BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012000
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3VFD|A Chain A, Human Spastin Aaa Domain
Length = 389
Score = 305 bits (780), Expect = 5e-83, Method: Compositional matrix adjust.
Identities = 162/292 (55%), Positives = 210/292 (71%), Gaps = 15/292 (5%)
Query: 195 DSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLL 254
DS L +I IVD +VK++D+AG + AKQAL E+VILP+ R +LFTGLR PARGLLL
Sbjct: 94 DSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLL 153
Query: 255 FGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF------------- 301
FGPPGNGKTMLAKAVA+ES ATFFN+SA+SLTSK+VGEGEKLVR LF
Sbjct: 154 FGPPGNGKTMLAKAVAAESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFI 213
Query: 302 -MIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRL 360
+DS++ R E+DASRRLK+EFLI+FDGV S +D V+VMGATN+PQELD+AVLRR
Sbjct: 214 DQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQELDEAVLRRF 273
Query: 361 VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 420
+KR+YV LP+E R LLLK+ L Q L +L +L R T+GYSGSDL AL ++AA+ P
Sbjct: 274 IKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDAALGP 333
Query: 421 IRELGT-NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471
IREL + + A+++R +R DF +++ I+ S++ E +WN++FG
Sbjct: 334 IRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFG 385
>pdb|3D8B|A Chain A, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
pdb|3D8B|B Chain B, Crystal Structure Of Human Fidgetin-Like Protein 1 In
Complex With Adp
Length = 357
Score = 296 bits (759), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 139/308 (45%), Positives = 210/308 (68%), Gaps = 15/308 (4%)
Query: 181 TGSSKPLAEAGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRD 240
T + P+ E + K++E+I I+D P V WED+AG+E AK + E+V+ P R D
Sbjct: 49 TEPAHPVDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPD 108
Query: 241 LFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTL 300
+FTGLR P +G+LLFGPPG GKT++ K +AS+S ATFF++SASSLTSKWVGEGEK+VR L
Sbjct: 109 IFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSKWVGEGEKMVRAL 168
Query: 301 FM--------------IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346
F IDS++S R E+++SRR+K+EFL+Q DG T++ D ++V+GAT
Sbjct: 169 FAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGATTSSEDRILVVGAT 228
Query: 347 NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG 406
N+PQE+D+A RRLVKR+Y+PLP+ + R+ ++ + + + L ++E++V++++ +SG
Sbjct: 229 NRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSG 288
Query: 407 SDLQALCEEAAMMPIRELGT-NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQ 465
+D+ LC EA++ PIR L T +I T+ +Q+RP+ Y DF+ A +RPS++ E E
Sbjct: 289 ADMTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYEN 348
Query: 466 WNREFGSN 473
WN+ FG
Sbjct: 349 WNKTFGCG 356
>pdb|3B9P|A Chain A, Spastin
Length = 297
Score = 279 bits (714), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 151/293 (51%), Positives = 204/293 (69%), Gaps = 20/293 (6%)
Query: 197 KLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFG 256
KLV++I IV+ V+W D+AG + AKQAL EMVILP+ R +LFTGLR PA+GLLLFG
Sbjct: 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFG 61
Query: 257 PPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFM-------------- 302
PPGNGKT+LA+AVA+E ATF N+SA+SLTSK+VG+GEKLVR LF
Sbjct: 62 PPGNGKTLLARAVATECSATFLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDE 121
Query: 303 IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN-DLVIVMGATNKPQELDDAVLRRLV 361
+DS++S R ++E++ASRRLK+EFL++FDG+ NP+ D ++V+ ATN+PQELD+A LRR
Sbjct: 122 VDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAALRRFT 181
Query: 362 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 421
KR+YV LPDE R LLL L+ Q L L RL + T+GYSGSDL AL ++AA+ PI
Sbjct: 182 KRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241
Query: 422 RELGTNILTVKA---NQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471
REL N+ VK + +R + +DF ++ IR S+ E+W++++G
Sbjct: 242 REL--NVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYG 292
>pdb|2ZAM|A Chain A, Crystal Structure Of Mouse Skd1VPS4B APO-Form
pdb|2ZAN|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ATP-Form
pdb|2ZAO|A Chain A, Crystal Structure Of Mouse Skd1VPS4B ADP-Form
Length = 444
Score = 229 bits (585), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 124/261 (47%), Positives = 167/261 (63%), Gaps = 16/261 (6%)
Query: 179 EKTGSSKPLAEAGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKR 238
EK S AE+ + KL + AIV P+VKW DVAGLE AK+AL E VILP K
Sbjct: 97 EKGNDSDGEAESDDPEKKKLQNQLQGAIVIERPNVKWSDVAGLEGAKEALKEAVILPIKF 156
Query: 239 RDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTSKWVGEGEKLV 297
LFTG R P RG+LLFGPPG GK+ LAKAVA+E+ +TFF++S+S L SKW+GE EKLV
Sbjct: 157 PHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKWLGESEKLV 216
Query: 298 RTLFM--------------IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 343
+ LF IDS+ +R NE++A+RR+K+EFL+Q GV + ND ++V+
Sbjct: 217 KNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGVD-NDGILVL 275
Query: 344 GATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 403
GATN P LD A+ RR KRIY+PLP+ + R + + L SL D + L R+T+G
Sbjct: 276 GATNIPWVLDSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDG 335
Query: 404 YSGSDLQALCEEAAMMPIREL 424
YSG+D+ + +A M P+R++
Sbjct: 336 YSGADISIIVRDALMQPVRKV 356
>pdb|2QP9|X Chain X, Crystal Structure Of S.Cerevisiae Vps4
pdb|2QPA|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
pdb|2QPA|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Adp
Length = 355
Score = 229 bits (583), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 192/331 (58%), Gaps = 48/331 (14%)
Query: 188 AEAGNGYDSK-LVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR 246
E G D+K L +++AI+ P+VKWEDVAGLE AK+AL E VILP K LF G R
Sbjct: 22 GEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR 81
Query: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF----- 301
+P G+LL+GPPG GK+ LAKAVA+E+ +TFF+VS+S L SKW+GE EKLV+ LF
Sbjct: 82 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 141
Query: 302 ---------MIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 352
+D++ TR E++ASRR+K+E L+Q +GV N + V+V+GATN P +L
Sbjct: 142 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQL 200
Query: 353 DDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412
D A+ RR +RIY+PLPD R + + + L D L TEGYSGSD+ +
Sbjct: 201 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVV 260
Query: 413 CEEAAMMPIRELG--------------TNILT----------------VKANQLR--PLR 440
++A M PIR++ T LT ++A++L+ L
Sbjct: 261 VKDALMQPIRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLT 320
Query: 441 YEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471
+DF KA+ RP++N+ + EQ+ R+FG
Sbjct: 321 IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 351
>pdb|3EIH|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|B Chain B, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
pdb|3EIH|C Chain C, Crystal Structure Of S.Cerevisiae Vps4 In The Presence Of
Atpgammas
Length = 340
Score = 228 bits (581), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 136/331 (41%), Positives = 192/331 (58%), Gaps = 48/331 (14%)
Query: 188 AEAGNGYDSK-LVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR 246
E G D+K L +++AI+ P+VKWEDVAGLE AK+AL E VILP K LF G R
Sbjct: 7 GEDNGGEDNKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNR 66
Query: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF----- 301
+P G+LL+GPPG GK+ LAKAVA+E+ +TFF+VS+S L SKW+GE EKLV+ LF
Sbjct: 67 KPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARE 126
Query: 302 ---------MIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 352
+D++ TR E++ASRR+K+E L+Q +GV N + V+V+GATN P +L
Sbjct: 127 NKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQL 185
Query: 353 DDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412
D A+ RR +RIY+PLPD R + + + L D L TEGYSGSD+ +
Sbjct: 186 DSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVV 245
Query: 413 CEEAAMMPIRELG--------------TNILT----------------VKANQLR--PLR 440
++A M PIR++ T LT ++A++L+ L
Sbjct: 246 VKDALMQPIRKIQSATHFKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLT 305
Query: 441 YEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471
+DF KA+ RP++N+ + EQ+ R+FG
Sbjct: 306 IKDFLKAIKSTRPTVNEDDLLKQEQFTRDFG 336
>pdb|3EIE|A Chain A, Crystal Structure Of S.Cerevisiae Vps4 In The So4-Bound
State
Length = 322
Score = 227 bits (578), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 132/314 (42%), Positives = 184/314 (58%), Gaps = 47/314 (14%)
Query: 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKT 263
TAI+ P+VKWEDVAGLE AK+AL E VILP K LF G R+P G+LL+GPPG GK+
Sbjct: 6 TAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKS 65
Query: 264 MLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMST 309
LAKAVA+E+ +TFF+VS+S L SKW+GE EKLV+ LF +D++ T
Sbjct: 66 YLAKAVATEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGT 125
Query: 310 RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369
R E++ASRR+K+E L+Q +GV N + V+V+GATN P +LD A+ RR +RIY+PLP
Sbjct: 126 RGEGESEASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLP 184
Query: 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG---- 425
D R + + + L D L TEGYSGSD+ + ++A M PIR++
Sbjct: 185 DLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATH 244
Query: 426 ----------TNILT----------------VKANQLR--PLRYEDFQKAMAVIRPSLNK 457
T LT ++A++L+ L +DF KA+ RP++N+
Sbjct: 245 FKDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNE 304
Query: 458 SKWEELEQWNREFG 471
+ EQ+ R+FG
Sbjct: 305 DDLLKQEQFTRDFG 318
>pdb|1XWI|A Chain A, Crystal Structure Of Vps4b
Length = 322
Score = 223 bits (567), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 156/235 (66%), Gaps = 16/235 (6%)
Query: 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTM 264
AIV P+VKW DVAGLE AK+AL E VILP K LFTG R P RG+LLFGPPG GK+
Sbjct: 1 AIVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSY 60
Query: 265 LAKAVASES-QATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMST 309
LAKAVA+E+ +TFF++S+S L SKW+GE EKLV+ LF IDS+ +
Sbjct: 61 LAKAVATEANNSTFFSISSSDLVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGS 120
Query: 310 RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369
R NE++A+RR+K+EFL+Q GV + ND ++V+GATN P LD A+ RR KRIY+PLP
Sbjct: 121 RSENESEAARRIKTEFLVQMQGVGVD-NDGILVLGATNIPWVLDSAIRRRFEKRIYIPLP 179
Query: 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424
+ + R + K L SL D L R+T+GYSG+D+ + +A M P+R++
Sbjct: 180 EPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKV 234
>pdb|2RKO|A Chain A, Crystal Structure Of The Vps4p-Dimer
Length = 331
Score = 222 bits (565), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 129/307 (42%), Positives = 180/307 (58%), Gaps = 47/307 (15%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVA 270
P+VKWEDVAGLE AK+AL E VILP K LF G R+P G+LL+GPPG GK+ LAKAVA
Sbjct: 22 PNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVA 81
Query: 271 SESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTRMANEND 316
+E+ +TFF+VS+S L SKW+GE EKLV+ LF +D++ TR E++
Sbjct: 82 TEANSTFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDEVDALTGTRGEGESE 141
Query: 317 ASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRL 376
ASRR+K+E L+Q +GV N + V+V+GATN P +LD A+ RR +RIY+PLPD R
Sbjct: 142 ASRRIKTELLVQMNGV-GNDSQGVLVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTT 200
Query: 377 LLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG----------- 425
+ + + L D L TEGYSGSD+ + ++A M PIR++
Sbjct: 201 MFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHFKDVSTE 260
Query: 426 ---TNILT----------------VKANQLR--PLRYEDFQKAMAVIRPSLNKSKWEELE 464
T LT ++A++L+ L +DF KA+ RP++N+ + E
Sbjct: 261 DDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQE 320
Query: 465 QWNREFG 471
Q+ R+FG
Sbjct: 321 QFTRDFG 327
>pdb|1R7R|A Chain A, The Crystal Structure Of Murine P97VCP AT 3.6A
Length = 816
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 159/302 (52%), Gaps = 43/302 (14%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAV 269
P V WED+ GLE K+ L E+V P + D F P++G+L +GPPG GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTR---MA 312
A+E QA F ++ L + W GE E VR +F +DSI R +
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 591
Query: 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPD 370
+ A+ R+ ++ L + DG+++ N V ++GATN+P +D A+LR RL + IY+PLPD
Sbjct: 592 DGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 371 ENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG----- 425
E R +LK L+ + DLE L + T G+SG+DL +C+ A + IRE
Sbjct: 650 EKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708
Query: 426 ------TNILTVKANQLRP---LRYEDFQKAMAVIRPSLNKSKWEELE------QWNREF 470
TN ++ + P +R + F++AM R S++ + + E Q +R F
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 471 GS 472
GS
Sbjct: 769 GS 770
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVAS 271
V ++DV G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3CF1|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF1|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPADP.ALFX
pdb|3CF2|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF2|D Chain D, Structure Of P97VCP IN COMPLEX WITH ADPAMP-Pnp
pdb|3CF3|A Chain A, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|B Chain B, Structure Of P97VCP IN COMPLEX WITH ADP
pdb|3CF3|C Chain C, Structure Of P97VCP IN COMPLEX WITH ADP
Length = 806
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 105/302 (34%), Positives = 159/302 (52%), Gaps = 43/302 (14%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAV 269
P V WED+ GLE K+ L E+V P + D F P++G+L +GPPG GKT+LAKA+
Sbjct: 472 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 531
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTR---MA 312
A+E QA F ++ L + W GE E VR +F +DSI R +
Sbjct: 532 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 591
Query: 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPD 370
+ A+ R+ ++ L + DG+++ N V ++GATN+P +D A+LR RL + IY+PLPD
Sbjct: 592 DGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 649
Query: 371 ENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG----- 425
E R +LK L+ + DLE L + T G+SG+DL +C+ A + IRE
Sbjct: 650 EKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIESEIR 708
Query: 426 ------TNILTVKANQLRP---LRYEDFQKAMAVIRPSLNKSKWEELE------QWNREF 470
TN ++ + P +R + F++AM R S++ + + E Q +R F
Sbjct: 709 RERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQSRGF 768
Query: 471 GS 472
GS
Sbjct: 769 GS 770
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVAS 271
V ++D+ G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3H4M|A Chain A, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|B Chain B, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
pdb|3H4M|C Chain C, Aaa Atpase Domain Of The Proteasome- Activating
Nucleotidase
Length = 285
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 95/239 (39%), Positives = 137/239 (57%), Gaps = 25/239 (10%)
Query: 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLF--TGLRRPARGLLLFGPPGNGKTM 264
VD P+V++ED+ GLEK Q + E+V LP K +LF G+ P +G+LL+GPPG GKT+
Sbjct: 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIE-PPKGILLYGPPGTGKTL 66
Query: 265 LAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTR 310
LAKAVA+E+ ATF V S L K++GEG LV+ +F ID+I + R
Sbjct: 67 LAKAVATETNATFIRVVGSELVKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKR 126
Query: 311 ---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIY 365
+ + +R + L + DG + + V ++GATN+P LD A+LR R + I
Sbjct: 127 TDALTGGDREVQRTLMQLLAEMDGFDARGD--VKIIGATNRPDILDPAILRPGRFDRIIE 184
Query: 366 VPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424
VP PDE R +LK + + +LE + + TEG G++L+A+C EA M IREL
Sbjct: 185 VPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL 242
>pdb|3CF0|A Chain A, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|B Chain B, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|C Chain C, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|D Chain D, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|E Chain E, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|F Chain F, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|G Chain G, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|H Chain H, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|I Chain I, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|J Chain J, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|K Chain K, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|L Chain L, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|M Chain M, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
pdb|3CF0|N Chain N, Structure Of D2 Subdomain Of P97VCP IN COMPLEX WITH ADP
Length = 301
Score = 152 bits (383), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 129/229 (56%), Gaps = 23/229 (10%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAV 269
P V WED+ GLE K+ L E+V P + D F P++G+L +GPPG GKT+LAKA+
Sbjct: 10 PQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAI 69
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTR---MA 312
A+E QA F ++ L + W GE E VR +F +DSI R +
Sbjct: 70 ANECQANFISIKGPELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIG 129
Query: 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPD 370
+ A+ R+ ++ L + DG+++ N V ++GATN+P +D A+LR RL + IY+PLPD
Sbjct: 130 DGGGAADRVINQILTEMDGMSTKKN--VFIIGATNRPDIIDPAILRPGRLDQLIYIPLPD 187
Query: 371 ENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 419
E R +LK L+ + DLE L + T G+SG+DL +C+ A +
Sbjct: 188 EKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKL 235
>pdb|4B4T|M Chain M, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 434
Score = 139 bits (350), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 95/276 (34%), Positives = 150/276 (54%), Gaps = 42/276 (15%)
Query: 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLF--TGLRRPARGLLLFGPPGNGKTM 264
VD P+ + DV GL+K + L+E ++LP KR D F G+R P +G L++GPPG GKT+
Sbjct: 172 VDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAP-KGALMYGPPGTGKTL 230
Query: 265 LAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTR 310
LA+A A+++ ATF ++A L ++GEG KLVR F +D+I + R
Sbjct: 231 LARACAAQTNATFLKLAAPQLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKR 290
Query: 311 MANENDASRRLKS---EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIY 365
+E R ++ E L Q DG +S +D V V+ ATN+ LD A+LR RL ++I
Sbjct: 291 FDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAATNRVDVLDPALLRSGRLDRKIE 348
Query: 366 VPLPDENVRRLLLK-HKLKGQAFSLPGGDL--ERLVRETEGYSGSDLQALCEEAAMMPIR 422
PLP E+ R +L+ H K D+ + L R T+ ++G+ L+A+ EA M+ +R
Sbjct: 349 FPLPSEDSRAQILQIHSRKMTT----DDDINWQELARSTDEFNGAQLKAVTVEAGMIALR 404
Query: 423 ELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKS 458
N +++EDF + ++ ++ +KS
Sbjct: 405 -----------NGQSSVKHEDFVEGISEVQARKSKS 429
>pdb|1E32|A Chain A, Structure Of The N-Terminal Domain And The D1 Aaa Domain
Of Membrane Fusion Atpase P97
pdb|1S3S|A Chain A, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|B Chain B, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|C Chain C, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|D Chain D, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|E Chain E, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
pdb|1S3S|F Chain F, Crystal Structure Of Aaa Atpase P97VCP ND1 IN COMPLEX WITH
P47 C
Length = 458
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 82/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVAS 271
V ++DV G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU3|A Chain A, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
pdb|3HU3|B Chain B, Structure Of P97 N-D1 R155h Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVAS 271
V ++D+ G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU1|A Chain A, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|B Chain B, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|C Chain C, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|D Chain D, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|E Chain E, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
pdb|3HU1|F Chain F, Structure Of P97 N-D1 R95g Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVAS 271
V ++D+ G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|3HU2|A Chain A, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|B Chain B, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|C Chain C, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|D Chain D, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|E Chain E, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
pdb|3HU2|F Chain F, Structure Of P97 N-D1 R86a Mutant In Complex With Atpgs
Length = 489
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/228 (35%), Positives = 122/228 (53%), Gaps = 20/228 (8%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVAS 271
V ++D+ G K + EMV LP + LF + +P RG+LL+GPPG GKT++A+AVA+
Sbjct: 201 VGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVAN 260
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMANENDA 317
E+ A FF ++ + SK GE E +R F +D+I R +
Sbjct: 261 ETGAFFFLINGPEIMSKLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEV 320
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRR 375
RR+ S+ L DG+ + VIVM ATN+P +D A+ R R + + + +PD R
Sbjct: 321 ERRIVSQLLTLMDGLKQRAH--VIVMAATNRPNSIDPALRRFGRFDREVDIGIPDATGRL 378
Query: 376 LLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
+L+ K + DLE++ ET G+ G+DL ALC EAA+ IR+
Sbjct: 379 EILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRK 425
>pdb|4B4T|J Chain J, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 405
Score = 127 bits (320), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 82/245 (33%), Positives = 135/245 (55%), Gaps = 27/245 (11%)
Query: 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLF--TGLRRPARGLLLFGPP 258
+++ +V++ P ++ V GL K + + E++ LP K +LF G+ +P +G++L+GPP
Sbjct: 133 LVSLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQP-KGVILYGPP 191
Query: 259 GNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------ID 304
G GKT+LA+AVA + F VS + L K++GEG ++VR LF+ ID
Sbjct: 192 GTGKTLLARAVAHHTDCKFIRVSGAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEID 251
Query: 305 SIMSTRMANENDAS---RRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--R 359
SI STR+ +R E L Q DG ++ N +I+ ATN+ LD A+LR R
Sbjct: 252 SIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIM--ATNRLDILDPALLRPGR 309
Query: 360 LVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGG-DLERLVRETEGYSGSDLQALCEEAAM 418
+ ++I P P R +L ++ + +L G +L ++ + G SG+D++ +C EA M
Sbjct: 310 IDRKIEFPPPSVAARAEIL--RIHSRKMNLTRGINLRKVAEKMNGCSGADVKGVCTEAGM 367
Query: 419 MPIRE 423
+RE
Sbjct: 368 YALRE 372
>pdb|4B4T|K Chain K, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 428
Score = 127 bits (318), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 125/234 (53%), Gaps = 24/234 (10%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAV 269
P V + DV GL+ KQ + E V LP + DL+ + P RG+LL+GPPG GKTML KAV
Sbjct: 167 PDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAV 226
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTRMANEN 315
A+ ++A F V+ S K++GEG ++VR +F +DSI + R +
Sbjct: 227 ANSTKAAFIRVNGSEFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQT 286
Query: 316 DASR---RLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVP-LP 369
+ R R+ E L Q DG + N V V+ ATN+ LD A+LR RL ++I P L
Sbjct: 287 GSDREVQRILIELLTQMDGFDQSTN--VKVIMATNRADTLDPALLRPGRLDRKIEFPSLR 344
Query: 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
D RRL+ + + P DL+ L+ + SG+ + A+ +EA + +R+
Sbjct: 345 DRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397
>pdb|4B4T|I Chain I, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 125 bits (314), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 80/243 (32%), Positives = 134/243 (55%), Gaps = 23/243 (9%)
Query: 201 MINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPG 259
M++ +D+SP+ + D+ GLE Q + E V LP +L+ + +P +G++L+G PG
Sbjct: 167 MVSVMKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPG 226
Query: 260 NGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDS 305
GKT+LAKAVA+++ ATF + S L K++G+G +L R +F ID+
Sbjct: 227 TGKTLLAKAVANQTSATFLRIVGSELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDA 286
Query: 306 IMSTRMANENDASRRLKS---EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RL 360
I + R + + R ++ E L Q DG + D+ ++M ATNK + LD A++R R+
Sbjct: 287 IGTKRYDSNSGGEREIQRTMLELLNQLDGF-DDRGDVKVIM-ATNKIETLDPALIRPGRI 344
Query: 361 VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 420
++I PD + ++ +L S +LE LV + SG+D+QA+C EA ++
Sbjct: 345 DRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLA 403
Query: 421 IRE 423
+RE
Sbjct: 404 LRE 406
>pdb|2X8A|A Chain A, Human Nuclear Valosin Containing Protein Like (Nvl), C-
Terminal Aaa-Atpase Domain
Length = 274
Score = 121 bits (304), Expect = 7e-28, Method: Compositional matrix adjust.
Identities = 90/270 (33%), Positives = 141/270 (52%), Gaps = 27/270 (10%)
Query: 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFT--GLRRPARGLLLFGPPGNGKTMLAKA 268
P+V W D+ LE ++ L ++ P + D F GL PA G+LL GPPG GKT+LAKA
Sbjct: 5 PNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPA-GVLLAGPPGCGKTLLAKA 63
Query: 269 VASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTRMANE 314
VA+ES F +V L + +VGE E+ VR +F +D++ R E
Sbjct: 64 VANESGLNFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRE 123
Query: 315 NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDEN 372
AS R+ ++ L + DG+ + V +M ATN+P +D A+LR RL K ++V LP
Sbjct: 124 TGASVRVVNQLLTEMDGLEARQQ--VFIMAATNRPDIIDPAILRPGRLDKTLFVGLPPPA 181
Query: 373 VRRLLLKHKLKGQAFSLPGGD--LERLVRE--TEGYSGSDLQALCEEAAMMPIR-ELGTN 427
R +LK K D LE + + + Y+G+DL AL EA++ +R E+
Sbjct: 182 DRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMARQ 241
Query: 428 ILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457
+ +L+ + ++ F++A +R S++K
Sbjct: 242 KSGNEKGELK-VSHKHFEEAFKKVRSSISK 270
>pdb|2R62|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R62|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh
pdb|2R65|A Chain A, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|B Chain B, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|C Chain C, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|D Chain D, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
pdb|2R65|E Chain E, Crystal Structure Of Helicobacter Pylori Atp Dependent
Protease, Ftsh Adp Complex
Length = 268
Score = 119 bits (299), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 85/233 (36%), Positives = 130/233 (55%), Gaps = 24/233 (10%)
Query: 211 PSVKWEDVAGLEKAKQALMEMV-ILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV 269
P+V+++D+AG E+AK+ ++E+V L R G + P +G+LL GPPG GKT+LAKAV
Sbjct: 6 PNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIP-KGVLLVGPPGTGKTLLAKAV 64
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTRMA--- 312
A E+ FF++ SS +VG G VR LF ID+I +R A
Sbjct: 65 AGEAHVPFFSMGGSSFIEMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGV 124
Query: 313 -NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLP 369
+ ND + ++ L + DG S N VIV+ ATN+P+ LD A++R R +++ V P
Sbjct: 125 VSGNDEREQTLNQLLAEMDGFGSE-NAPVIVLAATNRPEILDPALMRPGRFDRQVLVDKP 183
Query: 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 422
D N R +LK +KG + +L+ + + T G +G+DL + EAA++ R
Sbjct: 184 DFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGR 235
>pdb|4B4T|H Chain H, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 467
Score = 119 bits (297), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 122/241 (50%), Gaps = 23/241 (9%)
Query: 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGN 260
+ V+ P V + DV G + + L E+V LP + F L P +G+LL+GPPG
Sbjct: 195 VTMMTVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGT 254
Query: 261 GKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSI 306
GKT+ A+AVA+ + ATF V S L K+VGEG ++VR LF ID++
Sbjct: 255 GKTLCARAVANRTDATFIRVIGSELVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAV 314
Query: 307 MSTRM---ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLV 361
R A ++ +R E + Q DG +P + VM ATN+P LD A+LR R+
Sbjct: 315 GGARFDDGAGGDNEVQRTMLELITQLDGF--DPRGNIKVMFATNRPNTLDPALLRPGRID 372
Query: 362 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 421
+++ LPD R + + K + G E + R +G++L+++C EA M I
Sbjct: 373 RKVEFSLPDLEGRANIFRIHSKSMSVER-GIRWELISRLCPNSTGAELRSVCTEAGMFAI 431
Query: 422 R 422
R
Sbjct: 432 R 432
>pdb|2CE7|A Chain A, Edta Treated
pdb|2CE7|B Chain B, Edta Treated
pdb|2CE7|C Chain C, Edta Treated
pdb|2CE7|D Chain D, Edta Treated
pdb|2CE7|E Chain E, Edta Treated
pdb|2CE7|F Chain F, Edta Treated
pdb|2CEA|A Chain A, Cell Division Protein Ftsh
pdb|2CEA|B Chain B, Cell Division Protein Ftsh
pdb|2CEA|C Chain C, Cell Division Protein Ftsh
pdb|2CEA|D Chain D, Cell Division Protein Ftsh
pdb|2CEA|E Chain E, Cell Division Protein Ftsh
pdb|2CEA|F Chain F, Cell Division Protein Ftsh
Length = 476
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 88/258 (34%), Positives = 136/258 (52%), Gaps = 39/258 (15%)
Query: 213 VKWEDVAGLEKAKQALMEMVIL---PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV 269
V ++DV G E+A + L E+V P+K + G R P +G+LL GPPG GKT+LA+AV
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRI--GARMP-KGILLVGPPGTGKTLLARAV 69
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTR---MA 312
A E+ FF++S S +VG G VR LF ID++ R +
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPD 370
+D + ++ L++ DG S +IVM ATN+P LD A+LR R K+I V PD
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 371 ENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430
R+ +L+ + + + +LE + + T G+ G+DL+ L EAA++ RE G + +T
Sbjct: 188 MLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAARE-GRDKIT 245
Query: 431 VKANQLRPLRYEDFQKAM 448
+K DF++A+
Sbjct: 246 MK----------DFEEAI 253
>pdb|4B4T|L Chain L, Near-Atomic Resolution Structural Model Of The Yeast 26s
Proteasome
Length = 437
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 77/233 (33%), Positives = 125/233 (53%), Gaps = 27/233 (11%)
Query: 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLF--TGLRRPARGLLLFGPPGNGKTMLAKAVA 270
+ ++ + GL + + L E++ LP K ++F G++ P +G+LL+GPPG GKT+LAKAVA
Sbjct: 178 ITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIK-PPKGVLLYGPPGTGKTLLAKAVA 236
Query: 271 SESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTRMANEND 316
+ A F AS + K++GE +++R +F +D+I R +
Sbjct: 237 ATIGANFIFSPASGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTS 296
Query: 317 ASRRLKS---EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDE 371
A R ++ E L Q DG N I+M ATN+P LD A+LR RL +++ +PLP+E
Sbjct: 297 ADREIQRTLMELLTQMDGF-DNLGQTKIIM-ATNRPDTLDPALLRPGRLDRKVEIPLPNE 354
Query: 372 NVRRLLLK-HKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
R + K H K + D E V+ ++G++G+D++ EA IR+
Sbjct: 355 AGRLEIFKIHTAKVKKTG--EFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405
>pdb|3KDS|E Chain E, Apo-ftsh Crystal Structure
pdb|3KDS|F Chain F, Apo-ftsh Crystal Structure
pdb|3KDS|G Chain G, Apo-ftsh Crystal Structure
Length = 465
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 87/258 (33%), Positives = 135/258 (52%), Gaps = 39/258 (15%)
Query: 213 VKWEDVAGLEKAKQALMEMVIL---PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV 269
V ++DV G E+A + L E+V P+K + G R P +G+LL GPPG G T+LA+AV
Sbjct: 13 VTFKDVGGAEEAIEELKEVVEFLKDPSKFNRI--GARMP-KGILLVGPPGTGATLLARAV 69
Query: 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLFM--------------IDSIMSTR---MA 312
A E+ FF++S S +VG G VR LF ID++ R +
Sbjct: 70 AGEANVPFFHISGSDFVELFVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLG 129
Query: 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPD 370
+D + ++ L++ DG S +IVM ATN+P LD A+LR R K+I V PD
Sbjct: 130 GGHDEREQTLNQLLVEMDGFDSKEG--IIVMAATNRPDILDPALLRPGRFDKKIVVDPPD 187
Query: 371 ENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430
R+ +L+ + + + +LE + + T G+ G+DL+ L EAA++ RE G + +T
Sbjct: 188 MLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAARE-GRDKIT 245
Query: 431 VKANQLRPLRYEDFQKAM 448
+K DF++A+
Sbjct: 246 MK----------DFEEAI 253
>pdb|1LV7|A Chain A, Crystal Structure Of The Aaa Domain Of Ftsh
Length = 257
Score = 112 bits (279), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 78/230 (33%), Positives = 122/230 (53%), Gaps = 28/230 (12%)
Query: 215 WEDVAGLEKAKQALMEMVIL---PAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271
+ DVAG ++AK+ + E+V P++ + L G + P +G+L+ GPPG GKT+LAKA+A
Sbjct: 11 FADVAGCDEAKEEVAELVEYLREPSRFQKL--GGKIP-KGVLMVGPPGTGKTLLAKAIAG 67
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMSTR---MANE 314
E++ FF +S S +VG G VR +F ID++ R +
Sbjct: 68 EAKVPFFTISGSDFVEMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGG 127
Query: 315 NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDEN 372
+D + ++ L++ DG N +IV+ ATN+P LD A+LR R +++ V LPD
Sbjct: 128 HDEREQTLNQMLVEMDGFEGNEG--IIVIAATNRPDVLDPALLRPGRFDRQVVVGLPDVR 185
Query: 373 VRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 422
R +LK ++ + P D + R T G+SG+DL L EAA+ R
Sbjct: 186 GREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAAR 234
>pdb|2QZ4|A Chain A, Human Paraplegin, Aaa Domain In Complex With Adp
Length = 262
Score = 111 bits (277), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 126/241 (52%), Gaps = 25/241 (10%)
Query: 213 VKWEDVAGLEKAKQALMEMV-ILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271
V ++DVAG+ +AK + E V L + R L G + P +G LL GPPG GKT+LAKAVA+
Sbjct: 3 VSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVP-KGALLLGPPGCGKTLLAKAVAT 61
Query: 272 ESQATFFNVSASSLTSKWVGEGEKLVRTLF-----------MIDSI------MSTRMAN- 313
E+Q F ++ + G G VR+LF ID I ST M+
Sbjct: 62 EAQVPFLAMAGAEFVEVIGGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGF 121
Query: 314 ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDE 371
N + ++ L++ DG+ + D VIV+ +TN+ LD A++R RL + +++ LP
Sbjct: 122 SNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADILDGALMRPGRLDRHVFIDLPTL 179
Query: 372 NVRRLLLKHKLKGQAFSLPGGDL-ERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430
RR + + LK + +RL T G+SG+D+ +C EAA+ RE T++ T
Sbjct: 180 QERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREGHTSVHT 239
Query: 431 V 431
+
Sbjct: 240 L 240
>pdb|2DHR|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|2DHR|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 499
Score = 94.0 bits (232), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 206 IVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGK 262
++ +P V ++DVAG E+AK+ ++E + P++ ++ G R P +G+LL GPPG GK
Sbjct: 21 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGK 77
Query: 263 TMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMS 308
T LA+AVA E++ F S S +VG G VR LF ID++
Sbjct: 78 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 137
Query: 309 TR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKR 363
R + ND + ++ L++ DG + ++VM ATN+P LD A+LR R ++
Sbjct: 138 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQ 195
Query: 364 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408
I + PD R +L+ +G+ + DL L + T G+ G+D
Sbjct: 196 IAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 239
>pdb|4EIW|A Chain A, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|B Chain B, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|C Chain C, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|D Chain D, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|E Chain E, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
pdb|4EIW|F Chain F, Whole Cytosolic Region Of Atp-Dependent Metalloprotease
Ftsh (G399l)
Length = 508
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 206 IVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGK 262
++ +P V ++DVAG E+AK+ ++E + P++ ++ G R P +G+LL GPPG GK
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGK 86
Query: 263 TMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMS 308
T LA+AVA E++ F S S +VG G VR LF ID++
Sbjct: 87 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146
Query: 309 TR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKR 363
R + ND + ++ L++ DG + ++VM ATN+P LD A+LR R ++
Sbjct: 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEKDTA--IVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 364 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408
I + PD R +L+ +G+ + DL L + T G+ G+D
Sbjct: 205 IAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 248
>pdb|1IY2|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
Length = 278
Score = 94.0 bits (232), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 117/225 (52%), Gaps = 28/225 (12%)
Query: 206 IVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGK 262
++ +P V ++DVAG E+AK+ ++E + P++ ++ G R P +G+LL GPPG GK
Sbjct: 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVGK 86
Query: 263 TMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIMS 308
T LA+AVA E++ F S S +VG G VR LF ID++
Sbjct: 87 THLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGR 146
Query: 309 TR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKR 363
R + ND + ++ L++ DG + ++VM ATN+P LD A+LR R ++
Sbjct: 147 KRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDRQ 204
Query: 364 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408
I + PD R +L+ +G+ + DL L + T G+ G+D
Sbjct: 205 IAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 248
>pdb|1IXZ|A Chain A, Crystal Structure Of The Ftsh Atpase Domain From Thermus
Thermophilus
pdb|1IY0|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Amp-Pnp
From Thermus Thermophilus
pdb|1IY1|A Chain A, Crystal Structure Of The Ftsh Atpase Domain With Adp From
Thermus Thermophilus
Length = 254
Score = 93.6 bits (231), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 118/226 (52%), Gaps = 28/226 (12%)
Query: 205 AIVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNG 261
+++ +P V ++DVAG E+AK+ ++E + P++ ++ G R P +G+LL GPPG G
Sbjct: 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEM--GARIP-KGVLLVGPPGVG 61
Query: 262 KTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLF--------------MIDSIM 307
KT LA+AVA E++ F S S +VG G VR LF ID++
Sbjct: 62 KTHLARAVAGEARVPFITASGSDFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVG 121
Query: 308 STR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVK 362
R + ND + ++ L++ DG + ++VM ATN+P LD A+LR R +
Sbjct: 122 RKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDILDPALLRPGRFDR 179
Query: 363 RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408
+I + PD R +L+ +G+ + DL L + T G+ G+D
Sbjct: 180 QIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGAD 224
>pdb|3HWS|A Chain A, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|B Chain B, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|C Chain C, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|D Chain D, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|E Chain E, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
pdb|3HWS|F Chain F, Crystal Structure Of Nucleotide-Bound Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 218 VAGLEKAKQALMEMVILPAKRR---DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274
V G E+AK+ L V KR D G+ +LL GP G+GKT+LA+ +A
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 275 ATFFNVSASSLT-SKWVGEG-EKLVRTLF 301
F A++LT + +VGE E +++ L
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLL 105
>pdb|3HTE|A Chain A, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|B Chain B, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|C Chain C, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|D Chain D, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|E Chain E, Crystal Structure Of Nucleotide-Free Hexameric Clpx
pdb|3HTE|F Chain F, Crystal Structure Of Nucleotide-Free Hexameric Clpx
Length = 363
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 46/89 (51%), Gaps = 5/89 (5%)
Query: 218 VAGLEKAKQALMEMVILPAKRR---DLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274
V G E+AK+ L V KR D G+ +LL GP G+GKT+LA+ +A
Sbjct: 17 VIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLD 76
Query: 275 ATFFNVSASSLT-SKWVGEG-EKLVRTLF 301
F A++LT + +VGE E +++ L
Sbjct: 77 VPFTMADATTLTEAGYVGEDVENIIQKLL 105
>pdb|3M6A|A Chain A, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|B Chain B, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|C Chain C, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|D Chain D, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|E Chain E, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
pdb|3M6A|F Chain F, Crystal Structure Of Bacillus Subtilis Lon C-Terminal
Domain
Length = 543
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 36/66 (54%), Gaps = 6/66 (9%)
Query: 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA 275
E+ GLEK K+ ++E + + + L L+ P L L GPPG GKT LAK++A
Sbjct: 81 EEHHGLEKVKERILEYLAV----QKLTKSLKGPI--LCLAGPPGVGKTSLAKSIAKSLGR 134
Query: 276 TFFNVS 281
F +S
Sbjct: 135 KFVRIS 140
>pdb|2C9O|A Chain A, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|B Chain B, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
pdb|2C9O|C Chain C, 3d Structure Of The Human Ruvb-Like Helicase Ruvbl1
Length = 456
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 41/82 (50%), Gaps = 9/82 (10%)
Query: 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE--SQA 275
+ G E A++A +V +L + R +LL GPPG GKT LA A+A E S+
Sbjct: 39 LVGQENAREACGVIV-------ELIKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKV 91
Query: 276 TFFNVSASSLTSKWVGEGEKLV 297
F + S + S + + E L+
Sbjct: 92 PFCPMVGSEVYSTEIKKTEVLM 113
>pdb|3PVS|A Chain A, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|B Chain B, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|C Chain C, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
pdb|3PVS|D Chain D, Structure And Biochemical Activities Of Escherichia Coli
Mgsa
Length = 447
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 45/173 (26%), Positives = 73/173 (42%), Gaps = 50/173 (28%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLV--------RTLFMI 303
++L+GPPG GKT LA+ +A + A +SA + K + E + RT+ +
Sbjct: 53 MILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFV 112
Query: 304 DSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQELDDAVLRRLV 361
D + + ++ FL + T + +GAT N EL+ A+L R
Sbjct: 113 DEVHRFNKSQQD--------AFLPHIEDGT------ITFIGATTENPSFELNSALLSR-- 156
Query: 362 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE-----TEGYSGSDL 409
R+Y LLK SL D+E+++ + T GY G D+
Sbjct: 157 ARVY-----------LLK--------SLSTEDIEQVLTQAMEDKTRGYGGQDI 190
>pdb|2XSZ|A Chain A, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|B Chain B, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
pdb|2XSZ|C Chain C, The Dodecameric Human Ruvbl1:ruvbl2 Complex With Truncated
Domains Ii
Length = 367
Score = 37.7 bits (86), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 9/81 (11%)
Query: 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE--SQA 275
+ G E A++A +V +L + R +LL GPPG GKT LA A+A E S+
Sbjct: 53 LVGQENAREACGVIV-------ELIKSKKXAGRAVLLAGPPGTGKTALALAIAQELGSKV 105
Query: 276 TFFNVSASSLTSKWVGEGEKL 296
F S + S + + E L
Sbjct: 106 PFCPXVGSEVYSTEIKKTEVL 126
>pdb|3QMZ|A Chain A, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
pdb|3QMZ|B Chain B, Crystal Structure Of The Cytoplasmic Dynein Heavy Chain
Motor Domain
Length = 2486
Score = 37.0 bits (84), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 223 KAKQALMEMVILPA----KRRDLFTGLRRPARGLLLFGPPGNGKTML 265
+A + + +++P K +F L RG++L GPPG+GKTM+
Sbjct: 1018 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1064
>pdb|4AI6|A Chain A, Dynein Motor Domain - Adp Complex
pdb|4AI6|B Chain B, Dynein Motor Domain - Adp Complex
pdb|4AKG|A Chain A, Dynein Motor Domain - Atp Complex
pdb|4AKG|B Chain B, Dynein Motor Domain - Atp Complex
pdb|4AKH|A Chain A, Dynein Motor Domain - Amppnp Complex
pdb|4AKH|B Chain B, Dynein Motor Domain - Amppnp Complex
pdb|4AKI|A Chain A, Dynein Motor Domain - Luac Derivative
pdb|4AKI|B Chain B, Dynein Motor Domain - Luac Derivative
Length = 2695
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 4/47 (8%)
Query: 223 KAKQALMEMVILPA----KRRDLFTGLRRPARGLLLFGPPGNGKTML 265
+A + + +++P K +F L RG++L GPPG+GKTM+
Sbjct: 1237 EAHEVMRPDIVIPTIDTIKHEKIFYDLLNSKRGIILCGPPGSGKTMI 1283
>pdb|1IXR|C Chain C, Ruva-Ruvb Complex
Length = 312
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 31/58 (53%), Gaps = 7/58 (12%)
Query: 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272
++ G E+ KQ L + + AK R + P LLLFGPPG GKT LA +A E
Sbjct: 11 LDEYIGQERLKQKL-RVYLEAAKAR------KEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1IXS|B Chain B, Structure Of Ruvb Complexed With Ruva Domain Iii
Length = 318
Score = 36.2 bits (82), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 246 RRPARGLLLFGPPGNGKTMLAKAVASE 272
+ P LLLFGPPG GKT LA +A E
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|1HQC|A Chain A, Structure Of Ruvb From Thermus Thermophilus Hb8
pdb|1HQC|B Chain B, Structure Of Ruvb From Thermus Thermophilus Hb8
Length = 324
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 16/27 (59%), Positives = 18/27 (66%)
Query: 246 RRPARGLLLFGPPGNGKTMLAKAVASE 272
+ P LLLFGPPG GKT LA +A E
Sbjct: 35 KEPLEHLLLFGPPGLGKTTLAHVIAHE 61
>pdb|3MHV|C Chain C, Crystal Structure Of Vps4 And Vta1
Length = 117
Score = 35.4 bits (80), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 19/56 (33%), Positives = 28/56 (50%)
Query: 369 PDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424
PD R + + + L D L TEGYSGSD+ + ++A M PIR++
Sbjct: 3 PDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKI 58
>pdb|1G4A|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4A|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|E Chain E, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|F Chain F, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|K Chain K, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1G4B|L Chain L, Crystal Structures Of The Hslvu Peptidase-Atpase Complex
Reveal An Atp-Dependent Proteolysis Mechanism
pdb|1YYF|A Chain A, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
pdb|1YYF|B Chain B, Correction Of X-Ray Intensities From An Hslv-Hslu Co-
Crystal Containing Lattice Translocation Defects
Length = 443
Score = 35.4 bits (80), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L+ GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1DO2|A Chain A, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|B Chain B, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|C Chain C, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO2|D Chain D, Trigonal Crystal Form Of Heat Shock Locus U (Hslu) From
Escherichia Coli
pdb|1DO0|A Chain A, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|B Chain B, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|C Chain C, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|D Chain D, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|E Chain E, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
pdb|1DO0|F Chain F, Orthorhombic Crystal Form Of Heat Shock Locus U (Hslu)
From Escherichia Coli
Length = 442
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L+ GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 50 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 102
>pdb|1E94|E Chain E, Hslv-Hslu From E.Coli
pdb|1E94|F Chain F, Hslv-Hslu From E.Coli
pdb|1HT2|E Chain E, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|F Chain F, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|G Chain G, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT2|H Chain H, Nucleotide-dependent Conformational Changes In A
Protease-associated Atpase Hslu
pdb|1HT1|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|G Chain G, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HT1|I Chain I, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|E Chain E, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
pdb|1HQY|F Chain F, Nucleotide-Dependent Conformational Changes In A
Protease-Associated Atpase Hslu
Length = 449
Score = 35.4 bits (80), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L+ GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 57 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 109
>pdb|1G3I|A Chain A, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|B Chain B, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|C Chain C, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|D Chain D, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|E Chain E, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|F Chain F, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|S Chain S, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|T Chain T, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|U Chain U, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|V Chain V, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|W Chain W, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G3I|X Chain X, Crystal Structure Of The Hsluv Protease-Chaperone Complex
pdb|1G41|A Chain A, Crystal Structure Of Hslu Haemophilus Influenzae
pdb|1KYI|A Chain A, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|B Chain B, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|C Chain C, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|D Chain D, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|E Chain E, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|F Chain F, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|S Chain S, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|T Chain T, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|U Chain U, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|V Chain V, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|W Chain W, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
pdb|1KYI|X Chain X, Hsluv (h. Influenzae)-nlvs Vinyl Sulfone Inhibitor Complex
Length = 444
Score = 35.0 bits (79), Expect = 0.082, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L+ GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|1OFH|A Chain A, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|B Chain B, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFH|C Chain C, Asymmetric Complex Between Hslv And I-domain Deleted Hslu
(h. Influenzae)
pdb|1OFI|A Chain A, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|B Chain B, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
pdb|1OFI|C Chain C, Asymmetric Complex Between Hslv And I-Domain Deleted Hslu
(H. Influenzae)
Length = 310
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L+ GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 51 KNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|2V6Y|B Chain B, Structure Of The Mit Domain From A S. Solfataricus Vps4-
Like Atpase
Length = 83
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 36/61 (59%)
Query: 55 ELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKI 114
++A++ AV+A++ G VDDAI +YK A +L++ S T+ + + Y+++I
Sbjct: 9 DMARKYAILAVKADKEGKVDDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68
Query: 115 S 115
S
Sbjct: 69 S 69
>pdb|1NSF|A Chain A, D2 Hexamerization Domain Of N-Ethylmaleimide Sensitive
Factor (Nsf)
Length = 273
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282
R P +LL GPP +GKT LA +A ES F + +
Sbjct: 60 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 96
>pdb|1D2N|A Chain A, D2 Domain Of N-Ethylmaleimide-Sensitive Fusion Protein
Length = 272
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 21/37 (56%)
Query: 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282
R P +LL GPP +GKT LA +A ES F + +
Sbjct: 61 RTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICS 97
>pdb|1IN5|A Chain A, Thermogota Maritima Ruvb A156s Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG GKT LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN8|A Chain A, Thermotoga Maritima Ruvb T158v
Length = 334
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG GKT LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN4|A Chain A, Thermotoga Maritima Ruvb Holliday Junction Branch
Migration Motor
Length = 334
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG GKT LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IN7|A Chain A, Thermotoga Maritima Ruvb R170a
Length = 334
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG GKT LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1J7K|A Chain A, Thermotoga Maritima Ruvb P216g Mutant
Length = 334
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 17/37 (45%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG GKT LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1IM2|A Chain A, Hslu, Haemophilus Influenzae, Selenomethionine Variant
Length = 444
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 30/53 (56%), Gaps = 2/53 (3%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG-EGEKLVRTL 300
+ +L GP G GKT +A+ +A + A F V A+ T +VG E + ++R L
Sbjct: 51 KNILXIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGKEVDSIIRDL 103
>pdb|3U5Z|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|L Chain L, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|M Chain M, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|N Chain N, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U5Z|O Chain O, Structure Of T4 Bacteriophage Clamp Loader Bound To The T4
Clamp, Primer-Template Dna, And Atp Analog
pdb|3U60|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U60|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Open
Clamp, Dna And Atp Analog
pdb|3U61|B Chain B, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|C Chain C, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|D Chain D, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
pdb|3U61|E Chain E, Structure Of T4 Bacteriophage Clamp Loader Bound To Closed
Clamp, Dna And Atp Analog And Adp
Length = 324
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 36/72 (50%), Gaps = 3/72 (4%)
Query: 222 EKAKQALMEMVILPAKRRDLFTGLRRPAR--GLLLFGP-PGNGKTMLAKAVASESQATFF 278
+K + + ++ ILPA ++ F + + ++L P PG GKT +AKA+ + A
Sbjct: 18 QKYRPSTIDECILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMM 77
Query: 279 NVSASSLTSKWV 290
V+ S +V
Sbjct: 78 FVNGSDCKIDFV 89
>pdb|3R8F|A Chain A, Protein-Dna Complex
pdb|3R8F|B Chain B, Protein-Dna Complex
pdb|3R8F|C Chain C, Protein-Dna Complex
pdb|3R8F|D Chain D, Protein-Dna Complex
Length = 324
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 42/218 (19%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASS-----------LTSKWVGEGEKLVRT- 299
+ ++G G GKT L +A +E++ + V SS L + E + ++
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV 99
Query: 300 -LFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR 358
L ++D + R + EF F+ + I++ + PQ+L D V
Sbjct: 100 DLLLLDDVQFL------SGKERTQIEFFHIFNTLYLLEKQ--IILASDRHPQKL-DGVSD 150
Query: 359 RLVKR----IYVPLPDENVRRL-LLKHKLKGQAFSLPGGDLERL------VRETE----- 402
RLV R I V + +N R ++K KLK L ++ L VRE E
Sbjct: 151 RLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKNVREIEGKIKL 210
Query: 403 ----GYSGSDLQALCEEAAMMPIRELGTNILTVKANQL 436
G+ G + + E +M I E N VK +
Sbjct: 211 IKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDI 248
>pdb|2HCB|A Chain A, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|B Chain B, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|C Chain C, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
pdb|2HCB|D Chain D, Structure Of Amppcp-Bound Dnaa From Aquifex Aeolicus
Length = 323
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 52/218 (23%), Positives = 85/218 (38%), Gaps = 42/218 (19%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASS-----------LTSKWVGEGEKLVRT- 299
+ ++G G GKT L +A +E++ + V SS L + E + ++
Sbjct: 39 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAMVEHLKKGTINEFRNMYKSV 98
Query: 300 -LFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR 358
L ++D + R + EF F+ + I++ + PQ+L D V
Sbjct: 99 DLLLLDDVQFL------SGKERTQIEFFHIFNTLYLLEKQ--IILASDRHPQKL-DGVSD 149
Query: 359 RLVKR----IYVPLPDENVRRL-LLKHKLKGQAFSLPGGDLERL------VRETE----- 402
RLV R I V + +N R ++K KLK L ++ L VRE E
Sbjct: 150 RLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKNVREIEGKIKL 209
Query: 403 ----GYSGSDLQALCEEAAMMPIRELGTNILTVKANQL 436
G+ G + + E +M I E N VK +
Sbjct: 210 IKLKGFEGLERKERKERDKLMQIVEFVANYYAVKVEDI 247
>pdb|1IN6|A Chain A, Thermotoga Maritima Ruvb K64r Mutant
Length = 334
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 20/37 (54%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
+LL GPPG G+T LA +ASE Q S L +
Sbjct: 54 VLLAGPPGLGRTTLAHIIASELQTNIHVTSGPVLVKQ 90
>pdb|1UM8|A Chain A, Crystal Structure Of Helicobacter Pylori Clpx
Length = 376
Score = 33.1 bits (74), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 26/42 (61%), Gaps = 1/42 (2%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT-SKWVGE 292
+LL GP G+GKT++A+ +A A+SLT + +VGE
Sbjct: 75 ILLIGPTGSGKTLMAQTLAKHLDIPIAISDATSLTEAGYVGE 116
>pdb|1SXJ|A Chain A, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 516
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 21/39 (53%)
Query: 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288
R +L+GPPG GKT A VA E +AS + SK
Sbjct: 78 RAAMLYGPPGIGKTTAAHLVAQELGYDILEQNASDVRSK 116
>pdb|2V6Y|A Chain A, Structure Of The Mit Domain From A S. Solfataricus Vps4-
Like Atpase
Length = 83
Score = 32.3 bits (72), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 36/61 (59%)
Query: 55 ELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKI 114
++A++ AV+A++ G V+DAI +YK A +L++ S T+ + + Y+++I
Sbjct: 9 DMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRI 68
Query: 115 S 115
S
Sbjct: 69 S 69
>pdb|2DVW|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|B Chain B, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|D Chain D, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|3AJI|B Chain B, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|D Chain D, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 83
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 21/31 (67%)
Query: 393 DLERLVRETEGYSGSDLQALCEEAAMMPIRE 423
DLE V + SG+D+ ++C+E+ M+ +RE
Sbjct: 24 DLEDYVARPDKISGADINSICQESGMLAVRE 54
>pdb|1RKB|A Chain A, The Structure Of Adrenal Gland Protein Ad-004
Length = 173
Score = 32.3 bits (72), Expect = 0.63, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281
+LL G PG GKT L K +AS+S + NV
Sbjct: 7 ILLTGTPGVGKTTLGKELASKSGLKYINVG 36
>pdb|3IIJ|A Chain A, The Structure Of Hcinap-Adp Complex At 1.76 Angstroms
Resolution.
pdb|3IIK|A Chain A, The Structure Of Hcinap-So4 Complex At 1.95 Angstroms
Resolution
pdb|3IIL|A Chain A, The Structure Of Hcinap-Mgadp-Pi Complex At 2.0 Angstroms
Resolution
pdb|3IIM|A Chain A, The Structure Of Hcinap-Dadp Complex At 2.0 Angstroms
Resolution
Length = 180
Score = 32.0 bits (71), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281
+LL G PG GKT L K +AS+S + NV
Sbjct: 14 ILLTGTPGVGKTTLGKELASKSGLKYINVG 43
>pdb|1SXJ|C Chain C, Crystal Structure Of The Eukaryotic Clamp Loader
(Replication Factor C, Rfc) Bound To The Dna Sliding
Clamp (Proliferating Cell Nuclear Antigen, Pcna)
Length = 340
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 66/170 (38%), Gaps = 32/170 (18%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRM 311
LL +GPPG GKT A+A E ++ L + G +VR I STR
Sbjct: 49 LLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASD-DRGIDVVRN--QIKDFASTRQ 105
Query: 312 ANENDASRRLKSEFLIQFDGVTS-------------NPNDLVIVMGATNKPQELDDAVLR 358
S+ K L + D +T+ N V+ N +L A+L
Sbjct: 106 I----FSKGFKLIILDEADAMTNAAQNALRRVIERYTKNTRFCVLA--NYAHKLTPALLS 159
Query: 359 RLVKRIYVPLPDENVRR----LLLKHKLK------GQAFSLPGGDLERLV 398
+ + + PLP E + R +L+ KLK L GD+ R++
Sbjct: 160 QCTRFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNGDMRRVL 209
>pdb|1QVR|A Chain A, Crystal Structure Analysis Of Clpb
pdb|1QVR|B Chain B, Crystal Structure Analysis Of Clpb
pdb|1QVR|C Chain C, Crystal Structure Analysis Of Clpb
Length = 854
Score = 30.4 bits (67), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFN 279
RP L GP G GKT LAK +A AT F+
Sbjct: 586 RPIGSFLFLGPTGVGKTELAKTLA----ATLFD 614
>pdb|3K1J|A Chain A, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
pdb|3K1J|B Chain B, Crystal Structure Of Lon Protease From Thermococcus
Onnurineus Na1
Length = 604
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 12/21 (57%), Positives = 16/21 (76%)
Query: 250 RGLLLFGPPGNGKTMLAKAVA 270
R +LL G PG GK+ML +A+A
Sbjct: 61 RHVLLIGEPGTGKSMLGQAMA 81
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 246 RRPARGLLLFGPPGNGKTMLAKAVA 270
+RP + GP G GKT LA+A+A
Sbjct: 518 KRPIGSFIFLGPTGVGKTELARALA 542
>pdb|4FCV|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCV|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|C Chain C, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FCW|F Chain F, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 311
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/39 (41%), Positives = 20/39 (51%), Gaps = 4/39 (10%)
Query: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285
RP L GP G GKT LAK +A AT F+ + +
Sbjct: 45 RPIGSFLFLGPTGVGKTELAKTLA----ATLFDTEEAXI 79
>pdb|1L8Q|A Chain A, Crystal Structure Of Dna Replication Initiation Factor
Length = 324
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 51/218 (23%), Positives = 83/218 (38%), Gaps = 42/218 (19%)
Query: 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASS-----------LTSKWVGEGEKLVRT- 299
+ ++G G GKT L +A +E++ + V SS L + E ++
Sbjct: 40 IFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAXVEHLKKGTINEFRNXYKSV 99
Query: 300 -LFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR 358
L ++D + R + EF F+ + I++ + PQ+L D V
Sbjct: 100 DLLLLDDVQFL------SGKERTQIEFFHIFNTLYLLEKQ--IILASDRHPQKL-DGVSD 150
Query: 359 RLVKR----IYVPLPDENVRRL-LLKHKLKGQAFSLPGGDLERL------VRETE----- 402
RLV R I V + +N R ++K KLK L ++ L VRE E
Sbjct: 151 RLVSRFEGGILVEIELDNKTRFKIIKEKLKEFNLELRKEVIDYLLENTKNVREIEGKIKL 210
Query: 403 ----GYSGSDLQALCEEAAMMPIRELGTNILTVKANQL 436
G+ G + + E + I E N VK +
Sbjct: 211 IKLKGFEGLERKERKERDKLXQIVEFVANYYAVKVEDI 248
>pdb|4FCT|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|A Chain A, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|B Chain B, Crystal Structure Of The C-Terminal Domain Of Clpb
pdb|4FD2|D Chain D, Crystal Structure Of The C-Terminal Domain Of Clpb
Length = 308
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
Query: 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFN 279
RP L GP G GKT LAK +A AT F+
Sbjct: 42 RPIGSFLFLGPTGVGKTELAKTLA----ATLFD 70
>pdb|2KRK|A Chain A, Solution Nmr Structure Of 26s Protease Regulatory Subunit
8 From H.Sapiens, Northeast Structural Genomics
Consortium Target Target Hr3102a
Length = 86
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 41/84 (48%), Gaps = 14/84 (16%)
Query: 369 PDENVRRLLLKHKLKGQAFSLPGG-DLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427
P+E R +LK + + +L G +L ++ G SG++++ +C EA M +RE +
Sbjct: 11 PNEEARLDILK--IHSRKMNLTRGINLRKIAELMPGASGAEVKGVCTEAGMYALRERRVH 68
Query: 428 ILTVKANQLRPLRYEDFQKAMAVI 451
+ EDF+ A+A +
Sbjct: 69 VTQ-----------EDFEMAVAKV 81
>pdb|3ZUH|A Chain A, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|B Chain B, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|C Chain C, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|D Chain D, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|E Chain E, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
pdb|3ZUH|F Chain F, Negative Stain Em Map Of The Aaa Protein Cbbx, A Red-Type
Rubisco Activase From R. Sphaeroides
Length = 289
Score = 28.9 bits (63), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 34/148 (22%), Positives = 63/148 (42%), Gaps = 22/148 (14%)
Query: 217 DVAGLEKAKQALME---MVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS-- 271
++ GL+ K + E ++++ R+ L P + G PG GKT +A +A
Sbjct: 25 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 84
Query: 272 -----ESQATFFNVSASSLTSKWVGEG-----EKLVR----TLFMIDSIMSTRMANENDA 317
+ +V+ L +++G E L R LF+ ++ R NE D
Sbjct: 85 HRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDY 144
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGA 345
+ E L+Q + +N +DLV+++
Sbjct: 145 GQE-AIEILLQV--MENNRDDLVVILAG 169
>pdb|3SYL|A Chain A, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
pdb|3SYL|B Chain B, Crystal Structure Of The Aaa+ Protein Cbbx, Native
Structure
Length = 309
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 34/146 (23%), Positives = 63/146 (43%), Gaps = 22/146 (15%)
Query: 217 DVAGLEKAKQALME---MVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS-- 271
++ GL+ K + E ++++ R+ L P + G PG GKT +A +A
Sbjct: 32 ELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLL 91
Query: 272 -----ESQATFFNVSASSLTSKWVGE-----GEKLVR----TLFMIDSIMSTRMANENDA 317
+ +V+ L +++G E L R LF+ ++ R NE D
Sbjct: 92 HRLGYVRKGHLVSVTRDDLVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDY 151
Query: 318 SRRLKSEFLIQFDGVTSNPNDLVIVM 343
+ E L+Q + +N +DLV+++
Sbjct: 152 GQE-AIEILLQV--MENNRDDLVVIL 174
>pdb|1DQ3|A Chain A, Crystal Structure Of An Archaeal Intein-Encoded Homing
Endonuclease Pi-Pfui
Length = 454
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 38/73 (52%), Gaps = 6/73 (8%)
Query: 316 DASRRLKSEFLIQFDGVTSNP----NDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDE 371
+A + SE+ ++F S ND I +G + + AVL ++++++Y DE
Sbjct: 345 NAFKEWASEYGVEFKTNGSQTIAIINDERISLGQWHTRNRVSKAVLVKMLRKLYEATKDE 404
Query: 372 NVRRLLLKHKLKG 384
V+R+L H ++G
Sbjct: 405 EVKRML--HLIEG 415
>pdb|1XZP|A Chain A, Structure Of The Gtp-Binding Protein Trme From Thermotoga
Maritima
pdb|1XZQ|A Chain A, Structure Of The Gtp-binding Protein Trme From Thermotoga
Maritima Complexed With 5-formyl-thf
Length = 482
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 44/163 (26%), Positives = 68/163 (41%), Gaps = 33/163 (20%)
Query: 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA 275
E V LE+ K+ L E + K+ D L R R +++ G P GK+ L + +E +A
Sbjct: 215 EVVTRLERIKEKLTEEL----KKADAGILLNRGLR-MVIVGKPNVGKSTLLNRLLNEDRA 269
Query: 276 TFFNVSASSLTSKWVGEGEKLVR-TLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 334
++ T++ V E ++R LF I + GV S
Sbjct: 270 IVTDIPG---TTRDVISEEIVIRGILFRI-----------------------VDTAGVRS 303
Query: 335 NPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLL 377
NDLV +G QE++ A + V PL DE R++L
Sbjct: 304 ETNDLVERLGIERTLQEIEKADIVLFVLDASSPL-DEEDRKIL 345
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.313 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,670,715
Number of Sequences: 62578
Number of extensions: 475595
Number of successful extensions: 1379
Number of sequences better than 100.0: 88
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 20
Number of HSP's that attempted gapping in prelim test: 1201
Number of HSP's gapped (non-prelim): 102
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 53 (25.0 bits)