Query 011999
Match_columns 473
No_of_seqs 224 out of 490
Neff 5.0
Searched_HMMs 46136
Date Fri Mar 29 07:32:39 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011999.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/011999hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 smart00457 MACPF membrane-atta 100.0 1.2E-27 2.7E-32 226.1 17.6 164 40-206 3-194 (194)
2 PF01823 MACPF: MAC/Perforin d 99.9 3.3E-27 7.2E-32 221.3 11.6 173 32-204 15-212 (212)
3 PTZ00482 membrane-attack compl 99.8 2E-20 4.4E-25 208.2 16.1 174 36-213 360-577 (844)
4 PTZ00481 Membrane attack compl 99.8 1.6E-19 3.5E-24 186.7 13.9 147 48-206 189-348 (524)
5 PF02095 Extensin_1: Extensin- 28.4 24 0.00052 19.0 0.4 6 207-212 4-9 (10)
6 PF12651 RHH_3: Ribbon-helix-h 23.3 74 0.0016 23.6 2.3 18 189-206 24-41 (44)
7 smart00703 NRF N-terminal doma 22.6 86 0.0019 27.2 3.0 77 11-89 10-98 (110)
8 PF14116 YyzF: YyzF-like prote 20.3 1.3E+02 0.0028 23.2 3.1 39 193-233 2-43 (48)
9 PF01639 v110: Viral family 11 16.2 67 0.0015 28.9 0.9 28 206-233 24-52 (110)
10 PF03983 SHD1: SLA1 homology d 15.2 1.9E+02 0.0041 24.0 3.2 23 443-465 17-39 (70)
No 1
>smart00457 MACPF membrane-attack complex / perforin.
Probab=99.95 E-value=1.2e-27 Score=226.06 Aligned_cols=164 Identities=27% Similarity=0.414 Sum_probs=127.7
Q ss_pred eEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCChHHHHHHHhccceEEEEeeEEccE-EEEEEec---cccCCCC
Q 011999 40 LAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQ---HQSSPLS 112 (473)
Q Consensus 40 la~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~Y~~FIe~YGTHyIts~tLGGk-dviyv~q---~~sS~lt 112 (473)
++.+++.|.+|++++. +++|+++|++ +||..|++++|.+||++||||||++++|||+ ..+...+ .+.++++
T Consensus 3 ~~~~~v~~~~y~~~~~--~~~l~~~f~~~l~~Lp~~~~~~~~~~fi~~yGTH~i~s~~~Gg~~~~~~~~~~~~~~~~~~~ 80 (194)
T smart00457 3 VARWTVRNRLYSVKLD--DIPLALEFLKALRDLPDQYNRGAYARFIDKYGTHYITSATLGGEYSLLLVLDKKSLERKGLT 80 (194)
T ss_pred EEEEEEEEEEEEecCC--CCCcCHHHHHHHHhCccccCHHHHHHHHHHhCCeEEEeeeeeeeEEEEEEEcHHHHHhcCCC
Confidence 5677888888888776 5889999998 8999999999999999999999999999999 5554443 2567799
Q ss_pred HHHHHHHHhhhcCeeee-eccccccCC---CceecCC--ceEEEEEEEcCCcc------------hhhHHHHHHhhccCC
Q 011999 113 MMDIENYVKDIGDERFM-DSKSQSSAA---PLKYKDK--DVTVIFRRRGGDDL------------EQSHAKWAETVQLAP 174 (473)
Q Consensus 113 ~~evk~cL~~~as~~F~-~~~~~s~~~---~~~~~~~--~i~~i~~vrGG~~~------------~~~ys~Wl~SVk~nP 174 (473)
.++++.|++. +...|. ..+....+. ..+.... ..+.++.++||+.. ...|++|++||+.+|
T Consensus 81 ~~~i~~cl~~-~~~~~~~~~s~~~c~~~~~~~~~~~~~~~~~~~~~v~GG~~~~~~~l~~~~~~~~~~~~~W~~sv~~~p 159 (194)
T smart00457 81 SEDISTCLGG-SSNSFAGSVSAEHCLQFSSYSKYLSTSLRRLSHTQVLGGHVTVLCDLLRGPSTNSLDFSDWAESVPNEP 159 (194)
T ss_pred HHHHHhhhce-eeeEEEEeecCceecccccccccccccccceeeEEEeCCchHHHHHHhcCCCCChHHHHHHHHHhhhCC
Confidence 9999999986 333332 112111111 1111111 23667788999632 368999999999999
Q ss_pred ceEEeeccchhhhcCCCc---hHHHHHHHHHHHHH
Q 011999 175 DVINMTFTPIVSLLEGVP---GIKHLARAIELYLE 206 (473)
Q Consensus 175 dVIs~kL~PI~eLV~~vp---~k~nLkrAIeeYL~ 206 (473)
++|+++|.||++||++.| .+++|++||++||.
T Consensus 160 ~~I~~~l~Pi~~lv~~~~~~~~~~~l~~Al~~Yl~ 194 (194)
T smart00457 160 VLIDVSLAPIYELLPPNPLSQKREALRQALRSYLK 194 (194)
T ss_pred ceeEEeeEEHHHHhcCcchHHHHHHHHHHHHHHhC
Confidence 999999999999999986 89999999999984
No 2
>PF01823 MACPF: MAC/Perforin domain; InterPro: IPR020864 The membrane attack complex/perforin (MACPF) domain is conserved in bacteria, fungi, mammals and plants. It was originally identified and named as being common to five complement components (C6, C7, C8-alpha, C8-beta, and C9) and perforin. These molecules perform critical functions in innate and adaptive immunity. The MAC family proteins and perforin are known to participate in lytic pore formation. In response to pathogen infection, a sequential and highly specific interaction between the constituent elements occurs to form transmembrane channels which are known as the membrane-attack complex (MAC).Only a few other MACPF proteins have been characterised and several are thought to form pores for invasion or protection [, , ]. Examples are proteins from malarial parasites [], the cytolytic toxins from sea anemones [], and proteins that provide plant immunity [, ]. Functionally uncharacterised MACPF proteins are also evident in pathogenic bacteria such as Chlamydia spp [] and Photorhabdus luminescens (Xenorhabdus luminescens) []. The MACPF domain is commonly found to be associated with other N- and C-terminal domains, such as TSP1 (see PDOC50092 from PROSITEDOC), LDLRA (see PDOC00929 from PROSITEDOC), EGF-like (see PDOC00021 from PROSITEDOC),Sushi/CCP/SCR (see PDOC50923 from PROSITEDOC), FIMAC or C2 (see PDOC00380 from PROSITEDOC). They probably control or target MACPF function [, ]. The MACPF domain oligomerizes, undergoes conformational change, and is required for lytic activity. The MACPF domain consists of a central kinked four-stranded antiparallel beta sheet surrounded by alpha helices and beta strands, forming two structural segments. Overall, the MACPF domain has a thin L-shaped appearance. MACPF domains exhibit limited sequence similarity but contain a signature [YW]-G-[TS]-H-[FY]-x(6)-G-G motif [, , ]. Some proteins known to contain a MACPF domain are listed below: Vertebrate complement proteins C6 to C9. Complement factors C6 to C9 assemble to form a scaffold, the membrane attack complex (MAC), that permits C9 polymerisation into pores that lyse Gram-negative pathogens [, ]. Vertebrate perforin. It is delivered by natural killer cells and cytotoxic T lymphocytes and forms oligomeric pores (12 to 18 monomers) in the plasma membrane of either virus-infected or transformed cells. Arabidopsis thaliana (Mouse-ear cress) constitutively activated cell death 1 (CAD1) protein. It is likely to act as a mediator that recognises plant signals for pathogen infection []. Arabidopsis thaliana (Mouse-ear cress) necrotic spotted lesions 1 (NSL1) protein []. Venomous sea anemone Phyllodiscus semoni (Night anemone) toxins PsTX-60A and PsTX-60B []. Venomous sea anemone Actineria villosa (Okinawan sea anemone) toxin AvTX-60A []. Plasmodium sporozoite microneme protein essential for cell traversal 2 (SPECT2). It is essential for the membrane-wounding activity of the sporozoite and is involved in its traversal of the sinusoidal cell layer prior to hepatocyte-infection []. P. luminescens Plu-MACPF. Although nonlytic, it was shown to bind to cell membranes []. Chlamydial putative uncharacterised protein CT153 []. ; PDB: 2QP2_A 3OJY_B 3NSJ_A 4E0S_B 3T5O_A 4A5W_B 2QQH_A 2RD7_A.
Probab=99.94 E-value=3.3e-27 Score=221.33 Aligned_cols=173 Identities=25% Similarity=0.413 Sum_probs=132.0
Q ss_pred hchhcccceEEEeEEEEEEEEEEec-CCCCCcHHHHh---hCCCCCChHH---HHHHHhccceEEEEeeEEccE-EEEEE
Q 011999 32 ADAAATKSLAMVGNFISLYKVKLAK-LNLVLREEIRR---AVPYSWDPPL---LASFIENYGTHIVTSITIGGR-DVVYI 103 (473)
Q Consensus 32 kdaa~tKsla~dg~~I~ly~f~L~~-~~L~Ls~eF~~---~LPs~Yd~~~---Y~~FIe~YGTHyIts~tLGGk-dviyv 103 (473)
.....+..+......|.+|++.|.. .++.|+++|++ +||..|++.. |.+||++|||||+++++|||+ .+++.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~F~~~l~~L~~~~~~~~~~~y~~f~~~yGTH~v~~~~lGG~~~~~~~ 94 (212)
T PF01823_consen 15 SSSSSSNKFIISKSNCSRYQFSLNDSDDLPLTPEFLSDLNALPAEYNSDNTDEYYRFFDKYGTHYVTSVTLGGKLIYIYS 94 (212)
T ss_dssp CCCSTTEEEEEEEEEEEEEEEEE-HSSSBHBGHHHHHHHHTSHSS--HHHHHHHHHHHHHH-SEEEEEEEEEEEEEEEEE
T ss_pred HhhcccEEEEEEEEEEEEEEEEEecCCCCCcCHHHHHHHHhhCcccCccchHHHHHHHHHhCcEEEEEEEEcceeEEEEE
Confidence 3445556689999999999999954 57889999976 8999999988 999999999999999999999 66554
Q ss_pred ec---cccCCCCHHHHHHHHhhhcCeeeeeccc--cccCC-----CceecCCceEEEEEEEcCCc------chhhHHHHH
Q 011999 104 RQ---HQSSPLSMMDIENYVKDIGDERFMDSKS--QSSAA-----PLKYKDKDVTVIFRRRGGDD------LEQSHAKWA 167 (473)
Q Consensus 104 ~q---~~sS~lt~~evk~cL~~~as~~F~~~~~--~s~~~-----~~~~~~~~i~~i~~vrGG~~------~~~~ys~Wl 167 (473)
.+ .........+++.|++..+...|..... ..... ...+..........++||++ ....+.+|+
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GG~~~~~~~~~~~~~~~W~ 174 (212)
T PF01823_consen 95 VSKSSLESSKESSIEMKICVSASASASFAGVSVSGSASNSSSQSQSSSFSQSNSSSSIIVIGGDPSSAAASDNDNFSEWA 174 (212)
T ss_dssp EEHHHHHHTTSSHHHHHHHHHHHHHHHTHCHCCCHHTCTTTHHHHCCHHHCHEEEEEEEEESS-CTTHHCCCHHHHHHHH
T ss_pred eeehhhccccccchhhhheeeeeeeeeecccccccccccCccccccccccccceeEEEEEECCccccccccCcccHHHHH
Confidence 43 2455667788889999887655521111 11110 12223334577789999997 377999999
Q ss_pred HhhccCCceEEeeccchhhhcCCCc-hHHHHHHHHHHH
Q 011999 168 ETVQLAPDVINMTFTPIVSLLEGVP-GIKHLARAIELY 204 (473)
Q Consensus 168 ~SVk~nPdVIs~kL~PI~eLV~~vp-~k~nLkrAIeeY 204 (473)
+||+++|.+|+++|.||++|++..+ .+.+|++||++|
T Consensus 175 ~sv~~~p~~i~~~l~PI~~li~~~~~k~~~l~~ai~~Y 212 (212)
T PF01823_consen 175 SSVKDNPVPIDFELQPIYDLIPDNPFKKENLKKAIEEY 212 (212)
T ss_dssp HHHCTS-EEEEEEEEEGGGGGCTTTTHHHHHHHHHHHH
T ss_pred HHHhCCCeeEEEEeEEHHHHcCCcHHHHHHHHHHHHhC
Confidence 9999999999999999999999988 899999999998
No 3
>PTZ00482 membrane-attack complex/perforin (MACPF) Superfamily; Provisional
Probab=99.84 E-value=2e-20 Score=208.23 Aligned_cols=174 Identities=21% Similarity=0.307 Sum_probs=124.6
Q ss_pred cccceEEEeEEEEEEEEEEecC-CCCCcHHHHh---hCCCCCC------------------------hHHHHHHHhccce
Q 011999 36 ATKSLAMVGNFISLYKVKLAKL-NLVLREEIRR---AVPYSWD------------------------PPLLASFIENYGT 87 (473)
Q Consensus 36 ~tKsla~dg~~I~ly~f~L~~~-~L~Ls~eF~~---~LPs~Yd------------------------~~~Y~~FIe~YGT 87 (473)
..|.|..+ .+|..|.+.|... ...|+++|++ .||..|+ ...|.+||++|||
T Consensus 360 ~~k~fi~k-s~C~~Y~~~L~~~~~~~Lt~~F~~aL~~LP~~f~~~~~~~~Cs~~~Y~~n~~~e~C~~i~~W~~f~~~yGT 438 (844)
T PTZ00482 360 TTKTYLLK-SNCVKYTAGLPPYFKWNQTTAFKNAVNGLPPVFDGLEAESECSSDVYEQDKTAEECENVPIWISFFEQYGT 438 (844)
T ss_pred ceeEEEEe-eeEEEEEEeccccCCCccCHHHHHHHHhcchhhhcccccccCCHHHhhhcccccccccHHHHHHHHHHcCc
Confidence 33345545 4999999999884 4469999999 6899887 3569999999999
Q ss_pred EEEEeeEEccEEEEEEeccccCCCCH-HHHHHHHhhhcCeee----eeccccccC--C---CceecCCceEEEEEEEcCC
Q 011999 88 HIVTSITIGGRDVVYIRQHQSSPLSM-MDIENYVKDIGDERF----MDSKSQSSA--A---PLKYKDKDVTVIFRRRGGD 157 (473)
Q Consensus 88 HyIts~tLGGkdviyv~q~~sS~lt~-~evk~cL~~~as~~F----~~~~~~s~~--~---~~~~~~~~i~~i~~vrGG~ 157 (473)
||+++++|||+-. ...+ .++.+. +..+.|+..++.+.+ ..+++..+. . ...+.....+..+.++||+
T Consensus 439 H~~~~~~lGG~I~-~~~~--le~s~~e~lkk~~lsVkA~~k~~~g~~S~ggs~~~ss~~eskss~~~~~~sk~t~ViGG~ 515 (844)
T PTZ00482 439 HIIMELQLGGKIT-KQVT--VKNSSVEQMKKDGVSVKAQVKAQFGFASAGGSTNVSSDNSSASNEYSYNMSEQLLVIGGN 515 (844)
T ss_pred eEEEEEEeccEEE-EEEE--ecchhHHHHHhcCcceeeeehhccccceecccccccchhhhhhhhhhhccceEEEEECCC
Confidence 9999999999922 2112 223333 346777776665432 111121111 1 1112222344557799998
Q ss_pred cc-----hhhHHHHHHhhccCCceEEeeccchhhhcCCCchHHHHHHHHHHHHH-cCCCchh
Q 011999 158 DL-----EQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPGIKHLARAIELYLE-YKPPIED 213 (473)
Q Consensus 158 ~~-----~~~ys~Wl~SVk~nPdVIs~kL~PI~eLV~~vp~k~nLkrAIeeYL~-yKp~iee 213 (473)
.. +..|.+|++||+.+|++|+++|.|||+||+..+.+++|++||+.|++ |.-..++
T Consensus 516 ~~~d~~d~~~~~~W~~SV~~nP~pI~~~l~PI~~Ll~~~~~ke~y~kAI~~Yi~l~G~~p~~ 577 (844)
T PTZ00482 516 PIKDVTKEENLAEWSKTVSTLPMPINIELLPISTLFPSDDLKESYEKAVIYYSRLYGLSPHD 577 (844)
T ss_pred CCCCCCChHHHHHHHHHhhcCCcceEEEeEEHHHhcCChhhHHHHHHHHHHHHHHhCCChhH
Confidence 73 67899999999999999999999999999987789999999999999 5444444
No 4
>PTZ00481 Membrane attack complex/ Perforin (MACPF) Superfamily; Provisional
Probab=99.81 E-value=1.6e-19 Score=186.70 Aligned_cols=147 Identities=20% Similarity=0.314 Sum_probs=119.7
Q ss_pred EEEEEEEecCCCCCcHHHHh---hCCCCCChHHHHHHHhccceEEEEeeEEccE--EEEEEec--cc----cCCCCHHHH
Q 011999 48 SLYKVKLAKLNLVLREEIRR---AVPYSWDPPLLASFIENYGTHIVTSITIGGR--DVVYIRQ--HQ----SSPLSMMDI 116 (473)
Q Consensus 48 ~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~Y~~FIe~YGTHyIts~tLGGk--dviyv~q--~~----sS~lt~~ev 116 (473)
.+.+.+|+.++|+|+++|++ +||.+||+++|++||++|||||+++++|||. .++.+|+ .. .+++++++|
T Consensus 189 nv~r~~mRsdnLmLh~eFqraL~~LP~eYd~g~Y~~FIe~YGTHYITsv~LGG~VE~vTs~RtC~~slps~~~GlS~~qV 268 (524)
T PTZ00481 189 NVIRMTFKTDNLKLNRFAQRAIDALPEDYQPDVYNEFLNAWGTHISVDTFIGGMIEKQTVFKDCVFFTPQFNGGLSPEQV 268 (524)
T ss_pred eeEEEEEecCCceeCHHHHHHHHhcchhcCHHHHHHHHHhcCceEEEEeeEcCEEEEEeehhhhhhhchhhhcCCCHHHH
Confidence 34677889999999999998 8999999999999999999999999999999 5778887 23 389999999
Q ss_pred HHHHhhhcCeeeeeccccccCCCceecCC-ceEEEEEEEcCCcchhhHHHHHHhhccCCceEEeeccchhhhcCCCch-H
Q 011999 117 ENYVKDIGDERFMDSKSQSSAAPLKYKDK-DVTVIFRRRGGDDLEQSHAKWAETVQLAPDVINMTFTPIVSLLEGVPG-I 194 (473)
Q Consensus 117 k~cL~~~as~~F~~~~~~s~~~~~~~~~~-~i~~i~~vrGG~~~~~~ys~Wl~SVk~nPdVIs~kL~PI~eLV~~vp~-k 194 (473)
+.||..++.-.. .+.|-.. ....+-.+.||+++ ...+|.+|+..||++|++.-.||++-++..|. |
T Consensus 269 k~cLn~ELqgn~----------~~Gy~~~rrkvslD~i~GGNPE--~i~nr~~Tfs~NPvplK~n~ipiW~afpagpqvk 336 (524)
T PTZ00481 269 EQALRNELNGNP----------AEGFFTARRQVTLDHKFGGNPE--DVANWEQTISQNPALLKINRFLSWDNLTANPQVK 336 (524)
T ss_pred HHHHHHHhcCCC----------CccceeeeeeeehhhhcCCChh--HhhhhhhhhccCceeeeeeeeeehhhcccCcHHH
Confidence 999999875211 1222110 01111136899855 58999999999999999999999999999887 9
Q ss_pred HHHHHHHHHHHH
Q 011999 195 KHLARAIELYLE 206 (473)
Q Consensus 195 ~nLkrAIeeYL~ 206 (473)
+||++||..-++
T Consensus 337 ~NlqqaI~nrie 348 (524)
T PTZ00481 337 ANLQQAIMNRIE 348 (524)
T ss_pred HHHHHHHHHHHH
Confidence 999999987554
No 5
>PF02095 Extensin_1: Extensin-like protein repeat; InterPro: IPR003883 Extensins are plant cell-wall proteins; they can account for up to 20% of the dry weight of the cell wall. They are highly-glycosylated, possibly reflecting their interactions with cell-wall carbohydrates. Amongst their functions is cell wall strengthening in response to mechanical stress (e.g., during attack by pests, plant-bending in the wind, etc.). This repeat occurs within extensin-like proteins.; GO: 0005199 structural constituent of cell wall
Probab=28.44 E-value=24 Score=19.00 Aligned_cols=6 Identities=83% Similarity=1.824 Sum_probs=5.0
Q ss_pred cCCCch
Q 011999 207 YKPPIE 212 (473)
Q Consensus 207 yKp~ie 212 (473)
||||+|
T Consensus 4 ykPpve 9 (10)
T PF02095_consen 4 YKPPVE 9 (10)
T ss_pred cCCCcc
Confidence 789887
No 6
>PF12651 RHH_3: Ribbon-helix-helix domain
Probab=23.26 E-value=74 Score=23.63 Aligned_cols=18 Identities=50% Similarity=0.733 Sum_probs=16.0
Q ss_pred CCCchHHHHHHHHHHHHH
Q 011999 189 EGVPGIKHLARAIELYLE 206 (473)
Q Consensus 189 ~~vp~k~nLkrAIeeYL~ 206 (473)
+++|...-++.||++||+
T Consensus 24 t~i~~S~Ll~eAle~~l~ 41 (44)
T PF12651_consen 24 TGIPKSKLLREALEDYLE 41 (44)
T ss_pred HCCCHHHHHHHHHHHHHH
Confidence 458889999999999998
No 7
>smart00703 NRF N-terminal domain in C. elegans NRF-6 (Nose Resistant to Fluoxetine-4) and NDG-4 (resistant to nordihydroguaiaretic acid-4). Also present in several other worm and fly proteins.
Probab=22.57 E-value=86 Score=27.23 Aligned_cols=77 Identities=16% Similarity=0.203 Sum_probs=44.5
Q ss_pred cccCccceeeeeEEEeccchhhchhcccc---eEEEeEEEEEEEEEEecCCCCCcH------HHHh---hCCCCCChHHH
Q 011999 11 ISGNIPLGSFNAMFNFTGCWQADAAATKS---LAMVGNFISLYKVKLAKLNLVLRE------EIRR---AVPYSWDPPLL 78 (473)
Q Consensus 11 ~~gkipsG~fn~~f~~sGs~~kdaa~tKs---la~dg~~I~ly~f~L~~~~L~Ls~------eF~~---~LPs~Yd~~~Y 78 (473)
-.||+|+|.+.+.+..-|++..-.+-... -.++|.||.+. +.+... +.... ...+ =+|++=+..+.
T Consensus 10 a~Gk~psGll~Gn~~~lG~ydeC~~i~~~~~~~~~~g~YC~~~-~~~~~~-~~~~~~~~~~~~~~~~gvC~P~sCs~~dv 87 (110)
T smart00703 10 AWGKFPSGLLEGNNLWLGSYEECLRISGPGTSTKYQGKYCYLP-LVPGKN-LNCSIKSLTSVLVLRTGVCLPSSCSAADL 87 (110)
T ss_pred ccCCCCCeEEEeecCcccCHHHHhhhhccCcCcccceeeeeEE-eccccc-hhhhhhccccccceEEEEEeCCCCCHHHH
Confidence 36999999999888777887765532222 25677777543 222211 10000 0111 37877777777
Q ss_pred HHHHhccceEE
Q 011999 79 ASFIENYGTHI 89 (473)
Q Consensus 79 ~~FIe~YGTHy 89 (473)
.++++.+..++
T Consensus 88 ~~l~~~~~~~~ 98 (110)
T smart00703 88 KTLLNQLSKDL 98 (110)
T ss_pred HHHHHHHHHhc
Confidence 77777666553
No 8
>PF14116 YyzF: YyzF-like protein
Probab=20.28 E-value=1.3e+02 Score=23.18 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHc---CCCchhhhhhhhccCCccccccCCCC
Q 011999 193 GIKHLARAIELYLEY---KPPIEDLQYFLDYQIPRVWAPQHSNI 233 (473)
Q Consensus 193 ~k~nLkrAIeeYL~y---Kp~ieel~~flEfq~p~~CaPC~n~~ 233 (473)
|++|+..||+.|+.. -|.|++|..== ..+.+|.=|.+..
T Consensus 2 C~EHie~AiD~~Vde~e~aP~i~~l~~~~--~~~~~C~~C~~~A 43 (48)
T PF14116_consen 2 CEEHIELAIDDFVDEYEQAPDIEKLEEVE--KLPTTCEYCDQPA 43 (48)
T ss_pred cHHHHHHHHHHHHHhhccCCCeEeccccC--CCCCcchhhCCCc
Confidence 578999999999983 56676665211 3677887776543
No 9
>PF01639 v110: Viral family 110; InterPro: IPR004848 This entry represents a family of viral proteins of unknown function known as the 110 family []. They contain a central cysteine rich region with eight conserved cysteines. Some proteins in this entry contain two copies of the cysteine rich region eg P18560 from SWISSPROT.
Probab=16.16 E-value=67 Score=28.87 Aligned_cols=28 Identities=25% Similarity=0.370 Sum_probs=21.5
Q ss_pred HcCCCchhhhhhhhccCCcc-ccccCCCC
Q 011999 206 EYKPPIEDLQYFLDYQIPRV-WAPQHSNI 233 (473)
Q Consensus 206 ~yKp~ieel~~flEfq~p~~-CaPC~n~~ 233 (473)
.+.||.|||.|+--+.-.|+ |=-|+||.
T Consensus 24 T~~PP~~EL~YWCTY~~~CdFCWdCq~Gi 52 (110)
T PF01639_consen 24 TRNPPEEELEYWCTYAKHCDFCWDCQDGI 52 (110)
T ss_pred cCCCChHHhceeccccccCcchhhCcCch
Confidence 57999999999999854443 22689887
No 10
>PF03983 SHD1: SLA1 homology domain 1, SHD1 ; InterPro: IPR007131 The SLA1 homology domain is found in the cytoskeleton assembly control protein SLA1, which is responsible for the correct formation of the actin cytoskeleton.; GO: 0008092 cytoskeletal protein binding, 0030674 protein binding, bridging, 0042802 identical protein binding, 0043130 ubiquitin binding; PDB: 2HBP_A.
Probab=15.21 E-value=1.9e+02 Score=23.98 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=19.0
Q ss_pred CCCcceEEeceeeeeeCceEEEE
Q 011999 443 DLPGHWLVTGAKLGVDKGRIVLR 465 (473)
Q Consensus 443 d~pg~w~vtgakl~~~~gki~l~ 465 (473)
|.-|-+-|-+.-|.+.+|||.|+
T Consensus 17 D~tG~f~VeA~fv~~~dgkV~L~ 39 (70)
T PF03983_consen 17 DRTGKFKVEAEFVGVNDGKVHLH 39 (70)
T ss_dssp BSSS--EEEEEEEEEETTEEEEE
T ss_pred eCCCCEEEEEEEEEeeCCEEEEE
Confidence 55689999999999999999997
Done!