 (473)
Q Consensus 216 ~~~dv~~ld~~~ 227 (473)
.+.++|...
T Consensus 307 ---~i~vwd~~~ 315 (354)
T 2pbi_B 307 ---TINVWDVLK 315 (354)
T ss_dssp ---CEEEEETTT
T ss_pred ---cEEEEECCC
Confidence 366666543
No 210
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=40.60 E-value=3.3e+02 Score=28.27 Aligned_cols=93 Identities=12% Similarity=0.119 Sum_probs=49.2
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcc
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRA 138 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~ 138 (473)
..+.+||+.+.+-...-.. ....-.++.+ ++.+++.||.++ .+.+||+.+.+- +.. +.....
T Consensus 541 ~~v~vwd~~~~~~~~~~~~-----h~~~v~~v~~spdg~~l~sg~~Dg------~i~iwd~~~~~~--~~~---~~~~~~ 604 (694)
T 3dm0_A 541 KTVKVWNLSNCKLRSTLAG-----HTGYVSTVAVSPDGSLCASGGKDG------VVLLWDLAEGKK--LYS---LEANSV 604 (694)
T ss_dssp SCEEEEETTTCCEEEEECC-----CSSCEEEEEECTTSSEEEEEETTS------BCEEEETTTTEE--EEC---CBCSSC
T ss_pred CeEEEEECCCCcEEEEEcC-----CCCCEEEEEEeCCCCEEEEEeCCC------eEEEEECCCCce--EEE---ecCCCc
Confidence 3588889887654432211 1111222233 677888888654 367788877653 222 122222
Q ss_pred eeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 139 GHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 139 ~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
-++++...+..++.++.. +.+.+||+.+..-
T Consensus 605 v~~~~~sp~~~~l~~~~~------~~i~iwd~~~~~~ 635 (694)
T 3dm0_A 605 IHALCFSPNRYWLCAATE------HGIKIWDLESKSI 635 (694)
T ss_dssp EEEEEECSSSSEEEEEET------TEEEEEETTTTEE
T ss_pred EEEEEEcCCCcEEEEEcC------CCEEEEECCCCCC
Confidence 344444444444444432 2388888887643
No 211
>3no2_A Uncharacterized protein; six-bladed beta-propeller, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE CIT PEG; 1.35A {Bacteroides caccae}
Probab=40.43 E-value=2.2e+02 Score=26.09 Aligned_cols=166 Identities=13% Similarity=0.086 Sum_probs=77.9
Q ss_pred CcEEEEECCCC-eEEecccCCCCCCcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC-eEEEeecCCC
Q 011998 5 RDLHILDTSSH-TWISPSVRGEGPEAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF-VWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~-~W~~l~~~~~~P~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~-~W~~l~~~g~ 81 (473)
+.++.||+... .|+.-. +....-+++..+ ++++++..... ...++.+|++.. .|+.-...+.
T Consensus 56 ~~V~~~d~~G~~~W~~~~-----~~~~~~~~~~~~~dG~~lv~~~~~----------~~~v~~vd~~Gk~l~~~~~~~~~ 120 (276)
T 3no2_A 56 KGAKMITRDGRELWNIAA-----PAGCEMQTARILPDGNALVAWCGH----------PSTILEVNMKGEVLSKTEFETGI 120 (276)
T ss_dssp SEEEEECTTSCEEEEEEC-----CTTCEEEEEEECTTSCEEEEEEST----------TEEEEEECTTSCEEEEEEECCSC
T ss_pred CCEEEECCCCCEEEEEcC-----CCCccccccEECCCCCEEEEecCC----------CCEEEEEeCCCCEEEEEeccCCC
Confidence 35778888322 465431 111122333333 45666554410 135788887544 3442211110
Q ss_pred -CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC-EEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCC
Q 011998 82 -PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDS 158 (473)
Q Consensus 82 -~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~ 158 (473)
.+...........++.+++.... -..+.+||++... |+.-.. ..-+++... ++.++|.+...
T Consensus 121 ~~~~~~~~~v~~~~~G~~lv~~~~------~~~v~~~d~~G~~~w~~~~~-------~~~~~~~~~~~g~~~v~~~~~-- 185 (276)
T 3no2_A 121 ERPHAQFRQINKNKKGNYLVPLFA------TSEVREIAPNGQLLNSVKLS-------GTPFSSAFLDNGDCLVACGDA-- 185 (276)
T ss_dssp SSGGGSCSCCEECTTSCEEEEETT------TTEEEEECTTSCEEEEEECS-------SCCCEEEECTTSCEEEECBTT--
T ss_pred CcccccccCceECCCCCEEEEecC------CCEEEEECCCCCEEEEEECC-------CCccceeEcCCCCEEEEeCCC--
Confidence 01111112223335666665432 2568899987332 543321 112334444 56777776541
Q ss_pred CCccccEEEEeCCCC--cEEEEeeCCCCCCCcc-eeeEEEeccccCCEEEEEc
Q 011998 159 QNLYDDLYMIDVDSG--LWTKVITTGEGPSARF-SVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 159 ~~~~ndv~~yd~~t~--~W~~v~~~g~~P~~R~-~~~a~~~~~~~~~~l~v~G 208 (473)
..+..+|++++ .|+.-... .+..|. ...++.+ ..++.+||..
T Consensus 186 ----~~v~~~d~~tG~~~w~~~~~~--~~~~~l~~~~~~~~--~~~G~i~v~~ 230 (276)
T 3no2_A 186 ----HCFVQLNLESNRIVRRVNAND--IEGVQLFFVAQLFP--LQNGGLYICN 230 (276)
T ss_dssp ----SEEEEECTTTCCEEEEEEGGG--SBSCCCSEEEEEEE--CTTSCEEEEE
T ss_pred ----CeEEEEeCcCCcEEEEecCCC--CCCccccccccceE--cCCCCEEEEe
Confidence 35899999865 46654321 121122 1222222 2478888876
No 212
>1sq9_A Antiviral protein SKI8; WD repeat, beta-transducin repeat, WD40 repeat, beta propeller, recombination; 1.90A {Saccharomyces cerevisiae} SCOP: b.69.4.1 PDB: 1s4u_X
Probab=40.22 E-value=2.3e+02 Score=26.38 Aligned_cols=106 Identities=11% Similarity=0.031 Sum_probs=49.3
Q ss_pred CcEEEEECCCCeEEecccCCCCC--CcccceEEEEE-CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGP--EAREGHSAALV-GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P--~~R~~hsa~~~-~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~ 81 (473)
..+.+||+.+.+....-...... ....-.+++.. ++.+++.|+.+. ....+.+||+.+.+-...-....
T Consensus 207 g~i~i~d~~~~~~~~~~~~~~~h~~~~~~i~~i~~~~~~~~l~~~~~d~--------~~g~i~i~d~~~~~~~~~~~~~~ 278 (397)
T 1sq9_A 207 GTVQISELSTLRPLYNFESQHSMINNSNSIRSVKFSPQGSLLAIAHDSN--------SFGCITLYETEFGERIGSLSVPT 278 (397)
T ss_dssp SEEEEEETTTTEEEEEEECCC---CCCCCEEEEEECSSTTEEEEEEEET--------TEEEEEEEETTTCCEEEEECBC-
T ss_pred CcEEEEECCCCceeEEEeccccccccCCccceEEECCCCCEEEEEecCC--------CCceEEEEECCCCcccceeccCc
Confidence 35788888776544321100000 01111222222 456667776310 01468899988764322211100
Q ss_pred CCC--------CceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCE
Q 011998 82 PPS--------ARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTW 124 (473)
Q Consensus 82 ~P~--------~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W 124 (473)
.+. ....-..+.+ ++.+++.|+.+ ..+.+||..+.+-
T Consensus 279 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~~~d------g~i~iwd~~~~~~ 325 (397)
T 1sq9_A 279 HSSQASLGEFAHSSWVMSLSFNDSGETLCSAGWD------GKLRFWDVKTKER 325 (397)
T ss_dssp -------CCBSBSSCEEEEEECSSSSEEEEEETT------SEEEEEETTTTEE
T ss_pred ccccccccccccCCcEEEEEECCCCCEEEEEeCC------CeEEEEEcCCCce
Confidence 000 1112222333 56677777743 3588899877653
No 213
>1vyh_C Platelet-activating factor acetylhydrolase IB alpha subunit; lissencephaly, platelet activacting factor, regulator of cytoplasmic dynein; 3.4A {Mus musculus} SCOP: b.69.4.1
Probab=39.94 E-value=2.6e+02 Score=26.87 Aligned_cols=65 Identities=12% Similarity=0.051 Sum_probs=36.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++..++.|+.+ ..+.+||+.+..-...-.. ......++.+ ++.+++.|+.++ .+.+
T Consensus 203 ~~~~l~s~s~D-----------~~i~~wd~~~~~~~~~~~~-----h~~~v~~~~~~~~g~~l~s~s~D~------~v~v 260 (410)
T 1vyh_C 203 NGDHIVSASRD-----------KTIKMWEVQTGYCVKTFTG-----HREWVRMVRPNQDGTLIASCSNDQ------TVRV 260 (410)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTCCEEEEEEC-----CSSCEEEEEECTTSSEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEECCCCcEEEEEeC-----CCccEEEEEECCCCCEEEEEcCCC------eEEE
Confidence 45666777742 3688899988754322111 1111222222 567788887653 4677
Q ss_pred EECCCCCEE
Q 011998 117 LDTDTLTWK 125 (473)
Q Consensus 117 yD~~t~~W~ 125 (473)
||..+....
T Consensus 261 wd~~~~~~~ 269 (410)
T 1vyh_C 261 WVVATKECK 269 (410)
T ss_dssp EETTTCCEE
T ss_pred EECCCCcee
Confidence 887776543
No 214
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=39.84 E-value=2.5e+02 Score=26.60 Aligned_cols=142 Identities=15% Similarity=0.153 Sum_probs=68.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC--eEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF--VWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~--~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv 114 (473)
++.+++.|+.+ ..+.+||+... .-..+..- ...-.++.+ ++..++.|+.++ .+
T Consensus 217 ~~~~l~sgs~D-----------~~v~~wd~~~~~~~~~~~~~h------~~~v~~v~~~p~~~~l~s~s~D~------~i 273 (380)
T 3iz6_a 217 NANMFISGSCD-----------TTVRLWDLRITSRAVRTYHGH------EGDINSVKFFPDGQRFGTGSDDG------TC 273 (380)
T ss_dssp SCCEEEEEETT-----------SCEEEEETTTTCCCCEEECCC------SSCCCEEEECTTSSEEEEECSSS------CE
T ss_pred CCCEEEEEECC-----------CeEEEEECCCCCcceEEECCc------CCCeEEEEEecCCCeEEEEcCCC------eE
Confidence 46788888853 35788887632 11111110 011112222 567788888654 37
Q ss_pred EEEECCCCCEEEeeCCCCC--CCCc-ceeEEEE-ECCEEEEEecccCCCCccccEEEEeCCCCcEEEEe-eCCCCCCCcc
Q 011998 115 HILDTDTLTWKELNTSGMV--LSPR-AGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVI-TTGEGPSARF 189 (473)
Q Consensus 115 ~~yD~~t~~W~~l~~~g~~--p~~R-~~hs~~~-~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~-~~g~~P~~R~ 189 (473)
.+||+.+..-...-..... .... .-.+++. .++++++.|+.+ ..+.+||+.+..-.... .....-..+.
T Consensus 274 ~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~l~~g~~d------g~i~vwd~~~~~~~~~~~~~~~~h~~~v 347 (380)
T 3iz6_a 274 RLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSN------GDCYVWDTLLAEMVLNLGTLQNSHEGRI 347 (380)
T ss_dssp EEEETTTTEEEEEECCCCSSSCCSSCSCSEEEECSSSSEEEEECTT------SCEEEEETTTCCEEEEECCSCSSCCCCC
T ss_pred EEEECCCCcEEEEecccccccccccCceEEEEECCCCCEEEEEECC------CCEEEEECCCCceEEEEecccCCCCCce
Confidence 7888887654333211000 0000 1122222 245666666642 34889998776543221 1100111111
Q ss_pred eeeEEEeccccCCEEEEEcccCCC
Q 011998 190 SVAGDCLDPLKGGVLVFIGGCNKS 213 (473)
Q Consensus 190 ~~~a~~~~~~~~~~l~v~GG~~~~ 213 (473)
.+..+ ..++.+++.||.+..
T Consensus 348 --~~l~~--s~dg~~l~sgs~D~~ 367 (380)
T 3iz6_a 348 --SCLGL--SSDGSALCTGSWDKN 367 (380)
T ss_dssp --CEEEE--CSSSSEEEEECTTSC
T ss_pred --EEEEE--CCCCCEEEEeeCCCC
Confidence 12222 246778888887764
No 215
>4gga_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; 2.04A {Homo sapiens} PDB: 4ggd_A
Probab=38.32 E-value=2.8e+02 Score=26.64 Aligned_cols=94 Identities=16% Similarity=0.169 Sum_probs=51.8
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP 82 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~ 82 (473)
+.|+++|..+++...+-. .......-.++.+ ++.+++.|+.+ ..+.+||+.+.+-......
T Consensus 125 ~tV~lWd~~tg~~~~~~~---~~~~~~~V~sv~fspdg~~lasgs~D-----------g~v~iWd~~~~~~~~~~~~--- 187 (420)
T 4gga_A 125 NSVYLWSASSGDILQLLQ---MEQPGEYISSVAWIKEGNYLAVGTSS-----------AEVQLWDVQQQKRLRNMTS--- 187 (420)
T ss_dssp TEEEEEETTTCCEEEEEE---CCSTTCCEEEEEECTTSSEEEEEETT-----------SCEEEEETTTTEEEEEECC---
T ss_pred CEEEEEECCCCCEEEEEE---ecCCCCcEEEEEECCCCCEEEEEECC-----------CeEEEEEcCCCcEEEEEeC---
Confidence 357888888887665421 1111111122222 46777778742 3588899988764333221
Q ss_pred CCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCC
Q 011998 83 PSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLT 123 (473)
Q Consensus 83 P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~ 123 (473)
......+...++.+++.|+.++ .++.+|.....
T Consensus 188 --h~~~v~~~s~~~~~l~sgs~d~------~i~~~d~~~~~ 220 (420)
T 4gga_A 188 --HSARVGSLSWNSYILSSGSRSG------HIHHHDVRVAE 220 (420)
T ss_dssp --CSSCEEEEEEETTEEEEEETTS------EEEEEETTSSS
T ss_pred --CCCceEEEeeCCCEEEEEeCCC------ceeEeeecccc
Confidence 1122334455777788887543 45667766544
No 216
>1su3_A Interstitial collagenase; prodomain, hemopexin domain, exocite, structural proteomics in europe, spine, structural genomics, hydrolase; HET: EPE; 2.20A {Homo sapiens} SCOP: a.20.1.2 b.66.1.1 d.92.1.11 PDB: 2clt_A 1fbl_A*
Probab=37.36 E-value=3.4e+02 Score=27.40 Aligned_cols=151 Identities=10% Similarity=0.063 Sum_probs=75.7
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecC---CCCCCCceeeEEEEE--CCEEEEEeCCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTS---GNPPSARDSHTCSSW--KNKIIVIGGEDGHD 108 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~---g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~ 108 (473)
+++.+++.+|+|=|. -+|+++.....+...... ..+|.. --++... ++++|+|=|
T Consensus 267 Ai~~~~ge~y~Fkg~-------------~~wr~~~~~~~~~p~~I~~~Wp~LP~~--iDAa~~~~~~g~~~fFKg----- 326 (450)
T 1su3_A 267 AITTIRGEVMFFKDR-------------FYMRTNPFYPEVELNFISVFWPQLPNG--LEAAYEFADRDEVRFFKG----- 326 (450)
T ss_dssp EEEEETTEEEEEETT-------------EEEECCTTSSSCEEEEGGGTCTTSCSS--CCEEEEEGGGTEEEEEET-----
T ss_pred eEEecCCeEEEEeCC-------------EEEEEcCCCCcccceehhHhccCCCCC--eeEEEEEcCCCeEEEEeC-----
Confidence 556789999999883 467776554433322211 112322 2233332 689999976
Q ss_pred CccceEEEEECCCCC--E-EEee-CCCCCCC-CcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEE-----
Q 011998 109 YYLSDVHILDTDTLT--W-KELN-TSGMVLS-PRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWT----- 176 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~--W-~~l~-~~g~~p~-~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~----- 176 (473)
+.+|+|+..+.. + ..+. ..+ +|. +..--++... ++++|+|-|. ..|+||..+.+-.
T Consensus 327 ---~~~W~~~~~~~~~gyP~~i~~~~g-~P~~~~~IDAA~~~~~~~k~yfFkG~--------~yw~yd~~~~~~~~gYPk 394 (450)
T 1su3_A 327 ---NKYWAVQGQNVLHGYPKDIYSSFG-FPRTVKHIDAALSEENTGKTYFFVAN--------KYWRYDEYKRSMDPGYPK 394 (450)
T ss_dssp ---TEEEEEETTEECTTCSEEHHHHHC-CCTTCCCCCEEEEETTTTEEEEEETT--------EEEEEETTTTEECSSCSE
T ss_pred ---CEEEEecCCcccCCCceeeehhhc-CCCCCCccceEEEEcCCCeEEEEeCC--------EEEEEeCCCccccCCCCc
Confidence 456777643210 0 1111 001 221 1112233333 5789999773 4899987653211
Q ss_pred EEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 177 KVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 177 ~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
.+.. +....+..-.+++. .++++|+|=| +..|+||....+
T Consensus 395 ~I~~-~fpgip~~iDAA~~----~~g~~YFFkg--------~~ywr~d~~~~~ 434 (450)
T 1su3_A 395 MIAH-DFPGIGHKVDAVFM----KDGFFYFFHG--------TRQYKFDPKTKR 434 (450)
T ss_dssp EHHH-HSTTSCSCCSEEEE----ETTEEEEEET--------TEEEEEETTTTE
T ss_pred chhh-cCCCCCCCccEEEE----cCCeEEEEeC--------CEEEEEECCcce
Confidence 1110 00011112223333 2688888855 346888876544
No 217
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=37.20 E-value=2.9e+02 Score=26.61 Aligned_cols=71 Identities=8% Similarity=-0.037 Sum_probs=40.1
Q ss_pred CCEEEEEeCCCCC---CCccceEEEEECCCCCE-EEeeCCCCCCCCcceeEEEEE-CCE-EEEEecccCCCCccccEEEE
Q 011998 95 KNKIIVIGGEDGH---DYYLSDVHILDTDTLTW-KELNTSGMVLSPRAGHSTVAF-GKN-LFVFGGFTDSQNLYDDLYMI 168 (473)
Q Consensus 95 ~~~IyV~GG~~~~---~~~~ndv~~yD~~t~~W-~~l~~~g~~p~~R~~hs~~~~-~~~-LyV~GG~~~~~~~~ndv~~y 168 (473)
++++||....... ....++++++|+.+.+- ..++. +..-+.+... +++ +++.+... .+++.++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~------g~~p~~i~~s~Dg~~~l~v~~~~-----~~~V~Vi 346 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL------GHDVDAISVAQDGGPDLYALSAG-----TEVLHIY 346 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC------CCCcCeEEECCCCCeEEEEEcCC-----CCeEEEE
Confidence 5789997543211 12357899999988765 33432 2223333333 444 33333321 2679999
Q ss_pred eCCCCcEE
Q 011998 169 DVDSGLWT 176 (473)
Q Consensus 169 d~~t~~W~ 176 (473)
|+.+.+=.
T Consensus 347 D~~t~~vv 354 (373)
T 2mad_H 347 DAGAGDQD 354 (373)
T ss_pred ECCCCCEE
Confidence 98876543
No 218
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=36.13 E-value=3.1e+02 Score=26.61 Aligned_cols=146 Identities=12% Similarity=0.019 Sum_probs=72.8
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe---EEEeecCCCCCCCceeeE-EEEE--CCEEEEEeCCCCCCCccc
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV---WKRATTSGNPPSARDSHT-CSSW--KNKIIVIGGEDGHDYYLS 112 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~---W~~l~~~g~~P~~R~~hs-~~~~--~~~IyV~GG~~~~~~~~n 112 (473)
++.+||.+-.. ...+|++++.... |-.-.+ .+..|.+.. ++.. +..|++..+ -.
T Consensus 147 ~GnaYVt~s~~----------~~~I~rV~pdG~~~~~~~~~~~---~~~~~~G~nGIv~~pdg~~Liv~~~-------~g 206 (334)
T 2p9w_A 147 DGNSYVAFALG----------MPAIARVSADGKTVSTFAWESG---NGGQRPGYSGITFDPHSNKLIAFGG-------PR 206 (334)
T ss_dssp TSCEEEEEEES----------SCEEEEECTTSCCEEEEEECCC---CSSSCCSCSEEEEETTTTEEEEESS-------SS
T ss_pred CCCEEEeCCCC----------CCeEEEEeCCCCEEeeeeecCC---CcccccCcceEEEeCCCCEEEEEcC-------CC
Confidence 47999976641 1469999987542 432211 123344444 3444 456777654 25
Q ss_pred eEEEEECCCCCEEEeeCC--CCC-C-CCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCC--
Q 011998 113 DVHILDTDTLTWKELNTS--GMV-L-SPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPS-- 186 (473)
Q Consensus 113 dv~~yD~~t~~W~~l~~~--g~~-p-~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~-- 186 (473)
.+++||+.+.....++.. |.. . ..-.+-.....+++++++.-.. +..+++--..+ |+.....+..|.
T Consensus 207 ~L~~fD~~~pv~~~v~~~~~G~~~~~~~~dgilp~~~~G~vllV~~~~------~~~~~l~S~Dg-W~sa~~~g~~~~~~ 279 (334)
T 2p9w_A 207 ALTAFDVSKPYAWPEPVKINGDFGTLSGTEKIVTVPVGNESVLVGARA------PYAISFRSWDN-WKSANIKKTKRSEL 279 (334)
T ss_dssp SEEEEECSSSSCCCEECEESSCCCCCTTEEEEEEEEETTEEEEEEEET------TEEEEEECSST-TSEEEEEEEECGGG
T ss_pred eEEEEcCCCCcceeecccccCCcccccCcccccccccCCEEEEEEcCC------CCEEEEECCCC-cceeEEeeeecCcc
Confidence 589999875433123221 111 0 0111112334688874443321 22444444444 988776654444
Q ss_pred -CcceeeEEEeccccCCEEEEEcccC
Q 011998 187 -ARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 187 -~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
++...+++.+-...+++||++-++-
T Consensus 280 ~~~g~tt~t~~~~~~~~~iYvv~~~f 305 (334)
T 2p9w_A 280 QNSGFTAVADYYQGSEQGLYAVSAFF 305 (334)
T ss_dssp GSSCEEEEEEEEETTEEEEEEEECCG
T ss_pred ccCceeEEEEeccccCCeEEEEeeec
Confidence 2332232221011468899987654
No 219
>1yfq_A Cell cycle arrest protein BUB3; WD repeat WD40 repeat beta transducin repeat all beta, signaling protein; 1.10A {Saccharomyces cerevisiae} SCOP: b.69.4.2 PDB: 1u4c_A 2i3s_A 2i3t_A
Probab=35.75 E-value=2.5e+02 Score=25.42 Aligned_cols=104 Identities=6% Similarity=0.060 Sum_probs=52.6
Q ss_pred CCE-EEEEecCCCCCCCCCceeeCeEEEEEC-CCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKR-LFIFGGCGKSSNTNDEVYYNDLYILNT-ETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~-Iyv~GG~~~~~~~~~~~~~~dv~~yd~-~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++. +++.|+.+ ..+.+||+ .+.....+... +....-.++....+.+++.|+.+ ..+.+
T Consensus 67 ~~~~~l~~~~~d-----------g~i~~wd~~~~~~~~~~~~~---~~~~~v~~l~~~~~~~l~s~~~d------~~i~i 126 (342)
T 1yfq_A 67 NTDLQIYVGTVQ-----------GEILKVDLIGSPSFQALTNN---EANLGICRICKYGDDKLIAASWD------GLIEV 126 (342)
T ss_dssp SSSEEEEEEETT-----------SCEEEECSSSSSSEEECBSC---CCCSCEEEEEEETTTEEEEEETT------SEEEE
T ss_pred CCCcEEEEEcCC-----------CeEEEEEeccCCceEecccc---CCCCceEEEEeCCCCEEEEEcCC------CeEEE
Confidence 566 77777742 36889999 88876555331 01111122222225566666654 34677
Q ss_pred EECCCCC-------EEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCC
Q 011998 117 LDTDTLT-------WKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 117 yD~~t~~-------W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t 172 (473)
||+.+.. ...+.. ......-.++....+. ++.|+.. ..+.+||+.+
T Consensus 127 wd~~~~~~~~~~~~~~~~~~---~~~~~~v~~~~~~~~~-l~~~~~d------~~i~i~d~~~ 179 (342)
T 1yfq_A 127 IDPRNYGDGVIAVKNLNSNN---TKVKNKIFTMDTNSSR-LIVGMNN------SQVQWFRLPL 179 (342)
T ss_dssp ECHHHHTTBCEEEEESCSSS---SSSCCCEEEEEECSSE-EEEEEST------TEEEEEESSC
T ss_pred EcccccccccccccCCeeeE---EeeCCceEEEEecCCc-EEEEeCC------CeEEEEECCc
Confidence 7765300 111111 2222222334444555 5555442 3588999887
No 220
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=35.70 E-value=3.4e+02 Score=26.95 Aligned_cols=133 Identities=11% Similarity=0.069 Sum_probs=62.7
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEE-ECCEEEEEeCCCCCCCccceEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSS-WKNKIIVIGGEDGHDYYLSDVHIL 117 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~~~~ndv~~y 117 (473)
++++++.|+.+ ..+.+||.....-..+... ... -.+++. -++++++.|+.++ .+.+|
T Consensus 437 d~~~l~~~~~d-----------~~v~~w~~~~~~~~~~~~~----~~~-v~~~~~spd~~~las~~~d~------~i~iw 494 (577)
T 2ymu_A 437 DDQTIASASDD-----------KTVKLWNRNGQLLQTLTGH----SSS-VRGVAFSPDGQTIASASDDK------TVKLW 494 (577)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTSCEEEEEECC----SSC-EEEEEECTTSCEEEEEETTS------EEEEE
T ss_pred CCCEEEEEcCC-----------CEEEEEECCCCEEEEEcCC----CCC-EEEEEEcCCCCEEEEEeCCC------EEEEE
Confidence 45666666631 3577788765544444321 111 122222 2677777777543 46777
Q ss_pred ECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEe
Q 011998 118 DTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCL 196 (473)
Q Consensus 118 D~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~ 196 (473)
|.....-..+.. .... -.+++.. ++++++.|+.+ ..+.+||.....-..+... ... ..++.+
T Consensus 495 ~~~~~~~~~~~~----h~~~-v~~l~~s~dg~~l~s~~~d------g~v~lwd~~~~~~~~~~~h----~~~--v~~~~f 557 (577)
T 2ymu_A 495 NRNGQLLQTLTG----HSSS-VRGVAFSPDGQTIASASDD------KTVKLWNRNGQLLQTLTGH----SSS--VWGVAF 557 (577)
T ss_dssp ETTSCEEEEEEC----CSSC-EEEEEECTTSSCEEEEETT------SEEEEECTTSCEEEEEECC----SSC--EEEEEE
T ss_pred cCCCCEEEEEeC----CCCC-EEEEEEcCCCCEEEEEECc------CEEEEEeCCCCEEEEEcCC----CCC--EEEEEE
Confidence 864433333321 0111 1122222 45666666652 2477888655433333221 111 112222
Q ss_pred ccccCCEEEEEcccCC
Q 011998 197 DPLKGGVLVFIGGCNK 212 (473)
Q Consensus 197 ~~~~~~~l~v~GG~~~ 212 (473)
..++++++.||.+.
T Consensus 558 --s~dg~~l~s~~~D~ 571 (577)
T 2ymu_A 558 --SPDGQTIASASSDK 571 (577)
T ss_dssp --CTTSSCEEEEETTS
T ss_pred --cCCCCEEEEEeCCC
Confidence 23666677777655
No 221
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli}
Probab=35.30 E-value=4e+02 Score=27.64 Aligned_cols=146 Identities=14% Similarity=0.131 Sum_probs=71.1
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++++++.|+.+ ..+.+||+.+..-...-.. .. ..-.++.+ ++..++.|+.++ .+.+
T Consensus 441 ~g~~l~sgs~D-----------g~v~vwd~~~~~~~~~~~~---h~--~~v~~~~~s~~~~~l~s~s~D~------~i~i 498 (694)
T 3dm0_A 441 DGQFALSGSWD-----------GELRLWDLAAGVSTRRFVG---HT--KDVLSVAFSLDNRQIVSASRDR------TIKL 498 (694)
T ss_dssp TSSEEEEEETT-----------SEEEEEETTTTEEEEEEEC---CS--SCEEEEEECTTSSCEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CcEEEEECCCCcceeEEeC---CC--CCEEEEEEeCCCCEEEEEeCCC------EEEE
Confidence 46677777742 4688899988754332111 01 11122222 566777777654 3667
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-C-C--EEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceee
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-G-K--NLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVA 192 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~-~--~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~ 192 (473)
||.....-..+... ....+..-.++.+ . + .+++.|+.+ ..+.+||+.+.+-...-. + .... ..
T Consensus 499 wd~~~~~~~~~~~~--~~~h~~~v~~~~~~~~~~~~~l~s~s~d------~~v~vwd~~~~~~~~~~~-~--h~~~--v~ 565 (694)
T 3dm0_A 499 WNTLGECKYTISEG--GEGHRDWVSCVRFSPNTLQPTIVSASWD------KTVKVWNLSNCKLRSTLA-G--HTGY--VS 565 (694)
T ss_dssp ECTTSCEEEEECSS--TTSCSSCEEEEEECSCSSSCEEEEEETT------SCEEEEETTTCCEEEEEC-C--CSSC--EE
T ss_pred EECCCCcceeeccC--CCCCCCcEEEEEEeCCCCcceEEEEeCC------CeEEEEECCCCcEEEEEc-C--CCCC--EE
Confidence 77654432222210 1111222223333 2 2 356666652 348889988765433221 1 1111 12
Q ss_pred EEEeccccCCEEEEEcccCCCCCccCcEEEEEccc
Q 011998 193 GDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGL 227 (473)
Q Consensus 193 a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~ 227 (473)
++.+ ..++.+++.||.+.. +.++|...
T Consensus 566 ~v~~--spdg~~l~sg~~Dg~------i~iwd~~~ 592 (694)
T 3dm0_A 566 TVAV--SPDGSLCASGGKDGV------VLLWDLAE 592 (694)
T ss_dssp EEEE--CTTSSEEEEEETTSB------CEEEETTT
T ss_pred EEEE--eCCCCEEEEEeCCCe------EEEEECCC
Confidence 2223 246778888876653 45556544
No 222
>3c7x_A Matrix metalloproteinase-14; membrane protein interaction, Pro-MMP-2, TIMP-2, metastasis, calcium, cleavage on PAIR of basic residues, hydrolase; 1.70A {Homo sapiens}
Probab=34.83 E-value=1.1e+02 Score=27.14 Aligned_cols=108 Identities=13% Similarity=0.198 Sum_probs=56.2
Q ss_pred EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCC---CeEEEeecC-CCCCCCceeeEEEE-ECCEEEEEeCCCCCC
Q 011998 34 SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTET---FVWKRATTS-GNPPSARDSHTCSS-WKNKIIVIGGEDGHD 108 (473)
Q Consensus 34 sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t---~~W~~l~~~-g~~P~~R~~hs~~~-~~~~IyV~GG~~~~~ 108 (473)
+++.+++.+|+|-| +.+|+++... .-=..+... ..+|.. . -++.. .++++|+|-|
T Consensus 10 A~~~~~g~~~fFkg-------------~~~w~~~~~~~~~gyP~~I~~~w~glP~~-i-DAa~~~~~g~~yfFkg----- 69 (196)
T 3c7x_A 10 TVAMLRGEMFVFKE-------------RWFWRVRNNQVMDGYPMPIGQFWRGLPAS-I-NTAYERKDGKFVFFKG----- 69 (196)
T ss_dssp EEEEETTEEEEEET-------------TEEEEEETTEECTTCSEEHHHHSTTCCSS-C-CEEEECTTSCEEEEET-----
T ss_pred EEEEcCCEEEEEEC-------------CEEEEEECCccCCCCceEhhHhccCCCCC-c-cEEEEeCCCcEEEecC-----
Confidence 45577999999988 3578885331 000111111 112331 1 22222 3688999976
Q ss_pred CccceEEEEECCCCCE---EEeeCCC-CCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 109 YYLSDVHILDTDTLTW---KELNTSG-MVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 109 ~~~ndv~~yD~~t~~W---~~l~~~g-~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
+.+|+|+..+... ..+.... .+|.. .--++... ++++|+|-|. ..|+||..++
T Consensus 70 ---~~yw~~~~~~~~~gyPk~I~~~~~glP~~-~IDAA~~~~~~g~~yfFkG~--------~yw~yd~~~~ 128 (196)
T 3c7x_A 70 ---DKHWVFDEASLEPGYPKHIKELGRGLPTD-KIDAALFWMPNGKTYFFRGN--------KYYRFNEELR 128 (196)
T ss_dssp ---TEEEEEETTEECTTCSEEGGGTCBSCCSS-CCSEEEEETTTTEEEEEETT--------EEEEEETTTT
T ss_pred ---CEEEEEeCCcccCCCCeEhhhcCCCCCCC-cccEEEEEccCCEEEEEECC--------EEEEEeCCcc
Confidence 5578898542211 1121111 13322 12233333 5789999774 3789998764
No 223
>1got_B GT-beta; complex (GTP-binding/transducer), G protein, heterotrimer signal transduction; HET: GDP; 2.00A {Bos taurus} SCOP: b.69.4.1 PDB: 1b9y_A 1b9x_A* 2trc_B 1tbg_A 1gg2_B* 1omw_B 1gp2_B 1xhm_A 2qns_A 3ah8_B* 3cik_B 3kj5_A 3krw_B* 3krx_B* 3psc_B 3pvu_B* 3pvw_B* 1a0r_B* 2bcj_B* 3sn6_B*
Probab=34.69 E-value=2.8e+02 Score=25.68 Aligned_cols=136 Identities=14% Similarity=0.065 Sum_probs=68.4
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
..+.+||+.+..-...-.. ... .-.+++.. ++.+++.|+.++ .+.+||+.+..-...-. .....-
T Consensus 164 ~~i~~wd~~~~~~~~~~~~---h~~-~v~~~~~~~~~~~l~sg~~d~------~v~~wd~~~~~~~~~~~----~h~~~v 229 (340)
T 1got_B 164 TTCALWDIETGQQTTTFTG---HTG-DVMSLSLAPDTRLFVSGACDA------SAKLWDVREGMCRQTFT----GHESDI 229 (340)
T ss_dssp SCEEEEETTTTEEEEEECC---CSS-CEEEEEECTTSSEEEEEETTS------CEEEEETTTCSEEEEEC----CCSSCE
T ss_pred CcEEEEECCCCcEEEEEcC---CCC-ceEEEEECCCCCEEEEEeCCC------cEEEEECCCCeeEEEEc----CCcCCE
Confidence 3588899988764432211 111 11222222 567888887654 47788987765433221 011111
Q ss_pred eEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCCCCccC
Q 011998 140 HSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKSLEALD 218 (473)
Q Consensus 140 hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~~~~~~ 218 (473)
.+++.. ++++++.|+.+ ..+.+||+.+..-...-. .+.......++.+ ..++.+++.|+.+.
T Consensus 230 ~~v~~~p~~~~l~s~s~d------~~v~iwd~~~~~~~~~~~---~~~~~~~v~~~~~--s~~g~~l~~g~~d~------ 292 (340)
T 1got_B 230 NAICFFPNGNAFATGSDD------ATCRLFDLRADQELMTYS---HDNIICGITSVSF--SKSGRLLLAGYDDF------ 292 (340)
T ss_dssp EEEEECTTSSEEEEEETT------SCEEEEETTTTEEEEEEC---CTTCCSCEEEEEE--CTTSSEEEEEETTS------
T ss_pred EEEEEcCCCCEEEEEcCC------CcEEEEECCCCcEEEEEc---cCCcccceEEEEE--CCCCCEEEEECCCC------
Confidence 222222 45677777752 248889988764322211 1111112223333 24677777777554
Q ss_pred cEEEEEccc
Q 011998 219 DMYYLYTGL 227 (473)
Q Consensus 219 dv~~ld~~~ 227 (473)
.+.++|...
T Consensus 293 ~i~vwd~~~ 301 (340)
T 1got_B 293 NCNVWDALK 301 (340)
T ss_dssp EEEEEETTT
T ss_pred eEEEEEccc
Confidence 366666544
No 224
>3sjl_D Methylamine dehydrogenase heavy chain; MAUG, C-heme, quinone cofactor, oxidoreductase-electron transport complex; HET: 0AF HEC MES; 1.63A {Paracoccus denitrificans} PDB: 2gc7_A* 2j55_H* 2j56_H* 2j57_G* 3l4m_D* 3l4o_D* 3orv_D* 3pxs_D* 3pxt_D* 3rlm_D* 2gc4_A* 3rn0_D* 3rn1_D* 3rmz_D* 3svw_D* 3sws_D* 3sxt_D* 3pxw_D* 3sle_D* 1mg2_A* ...
Probab=34.09 E-value=1.6e+02 Score=29.14 Aligned_cols=71 Identities=20% Similarity=0.063 Sum_probs=43.0
Q ss_pred CCEEEEEe---CCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEE-ECC--EEEEEecccCCCCccccEEEE
Q 011998 95 KNKIIVIG---GEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVA-FGK--NLFVFGGFTDSQNLYDDLYMI 168 (473)
Q Consensus 95 ~~~IyV~G---G~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~-~~~--~LyV~GG~~~~~~~~ndv~~y 168 (473)
++++||.- +...+...-+.++++|+.+.+-..-- +.+..-+++.+ -++ .||+.-+. .+++.+|
T Consensus 291 ~~~lyV~~~~~~~~~hk~~~~~V~viD~~t~kv~~~i-----~vg~~~~~lavs~D~~~~ly~tn~~------~~~VsVi 359 (386)
T 3sjl_D 291 LDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKF-----EMGHEIDSINVSQDEKPLLYALSTG------DKTLYIH 359 (386)
T ss_dssp TTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEE-----EEEEEECEEEECSSSSCEEEEEETT------TTEEEEE
T ss_pred CCeEEEEeccccccccCCCCCEEEEEECCCCeEEEEE-----ECCCCcceEEECCCCCeEEEEEcCC------CCeEEEE
Confidence 68999963 22223334688999999998864432 22222333333 344 36665432 4579999
Q ss_pred eCCCCcEE
Q 011998 169 DVDSGLWT 176 (473)
Q Consensus 169 d~~t~~W~ 176 (473)
|..+++-.
T Consensus 360 D~~t~k~~ 367 (386)
T 3sjl_D 360 DAESGEEL 367 (386)
T ss_dssp ETTTCCEE
T ss_pred ECCCCcEE
Confidence 99988643
No 225
>1z68_A Fibroblast activation protein, alpha subunit; seprase, fibroblast activation protein alpha,fapalpha, dipeptidylpeptidase,S9B; HET: NAG NDG; 2.60A {Homo sapiens}
Probab=33.94 E-value=1.1e+02 Score=32.14 Aligned_cols=108 Identities=5% Similarity=-0.057 Sum_probs=52.3
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeE---EEeecCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVW---KRATTSGN 81 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W---~~l~~~g~ 81 (473)
..++++|..+++-..+.............-+..-+++.++++..... .........++++|+.+.+. ..+.
T Consensus 36 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~SpDg~~la~~~~~~~--~~~~s~~~~i~~~d~~~g~~~~~~~l~---- 109 (719)
T 1z68_A 36 NNIVLYNIETGQSYTILSNRTMKSVNASNYGLSPDRQFVYLESDYSK--LWRYSYTATYYIYDLSNGEFVRGNELP---- 109 (719)
T ss_dssp SCEEEEESSSCCEEEEECHHHHHTTTCSEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCCC----
T ss_pred CCEEEEEcCCCcEEEEEccccccccceeeEEECCCCCeEEEEecCce--eEEeecceEEEEEECCCCccccceecC----
Confidence 46888888888766553110000000111122224555555542100 00001235799999999876 3331
Q ss_pred CCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEee
Q 011998 82 PPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELN 128 (473)
Q Consensus 82 ~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~ 128 (473)
.........-+++.++++. -++++++|..+.+-..+.
T Consensus 110 ---~~~~~~~~SPDG~~la~~~-------~~~i~~~~~~~g~~~~l~ 146 (719)
T 1z68_A 110 ---RPIQYLCWSPVGSKLAYVY-------QNNIYLKQRPGDPPFQIT 146 (719)
T ss_dssp ---SSBCCEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECC
T ss_pred ---cccccceECCCCCEEEEEE-------CCeEEEEeCCCCCcEEEe
Confidence 1122222222555444442 147899998887766654
No 226
>4a11_B DNA excision repair protein ERCC-8; DNA binding protein, DNA damage repair; HET: DNA; 3.31A {Homo sapiens}
Probab=33.72 E-value=2.3e+02 Score=26.28 Aligned_cols=108 Identities=8% Similarity=-0.137 Sum_probs=50.3
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC--CceeeEEEEECCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS--ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~--~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++..++.|+.+ ..+.+||+.+..-........... ...........+..+++++.+ ..+.+
T Consensus 256 ~~~~l~~~~~d-----------g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~i~v 318 (408)
T 4a11_B 256 DGLHLLTVGTD-----------NRMRLWNSSNGENTLVNYGKVCNNSKKGLKFTVSCGCSSEFVFVPYG------STIAV 318 (408)
T ss_dssp TSSEEEEEETT-----------SCEEEEETTTCCBCCCCCCCCCCCCSSCCCCEECCSSSSCEEEEEET------TEEEE
T ss_pred CCCEEEEecCC-----------CeEEEEECCCCccceeccccccccccccceeEEecCCCceEEEEecC------CEEEE
Confidence 45666677642 358889988765322211100011 111111111223334444432 46888
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
||..+.+-...-. .. ...-.+++.. ++++++.|+.+ ..+.+||+.+.
T Consensus 319 ~d~~~~~~~~~~~---~~-~~~v~~~~~s~~~~~l~s~~~d------g~i~iw~~~~~ 366 (408)
T 4a11_B 319 YTVYSGEQITMLK---GH-YKTVDCCVFQSNFQELYSGSRD------CNILAWVPSLY 366 (408)
T ss_dssp EETTTCCEEEEEC---CC-SSCEEEEEEETTTTEEEEEETT------SCEEEEEECC-
T ss_pred EECcCCcceeeec---cC-CCeEEEEEEcCCCCEEEEECCC------CeEEEEeCCCC
Confidence 9987766433221 01 1111223333 45677777752 24778887764
No 227
>3iz6_a 40S ribosomal protein RACK1 (RACK1); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=33.15 E-value=3.2e+02 Score=25.83 Aligned_cols=141 Identities=18% Similarity=0.137 Sum_probs=66.6
Q ss_pred CeEEEEECCCCeEEEeecCCCCCCCc-eeeEEEEE---CCEEEEEeCCCCCCCccceEEEEECCCC--CEEEeeCCCCCC
Q 011998 61 NDLYILNTETFVWKRATTSGNPPSAR-DSHTCSSW---KNKIIVIGGEDGHDYYLSDVHILDTDTL--TWKELNTSGMVL 134 (473)
Q Consensus 61 ~dv~~yd~~t~~W~~l~~~g~~P~~R-~~hs~~~~---~~~IyV~GG~~~~~~~~ndv~~yD~~t~--~W~~l~~~g~~p 134 (473)
..+.+||+.+..-...... ..+... ..-....+ ++.+++.|+.++ .+.+||+... .-..+..
T Consensus 180 ~~i~~wd~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sgs~D~------~v~~wd~~~~~~~~~~~~~----- 247 (380)
T 3iz6_a 180 QTCVLWDVTTGQRISIFGS-EFPSGHTADVLSLSINSLNANMFISGSCDT------TVRLWDLRITSRAVRTYHG----- 247 (380)
T ss_dssp SCEEEECTTTCCEEEEECC-CSSSSCCSCEEEEEECSSSCCEEEEEETTS------CEEEEETTTTCCCCEEECC-----
T ss_pred CcEEEEEcCCCcEEEEeec-ccCCCCccCeEEEEeecCCCCEEEEEECCC------eEEEEECCCCCcceEEECC-----
Confidence 3578889888765433221 111111 11112222 567888888654 3677887532 1112211
Q ss_pred CCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCC--CCcceeeEEEeccccCCEEEEEcccC
Q 011998 135 SPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGP--SARFSVAGDCLDPLKGGVLVFIGGCN 211 (473)
Q Consensus 135 ~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P--~~R~~~~a~~~~~~~~~~l~v~GG~~ 211 (473)
....-.+++.. ++..++.|+.+ ..+.+||+.+..-...-...... .......++.+. .++.+++.|+.+
T Consensus 248 h~~~v~~v~~~p~~~~l~s~s~D------~~i~lwd~~~~~~~~~~~~~~~~~~~~~~~v~~~~~s--~~g~~l~~g~~d 319 (380)
T 3iz6_a 248 HEGDINSVKFFPDGQRFGTGSDD------GTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFS--ISGRLLFAGYSN 319 (380)
T ss_dssp CSSCCCEEEECTTSSEEEEECSS------SCEEEEETTTTEEEEEECCCCSSSCCSSCSCSEEEEC--SSSSEEEEECTT
T ss_pred cCCCeEEEEEecCCCeEEEEcCC------CeEEEEECCCCcEEEEecccccccccccCceEEEEEC--CCCCEEEEEECC
Confidence 00011122222 45577777753 24888999887543332210000 000011222222 356777777655
Q ss_pred CCCCccCcEEEEEccc
Q 011998 212 KSLEALDDMYYLYTGL 227 (473)
Q Consensus 212 ~~~~~~~dv~~ld~~~ 227 (473)
. .++++|...
T Consensus 320 g------~i~vwd~~~ 329 (380)
T 3iz6_a 320 G------DCYVWDTLL 329 (380)
T ss_dssp S------CEEEEETTT
T ss_pred C------CEEEEECCC
Confidence 4 367777654
No 228
>4h5i_A Guanine nucleotide-exchange factor SEC12; copii vesicle budding, potassium binding site, beta propelle protein transport; 1.36A {Saccharomyces cerevisiae} PDB: 4h5j_A
Probab=32.96 E-value=3.2e+02 Score=25.80 Aligned_cols=134 Identities=9% Similarity=0.016 Sum_probs=65.7
Q ss_pred eEEEEECCCCeEEEeecCCCCCCCceeeEEEE--ECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcce
Q 011998 62 DLYILNTETFVWKRATTSGNPPSARDSHTCSS--WKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAG 139 (473)
Q Consensus 62 dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~--~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~ 139 (473)
.+.+++..+......... .........+. -++..++.++.++.. ...++.+|.....+...... .+......
T Consensus 198 ~~~~~~~~~~~~~~~~~~---~~~~~~v~~v~fspdg~~l~~~s~d~~~--~~~i~~~~~~~~~~~~~~~~-~~~~~~~~ 271 (365)
T 4h5i_A 198 SLEVISTVTGSCIARKTD---FDKNWSLSKINFIADDTVLIAASLKKGK--GIVLTKISIKSGNTSVLRSK-QVTNRFKG 271 (365)
T ss_dssp CEEEEETTTCCEEEEECC---CCTTEEEEEEEEEETTEEEEEEEESSSC--CEEEEEEEEETTEEEEEEEE-EEESSCSC
T ss_pred eEEEEEeccCcceeeeec---CCCCCCEEEEEEcCCCCEEEEEecCCcc--eeEEeecccccceecceeee-eecCCCCC
Confidence 467778777665433322 11122222332 378888887765543 23456677666555433210 01111111
Q ss_pred eEEEEE--CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCCC
Q 011998 140 HSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNKS 213 (473)
Q Consensus 140 hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~~ 213 (473)
-.++.+ ++++++.|+.+ ..+.+||+++.+- +......- .....++.+ ..++++++-|+.+..
T Consensus 272 V~~~~~Spdg~~lasgs~D------~~V~iwd~~~~~~--~~~~~~gH--~~~V~~v~f--Spdg~~laS~S~D~t 335 (365)
T 4h5i_A 272 ITSMDVDMKGELAVLASND------NSIALVKLKDLSM--SKIFKQAH--SFAITEVTI--SPDSTYVASVSAANT 335 (365)
T ss_dssp EEEEEECTTSCEEEEEETT------SCEEEEETTTTEE--EEEETTSS--SSCEEEEEE--CTTSCEEEEEETTSE
T ss_pred eEeEEECCCCCceEEEcCC------CEEEEEECCCCcE--EEEecCcc--cCCEEEEEE--CCCCCEEEEEeCCCe
Confidence 122222 56777888763 3488999987642 32210000 111122333 247788888876653
No 229
>2ece_A 462AA long hypothetical selenium-binding protein; beta propeller, structural genomics, unknown function; 2.00A {Sulfolobus tokodaii}
Probab=32.78 E-value=4.1e+02 Score=27.02 Aligned_cols=122 Identities=12% Similarity=-0.007 Sum_probs=58.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCC----eEEEeecCCCC----CCCceeeEE-EEECCEEEEEeCCCCCCC
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETF----VWKRATTSGNP----PSARDSHTC-SSWKNKIIVIGGEDGHDY 109 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~----~W~~l~~~g~~----P~~R~~hs~-~~~~~~IyV~GG~~~~~~ 109 (473)
++++|+-|.. .+.++++|..++ +-.+....... -..| -|+. +.-++ |||----+..+.
T Consensus 95 r~~l~v~~l~-----------s~~I~viD~~t~p~~p~~~k~ie~~~~~~~~g~s~-Ph~~~~~pdG-i~Vs~~g~~~g~ 161 (462)
T 2ece_A 95 RRFLIVPGLR-----------SSRIYIIDTKPNPREPKIIKVIEPEEVKKVSGYSR-LHTVHCGPDA-IYISALGNEEGE 161 (462)
T ss_dssp SCEEEEEBTT-----------TCCEEEEECCSCTTSCEEEEEECHHHHHHHHCEEE-EEEEEECSSC-EEEEEEEETTSC
T ss_pred CCEEEEccCC-----------CCeEEEEECCCCCCCceeeeeechhhcccccCCCc-ccceeECCCe-EEEEcCCCcCCC
Confidence 4567766663 367999998866 43333210000 1112 2443 33355 776322211222
Q ss_pred ccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEEC-CEEEEEe---------cccCCC---CccccEEEEeCCCC
Q 011998 110 YLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFG-KNLFVFG---------GFTDSQ---NLYDDLYMIDVDSG 173 (473)
Q Consensus 110 ~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~-~~LyV~G---------G~~~~~---~~~ndv~~yd~~t~ 173 (473)
.-..+.++|.+|.+-...-..+..|..........-+ +.+|+-- |+.... ...+.|.+||+.+.
T Consensus 162 ~~g~v~vlD~~T~~v~~~~~~~~~~~~~~Yd~~~~p~~~~mvsS~wg~p~~~~~g~~~~~~~~~~~d~V~v~D~~~~ 238 (462)
T 2ece_A 162 GPGGILMLDHYSFEPLGKWEIDRGDQYLAYDFWWNLPNEVLVSSEWAVPNTIEDGLKLEHLKDRYGNRIHFWDLRKR 238 (462)
T ss_dssp SCCEEEEECTTTCCEEEECCSBCTTCCCCCCEEEETTTTEEEECBCCCHHHHTTCCCTTTHHHHSCCEEEEEETTTT
T ss_pred CCCeEEEEECCCCeEEEEEccCCCCccccceEEECCCCCEEEEccCcCccccccccchhhhhhccCCEEEEEECCCC
Confidence 3578999999987743322211122111111111223 3344431 221111 34688999999876
No 230
>2mad_H Methylamine dehydrogenase (heavy subunit); oxidoreductase(CHNH2(D)-deaminating); HET: TRQ; 2.25A {Paracoccus versutus} SCOP: b.69.2.1 PDB: 1mae_H* 1maf_H*
Probab=32.56 E-value=3.5e+02 Score=26.07 Aligned_cols=69 Identities=9% Similarity=0.062 Sum_probs=36.6
Q ss_pred CCEEEEEecccC---CCCccccEEEEeCCCCcE-EEEeeCCCCCCCcceeeEEEeccccCC--EEEEEcccCCCCCccCc
Q 011998 146 GKNLFVFGGFTD---SQNLYDDLYMIDVDSGLW-TKVITTGEGPSARFSVAGDCLDPLKGG--VLVFIGGCNKSLEALDD 219 (473)
Q Consensus 146 ~~~LyV~GG~~~---~~~~~ndv~~yd~~t~~W-~~v~~~g~~P~~R~~~~a~~~~~~~~~--~l~v~GG~~~~~~~~~d 219 (473)
++++|+...... .....++++++|+.+.+- ..+.. + ..... ..+. .++ .+|+..+. .++
T Consensus 278 ~~~lyV~~~~~~~~~~~~~~~~V~VID~~t~~vv~~i~~-g-----~~p~~-i~~s--~Dg~~~l~v~~~~------~~~ 342 (373)
T 2mad_H 278 SDGIYLLTSEQSAWKLHAAAKEVTSVTGLVGQTSSQISL-G-----HDVDA-ISVA--QDGGPDLYALSAG------TEV 342 (373)
T ss_pred CCEEEEEeccCCcccccCCCCeEEEEECCCCEEEEEEEC-C-----CCcCe-EEEC--CCCCeEEEEEcCC------CCe
Confidence 467888754211 112457899999988654 33322 1 11122 2222 234 35543321 267
Q ss_pred EEEEEccccc
Q 011998 220 MYYLYTGLVN 229 (473)
Q Consensus 220 v~~ld~~~~~ 229 (473)
+..+|..+.+
T Consensus 343 V~ViD~~t~~ 352 (373)
T 2mad_H 343 LHIYDAGAGD 352 (373)
T ss_pred EEEEECCCCC
Confidence 9999987654
No 231
>2fp8_A Strictosidine synthase; six bladed beta propeller fold, lyase; 2.30A {Rauvolfia serpentina} PDB: 2fp9_A* 2fpc_A* 2vaq_A* 3v1s_A* 2fpb_A* 2v91_A*
Probab=30.30 E-value=3.2e+02 Score=25.06 Aligned_cols=140 Identities=9% Similarity=-0.101 Sum_probs=69.1
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCC---CeEEEeecC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTET---FVWKRATTS 79 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t---~~W~~l~~~ 79 (473)
..+++||+.+.+...+.. .. ..-..++.. + +.|||.-.. .+.+++|++.. ..++.+...
T Consensus 165 g~v~~~d~~~~~~~~~~~--~~---~~p~gia~~~dg~~lyv~d~~-----------~~~I~~~~~~~~~~~~~~~~~~~ 228 (322)
T 2fp8_A 165 GRLIKYDPSTKETTLLLK--EL---HVPGGAEVSADSSFVLVAEFL-----------SHQIVKYWLEGPKKGTAEVLVKI 228 (322)
T ss_dssp EEEEEEETTTTEEEEEEE--EE---SCCCEEEECTTSSEEEEEEGG-----------GTEEEEEESSSTTTTCEEEEEEC
T ss_pred ceEEEEeCCCCEEEEecc--CC---ccCcceEECCCCCEEEEEeCC-----------CCeEEEEECCCCcCCccceEEeC
Confidence 457778877766554321 11 111233333 2 357776331 25789999875 344443321
Q ss_pred CCCCCCceeeEEEEE-CCEEEEEeCCCCCC----CccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEec
Q 011998 80 GNPPSARDSHTCSSW-KNKIIVIGGEDGHD----YYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGG 154 (473)
Q Consensus 80 g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~----~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG 154 (473)
+. -..++.. ++.|||.-...... .....+++||+....-..+......+ ...-.+++..+++|||...
T Consensus 229 ---~g---P~gi~~d~~G~l~va~~~~~~~~~~~~~~~~v~~~d~~G~~~~~~~~~~g~~-~~~~~~~~~~~g~L~v~~~ 301 (322)
T 2fp8_A 229 ---PN---PGNIKRNADGHFWVSSSEELDGNMHGRVDPKGIKFDEFGNILEVIPLPPPFA-GEHFEQIQEHDGLLYIGTL 301 (322)
T ss_dssp ---SS---EEEEEECTTSCEEEEEEEETTSSTTSCEEEEEEEECTTSCEEEEEECCTTTT-TSCCCEEEEETTEEEEECS
T ss_pred ---CC---CCCeEECCCCCEEEEecCcccccccCCCccEEEEECCCCCEEEEEECCCCCc-cccceEEEEeCCEEEEeec
Confidence 21 2333333 56788875321000 01356899998765555555321111 1222334445788888643
Q ss_pred ccCCCCccccEEEEeCCCC
Q 011998 155 FTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 155 ~~~~~~~~ndv~~yd~~t~ 173 (473)
. .+.|.+|++..+
T Consensus 302 ~------~~~i~~~~~~~~ 314 (322)
T 2fp8_A 302 F------HGSVGILVYDKK 314 (322)
T ss_dssp S------CSEEEEEEC---
T ss_pred C------CCceEEEecccc
Confidence 2 245888877543
No 232
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=28.96 E-value=2.8e+02 Score=25.12 Aligned_cols=61 Identities=16% Similarity=0.280 Sum_probs=39.3
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec-CC-CCC------CCceeeEEEEE--CCEEEEEeCCCCCC
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT-SG-NPP------SARDSHTCSSW--KNKIIVIGGEDGHD 108 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~-~g-~~P------~~R~~hs~~~~--~~~IyV~GG~~~~~ 108 (473)
++++|+|-| +..|+||..+.+...-+- .. ..| .+..-.++... ++++|+|-|
T Consensus 127 ~gk~yfFkG-------------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG----- 188 (225)
T 3oyo_A 127 GKEVYLFKG-------------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKG----- 188 (225)
T ss_dssp TTEEEEEET-------------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEET-----
T ss_pred CCcEEEEeC-------------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEEC-----
Confidence 589999988 468999987766543110 00 011 13333455554 789999977
Q ss_pred CccceEEEEECC
Q 011998 109 YYLSDVHILDTD 120 (473)
Q Consensus 109 ~~~ndv~~yD~~ 120 (473)
+..|+||..
T Consensus 189 ---~~ywr~d~~ 197 (225)
T 3oyo_A 189 ---QNYVRIDFT 197 (225)
T ss_dssp ---TEEEEEECC
T ss_pred ---CEEEEEeCC
Confidence 567999987
No 233
>4d9s_A UVB-resistance protein UVR8; UV resistance, UV-B photoreceptor, tryptophan chromophores, homodimer, COP1, chromatin-binding protein; 1.70A {Arabidopsis thaliana} PDB: 4dnw_A 4dnu_A 4dnv_A
Probab=28.49 E-value=4.2e+02 Score=25.76 Aligned_cols=18 Identities=17% Similarity=0.108 Sum_probs=13.2
Q ss_pred eeeEEEEE-CCEEEEEeCC
Q 011998 87 DSHTCSSW-KNKIIVIGGE 104 (473)
Q Consensus 87 ~~hs~~~~-~~~IyV~GG~ 104 (473)
..|+++.. ++.+|.+|-.
T Consensus 182 ~~hs~alt~~G~v~~wG~n 200 (406)
T 4d9s_A 182 AEHTAAVTEDGDLYGWGWG 200 (406)
T ss_dssp SSEEEEEETTSCEEEEECC
T ss_pred CCeEEEEeCCCCEEEeeCC
Confidence 35777666 7899999853
No 234
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=28.29 E-value=3.6e+02 Score=24.90 Aligned_cols=118 Identities=14% Similarity=0.148 Sum_probs=65.0
Q ss_pred eEEEEE-C-CEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCC-CC
Q 011998 33 HSAALV-G-KRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGH-DY 109 (473)
Q Consensus 33 hsa~~~-~-~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~-~~ 109 (473)
+.+++. + +.|||.... .+.+.+||+.+.+....-... .....-.+++...+.+|+..|...- ..
T Consensus 199 ~gia~d~~~g~l~v~d~~-----------~~~I~~~~~~~G~~~~~~~~~--~~~~~~~~~~~~pg~~~~~~g~~~v~~~ 265 (329)
T 3fvz_A 199 HSLALVPHLDQLCVADRE-----------NGRIQCFKTDTKEFVREIKHA--SFGRNVFAISYIPGFLFAVNGKPYFGDQ 265 (329)
T ss_dssp EEEEEETTTTEEEEEETT-----------TTEEEEEETTTCCEEEEECCT--TTTTCEEEEEEETTEEEEEECCCCTTCS
T ss_pred cEEEEECCCCEEEEEECC-----------CCEEEEEECCCCcEEEEEecc--ccCCCcceeeecCCEEEEeCCCEEeccC
Confidence 344444 3 799998763 246899999877665433211 1112222334445788888775321 11
Q ss_pred ccceEEEEECCCCCEEEeeCCCCCCCC-cceeEEEEE-CCEEEEEecccCCCCccccEEEEeCC
Q 011998 110 YLSDVHILDTDTLTWKELNTSGMVLSP-RAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVD 171 (473)
Q Consensus 110 ~~ndv~~yD~~t~~W~~l~~~g~~p~~-R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~ 171 (473)
....++++|..+.+....-.. .+.. ..-+..++. ++.|||.... .+.|++|++.
T Consensus 266 ~~~~v~~~~~~~g~~~~~~~~--~~~~~~~p~~ia~~~dG~lyvad~~------~~~I~~~~~~ 321 (329)
T 3fvz_A 266 EPVQGFVMNFSSGEIIDVFKP--VRKHFDMPHDIVASEDGTVYIGDAH------TNTVWKFTLT 321 (329)
T ss_dssp CCCCEEEEETTTCCEEEEECC--SSSCCSSEEEEEECTTSEEEEEESS------SCCEEEEEEE
T ss_pred CCcEEEEEEcCCCeEEEEEcC--CCCccCCeeEEEECCCCCEEEEECC------CCEEEEEeCC
Confidence 245799999888876554211 1111 112233332 4578887653 2357887764
No 235
>3oyo_A Hemopexin fold protein CP4; seeds, plant protein; 2.10A {Vigna unguiculata}
Probab=27.75 E-value=3.4e+02 Score=24.48 Aligned_cols=61 Identities=11% Similarity=0.090 Sum_probs=38.8
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC--CCCCCC------CcceeEEEEE--CCEEEEEecccCCCCcccc
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT--SGMVLS------PRAGHSTVAF--GKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~--~g~~p~------~R~~hs~~~~--~~~LyV~GG~~~~~~~~nd 164 (473)
++++|+|-| +..|+||..+++...-+- ....|. +..-.++... ++++|+|-|. .
T Consensus 127 ~gk~yfFkG--------~~yw~~d~~~~~~~~gPk~I~~~fpg~~~~~f~~~iDAAf~~~~~g~~YfFkG~--------~ 190 (225)
T 3oyo_A 127 GKEVYLFKG--------NKYVRIAYDSKQLVGNIRNIGDGFPVLNGTEFESGIDACFASHKEPEAYLFKGQ--------N 190 (225)
T ss_dssp TTEEEEEET--------TEEEEEETTTTEEEEEEEEHHHHCGGGTTSTTTTCCSEEEECSSTTEEEEEETT--------E
T ss_pred CCcEEEEeC--------CeEEEEECCCCeecCCCcchhhcCCCcccccCCCCcCEEEEeCCCCEEEEEECC--------E
Confidence 689999977 568999977766544210 001121 3333455553 6889999874 3
Q ss_pred EEEEeCC
Q 011998 165 LYMIDVD 171 (473)
Q Consensus 165 v~~yd~~ 171 (473)
.|+||..
T Consensus 191 ywr~d~~ 197 (225)
T 3oyo_A 191 YVRIDFT 197 (225)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 7899887
No 236
>3gre_A Serine/threonine-protein kinase VPS15; seven-bladed propeller, WD repeat, scaffold protein, ATP- binding, endosome, golgi apparatus; 1.80A {Saccharomyces cerevisiae}
Probab=27.39 E-value=4.1e+02 Score=25.25 Aligned_cols=108 Identities=11% Similarity=0.042 Sum_probs=56.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
++.+++.|+.+ ..+.+||+.+.+-...-.. +.....-.++.+ ++.+++.|+.++ .+.+
T Consensus 181 ~~~~l~~~~~d-----------~~i~iwd~~~~~~~~~~~~---~~h~~~v~~~~~s~~~~~l~s~~~dg------~i~i 240 (437)
T 3gre_A 181 EKSLLVALTNL-----------SRVIIFDIRTLERLQIIEN---SPRHGAVSSICIDEECCVLILGTTRG------IIDI 240 (437)
T ss_dssp SCEEEEEEETT-----------SEEEEEETTTCCEEEEEEC---CGGGCCEEEEEECTTSCEEEEEETTS------CEEE
T ss_pred CCCEEEEEeCC-----------CeEEEEeCCCCeeeEEEcc---CCCCCceEEEEECCCCCEEEEEcCCC------eEEE
Confidence 36777777742 4688999988754332211 101122233333 677788887653 4788
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEE-----CCEEEEEecccCCCCccccEEEEeCCCCcE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAF-----GKNLFVFGGFTDSQNLYDDLYMIDVDSGLW 175 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~-----~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W 175 (473)
||+.+.+....-. .+....-.+++.. ++.+++.|+. + ..+.+||+.+..-
T Consensus 241 wd~~~~~~~~~~~---~~~~~~v~~~~~~~~~s~~~~~l~s~~~-d-----g~i~iwd~~~~~~ 295 (437)
T 3gre_A 241 WDIRFNVLIRSWS---FGDHAPITHVEVCQFYGKNSVIVVGGSS-K-----TFLTIWNFVKGHC 295 (437)
T ss_dssp EETTTTEEEEEEB---CTTCEEEEEEEECTTTCTTEEEEEEEST-T-----EEEEEEETTTTEE
T ss_pred EEcCCccEEEEEe---cCCCCceEEEEeccccCCCccEEEEEcC-C-----CcEEEEEcCCCcE
Confidence 9988765433211 1111111111111 2335555554 2 2488899887653
No 237
>2xyi_A Probable histone-binding protein CAF1; transcription, repressor, phosphoprotein, WD-repeat; HET: PG4; 1.75A {Drosophila melanogaster} PDB: 3c99_A 3c9c_A 2yb8_B 2yba_A 2xu7_A* 3gfc_A 3cfs_B 3cfv_B
Probab=27.34 E-value=2.1e+02 Score=27.65 Aligned_cols=64 Identities=9% Similarity=0.028 Sum_probs=32.0
Q ss_pred EEEEeCCCCCCCccceEEEEECCCC---CEEEeeCCCCCCCCcceeEEEEE--CCEEEEEecccCCCCccccEEEEeCCC
Q 011998 98 IIVIGGEDGHDYYLSDVHILDTDTL---TWKELNTSGMVLSPRAGHSTVAF--GKNLFVFGGFTDSQNLYDDLYMIDVDS 172 (473)
Q Consensus 98 IyV~GG~~~~~~~~ndv~~yD~~t~---~W~~l~~~g~~p~~R~~hs~~~~--~~~LyV~GG~~~~~~~~ndv~~yd~~t 172 (473)
+++.|+.++ .+.+||+.+. .+..............-++++.. ++.+++.|+.. ..+.+||+.+
T Consensus 196 ~l~s~~~dg------~i~vwd~~~~~~~~~~~~~~~~~~~h~~~v~~v~~~p~~~~~l~s~~~d------g~i~i~d~~~ 263 (430)
T 2xyi_A 196 YLLSASDDH------TICLWDINATPKEHRVIDAKNIFTGHTAVVEDVAWHLLHESLFGSVADD------QKLMIWDTRN 263 (430)
T ss_dssp EEEEECTTS------CEEEEETTSCCBGGGEEECSEEECCCSSCEEEEEECSSCTTEEEEEETT------SEEEEEETTC
T ss_pred eEEEEeCCC------eEEEEeCCCCCCCCceeccceeecCCCCCEeeeEEeCCCCCEEEEEeCC------CeEEEEECCC
Confidence 777777543 4778888762 12111100000111122233333 34577776642 3488999886
Q ss_pred C
Q 011998 173 G 173 (473)
Q Consensus 173 ~ 173 (473)
.
T Consensus 264 ~ 264 (430)
T 2xyi_A 264 N 264 (430)
T ss_dssp S
T ss_pred C
Confidence 5
No 238
>3f3f_A Nucleoporin SEH1; structural protein, protein complex, nucleopori complex, nuclear pore complex, macromolecular assembly, MEM coat; 2.90A {Saccharomyces cerevisiae} PDB: 3f3g_A 3f3p_A 3ewe_A
Probab=27.14 E-value=3.3e+02 Score=24.17 Aligned_cols=106 Identities=15% Similarity=0.165 Sum_probs=53.0
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCC--CeEEEeecCCCCCCCceeeEEEEE----CCEEEEEeCCCCCCCccc
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTET--FVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLS 112 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t--~~W~~l~~~g~~P~~R~~hs~~~~----~~~IyV~GG~~~~~~~~n 112 (473)
++.+++.|+.+ ..+.+||..+ ..|+.+.... .....-.++.+ ++.+++.|+.++
T Consensus 22 ~~~~l~~~~~d-----------g~i~iw~~~~~~~~~~~~~~~~---~~~~~v~~~~~~~~~d~~~l~s~~~dg------ 81 (351)
T 3f3f_A 22 YGRHVATCSSD-----------QHIKVFKLDKDTSNWELSDSWR---AHDSSIVAIDWASPEYGRIIASASYDK------ 81 (351)
T ss_dssp SSSEEEEEETT-----------SEEEEEEECSSSCCEEEEEEEE---CCSSCEEEEEECCGGGCSEEEEEETTS------
T ss_pred CCCEEEEeeCC-----------CeEEEEECCCCCCcceecceec---cCCCcEEEEEEcCCCCCCEEEEEcCCC------
Confidence 45666777742 3577777664 3444443221 11112223333 267788887653
Q ss_pred eEEEEECCCC-------CEEEeeCCCCCCCCcce-eEEEEEC---CEEEEEecccCCCCccccEEEEeCCCC
Q 011998 113 DVHILDTDTL-------TWKELNTSGMVLSPRAG-HSTVAFG---KNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 113 dv~~yD~~t~-------~W~~l~~~g~~p~~R~~-hs~~~~~---~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
.+.+||+.+. .|..+.. ....... .+++... +.+++.|+.+ ..+.+||+.+.
T Consensus 82 ~v~vwd~~~~~~~~~~~~~~~~~~---~~~~~~~v~~~~~~~~~~~~~l~~~~~d------g~v~iwd~~~~ 144 (351)
T 3f3f_A 82 TVKLWEEDPDQEECSGRRWNKLCT---LNDSKGSLYSVKFAPAHLGLKLACLGND------GILRLYDALEP 144 (351)
T ss_dssp CEEEEEECTTSCTTSSCSEEEEEE---ECCCSSCEEEEEECCGGGCSEEEEEETT------CEEEEEECSST
T ss_pred eEEEEecCCCcccccccCcceeee---ecccCCceeEEEEcCCCCCcEEEEecCC------CcEEEecCCCh
Confidence 3667777653 3444433 1111122 2222322 4566676652 24888887664
No 239
>3fvz_A Peptidyl-glycine alpha-amidating monooxygenase; beta propeller, lyase, peptide amidation, HG-MAD, Zn-MAD, CL PAIR of basic residues; 2.35A {Rattus norvegicus} PDB: 3fw0_A*
Probab=25.82 E-value=3.9e+02 Score=24.58 Aligned_cols=160 Identities=11% Similarity=0.046 Sum_probs=84.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCC----CCCc-eeeEEEEE-C-CEEEEEeCCCCCCCcc
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNP----PSAR-DSHTCSSW-K-NKIIVIGGEDGHDYYL 111 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~----P~~R-~~hs~~~~-~-~~IyV~GG~~~~~~~~ 111 (473)
++.||+..++. ...+++||.....-..+...+.. +... .-+.++.. + +.|||.... .
T Consensus 154 ~g~lyv~d~~~----------~~~I~~~~~~g~~~~~~~~~g~~~~~~~~~~~~p~gia~d~~~g~l~v~d~~------~ 217 (329)
T 3fvz_A 154 TGAVFVSDGYC----------NSRIVQFSPSGKFVTQWGEESSGSSPRPGQFSVPHSLALVPHLDQLCVADRE------N 217 (329)
T ss_dssp TCCEEEEECSS----------CCEEEEECTTSCEEEEECEECCSSSCCTTEESCEEEEEEETTTTEEEEEETT------T
T ss_pred CCeEEEEeCCC----------CCeEEEEcCCCCEEEEeccCCCCCCCCCcccCCCcEEEEECCCCEEEEEECC------C
Confidence 57899988621 24688898655443333222111 1111 12344443 4 899998643 3
Q ss_pred ceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccC-CCCccccEEEEeCCCCcEEEEeeCCCCCCCcce
Q 011998 112 SDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTD-SQNLYDDLYMIDVDSGLWTKVITTGEGPSARFS 190 (473)
Q Consensus 112 ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~-~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~ 190 (473)
+.+.+||+.+.++...-.. ......-.+.+...+.+|+..|... .......+.++|+.+.+....-.. .+.....
T Consensus 218 ~~I~~~~~~~G~~~~~~~~--~~~~~~~~~~~~~pg~~~~~~g~~~v~~~~~~~v~~~~~~~g~~~~~~~~--~~~~~~~ 293 (329)
T 3fvz_A 218 GRIQCFKTDTKEFVREIKH--ASFGRNVFAISYIPGFLFAVNGKPYFGDQEPVQGFVMNFSSGEIIDVFKP--VRKHFDM 293 (329)
T ss_dssp TEEEEEETTTCCEEEEECC--TTTTTCEEEEEEETTEEEEEECCCCTTCSCCCCEEEEETTTCCEEEEECC--SSSCCSS
T ss_pred CEEEEEECCCCcEEEEEec--cccCCCcceeeecCCEEEEeCCCEEeccCCCcEEEEEEcCCCeEEEEEcC--CCCccCC
Confidence 5789999987776544321 1112222234444577777776421 122345799999888876544221 1111112
Q ss_pred eeEEEeccccCCEEEEEcccCCCCCccCcEEEEEcc
Q 011998 191 VAGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTG 226 (473)
Q Consensus 191 ~~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~ 226 (473)
..++.++ .++.|||....+. .++.|+..
T Consensus 294 p~~ia~~--~dG~lyvad~~~~------~I~~~~~~ 321 (329)
T 3fvz_A 294 PHDIVAS--EDGTVYIGDAHTN------TVWKFTLT 321 (329)
T ss_dssp EEEEEEC--TTSEEEEEESSSC------CEEEEEEE
T ss_pred eeEEEEC--CCCCEEEEECCCC------EEEEEeCC
Confidence 2344443 4668888754333 46676654
No 240
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=24.95 E-value=2.6e+02 Score=25.62 Aligned_cols=111 Identities=10% Similarity=0.064 Sum_probs=57.6
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE----CCEEEEEeCCCCCCCccceE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW----KNKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~----~~~IyV~GG~~~~~~~~ndv 114 (473)
+++.++.|+.+ ..+.+||+.+.....+.... .....-.++.+ ++.+++.|+.++ .+
T Consensus 24 ~g~~lasgs~D-----------~~v~lwd~~~~~~~~~~~l~---gH~~~V~~v~~~~~~~~~~l~s~s~D~------~v 83 (316)
T 3bg1_A 24 YGTRLATCSSD-----------RSVKIFDVRNGGQILIADLR---GHEGPVWQVAWAHPMYGNILASCSYDR------KV 83 (316)
T ss_dssp GGCEEEEEETT-----------TEEEEEEEETTEEEEEEEEE---CCSSCEEEEEECCGGGSSCEEEEETTS------CE
T ss_pred CCCEEEEEeCC-----------CeEEEEEecCCCcEEEEEEc---CCCccEEEEEeCCCCCCCEEEEEECCC------EE
Confidence 46677777742 35778888776543332221 01111222233 256777777653 37
Q ss_pred EEEECCCCCEEEeeCCCCCCCCc-ceeEEEEEC---CEEEEEecccCCCCccccEEEEeCCCC-cEEEE
Q 011998 115 HILDTDTLTWKELNTSGMVLSPR-AGHSTVAFG---KNLFVFGGFTDSQNLYDDLYMIDVDSG-LWTKV 178 (473)
Q Consensus 115 ~~yD~~t~~W~~l~~~g~~p~~R-~~hs~~~~~---~~LyV~GG~~~~~~~~ndv~~yd~~t~-~W~~v 178 (473)
.+||+.+..|..+.. +.... .-.+++... +.+++.|+.+ ..+.+||+... .|...
T Consensus 84 ~iWd~~~~~~~~~~~---~~~h~~~V~~v~~~p~~~g~~lasgs~D------~~i~lwd~~~~~~~~~~ 143 (316)
T 3bg1_A 84 IIWREENGTWEKSHE---HAGHDSSVNSVCWAPHDYGLILACGSSD------GAISLLTYTGEGQWEVK 143 (316)
T ss_dssp EEECCSSSCCCEEEE---ECCCSSCCCEEEECCTTTCSCEEEECSS------SCEEEEEECSSSCEEEC
T ss_pred EEEECCCCcceEEEE---ccCCCCceEEEEECCCCCCcEEEEEcCC------CCEEEEecCCCCCccee
Confidence 788888877755432 11111 112223322 4466666652 23777777665 57543
No 241
>2pm7_B Protein transport protein SEC13, protein transport protein SEC31; beta propeller, alpha solenoid; 2.35A {Saccharomyces cerevisiae} PDB: 2pm9_B 2pm6_B 3iko_A 3mzk_A 3mzl_A
Probab=24.63 E-value=3.9e+02 Score=24.07 Aligned_cols=122 Identities=14% Similarity=0.152 Sum_probs=0.0
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCe--EEEeecCCCCCCCceeeEEEEEC--CEEEEEeCCCCCCCccceE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFV--WKRATTSGNPPSARDSHTCSSWK--NKIIVIGGEDGHDYYLSDV 114 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~--W~~l~~~g~~P~~R~~hs~~~~~--~~IyV~GG~~~~~~~~ndv 114 (473)
++++++.||.+ ..+.+||..+.. |..+........+-..-+..-.+ +.+++.|+.++. +
T Consensus 169 ~~~~l~sgs~D-----------~~v~lwd~~~~~~~~~~~~~l~~H~~~V~~v~~sp~~~~~~~las~s~D~~------v 231 (297)
T 2pm7_B 169 ESRKFVTGGAD-----------NLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRT------C 231 (297)
T ss_dssp -CCEEEEEETT-----------SCEEEEEEETTTTEEEEEEEECCCSSCEEEEEECCCCSSSEEEEEEETTSC------E
T ss_pred CcceEEEEcCC-----------CcEEEEEEcCCCceEEEEEEecCCCCceEEEEECCCCCCceEEEEEECCCc------E
Q ss_pred EEEECCC--CCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCC-CCcEEEEeeCCC
Q 011998 115 HILDTDT--LTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVD-SGLWTKVITTGE 183 (473)
Q Consensus 115 ~~yD~~t--~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~-t~~W~~v~~~g~ 183 (473)
.+||+.+ ..|.................+...++++++.||.+.. +.+|+.. .+.|..+....+
T Consensus 232 ~iWd~~~~~~~~~~~~~~~~~~~~~v~~~~~s~~g~~las~~~D~~------v~lw~~~~~g~w~~~~~~~~ 297 (297)
T 2pm7_B 232 IIWTQDNEQGPWKKTLLKEEKFPDVLWRASWSLSGNVLALSGGDNK------VTLWKENLEGKWEPAGEVHQ 297 (297)
T ss_dssp EEEEESSTTSCCEEEESSSSCCSSCEEEEEECSSSCCEEEEETTSC------EEEEEECTTSCEEEC-----
T ss_pred EEEEeCCCCCccceeeeecccCCCcEEEEEECCCCCEEEEEcCCCc------EEEEEECCCCcEEecccccC
No 242
>1npe_A Nidogen, entactin; glycoprotein, basement membrane, beta-propeller, EGF-like, structural protein; 2.30A {Mus musculus} SCOP: b.68.5.1
Probab=23.56 E-value=3.8e+02 Score=23.66 Aligned_cols=110 Identities=7% Similarity=0.004 Sum_probs=62.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccceEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHI 116 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~ 116 (473)
+++||+..... ....++++++....-+.+... .. ..-..++.. ++.||+.-. ..+.+++
T Consensus 133 ~g~lyv~~~~~---------~~~~I~~~~~dg~~~~~~~~~---~~-~~P~gia~d~~~~~lyv~d~------~~~~I~~ 193 (267)
T 1npe_A 133 RGNLYWTDWNR---------DNPKIETSHMDGTNRRILAQD---NL-GLPNGLTFDAFSSQLCWVDA------GTHRAEC 193 (267)
T ss_dssp TTEEEEEECCS---------SSCEEEEEETTSCCCEEEECT---TC-SCEEEEEEETTTTEEEEEET------TTTEEEE
T ss_pred CCEEEEEECCC---------CCcEEEEEecCCCCcEEEEEC---CC-CCCcEEEEcCCCCEEEEEEC------CCCEEEE
Confidence 57899886421 124688888765443333221 11 122344443 578998743 2467999
Q ss_pred EECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCccccEEEEeCCCCcEEEE
Q 011998 117 LDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKV 178 (473)
Q Consensus 117 yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v 178 (473)
||+.+..-..+... ...| +.++..++.||+.-.. .+.++++|+.+.+-...
T Consensus 194 ~~~~g~~~~~~~~~--~~~P---~gi~~d~~~lyva~~~------~~~v~~~d~~~g~~~~~ 244 (267)
T 1npe_A 194 LNPAQPGRRKVLEG--LQYP---FAVTSYGKNLYYTDWK------TNSVIAMDLAISKEMDT 244 (267)
T ss_dssp EETTEEEEEEEEEC--CCSE---EEEEEETTEEEEEETT------TTEEEEEETTTTEEEEE
T ss_pred EecCCCceEEEecC--CCCc---eEEEEeCCEEEEEECC------CCeEEEEeCCCCCceEE
Confidence 99876433333221 2222 3445568889986432 24689999988765433
No 243
>3hxj_A Pyrrolo-quinoline quinone; all beta protein. incomplete 8-blade beta-propeller., struct genomics, PSI-2, protein structure initiative; 2.00A {Methanococcus maripaludis}
Probab=23.30 E-value=4.1e+02 Score=23.89 Aligned_cols=101 Identities=19% Similarity=0.267 Sum_probs=51.2
Q ss_pred ECCEEEEEecCCCCCCCCCceeeCeEEEEECC-CCeEEEeecCCCCCCCceeeEEEEE-CCEEEEEeCCCCCCCccceEE
Q 011998 38 VGKRLFIFGGCGKSSNTNDEVYYNDLYILNTE-TFVWKRATTSGNPPSARDSHTCSSW-KNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 38 ~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~-t~~W~~l~~~g~~P~~R~~hs~~~~-~~~IyV~GG~~~~~~~~ndv~ 115 (473)
.++.||+... ...+++||+. ...|...... + ...+.+.. ++.||+ |.. -..++
T Consensus 106 ~~~~l~v~t~------------~~~l~~~d~~g~~~~~~~~~~---~---~~~~~~~~~~g~l~v-gt~------~~~l~ 160 (330)
T 3hxj_A 106 FEDILYVTSM------------DGHLYAINTDGTEKWRFKTKK---A---IYATPIVSEDGTIYV-GSN------DNYLY 160 (330)
T ss_dssp ETTEEEEECT------------TSEEEEECTTSCEEEEEECSS---C---CCSCCEECTTSCEEE-ECT------TSEEE
T ss_pred ECCEEEEEec------------CCEEEEEcCCCCEEEEEcCCC---c---eeeeeEEcCCCEEEE-EcC------CCEEE
Confidence 3778877432 1358889887 3456544221 1 12222344 567776 332 25688
Q ss_pred EEECCCC-CEEEeeCCCCCCCCcceeEEEE-ECCEEEEEecccCCCCccccEEEEeCCC-CcEEEE
Q 011998 116 ILDTDTL-TWKELNTSGMVLSPRAGHSTVA-FGKNLFVFGGFTDSQNLYDDLYMIDVDS-GLWTKV 178 (473)
Q Consensus 116 ~yD~~t~-~W~~l~~~g~~p~~R~~hs~~~-~~~~LyV~GG~~~~~~~~ndv~~yd~~t-~~W~~v 178 (473)
+||.... .|..... ... ..+.+. .++.||+-. ..+++||... ..|+..
T Consensus 161 ~~d~~g~~~~~~~~~-----~~~-~~~~~~d~~g~l~v~t---------~~l~~~d~~g~~~~~~~ 211 (330)
T 3hxj_A 161 AINPDGTEKWRFKTN-----DAI-TSAASIGKDGTIYFGS---------DKVYAINPDGTEKWNFY 211 (330)
T ss_dssp EECTTSCEEEEEECS-----SCC-CSCCEECTTCCEEEES---------SSEEEECTTSCEEEEEC
T ss_pred EECCCCCEeEEEecC-----CCc-eeeeEEcCCCEEEEEe---------CEEEEECCCCcEEEEEc
Confidence 9998722 2544321 111 122233 255676643 3488898432 245543
No 244
>3hx6_A Type 4 fimbrial biogenesis protein PILY1; beta propeller, pilus protein, cell adhesion; 2.10A {Pseudomonas aeruginosa}
Probab=23.18 E-value=6.6e+02 Score=26.25 Aligned_cols=151 Identities=15% Similarity=0.232 Sum_probs=0.0
Q ss_pred EEEEEecCCCCCCCCCceeeCeEEEEECCC-----CeEEEeecC-CCCCCCceeeEEEEE--CCEEEEEeCCCCCCCccc
Q 011998 41 RLFIFGGCGKSSNTNDEVYYNDLYILNTET-----FVWKRATTS-GNPPSARDSHTCSSW--KNKIIVIGGEDGHDYYLS 112 (473)
Q Consensus 41 ~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t-----~~W~~l~~~-g~~P~~R~~hs~~~~--~~~IyV~GG~~~~~~~~n 112 (473)
+.+++||+...+ +.+|.+|+.+ --|+.-... .++-........+.+ +.-+.|||+--....--.
T Consensus 152 rtvLvggmg~GG--------~~~yALDVT~P~~p~~LWe~~~~~~~~LG~t~s~P~I~~~~~g~w~~vfG~GY~~~~~~~ 223 (570)
T 3hx6_A 152 HTVLIGSLRAGG--------KGLFALDVTDPANIKLLWEIGVDQEPDLGYSFPKPTVARLHNGKWAVVTGNGYSSMNDKA 223 (570)
T ss_dssp EEEEEEECTTSC--------SEEEEEECSSGGGCEEEEEEETTTCTTCCBCCSCCEEEECTTSSEEEEEECCBSCTTCCE
T ss_pred eEEEEEecCCCC--------cEEEEEECCCCCCCceeEEECCCCccccCccccCCEEEEecCCCEEEEEccccCCCCCcc
Q ss_pred eEEEEECCCCC-EEEeeCCCCCCCCcceeEEEEEC-------CEEEE--EecccCCCCccccEEEEeCCCC---------
Q 011998 113 DVHILDTDTLT-WKELNTSGMVLSPRAGHSTVAFG-------KNLFV--FGGFTDSQNLYDDLYMIDVDSG--------- 173 (473)
Q Consensus 113 dv~~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~~-------~~LyV--~GG~~~~~~~~ndv~~yd~~t~--------- 173 (473)
.+|++|..+.. -.++...+....+..-...++++ +.+|. .+|. ||++|+...
T Consensus 224 ~Lyv~d~~tG~li~~i~~~~~~~~~~Gls~~~~~D~d~Dg~~D~~YaGDl~Gn---------lWRfDl~~~~~~~~~~~~ 294 (570)
T 3hx6_A 224 ALLIIDMETGAITRKLEVTGRTGVPNGLSSPRLADNNSDGVADYAYAGDLQGN---------LWRFDLIAGKVNQDDPFS 294 (570)
T ss_dssp EEEEEETTTCCEEEEEEECCSTTSCCCEEEEEEECTTSSSBCCEEEEEETTSE---------EEEEECSCSSCCTTSTTC
T ss_pred EEEEEECCCCceEEEEecCCCCccCCccccceEEecCCCCceeEEEEEeCCCc---------EEEEEcCCCCcccccccc
Q ss_pred ----------cEE---------EEeeCCCCCCCcceeeEEEeccccCCEEEEEc
Q 011998 174 ----------LWT---------KVITTGEGPSARFSVAGDCLDPLKGGVLVFIG 208 (473)
Q Consensus 174 ----------~W~---------~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~G 208 (473)
.|. ..........|-...-.+...+...+.+++||
T Consensus 295 ~~~~~~~~~s~w~v~~~~~plf~a~d~~g~~QPITaaP~v~~~~~~~g~~V~FG 348 (570)
T 3hx6_A 295 RANDGPAVASSFRVSFGGQPLYSAVDSAGAAQAITAAPSLVRHPTRKGYIVIFG 348 (570)
T ss_dssp CTTCSGGGGGGCEESGGGCCSEECBCTTSCBCCCCSCCEEEECTTSSSEEEEEE
T ss_pred cccccccccccceeccCCcceEEEecCCCCCCCEEcCceEEEcCCCCcEEEEEe
No 245
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=23.03 E-value=6.7e+02 Score=26.26 Aligned_cols=111 Identities=6% Similarity=-0.097 Sum_probs=52.3
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccce--EEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGH--SAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPP 83 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~h--sa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P 83 (473)
.++.||+.+++=..+-.......-.... -+..-+++.++++..... ........++|+||+.+++..++... +
T Consensus 37 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Spdg~~l~~~~~~~~--~~r~~~~~~~~~~d~~~~~~~~l~~~---~ 111 (740)
T 4a5s_A 37 NILVFNAEYGNSSVFLENSTFDEFGHSINDYSISPDGQFILLEYNYVK--QWRHSYTASYDIYDLNKRQLITEERI---P 111 (740)
T ss_dssp EEEEEETTTCCEEEEECTTTTTTCCSCCCEEEECTTSSEEEEEEEEEE--CSSSCEEEEEEEEETTTTEECCSSCC---C
T ss_pred cEEEEECCCCceEEEEechhhhhhcccccceEECCCCCEEEEEECCee--eEEEccceEEEEEECCCCcEEEcccC---C
Confidence 5888998888654432111111000001 112224444444442110 01122457899999999976554321 2
Q ss_pred CCceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeC
Q 011998 84 SARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNT 129 (473)
Q Consensus 84 ~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~ 129 (473)
. .......+-+++.++|+- -+++|++|..+..-.++..
T Consensus 112 ~-~~~~~~~SPdG~~la~~~-------~~~i~~~~~~~~~~~~lt~ 149 (740)
T 4a5s_A 112 N-NTQWVTWSPVGHKLAYVW-------NNDIYVKIEPNLPSYRITW 149 (740)
T ss_dssp T-TEEEEEECSSTTCEEEEE-------TTEEEEESSTTSCCEECCS
T ss_pred C-cceeeEECCCCCEEEEEE-------CCeEEEEECCCCceEEEcC
Confidence 1 122222222444344431 1468888877766555543
No 246
>4g56_B MGC81050 protein; protein arginine methyltransferase, protein complexes, histo methylation, transferase; HET: SAH; 2.95A {Xenopus laevis}
Probab=22.95 E-value=2.1e+02 Score=26.94 Aligned_cols=28 Identities=0% Similarity=0.068 Sum_probs=17.7
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCCC
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDTL 122 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t~ 122 (473)
++++++.|+.+.....-..+++|+..+.
T Consensus 53 DG~~las~s~d~~~~wd~~v~~~~~~~~ 80 (357)
T 4g56_B 53 DGALLLAASSLSSRTWGGSIWVFKDPEG 80 (357)
T ss_dssp SSCEEEEEECSSSSSCCEEEEEESSCC-
T ss_pred CCCEEEEEcCCCCccccCeEEEEECCCC
Confidence 7888888886644322345788876554
No 247
>2p9w_A MAL S 1 allergenic protein; beta propeller; 1.35A {Malassezia sympodialis}
Probab=22.64 E-value=5.3e+02 Score=24.94 Aligned_cols=130 Identities=13% Similarity=0.155 Sum_probs=67.5
Q ss_pred CcEEEEECCCC---eEEecccCCCCCCcccce-EEEEE--CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeec
Q 011998 5 RDLHILDTSSH---TWISPSVRGEGPEAREGH-SAALV--GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATT 78 (473)
Q Consensus 5 ~dv~~yD~~t~---~W~~l~~~~~~P~~R~~h-sa~~~--~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~ 78 (473)
+.|+++++... .|... .+....|.+. .++.. ++.|++..+ . ..+++||+.+.....++.
T Consensus 159 ~~I~rV~pdG~~~~~~~~~---~~~~~~~~G~nGIv~~pdg~~Liv~~~-~-----------g~L~~fD~~~pv~~~v~~ 223 (334)
T 2p9w_A 159 PAIARVSADGKTVSTFAWE---SGNGGQRPGYSGITFDPHSNKLIAFGG-P-----------RALTAFDVSKPYAWPEPV 223 (334)
T ss_dssp CEEEEECTTSCCEEEEEEC---CCCSSSCCSCSEEEEETTTTEEEEESS-S-----------SSEEEEECSSSSCCCEEC
T ss_pred CeEEEEeCCCCEEeeeeec---CCCcccccCcceEEEeCCCCEEEEEcC-C-----------CeEEEEcCCCCcceeecc
Confidence 56888888754 25432 1222334443 55555 446777755 2 468999988543312322
Q ss_pred C--CCC-CCC-ceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCC---CcceeEEEE----ECC
Q 011998 79 S--GNP-PSA-RDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLS---PRAGHSTVA----FGK 147 (473)
Q Consensus 79 ~--g~~-P~~-R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~---~R~~hs~~~----~~~ 147 (473)
. |.. ... -..-.....+++++++.-. .+..+++-...+ |+.....+..|. ++...+.+. .++
T Consensus 224 ~~~G~~~~~~~~dgilp~~~~G~vllV~~~------~~~~~~l~S~Dg-W~sa~~~g~~~~~~~~~g~tt~t~~~~~~~~ 296 (334)
T 2p9w_A 224 KINGDFGTLSGTEKIVTVPVGNESVLVGAR------APYAISFRSWDN-WKSANIKKTKRSELQNSGFTAVADYYQGSEQ 296 (334)
T ss_dssp EESSCCCCCTTEEEEEEEEETTEEEEEEEE------TTEEEEEECSST-TSEEEEEEEECGGGGSSCEEEEEEEEETTEE
T ss_pred cccCCcccccCcccccccccCCEEEEEEcC------CCCEEEEECCCC-cceeEEeeeecCccccCceeEEEEeccccCC
Confidence 1 211 111 1221223368888555432 234455555555 987765444443 344444444 467
Q ss_pred EEEEEeccc
Q 011998 148 NLFVFGGFT 156 (473)
Q Consensus 148 ~LyV~GG~~ 156 (473)
+||+..++-
T Consensus 297 ~iYvv~~~f 305 (334)
T 2p9w_A 297 GLYAVSAFF 305 (334)
T ss_dssp EEEEEECCG
T ss_pred eEEEEeeec
Confidence 899988763
No 248
>3bg1_A Protein SEC13 homolog; NPC, transport, WD repeat, autocatalytic cleavage, mRNA transport, nuclear pore complex, nucleus, phosphoprotein; 3.00A {Homo sapiens} PDB: 3bg0_A
Probab=22.57 E-value=2.3e+02 Score=26.09 Aligned_cols=100 Identities=16% Similarity=0.210 Sum_probs=49.7
Q ss_pred CCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEE----CCEEEEEecccCCCCccccEEEEeC
Q 011998 95 KNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAF----GKNLFVFGGFTDSQNLYDDLYMIDV 170 (473)
Q Consensus 95 ~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~----~~~LyV~GG~~~~~~~~ndv~~yd~ 170 (473)
++++++.|+.++ .+.+||+.+.....+.. +......-..+.+ ++.+++.|+.+ ..+.+||+
T Consensus 24 ~g~~lasgs~D~------~v~lwd~~~~~~~~~~~---l~gH~~~V~~v~~~~~~~~~~l~s~s~D------~~v~iWd~ 88 (316)
T 3bg1_A 24 YGTRLATCSSDR------SVKIFDVRNGGQILIAD---LRGHEGPVWQVAWAHPMYGNILASCSYD------RKVIIWRE 88 (316)
T ss_dssp GGCEEEEEETTT------EEEEEEEETTEEEEEEE---EECCSSCEEEEEECCGGGSSCEEEEETT------SCEEEECC
T ss_pred CCCEEEEEeCCC------eEEEEEecCCCcEEEEE---EcCCCccEEEEEeCCCCCCCEEEEEECC------CEEEEEEC
Confidence 566777777543 46677776654433321 1111111122222 24577777752 24888999
Q ss_pred CCCcEEEEeeCCCCCCCcceeeEEEeccccCCEEEEEcccCC
Q 011998 171 DSGLWTKVITTGEGPSARFSVAGDCLDPLKGGVLVFIGGCNK 212 (473)
Q Consensus 171 ~t~~W~~v~~~g~~P~~R~~~~a~~~~~~~~~~l~v~GG~~~ 212 (473)
.+..|..+....... ....++.+.+...+.+++.|+.+.
T Consensus 89 ~~~~~~~~~~~~~h~---~~V~~v~~~p~~~g~~lasgs~D~ 127 (316)
T 3bg1_A 89 ENGTWEKSHEHAGHD---SSVNSVCWAPHDYGLILACGSSDG 127 (316)
T ss_dssp SSSCCCEEEEECCCS---SCCCEEEECCTTTCSCEEEECSSS
T ss_pred CCCcceEEEEccCCC---CceEEEEECCCCCCcEEEEEcCCC
Confidence 888776554321111 111223332222256777777665
No 249
>2ynn_A Coatomer subunit beta'; protein transport, peptide binding protein, membrane traffic COPI-mediated trafficking, dilysine motifs; 1.78A {Saccharomyces cerevisiae} PDB: 2yno_A
Probab=22.28 E-value=4.3e+02 Score=23.80 Aligned_cols=105 Identities=12% Similarity=0.033 Sum_probs=54.1
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCCceeeEEEEECCEEEEEeCCCCCCCccceEEEEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILD 118 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD 118 (473)
++.+++.|+.+ ..+.+||..+..-...-.. ...........-++.+++.|+.+ ..+.+||
T Consensus 24 ~~~~l~s~~~d-----------g~v~lWd~~~~~~~~~~~~---~~~~v~~~~~~~~~~~l~s~s~d------~~i~vwd 83 (304)
T 2ynn_A 24 TEPWVLTTLYS-----------GRVELWNYETQVEVRSIQV---TETPVRAGKFIARKNWIIVGSDD------FRIRVFN 83 (304)
T ss_dssp SSSEEEEEETT-----------SEEEEEETTTTEEEEEEEC---CSSCEEEEEEEGGGTEEEEEETT------SEEEEEE
T ss_pred CCCEEEEEcCC-----------CcEEEEECCCCceeEEeec---cCCcEEEEEEeCCCCEEEEECCC------CEEEEEE
Confidence 45667777742 3588889988754332211 11111111222256677777754 3578889
Q ss_pred CCCCCEEEeeCCCCCCCCcceeEEEEE-CCEEEEEecccCCCCccccEEEEeCCCC
Q 011998 119 TDTLTWKELNTSGMVLSPRAGHSTVAF-GKNLFVFGGFTDSQNLYDDLYMIDVDSG 173 (473)
Q Consensus 119 ~~t~~W~~l~~~g~~p~~R~~hs~~~~-~~~LyV~GG~~~~~~~~ndv~~yd~~t~ 173 (473)
..+.+-...-. .....-.+++.. ++.+++.|+.+ ..+.+||+.+.
T Consensus 84 ~~~~~~~~~~~----~h~~~v~~~~~~~~~~~l~sgs~D------~~v~lWd~~~~ 129 (304)
T 2ynn_A 84 YNTGEKVVDFE----AHPDYIRSIAVHPTKPYVLSGSDD------LTVKLWNWENN 129 (304)
T ss_dssp TTTCCEEEEEE----CCSSCEEEEEECSSSSEEEEEETT------SCEEEEEGGGT
T ss_pred CCCCcEEEEEe----CCCCcEEEEEEcCCCCEEEEECCC------CeEEEEECCCC
Confidence 88765322111 111112223333 34566677652 24788887765
No 250
>3lrv_A PRE-mRNA-splicing factor 19; PRP19, WD40, E3 ubiquitin ligase, spliceosome, DNA damage, D repair, mRNA processing, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=22.20 E-value=4.6e+02 Score=24.05 Aligned_cols=150 Identities=13% Similarity=0.061 Sum_probs=72.4
Q ss_pred CCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEE-EeecCCCCCCCcee--eEEEEECCEEEEEeCCCCCCCccceEE
Q 011998 39 GKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWK-RATTSGNPPSARDS--HTCSSWKNKIIVIGGEDGHDYYLSDVH 115 (473)
Q Consensus 39 ~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~-~l~~~g~~P~~R~~--hs~~~~~~~IyV~GG~~~~~~~~ndv~ 115 (473)
++.+++.||.+ ..+.+||..+.+-. .+.. +..-.-... ...+..++.+.+.-. ...+.
T Consensus 47 d~~~l~sg~~D-----------g~v~iwd~~~~~~~~~~~~-~~v~~~~~~~~~~s~s~D~~i~~w~~-------~~~~~ 107 (343)
T 3lrv_A 47 DKWVCMCRCED-----------GALHFTQLKDSKTITTITT-PNPRTGGEHPAIISRGPCNRLLLLYP-------GNQIT 107 (343)
T ss_dssp EEEEEEEEEET-----------TEEEEEEESSSSCEEEEEE-ECCCTTCCCCSEEEECSTTEEEEEET-------TTEEE
T ss_pred CCCEEEEECCC-----------CcEEEEECCCCcEEEEEec-CCceeeeeCCceEEecCCCeEEEEEc-------cCceE
Confidence 46778888842 35788888765422 1111 000000000 111122445554422 23567
Q ss_pred EEECCCCC-EEEeeCCCCCCCCcceeEEEEE---CCEEEEEecccCCCCccccEEEEeCCCCcEEEEeeCCCCCCCccee
Q 011998 116 ILDTDTLT-WKELNTSGMVLSPRAGHSTVAF---GKNLFVFGGFTDSQNLYDDLYMIDVDSGLWTKVITTGEGPSARFSV 191 (473)
Q Consensus 116 ~yD~~t~~-W~~l~~~g~~p~~R~~hs~~~~---~~~LyV~GG~~~~~~~~ndv~~yd~~t~~W~~v~~~g~~P~~R~~~ 191 (473)
+||..+.+ ...... .....-.++... ++.+++.|+.+ ..+.+||+.+..-..+... ..... .
T Consensus 108 ~~~~~~~~~~~~~~~----~~~~~v~~~~~~~~~~~~~l~s~s~d------g~i~~wd~~~~~~~~~~~~---~~~~~-i 173 (343)
T 3lrv_A 108 ILDSKTNKVLREIEV----DSANEIIYMYGHNEVNTEYFIWADNR------GTIGFQSYEDDSQYIVHSA---KSDVE-Y 173 (343)
T ss_dssp EEETTTCCEEEEEEC----CCSSCEEEEECCC---CCEEEEEETT------CCEEEEESSSSCEEEEECC---CSSCC-C
T ss_pred EeecCCcceeEEeec----CCCCCEEEEEcCCCCCCCEEEEEeCC------CcEEEEECCCCcEEEEEec---CCCCc-e
Confidence 78887776 333331 111111122222 34567777752 2488999988776443321 11111 1
Q ss_pred eEEEeccccCCEEEEEcccCCCCCccCcEEEEEccccc
Q 011998 192 AGDCLDPLKGGVLVFIGGCNKSLEALDDMYYLYTGLVN 229 (473)
Q Consensus 192 ~a~~~~~~~~~~l~v~GG~~~~~~~~~dv~~ld~~~~~ 229 (473)
.++.+. .++.+++.|+.+. .+.++|.....
T Consensus 174 ~~~~~~--pdg~~lasg~~dg------~i~iwd~~~~~ 203 (343)
T 3lrv_A 174 SSGVLH--KDSLLLALYSPDG------ILDVYNLSSPD 203 (343)
T ss_dssp CEEEEC--TTSCEEEEECTTS------CEEEEESSCTT
T ss_pred EEEEEC--CCCCEEEEEcCCC------EEEEEECCCCC
Confidence 222232 4678888887665 36777776543
No 251
>4ggc_A P55CDC, cell division cycle protein 20 homolog; cell cycle, mitosis, securin, ubiquitination, WD40; HET: MRD; 1.35A {Homo sapiens}
Probab=22.17 E-value=4.1e+02 Score=23.49 Aligned_cols=139 Identities=14% Similarity=0.078 Sum_probs=0.0
Q ss_pred CcEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCC
Q 011998 5 RDLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPS 84 (473)
Q Consensus 5 ~dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~ 84 (473)
+.|.++|..+++..+.-.. ..+.......+..-+++.++.|+ .-..+.+||..+.+-......
T Consensus 45 ~tV~iWd~~tg~~~~~~~~-~~~~~~V~~v~~~~~~~~l~sgs-----------~Dg~v~iw~~~~~~~~~~~~~----- 107 (318)
T 4ggc_A 45 NSVYLWSASSGDILQLLQM-EQPGEYISSVAWIKEGNYLAVGT-----------SSAEVQLWDVQQQKRLRNMTS----- 107 (318)
T ss_dssp TEEEEEETTTCCEEEEEEC-CSTTCCEEEEEECTTSSEEEEEE-----------TTSEEEEEETTTTEEEEEEEC-----
T ss_pred CEEEEEECCCCCEEEEEEe-cCCCCeEEEEEECCCCCEEEEEE-----------CCCcEEEeecCCceeEEEecC-----
Q ss_pred CceeeEEEEECCEEEEEeCCCCCCCccceEEEEECCCCCEEEeeCCCCCCCCcceeEEEEECCEEEEEecccCCCCcccc
Q 011998 85 ARDSHTCSSWKNKIIVIGGEDGHDYYLSDVHILDTDTLTWKELNTSGMVLSPRAGHSTVAFGKNLFVFGGFTDSQNLYDD 164 (473)
Q Consensus 85 ~R~~hs~~~~~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~~l~~~g~~p~~R~~hs~~~~~~~LyV~GG~~~~~~~~nd 164 (473)
......+....+.+++.|+ ....+..++..+........ ...............+++++.|+.+..
T Consensus 108 h~~~~~~~~~~~~~l~s~~------~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~s~~~d~~------ 173 (318)
T 4ggc_A 108 HSARVGSLSWNSYILSSGS------RSGHIHHHDVRVAEHHVATL--SGHSQEVCGLRWAPDGRHLASGGNDNL------ 173 (318)
T ss_dssp CSSCEEEEEEETTEEEEEE------TTSEEEEEETTSSSCEEEEE--ECCSSCEEEEEECTTSSEEEEEETTSC------
T ss_pred ccceEEEeecCCCEEEEEe------cCCceEeeecCCCceeEEEE--cCccCceEEEEEcCCCCEEEEEecCcc------
Q ss_pred EEEEeCCCCc
Q 011998 165 LYMIDVDSGL 174 (473)
Q Consensus 165 v~~yd~~t~~ 174 (473)
+.+||+.+.+
T Consensus 174 i~iwd~~~~~ 183 (318)
T 4ggc_A 174 VNVWPSAPGE 183 (318)
T ss_dssp EEEEESSCBT
T ss_pred eeEEECCCCc
No 252
>4a5s_A Dipeptidyl peptidase 4 soluble form; hydrolase, type 2 diabetes, novartis compound NVP-BIV988; HET: N7F NAG MAN; 1.62A {Homo sapiens} PDB: 2qjr_A* 3f8s_A* 2qt9_A* 2qtb_A* 2rip_A* 1tk3_A* 1n1m_A* 1nu8_A* 1rwq_A* 1nu6_A* 1tkr_A* 1w1i_A* 2ajl_I* 2bgn_A* 2bub_A* 2ogz_A* 2ole_A* 2oqi_A* 3bjm_A* 3eio_A* ...
Probab=20.86 E-value=3.6e+02 Score=28.47 Aligned_cols=61 Identities=13% Similarity=0.068 Sum_probs=31.4
Q ss_pred ceEEEEECCC---C---CEEEeeCCCCC-CCCcceeE-EEEECCEEEEEecccCCCCccccEEEEeCCCCc
Q 011998 112 SDVHILDTDT---L---TWKELNTSGMV-LSPRAGHS-TVAFGKNLFVFGGFTDSQNLYDDLYMIDVDSGL 174 (473)
Q Consensus 112 ndv~~yD~~t---~---~W~~l~~~g~~-p~~R~~hs-~~~~~~~LyV~GG~~~~~~~~ndv~~yd~~t~~ 174 (473)
..++++|+.+ . ++..+...... ....+-.. ...-+++++++--... .-...++.+|+.+++
T Consensus 228 ~~l~v~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~wspdg~~~~~~~~r~--~~~~~i~~~d~~tg~ 296 (740)
T 4a5s_A 228 VKFFVVNTDSLSSVTNATSIQITAPASMLIGDHYLCDVTWATQERISLQWLRRI--QNYSVMDICDYDESS 296 (740)
T ss_dssp EEEEEEETTSCCSSSCCCEEEECCCHHHHTSCEEEEEEEEEETTEEEEEEEESS--TTEEEEEEEEEETTT
T ss_pred eEEEEEECCCCCCCCcceEEEecCCccCCCCCeEEEEEEEeCCCeEEEEEeCCC--CCEEEEEEEECCCCc
Confidence 3689999998 7 77777531000 01111111 1233677555432211 123458888887765
No 253
>3o4h_A Acylamino-acid-releasing enzyme; alpha/beta hydrolase fold, beta propeller, hydrolase, oligop SIZE selectivity; HET: GOL; 1.82A {Aeropyrum pernix} PDB: 3o4i_A 3o4j_A 2hu5_A* 1ve7_A* 1ve6_A* 2hu7_A* 3o4g_A 2hu8_A* 2qr5_A 2qzp_A
Probab=20.77 E-value=1.9e+02 Score=29.30 Aligned_cols=97 Identities=8% Similarity=-0.105 Sum_probs=53.5
Q ss_pred cEEEEECCCCeEEecccCCCCCCcccceEEEEECCEEEEEecCCCCCCCCCceeeCeEEEEECCCCeEEEeecCCCCCCC
Q 011998 6 DLHILDTSSHTWISPSVRGEGPEAREGHSAALVGKRLFIFGGCGKSSNTNDEVYYNDLYILNTETFVWKRATTSGNPPSA 85 (473)
Q Consensus 6 dv~~yD~~t~~W~~l~~~~~~P~~R~~hsa~~~~~~Iyv~GG~~~~~~~~~~~~~~dv~~yd~~t~~W~~l~~~g~~P~~ 85 (473)
.+.+||+.+.+...+... +. ...+..-+++.+++++.... -...+|++|+.+.+++.+... +
T Consensus 133 ~~~l~d~~~g~~~~l~~~---~~---~~~~~spDG~~la~~~~~~~-------~~~~i~~~d~~~g~~~~l~~~---~-- 194 (582)
T 3o4h_A 133 RVALYALDGGGLRELARL---PG---FGFVSDIRGDLIAGLGFFGG-------GRVSLFTSNLSSGGLRVFDSG---E-- 194 (582)
T ss_dssp CEEEEEEETTEEEEEEEE---SS---CEEEEEEETTEEEEEEEEET-------TEEEEEEEETTTCCCEEECCS---S--
T ss_pred CceEEEccCCcEEEeecC---CC---ceEEECCCCCEEEEEEEcCC-------CCeEEEEEcCCCCCceEeecC---C--
Confidence 345677777776665421 21 22223345555555553210 123599999999988877432 1
Q ss_pred ceeeEEEEE--CCEEEEEeCCCCCCCccceEEEEECCCCCEE
Q 011998 86 RDSHTCSSW--KNKIIVIGGEDGHDYYLSDVHILDTDTLTWK 125 (473)
Q Consensus 86 R~~hs~~~~--~~~IyV~GG~~~~~~~~ndv~~yD~~t~~W~ 125 (473)
.. .....+ +++.++.+..++ ...++++|+.+.+..
T Consensus 195 ~~-~~~~~~SpDG~~l~~~~~~~----~~~i~~~d~~~~~~~ 231 (582)
T 3o4h_A 195 GS-FSSASISPGMKVTAGLETAR----EARLVTVDPRDGSVE 231 (582)
T ss_dssp CE-EEEEEECTTSCEEEEEECSS----CEEEEEECTTTCCEE
T ss_pred Cc-cccceECCCCCEEEEccCCC----eeEEEEEcCCCCcEE
Confidence 11 122223 555444443322 257999999999887
Done!