Query 011999
Match_columns 473
No_of_seqs 224 out of 490
Neff 5.0
Searched_HMMs 29240
Date Mon Mar 25 19:36:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/011999.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/011999hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3ojy_B Complement component C8 100.0 6.3E-39 2.1E-43 343.5 19.7 233 9-255 200-483 (537)
2 3ojy_A Complement component C8 100.0 2.2E-38 7.4E-43 340.5 19.5 203 40-255 259-501 (554)
3 3nsj_A Perforin-1; pore formin 100.0 1.7E-37 5.7E-42 332.7 16.2 219 20-252 120-387 (540)
4 3t5o_A Complement component C6 100.0 1.3E-37 4.3E-42 350.8 15.8 231 12-256 257-535 (913)
5 2rd7_A Complement component C8 100.0 3.7E-33 1.3E-37 285.9 16.1 167 40-206 164-367 (367)
6 2qp2_A Unknown protein; toxin, 100.0 2.5E-32 8.6E-37 291.0 8.9 229 4-256 118-388 (511)
7 3kk7_A Putative cell invasion 98.9 2.8E-09 9.5E-14 112.5 8.5 162 40-206 159-368 (541)
8 2i46_A Adrenocortical dysplasi 32.5 31 0.0011 30.9 3.3 39 424-466 24-66 (161)
9 2ygo_A WIF-1, WNT inhibitory f 31.6 13 0.00046 34.8 0.9 31 225-256 150-182 (188)
10 3u7d_B Protein HEG homolog 1; 27.9 18 0.00061 23.2 0.7 17 331-347 3-19 (26)
11 1edm_B Factor IX; epidermal gr 23.9 25 0.00085 23.5 0.9 31 223-253 5-38 (39)
No 1
>3ojy_B Complement component C8 beta chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=6.3e-39 Score=343.53 Aligned_cols=233 Identities=16% Similarity=0.208 Sum_probs=177.9
Q ss_pred cccccCccceeeeeEEEeccchhhchhc--------ccceEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCChHH
Q 011999 9 SGISGNIPLGSFNAMFNFTGCWQADAAA--------TKSLAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDPPL 77 (473)
Q Consensus 9 ~~~~gkipsG~fn~~f~~sGs~~kdaa~--------tKsla~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~ 77 (473)
.++..+|| |.|++.|+++.+.....++ ..+|......|++|+|+|+..+++|+++|++ +||..||+++
T Consensus 200 ~~~gl~i~-~~~~~~~~~s~s~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~l~~~~~~L~~~F~~~l~~LP~~y~~~~ 278 (537)
T 3ojy_B 200 FSFGFKIP-GIFELGISSQSDRGKHYIRRTKRFSHTKSVFLHARSDLEVAHYKLKPRSLMLHYEFLQRVKRLPLEYSYGE 278 (537)
T ss_dssp CBTTTBCC-SCEECCCTTTSSSSHHHHHHHHTTCSCCEEEEEEEECEEEEEEEECSSSCCBCHHHHHHHTTCCSSCCHHH
T ss_pred ceeeeecc-cceeEeEeecccchHHHHHHHHHhhccceEEEEEEEEEEEEEEEEeCCCCCCCHHHHHHHHhcccccCHHH
Confidence 44555676 4566667774443222211 2227777889999999999889999999999 6899999999
Q ss_pred HHHHHhccceEEEEeeEEccE-EEEEEec---cccCCCCHHHHHHHHhhhcCeeee----ecccccc----CC-------
Q 011999 78 LASFIENYGTHIVTSITIGGR-DVVYIRQ---HQSSPLSMMDIENYVKDIGDERFM----DSKSQSS----AA------- 138 (473)
Q Consensus 78 Y~~FIe~YGTHyIts~tLGGk-dviyv~q---~~sS~lt~~evk~cL~~~as~~F~----~~~~~s~----~~------- 138 (473)
|++||++||||||++++|||+ +++++.. .+++++|.+|+++||+.+++++|. .++.+.. .+
T Consensus 279 y~~fi~~yGTH~i~s~~lGG~~~~i~~~~~~~~~~s~~t~~evk~Cl~~~~~~~~~i~~~~~~~~~~~~~C~~~~~~~~~ 358 (537)
T 3ojy_B 279 YRDLFRDFGTHYITEAVLGGIYEYTLVMNKEAMERGDYTLNNVHACAKNDFKIGGAIEEVYVSLGVSVGKCRGILNEIKD 358 (537)
T ss_dssp HHHHHHHHCSEEEEEEEEEECCEEEEEEEHHHHTTTTCCHHHHHHHTTTC----------------CCSCCTTTTTHHHH
T ss_pred HHHHHHhcCcEEEEeEeeccEEEEEEEEehHhHhhcCCCHHHHHHHHhcccceeEEeeeeeeeccccccccccccccccc
Confidence 999999999999999999999 8877544 579999999999999998885552 2221111 11
Q ss_pred CceecCCceEEEEEEEcCCcc------------hhhHHHHHHhhccCCceEEeeccchhhhc--CCCch----HHHHHHH
Q 011999 139 PLKYKDKDVTVIFRRRGGDDL------------EQSHAKWAETVQLAPDVINMTFTPIVSLL--EGVPG----IKHLARA 200 (473)
Q Consensus 139 ~~~~~~~~i~~i~~vrGG~~~------------~~~ys~Wl~SVk~nPdVIs~kL~PI~eLV--~~vp~----k~nLkrA 200 (473)
...++....++++.|+||+.. ++.|++|++||+++|+||+|+|.|||+|| +++|+ |+||++|
T Consensus 359 ~~~~~~~~~~~~~~V~GG~~~~~~~L~~~~~~~~~~~~~W~~Sv~~~P~vI~~~l~PI~eLv~~~~ip~~~~kr~nL~~A 438 (537)
T 3ojy_B 359 RNKRDTMVEDLVVLVRGGASEHITTLAYQELPTADLMQEWGDAVQYNPAIIKVKVEPLYELVTATDFAYSSTVRQNMKQA 438 (537)
T ss_dssp TTTSSCSEEEEEEECCSCCSTTCCCCCTSSSCCCSCHHHHHHHHHTSCEEEEEEEEEGGGGCCTTTCTTHHHHHHHHHHH
T ss_pred cccccccceeEEEEEeCCCcccchhhhcccCCCHHHHHHHHHHhhcCCceEEEEeEeHHHhcCcccCCchHHHHHHHHHH
Confidence 112333456999999999963 47899999999999999999999999999 45776 6999999
Q ss_pred HHHHHHcCCCchhhhhhhhccCCccccccCCCC--eecCCCcc-ccccccccceeEEc
Q 011999 201 IELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI--QRKEPVCS-SLQFSLMGPKLYIS 255 (473)
Q Consensus 201 IeeYL~yKp~ieel~~flEfq~p~~CaPC~n~~--~~~~~~~~-sl~fs~~Gpkl~v~ 255 (473)
|++||. || .+|+|+||+|++ ...+..|. .|+..+.|..|...
T Consensus 439 i~~Yl~------------e~-~~c~C~pC~~~~~~~~~gt~C~c~C~~g~~G~~c~~~ 483 (537)
T 3ojy_B 439 LEEFQK------------EV-SSCHCAPCQGNGVPVLKGSRCDCICPVGSQGLACEVS 483 (537)
T ss_dssp HHHHHH------------HT-CGGGSCCCSTTCEEEEETTEEEEECCTTEETGGGCEE
T ss_pred HHHHHH------------Hh-CcccCCCCCcCCEEecCCCceeccCCCCcccccccCC
Confidence 999999 88 799999999998 44555665 67777889877764
No 2
>3ojy_A Complement component C8 alpha chain; macpf, lipocalin, immune system; HET: TPO BMA; 2.51A {Homo sapiens}
Probab=100.00 E-value=2.2e-38 Score=340.51 Aligned_cols=203 Identities=20% Similarity=0.331 Sum_probs=166.9
Q ss_pred eEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCChHHHHHHHhccceEEEEeeEEccE-EEEEEec---cccCCCC
Q 011999 40 LAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQ---HQSSPLS 112 (473)
Q Consensus 40 la~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~Y~~FIe~YGTHyIts~tLGGk-dviyv~q---~~sS~lt 112 (473)
|......|++|+|+|++++++|+++|++ +||..||+++|++||++||||||++++|||+ +++++.+ .+++++|
T Consensus 259 F~~~~~~~~~~~f~l~~~~l~L~~~F~~~l~~LP~~y~~~~y~~fi~~yGTHyi~s~~lGG~~~~i~~l~~~~~~~sglt 338 (554)
T 3ojy_A 259 FTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGIT 338 (554)
T ss_dssp EEEEEEEEEEEEEEECSSSBCBCHHHHHHHHTCCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHTTCC
T ss_pred EEEEEEEEEEEEEEEeCCCCCCCHHHHHHHHhCCccCCHHHHHHHHHhcCcEEEEeeeeCcEEEEEEEEehhhhhhcCCC
Confidence 7778889999999999999999999999 6899999999999999999999999999999 8887644 4789999
Q ss_pred HHHHHHHHhhhcCeee---eecccccc-----C--C----CceecCCceEEEEEEEcCCcc----------hhhHHHHHH
Q 011999 113 MMDIENYVKDIGDERF---MDSKSQSS-----A--A----PLKYKDKDVTVIFRRRGGDDL----------EQSHAKWAE 168 (473)
Q Consensus 113 ~~evk~cL~~~as~~F---~~~~~~s~-----~--~----~~~~~~~~i~~i~~vrGG~~~----------~~~ys~Wl~ 168 (473)
.+|+++||+.+++++| ..++++.. + + ..+++....++++.|+||+.. ++.|++|++
T Consensus 339 ~~dvk~Cl~~e~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~~~V~GG~~~~~~~L~~~~~~~~~~~W~~ 418 (554)
T 3ojy_A 339 SRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITYRSWGR 418 (554)
T ss_dssp HHHHHHHHHHTTTCCC-------------CCTTTTTTCSHHHHHHTTEEEEEECCBSCC----------CCCCCHHHHHH
T ss_pred HHHHHHHHhhcccEEEeeeeeeecccccccccccccccccccccccccceEEEEEECCCccccchhhcccCHHHHHHHHH
Confidence 9999999999998877 23322211 1 0 112334456999999999963 568999999
Q ss_pred hhccCCceEEeeccchhhhcC--CCch----HHHHHHHHHHHHHcCCCchhhhhhhhccCCccccccCCCC--eecCCCc
Q 011999 169 TVQLAPDVINMTFTPIVSLLE--GVPG----IKHLARAIELYLEYKPPIEDLQYFLDYQIPRVWAPQHSNI--QRKEPVC 240 (473)
Q Consensus 169 SVk~nPdVIs~kL~PI~eLV~--~vp~----k~nLkrAIeeYL~yKp~ieel~~flEfq~p~~CaPC~n~~--~~~~~~~ 240 (473)
||+++|+||+|+|.|||+||+ ++|+ |+||++||++||. |+ .+|+|+||+|++ -.....|
T Consensus 419 Sv~~~P~vI~~~l~PI~~Lv~~~~~p~~~~kr~nL~~Ai~~Yl~------------e~-~~c~c~pC~~~g~~~~~gt~C 485 (554)
T 3ojy_A 419 SLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM------------EF-NACRCGPCFNNGVPILEGTSC 485 (554)
T ss_dssp HGGGSCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHH------------HT-CGGGSCCCTTTCCEEEETTEE
T ss_pred HHhcCCceEEEEeEeHHHhcCcccCCccHHHHHHHHHHHHHHHh------------hc-ccccccccCCCCEEcCCCCcc
Confidence 999999999999999999998 5665 7999999999999 88 799999999999 3455566
Q ss_pred c-ccccccccceeEEc
Q 011999 241 S-SLQFSLMGPKLYIS 255 (473)
Q Consensus 241 ~-sl~fs~~Gpkl~v~ 255 (473)
. .|+..+.|..|...
T Consensus 486 ~c~C~~G~~G~~C~~~ 501 (554)
T 3ojy_A 486 RCQCRLGSLGAACEQT 501 (554)
T ss_dssp EECCCSSCCSSSCC--
T ss_pred cccCCCCCCCCCcccC
Confidence 5 78888888877664
No 3
>3nsj_A Perforin-1; pore forming protein, immune system; HET: NAG; 2.75A {Mus musculus}
Probab=100.00 E-value=1.7e-37 Score=332.74 Aligned_cols=219 Identities=19% Similarity=0.292 Sum_probs=173.0
Q ss_pred eeeEEEeccchhhch--hccc------ceEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCCh---HHHHHHHhcc
Q 011999 20 FNAMFNFTGCWQADA--AATK------SLAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDP---PLLASFIENY 85 (473)
Q Consensus 20 fn~~f~~sGs~~kda--a~tK------sla~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~---~~Y~~FIe~Y 85 (473)
+++.++++|++++.+ +++| +|..+...|++|+|+|.+ +++|+++|++ +||..||+ ++|++||++|
T Consensus 120 ~~~~~~~~~s~s~~~~~a~~~s~~~~~~F~~~~~~~~~~~~~~~~-~~~L~~~F~~~l~~LP~~~~~~~~~~Y~~fi~~y 198 (540)
T 3nsj_A 120 ANMRASVAGSHSKVANFAAEKTYQDQYNFNSDTVECRMYSFRLVQ-KPPLHLDFKKALRALPRNFNSSTEHAYHELISSY 198 (540)
T ss_dssp TTTTCBCTTTTSHHHHHHHHHHHHSCEEEEEEEEEEEEEEEEECS-SCCBCHHHHHHHHTSCSSCCSSTHHHHHHHHHHH
T ss_pred cceeEEeecccchhhHHHHHhhhccceEEEEEEEEEEEEEEEeCC-CCCCCHHHHHHHHhcccccCcccHHHHHHHHHhc
Confidence 355677888887665 3333 377788999999999985 7899999999 69999999 9999999999
Q ss_pred ceEEEEeeEEccE-EEEE-Eec--cccCCCCHHHHHHHHhhhcCeeee-ecccccc-----------CCCceecCCceEE
Q 011999 86 GTHIVTSITIGGR-DVVY-IRQ--HQSSPLSMMDIENYVKDIGDERFM-DSKSQSS-----------AAPLKYKDKDVTV 149 (473)
Q Consensus 86 GTHyIts~tLGGk-dviy-v~q--~~sS~lt~~evk~cL~~~as~~F~-~~~~~s~-----------~~~~~~~~~~i~~ 149 (473)
|||||++++|||+ ++++ +++ .+++++|.+|+++||+.++++++. .++.+.. +...++.....++
T Consensus 199 GTHyi~s~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~Cl~~e~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~ 278 (540)
T 3nsj_A 199 GTHFITAVDLGGRISVLTALRTCQLTLNGLTADEVGDCLNVEAQVSIGAQASVSSEYKACEEKKKQHKMATSFHQTYRER 278 (540)
T ss_dssp CSEEEEEEEEEEEEEEEEEEEHHHHHHTTCCHHHHHHHHHHHHHHHHTSSCSCSHHHHHHHHHHHHTTCSSCHHHHCCCE
T ss_pred CcEEEEeeeccceEEEEEEEehHhHhhcCCCHHHHHHHHhhcccEEEEEeEeecccccccccccccccccCCcccccceE
Confidence 9999999999999 6664 554 478999999999999987766552 1221110 0012223334588
Q ss_pred EEEEEcCCcc------------hhhHHHHHHhhccCCceEEeeccchhhhcCC-CchHHHHHHHHHHHHHcCCCchhhhh
Q 011999 150 IFRRRGGDDL------------EQSHAKWAETVQLAPDVINMTFTPIVSLLEG-VPGIKHLARAIELYLEYKPPIEDLQY 216 (473)
Q Consensus 150 i~~vrGG~~~------------~~~ys~Wl~SVk~nPdVIs~kL~PI~eLV~~-vp~k~nLkrAIeeYL~yKp~ieel~~ 216 (473)
++.|+||+.. ++.|++|++||+++|++|+|+|.|||+||+. .+.|+|||+||++||.
T Consensus 279 ~~~V~GG~~~~~~~L~~~~~~~p~~~~~W~~Sv~~~P~~I~~~l~PI~~Lv~~~~~kr~nLk~Ai~~Yl~---------- 348 (540)
T 3nsj_A 279 HVEVLGGPLDSTHDLLFGNQATPEQFSTWTASLPSNPGLVDYSLEPLHTLLEEQNPKREALRQAISHYIM---------- 348 (540)
T ss_dssp EEEEESSCGGGCCCSSSCSSCCHHHHHHHHHHTTTSCEEEEEEEEEGGGGSCTTCTHHHHHHHHHHHHHH----------
T ss_pred EEEEeCCCccchhhhhcccCCCHHHHHHHHHHHhhCCceEEEEEEEHHHhcCCcHHHHHHHHHHHHHHHH----------
Confidence 9999999962 5689999999999999999999999999995 6779999999999999
Q ss_pred hhhccCCc-ccc-ccCCCC-eecCCCcc-ccccc--ccccee
Q 011999 217 FLDYQIPR-VWA-PQHSNI-QRKEPVCS-SLQFS--LMGPKL 252 (473)
Q Consensus 217 flEfq~p~-~Ca-PC~n~~-~~~~~~~~-sl~fs--~~Gpkl 252 (473)
|| ++| +|+ ||+||+ ...+..|. .|+-+ .-|.-|
T Consensus 349 --e~-~~c~~C~~PC~nn~~~l~g~~C~C~C~~~~~t~~~~C 387 (540)
T 3nsj_A 349 --SR-ARWQNCSRPCRSGQHKSSHDSCQCECQDSKVTNQDCC 387 (540)
T ss_dssp --HT-CBCCCTTSCCBTTEEECSSCTTCEEESCTTTBCGGGC
T ss_pred --hc-CchhhhcccccCCCccCCCCceEeeCCCCCCcccccc
Confidence 88 798 997 999999 44555565 66665 444333
No 4
>3t5o_A Complement component C6; macpf, MAC, membrane attack complex, innate IMMU system, blood, membrane, cytolysin, immune SYST; HET: NAG FUL FUC BGC MAN; 2.87A {Homo sapiens} PDB: 4a5w_B* 4e0s_B*
Probab=100.00 E-value=1.3e-37 Score=350.82 Aligned_cols=231 Identities=21% Similarity=0.310 Sum_probs=187.7
Q ss_pred ccCccceeeeeEEEeccchhhchh------c--ccceEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCChHHHHH
Q 011999 12 SGNIPLGSFNAMFNFTGCWQADAA------A--TKSLAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDPPLLAS 80 (473)
Q Consensus 12 ~gkipsG~fn~~f~~sGs~~kdaa------~--tKsla~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~Y~~ 80 (473)
+.+|| +.|++.++++++.++.+. . ...|......|++|+|+|+.++++|+++|++ +||..||+++|++
T Consensus 257 ~~~i~-~~~s~~~~~~~s~s~~~~~~~~~s~~~~~~f~~~~~~~~~~~~~l~~~~l~L~~~F~~~l~~LP~~y~~~~Y~~ 335 (913)
T 3t5o_A 257 SFSVP-IFYSSKRSENINHNSAFKQAIQASHKKDSSFIRIHKVMKVLNFTTKAKDLHLSDVFLKALNHLPLEYNSALYSR 335 (913)
T ss_dssp ---CC-CCCCTTTCCCCCCTTHHHHHHHHHHTSSEEEEEEEEEEEEEEEEECSSSCCBCHHHHHHTTSSCSSCCHHHHHH
T ss_pred eeccc-cceeeeeEeeccchHHHHHHHHhhhccceEEEEEEEEEEEEEEEecCCCCCcCHHHHHHHHhCccccCHHHHHH
Confidence 34466 457777788887765552 2 2337778889999999999999999999999 6799999999999
Q ss_pred HHhccceEEEEeeEEccE-EEEEEec---cccCCCCHHHHHHHHhhhcCeeeeecccccc-------CCCceecCC----
Q 011999 81 FIENYGTHIVTSITIGGR-DVVYIRQ---HQSSPLSMMDIENYVKDIGDERFMDSKSQSS-------AAPLKYKDK---- 145 (473)
Q Consensus 81 FIe~YGTHyIts~tLGGk-dviyv~q---~~sS~lt~~evk~cL~~~as~~F~~~~~~s~-------~~~~~~~~~---- 145 (473)
||++||||||++++|||+ +++++.+ .++++++.+|+++||+.+++++|.+++.+.. ....+.+.+
T Consensus 336 fi~~yGTHyits~~lGG~~~~i~~~~~~~~~~~~~t~~ev~~cl~~~~~~~~~~~~~~~~~~~c~~~~~~~~~~~s~~~~ 415 (913)
T 3t5o_A 336 IFDDFGTHYFTSGSLGGVYDLLYQFSSEELKNSGLTEEEAKHCVRIETKKRVLFAKKTKVEHRCTTNKLSEKHEGSFIQG 415 (913)
T ss_dssp HHHHHCSEECSEEEEEEEEEEEEEEEHHHHHHHTCCHHHHHHHHHHHHHHHTSCCCCCCCCGGGTSSTTGGGGTTCSGGG
T ss_pred HHHhcCcEEEEeEEeccEEEEEEEEchhhHhhcCCCHHHHHHhhheecceEEEEEeeccccCcccCCCcccccccccccc
Confidence 999999999999999999 8887654 4788999999999999988877755433211 111112222
Q ss_pred ceEEEEEEEcCCcc---------------hhhHHHHHHhhccCCceEEeeccchhhhcCCCc----hHHHHHHHHHHHHH
Q 011999 146 DVTVIFRRRGGDDL---------------EQSHAKWAETVQLAPDVINMTFTPIVSLLEGVP----GIKHLARAIELYLE 206 (473)
Q Consensus 146 ~i~~i~~vrGG~~~---------------~~~ys~Wl~SVk~nPdVIs~kL~PI~eLV~~vp----~k~nLkrAIeeYL~ 206 (473)
..++++.|+||++. .+.|++|++||+++|+||+|+|.|||+||++++ .|+||++||++||.
T Consensus 416 ~~~~~~~v~GG~~~~~~~L~~~~~~~~~~~~~~~~W~~Sv~~~P~~I~~~l~PI~eLv~~~~~~~~kr~~Lk~Ai~~Yl~ 495 (913)
T 3t5o_A 416 AEKSISLIRGGRSEYGAALAWEKGSSGLEEKTFSEWLESVKENPAVIDFELAPIVDLVRNIPCAVTKRNNLRKALQEYAA 495 (913)
T ss_dssp SSEEEECCBSSCHHHHHHHSCCTTSSSSSHHHHHHHHHHHHHSCEEEEEECCBGGGGCCSSTTHHHHHHHHHHHHHHHHH
T ss_pred cccceEEEeCCCcchhhhhhhhccCCCCCHHHHHHHHHHHhhCCceeeeeeccHHHHhhccCchHHHHHHHHHHHHhhcc
Confidence 24899999999962 368999999999999999999999999999975 47999999999999
Q ss_pred cCCCchhhhhhhhccCCccccccCCCC--eecCCCcc-ccccccccceeEEcc
Q 011999 207 YKPPIEDLQYFLDYQIPRVWAPQHSNI--QRKEPVCS-SLQFSLMGPKLYISP 256 (473)
Q Consensus 207 yKp~ieel~~flEfq~p~~CaPC~n~~--~~~~~~~~-sl~fs~~Gpkl~v~~ 256 (473)
|| ++|+|+||+||+ ...+..|. .|+..+.|+.|.+..
T Consensus 496 ------------e~-~~c~C~PC~ngg~~~l~g~~C~C~C~~g~~G~~Ce~~~ 535 (913)
T 3t5o_A 496 ------------KF-DPCQCAPCPNNGRPTLSGTECLCVCQSGTYGENCEKQS 535 (913)
T ss_dssp ------------TT-CGGGSCCBTTTBEEEEETTEEEEECCTTBCSTTSCCBC
T ss_pred ------------cc-ccccCCCCCCCCEeecCCCceEEEccCCccccCccCcc
Confidence 88 799999999999 55677777 788899999998864
No 5
>2rd7_A Complement component C8 alpha chain; membrane attack system, cleavage on PAIR of basic residues, complement alternate pathway, complement pathway; 2.15A {Homo sapiens} PDB: 2qqh_A
Probab=100.00 E-value=3.7e-33 Score=285.87 Aligned_cols=167 Identities=22% Similarity=0.353 Sum_probs=138.0
Q ss_pred eEEEeEEEEEEEEEEecCCCCCcHHHHh---hCCCCCChHHHHHHHhccceEEEEeeEEccE-EEEEEec---cccCCCC
Q 011999 40 LAMVGNFISLYKVKLAKLNLVLREEIRR---AVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQ---HQSSPLS 112 (473)
Q Consensus 40 la~dg~~I~ly~f~L~~~~L~Ls~eF~~---~LPs~Yd~~~Y~~FIe~YGTHyIts~tLGGk-dviyv~q---~~sS~lt 112 (473)
|......|++|+|+|.+.+++|+++|++ +||..||+++|++||++||||||++++|||+ +++++.+ .++++++
T Consensus 164 f~~~~~~~~~~~~~l~~~~~~L~~~F~~~l~~LP~~y~~~~y~~fI~~yGTHyits~~lGG~~~~i~~~~~~~~~~s~~t 243 (367)
T 2rd7_A 164 FTRIFTKVQTAHFKMRKDDIMLDEGMLQSLMELPDQYNYGMYAKFINDYGTHYITSGSMGGIYEYILVIDKAKMESLGIT 243 (367)
T ss_dssp EEEEEEEEEEEEEEECSSSBCBCHHHHHHHHTSCSSCCHHHHHHHHHHHCSEEEEEEEEEEEEEEEEEEEHHHHHHHTCC
T ss_pred EEEEEEEEEEEEEEEECCCCCCCHHHHHHHHhCcccCCHHHHHHHHHHcCcEEEeccccCcEEEEEEEEehHhHhhCCCC
Confidence 7777889999999999888999999999 6799999999999999999999999999999 8888654 4789999
Q ss_pred HHHHHHHHhhhcCeeee-e--ccccccCC-----C------ceecCCceEEEEEEEcCCcc----------hhhHHHHHH
Q 011999 113 MMDIENYVKDIGDERFM-D--SKSQSSAA-----P------LKYKDKDVTVIFRRRGGDDL----------EQSHAKWAE 168 (473)
Q Consensus 113 ~~evk~cL~~~as~~F~-~--~~~~s~~~-----~------~~~~~~~i~~i~~vrGG~~~----------~~~ys~Wl~ 168 (473)
.+|+++|++.+++++|. . ++.+.+.. . ..+.....+.++.|+||++. ++.|++|++
T Consensus 244 ~~e~~~cl~~~a~~~~~~~v~~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~v~GG~~~~~~~L~~~~~~~~~~~W~~ 323 (367)
T 2rd7_A 244 SRDITTCFGGSLGIQYEDKINVGGGLSGDHCKKFGGGKTERARKAMAVEDIISRVRGGSSGWSGGLAQNRSTITYRSWGR 323 (367)
T ss_dssp HHHHHHHHHHHTTCCC------------CHHHHHTTCCSHHHHHHTTEEEEEECCBSCCC-----------CCCHHHHHH
T ss_pred HHHHHHHHHhhcCeeeeccceeecccCccccccccccccccccccccccceEEEEECCCccccchhccCCChHHHHHHHH
Confidence 99999999999887772 1 11111100 0 11222234688999999853 268999999
Q ss_pred hhccCCceEEeeccchhhhcC--CCch----HHHHHHHHHHHHH
Q 011999 169 TVQLAPDVINMTFTPIVSLLE--GVPG----IKHLARAIELYLE 206 (473)
Q Consensus 169 SVk~nPdVIs~kL~PI~eLV~--~vp~----k~nLkrAIeeYL~ 206 (473)
||+++|++|+|+|.||++||+ ++|+ |+||+|||++||.
T Consensus 324 Sv~~~P~~I~~~l~PI~~Ll~~~~~p~~~~kk~~Lk~Ai~~Yl~ 367 (367)
T 2rd7_A 324 SLKYNPVVIDFEMQPIHEVLRHTSLGPLEAKRQNLRRALDQYLM 367 (367)
T ss_dssp HHHHCCEEEEEEEEEGGGGGGGBTTCCCHHHHHHHHHHHHHHHC
T ss_pred HhhcCCceEEEEEEEHHHhcCcccCCccHHHHHHHHHHHHHHhC
Confidence 999999999999999999999 7999 9999999999984
No 6
>2qp2_A Unknown protein; toxin, unknown function; 2.00A {Photorhabdus luminescens subsp}
Probab=99.97 E-value=2.5e-32 Score=290.99 Aligned_cols=229 Identities=15% Similarity=0.185 Sum_probs=169.6
Q ss_pred cccccccccc--CccceeeeeEEEeccchhhchhccc--ceEEEeEEEEEEEEEEecCC--CCCcHHHHhhCCCCCChHH
Q 011999 4 YFNEKSGISG--NIPLGSFNAMFNFTGCWQADAAATK--SLAMVGNFISLYKVKLAKLN--LVLREEIRRAVPYSWDPPL 77 (473)
Q Consensus 4 ~fn~~~~~~g--kipsG~fn~~f~~sGs~~kdaa~tK--sla~dg~~I~ly~f~L~~~~--L~Ls~eF~~~LPs~Yd~~~ 77 (473)
.+|++++++| ++++|.|++.|+.+ ++.+| +|...+.+|++|++++..+. +.|+++|+++|+..+++.+
T Consensus 118 ~l~~~~svsgs~~~fsgs~~a~F~~s------~~~~k~~~f~~v~~~i~~y~~~~~~~~l~~~Ls~~F~k~L~~~~~~~~ 191 (511)
T 2qp2_A 118 NISSKSRIKGNYLFFSASLKVDFDTD------SLTDFENAFSRIQYTYDLYILKSSAEALKEFLKESVKTALDKADTEED 191 (511)
T ss_dssp HHHHTTCCSSSCCTTTTHHHHHSCTG------GGGCTTEEEEEEEEEEEEEEEECCHHHHGGGBCHHHHHHHHHCCSHHH
T ss_pred HHHHhheeeeceeeeeEEEEEEeccc------cccccceEEEEEEEEEEEEEEEeChhhhhhhcCHHHHHhhccccchhh
Confidence 4788899998 69999999888653 22333 35666889999999998764 3799999999987789999
Q ss_pred HHHHHhccceEEEEeeEEccE-EEEEEecc-ccCCCCHHHHHHHHhhhcCeeeeeccccccCC----CceecCCceEEEE
Q 011999 78 LASFIENYGTHIVTSITIGGR-DVVYIRQH-QSSPLSMMDIENYVKDIGDERFMDSKSQSSAA----PLKYKDKDVTVIF 151 (473)
Q Consensus 78 Y~~FIe~YGTHyIts~tLGGk-dviyv~q~-~sS~lt~~evk~cL~~~as~~F~~~~~~s~~~----~~~~~~~~i~~i~ 151 (473)
|++||++||||||++++|||+ +++++.+. ..++ ..++..|++......+ ..+...+.. ..+++ ...++++
T Consensus 192 y~~fI~~YGTHyits~~lGG~~~y~~s~~~~~~~~--~~~is~~a~as~~~~~-~~s~~~~~~~~~~~~sf~-s~~~~~~ 267 (511)
T 2qp2_A 192 MNDLFNTWGSHFLSGVVMGGCAQYSSSTNKYTSNL--TNSFDVVAAASFAGFI-GLSARTGNSFMEDIKKFR-SASNIKT 267 (511)
T ss_dssp HHHHHHHTCSEEECEEEEEEEEEEEEEEETTTSCC--SSCHHHHHHHHHHHHT-TCCCCCTTTHHHHHHHHH-HTEEEEE
T ss_pred HHHHHHhCCeEEEEeeecccEEEEEEeeccccccc--cceeeeEEEEEEeeee-eecccccccccccccccc-ccCceEE
Confidence 999999999999999999999 66655543 2222 2344555443221101 111111111 11222 1257788
Q ss_pred EEEcCC-----cc-----------------hhhHHHHHHhhccCCceEEee----ccchhhhcCCCchHHHHHHHHHHHH
Q 011999 152 RRRGGD-----DL-----------------EQSHAKWAETVQLAPDVINMT----FTPIVSLLEGVPGIKHLARAIELYL 205 (473)
Q Consensus 152 ~vrGG~-----~~-----------------~~~ys~Wl~SVk~nPdVIs~k----L~PI~eLV~~vp~k~nLkrAIeeYL 205 (473)
.++||+ .. +..|++|++||+++|++|+|+ |.|||+||+..+.|++||+||++||
T Consensus 268 ~V~GG~~s~~d~~~~aL~~~~ps~~~~~~~~~~y~~W~~SV~~nP~vIdf~~~~sL~PI~eLV~~~~Kk~~LkrAieeYl 347 (511)
T 2qp2_A 268 HAIGGDLSRFDPFGGATSADQPSAEEIAAAKKAFEDWKASVPNAPELVNFADSNPLTGIWELCSDRTQKAKLKKHFETVW 347 (511)
T ss_dssp EEESSCTTTCCTTTTCCCCSSCCHHHHHHHHHHHHHHHHHSTTSCEEEEECSSCCEEEGGGGCSCHHHHHHHHHHHHHTH
T ss_pred EEECCCCcccccccceeccCCCcccccccchhHHHHHHHHhhhchheEeecCCccceeHHHhccCHHHHHHHHHHHHHHH
Confidence 999998 21 147999999999999999996 9999999999888999999999999
Q ss_pred HcCCCchhhhhhhhccCCccccccCCCCe---ecCCCcc-ccccccccceeEEcc
Q 011999 206 EYKPPIEDLQYFLDYQIPRVWAPQHSNIQ---RKEPVCS-SLQFSLMGPKLYISP 256 (473)
Q Consensus 206 ~yKp~ieel~~flEfq~p~~CaPC~n~~~---~~~~~~~-sl~fs~~Gpkl~v~~ 256 (473)
. |+ .|+|+||+||-. +.+..|- .|+..|.|+++-+..
T Consensus 348 ~------------e~--~~~~~~~~~n~~~~~~~g~~c~c~cp~g~~g~~~~~~~ 388 (511)
T 2qp2_A 348 A------------PA--ESAKRRVHADYIDEIIIGINNTNTPPEGYIGLKSTKDE 388 (511)
T ss_dssp H------------HH--HHHTTCCCCCEEEEEEEEECTTCCCCTTCEECBSSSBC
T ss_pred h------------hc--CcccccccCcceeEEecCCccCccCCCCcccccccccc
Confidence 9 74 677999999862 4666676 799999998876543
No 7
>3kk7_A Putative cell invasion protein with MAC/perforin; STR genomics, joint center for structural genomics, JCSG; 2.46A {Bacteroides thetaiotaomicron vpi-5482}
Probab=98.88 E-value=2.8e-09 Score=112.52 Aligned_cols=162 Identities=12% Similarity=0.141 Sum_probs=106.8
Q ss_pred eEEEeEEEEEEEEEEecCC--C------CCcHHHHhhCCCCCChHHHHHHHhccceEEEEeeEEccE-EEEEEeccccCC
Q 011999 40 LAMVGNFISLYKVKLAKLN--L------VLREEIRRAVPYSWDPPLLASFIENYGTHIVTSITIGGR-DVVYIRQHQSSP 110 (473)
Q Consensus 40 la~dg~~I~ly~f~L~~~~--L------~Ls~eF~~~LPs~Yd~~~Y~~FIe~YGTHyIts~tLGGk-dviyv~q~~sS~ 110 (473)
++.-...+...+++|..+. | -|++.|+++|=. +.+ .+||+.||||+++...+||+ .++|.--. .+.
T Consensus 159 ygel~v~~~~rr~~L~~s~~~L~~i~s~YLt~~Fi~dL~n-~s~---~eIVq~YGTHVLTDI~~GGr~~alY~g~~-~~~ 233 (541)
T 3kk7_A 159 HGELSIEVVNGMLNLQTAPSALRKIAADYLDELFVDALYN-SSM---VELMQSYGEFVLTGYYTGGRASALFYGVD-TNS 233 (541)
T ss_dssp EEEEEEEEEEEEEEECCCHHHHHHHHHHCBCHHHHHHHHH-SCH---HHHHHHHCSEEECEEEEEEEEEEEEEEEE-SSC
T ss_pred EEEEEEeeeccEEEecCChhHHHHHHHhhchHHHHHHHhh-CCH---HHHHHhhCCeEEEEEEeccEEEEEEEEee-ccc
Confidence 6667778899999998853 2 378999996543 233 79999999999999999999 77776432 222
Q ss_pred CCHHHHHHHHh--hhcCeeeeec------------cccc--cCC-----CceecCCceEEEEEEEcCCcc----------
Q 011999 111 LSMMDIENYVK--DIGDERFMDS------------KSQS--SAA-----PLKYKDKDVTVIFRRRGGDDL---------- 159 (473)
Q Consensus 111 lt~~evk~cL~--~~as~~F~~~------------~~~s--~~~-----~~~~~~~~i~~i~~vrGG~~~---------- 159 (473)
.+.++-++-+. ..|+..+... ++.. +.+ +...+........+..||+..
T Consensus 234 ~~~~~Kek~md~~I~As~~~~~~~~~~~~~~i~~~S~n~s~~~~~g~~~Sl~kkn~~~~~~ikT~GG~~g~~i~~~~~~~ 313 (541)
T 3kk7_A 234 IQFDSKEKDMDVAINASYEWKNKKPTAPSDTIHSASGNLSIGTKRENSETITNKFSALSYSIKTLGGAYGYSISTPPYDI 313 (541)
T ss_dssp CSHHHHHHHHHHHHHHSEEEESCCCC----------CEEEESCCHHHHHHHHTTEEEEEEEEEEESSSSSCSSCCCCEET
T ss_pred cchHHhhhhhhheeeeeeeecccccccccccceeeeeecccCcccccccccccccceEEEEEEeeCCCccccccccCCCC
Confidence 23333222222 2223322211 1100 000 011112234666788999641
Q ss_pred ---hhhHHHHHHhhcc--CCceEEe---eccchhhhcCCCchHHHHHHHHHHHHH
Q 011999 160 ---EQSHAKWAETVQL--APDVINM---TFTPIVSLLEGVPGIKHLARAIELYLE 206 (473)
Q Consensus 160 ---~~~ys~Wl~SVk~--nPdVIs~---kL~PI~eLV~~vp~k~nLkrAIeeYL~ 206 (473)
.-++..|.+||.+ +..+|++ .|.||+|||.+...|+.|+.|+++||.
T Consensus 314 ~~~sIDls~W~~Sl~Ds~n~~LIDI~~~gLyPIyDfI~e~n~Kqri~~t~~~~l~ 368 (541)
T 3kk7_A 314 TNYSIDLTPWLQSLNDPKTHTMIDLQDGGLYPISDFILEENFKQRYNDTHMDFQY 368 (541)
T ss_dssp TTCCEECHHHHHHTTSGGGCEEEEECTTCEEEGGGGCCCHHHHHHHHHHHTTSCC
T ss_pred CCcceehHHhhhhhcccccceEEEcCCCCeeehHHhhhchhHHHHHHHHHhhccc
Confidence 2478999999998 6889998 799999999997777777777777775
No 8
>2i46_A Adrenocortical dysplasia protein homolog; TPP1, OB fold, POT1 binding, protein binding; 2.70A {Homo sapiens}
Probab=32.51 E-value=31 Score=30.95 Aligned_cols=39 Identities=31% Similarity=0.497 Sum_probs=33.3
Q ss_pred cccccccccccccc-ccCCC---CCCcceEEeceeeeeeCceEEEEE
Q 011999 424 HIGKLAKIVDVTEM-SKGPQ---DLPGHWLVTGAKLGVDKGRIVLRV 466 (473)
Q Consensus 424 ~~~kl~k~vd~~e~-~~gp~---d~pg~w~vtgakl~~~~gki~l~v 466 (473)
++..|++||-++|. .-||- |+|| .||-|.|.+|+-++|-
T Consensus 24 ~~gQllevlq~ae~~~~gps~apdt~~----v~A~llvSDgthsvrc 66 (161)
T 2i46_A 24 RAGQLLEVLQDAEAAVAGPSHAPDTSD----VGATLLVSDGTHSVRC 66 (161)
T ss_dssp EEEEEEEEEECCCCCCCSCCSSCCCTT----SCEEEEEECSSCEEEE
T ss_pred chHHHHHHHHHhccccCCCCCCCCCCC----ceeEEEEcCCceEEEE
Confidence 56789999999998 47887 8888 6999999999988773
No 9
>2ygo_A WIF-1, WNT inhibitory factor 1; signaling protein, WNT signaling pathway, WNT antagonist, MO cancer, glycosaminoglycan; HET: MLY PCF NAG; 1.85A {Homo sapiens} PDB: 2ygp_A*
Probab=31.59 E-value=13 Score=34.75 Aligned_cols=31 Identities=10% Similarity=0.068 Sum_probs=22.1
Q ss_pred ccc-ccCCCC-eecCCCccccccccccceeEEcc
Q 011999 225 VWA-PQHSNI-QRKEPVCSSLQFSLMGPKLYISP 256 (473)
Q Consensus 225 ~Ca-PC~n~~-~~~~~~~~sl~fs~~Gpkl~v~~ 256 (473)
.|. ||.|+| =...+.| .|+-.|+|+.|.+++
T Consensus 150 ~C~~~C~ngG~Cv~P~~C-~C~~Gw~G~~C~~~~ 182 (188)
T 2ygo_A 150 ECPGGCRNGGFCNERRIC-ECPDGFHGPHCEGTK 182 (188)
T ss_dssp CCTTCCCTTCEECTTSCE-ECCTTCBTTTTCBC-
T ss_pred ccCCCCCCCCEeCCCCcc-cCcCCCCCCCCcCCc
Confidence 465 699998 1223344 788999999999874
No 10
>3u7d_B Protein HEG homolog 1; FERM domain, RAP1 effector, membrane protein cytoplasmic TAI protein binding; 2.49A {Homo sapiens}
Probab=27.89 E-value=18 Score=23.17 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=15.1
Q ss_pred eeeecccccCCCccCCC
Q 011999 331 HVSTAPIEYTDTSIGDL 347 (473)
Q Consensus 331 ~v~tapv~~~~~~~~~~ 347 (473)
|-|.-|-+|||.++.|.
T Consensus 3 hsciypgqynpsfisdd 19 (26)
T 3u7d_B 3 HSCIFPGQYNPSFISDE 19 (26)
T ss_pred ccccccCccCcccccCc
Confidence 88999999999998763
No 11
>1edm_B Factor IX; epidermal growth factor, EGF, calcium- binding, EGF-like domain, structure and function, coagulation factor; 1.50A {Homo sapiens} SCOP: g.3.11.1 PDB: 1ixa_A
Probab=23.87 E-value=25 Score=23.48 Aligned_cols=31 Identities=10% Similarity=-0.062 Sum_probs=19.0
Q ss_pred CccccccCCCC--eecCCCcc-ccccccccceeE
Q 011999 223 PRVWAPQHSNI--QRKEPVCS-SLQFSLMGPKLY 253 (473)
Q Consensus 223 p~~CaPC~n~~--~~~~~~~~-sl~fs~~Gpkl~ 253 (473)
+|.-.||+|++ ........ .|+-.|.|..|+
T Consensus 5 ~C~~~pC~ngg~C~~~~~~~~C~C~~G~~G~~Ce 38 (39)
T 1edm_B 5 QCESNPCLNGGSCKDDINSYECWCPFGFEGKNCE 38 (39)
T ss_dssp TTTTCCCCTTCEEEEETTEEEEECCTTCCSTTSC
T ss_pred cCCCCCCCCCCEeEcCCCceEeECCCCCcCCccC
Confidence 45445999998 43333323 566778887654
Done!