BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 011999
(473 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9C7N2|CAD1_ARATH MACPF domain-containing protein CAD1 OS=Arabidopsis thaliana
GN=CAD1 PE=2 SV=1
Length = 561
Score = 774 bits (1998), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 378/473 (79%), Positives = 413/473 (87%), Gaps = 8/473 (1%)
Query: 1 MAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKSLAMVGNFISLYKVKLAKLNLV 60
MA FN +SG+ GNIPLG FNAMFN+TG WQ DAA+TKSLA+VG FI LY VKLAKL LV
Sbjct: 97 MAEEFNVRSGVKGNIPLGCFNAMFNYTGSWQVDAASTKSLALVGYFIPLYDVKLAKLTLV 156
Query: 61 LREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYV 120
L EIRRAVP SWDP LASFIENYGTHIVTS+TIGGRDVVYIRQHQSSPL + +IENYV
Sbjct: 157 LHNEIRRAVPSSWDPASLASFIENYGTHIVTSVTIGGRDVVYIRQHQSSPLPVSEIENYV 216
Query: 121 KDIGDERFMDSKSQSSAAPLKYKDKDVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMT 180
D+ RF +++SQS PLKYKDKD+TVIFRRRGGDDLEQSHA+WAETV APD+INMT
Sbjct: 217 NDMIKHRFHEAESQSITGPLKYKDKDITVIFRRRGGDDLEQSHARWAETVPAAPDIINMT 276
Query: 181 FTPIVSLLEGVPGIKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNIQRKEPVC 240
FTPIVSLLEGVPG++HL RAIELYLEYKPPIEDLQYFLDYQI R WAP+ SN+QRKEPVC
Sbjct: 277 FTPIVSLLEGVPGLRHLTRAIELYLEYKPPIEDLQYFLDYQIARAWAPEQSNLQRKEPVC 336
Query: 241 SSLQFSLMGPKLYISPDQVTVGRKPVTGLKLGLEGSKQNRLEINLQHLVSLPKILQPHWD 300
SSLQFSLMGPKL+IS DQVTVGRKPVTGL+L LEGSKQNRL I+LQHLVSLPKILQPHWD
Sbjct: 337 SSLQFSLMGPKLFISADQVTVGRKPVTGLRLSLEGSKQNRLSIHLQHLVSLPKILQPHWD 396
Query: 301 AHVAIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTAPIEYTDTSIGDLSGVHVVTGAQLGV 360
+HV IGAPKWQGPEEQDSRWFEPIKWKNFSHVST+PIE+T+T IGDLSGVH+VTGAQLGV
Sbjct: 397 SHVPIGAPKWQGPEEQDSRWFEPIKWKNFSHVSTSPIEHTETHIGDLSGVHIVTGAQLGV 456
Query: 361 WDFGAKNVLHLKLLFSKVPGCTIRRSVWDHSPSIPSTSQKPGSASSSVSNEKMPEDKRED 420
WDFG+KNVLHLKLLFSKVPGCTIRRSVWDH+P S +PG S+S S E+
Sbjct: 457 WDFGSKNVLHLKLLFSKVPGCTIRRSVWDHTPVASSGRLEPGGPSTSSSTEE-------- 508
Query: 421 SSGHIGKLAKIVDVTEMSKGPQDLPGHWLVTGAKLGVDKGRIVLRVKYSLLNY 473
SG GKLAKIVD +EM KGPQDLPGHWLVTGAKLGV+KG+IVLRVKYSLLNY
Sbjct: 509 VSGQSGKLAKIVDSSEMLKGPQDLPGHWLVTGAKLGVEKGKIVLRVKYSLLNY 561
>sp|Q9STW5|MACP2_ARATH MACPF domain-containing protein At4g24290 OS=Arabidopsis thaliana
GN=At4g24290 PE=2 SV=1
Length = 606
Score = 420 bits (1079), Expect = e-116, Method: Compositional matrix adjust.
Identities = 233/520 (44%), Positives = 320/520 (61%), Gaps = 64/520 (12%)
Query: 1 MAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKSLAMVGNFISLYKVKLAKLNLV 60
MA FN++ ++G IP G FNAMF F+ CWQ DAA TK+LA G FISLY V L K ++
Sbjct: 89 MAEQFNQELSLAGKIPSGLFNAMFEFSSCWQKDAAYTKNLAFDGVFISLYSVALDKSQVL 148
Query: 61 LREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYV 120
LRE +++AVP +WDP LA FI+ YGTHI+ S+ +GG+DV+Y +Q SS L D++ +
Sbjct: 149 LREHVKQAVPSTWDPAALARFIDIYGTHIIVSVKMGGKDVIYAKQQHSSKLQPEDLQKRL 208
Query: 121 KDIGDERFMD---------------SKSQSSAAPLKYKD----------KDVTVIFRRRG 155
K++ D+RF++ SK ++ L++ D +D + +RRG
Sbjct: 209 KEVADKRFVEASVVHNTGSERVQASSKVETKEQRLRFADTSSLGSYANKEDYVFMCKRRG 268
Query: 156 GDDLEQ-SHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLEYKPPIEDL 214
G+D H +W +TVQ+ PDVI+M+F PI SLL GVPG L+ AI LYL YKPPIE+L
Sbjct: 269 GNDNRNLMHNEWLQTVQMEPDVISMSFIPITSLLNGVPGSGFLSHAINLYLRYKPPIEEL 328
Query: 215 QYFLDYQIPRVWAPQHSNI----QRKEPVCSSLQFSLMGPKLYISPDQVTVGRKPVTGLK 270
FL++Q+PR WAP S + QRK+ C+SLQFS GPKLY++ V VG++P+TG++
Sbjct: 329 HQFLEFQLPRQWAPVFSELPLGPQRKQQSCASLQFSFFGPKLYVNTTPVDVGKRPITGMR 388
Query: 271 LGLEGSKQNRLEINLQHLVSLPKILQPHWDAHVAIGAPKWQGPEEQDSRWFEPIKWKNFS 330
L LEG + NRL I+LQHL SLPKI Q D + +I E D R++E + WKN+S
Sbjct: 389 LYLEGRRSNRLAIHLQHLSSLPKIYQLEDDLNRSIRQ------ESHDRRYYEKVNWKNYS 442
Query: 331 HVSTAPIEYTDTSIGDLSGVHVVTGAQLGVWDFGAKNVLHLKLLFSKVPGCT-IRRSVWD 389
HV T P+E D DLS VVTGAQL V G KNVL L+L FS+V G T ++ S WD
Sbjct: 443 HVCTEPVESDD----DLS---VVTGAQLHVESHGFKNVLFLRLCFSRVVGATLVKNSEWD 495
Query: 390 HSPSIPSTSQKPGSASSSVSNE--------KMPEDKREDSSGHIG---------KLAKIV 432
+ + K G S+ +S+ P D +S+ + G KL K V
Sbjct: 496 EAVGF---APKSGLISTLISHHFTAAQKPPPRPADVNINSAIYPGGPPVPTQAPKLLKFV 552
Query: 433 DVTEMSKGPQDLPGHWLVTGAKLGVDKGRIVLRVKYSLLN 472
D +EM++GPQ+ PG+W+V+GA+L V+KG+I L+VKYSL
Sbjct: 553 DTSEMTRGPQESPGYWVVSGARLLVEKGKISLKVKYSLFT 592
>sp|Q9SGN6|NSL1_ARATH MACPF domain-containing protein NSL1 OS=Arabidopsis thaliana
GN=NSL1 PE=1 SV=1
Length = 612
Score = 363 bits (932), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 211/525 (40%), Positives = 294/525 (56%), Gaps = 65/525 (12%)
Query: 1 MAGYFNEKSGISGNIPLGSFNAMFNFTGCWQADAAATKSLAMVGNFISLYKVKLAKLNLV 60
M+ FN+ +SG IP G FN MF F+ CW DA++ K+LA G FISLY V++ + L
Sbjct: 92 MSEKFNQDMCLSGKIPSGMFNNMFAFSKCWPKDASSVKTLAYDGWFISLYSVEIVRKQLT 151
Query: 61 LREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYV 120
LR+E++R VP SWD LA FIE YGTH+V +T+GG+DV++++Q + S +I+ +
Sbjct: 152 LRDEVKREVPSSWDSAALAGFIEKYGTHVVVGVTMGGKDVIHVKQMRKSNHEPEEIQKML 211
Query: 121 KDIGDERF----MDSKSQ-------------------------SSAAPLKYKDKDVTVIF 151
K GDERF ++SKS SSA + K++++ +
Sbjct: 212 KHWGDERFCVDPVESKSPASVYSGKPKEENLLQWGLQPFGTSVSSAVVMHTKNEEIMRVC 271
Query: 152 RRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLEYKPPI 211
RRGG DL QSH +W TV AP+VI+M F PI SLL G+PG L+ A+ LYL YKPPI
Sbjct: 272 IRRGGVDLGQSHERWLSTVSQAPNVISMCFVPITSLLSGLPGTGFLSHAVNLYLRYKPPI 331
Query: 212 EDLQYFLDYQIPRVWAPQHSN----IQRKEPVCSSLQFSLMGPKLYISPDQVTVGRKPVT 267
E+L FL++Q+PR WAP + + ++R + SLQFSLMGPKLY++ +V G +PVT
Sbjct: 332 EELHQFLEFQLPRQWAPVYGDLPLGLRRSKQSSPSLQFSLMGPKLYVNTSKVDSGERPVT 391
Query: 268 GLKLGLEGSKQNRLEINLQHLVSLPKILQ-PHWDAHVAIGAPKWQGPEEQDSRWFEPIKW 326
GL+ LEG K N L I+LQHL + P L H D + I P +G ++ P+KW
Sbjct: 392 GLRFFLEGKKGNHLAIHLQHLSACPPSLHLSHDDTYEPIEEPVEKG-------YYVPVKW 444
Query: 327 KNFSHVSTAPIEYTDTSIGDLSGVHVVTGAQLGVWDFGAKNVLHLKLLFSKVPGCTIRRS 386
FSHV T P++Y D + +VT A L V G + VL L+L FS R+S
Sbjct: 445 GIFSHVCTYPVQYNGARSDDTAS--IVTKAWLEVKGMGMRKVLFLRLGFSLDASAVTRKS 502
Query: 387 VWDHSPSIPSTSQKPG-----SASSSVSNEKMPEDKREDSSGHIG--------------K 427
WD+ + + S+K G S S P + S I K
Sbjct: 503 CWDN---LSTNSRKSGVFSMISTRLSTGLSPNPATTKPQSKIDINSAVYPRGPSPPVKPK 559
Query: 428 LAKIVDVTEMSKGPQDLPGHWLVTGAKLGVDKGRIVLRVKYSLLN 472
L +VD E+ +GP++ PG+W+VTGAKL V+ G+I ++ KYSLL
Sbjct: 560 LLSLVDTKEVMRGPEEQPGYWVVTGAKLCVEAGKISIKAKYSLLT 604
>sp|Q8L612|MACP1_ARATH MACPF domain-containing protein At1g14780 OS=Arabidopsis thaliana
GN=At1g14780 PE=2 SV=1
Length = 627
Score = 352 bits (902), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 212/539 (39%), Positives = 302/539 (56%), Gaps = 75/539 (13%)
Query: 1 MAGYFNEKSGISGNIPLGSFNAMFNF-TGCWQADAAATKSLAMVGNFISLYKVKLAKLN- 58
M+ YFN++S ++G IP G+FNA F F +G W DAA KSL + + ++L+ + + N
Sbjct: 89 MSEYFNQRSSVTGKIPSGNFNATFGFQSGSWATDAANVKSLGLDASVVTLFNLHIHNPNR 148
Query: 59 LVLREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIEN 118
L L + +R AVP SWDP LLA FIE YGTH++T +++GG+DVV +RQ +SS L + +
Sbjct: 149 LRLTDRVRNAVPSSWDPQLLARFIERYGTHVITGVSVGGQDVVVVRQDKSSDLDNDLLRH 208
Query: 119 YVKDIGDERFMDSKSQSSAAPLK-----------------YKDKD--------------V 147
++ D+GD+ F S S+ K + DK +
Sbjct: 209 HLYDLGDQLFTGSCLLSTRRLNKAYHHSHSQPKFPEAFNVFDDKQTVAFNNFSINSQNGI 268
Query: 148 TVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLEY 207
TVI +RGGD +SH++W TV PD IN F PI SLL+ VPG L+ A+ LYL Y
Sbjct: 269 TVICAKRGGDGRAKSHSEWLITVPDKPDAINFNFIPITSLLKDVPGSGLLSHAMSLYLRY 328
Query: 208 KPPIEDLQYFLDYQIPRVWAPQHSNI-----QRKEPVCSSLQFSLMGPKLYISPDQVTVG 262
KPP+ DLQYFLD+ PR WAP H+++ +L + MGPKLY++ VT
Sbjct: 329 KPPLMDLQYFLDFSGPRAWAPVHNDLPFGAAPNMASAYPALHINFMGPKLYVNTTPVTSE 388
Query: 263 RKPVTGLKLGLEGSKQNRLEINLQHLVSLPKIL-QPHWDAHVAIGAPKWQGPEE--QDSR 319
+ PVTG++ LEG K NRL I+LQHL + + + D H+ W+G ++ + R
Sbjct: 389 KNPVTGMRFFLEGKKCNRLAIHLQHLDNTRTTVGEKITDEHI------WRGSDQITDNDR 442
Query: 320 WFEPIKWKNFSHVSTAPIEYTDTSIGDLSG-------VHVVTGAQLGVWDFGAKNVLHLK 372
+FEP+ K FSHV T P++Y I S +VTGAQL V G+K+VLHL+
Sbjct: 443 YFEPLNGKKFSHVCTVPVKYDPNWIKTTSNHKSQNDVAFIVTGAQLEVKKHGSKSVLHLR 502
Query: 373 LLFSKVPGCTIRRSVWDHSPSIPSTSQKPGSASS--------SVSNEKMPEDKRE---DS 421
L ++KV + ++ W H P TSQK G SS SV + + +DK E DS
Sbjct: 503 LRYTKVSDHYVVQNSWVHGPI--GTSQKSGIFSSMSMPLTSGSVHHNMIQKDKNEVVLDS 560
Query: 422 SGHIG--------KLAKIVDVTEMSKGPQDLPGHWLVTGAKLGVDKGRIVLRVKYSLLN 472
G K+ K VD++++ +GPQ PGHWLVTG +L +DKG++ L VK++LL+
Sbjct: 561 GVFPGGPPVPANNKIVKFVDLSQLCRGPQHSPGHWLVTGVRLYLDKGKLCLHVKFALLH 619
>sp|Q811M5|CO6_RAT Complement component C6 OS=Rattus norvegicus GN=C6 PE=2 SV=1
Length = 934
Score = 44.3 bits (103), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 47/234 (20%), Positives = 99/234 (42%), Gaps = 43/234 (18%)
Query: 19 SFNAMFNFTGCWQADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAV---PYSWDP 75
+F F +A S + I + + +L L + +A+ P ++
Sbjct: 292 NFQRNSGFKNAIEASHKKDSSFVRIHKVIKVLNFTMKTTDLQLSDVFLKALIHLPLEYNF 351
Query: 76 PLLASFIENYGTHIVTSITIGGR-DVVY--IRQH-QSSPLSMMDIENYVKDIGDERFM-- 129
L + +++GTH TS ++GG+ D++Y RQ Q+S L+ + N V+ +RF+
Sbjct: 352 ALYSRIFDDFGTHYFTSGSLGGKYDLLYQFSRQELQNSGLTEEETRNCVRYETKKRFLFF 411
Query: 130 -----DSKSQSSAAPLKYK-------DKDVTVIFRRRGGDDLEQS--------------- 162
+ + ++ KYK +K ++++ +GG + +
Sbjct: 412 TKTYKEDRCTTNRLSEKYKGSFLQGSEKSISLV---QGGRSQQAAALAWEKGSSGPEANV 468
Query: 163 HAKWAETVQLAPDVINMTFTPIVSLLEGVPGI----KHLARAIELYLEYKPPIE 212
++W E+V+ P V++ PI+ L+ +P +L +A++ Y P +
Sbjct: 469 FSEWLESVKENPAVVDYELAPIIDLVRNIPCAVTKRNNLRKALQEYAAKFDPCQ 522
>sp|Q29RU4|CO6_BOVIN Complement component C6 OS=Bos taurus GN=C6 PE=2 SV=1
Length = 932
Score = 42.4 bits (98), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 91/222 (40%), Gaps = 43/222 (19%)
Query: 31 QADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGT 87
QA S + I + + +L L + +A+ P ++ L + +++GT
Sbjct: 304 QASQKKASSFIRIHKVIKVLNFTMKTKDLQLSDVFLKALNHLPLEYNSALYSRIFDDFGT 363
Query: 88 HIVTSITIGG-RDVVY---IRQHQSSPLSMMDIENYVKDIGDERFM-------DSKSQSS 136
H TS ++GG D++Y + ++S L+ + +N ++ +RF+ + + ++
Sbjct: 364 HYFTSGSLGGVYDLLYQFSKEELKNSGLTQEEAKNCIRIETKKRFLFVKKTKVEHRCTTN 423
Query: 137 AAPLKYK-------DKDVTVIFRRRGGDDL---------------EQSHAKWAETVQLAP 174
KY+ +K ++++ +GG E+ + W E+V+ P
Sbjct: 424 KLSEKYEGSFMQGSEKSISLV---QGGRSAYAAALAWEKGSPVPEERVFSDWLESVKENP 480
Query: 175 DVINMTFTPIVSLLEGVPGI----KHLARAIELYLEYKPPIE 212
VI+ PI L+ +P +L RA Y P +
Sbjct: 481 SVIDFALAPITDLVRNIPCAVTRRNNLRRAFREYAAKFDPCQ 522
>sp|Q9TUQ3|CO7_PIG Complement component C7 OS=Sus scrofa GN=C7 PE=1 SV=1
Length = 843
Score = 39.3 bits (90), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 45/170 (26%), Positives = 68/170 (40%), Gaps = 35/170 (20%)
Query: 72 SWDPPLL-----ASFIENYGTHIVTSITIGG--RDVVYIRQHQ--SSPLSMMDIENYVKD 122
S+ PPL I+ YGTH + S ++GG + + Y+ + S L D +
Sbjct: 281 SYLPPLYDYSAYRRLIDQYGTHYLQSGSLGGEYKVLFYVDSEKVAESDLGSEDKKKCASS 340
Query: 123 IGDERFMDSKSQSSA--APLKYKDKDVTVIFRR----RGG----------------DDLE 160
F SK + A LK + + R RGG D +
Sbjct: 341 HISFLFKSSKHKCKAMEEALKSASGTQSNVLRGVPFVRGGRPGFVSGLSYLELDNPDGNK 400
Query: 161 QSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYLE 206
Q ++ WA +V P VI TP+ L++ VP +L RA+E YL+
Sbjct: 401 QRYSSWAGSVTDLPQVIKQKLTPLYELVKEVPCASVKRLYLKRALEEYLD 450
>sp|Q29RQ1|CO7_BOVIN Complement component C7 OS=Bos taurus GN=C7 PE=2 SV=1
Length = 843
Score = 38.5 bits (88), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 44/180 (24%), Positives = 68/180 (37%), Gaps = 47/180 (26%)
Query: 69 VPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYI-----------------RQHQSSPL 111
+P +D I+ YGTH + S ++GG V R+ SS
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYKVIFHMDSEKVKKFDFHSEDKRKCASSHF 342
Query: 112 SMMDIENYVKDIGDERFMDSKSQSSA-----------------APLKYKDKDVTVIFRRR 154
+ + K E + S S++ A L Y D + +RR
Sbjct: 343 QFLFTSSKQKCTTMEEVLKSVSENEGNLLRGVPFVRGGHSGFLAGLSYLDLNNPAGNKRR 402
Query: 155 GGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYL-EYKP 209
+++WA +V P+VI TP+ L++ VP +L RAIE YL E+ P
Sbjct: 403 --------YSQWAGSVPDLPEVIKQKLTPLYELVKEVPCASVKKLYLKRAIEEYLDEFDP 454
>sp|Q5RAD0|CO7_PONAB Complement component C7 OS=Pongo abelii GN=C7 PE=2 SV=1
Length = 843
Score = 38.1 bits (87), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 40/172 (23%), Positives = 66/172 (38%), Gaps = 31/172 (18%)
Query: 69 VPYSWDPPLLASFIENYGTHIVTSITIGG--RDVVYIRQHQSSPLSMMDIENYVKDIGDE 126
+P +D I+ YGTH + S ++GG R + Y+ + +E
Sbjct: 283 LPSLYDYSAYRRLIDQYGTHYLQSGSLGGEYRVLFYVDSEKLKQNGFTSVEEKKCKSSGW 342
Query: 127 RFMDSKSQSSAAPLKYKDKDVTVI---------FRRRGGDDL---------------EQS 162
F+ S L+ K + F R GG ++
Sbjct: 343 HFVVKFSSHGCKELENALKAASGTQNNVLRGNPFIRGGGAGFISSLSYLELDNPAGNKRR 402
Query: 163 HAKWAETVQLAPDVINMTFTPIVSLLEGVPGIK----HLARAIELYL-EYKP 209
++ WA++V P VI TP+ L++ VP + +L RA+E YL E+ P
Sbjct: 403 YSAWAKSVTDLPKVIKQKLTPLYELVKEVPCVSVKKLYLKRALEEYLDEFDP 454
>sp|Q8K182|CO8A_MOUSE Complement component C8 alpha chain OS=Mus musculus GN=C8a PE=2
SV=1
Length = 587
Score = 38.1 bits (87), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/54 (35%), Positives = 33/54 (61%), Gaps = 3/54 (5%)
Query: 47 ISLYKVKLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGTHIVTSITIGG 97
I + K+ + N+VL E + +++ P ++ + A FI +YGTH +TS T+GG
Sbjct: 296 IQTAQFKMRRNNIVLDEGMLQSLMELPEQFNYGMYAKFINDYGTHYITSGTMGG 349
>sp|O08852|PKD1_MOUSE Polycystin-1 OS=Mus musculus GN=Pkd1 PE=1 SV=2
Length = 4293
Score = 37.0 bits (84), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 67 RAVPYSWDPPLLASFIENYGTHIVTSITIGGRDVVYIRQHQSSPLSMMDIENYVKDIGDE 126
R V YSW PP + ++GT T GG +V +I + S L ++ + N + D
Sbjct: 1393 RLVAYSW-PPFPYRYTWDFGTEDTTHTQTGGSEVKFIYREPGSYLVIVTVSNNISSTNDS 1451
Query: 127 RFMD 130
F++
Sbjct: 1452 AFVE 1455
>sp|P06683|CO9_MOUSE Complement component C9 OS=Mus musculus GN=C9 PE=1 SV=2
Length = 548
Score = 35.4 bits (80), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 86/209 (41%), Gaps = 50/209 (23%)
Query: 47 ISLYKVKLAKLNLVLREEIR---RAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVY 102
+ L + + ++VLR +A+P S++ F+E YGTH TS ++GG+ ++VY
Sbjct: 299 VQLGRFVMRNRDVVLRSTFLDDVKALPTSYEKGEYFGFLETYGTHYSTSGSLGGQYEIVY 358
Query: 103 IRQHQSSPLSMMDIENYVKDIG---DERF---MDSKSQSSAAPLKYK-----DKDVTVIF 151
+ S +D+ + +G D R D K S A + D TV
Sbjct: 359 VLDKASMKEKGVDLNDVKHCLGFNMDLRIPLQDDLKDASVTASVNADGCIKTDNGKTVNI 418
Query: 152 RR-----------RGGDDLEQS------------------HAKWAETVQLAPDVINMTFT 182
R RGG EQ+ A WA ++ AP +I+ +
Sbjct: 419 TRDNIIDDVISFIRGG-TREQAILLKEKILRGDKTFDKTDFANWASSLANAPALISQRMS 477
Query: 183 PIVSLL-----EGVPGIKHLARAIELYLE 206
PI +L+ + ++L +A+E Y++
Sbjct: 478 PIYNLIPLKIKDAYIKKQNLEKAVEDYID 506
>sp|P98136|CO8A_RABIT Complement component C8 alpha chain OS=Oryctolagus cuniculus GN=C8A
PE=1 SV=1
Length = 585
Score = 34.7 bits (78), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 36/62 (58%), Gaps = 9/62 (14%)
Query: 45 NFISLYK------VKLAKLNLVLREEIRRAV---PYSWDPPLLASFIENYGTHIVTSITI 95
NF+ ++ K+ + ++VL E + +A+ P ++ + + FI +YGTH +TS ++
Sbjct: 288 NFMRIFTKVQTAHFKMRRDDIVLDEGMLQALVELPEQYNYGMYSKFINDYGTHYITSGSM 347
Query: 96 GG 97
GG
Sbjct: 348 GG 349
>sp|P48770|CO9_HORSE Complement component C9 OS=Equus caballus GN=C9 PE=2 SV=1
Length = 547
Score = 33.5 bits (75), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 39/179 (21%), Positives = 80/179 (44%), Gaps = 40/179 (22%)
Query: 67 RAVPYSWDPPLLASFIENYGTHIVTSITIGG-RDVVYIRQHQSSPLSMMDIENYVKDIG- 124
+A+P +++ +F+E YGTH +S ++GG +++Y+ S +++ + + +G
Sbjct: 324 KALPTAYEKGEYIAFLETYGTHYSSSGSLGGLYELIYVLDKASMDQKGVELRDIQRCLGF 383
Query: 125 ------DERFMDSKSQSSAAPLKYKDKDVT----------VIFRRRGGD-----DLEQSH 163
+++ + LK +K++ VI RGG +L++
Sbjct: 384 NLDLSLKDKYEVTAKIDKNDCLKRNEKEIVNIMDGSLIDDVISLIRGGTRKYAFELKEKL 443
Query: 164 AKWAETVQL------------APDVINMTFTPIVSLL-----EGVPGIKHLARAIELYL 205
K A+TV + AP +I+ +PI +L+ + ++L RAIE Y+
Sbjct: 444 LKGAKTVNVTDFVNWASSLNDAPVLISQRLSPIYNLIPVKMKDAHQKKQNLERAIEDYI 502
>sp|P48747|CO9_RABIT Complement component C9 OS=Oryctolagus cuniculus GN=C9 PE=1 SV=1
Length = 557
Score = 33.5 bits (75), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/59 (25%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 67 RAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQHQSSPLSMMDIENYVKDIG 124
+++P +++ +F+E YGTH +S ++GGR +++Y+ S +++ + K +G
Sbjct: 329 KSLPTTYEKGEYFAFLETYGTHYSSSGSLGGRYELIYVLDKASMKEKGIELNDIKKCLG 387
>sp|Q6ZQ93|UBP34_MOUSE Ubiquitin carboxyl-terminal hydrolase 34 OS=Mus musculus GN=Usp34
PE=1 SV=3
Length = 3582
Score = 32.0 bits (71), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 24/59 (40%)
Query: 30 WQADAAATKSLAMVGNFISLYKVKLAKLNLVLREEIRRAVPYSWDPPLLASFIENYGTH 88
W AA L+ +F SL + N EE+RRA P W P +N TH
Sbjct: 472 WNNALAAKAQLSKQSSFASLLNTNMPIGNKKEEEELRRAAPSPWSPAASPQSSDNSDTH 530
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.317 0.135 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 182,727,271
Number of Sequences: 539616
Number of extensions: 7786643
Number of successful extensions: 18229
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 18191
Number of HSP's gapped (non-prelim): 29
length of query: 473
length of database: 191,569,459
effective HSP length: 121
effective length of query: 352
effective length of database: 126,275,923
effective search space: 44449124896
effective search space used: 44449124896
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 63 (28.9 bits)