Query 012000
Match_columns 473
No_of_seqs 452 out of 2774
Neff 8.0
Searched_HMMs 46136
Date Fri Mar 29 07:33:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012000.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012000hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0739 AAA+-type ATPase [Post 100.0 9.1E-75 2E-79 544.1 26.2 384 52-473 5-438 (439)
2 KOG0738 AAA+-type ATPase [Post 100.0 5.7E-58 1.2E-62 444.5 34.0 281 191-472 187-490 (491)
3 KOG0730 AAA+-type ATPase [Post 100.0 2.9E-48 6.2E-53 399.7 21.4 254 204-469 422-692 (693)
4 COG1222 RPT1 ATP-dependent 26S 100.0 4E-47 8.7E-52 367.1 19.6 235 205-453 140-394 (406)
5 KOG0733 Nuclear AAA ATPase (VC 100.0 8.4E-46 1.8E-50 376.3 21.8 265 205-471 500-789 (802)
6 KOG0740 AAA+-type ATPase [Post 100.0 5.8E-46 1.3E-50 373.5 20.3 283 190-472 127-425 (428)
7 KOG0737 AAA+-type ATPase [Post 100.0 1.5E-44 3.2E-49 351.3 19.0 261 211-472 87-382 (386)
8 KOG0736 Peroxisome assembly fa 100.0 8E-44 1.7E-48 369.9 21.4 264 207-471 663-952 (953)
9 KOG0733 Nuclear AAA ATPase (VC 100.0 6.2E-42 1.3E-46 348.2 16.2 261 209-471 183-515 (802)
10 TIGR01243 CDC48 AAA family ATP 100.0 2.9E-38 6.2E-43 349.1 24.5 263 207-472 444-731 (733)
11 COG0464 SpoVK ATPases of the A 100.0 1E-36 2.2E-41 323.5 23.0 244 205-466 231-492 (494)
12 KOG0734 AAA+-type ATPase conta 100.0 3.8E-37 8.2E-42 309.0 15.6 227 211-452 299-542 (752)
13 COG1223 Predicted ATPase (AAA+ 100.0 9.3E-36 2E-40 276.2 17.5 228 210-454 115-358 (368)
14 PTZ00454 26S protease regulato 100.0 2.8E-35 6E-40 301.1 22.1 235 206-454 135-389 (398)
15 KOG0727 26S proteasome regulat 100.0 8.6E-36 1.9E-40 275.3 16.2 230 208-451 147-396 (408)
16 KOG0728 26S proteasome regulat 100.0 1.9E-35 4.1E-40 272.8 17.2 238 205-456 136-393 (404)
17 CHL00195 ycf46 Ycf46; Provisio 100.0 7.2E-35 1.6E-39 304.0 23.3 242 211-470 223-484 (489)
18 KOG0731 AAA+-type ATPase conta 100.0 2.4E-35 5.3E-40 312.8 20.0 232 209-454 304-556 (774)
19 KOG0735 AAA+-type ATPase [Post 100.0 4.6E-35 9.9E-40 302.2 19.8 247 211-462 662-927 (952)
20 KOG0726 26S proteasome regulat 100.0 5E-36 1.1E-40 281.8 11.3 234 205-452 174-427 (440)
21 KOG0652 26S proteasome regulat 100.0 5.2E-35 1.1E-39 271.3 15.9 244 195-452 150-413 (424)
22 PRK03992 proteasome-activating 100.0 3.2E-34 7E-39 294.3 22.5 240 205-458 120-379 (389)
23 KOG0729 26S proteasome regulat 100.0 5.7E-34 1.2E-38 265.1 14.5 233 206-452 167-419 (435)
24 PTZ00361 26 proteosome regulat 100.0 2.8E-33 6.2E-38 288.0 20.0 233 206-452 173-425 (438)
25 COG0465 HflB ATP-dependent Zn 100.0 2.8E-32 6E-37 285.2 16.5 228 210-452 144-391 (596)
26 TIGR01241 FtsH_fam ATP-depende 100.0 1.6E-31 3.5E-36 283.2 22.4 231 208-453 47-297 (495)
27 TIGR01242 26Sp45 26S proteasom 100.0 4.6E-31 9.9E-36 269.6 20.9 233 205-451 111-363 (364)
28 TIGR03689 pup_AAA proteasome A 100.0 1.3E-30 2.9E-35 271.7 23.0 239 202-450 168-477 (512)
29 KOG0730 AAA+-type ATPase [Post 100.0 1.7E-31 3.7E-36 275.9 14.9 242 211-472 180-439 (693)
30 KOG0732 AAA+-type ATPase conta 100.0 6.6E-31 1.4E-35 285.7 16.3 248 208-457 257-531 (1080)
31 CHL00176 ftsH cell division pr 100.0 1.6E-29 3.5E-34 271.6 22.2 227 210-451 177-423 (638)
32 KOG0741 AAA+-type ATPase [Post 100.0 2.5E-30 5.4E-35 259.8 11.3 254 210-465 213-506 (744)
33 TIGR01243 CDC48 AAA family ATP 100.0 2.5E-29 5.3E-34 278.1 20.4 247 210-459 172-443 (733)
34 KOG0651 26S proteasome regulat 100.0 1.7E-29 3.6E-34 240.1 12.1 233 206-452 122-374 (388)
35 PRK10733 hflB ATP-dependent me 100.0 3.8E-28 8.2E-33 263.6 20.2 229 211-454 147-395 (644)
36 CHL00206 ycf2 Ycf2; Provisiona 100.0 3.9E-28 8.4E-33 274.0 18.7 194 246-453 1627-1879(2281)
37 PLN00020 ribulose bisphosphate 99.9 1.5E-25 3.3E-30 220.9 16.7 209 211-424 110-355 (413)
38 CHL00181 cbbX CbbX; Provisiona 99.9 2E-21 4.4E-26 191.4 19.4 227 215-446 22-281 (287)
39 TIGR02881 spore_V_K stage V sp 99.9 8.4E-22 1.8E-26 192.3 15.6 208 214-425 4-243 (261)
40 PF05496 RuvB_N: Holliday junc 99.9 3.7E-22 8E-27 185.4 9.5 192 210-417 18-226 (233)
41 KOG0743 AAA+-type ATPase [Post 99.9 7E-21 1.5E-25 191.0 16.6 197 212-413 197-413 (457)
42 TIGR02880 cbbX_cfxQ probable R 99.9 1.2E-20 2.6E-25 185.9 17.5 226 217-447 23-281 (284)
43 KOG0744 AAA+-type ATPase [Post 99.9 2E-21 4.4E-26 186.0 10.8 223 213-450 139-413 (423)
44 PRK00080 ruvB Holliday junctio 99.8 3.3E-19 7.2E-24 179.7 24.3 236 208-470 17-272 (328)
45 COG2255 RuvB Holliday junction 99.8 2E-19 4.2E-24 170.2 19.0 235 209-470 19-273 (332)
46 PRK14956 DNA polymerase III su 99.8 2.1E-19 4.5E-24 185.4 17.6 188 206-418 8-228 (484)
47 PRK07003 DNA polymerase III su 99.8 4.2E-19 9.1E-24 189.5 19.4 187 206-419 6-227 (830)
48 TIGR00635 ruvB Holliday juncti 99.8 1E-18 2.2E-23 174.4 20.8 211 214-451 2-229 (305)
49 PRK12323 DNA polymerase III su 99.8 5.1E-19 1.1E-23 186.8 18.1 186 206-418 6-231 (700)
50 KOG0742 AAA+-type ATPase [Post 99.8 5.8E-19 1.3E-23 173.6 15.9 202 211-420 350-592 (630)
51 COG2256 MGS1 ATPase related to 99.8 1.2E-18 2.6E-23 172.2 17.7 210 208-458 16-245 (436)
52 TIGR02902 spore_lonB ATP-depen 99.8 7.8E-19 1.7E-23 187.0 17.6 214 203-450 52-331 (531)
53 PRK14962 DNA polymerase III su 99.8 1.1E-18 2.4E-23 182.5 18.1 187 206-417 4-223 (472)
54 PRK14960 DNA polymerase III su 99.8 1.3E-18 2.7E-23 184.2 17.5 188 206-418 5-225 (702)
55 PRK14961 DNA polymerase III su 99.8 1.9E-18 4.2E-23 176.3 17.4 188 206-418 6-226 (363)
56 PRK14958 DNA polymerase III su 99.8 1.7E-18 3.6E-23 183.0 16.1 187 206-419 6-227 (509)
57 PRK14949 DNA polymerase III su 99.8 6.4E-18 1.4E-22 183.7 20.9 187 206-417 6-225 (944)
58 PRK07994 DNA polymerase III su 99.8 5.8E-18 1.3E-22 181.4 18.0 188 206-418 6-226 (647)
59 PRK14964 DNA polymerase III su 99.8 6.5E-18 1.4E-22 176.2 17.4 187 206-419 3-224 (491)
60 KOG0735 AAA+-type ATPase [Post 99.8 5.3E-18 1.1E-22 176.6 16.4 223 216-455 408-652 (952)
61 PRK08691 DNA polymerase III su 99.8 6.8E-18 1.5E-22 180.2 17.7 189 206-419 6-227 (709)
62 PRK06645 DNA polymerase III su 99.8 1.6E-17 3.6E-22 174.4 19.9 187 206-419 11-236 (507)
63 KOG0989 Replication factor C, 99.8 3.4E-17 7.5E-22 156.6 19.9 187 205-417 25-235 (346)
64 PRK14951 DNA polymerase III su 99.8 1.1E-17 2.5E-22 178.8 17.5 187 206-419 6-232 (618)
65 PLN03025 replication factor C 99.8 2.7E-17 5.8E-22 165.2 18.6 183 206-414 3-202 (319)
66 PRK14963 DNA polymerase III su 99.8 2.6E-17 5.6E-22 173.6 18.6 188 205-417 3-222 (504)
67 PRK04195 replication factor C 99.8 2.8E-17 6.1E-22 173.9 18.7 182 206-406 4-197 (482)
68 PRK14957 DNA polymerase III su 99.8 2.3E-17 5E-22 174.4 17.5 189 206-419 6-227 (546)
69 KOG0736 Peroxisome assembly fa 99.7 2E-17 4.3E-22 173.8 15.9 205 249-454 431-656 (953)
70 PRK14969 DNA polymerase III su 99.7 3E-17 6.5E-22 174.5 17.3 187 206-419 6-227 (527)
71 PRK13342 recombination factor 99.7 8.1E-17 1.8E-21 167.3 19.6 185 206-418 2-202 (413)
72 PRK05563 DNA polymerase III su 99.7 5.9E-17 1.3E-21 173.4 19.1 189 206-419 6-227 (559)
73 PRK14952 DNA polymerase III su 99.7 7.8E-17 1.7E-21 171.8 18.9 186 207-419 4-226 (584)
74 PRK14965 DNA polymerase III su 99.7 4.5E-17 9.7E-22 175.0 17.2 189 206-419 6-227 (576)
75 PRK07133 DNA polymerase III su 99.7 5.9E-17 1.3E-21 174.6 17.3 189 205-418 7-225 (725)
76 PRK07764 DNA polymerase III su 99.7 1.1E-16 2.4E-21 176.7 19.1 185 206-417 5-226 (824)
77 PRK05896 DNA polymerase III su 99.7 9.7E-17 2.1E-21 169.9 17.8 187 205-418 5-226 (605)
78 PRK14959 DNA polymerase III su 99.7 1.2E-16 2.6E-21 170.0 18.4 185 205-416 5-224 (624)
79 PRK08451 DNA polymerase III su 99.7 1.1E-16 2.4E-21 168.4 17.6 190 206-420 4-226 (535)
80 TIGR02397 dnaX_nterm DNA polym 99.7 1.2E-16 2.6E-21 162.7 16.9 189 206-419 4-225 (355)
81 TIGR00763 lon ATP-dependent pr 99.7 2.6E-16 5.7E-21 175.1 20.0 222 217-449 321-584 (775)
82 TIGR02639 ClpA ATP-dependent C 99.7 1.4E-16 3.1E-21 176.3 17.6 238 204-467 170-449 (731)
83 PRK14955 DNA polymerase III su 99.7 4.9E-16 1.1E-20 160.5 19.4 189 206-419 6-235 (397)
84 PRK12402 replication factor C 99.7 2.6E-16 5.6E-21 159.1 17.1 183 207-415 6-229 (337)
85 PRK14953 DNA polymerase III su 99.7 2.4E-16 5.2E-21 165.7 17.3 189 206-419 6-227 (486)
86 PRK06647 DNA polymerase III su 99.7 2.3E-16 5E-21 168.3 17.3 189 206-419 6-227 (563)
87 COG2812 DnaX DNA polymerase II 99.7 1E-16 2.2E-21 166.8 13.6 191 205-420 5-228 (515)
88 PRK06305 DNA polymerase III su 99.7 9.9E-16 2.1E-20 160.1 20.6 187 206-417 7-227 (451)
89 PF00004 AAA: ATPase family as 99.7 5.5E-17 1.2E-21 140.8 9.3 116 252-368 1-132 (132)
90 PRK09111 DNA polymerase III su 99.7 5.9E-16 1.3E-20 166.0 17.9 187 206-419 14-240 (598)
91 TIGR00362 DnaA chromosomal rep 99.7 2.2E-15 4.7E-20 156.4 21.3 210 211-451 105-337 (405)
92 PRK06893 DNA replication initi 99.7 1.2E-15 2.6E-20 146.0 17.6 210 210-449 10-228 (229)
93 PRK14954 DNA polymerase III su 99.7 1.3E-15 2.7E-20 163.7 19.2 189 206-419 6-235 (620)
94 PRK14970 DNA polymerase III su 99.7 1.4E-15 3E-20 155.9 18.6 189 206-419 7-216 (367)
95 PRK13341 recombination factor 99.7 8.6E-16 1.9E-20 167.8 17.9 186 205-418 17-223 (725)
96 KOG2028 ATPase related to the 99.7 4.8E-16 1E-20 151.4 13.9 221 205-457 127-374 (554)
97 PF05673 DUF815: Protein of un 99.7 1.7E-15 3.6E-20 142.9 17.1 194 207-415 18-244 (249)
98 PHA02544 44 clamp loader, smal 99.7 1.5E-15 3.2E-20 152.4 17.8 175 206-403 11-201 (316)
99 PRK00440 rfc replication facto 99.7 2.1E-15 4.5E-20 151.2 18.8 187 206-418 7-209 (319)
100 PRK08084 DNA replication initi 99.7 6.7E-15 1.5E-19 141.4 20.7 206 211-449 17-234 (235)
101 PRK08903 DnaA regulatory inact 99.7 5.5E-15 1.2E-19 141.2 19.7 204 210-449 12-224 (227)
102 PRK00149 dnaA chromosomal repl 99.7 3.7E-15 7.9E-20 156.6 19.1 210 211-451 117-349 (450)
103 PRK06620 hypothetical protein; 99.7 1E-14 2.2E-19 137.9 19.9 196 210-448 10-213 (214)
104 PRK14950 DNA polymerase III su 99.6 3.4E-15 7.3E-20 161.2 17.9 187 206-417 6-226 (585)
105 PRK14948 DNA polymerase III su 99.6 5.5E-15 1.2E-19 159.5 19.3 186 206-416 6-226 (620)
106 TIGR03420 DnaA_homol_Hda DnaA 99.6 8E-15 1.7E-19 139.7 17.1 204 212-448 11-225 (226)
107 PRK14971 DNA polymerase III su 99.6 8.6E-15 1.9E-19 158.0 18.7 186 207-419 8-229 (614)
108 PRK12422 chromosomal replicati 99.6 1.8E-14 3.9E-19 150.2 20.3 236 210-472 105-367 (445)
109 TIGR03345 VI_ClpV1 type VI sec 99.6 5.2E-15 1.1E-19 165.2 16.7 197 204-419 175-409 (852)
110 PRK07940 DNA polymerase III su 99.6 1E-14 2.2E-19 149.5 17.2 178 214-412 3-214 (394)
111 PRK14086 dnaA chromosomal repl 99.6 4E-14 8.7E-19 150.2 21.3 180 250-451 315-515 (617)
112 PRK08727 hypothetical protein; 99.6 4.6E-14 1E-18 135.4 19.7 207 211-450 14-230 (233)
113 PRK05642 DNA replication initi 99.6 4.9E-14 1.1E-18 135.2 18.4 179 249-449 45-233 (234)
114 PRK14088 dnaA chromosomal repl 99.6 3.2E-14 7E-19 148.5 18.1 210 210-451 99-332 (440)
115 TIGR02903 spore_lon_C ATP-depe 99.6 6.2E-14 1.3E-18 151.8 19.6 225 202-452 140-431 (615)
116 COG0464 SpoVK ATPases of the A 99.6 2.1E-14 4.5E-19 152.8 14.8 211 234-454 2-229 (494)
117 cd02679 MIT_spastin MIT: domai 99.6 1.1E-14 2.4E-19 113.7 9.3 79 50-128 1-79 (79)
118 PRK05342 clpX ATP-dependent pr 99.6 4.2E-14 9E-19 145.7 16.3 208 218-425 73-383 (412)
119 PRK09087 hypothetical protein; 99.6 4.9E-14 1.1E-18 134.4 15.4 199 211-451 16-222 (226)
120 PRK11034 clpA ATP-dependent Cl 99.6 4.7E-14 1E-18 155.0 16.7 222 205-452 175-434 (758)
121 COG0466 Lon ATP-dependent Lon 99.6 5.1E-14 1.1E-18 148.2 15.4 216 216-450 323-583 (782)
122 PRK14087 dnaA chromosomal repl 99.6 2.4E-13 5.1E-18 142.2 19.9 184 249-451 141-348 (450)
123 PRK10865 protein disaggregatio 99.5 2.1E-14 4.6E-19 160.8 12.6 183 204-405 166-381 (857)
124 TIGR02928 orc1/cdc6 family rep 99.5 2.1E-13 4.6E-18 139.4 18.9 213 213-451 12-274 (365)
125 PRK13407 bchI magnesium chelat 99.5 2.4E-13 5.2E-18 136.2 18.2 208 210-449 2-304 (334)
126 PF00308 Bac_DnaA: Bacterial d 99.5 2.6E-13 5.7E-18 128.8 17.6 190 211-419 3-215 (219)
127 cd02683 MIT_1 MIT: domain cont 99.5 2.1E-14 4.4E-19 112.6 7.6 71 54-124 3-73 (77)
128 KOG2004 Mitochondrial ATP-depe 99.5 3.8E-12 8.2E-17 133.6 25.6 200 215-425 410-654 (906)
129 cd02677 MIT_SNX15 MIT: domain 99.5 2.4E-14 5.2E-19 111.4 6.9 69 52-120 1-69 (75)
130 cd02684 MIT_2 MIT: domain cont 99.5 3.1E-14 6.7E-19 111.0 7.4 69 54-122 3-71 (75)
131 TIGR03346 chaperone_ClpB ATP-d 99.5 1.3E-13 2.7E-18 155.1 15.4 196 204-418 161-394 (852)
132 PRK00411 cdc6 cell division co 99.5 1E-12 2.2E-17 135.9 19.9 215 213-453 27-284 (394)
133 COG2607 Predicted ATPase (AAA+ 99.5 8.3E-13 1.8E-17 122.7 16.7 195 207-416 51-277 (287)
134 CHL00095 clpC Clp protease ATP 99.5 1.2E-13 2.7E-18 154.7 13.5 196 204-418 167-399 (821)
135 PRK11034 clpA ATP-dependent Cl 99.5 5.2E-13 1.1E-17 146.8 18.0 196 217-423 459-718 (758)
136 PRK10787 DNA-binding ATP-depen 99.5 6.7E-13 1.5E-17 146.9 18.8 218 217-450 323-581 (784)
137 cd02681 MIT_calpain7_1 MIT: do 99.5 6.5E-14 1.4E-18 108.9 7.5 68 54-121 3-71 (76)
138 TIGR00382 clpX endopeptidase C 99.5 8.7E-13 1.9E-17 135.3 16.4 208 218-425 79-389 (413)
139 smart00745 MIT Microtubule Int 99.5 1.2E-13 2.6E-18 109.0 7.7 74 51-124 2-75 (77)
140 COG0593 DnaA ATPase involved i 99.4 5.9E-12 1.3E-16 127.9 20.0 192 211-421 82-295 (408)
141 PF04212 MIT: MIT (microtubule 99.4 1.5E-13 3.3E-18 106.0 6.5 68 53-120 1-68 (69)
142 CHL00081 chlI Mg-protoporyphyr 99.4 4.8E-12 1E-16 127.2 19.0 152 211-382 12-232 (350)
143 TIGR00390 hslU ATP-dependent p 99.4 1.4E-12 3E-17 132.3 14.8 230 217-451 13-430 (441)
144 PTZ00112 origin recognition co 99.4 6E-12 1.3E-16 135.9 20.0 206 216-452 755-1007(1164)
145 KOG0991 Replication factor C, 99.4 6.4E-13 1.4E-17 122.7 10.9 185 206-415 17-218 (333)
146 TIGR02639 ClpA ATP-dependent C 99.4 2.2E-12 4.8E-17 143.0 17.2 196 217-423 455-714 (731)
147 PRK05564 DNA polymerase III su 99.4 2.2E-11 4.8E-16 122.1 21.9 167 214-408 2-187 (313)
148 KOG1969 DNA replication checkp 99.4 2.5E-12 5.5E-17 135.3 15.3 202 206-421 261-516 (877)
149 TIGR02640 gas_vesic_GvpN gas v 99.4 6.1E-12 1.3E-16 122.9 17.1 125 249-382 21-198 (262)
150 cd02678 MIT_VPS4 MIT: domain c 99.4 4.7E-13 1E-17 104.9 7.3 71 52-122 1-71 (75)
151 PRK07471 DNA polymerase III su 99.4 3.4E-11 7.4E-16 122.6 22.4 176 210-414 13-240 (365)
152 PRK09112 DNA polymerase III su 99.4 8.6E-12 1.9E-16 126.3 17.9 180 210-416 17-244 (351)
153 PRK05201 hslU ATP-dependent pr 99.4 2.5E-12 5.4E-17 130.5 13.8 230 217-451 16-432 (443)
154 TIGR02030 BchI-ChlI magnesium 99.4 2.2E-11 4.9E-16 122.3 18.4 206 214-450 2-308 (337)
155 cd02682 MIT_AAA_Arch MIT: doma 99.4 1.4E-12 3.1E-17 100.5 7.4 68 54-121 3-70 (75)
156 COG1224 TIP49 DNA helicase TIP 99.4 4.6E-11 1E-15 116.8 19.6 116 341-470 322-449 (450)
157 TIGR01650 PD_CobS cobaltochela 99.4 8.7E-11 1.9E-15 116.4 21.9 128 249-384 64-235 (327)
158 PRK07399 DNA polymerase III su 99.3 1E-10 2.3E-15 116.8 19.8 173 214-415 2-224 (314)
159 TIGR02442 Cob-chelat-sub cobal 99.3 6.7E-11 1.5E-15 129.0 19.5 207 214-451 2-304 (633)
160 cd02656 MIT MIT: domain contai 99.3 5E-12 1.1E-16 99.2 7.6 70 53-122 2-71 (75)
161 TIGR03346 chaperone_ClpB ATP-d 99.3 6.3E-11 1.4E-15 133.5 18.7 198 215-423 564-828 (852)
162 PRK04132 replication factor C 99.3 2.4E-11 5.3E-16 133.9 14.1 185 207-417 534-736 (846)
163 cd02680 MIT_calpain7_2 MIT: do 99.3 8.7E-12 1.9E-16 96.4 7.3 64 54-121 3-70 (75)
164 TIGR03345 VI_ClpV1 type VI sec 99.3 5.7E-11 1.2E-15 133.0 17.1 196 216-423 566-833 (852)
165 TIGR00678 holB DNA polymerase 99.3 1E-10 2.3E-15 108.4 15.3 139 247-404 12-184 (188)
166 PF01078 Mg_chelatase: Magnesi 99.3 1.5E-11 3.3E-16 113.8 9.4 137 214-372 1-205 (206)
167 KOG2035 Replication factor C, 99.3 1.7E-10 3.6E-15 109.5 16.3 178 207-409 4-226 (351)
168 PRK10865 protein disaggregatio 99.3 1.4E-10 3E-15 130.3 18.3 199 214-423 566-831 (857)
169 CHL00095 clpC Clp protease ATP 99.3 1.2E-10 2.5E-15 130.9 17.2 197 216-423 509-784 (821)
170 COG0714 MoxR-like ATPases [Gen 99.3 6.7E-11 1.5E-15 119.4 13.9 144 217-382 25-203 (329)
171 cd00009 AAA The AAA+ (ATPases 99.3 1.1E-10 2.3E-15 101.9 13.2 128 220-367 2-150 (151)
172 COG0542 clpA ATP-binding subun 99.2 1.2E-10 2.7E-15 126.1 16.1 197 216-423 491-757 (786)
173 COG0470 HolB ATPase involved i 99.2 1.3E-10 2.9E-15 116.6 13.3 141 216-379 1-178 (325)
174 smart00350 MCM minichromosome 99.2 4.1E-10 8.9E-15 120.0 17.5 157 217-382 204-400 (509)
175 COG1474 CDC6 Cdc6-related prot 99.2 5E-10 1.1E-14 113.9 17.1 212 217-457 18-271 (366)
176 PRK08058 DNA polymerase III su 99.2 3.1E-10 6.7E-15 114.5 15.3 143 214-380 3-180 (329)
177 smart00763 AAA_PrkA PrkA AAA d 99.2 2.4E-10 5.3E-15 114.4 14.1 63 214-282 48-118 (361)
178 TIGR01817 nifA Nif-specific re 99.2 2.9E-10 6.3E-15 122.2 15.3 193 210-420 190-428 (534)
179 PHA02244 ATPase-like protein 99.2 1.4E-10 3.1E-15 116.1 11.6 112 249-371 119-263 (383)
180 PRK13531 regulatory ATPase Rav 99.2 2.3E-09 5E-14 111.1 20.4 142 217-381 21-193 (498)
181 PF07726 AAA_3: ATPase family 99.2 6.2E-11 1.3E-15 101.2 7.0 103 251-361 1-130 (131)
182 PF07728 AAA_5: AAA domain (dy 99.2 1.2E-10 2.6E-15 102.4 8.9 102 251-360 1-139 (139)
183 TIGR02974 phageshock_pspF psp 99.1 8.4E-10 1.8E-14 111.2 14.6 184 218-420 1-233 (329)
184 TIGR02031 BchD-ChlD magnesium 99.1 1.7E-09 3.6E-14 117.0 17.5 183 250-451 17-258 (589)
185 PF06068 TIP49: TIP49 C-termin 99.1 9.7E-10 2.1E-14 109.3 14.1 73 341-414 309-393 (398)
186 KOG0990 Replication factor C, 99.1 8.1E-10 1.7E-14 107.0 13.0 176 205-405 30-226 (360)
187 PRK05707 DNA polymerase III su 99.1 1.7E-09 3.6E-14 108.7 15.2 144 246-406 19-198 (328)
188 PRK11608 pspF phage shock prot 99.1 2.4E-09 5.2E-14 107.9 15.7 188 214-420 4-240 (326)
189 TIGR00602 rad24 checkpoint pro 99.1 6.9E-10 1.5E-14 119.6 12.3 188 205-410 73-322 (637)
190 TIGR03015 pepcterm_ATPase puta 99.1 7.7E-09 1.7E-13 101.1 18.0 86 355-452 178-267 (269)
191 COG0606 Predicted ATPase with 99.1 9.8E-10 2.1E-14 112.1 11.8 139 213-373 176-383 (490)
192 TIGR00764 lon_rel lon-related 99.1 1.8E-09 3.8E-14 117.0 14.6 103 339-452 268-392 (608)
193 PRK11388 DNA-binding transcrip 99.1 2.3E-09 5E-14 117.7 15.4 189 212-419 321-553 (638)
194 TIGR00368 Mg chelatase-related 99.1 5.4E-09 1.2E-13 110.4 17.4 138 213-372 189-394 (499)
195 COG1220 HslU ATP-dependent pro 99.0 1.8E-09 3.9E-14 105.1 10.9 69 217-285 16-86 (444)
196 PRK11331 5-methylcytosine-spec 99.0 3.6E-09 7.8E-14 108.8 13.5 132 215-368 174-357 (459)
197 TIGR02329 propionate_PrpR prop 99.0 4.9E-09 1.1E-13 111.5 14.9 188 213-419 209-449 (526)
198 COG0542 clpA ATP-binding subun 99.0 2.7E-09 5.8E-14 115.9 13.0 195 205-418 159-391 (786)
199 PRK15424 propionate catabolism 99.0 6.8E-09 1.5E-13 110.4 15.7 188 213-419 216-464 (538)
200 PRK10820 DNA-binding transcrip 99.0 7.6E-09 1.7E-13 110.6 15.7 192 210-420 198-437 (520)
201 PRK15429 formate hydrogenlyase 99.0 1.1E-08 2.3E-13 113.3 17.2 190 212-420 372-609 (686)
202 KOG1942 DNA helicase, TBP-inte 99.0 1.4E-08 3.1E-13 97.1 15.0 99 341-451 327-438 (456)
203 PRK05022 anaerobic nitric oxid 99.0 1.5E-08 3.2E-13 108.3 16.8 189 214-421 185-421 (509)
204 COG1239 ChlI Mg-chelatase subu 99.0 1E-08 2.2E-13 103.4 14.0 152 213-384 14-234 (423)
205 PRK08769 DNA polymerase III su 99.0 4.7E-08 1E-12 97.6 18.6 160 221-410 9-207 (319)
206 PF13177 DNA_pol3_delta2: DNA 98.9 1.2E-08 2.6E-13 92.3 13.0 125 220-368 1-160 (162)
207 COG1221 PspF Transcriptional r 98.9 4.5E-09 9.7E-14 106.8 10.7 188 212-421 74-310 (403)
208 PRK07993 DNA polymerase III su 98.9 3.7E-08 8E-13 99.3 17.3 144 246-407 21-200 (334)
209 COG3829 RocR Transcriptional r 98.9 1.3E-08 2.9E-13 105.3 14.2 189 210-418 239-477 (560)
210 PRK06871 DNA polymerase III su 98.9 4.7E-08 1E-12 97.8 17.6 139 247-403 22-195 (325)
211 COG1219 ClpX ATP-dependent pro 98.9 1.6E-08 3.5E-13 97.9 13.3 204 218-423 63-370 (408)
212 PTZ00111 DNA replication licen 98.9 5.8E-08 1.3E-12 107.1 19.0 156 217-380 451-655 (915)
213 COG2204 AtoC Response regulato 98.9 6.5E-09 1.4E-13 107.4 10.8 187 213-420 138-374 (464)
214 PF03215 Rad17: Rad17 cell cyc 98.9 3.1E-08 6.8E-13 105.0 16.2 197 206-421 9-269 (519)
215 COG3604 FhlA Transcriptional r 98.9 7.2E-09 1.6E-13 105.9 10.5 189 212-420 219-456 (550)
216 PF07724 AAA_2: AAA domain (Cd 98.9 5.7E-09 1.2E-13 95.2 8.7 103 248-350 2-131 (171)
217 PRK13765 ATP-dependent proteas 98.9 6.8E-08 1.5E-12 104.6 17.7 52 209-274 24-75 (637)
218 PRK08116 hypothetical protein; 98.9 1.3E-08 2.7E-13 99.7 10.5 147 209-371 78-251 (268)
219 smart00382 AAA ATPases associa 98.8 1.1E-08 2.4E-13 88.1 7.6 116 249-369 2-147 (148)
220 PRK06964 DNA polymerase III su 98.8 8.2E-08 1.8E-12 96.7 14.6 59 318-381 145-203 (342)
221 PRK09862 putative ATP-dependen 98.8 1E-07 2.2E-12 100.5 15.8 137 213-371 188-390 (506)
222 TIGR02915 PEP_resp_reg putativ 98.8 9E-08 2E-12 100.6 15.2 188 214-420 137-372 (445)
223 PRK06090 DNA polymerase III su 98.8 2.4E-07 5.2E-12 92.5 17.0 136 221-380 8-178 (319)
224 PF00158 Sigma54_activat: Sigm 98.7 6E-08 1.3E-12 88.2 9.9 124 218-361 1-155 (168)
225 PRK12377 putative replication 98.7 4.3E-08 9.4E-13 94.5 9.2 125 206-349 64-206 (248)
226 PF05621 TniB: Bacterial TniB 98.7 4.1E-07 8.8E-12 89.0 15.5 208 215-446 33-284 (302)
227 PRK10923 glnG nitrogen regulat 98.7 1.9E-07 4.1E-12 98.9 13.8 188 214-420 136-371 (469)
228 PRK11361 acetoacetate metaboli 98.7 2.3E-07 4.9E-12 97.9 14.3 188 214-420 141-376 (457)
229 PRK13406 bchD magnesium chelat 98.7 6.6E-07 1.4E-11 96.3 16.8 180 250-450 26-249 (584)
230 PRK07952 DNA replication prote 98.7 1.3E-07 2.8E-12 91.0 10.3 95 206-310 62-175 (244)
231 PRK08699 DNA polymerase III su 98.6 1.5E-07 3.3E-12 94.5 10.5 121 247-380 19-183 (325)
232 COG1241 MCM2 Predicted ATPase 98.6 2.1E-07 4.6E-12 100.4 11.6 225 215-452 285-593 (682)
233 TIGR01818 ntrC nitrogen regula 98.6 9.5E-07 2.1E-11 93.4 16.1 188 215-420 133-367 (463)
234 KOG0745 Putative ATP-dependent 98.6 1.1E-06 2.4E-11 88.4 15.1 175 250-424 227-512 (564)
235 PRK15115 response regulator Gl 98.6 2.6E-06 5.6E-11 89.6 18.7 161 249-419 157-366 (444)
236 PF09336 Vps4_C: Vps4 C termin 98.6 3.9E-08 8.6E-13 73.6 2.7 35 437-471 28-62 (62)
237 KOG0741 AAA+-type ATPase [Post 98.6 5.1E-07 1.1E-11 92.7 11.6 133 247-380 536-684 (744)
238 KOG1970 Checkpoint RAD17-RFC c 98.5 1.5E-06 3.2E-11 90.0 14.4 72 205-281 71-142 (634)
239 KOG1514 Origin recognition com 98.5 2.8E-06 6.1E-11 90.3 16.6 191 250-455 423-659 (767)
240 KOG2680 DNA helicase TIP49, TB 98.5 5.2E-06 1.1E-10 80.1 16.3 92 349-452 339-430 (454)
241 PRK06835 DNA replication prote 98.5 3.2E-07 6.9E-12 92.2 8.3 104 249-361 183-306 (329)
242 PRK08181 transposase; Validate 98.5 3.3E-07 7.2E-12 89.5 8.1 62 249-310 106-180 (269)
243 PF01695 IstB_IS21: IstB-like 98.5 1.1E-07 2.3E-12 87.5 3.9 62 248-309 46-120 (178)
244 PRK05917 DNA polymerase III su 98.4 3.3E-06 7.3E-11 82.9 13.9 111 246-369 16-154 (290)
245 PF14532 Sigma54_activ_2: Sigm 98.4 1.8E-07 3.8E-12 82.3 4.0 118 220-361 2-129 (138)
246 PRK08939 primosomal protein Dn 98.4 8E-07 1.7E-11 88.6 8.8 61 249-309 156-229 (306)
247 PF12775 AAA_7: P-loop contain 98.4 1.7E-06 3.7E-11 84.9 10.9 131 249-383 33-194 (272)
248 PF01637 Arch_ATPase: Archaeal 98.4 2.2E-06 4.7E-11 81.2 10.5 173 219-410 2-232 (234)
249 COG1484 DnaC DNA replication p 98.4 2.1E-06 4.6E-11 83.4 10.0 62 249-310 105-180 (254)
250 KOG0478 DNA replication licens 98.3 4.9E-06 1.1E-10 88.0 12.9 164 217-381 430-625 (804)
251 PRK07132 DNA polymerase III su 98.3 2.1E-05 4.6E-10 78.0 16.7 138 247-403 16-177 (299)
252 KOG1968 Replication factor C, 98.3 2.5E-06 5.4E-11 94.9 10.9 198 207-419 311-535 (871)
253 KOG0480 DNA replication licens 98.3 2.3E-06 5E-11 89.8 9.6 230 215-455 344-647 (764)
254 PRK06526 transposase; Provisio 98.3 7.3E-07 1.6E-11 86.5 5.5 61 249-309 98-171 (254)
255 PRK06921 hypothetical protein; 98.3 1.2E-06 2.7E-11 85.6 6.3 60 249-308 117-188 (266)
256 PRK05818 DNA polymerase III su 98.3 1.8E-05 3.9E-10 76.2 13.6 110 247-369 5-147 (261)
257 PRK10365 transcriptional regul 98.3 2.2E-05 4.7E-10 82.5 15.6 184 217-419 140-371 (441)
258 PF00493 MCM: MCM2/3/5 family 98.2 4E-07 8.7E-12 91.9 1.8 159 217-384 25-223 (331)
259 KOG2227 Pre-initiation complex 98.2 2.2E-05 4.8E-10 80.2 13.4 221 216-453 150-417 (529)
260 PRK07276 DNA polymerase III su 98.2 6.5E-05 1.4E-09 74.0 16.3 157 221-413 7-198 (290)
261 KOG0482 DNA replication licens 98.2 2.1E-05 4.6E-10 80.6 12.4 163 217-381 343-538 (721)
262 KOG4509 Uncharacterized conser 98.2 4.4E-06 9.6E-11 74.0 6.5 69 53-121 11-80 (247)
263 PRK09183 transposase/IS protei 98.1 5E-06 1.1E-10 81.1 7.4 61 249-309 102-176 (259)
264 PHA02624 large T antigen; Prov 98.1 7.7E-06 1.7E-10 86.8 8.5 119 247-368 429-561 (647)
265 COG3283 TyrR Transcriptional r 98.1 7.5E-05 1.6E-09 73.9 14.7 196 206-420 194-432 (511)
266 PLN03210 Resistant to P. syrin 98.1 0.00012 2.7E-09 85.8 19.3 71 195-275 160-233 (1153)
267 PF00910 RNA_helicase: RNA hel 98.1 1E-05 2.2E-10 67.8 7.3 54 252-311 1-63 (107)
268 KOG1051 Chaperone HSP104 and r 98.1 2.2E-05 4.8E-10 87.0 11.2 119 216-348 562-710 (898)
269 KOG0477 DNA replication licens 98.1 2.8E-05 6.1E-10 81.5 11.1 147 217-363 450-626 (854)
270 PHA00729 NTP-binding motif con 98.0 5.2E-06 1.1E-10 78.5 4.9 25 250-274 18-42 (226)
271 PRK08118 topology modulation p 98.0 2.3E-05 5.1E-10 71.2 7.8 101 251-384 3-103 (167)
272 PF13207 AAA_17: AAA domain; P 98.0 7.2E-06 1.6E-10 69.9 4.1 31 252-282 2-32 (121)
273 PF05729 NACHT: NACHT domain 98.0 5.1E-05 1.1E-09 67.8 9.6 129 251-384 2-165 (166)
274 TIGR02688 conserved hypothetic 97.9 0.00028 6.1E-09 72.4 15.8 61 249-312 209-275 (449)
275 PRK15455 PrkA family serine pr 97.9 1.4E-05 3.1E-10 84.4 6.6 68 205-280 67-135 (644)
276 PF03969 AFG1_ATPase: AFG1-lik 97.9 2.6E-05 5.6E-10 79.5 7.8 93 247-350 60-169 (362)
277 PRK07261 topology modulation p 97.9 1.9E-05 4.1E-10 72.1 6.1 102 251-384 2-103 (171)
278 KOG0481 DNA replication licens 97.9 0.00043 9.3E-09 71.4 15.4 156 217-374 332-519 (729)
279 PF13173 AAA_14: AAA domain 97.9 2.8E-05 6E-10 67.3 6.0 59 250-308 3-72 (128)
280 PF13401 AAA_22: AAA domain; P 97.8 5.8E-05 1.2E-09 65.0 7.8 36 249-284 4-47 (131)
281 PRK00131 aroK shikimate kinase 97.8 2E-05 4.4E-10 71.4 4.7 33 248-280 3-35 (175)
282 PF00931 NB-ARC: NB-ARC domain 97.8 0.00027 5.9E-09 69.5 13.1 150 247-413 17-203 (287)
283 PRK13949 shikimate kinase; Pro 97.8 4.6E-05 1E-09 69.4 6.9 103 250-372 2-106 (169)
284 COG5271 MDN1 AAA ATPase contai 97.8 0.00027 5.8E-09 81.2 13.0 127 249-384 1543-1705(4600)
285 PF06309 Torsin: Torsin; Inte 97.7 7.9E-05 1.7E-09 63.7 5.8 52 217-273 26-77 (127)
286 PF12774 AAA_6: Hydrolytic ATP 97.6 0.00043 9.4E-09 66.2 11.0 128 250-379 33-177 (231)
287 KOG2228 Origin recognition com 97.6 0.00021 4.6E-09 70.4 8.8 151 216-382 24-219 (408)
288 TIGR01618 phage_P_loop phage n 97.6 8.1E-05 1.8E-09 70.5 5.8 23 249-271 12-34 (220)
289 cd02020 CMPK Cytidine monophos 97.6 0.00028 6E-09 62.0 8.6 30 252-281 2-31 (147)
290 PRK03839 putative kinase; Prov 97.6 5.5E-05 1.2E-09 69.4 4.0 31 251-281 2-32 (180)
291 PRK13947 shikimate kinase; Pro 97.6 6.1E-05 1.3E-09 68.3 4.3 31 251-281 3-33 (171)
292 PF13604 AAA_30: AAA domain; P 97.6 0.00062 1.3E-08 63.5 11.0 87 250-348 19-132 (196)
293 PF13191 AAA_16: AAA ATPase do 97.6 6.3E-05 1.4E-09 68.7 4.3 59 218-285 2-63 (185)
294 PF13671 AAA_33: AAA domain; P 97.6 5.5E-05 1.2E-09 66.3 3.7 26 252-277 2-27 (143)
295 COG3284 AcoR Transcriptional a 97.6 0.00012 2.5E-09 77.7 6.6 161 250-420 337-540 (606)
296 KOG3347 Predicted nucleotide k 97.6 6.3E-05 1.4E-09 65.6 3.5 32 250-281 8-39 (176)
297 cd00464 SK Shikimate kinase (S 97.5 7.7E-05 1.7E-09 66.2 4.1 31 251-281 1-31 (154)
298 PRK00625 shikimate kinase; Pro 97.5 7.9E-05 1.7E-09 68.1 4.3 31 251-281 2-32 (173)
299 COG3267 ExeA Type II secretory 97.5 0.0011 2.4E-08 63.2 11.9 65 358-423 189-256 (269)
300 PRK14532 adenylate kinase; Pro 97.5 8.7E-05 1.9E-09 68.6 4.2 36 251-288 2-37 (188)
301 TIGR01359 UMP_CMP_kin_fam UMP- 97.5 9E-05 2E-09 68.0 4.1 36 252-289 2-37 (183)
302 PRK14722 flhF flagellar biosyn 97.5 0.00046 1E-08 70.4 9.4 101 249-357 137-267 (374)
303 KOG2170 ATPase of the AAA+ sup 97.4 0.001 2.2E-08 64.7 10.4 52 217-273 83-134 (344)
304 PRK14531 adenylate kinase; Pro 97.4 0.00014 3E-09 67.1 4.4 35 250-286 3-37 (183)
305 COG1485 Predicted ATPase [Gene 97.4 0.00073 1.6E-08 67.2 9.6 30 246-275 62-91 (367)
306 PHA02774 E1; Provisional 97.4 0.0011 2.4E-08 70.4 11.5 73 249-332 434-507 (613)
307 PRK04040 adenylate kinase; Pro 97.4 0.0011 2.3E-08 61.5 10.2 35 249-285 2-38 (188)
308 cd01120 RecA-like_NTPases RecA 97.4 0.00028 6.1E-09 62.6 6.1 32 252-283 2-36 (165)
309 COG0703 AroK Shikimate kinase 97.4 0.00012 2.6E-09 66.1 3.7 32 250-281 3-34 (172)
310 cd02021 GntK Gluconate kinase 97.4 0.00014 3E-09 64.5 4.0 28 252-279 2-29 (150)
311 cd01428 ADK Adenylate kinase ( 97.4 0.00014 3E-09 67.3 4.1 34 252-287 2-35 (194)
312 COG1936 Predicted nucleotide k 97.4 4.3E-05 9.4E-10 68.5 0.6 30 251-281 2-31 (180)
313 PRK06217 hypothetical protein; 97.4 0.00016 3.4E-09 66.7 4.2 31 251-281 3-33 (183)
314 PRK13948 shikimate kinase; Pro 97.4 0.0002 4.3E-09 66.0 4.8 35 247-281 8-42 (182)
315 cd00227 CPT Chloramphenicol (C 97.4 0.00014 3.1E-09 66.4 3.8 36 250-285 3-38 (175)
316 TIGR01313 therm_gnt_kin carboh 97.4 0.00016 3.4E-09 65.2 3.7 28 252-279 1-28 (163)
317 PRK14530 adenylate kinase; Pro 97.3 0.0002 4.4E-09 67.7 4.4 30 251-280 5-34 (215)
318 COG1102 Cmk Cytidylate kinase 97.3 0.0002 4.3E-09 63.5 3.6 28 252-279 3-30 (179)
319 PRK08233 hypothetical protein; 97.3 0.0012 2.5E-08 60.4 8.8 32 250-281 4-36 (182)
320 PRK06762 hypothetical protein; 97.3 0.00025 5.4E-09 64.1 4.1 34 249-282 2-35 (166)
321 PRK06547 hypothetical protein; 97.3 0.00029 6.4E-09 64.3 4.4 33 248-280 14-46 (172)
322 PRK03731 aroL shikimate kinase 97.3 0.00029 6.2E-09 64.0 4.4 32 250-281 3-34 (171)
323 PTZ00088 adenylate kinase 1; P 97.3 0.00028 6E-09 67.5 4.3 35 250-286 7-41 (229)
324 PRK13946 shikimate kinase; Pro 97.3 0.00026 5.7E-09 65.3 4.0 33 249-281 10-42 (184)
325 COG1618 Predicted nucleotide k 97.2 0.0013 2.8E-08 58.4 8.0 25 249-273 5-29 (179)
326 KOG2709 Uncharacterized conser 97.2 0.0017 3.8E-08 65.1 9.8 85 48-132 13-99 (560)
327 PRK05057 aroK shikimate kinase 97.2 0.00032 6.9E-09 64.1 4.4 34 249-282 4-37 (172)
328 PLN02200 adenylate kinase fami 97.2 0.00036 7.7E-09 67.0 4.8 38 249-288 43-80 (234)
329 PRK14528 adenylate kinase; Pro 97.2 0.00031 6.7E-09 65.0 4.2 31 250-280 2-32 (186)
330 PF01745 IPT: Isopentenyl tran 97.2 0.0016 3.5E-08 60.6 8.7 141 251-401 3-160 (233)
331 PRK11889 flhF flagellar biosyn 97.2 0.0023 5E-08 65.3 10.6 60 221-283 216-278 (436)
332 TIGR01351 adk adenylate kinase 97.2 0.0003 6.6E-09 66.3 4.0 33 252-286 2-34 (210)
333 TIGR02237 recomb_radB DNA repa 97.2 0.0015 3.2E-08 61.3 8.6 39 246-284 9-50 (209)
334 PRK02496 adk adenylate kinase; 97.2 0.00031 6.7E-09 64.7 3.9 30 251-280 3-32 (184)
335 TIGR01360 aden_kin_iso1 adenyl 97.2 0.00034 7.4E-09 64.2 4.2 30 250-279 4-33 (188)
336 COG5271 MDN1 AAA ATPase contai 97.2 0.0057 1.2E-07 71.0 13.9 141 250-404 889-1064(4600)
337 PF13245 AAA_19: Part of AAA d 97.2 0.00066 1.4E-08 53.2 4.9 24 250-273 11-35 (76)
338 PRK08154 anaerobic benzoate ca 97.2 0.00069 1.5E-08 67.8 6.2 36 246-281 130-165 (309)
339 PRK00279 adk adenylate kinase; 97.2 0.00038 8.2E-09 65.9 4.1 35 251-287 2-36 (215)
340 PRK14700 recombination factor 97.2 0.0031 6.7E-08 61.9 10.3 108 337-457 6-121 (300)
341 PLN02840 tRNA dimethylallyltra 97.1 0.0056 1.2E-07 63.3 12.6 36 249-284 21-56 (421)
342 PF13086 AAA_11: AAA domain; P 97.1 0.00057 1.2E-08 64.5 5.0 22 252-273 20-41 (236)
343 COG4088 Predicted nucleotide k 97.1 0.001 2.2E-08 61.4 6.3 24 251-274 3-26 (261)
344 KOG1051 Chaperone HSP104 and r 97.1 0.0033 7.2E-08 70.2 11.1 188 214-420 184-410 (898)
345 PRK12723 flagellar biosynthesi 97.1 0.0049 1.1E-07 63.4 11.7 57 216-273 142-198 (388)
346 PRK14527 adenylate kinase; Pro 97.1 0.00043 9.2E-09 64.2 3.6 31 249-279 6-36 (191)
347 PRK10867 signal recognition pa 97.1 0.0033 7.1E-08 65.6 10.3 38 247-284 98-139 (433)
348 cd02024 NRK1 Nicotinamide ribo 97.1 0.0033 7.3E-08 58.1 9.3 30 252-281 2-32 (187)
349 PF00406 ADK: Adenylate kinase 97.1 0.00039 8.5E-09 61.8 3.0 35 254-290 1-35 (151)
350 PF13238 AAA_18: AAA domain; P 97.1 0.00043 9.4E-09 59.1 3.1 22 252-273 1-22 (129)
351 COG0563 Adk Adenylate kinase a 97.1 0.00057 1.2E-08 62.7 4.0 28 251-278 2-29 (178)
352 COG5245 DYN1 Dynein, heavy cha 97.0 0.00087 1.9E-08 76.6 6.1 171 246-417 1491-1713(3164)
353 PRK00091 miaA tRNA delta(2)-is 97.0 0.0024 5.2E-08 63.7 8.7 35 250-284 5-39 (307)
354 PRK05480 uridine/cytidine kina 97.0 0.0061 1.3E-07 57.3 11.0 35 249-283 6-41 (209)
355 PF00448 SRP54: SRP54-type pro 97.0 0.00052 1.1E-08 64.0 3.6 25 249-273 1-25 (196)
356 COG1855 ATPase (PilT family) [ 97.0 0.00033 7.2E-09 71.4 2.4 50 207-273 238-287 (604)
357 PLN02674 adenylate kinase 97.0 0.0007 1.5E-08 65.2 4.4 38 249-288 31-68 (244)
358 cd02019 NK Nucleoside/nucleoti 97.0 0.00088 1.9E-08 51.3 4.0 22 252-273 2-23 (69)
359 PRK01184 hypothetical protein; 97.0 0.0007 1.5E-08 62.3 3.9 35 251-288 3-37 (184)
360 PRK14526 adenylate kinase; Pro 97.0 0.00074 1.6E-08 63.7 4.1 34 251-286 2-35 (211)
361 PRK06696 uridine kinase; Valid 96.9 0.0022 4.7E-08 61.1 7.1 38 249-286 22-62 (223)
362 PHA02530 pseT polynucleotide k 96.9 0.00085 1.8E-08 66.7 4.4 29 250-278 3-32 (300)
363 PRK04132 replication factor C 96.9 0.00054 1.2E-08 76.5 3.2 49 205-265 8-56 (846)
364 PRK04182 cytidylate kinase; Pr 96.9 0.00092 2E-08 60.8 4.0 29 251-279 2-30 (180)
365 PF13521 AAA_28: AAA domain; P 96.9 0.00082 1.8E-08 60.5 3.6 26 252-278 2-27 (163)
366 TIGR00174 miaA tRNA isopenteny 96.9 0.0039 8.5E-08 61.5 8.3 34 252-285 2-35 (287)
367 PTZ00202 tuzin; Provisional 96.9 0.0075 1.6E-07 62.2 10.4 62 213-283 259-320 (550)
368 PLN02165 adenylate isopentenyl 96.9 0.0028 6E-08 63.5 7.3 35 249-283 43-77 (334)
369 PTZ00301 uridine kinase; Provi 96.8 0.0072 1.6E-07 57.0 9.6 23 251-273 5-27 (210)
370 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0011 2.4E-08 59.8 4.0 29 252-280 3-31 (171)
371 PF10662 PduV-EutP: Ethanolami 96.8 0.0061 1.3E-07 53.6 8.2 113 250-387 2-120 (143)
372 TIGR02012 tigrfam_recA protein 96.8 0.0045 9.7E-08 62.0 8.3 35 249-283 55-92 (321)
373 PF14516 AAA_35: AAA-like doma 96.8 0.018 3.9E-07 58.3 12.8 161 247-418 29-245 (331)
374 cd02027 APSK Adenosine 5'-phos 96.8 0.0013 2.9E-08 58.4 4.1 32 252-283 2-36 (149)
375 PRK05541 adenylylsulfate kinas 96.8 0.0013 2.9E-08 59.9 4.1 28 247-274 5-32 (176)
376 TIGR00150 HI0065_YjeE ATPase, 96.8 0.0016 3.5E-08 56.7 4.3 29 248-276 21-49 (133)
377 KOG2543 Origin recognition com 96.7 0.012 2.6E-07 59.3 10.5 61 216-285 6-66 (438)
378 TIGR00152 dephospho-CoA kinase 96.7 0.0025 5.5E-08 58.9 5.4 29 252-280 2-30 (188)
379 PRK06581 DNA polymerase III su 96.7 0.041 8.9E-07 52.5 13.5 138 248-401 14-177 (263)
380 PRK14529 adenylate kinase; Pro 96.7 0.0013 2.8E-08 62.6 3.4 29 251-279 2-30 (223)
381 PF08298 AAA_PrkA: PrkA AAA do 96.7 0.0032 7E-08 63.2 6.3 53 215-273 59-112 (358)
382 PF05272 VirE: Virulence-assoc 96.7 0.0016 3.5E-08 60.8 4.0 104 248-361 51-163 (198)
383 TIGR03574 selen_PSTK L-seryl-t 96.7 0.0016 3.4E-08 63.1 4.0 31 252-282 2-35 (249)
384 cd01124 KaiC KaiC is a circadi 96.7 0.0025 5.4E-08 58.4 5.2 33 252-284 2-37 (187)
385 PLN02199 shikimate kinase 96.7 0.0018 4E-08 63.6 4.5 33 249-281 102-134 (303)
386 PRK12339 2-phosphoglycerate ki 96.7 0.002 4.2E-08 60.2 4.5 36 249-286 3-38 (197)
387 PLN02459 probable adenylate ki 96.7 0.0019 4E-08 62.7 4.4 35 251-287 31-65 (261)
388 PF03029 ATP_bind_1: Conserved 96.7 0.0011 2.3E-08 63.9 2.7 57 254-310 1-60 (238)
389 PRK10078 ribose 1,5-bisphospho 96.7 0.0016 3.4E-08 60.2 3.7 29 250-278 3-31 (186)
390 PRK12724 flagellar biosynthesi 96.7 0.02 4.2E-07 59.3 11.9 25 249-273 223-247 (432)
391 PRK05703 flhF flagellar biosyn 96.6 0.015 3.2E-07 60.8 11.2 36 249-284 221-261 (424)
392 TIGR03499 FlhF flagellar biosy 96.6 0.0087 1.9E-07 59.1 9.0 36 249-284 194-234 (282)
393 PRK11823 DNA repair protein Ra 96.6 0.0061 1.3E-07 64.2 8.3 38 247-284 78-118 (446)
394 PF03266 NTPase_1: NTPase; In 96.6 0.0017 3.8E-08 59.0 3.6 23 251-273 1-23 (168)
395 PRK00771 signal recognition pa 96.6 0.0083 1.8E-07 62.7 9.0 38 247-284 93-133 (437)
396 PRK00889 adenylylsulfate kinas 96.6 0.0032 6.9E-08 57.4 5.2 35 249-283 4-41 (175)
397 PRK13808 adenylate kinase; Pro 96.6 0.0019 4.1E-08 64.8 3.9 35 251-287 2-36 (333)
398 PRK12338 hypothetical protein; 96.6 0.0024 5.3E-08 63.6 4.6 30 249-278 4-33 (319)
399 TIGR00064 ftsY signal recognit 96.6 0.0084 1.8E-07 58.9 8.3 38 247-284 70-110 (272)
400 KOG2383 Predicted ATPase [Gene 96.6 0.013 2.9E-07 59.2 9.7 27 246-272 111-137 (467)
401 PF05707 Zot: Zonular occluden 96.5 0.0062 1.3E-07 56.6 6.6 110 252-367 3-144 (193)
402 PF06414 Zeta_toxin: Zeta toxi 96.5 0.0025 5.4E-08 59.5 3.9 41 247-287 13-54 (199)
403 COG0324 MiaA tRNA delta(2)-iso 96.5 0.0078 1.7E-07 59.6 7.4 37 249-285 3-39 (308)
404 PRK12726 flagellar biosynthesi 96.5 0.0091 2E-07 60.8 8.0 89 192-285 154-245 (407)
405 COG4650 RtcR Sigma54-dependent 96.5 0.0044 9.5E-08 60.1 5.4 38 250-287 209-252 (531)
406 COG0572 Udk Uridine kinase [Nu 96.5 0.026 5.7E-07 53.0 10.4 26 251-276 10-35 (218)
407 cd00983 recA RecA is a bacter 96.5 0.011 2.4E-07 59.2 8.5 35 249-283 55-92 (325)
408 cd02022 DPCK Dephospho-coenzym 96.5 0.003 6.5E-08 57.9 4.1 29 252-281 2-30 (179)
409 PF10443 RNA12: RNA12 protein; 96.5 0.031 6.7E-07 57.6 11.7 49 223-285 3-53 (431)
410 TIGR02322 phosphon_PhnN phosph 96.4 0.0025 5.4E-08 58.3 3.4 25 251-275 3-27 (179)
411 PF01583 APS_kinase: Adenylyls 96.4 0.0034 7.5E-08 56.1 4.1 37 250-286 3-42 (156)
412 KOG3354 Gluconate kinase [Carb 96.4 0.0034 7.3E-08 55.3 3.7 30 250-279 13-42 (191)
413 PRK13975 thymidylate kinase; P 96.4 0.0038 8.2E-08 57.8 4.3 28 250-277 3-30 (196)
414 COG1373 Predicted ATPase (AAA+ 96.4 0.17 3.7E-06 52.6 16.9 124 251-388 39-186 (398)
415 PRK09825 idnK D-gluconate kina 96.4 0.0041 8.9E-08 57.0 4.5 34 250-285 4-37 (176)
416 PRK14974 cell division protein 96.4 0.014 2.9E-07 59.1 8.5 36 248-283 139-177 (336)
417 PRK08356 hypothetical protein; 96.4 0.0041 8.9E-08 57.8 4.5 32 250-284 6-37 (195)
418 TIGR01448 recD_rel helicase, p 96.4 0.018 3.9E-07 64.3 10.3 24 250-273 339-362 (720)
419 PRK14737 gmk guanylate kinase; 96.4 0.0032 7E-08 58.2 3.7 26 249-274 4-29 (186)
420 PRK04841 transcriptional regul 96.4 0.17 3.7E-06 58.1 18.6 32 249-281 32-63 (903)
421 TIGR01613 primase_Cterm phage/ 96.3 0.0093 2E-07 59.6 7.2 52 221-278 54-105 (304)
422 PRK00300 gmk guanylate kinase; 96.3 0.0041 8.8E-08 58.1 4.3 27 248-274 4-30 (205)
423 cd01128 rho_factor Transcripti 96.3 0.016 3.4E-07 56.1 8.3 27 249-275 16-42 (249)
424 COG0529 CysC Adenylylsulfate k 96.3 0.0059 1.3E-07 55.1 4.9 40 247-286 21-63 (197)
425 PF00485 PRK: Phosphoribulokin 96.3 0.0033 7.1E-08 58.4 3.3 23 252-274 2-24 (194)
426 TIGR03877 thermo_KaiC_1 KaiC d 96.3 0.0082 1.8E-07 57.7 6.1 41 244-284 16-59 (237)
427 TIGR03263 guanyl_kin guanylate 96.3 0.003 6.4E-08 57.7 2.9 25 251-275 3-27 (180)
428 cd02028 UMPK_like Uridine mono 96.3 0.005 1.1E-07 56.6 4.4 34 252-285 2-38 (179)
429 PRK06761 hypothetical protein; 96.3 0.0045 9.7E-08 60.9 4.2 32 250-281 4-35 (282)
430 KOG0479 DNA replication licens 96.3 0.014 3E-07 61.5 7.9 154 217-372 302-488 (818)
431 PRK09361 radB DNA repair and r 96.2 0.0077 1.7E-07 57.2 5.8 37 247-283 21-60 (225)
432 PRK14730 coaE dephospho-CoA ki 96.2 0.0044 9.5E-08 57.8 4.0 29 251-279 3-31 (195)
433 cd01121 Sms Sms (bacterial rad 96.2 0.013 2.7E-07 60.2 7.6 37 247-283 80-119 (372)
434 PRK10416 signal recognition pa 96.2 0.013 2.9E-07 58.8 7.7 62 222-283 86-151 (318)
435 cd01394 radB RadB. The archaea 96.2 0.0081 1.8E-07 56.7 5.8 37 247-283 17-56 (218)
436 TIGR02768 TraA_Ti Ti-type conj 96.2 0.021 4.5E-07 64.0 9.9 33 250-282 369-404 (744)
437 cd02023 UMPK Uridine monophosp 96.2 0.0058 1.3E-07 56.8 4.7 33 252-284 2-35 (198)
438 cd00071 GMPK Guanosine monopho 96.2 0.0044 9.6E-08 54.3 3.7 25 252-276 2-26 (137)
439 PF00437 T2SE: Type II/IV secr 96.2 0.0046 9.9E-08 60.5 4.2 54 211-274 99-152 (270)
440 PRK05800 cobU adenosylcobinami 96.2 0.0049 1.1E-07 56.2 4.0 33 251-283 3-35 (170)
441 PF12780 AAA_8: P-loop contain 96.2 0.11 2.4E-06 50.9 13.6 57 217-283 9-65 (268)
442 PRK04220 2-phosphoglycerate ki 96.2 0.0059 1.3E-07 60.4 4.6 30 248-277 91-120 (301)
443 PRK14738 gmk guanylate kinase; 96.2 0.0046 1E-07 58.1 3.6 24 249-272 13-36 (206)
444 PRK11545 gntK gluconate kinase 96.1 0.0042 9.2E-08 56.1 3.2 25 255-279 1-25 (163)
445 CHL00195 ycf46 Ycf46; Provisio 96.1 0.05 1.1E-06 57.8 11.7 109 298-417 82-190 (489)
446 PF08433 KTI12: Chromatin asso 96.1 0.019 4.1E-07 56.3 7.9 31 252-282 4-37 (270)
447 PRK06067 flagellar accessory p 96.1 0.011 2.5E-07 56.5 6.2 39 247-285 23-64 (234)
448 PF06745 KaiC: KaiC; InterPro 96.1 0.0084 1.8E-07 57.0 5.2 39 246-284 16-58 (226)
449 PF02367 UPF0079: Uncharacteri 96.1 0.0055 1.2E-07 52.6 3.5 29 249-277 15-43 (123)
450 TIGR00017 cmk cytidylate kinas 96.1 0.0061 1.3E-07 57.8 4.1 29 251-279 4-32 (217)
451 PRK03846 adenylylsulfate kinas 96.1 0.0085 1.8E-07 55.9 5.1 39 247-285 22-63 (198)
452 PRK09354 recA recombinase A; P 96.1 0.022 4.8E-07 57.6 8.3 35 249-283 60-97 (349)
453 cd03115 SRP The signal recogni 96.1 0.0083 1.8E-07 54.5 4.8 33 252-284 3-38 (173)
454 cd01129 PulE-GspE PulE/GspE Th 96.1 0.011 2.4E-07 57.8 5.9 50 212-274 56-105 (264)
455 PF04665 Pox_A32: Poxvirus A32 96.0 0.084 1.8E-06 50.7 11.6 120 249-381 13-169 (241)
456 COG0467 RAD55 RecA-superfamily 96.0 0.012 2.6E-07 57.3 6.1 39 247-285 21-62 (260)
457 PRK13764 ATPase; Provisional 96.0 0.0075 1.6E-07 65.2 5.0 26 249-274 257-282 (602)
458 TIGR00235 udk uridine kinase. 96.0 0.006 1.3E-07 57.3 3.6 25 250-274 7-31 (207)
459 PRK00081 coaE dephospho-CoA ki 96.0 0.0077 1.7E-07 56.0 4.3 31 250-281 3-33 (194)
460 cd01131 PilT Pilus retraction 96.0 0.0058 1.3E-07 57.1 3.3 24 251-274 3-26 (198)
461 PF06431 Polyoma_lg_T_C: Polyo 95.9 0.0082 1.8E-07 60.2 4.4 117 249-368 155-285 (417)
462 cd01672 TMPK Thymidine monopho 95.9 0.01 2.2E-07 54.7 4.8 30 252-281 3-35 (200)
463 PRK13951 bifunctional shikimat 95.9 0.0075 1.6E-07 64.1 4.3 31 251-281 2-32 (488)
464 PRK08533 flagellar accessory p 95.9 0.017 3.8E-07 55.2 6.4 37 247-283 22-61 (230)
465 PRK07667 uridine kinase; Provi 95.9 0.011 2.3E-07 55.0 4.8 36 250-285 18-56 (193)
466 PLN02748 tRNA dimethylallyltra 95.9 0.02 4.4E-07 60.2 7.3 36 249-284 22-57 (468)
467 TIGR00455 apsK adenylylsulfate 95.9 0.012 2.6E-07 54.1 5.0 38 247-284 16-56 (184)
468 PRK14021 bifunctional shikimat 95.9 0.0071 1.5E-07 65.3 4.0 33 250-282 7-39 (542)
469 PRK14723 flhF flagellar biosyn 95.9 0.036 7.9E-07 61.4 9.4 25 249-273 185-209 (767)
470 COG4619 ABC-type uncharacteriz 95.9 0.0075 1.6E-07 54.2 3.3 25 248-272 28-52 (223)
471 PF07931 CPT: Chloramphenicol 95.8 0.0081 1.7E-07 54.8 3.6 38 251-288 3-40 (174)
472 TIGR02655 circ_KaiC circadian 95.8 0.03 6.4E-07 59.7 8.5 38 246-283 260-300 (484)
473 PRK05973 replicative DNA helic 95.8 0.014 3E-07 56.0 5.3 37 247-283 62-101 (237)
474 PRK00023 cmk cytidylate kinase 95.8 0.0078 1.7E-07 57.4 3.6 31 250-280 5-35 (225)
475 PRK08099 bifunctional DNA-bind 95.8 0.0096 2.1E-07 61.7 4.5 31 249-279 219-249 (399)
476 PRK10536 hypothetical protein; 95.8 0.0072 1.6E-07 58.4 3.2 22 251-272 76-97 (262)
477 TIGR03878 thermo_KaiC_2 KaiC d 95.8 0.012 2.6E-07 57.4 4.9 36 247-282 34-72 (259)
478 TIGR03881 KaiC_arch_4 KaiC dom 95.8 0.019 4.2E-07 54.6 6.2 38 246-283 17-57 (229)
479 PRK14733 coaE dephospho-CoA ki 95.8 0.011 2.4E-07 55.4 4.4 32 250-281 7-38 (204)
480 TIGR00376 DNA helicase, putati 95.8 0.022 4.7E-07 62.7 7.3 34 250-283 174-210 (637)
481 PF01121 CoaE: Dephospho-CoA k 95.8 0.023 5E-07 52.2 6.4 29 252-281 3-31 (180)
482 PRK09518 bifunctional cytidyla 95.8 0.0084 1.8E-07 67.0 4.1 31 251-281 3-33 (712)
483 PLN02348 phosphoribulokinase 95.8 0.067 1.5E-06 54.8 10.2 26 250-275 50-75 (395)
484 TIGR02782 TrbB_P P-type conjug 95.8 0.0098 2.1E-07 59.2 4.1 25 249-273 132-156 (299)
485 COG1419 FlhF Flagellar GTP-bin 95.8 0.034 7.3E-07 56.9 8.0 25 249-273 203-227 (407)
486 PRK04328 hypothetical protein; 95.8 0.019 4.1E-07 55.6 6.0 38 247-284 21-61 (249)
487 PRK09376 rho transcription ter 95.7 0.014 3.1E-07 59.6 5.2 26 250-275 170-195 (416)
488 cd00820 PEPCK_HprK Phosphoenol 95.7 0.0095 2.1E-07 49.8 3.2 22 249-270 15-36 (107)
489 cd01123 Rad51_DMC1_radA Rad51_ 95.7 0.018 3.9E-07 55.0 5.7 26 247-272 17-42 (235)
490 PF00625 Guanylate_kin: Guanyl 95.7 0.017 3.6E-07 53.1 5.2 29 249-277 2-30 (183)
491 COG3854 SpoIIIAA ncharacterize 95.7 0.01 2.2E-07 55.9 3.6 25 249-273 137-161 (308)
492 cd00046 DEXDc DEAD-like helica 95.7 0.013 2.8E-07 49.8 4.2 35 250-284 1-40 (144)
493 smart00487 DEXDc DEAD-like hel 95.7 0.035 7.7E-07 50.2 7.3 24 250-273 25-49 (201)
494 PF09848 DUF2075: Uncharacteri 95.7 0.028 6E-07 57.4 7.1 23 251-273 3-25 (352)
495 PRK06731 flhF flagellar biosyn 95.7 0.062 1.3E-06 52.6 9.3 26 248-273 74-99 (270)
496 cd01918 HprK_C HprK/P, the bif 95.6 0.0096 2.1E-07 52.8 3.2 24 249-272 14-37 (149)
497 TIGR01425 SRP54_euk signal rec 95.6 0.03 6.5E-07 58.3 7.3 37 247-283 98-137 (429)
498 cd02026 PRK Phosphoribulokinas 95.6 0.021 4.7E-07 56.1 6.0 23 252-274 2-24 (273)
499 PRK12337 2-phosphoglycerate ki 95.6 0.012 2.6E-07 61.3 4.4 30 248-277 254-283 (475)
500 PF13555 AAA_29: P-loop contai 95.6 0.011 2.3E-07 44.3 2.9 23 251-273 25-47 (62)
No 1
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.1e-75 Score=544.06 Aligned_cols=384 Identities=40% Similarity=0.645 Sum_probs=327.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012000 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQVSDRLQALNR 130 (473)
Q Consensus 52 ~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~raek~k~~i~~rl~~l~~ 130 (473)
+++++||+++++|+..|++++|++|+.+|++|++||+.+++|| .+++.++.++.|+.+|++|||+++.++ ..
T Consensus 5 ~~l~kaI~lv~kA~~eD~a~nY~eA~~lY~~aleYF~~~lKYE~~~~kaKd~IraK~~EYLdRAEkLK~yL-------~~ 77 (439)
T KOG0739|consen 5 SFLQKAIDLVKKAIDEDNAKNYEEALRLYQNALEYFLHALKYEANNKKAKDSIRAKFTEYLDRAEKLKAYL-------KE 77 (439)
T ss_pred hHHHHHHHHHHHHhhhcchhchHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHHHHHHH-------Hh
Confidence 4889999999999999999999999999999999999999999 677799999999999999999999984 33
Q ss_pred hhCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccccccccccCCCccccccCCCcChHHHHHhhhccccCC
Q 012000 131 RAGGTSTSKSTSPHAQTAAVSSTSNFRKNISPNSPRSSRNNPVVRNQTEKTGSSKPLAEAGNGYDSKLVEMINTAIVDRS 210 (473)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~ 210 (473)
...+...+ ... +.++ .+ .++ ++ .+......+....++|...++..|+.+.
T Consensus 78 ~~~~~~k~-~~~------a~a~-----------~~---~~k--------~~-ds~~eg~d~~pe~kKLr~~L~sAIv~EK 127 (439)
T KOG0739|consen 78 KEKGAGKK-GDE------AVAT-----------VP---KGK--------KK-DSDGEGEDDEPEKKKLRSALNSAIVREK 127 (439)
T ss_pred hccCCCCC-Ccc------ccCC-----------CC---CCC--------CC-CccccccCCChhHHHHHHHhhhhhhccC
Confidence 21111100 000 0000 00 000 00 0000001112245788899999999999
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~ 290 (473)
|+|.|+||+|++.+|++|+|+|++|+.+|++|++.+.||+||||||||||||++||+|+|.+.+.+||+|+.++|+++|+
T Consensus 128 PNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvSKWm 207 (439)
T KOG0739|consen 128 PNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSKWM 207 (439)
T ss_pred CCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhccee-----------eeecc---ccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHH
Q 012000 291 GEGEKLVRTLF-----------MIDSI---MSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 356 (473)
Q Consensus 291 g~~~~~~~~if-----------~IDei---~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al 356 (473)
|+++++++.+| +||+| +..+.+++++.++|+..+||.+|.|+..+ .+.|+|+|+||.||.||.|+
T Consensus 208 GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d-~~gvLVLgATNiPw~LDsAI 286 (439)
T KOG0739|consen 208 GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGND-NDGVLVLGATNIPWVLDSAI 286 (439)
T ss_pred ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccC-CCceEEEecCCCchhHHHHH
Confidence 99999987555 46655 55677889999999999999999999854 67799999999999999999
Q ss_pred hcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc-----cc-
Q 012000 357 LRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI-----LT- 430 (473)
Q Consensus 357 ~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~-----~~- 430 (473)
+|||.++||+|+|+..+|..+|+.++.+.++.+++.++.+|+++|+||||+||..+|++|.+.++|+++... ..
T Consensus 287 RRRFekRIYIPLPe~~AR~~MF~lhlG~tp~~LT~~d~~eL~~kTeGySGsDisivVrDalmePvRkvqsAthFk~v~~~ 366 (439)
T KOG0739|consen 287 RRRFEKRIYIPLPEAHARARMFKLHLGDTPHVLTEQDFKELARKTEGYSGSDISIVVRDALMEPVRKVQSATHFKKVSGP 366 (439)
T ss_pred HHHhhcceeccCCcHHHhhhhheeccCCCccccchhhHHHHHhhcCCCCcCceEEEehhhhhhhHHHhhhhhhhhccCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986410 00
Q ss_pred ---------------------------c--ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCC
Q 012000 431 ---------------------------V--KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 473 (473)
Q Consensus 431 ---------------------------~--~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~~ 473 (473)
. ...-.++||+.||..+|...+|+++.+++.++++|++.||.|
T Consensus 367 s~~~~~~~lltpcspgd~ga~em~w~dv~~dkl~eP~vt~~D~~k~l~~tkPTvn~~Dl~k~~~Ft~dFGqE 438 (439)
T KOG0739|consen 367 SNPSEVDDLLTPCSPGDPGAIEMSWMDVPADKLLEPPVTMRDFLKSLSRTKPTVNEDDLLKHEKFTEDFGQE 438 (439)
T ss_pred CChhhhccccCCCCCCCcchhhhhhccCCHhhccCCCccHHHHHHHHhhcCCCCCHHHHHHHHHHHHhhccC
Confidence 0 011136899999999999999999999999999999999986
No 2
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-58 Score=444.55 Aligned_cols=281 Identities=48% Similarity=0.818 Sum_probs=251.7
Q ss_pred CCCcChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHH
Q 012000 191 GNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVA 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA 270 (473)
..+++..|++.+...|+.+.|+++|+||+|++++|+-|+|+|++|+..|++|++...||+|||++||||||||+||+|+|
T Consensus 187 ~~~~d~~Lve~lerdIl~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvA 266 (491)
T KOG0738|consen 187 SLGYDADLVEALERDILQRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVA 266 (491)
T ss_pred cccchHHHHHHHHHHHhccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHH
Confidence 34677899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCcEEEEecCccchhhhhhhhhhhcceee-----------eeccc---cccc-cCcchHHHHHHHHHHHHhcCcCCC
Q 012000 271 SESQATFFNVSASSLTSKWVGEGEKLVRTLFM-----------IDSIM---STRM-ANENDASRRLKSEFLIQFDGVTSN 335 (473)
Q Consensus 271 ~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~-----------IDei~---~~~~-~~~~~~~~~~~~~ll~~ldg~~~~ 335 (473)
.|++.+||+|+.+.+.++|-|++++.++.+|. ||||+ ..|+ +.+++.+++++++||.+|||+...
T Consensus 267 TEc~tTFFNVSsstltSKwRGeSEKlvRlLFemARfyAPStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t 346 (491)
T KOG0738|consen 267 TECGTTFFNVSSSTLTSKWRGESEKLVRLLFEMARFYAPSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGT 346 (491)
T ss_pred HhhcCeEEEechhhhhhhhccchHHHHHHHHHHHHHhCCceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccc
Confidence 99999999999999999999999999986663 56554 4444 468899999999999999999753
Q ss_pred C--CCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 012000 336 P--NDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 413 (473)
Q Consensus 336 ~--~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~ 413 (473)
. .+.|+|+++||.||+||+|++|||.++|++|+|+.+.|..||+..+...... ++..++.||+.++||||+||.++|
T Consensus 347 ~e~~k~VmVLAATN~PWdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~~-~~~~~~~lae~~eGySGaDI~nvC 425 (491)
T KOG0738|consen 347 LENSKVVMVLAATNFPWDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVELD-DPVNLEDLAERSEGYSGADITNVC 425 (491)
T ss_pred cccceeEEEEeccCCCcchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccCC-CCccHHHHHHHhcCCChHHHHHHH
Confidence 2 2348999999999999999999999999999999999999999999887665 788999999999999999999999
Q ss_pred HHHHHHhHHHhcccc-----cccc-cccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 414 EEAAMMPIRELGTNI-----LTVK-ANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 414 ~~A~~~a~~~~~~~~-----~~~~-~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
++|.+.++||.-... .... ..-..|+++.||+.|+++++|+++..++++|++|.++||+
T Consensus 426 reAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSvs~~d~~k~ekW~~efGS 490 (491)
T KOG0738|consen 426 REASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSVSAADLEKYEKWMDEFGS 490 (491)
T ss_pred HHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCCCHHHHHHHHHHHHHhcC
Confidence 999999999754311 1111 1112689999999999999999999999999999999997
No 3
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.9e-48 Score=399.71 Aligned_cols=254 Identities=39% Similarity=0.693 Sum_probs=233.1
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
+.++.+.|+++|+||+|++++|+.|++.|.+|+.+|+.|.+.+ .||+|||||||||||||++|+|+|++++.+|+.|.+
T Consensus 422 Re~~ve~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkg 501 (693)
T KOG0730|consen 422 REILVEMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKG 501 (693)
T ss_pred hheeccCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccC
Confidence 3556788999999999999999999999999999999999886 899999999999999999999999999999999999
Q ss_pred Cccchhhhhhhhhhhccee-----------eeecc---ccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 283 SSLTSKWVGEGEKLVRTLF-----------MIDSI---MSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 283 ~~l~~~~~g~~~~~~~~if-----------~IDei---~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
.+++++|+|++++.++.+| ++||| ...|+...++..+|++++||.+|||+.. .++|+|||+||+
T Consensus 502 pEL~sk~vGeSEr~ir~iF~kAR~~aP~IiFfDEiDsi~~~R~g~~~~v~~RVlsqLLtEmDG~e~--~k~V~ViAATNR 579 (693)
T KOG0730|consen 502 PELFSKYVGESERAIREVFRKARQVAPCIIFFDEIDALAGSRGGSSSGVTDRVLSQLLTEMDGLEA--LKNVLVIAATNR 579 (693)
T ss_pred HHHHHHhcCchHHHHHHHHHHHhhcCCeEEehhhHHhHhhccCCCccchHHHHHHHHHHHcccccc--cCcEEEEeccCC
Confidence 9999999999999997655 35555 4566666668899999999999999975 456999999999
Q ss_pred CCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 349 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 349 ~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
|+.||+|++| ||++.||||+||.+.|.+||+.++++.++. ++.++..||+.|+||||+||.++|++|+..|+++.-.
T Consensus 580 pd~ID~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~~-~~vdl~~La~~T~g~SGAel~~lCq~A~~~a~~e~i~ 658 (693)
T KOG0730|consen 580 PDMIDPALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPFS-EDVDLEELAQATEGYSGAEIVAVCQEAALLALRESIE 658 (693)
T ss_pred hhhcCHHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCCC-ccccHHHHHHHhccCChHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999 999999999999999999999999998887 6689999999999999999999999999999998432
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHh
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNRE 469 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~ 469 (473)
...|+.+||++|++..+|+++.++++.|++|...
T Consensus 659 ---------a~~i~~~hf~~al~~~r~s~~~~~~~~Ye~fa~~ 692 (693)
T KOG0730|consen 659 ---------ATEITWQHFEEALKAVRPSLTSELLEKYEDFAAR 692 (693)
T ss_pred ---------cccccHHHHHHHHHhhcccCCHHHHHHHHHHhhc
Confidence 4679999999999999999999999999999764
No 4
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4e-47 Score=367.13 Aligned_cols=235 Identities=44% Similarity=0.701 Sum_probs=210.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
--+++.|.++++||+|+++++++|+|.|.+|+.+|++|... ..||+|+|||||||||||+||+|+|++.+++|+.|.++
T Consensus 140 M~v~e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgS 219 (406)
T COG1222 140 MEVEEKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGS 219 (406)
T ss_pred eeeccCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccH
Confidence 34678899999999999999999999999999999999987 48999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhccee-----------eeecccc---ccccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVRTLF-----------MIDSIMS---TRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~~if-----------~IDei~~---~~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
+|+.+|+|++.+.++.+| |||||+. .|.+. .+..-.|.+-+||.+|||+.. .++|-||+||
T Consensus 220 ElVqKYiGEGaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~--~~nvKVI~AT 297 (406)
T COG1222 220 ELVQKYIGEGARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDP--RGNVKVIMAT 297 (406)
T ss_pred HHHHHHhccchHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCC--CCCeEEEEec
Confidence 999999999988887555 5666654 44432 233345778899999999964 5669999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+++.|||||+| ||++.|+||+|+.+.|.+||+.|.++..+. .+.+++.||+.|+|+||+||+++|.+|.+.|+|+-
T Consensus 298 NR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l~-~dvd~e~la~~~~g~sGAdlkaictEAGm~AiR~~ 376 (406)
T COG1222 298 NRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNLA-DDVDLELLARLTEGFSGADLKAICTEAGMFAIRER 376 (406)
T ss_pred CCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccCc-cCcCHHHHHHhcCCCchHHHHHHHHHHhHHHHHhc
Confidence 999999999999 999999999999999999999999998876 78999999999999999999999999999999984
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCC
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
. ..+|++||.+|..++..
T Consensus 377 R-----------~~Vt~~DF~~Av~KV~~ 394 (406)
T COG1222 377 R-----------DEVTMEDFLKAVEKVVK 394 (406)
T ss_pred c-----------CeecHHHHHHHHHHHHh
Confidence 3 45999999999998754
No 5
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.4e-46 Score=376.28 Aligned_cols=265 Identities=36% Similarity=0.599 Sum_probs=230.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
+-...+|.|+|+||+|+++++.+|..++.+|.++|++|..++ .+|.|||||||||||||.||+|+|+|.+.+|+.|.+.
T Consensus 500 EGF~tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGP 579 (802)
T KOG0733|consen 500 EGFATVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGP 579 (802)
T ss_pred ccceecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCH
Confidence 334457999999999999999999999999999999999774 6789999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhccee-----------eeecc---ccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 284 SLTSKWVGEGEKLVRTLF-----------MIDSI---MSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~~if-----------~IDei---~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
+|+++|+|++++.++.+| ++||+ ...|+......+.|++++||.+|||+..+ .+|+|||+||+|
T Consensus 580 ELlNkYVGESErAVR~vFqRAR~saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtElDGl~~R--~gV~viaATNRP 657 (802)
T KOG0733|consen 580 ELLNKYVGESERAVRQVFQRARASAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTELDGLEER--RGVYVIAATNRP 657 (802)
T ss_pred HHHHHHhhhHHHHHHHHHHHhhcCCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHhcccccc--cceEEEeecCCC
Confidence 999999999999987655 45555 55677777888999999999999999654 459999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCC-ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHHh
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSL-PGGDLERLVRETE--GYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
+-+|||++| ||++.+|+++|+.++|..||+.+.++....+ ++.+++.||..+. ||||+||..||++|.+.|+++.
T Consensus 658 DiIDpAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~pl~~dVdl~eia~~~~c~gftGADLaaLvreAsi~AL~~~ 737 (802)
T KOG0733|consen 658 DIIDPAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKPPLSSDVDLDEIARNTKCEGFTGADLAALVREASILALRES 737 (802)
T ss_pred cccchhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCCCCCcccCHHHHhhcccccCCchhhHHHHHHHHHHHHHHHH
Confidence 999999999 9999999999999999999999999544333 6789999998866 9999999999999999999875
Q ss_pred ccccc-cccccc----CCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhC
Q 012000 425 GTNIL-TVKANQ----LRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471 (473)
Q Consensus 425 ~~~~~-~~~~~~----~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g 471 (473)
..... ...... .-.+|+.||++|+++++||+++.+-+.|+..+..+|
T Consensus 738 ~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~dr~~Yd~l~k~~~ 789 (802)
T KOG0733|consen 738 LFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERDRKKYDRLNKSRS 789 (802)
T ss_pred HhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHHHHHHHHHhhhhc
Confidence 44211 111111 235889999999999999999999999999888777
No 6
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.8e-46 Score=373.46 Aligned_cols=283 Identities=58% Similarity=0.915 Sum_probs=265.2
Q ss_pred cCCCcChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH
Q 012000 190 AGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV 269 (473)
Q Consensus 190 ~~~~~~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~ai 269 (473)
....++..+.+.+.++|++..+++.|+|+.|++.+|+.+.+++++|+.++.+|.+++.|.+++||+||||||||+|++||
T Consensus 127 ~~~~~~~~~~~~i~~EI~~~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~ai 206 (428)
T KOG0740|consen 127 KVKEVDETLIEGIRNEIGDTLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAI 206 (428)
T ss_pred hhccccchhhHHHHHHHhccCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHH
Confidence 34566778888899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCcEEEEecCccchhhhhhhhhhhccee-----------eeeccc---cccccCcchHHHHHHHHHHHHhcCcCCC
Q 012000 270 ASESQATFFNVSASSLTSKWVGEGEKLVRTLF-----------MIDSIM---STRMANENDASRRLKSEFLIQFDGVTSN 335 (473)
Q Consensus 270 A~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if-----------~IDei~---~~~~~~~~~~~~~~~~~ll~~ldg~~~~ 335 (473)
|.|+++.|+.++++.+.++|+|++++.++.+| +|||++ ..+.+.+++..++++.++|.++++....
T Consensus 207 AsE~~atff~iSassLtsK~~Ge~eK~vralf~vAr~~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~ 286 (428)
T KOG0740|consen 207 ATESGATFFNISASSLTSKYVGESEKLVRALFKVARSLQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSA 286 (428)
T ss_pred HhhhcceEeeccHHHhhhhccChHHHHHHHHHHHHHhcCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCC
Confidence 99999999999999999999999999998766 366665 4667788899999999999999999988
Q ss_pred CCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 012000 336 PNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 415 (473)
Q Consensus 336 ~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~ 415 (473)
+.++|+||||||.||.+|.+++|||.+++++|+|+.++|..+|..++++.+..+.+.++..|++.|+||+++||.++|++
T Consensus 287 ~~drvlvigaTN~P~e~Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~~~l~~~d~~~l~~~Tegysgsdi~~l~ke 366 (428)
T KOG0740|consen 287 PDDRVLVIGATNRPWELDEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQPNGLSDLDISLLAKVTEGYSGSDITALCKE 366 (428)
T ss_pred CCCeEEEEecCCCchHHHHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCcccccHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999888899999999999999999999999999
Q ss_pred HHHHhHHHhcc--cccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 416 AAMMPIRELGT--NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 416 A~~~a~~~~~~--~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
|++.+++.+.. ..........++++..||+.+++.++|+++.+.++.|++|+.+||+
T Consensus 367 a~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~~s~~~l~~~~~~~~~fg~ 425 (428)
T KOG0740|consen 367 AAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPSVSLEGLEKYEKWDKEFGS 425 (428)
T ss_pred hhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccccCccccchhHHHhhhhcc
Confidence 99999998877 4555667788999999999999999999999999999999999996
No 7
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.5e-44 Score=351.34 Aligned_cols=261 Identities=48% Similarity=0.802 Sum_probs=233.1
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
=.|+|+||.|++.++++|++.|.+|+.+|++|... ..|++|||||||||||||++|+|+|++.++.|+.|+.+.+.++
T Consensus 87 I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~K 166 (386)
T KOG0737|consen 87 IGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTSK 166 (386)
T ss_pred ceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccchh
Confidence 46999999999999999999999999999999644 5789999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccee-----------eeecccc---ccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH
Q 012000 289 WVGEGEKLVRTLF-----------MIDSIMS---TRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 354 (473)
Q Consensus 289 ~~g~~~~~~~~if-----------~IDei~~---~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~ 354 (473)
|+|+++++++.+| +||+++. .|...+++....+.++|+..+||+..+.+.+|+|+||||+|.+||.
T Consensus 167 WfgE~eKlv~AvFslAsKl~P~iIFIDEvds~L~~R~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~DlDe 246 (386)
T KOG0737|consen 167 WFGEAQKLVKAVFSLASKLQPSIIFIDEVDSFLGQRRSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFDLDE 246 (386)
T ss_pred hHHHHHHHHHHHHhhhhhcCcceeehhhHHHHHhhcccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCccHHH
Confidence 9999999987666 4777765 5566788999999999999999999888889999999999999999
Q ss_pred HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc---ccc
Q 012000 355 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI---LTV 431 (473)
Q Consensus 355 al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~---~~~ 431 (473)
|++||+.+++++++|+..+|..|++.++++..+. ++.++..+|..|+||||+||.++|..|+..+++++-... ...
T Consensus 247 AiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~e-~~vD~~~iA~~t~GySGSDLkelC~~Aa~~~ire~~~~~~~~~d~ 325 (386)
T KOG0737|consen 247 AIIRRLPRRFHVGLPDAEQRRKILKVILKKEKLE-DDVDLDEIAQMTEGYSGSDLKELCRLAALRPIRELLVSETGLLDL 325 (386)
T ss_pred HHHHhCcceeeeCCCchhhHHHHHHHHhcccccC-cccCHHHHHHhcCCCcHHHHHHHHHHHhHhHHHHHHHhcccchhh
Confidence 9999999999999999999999999999999887 889999999999999999999999999999999875532 000
Q ss_pred -------c-------cccCCCCcHHHHHHHHHhhCCCCCHH--HHHHHHHHHHhhCC
Q 012000 432 -------K-------ANQLRPLRYEDFQKAMAVIRPSLNKS--KWEELEQWNREFGS 472 (473)
Q Consensus 432 -------~-------~~~~~~it~~df~~al~~~~ps~~~~--~~~~~~~w~~~~g~ 472 (473)
. ....++++++||.+++..+.+++..+ ....++.|++.||+
T Consensus 326 d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~~~~~~~~t~~~a~~~~~~~~~e 382 (386)
T KOG0737|consen 326 DKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVSASVAMDATRMNALKQWNELYGE 382 (386)
T ss_pred hhhhhhccCCcccccccccCcccHHHHHHHHHhhhhHHHHhhhhhHHHHHHHhhhcc
Confidence 0 01158999999999999988876544 35678899999985
No 8
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8e-44 Score=369.92 Aligned_cols=264 Identities=32% Similarity=0.559 Sum_probs=232.5
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
..+.|+|+|+||+|++++|..|.+.+.+|+.+|++|....++..|||||||||||||.+|+|+|.|+...|++|.+.+++
T Consensus 663 APKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELL 742 (953)
T KOG0736|consen 663 APKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELL 742 (953)
T ss_pred CCCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHH
Confidence 45789999999999999999999999999999999998888889999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhccee-----------eeecccc---ccc--cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 287 SKWVGEGEKLVRTLF-----------MIDSIMS---TRM--ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 287 ~~~~g~~~~~~~~if-----------~IDei~~---~~~--~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
++|+|++++++|.+| ++|||++ .|+ ....+..+|++++||.+|||+.....+.|+||||||+|+
T Consensus 743 NMYVGqSE~NVR~VFerAR~A~PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 743 NMYVGQSEENVREVFERARSAAPCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHHhcchHHHHHHHHHHhhccCCeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 999999999998655 4666655 343 335667899999999999999976778899999999999
Q ss_pred CCCHHHhc--ccccccccCCCc-HHHHHHHHHHHhccCCCCCChhhHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 351 ELDDAVLR--RLVKRIYVPLPD-ENVRRLLLKHKLKGQAFSLPGGDLERLVRETE-GYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 351 ~Ld~al~r--Rf~~~i~~~~P~-~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~-g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
.|||+++| ||++.+|+.+++ .+.+..+|+...++..++ .+.++.++|+.++ .|||+|+.+||.+|.+.|++|...
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-edVdL~eiAk~cp~~~TGADlYsLCSdA~l~AikR~i~ 901 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-EDVDLVEIAKKCPPNMTGADLYSLCSDAMLAAIKRTIH 901 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-CCcCHHHHHhhCCcCCchhHHHHHHHHHHHHHHHHHHH
Confidence 99999999 999999999985 557788889888887776 7889999999988 699999999999999999988654
Q ss_pred cccc------cccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhC
Q 012000 427 NILT------VKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471 (473)
Q Consensus 427 ~~~~------~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g 471 (473)
.+.. ......-.++++||.+++++++||++..++.+|+....+|.
T Consensus 902 ~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSvS~~EL~~ye~vr~~fs 952 (953)
T KOG0736|consen 902 DIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSVSEQELLRYEMVRAQFS 952 (953)
T ss_pred HhhhccccccccCCceEEEEHHHHHHHHHhcCCcccHHHHHHHHHHHHhhc
Confidence 3211 12223346999999999999999999999999999998884
No 9
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.2e-42 Score=348.17 Aligned_cols=261 Identities=34% Similarity=0.608 Sum_probs=225.8
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
..++++|.||+|++.+..+|.+++.+ +.+|+.|..+ ..||+|+|||||||||||+||+|||++++.+|+.+++.++++
T Consensus 183 ~~snv~f~diGG~d~~~~el~~li~~-i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivS 261 (802)
T KOG0733|consen 183 PESNVSFSDIGGLDKTLAELCELIIH-IKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVS 261 (802)
T ss_pred CCCCcchhhccChHHHHHHHHHHHHH-hcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhc
Confidence 34579999999999999999999988 8899998877 489999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccee-----------eeeccc---cccccCcchHHHHHHHHHHHHhcCcCCCC--CCcEEEEeecCCCCC
Q 012000 288 KWVGEGEKLVRTLF-----------MIDSIM---STRMANENDASRRLKSEFLIQFDGVTSNP--NDLVIVMGATNKPQE 351 (473)
Q Consensus 288 ~~~g~~~~~~~~if-----------~IDei~---~~~~~~~~~~~~~~~~~ll~~ldg~~~~~--~~~v~vI~tTn~~~~ 351 (473)
.+.|++++.++.+| +||||+ ..|...+.+..+|++.+||..||++.... +++|+||||||+|+.
T Consensus 262 GvSGESEkkiRelF~~A~~~aPcivFiDeIDAI~pkRe~aqreMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDs 341 (802)
T KOG0733|consen 262 GVSGESEKKIRELFDQAKSNAPCIVFIDEIDAITPKREEAQREMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDS 341 (802)
T ss_pred ccCcccHHHHHHHHHHHhccCCeEEEeecccccccchhhHHHHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcc
Confidence 99999999997655 455554 56666778889999999999999997653 478999999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
||++|+| ||++.|.+..|+..+|.+||+.++++..+. .+.++..||..|+||.|+||.+||.+|+..|++|+.....
T Consensus 342 lDpaLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-g~~d~~qlA~lTPGfVGADL~AL~~~Aa~vAikR~ld~~~ 420 (802)
T KOG0733|consen 342 LDPALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-GDFDFKQLAKLTPGFVGADLMALCREAAFVAIKRILDQSS 420 (802)
T ss_pred cCHHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-CCcCHHHHHhcCCCccchhHHHHHHHHHHHHHHHHhhccc
Confidence 9999999 999999999999999999999999988877 4889999999999999999999999999999998743100
Q ss_pred ----------c------------c-----------------------------ccccCCCCcHHHHHHHHHhhCCCCCHH
Q 012000 430 ----------T------------V-----------------------------KANQLRPLRYEDFQKAMAVIRPSLNKS 458 (473)
Q Consensus 430 ----------~------------~-----------------------------~~~~~~~it~~df~~al~~~~ps~~~~ 458 (473)
. + ...+.-.|+++||++|+..++|+..+|
T Consensus 421 ~p~~~~~~~ed~~~~~~~~d~S~i~~~~~~~~~~~ld~v~~~~i~~~~d~~S~E~~~~L~i~~eDF~~Al~~iQPSakRE 500 (802)
T KOG0733|consen 421 SPLTKVPISEDSSNKDAEEDQSSIKITSNAERPLELDRVVQDAILNNPDPLSKELLEGLSIKFEDFEEALSKIQPSAKRE 500 (802)
T ss_pred CccccCCccccccCCCccchhhhhhcCCcccccccHHHHHHHHHHhCCCCcChHHhccceecHHHHHHHHHhcCcchhcc
Confidence 0 0 001123588999999999999999988
Q ss_pred HHHHHH--HHHHhhC
Q 012000 459 KWEELE--QWNREFG 471 (473)
Q Consensus 459 ~~~~~~--~w~~~~g 471 (473)
-+.... .|.+..|
T Consensus 501 GF~tVPdVtW~dIGa 515 (802)
T KOG0733|consen 501 GFATVPDVTWDDIGA 515 (802)
T ss_pred cceecCCCChhhccc
Confidence 766655 3777665
No 10
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=100.00 E-value=2.9e-38 Score=349.10 Aligned_cols=263 Identities=38% Similarity=0.647 Sum_probs=227.4
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
..+.|.++|+||+|++.+|+.|++.+.+|+.++++|..+. .+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 444 ~~~~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l 523 (733)
T TIGR01243 444 LVEVPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEI 523 (733)
T ss_pred hccccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHH
Confidence 3456789999999999999999999999999999998764 678999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhc-----------ceeeeeccccccc---c-CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 286 TSKWVGEGEKLVR-----------TLFMIDSIMSTRM---A-NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 286 ~~~~~g~~~~~~~-----------~if~IDei~~~~~---~-~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
.++|+|+++..++ ++++|||++.... . .......+++++||.+|+++.. ..+++||+|||+|+
T Consensus 524 ~~~~vGese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~--~~~v~vI~aTn~~~ 601 (733)
T TIGR01243 524 LSKWVGESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQE--LSNVVVIAATNRPD 601 (733)
T ss_pred hhcccCcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccC--CCCEEEEEeCCChh
Confidence 9999999887664 4666898876432 1 2334567899999999999864 45699999999999
Q ss_pred CCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc
Q 012000 351 ELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 428 (473)
Q Consensus 351 ~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~ 428 (473)
.||++++| ||++.|++|+|+.++|.+||+.++.+..+. ++.++..||..|+||||+||.++|++|++.++++.....
T Consensus 602 ~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~~-~~~~l~~la~~t~g~sgadi~~~~~~A~~~a~~~~~~~~ 680 (733)
T TIGR01243 602 ILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPLA-EDVDLEELAEMTEGYTGADIEAVCREAAMAALRESIGSP 680 (733)
T ss_pred hCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 99999998 999999999999999999999998877664 677899999999999999999999999999999753311
Q ss_pred cc--c-----ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 429 LT--V-----KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 429 ~~--~-----~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
.. . .......|+++||..|+++++|++++++++.|++|.++||.
T Consensus 681 ~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps~~~~~~~~~~~~~~~~~~ 731 (733)
T TIGR01243 681 AKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPSVSKEDMLRYERLAKELKR 731 (733)
T ss_pred cchhhhcccccccccCcccHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcc
Confidence 10 0 01123579999999999999999999999999999999984
No 11
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1e-36 Score=323.52 Aligned_cols=244 Identities=43% Similarity=0.712 Sum_probs=217.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTG-LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~-~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
.+....|.++|+|++|++.+++.+++.+.+|+.+++.|.. ...+++|+|||||||||||+||+++|.+++.+|+.+..+
T Consensus 231 ~~~~~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~ 310 (494)
T COG0464 231 GVLFEDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS 310 (494)
T ss_pred ccccCCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH
Confidence 4556788999999999999999999999999999999887 457788999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhcc-----------eeeeecccccc---ccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 284 SLTSKWVGEGEKLVRT-----------LFMIDSIMSTR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~~-----------if~IDei~~~~---~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
+++++|+|+++++++. +++|||++... ....+....+++++++.+|+++... ..|+||+|||+|
T Consensus 311 ~l~sk~vGesek~ir~~F~~A~~~~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~--~~v~vi~aTN~p 388 (494)
T COG0464 311 ELLSKWVGESEKNIRELFEKARKLAPSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKA--EGVLVIAATNRP 388 (494)
T ss_pred HHhccccchHHHHHHHHHHHHHcCCCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCcc--CceEEEecCCCc
Confidence 9999999999998864 45588877644 3344444579999999999999654 449999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCC-CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFS-LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
+.+|++++| ||++.++||+||..+|..+|+.++.+.... ..+.++..+++.|+||+|+||..+|++|++.++++..
T Consensus 389 ~~ld~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~~~~~~~~~~l~~~t~~~sgadi~~i~~ea~~~~~~~~~- 467 (494)
T COG0464 389 DDLDPALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPPLAEDVDLEELAEITEGYSGADIAALVREAALEALREAR- 467 (494)
T ss_pred cccCHhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCcchhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHhc-
Confidence 999999999 999999999999999999999999976553 4678999999999999999999999999999998853
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQW 466 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w 466 (473)
...|+++||..|++.++|+++ |++|
T Consensus 468 ---------~~~~~~~~~~~a~~~~~p~~~------~~~~ 492 (494)
T COG0464 468 ---------RREVTLDDFLDALKKIKPSVT------YEEW 492 (494)
T ss_pred ---------cCCccHHHHHHHHHhcCCCCC------hhhc
Confidence 357999999999999999988 8888
No 12
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.8e-37 Score=308.97 Aligned_cols=227 Identities=36% Similarity=0.553 Sum_probs=199.0
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
.+++|+||-|.+++|++|.|.|. .++.|.-|+.+ ++.|+||||.||||||||+||||+|.|.+++||..+++++...|
T Consensus 299 ~nv~F~dVkG~DEAK~ELeEiVe-fLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~ 377 (752)
T KOG0734|consen 299 KNVTFEDVKGVDEAKQELEEIVE-FLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMF 377 (752)
T ss_pred cccccccccChHHHHHHHHHHHH-HhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhh
Confidence 37899999999999999999886 56777778776 57789999999999999999999999999999999999999999
Q ss_pred hhhhhhhhc-----------ceeeeecccc---ccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 290 VGEGEKLVR-----------TLFMIDSIMS---TRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 290 ~g~~~~~~~-----------~if~IDei~~---~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
+|...++++ +|++||||+. .|........+..+++||.+|||+..+ ..|+|||+||.|+.||+|
T Consensus 378 VGvGArRVRdLF~aAk~~APcIIFIDEiDavG~kR~~~~~~y~kqTlNQLLvEmDGF~qN--eGiIvigATNfpe~LD~A 455 (752)
T KOG0734|consen 378 VGVGARRVRDLFAAAKARAPCIIFIDEIDAVGGKRNPSDQHYAKQTLNQLLVEMDGFKQN--EGIIVIGATNFPEALDKA 455 (752)
T ss_pred hcccHHHHHHHHHHHHhcCCeEEEEechhhhcccCCccHHHHHHHHHHHHHHHhcCcCcC--CceEEEeccCChhhhhHH
Confidence 998877775 4556888765 444444446678899999999999765 459999999999999999
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccccc
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 433 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~ 433 (473)
|.| ||+++|.+|.||...|.+||+.|+.+..+. .+.|+.-||+-|.||+|+||.+|++.|+..|....
T Consensus 456 L~RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~~-~~VD~~iiARGT~GFsGAdLaNlVNqAAlkAa~dg--------- 525 (752)
T KOG0734|consen 456 LTRPGRFDRHVTVPLPDVRGRTEILKLYLSKIPLD-EDVDPKIIARGTPGFSGADLANLVNQAALKAAVDG--------- 525 (752)
T ss_pred hcCCCccceeEecCCCCcccHHHHHHHHHhcCCcc-cCCCHhHhccCCCCCchHHHHHHHHHHHHHHHhcC---------
Confidence 999 999999999999999999999999997765 68899999999999999999999999999986542
Q ss_pred ccCCCCcHHHHHHHHHhhC
Q 012000 434 NQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 434 ~~~~~it~~df~~al~~~~ 452 (473)
...++|.||+.|-.++-
T Consensus 526 --a~~VtM~~LE~akDrIl 542 (752)
T KOG0734|consen 526 --AEMVTMKHLEFAKDRIL 542 (752)
T ss_pred --cccccHHHHhhhhhhee
Confidence 24599999999988764
No 13
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=9.3e-36 Score=276.22 Aligned_cols=228 Identities=28% Similarity=0.457 Sum_probs=194.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
.++++|+||+|++++|+..+-.+ ..+..|+.|..|. |+++|||||||||||++|+|+|++++.+++.+.+..++..+
T Consensus 115 ~~~it~ddViGqEeAK~kcrli~-~yLenPe~Fg~WA--PknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGeh 191 (368)
T COG1223 115 ISDITLDDVIGQEEAKRKCRLIM-EYLENPERFGDWA--PKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEH 191 (368)
T ss_pred hccccHhhhhchHHHHHHHHHHH-HHhhChHHhcccC--cceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHH
Confidence 46899999999999999987554 4567888888775 68999999999999999999999999999999999999999
Q ss_pred hhhhhhhh-----------cceeeeeccccccccC----cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH
Q 012000 290 VGEGEKLV-----------RTLFMIDSIMSTRMAN----ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 354 (473)
Q Consensus 290 ~g~~~~~~-----------~~if~IDei~~~~~~~----~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~ 354 (473)
+|++.+.+ +++++||+++...-+. -.+....+++.||.+|||+.. +..|+.||+||+|+.||+
T Consensus 192 VGdgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~e--neGVvtIaaTN~p~~LD~ 269 (368)
T COG1223 192 VGDGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKE--NEGVVTIAATNRPELLDP 269 (368)
T ss_pred hhhHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCccc--CCceEEEeecCChhhcCH
Confidence 99876655 4788899987543221 122335688999999999974 566999999999999999
Q ss_pred HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH-HHHHHHHHhHHHhccccccccc
Q 012000 355 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA-LCEEAAMMPIRELGTNILTVKA 433 (473)
Q Consensus 355 al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~-l~~~A~~~a~~~~~~~~~~~~~ 433 (473)
++++||...|+|.+|+.++|..|++.+++..++++ +..++.++..|.|+||+||.. +++.|.+.|+.+-.
T Consensus 270 aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plpv-~~~~~~~~~~t~g~SgRdikekvlK~aLh~Ai~ed~-------- 340 (368)
T COG1223 270 AIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLPV-DADLRYLAAKTKGMSGRDIKEKVLKTALHRAIAEDR-------- 340 (368)
T ss_pred HHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCcc-ccCHHHHHHHhCCCCchhHHHHHHHHHHHHHHHhch--------
Confidence 99999999999999999999999999999988875 556999999999999999976 67778888888732
Q ss_pred ccCCCCcHHHHHHHHHhhCCC
Q 012000 434 NQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 434 ~~~~~it~~df~~al~~~~ps 454 (473)
..|+.+||++|+++.++.
T Consensus 341 ---e~v~~edie~al~k~r~~ 358 (368)
T COG1223 341 ---EKVEREDIEKALKKERKR 358 (368)
T ss_pred ---hhhhHHHHHHHHHhhccc
Confidence 358899999999986654
No 14
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=100.00 E-value=2.8e-35 Score=301.09 Aligned_cols=235 Identities=37% Similarity=0.599 Sum_probs=203.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.+.+.|+++|+||+|++.+++.|++.+.+|+.++++|..++ .+++|+|||||||||||++|+++|++++.+|+.+.+++
T Consensus 135 ~~~~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~ 214 (398)
T PTZ00454 135 QMSEKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSE 214 (398)
T ss_pred cccCCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHH
Confidence 35668999999999999999999999999999999998764 67899999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhh-----------cceeeeeccccccc---c---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLV-----------RTLFMIDSIMSTRM---A---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~-----------~~if~IDei~~~~~---~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+..+|+|+....+ +.+++|||++.... + +.+....+.+.+++..++++.. ..+++||+|||
T Consensus 215 l~~k~~ge~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~--~~~v~VI~aTN 292 (398)
T PTZ00454 215 FVQKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQ--TTNVKVIMATN 292 (398)
T ss_pred HHHHhcchhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCC--CCCEEEEEecC
Confidence 9999988876544 35677999876432 1 1223345678889999998754 34589999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+++.||++++| ||++.|+|++|+.++|..||+.++.+.++. .+.++..++..|+||||+||.++|++|.+.|+++..
T Consensus 293 ~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l~-~dvd~~~la~~t~g~sgaDI~~l~~eA~~~A~r~~~ 371 (398)
T PTZ00454 293 RADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNLS-EEVDLEDFVSRPEKISAADIAAICQEAGMQAVRKNR 371 (398)
T ss_pred CchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCC
Confidence 99999999998 999999999999999999999999887765 678999999999999999999999999999998732
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhCCC
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~ps 454 (473)
..|+++||.+|++.+...
T Consensus 372 -----------~~i~~~df~~A~~~v~~~ 389 (398)
T PTZ00454 372 -----------YVILPKDFEKGYKTVVRK 389 (398)
T ss_pred -----------CccCHHHHHHHHHHHHhc
Confidence 469999999999997554
No 15
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.6e-36 Score=275.35 Aligned_cols=230 Identities=40% Similarity=0.662 Sum_probs=203.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
++.|.+++.||+|++-.|++++|++.+|+.+.+++... ..||+|+|||||||||||+||+|+|+...+.|+.|.+++++
T Consensus 147 ~ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefv 226 (408)
T KOG0727|consen 147 DEKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFV 226 (408)
T ss_pred CCCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHH
Confidence 46789999999999999999999999999999999877 48999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhcce-----------eeeecccc---ccccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 287 SKWVGEGEKLVRTL-----------FMIDSIMS---TRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 287 ~~~~g~~~~~~~~i-----------f~IDei~~---~~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
.+|.|++...++.+ ++||+++. .+-+. .+....+++-+||++|||+.. ..+|-||.+||+.
T Consensus 227 qkylgegprmvrdvfrlakenapsiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq--~~nvkvimatnra 304 (408)
T KOG0727|consen 227 QKYLGEGPRMVRDVFRLAKENAPSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQ--TTNVKVIMATNRA 304 (408)
T ss_pred HHHhccCcHHHHHHHHHHhccCCcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCc--ccceEEEEecCcc
Confidence 99999998877654 45777754 34333 333446788899999999964 4559999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+.|||+++| |+++.|+||+||..++.-+|..+..+..+. ++.+++.+..+-+..||+||.++|++|.+.|+|+..
T Consensus 305 dtldpallrpgrldrkiefplpdrrqkrlvf~titskm~ls-~~vdle~~v~rpdkis~adi~aicqeagm~avr~nr-- 381 (408)
T KOG0727|consen 305 DTLDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNLS-DEVDLEDLVARPDKISGADINAICQEAGMLAVRENR-- 381 (408)
T ss_pred cccCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccCC-cccCHHHHhcCccccchhhHHHHHHHHhHHHHHhcc--
Confidence 999999999 999999999999999999999999998876 788999999999999999999999999999999843
Q ss_pred ccccccccCCCCcHHHHHHHHHhh
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~ 451 (473)
-.+...||+++.+..
T Consensus 382 ---------yvvl~kd~e~ay~~~ 396 (408)
T KOG0727|consen 382 ---------YVVLQKDFEKAYKTV 396 (408)
T ss_pred ---------eeeeHHHHHHHHHhh
Confidence 247789999998874
No 16
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-35 Score=272.79 Aligned_cols=238 Identities=37% Similarity=0.625 Sum_probs=207.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
-.|++.|..+++-|.|++.+++.++|.+.+|..+|++|..++ ..|+|+|||||||||||.||+++|....+.|+.|+++
T Consensus 136 MmVeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahht~c~firvsgs 215 (404)
T KOG0728|consen 136 MMVEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHHTDCTFIRVSGS 215 (404)
T ss_pred HhhhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhhcceEEEEechH
Confidence 357889999999999999999999999999999999999774 4579999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhccee-----------e---eeccccccccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVRTLF-----------M---IDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~~if-----------~---IDei~~~~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
+++.+|+|+....++.+| + ||+|.+.|.++ .+....+..-+||+++||+.. ..++-||.+|
T Consensus 216 elvqk~igegsrmvrelfvmarehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfea--tknikvimat 293 (404)
T KOG0728|consen 216 ELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEA--TKNIKVIMAT 293 (404)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhcccccc--ccceEEEEec
Confidence 999999999988887655 4 45555555432 334445777899999999965 4559999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+.+-||+|++| |+++.|+||+|+.+.|.+|++.+-.+.++. ...++..+|+...|.||++++.+|.+|.+.|+|+.
T Consensus 294 nridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~-rgi~l~kiaekm~gasgaevk~vcteagm~alrer 372 (404)
T KOG0728|consen 294 NRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT-RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRER 372 (404)
T ss_pred cccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHh
Confidence 999999999999 999999999999999999999998887664 56789999999999999999999999999999984
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCCCCC
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLN 456 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~ 456 (473)
.- .+|++||+-|..++-..-+
T Consensus 373 rv-----------hvtqedfemav~kvm~k~~ 393 (404)
T KOG0728|consen 373 RV-----------HVTQEDFEMAVAKVMQKDS 393 (404)
T ss_pred hc-----------cccHHHHHHHHHHHHhccc
Confidence 43 4899999999988654433
No 17
>CHL00195 ycf46 Ycf46; Provisional
Probab=100.00 E-value=7.2e-35 Score=304.04 Aligned_cols=242 Identities=24% Similarity=0.334 Sum_probs=203.8
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~ 290 (473)
++++|+||+|++.+|+.|.+....... .....+..+++|+|||||||||||++|+++|++++.+|+.++++.+.++|+
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~--~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~v 300 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSK--QASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIV 300 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhH--HHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhccccc
Confidence 578999999999999999876542211 111123467899999999999999999999999999999999999999999
Q ss_pred hhhhhhhc-----------ceeeeeccccccc----cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 291 GEGEKLVR-----------TLFMIDSIMSTRM----ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 291 g~~~~~~~-----------~if~IDei~~~~~----~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
|+++..++ +|++|||++.... .++.+...+++..|+..|+.. ..+|+||+|||+++.||++
T Consensus 301 Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~----~~~V~vIaTTN~~~~Ld~a 376 (489)
T CHL00195 301 GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEK----KSPVFVVATANNIDLLPLE 376 (489)
T ss_pred ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcC----CCceEEEEecCChhhCCHH
Confidence 98776554 5667999976432 234556778889999988743 4569999999999999999
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCC-CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccc
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFS-LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVK 432 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~-l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~ 432 (473)
++| ||++.+++++|+.++|.+||+.++.+.... ..+.++..||..|+||||+||.++|.+|+..|+.+
T Consensus 377 llR~GRFD~~i~v~lP~~~eR~~Il~~~l~~~~~~~~~~~dl~~La~~T~GfSGAdI~~lv~eA~~~A~~~--------- 447 (489)
T CHL00195 377 ILRKGRFDEIFFLDLPSLEEREKIFKIHLQKFRPKSWKKYDIKKLSKLSNKFSGAEIEQSIIEAMYIAFYE--------- 447 (489)
T ss_pred HhCCCcCCeEEEeCCcCHHHHHHHHHHHHhhcCCCcccccCHHHHHhhcCCCCHHHHHHHHHHHHHHHHHc---------
Confidence 998 999999999999999999999999886433 35788999999999999999999999999988754
Q ss_pred cccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhh
Q 012000 433 ANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQWNREF 470 (473)
Q Consensus 433 ~~~~~~it~~df~~al~~~~ps--~~~~~~~~~~~w~~~~ 470 (473)
.++++.+||..|++.+.|. ...++++.+++|....
T Consensus 448 ---~~~lt~~dl~~a~~~~~Pls~~~~e~i~~~~~Wa~~~ 484 (489)
T CHL00195 448 ---KREFTTDDILLALKQFIPLAQTEKEQIEALQNWASSG 484 (489)
T ss_pred ---CCCcCHHHHHHHHHhcCCCcccCHHHHHHHHHHHHcC
Confidence 2569999999999999997 5788999999999864
No 18
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=312.81 Aligned_cols=232 Identities=37% Similarity=0.597 Sum_probs=201.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
..+.|+|.||+|.+++|++|.|+|. .+++|+.|..+ .+.|+|+||+||||||||+||+|+|.|.++||+.+++++++.
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~-fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE 382 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVK-FLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVE 382 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHH-HhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHH
Confidence 3456999999999999999999986 57888888876 588999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhh-----------cceeeeecccc---ccc----cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 288 KWVGEGEKLV-----------RTLFMIDSIMS---TRM----ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 288 ~~~g~~~~~~-----------~~if~IDei~~---~~~----~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
.++|....++ +++++||+|+. .+. .+.+......+++||.+|||.... +.|+|+++||++
T Consensus 383 ~~~g~~asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~--~~vi~~a~tnr~ 460 (774)
T KOG0731|consen 383 MFVGVGASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETS--KGVIVLAATNRP 460 (774)
T ss_pred HhcccchHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCC--CcEEEEeccCCc
Confidence 8887755555 45666777754 442 234555677899999999999754 669999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+-||+|++| ||++.|++++|+...|..|++.|+++..+..++.++..||.+|+||+|+||.++|++|+..|.|+-.
T Consensus 461 d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~~e~~dl~~~a~~t~gf~gadl~n~~neaa~~a~r~~~-- 538 (774)
T KOG0731|consen 461 DILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLDDEDVDLSKLASLTPGFSGADLANLCNEAALLAARKGL-- 538 (774)
T ss_pred cccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCCcchhhHHHHHhcCCCCcHHHHHhhhhHHHHHHHHhcc--
Confidence 999999999 9999999999999999999999999988876788999999999999999999999999999998732
Q ss_pred ccccccccCCCCcHHHHHHHHHhhCCC
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~ps 454 (473)
..|+..||+.|++++.-.
T Consensus 539 ---------~~i~~~~~~~a~~Rvi~G 556 (774)
T KOG0731|consen 539 ---------REIGTKDLEYAIERVIAG 556 (774)
T ss_pred ---------CccchhhHHHHHHHHhcc
Confidence 458999999999965443
No 19
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.6e-35 Score=302.23 Aligned_cols=247 Identities=34% Similarity=0.552 Sum_probs=208.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
..+.|+||.|+.++|+.|.+.+.+|.++|.+|.... +.+.|||||||||||||+||-++|..++..|++|.++++.++|
T Consensus 662 tgi~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~Ky 741 (952)
T KOG0735|consen 662 TGIRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKY 741 (952)
T ss_pred CCCCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHH
Confidence 459999999999999999999999999999999763 5568999999999999999999999999999999999999999
Q ss_pred hhhhhhhhccee-----------e---eeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 290 VGEGEKLVRTLF-----------M---IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 290 ~g~~~~~~~~if-----------~---IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
+|.++..+|.+| + +|+|.+.|+....+..+|++++||.+|||... -++|+|+|+|.+|+.||||
T Consensus 742 IGaSEq~vR~lF~rA~~a~PCiLFFDEfdSiAPkRGhDsTGVTDRVVNQlLTelDG~Eg--l~GV~i~aaTsRpdliDpA 819 (952)
T KOG0735|consen 742 IGASEQNVRDLFERAQSAKPCILFFDEFDSIAPKRGHDSTGVTDRVVNQLLTELDGAEG--LDGVYILAATSRPDLIDPA 819 (952)
T ss_pred hcccHHHHHHHHHHhhccCCeEEEeccccccCcccCCCCCCchHHHHHHHHHhhccccc--cceEEEEEecCCccccCHh
Confidence 999999987655 3 45555677777888999999999999999975 4669999999999999999
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccccc
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 433 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~ 433 (473)
++| |+++.+++++|+..+|.+|++.+....... ++.+++.+|..|+||||+||..|+-.|.+.|++++..... ..
T Consensus 820 LLRpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~~-~~vdl~~~a~~T~g~tgADlq~ll~~A~l~avh~~l~~~~--~~ 896 (952)
T KOG0735|consen 820 LLRPGRLDKLVYCPLPDEPERLEILQVLSNSLLKD-TDVDLECLAQKTDGFTGADLQSLLYNAQLAAVHEILKRED--EE 896 (952)
T ss_pred hcCCCccceeeeCCCCCcHHHHHHHHHHhhccCCc-cccchHHHhhhcCCCchhhHHHHHHHHHHHHHHHHHHhcC--cc
Confidence 999 999999999999999999999887665554 7889999999999999999999999999999998755221 11
Q ss_pred ccCCCCcHHHHHHHHH--hhCCCCCHHHHHH
Q 012000 434 NQLRPLRYEDFQKAMA--VIRPSLNKSKWEE 462 (473)
Q Consensus 434 ~~~~~it~~df~~al~--~~~ps~~~~~~~~ 462 (473)
+-.+.++...+..... +.+|+.+.-+-..
T Consensus 897 ~~~p~~~~~~~~si~~~~~~~~s~~~~~~~~ 927 (952)
T KOG0735|consen 897 GVVPSIDDASLESIFSDSKRKPSRSALDNRK 927 (952)
T ss_pred ccCCccchhhhhhhhhccCCCccccccchhh
Confidence 2223355555544443 4556665544333
No 20
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-36 Score=281.83 Aligned_cols=234 Identities=36% Similarity=0.628 Sum_probs=204.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
--+++.|.-++.||.|++.++++|+|.+.+|+.+|+++... ..||+|++|||+||||||.||+|+|+...++|+.+-++
T Consensus 174 mK~eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGs 253 (440)
T KOG0726|consen 174 MKVEKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGS 253 (440)
T ss_pred eecccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhH
Confidence 34678899999999999999999999999999999999977 58999999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhccee-----------eeecccc---ccccCcchH---HHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVRTLF-----------MIDSIMS---TRMANENDA---SRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~~if-----------~IDei~~---~~~~~~~~~---~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
+++.+|.|+..++++.+| +||+|+. .|-+..+.. ..+..-+||+++||+..+ +.|-||.+|
T Consensus 254 eLiQkylGdGpklvRqlF~vA~e~apSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsr--gDvKvimAT 331 (440)
T KOG0726|consen 254 ELIQKYLGDGPKLVRELFRVAEEHAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSR--GDVKVIMAT 331 (440)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcCCceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCcccc--CCeEEEEec
Confidence 999999999988887555 5777765 333322222 234556899999999764 349999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+.+.|||+++| |+++.|+||+||...+..||..|..+..+. .++.++.+...-+.+||+||+++|.+|.+.|+|+.
T Consensus 332 nrie~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl~-~dVnle~li~~kddlSGAdIkAictEaGllAlRer 410 (440)
T KOG0726|consen 332 NRIETLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTLA-EDVNLEELIMTKDDLSGADIKAICTEAGLLALRER 410 (440)
T ss_pred ccccccCHhhcCCCccccccccCCCchhhhceeEEEeecccchh-ccccHHHHhhcccccccccHHHHHHHHhHHHHHHH
Confidence 999999999999 999999999999999999999998887765 67889999988899999999999999999999984
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhC
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
. ..++++||.+|.+.+-
T Consensus 411 R-----------m~vt~~DF~ka~e~V~ 427 (440)
T KOG0726|consen 411 R-----------MKVTMEDFKKAKEKVL 427 (440)
T ss_pred H-----------hhccHHHHHHHHHHHH
Confidence 4 3489999999998753
No 21
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.2e-35 Score=271.30 Aligned_cols=244 Identities=34% Similarity=0.629 Sum_probs=212.7
Q ss_pred ChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 195 DSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 195 ~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...+...+..-.+++.|.-.++||+|++.++++|.|++++|+.+++-|..+ ..||+|+|+|||||||||++|+|.|...
T Consensus 150 P~eyDsrVkaMevDekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT 229 (424)
T KOG0652|consen 150 PSEYDSRVKAMEVDEKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQT 229 (424)
T ss_pred ChhhhhhcceeeeccCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhc
Confidence 344555566667899999999999999999999999999999999999987 5899999999999999999999999999
Q ss_pred CCcEEEEecCccchhhhhhhhhhhc-----------ceeeeecccc---ccccC---cchHHHHHHHHHHHHhcCcCCCC
Q 012000 274 QATFFNVSASSLTSKWVGEGEKLVR-----------TLFMIDSIMS---TRMAN---ENDASRRLKSEFLIQFDGVTSNP 336 (473)
Q Consensus 274 ~~~~~~v~~~~l~~~~~g~~~~~~~-----------~if~IDei~~---~~~~~---~~~~~~~~~~~ll~~ldg~~~~~ 336 (473)
+.+|+.+-++.++..|+|.+.++++ .+++||+++. .|.+. .+....+..-+||+++||+..
T Consensus 230 ~aTFLKLAgPQLVQMfIGdGAkLVRDAFaLAKEkaP~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss-- 307 (424)
T KOG0652|consen 230 NATFLKLAGPQLVQMFIGDGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSS-- 307 (424)
T ss_pred cchHHHhcchHHHhhhhcchHHHHHHHHHHhhccCCeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCC--
Confidence 9999999999999999999888775 4556777764 33332 222334667789999999965
Q ss_pred CCcEEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 337 NDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 337 ~~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
...|-||++||+.+-|||+++| |+++.|+||.|+.+.|..|++.|.++..+. ++..+++||+.|++|.|++.+++|-
T Consensus 308 ~~~vKviAATNRvDiLDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv~-~DvNfeELaRsTddFNGAQcKAVcV 386 (424)
T KOG0652|consen 308 DDRVKVIAATNRVDILDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNVS-DDVNFEELARSTDDFNGAQCKAVCV 386 (424)
T ss_pred ccceEEEeecccccccCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCCC-CCCCHHHHhhcccccCchhheeeeh
Confidence 5669999999999999999999 999999999999999999999999998876 7899999999999999999999999
Q ss_pred HHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 415 EAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 415 ~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+|.+.|+|+-. ..|+.+||.+++..+.
T Consensus 387 EAGMiALRr~a-----------tev~heDfmegI~eVq 413 (424)
T KOG0652|consen 387 EAGMIALRRGA-----------TEVTHEDFMEGILEVQ 413 (424)
T ss_pred hhhHHHHhccc-----------ccccHHHHHHHHHHHH
Confidence 99999999843 3488999999987754
No 22
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=100.00 E-value=3.2e-34 Score=294.33 Aligned_cols=240 Identities=41% Similarity=0.632 Sum_probs=205.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
..+...|.++|+||+|++++++.|++.+.+|+.++++|..++ .+++++|||||||||||++|+++|++++.+|+.++++
T Consensus 120 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~ 199 (389)
T PRK03992 120 MEVIESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 199 (389)
T ss_pred eeecCCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehH
Confidence 345677899999999999999999999999999999998774 6789999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhc-----------ceeeeecccccccc---Cc---chHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVR-----------TLFMIDSIMSTRMA---NE---NDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~-----------~if~IDei~~~~~~---~~---~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++...|+|+....++ .+++||+++..... .. .....+.+..++..++++.. ..++.||+||
T Consensus 200 ~l~~~~~g~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~--~~~v~VI~aT 277 (389)
T PRK03992 200 ELVQKFIGEGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDP--RGNVKIIAAT 277 (389)
T ss_pred HHhHhhccchHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCC--CCCEEEEEec
Confidence 999988887665543 57778988765321 11 12234556778888887753 3459999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+++.+|++++| ||+..|+|++|+.++|.+||+.++.+..+. .+.++..||..|+||+|+||.++|++|.+.|+++.
T Consensus 278 n~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~~~~la~~t~g~sgadl~~l~~eA~~~a~~~~ 356 (389)
T PRK03992 278 NRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVDLEELAELTEGASGADLKAICTEAGMFAIRDD 356 (389)
T ss_pred CChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999998 999999999999999999999999877665 45789999999999999999999999999998862
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCCCCCHH
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKS 458 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~ 458 (473)
...|+.+||.+|+..++++...+
T Consensus 357 -----------~~~i~~~d~~~A~~~~~~~~~~~ 379 (389)
T PRK03992 357 -----------RTEVTMEDFLKAIEKVMGKEEKD 379 (389)
T ss_pred -----------CCCcCHHHHHHHHHHHhcccccc
Confidence 24599999999999999876544
No 23
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.7e-34 Score=265.11 Aligned_cols=233 Identities=35% Similarity=0.587 Sum_probs=203.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
-|++.|.+++.||.|-.+.++.|+|.+.+|+.+|+.|-.+ ..||+|+|||||||||||.+|+|+|+..++.|+.|-+++
T Consensus 167 ~veekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigse 246 (435)
T KOG0729|consen 167 QVEEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSE 246 (435)
T ss_pred EeecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHH
Confidence 4778899999999999999999999999999999999877 489999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhccee-----------eeecccc---cccc---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLVRTLF-----------MIDSIMS---TRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~~~if-----------~IDei~~---~~~~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
++.+|+|+....++.+| ++|+++. .+-+ +.+....+..-+++.++||+. +.+++-|+.+||
T Consensus 247 lvqkyvgegarmvrelf~martkkaciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfd--prgnikvlmatn 324 (435)
T KOG0729|consen 247 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFD--PRGNIKVLMATN 324 (435)
T ss_pred HHHHHhhhhHHHHHHHHHHhcccceEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCC--CCCCeEEEeecC
Confidence 99999999988887544 4666654 3322 233344567788999999995 456699999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+|+.|||+++| |+++.++|.+||.+.|..||+.|.+...+. .+.-++.||..|...+|++|..+|.+|.+.|++...
T Consensus 325 rpdtldpallrpgrldrkvef~lpdlegrt~i~kihaksmsve-rdir~ellarlcpnstgaeirsvcteagmfairarr 403 (435)
T KOG0729|consen 325 RPDTLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSVE-RDIRFELLARLCPNSTGAEIRSVCTEAGMFAIRARR 403 (435)
T ss_pred CCCCcCHhhcCCcccccceeccCCcccccceeEEEeccccccc-cchhHHHHHhhCCCCcchHHHHHHHHhhHHHHHHHh
Confidence 99999999999 999999999999999999999998877765 667889999999999999999999999999988632
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhC
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+..|-.||..|+.++.
T Consensus 404 -----------k~atekdfl~av~kvv 419 (435)
T KOG0729|consen 404 -----------KVATEKDFLDAVNKVV 419 (435)
T ss_pred -----------hhhhHHHHHHHHHHHH
Confidence 3467889999998754
No 24
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=100.00 E-value=2.8e-33 Score=288.05 Aligned_cols=233 Identities=36% Similarity=0.618 Sum_probs=200.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
-+++.|+++|+||+|++.+++.|.+++.+|+.++++|.... .+++++|||||||||||++|+++|++++.+|+.+.+++
T Consensus 173 ~~~~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~se 252 (438)
T PTZ00361 173 KVDKAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSE 252 (438)
T ss_pred ccccCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecch
Confidence 46788999999999999999999999999999999998764 67899999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeeccccccc---c---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMSTRM---A---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~~~~---~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+..+|.|+....++ .+++|||++.... . +......+.+.+++..++++.. ..++.||+|||
T Consensus 253 L~~k~~Ge~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~--~~~V~VI~ATN 330 (438)
T PTZ00361 253 LIQKYLGDGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDS--RGDVKVIMATN 330 (438)
T ss_pred hhhhhcchHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcc--cCCeEEEEecC
Confidence 99989888765543 4667888875432 1 1122234566788889998753 34589999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+++.||++++| ||++.|+|++|+.++|.+||+.++.+..+. .+.++..++..++||+|+||.++|++|++.|+++.
T Consensus 331 r~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l~-~dvdl~~la~~t~g~sgAdI~~i~~eA~~~Alr~~- 408 (438)
T PTZ00361 331 RIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTLA-EDVDLEEFIMAKDELSGADIKAICTEAGLLALRER- 408 (438)
T ss_pred ChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCCC-cCcCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhc-
Confidence 99999999997 999999999999999999999999887664 56789999999999999999999999999998873
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhC
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
...|+.+||.+|+.++.
T Consensus 409 ----------r~~Vt~~D~~~A~~~v~ 425 (438)
T PTZ00361 409 ----------RMKVTQADFRKAKEKVL 425 (438)
T ss_pred ----------CCccCHHHHHHHHHHHH
Confidence 24599999999999874
No 25
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=2.8e-32 Score=285.19 Aligned_cols=228 Identities=38% Similarity=0.608 Sum_probs=198.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
...++|.|++|.+++|+.|.|.|. +++.|.-|+.. ...|+|+||+||||||||+||+|+|.+.+.||+.+++++++..
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVd-fLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVem 222 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVD-FLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 222 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHH-HHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhh
Confidence 567999999999999999999886 45556655544 5778999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhc-----------ceeeeecccc---ccc---cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 289 WVGEGEKLVR-----------TLFMIDSIMS---TRM---ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 289 ~~g~~~~~~~-----------~if~IDei~~---~~~---~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
++|.....+| +|++||+|+. .|. .+.+......++++|.+|||... +..|+||++||+|+-
T Consensus 223 fVGvGAsRVRdLF~qAkk~aP~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~--~~gviviaaTNRpdV 300 (596)
T COG0465 223 FVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGG--NEGVIVIAATNRPDV 300 (596)
T ss_pred hcCCCcHHHHHHHHHhhccCCCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCC--CCceEEEecCCCccc
Confidence 9887766654 5666888765 332 23455556789999999999974 456999999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
||+||+| ||++.|.++.||...|.+|++.|+++..+. ++.++..+|+.|.||+|+||.+++.+|+..+.|+..
T Consensus 301 lD~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l~-~~Vdl~~iAr~tpGfsGAdL~nl~NEAal~aar~n~---- 375 (596)
T COG0465 301 LDPALLRPGRFDRQILVELPDIKGREQILKVHAKNKPLA-EDVDLKKIARGTPGFSGADLANLLNEAALLAARRNK---- 375 (596)
T ss_pred chHhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCCC-CcCCHHHHhhhCCCcccchHhhhHHHHHHHHHHhcC----
Confidence 9999999 999999999999999999999999998887 788999999999999999999999999999998743
Q ss_pred ccccccCCCCcHHHHHHHHHhhC
Q 012000 430 TVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~~ 452 (473)
..|++.||.+|+.++-
T Consensus 376 -------~~i~~~~i~ea~drv~ 391 (596)
T COG0465 376 -------KEITMRDIEEAIDRVI 391 (596)
T ss_pred -------eeEeccchHHHHHHHh
Confidence 4589999999998865
No 26
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.98 E-value=1.6e-31 Score=283.17 Aligned_cols=231 Identities=38% Similarity=0.622 Sum_probs=195.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
+..|.++|+||+|++++++.|++++.. +..++.|... ..+++|+|||||||||||++|+++|.+++.+|+.++++++.
T Consensus 47 ~~~~~~~~~di~g~~~~k~~l~~~~~~-l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~ 125 (495)
T TIGR01241 47 EEKPKVTFKDVAGIDEAKEELMEIVDF-LKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFV 125 (495)
T ss_pred CCCCCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHH
Confidence 446789999999999999999998875 6777777654 56789999999999999999999999999999999999988
Q ss_pred hhhhhhhhhhh-----------cceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 287 SKWVGEGEKLV-----------RTLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 287 ~~~~g~~~~~~-----------~~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
+.+.+.....+ +.+++|||++...... .+......+++||.+|+++.. ..+++||+|||+|
T Consensus 126 ~~~~g~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~--~~~v~vI~aTn~~ 203 (495)
T TIGR01241 126 EMFVGVGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGT--NTGVIVIAATNRP 203 (495)
T ss_pred HHHhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccC--CCCeEEEEecCCh
Confidence 88877655433 3677899997653221 233445788999999999864 3459999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+.||++++| ||++.|++++|+.++|.+||+.++....+. ++.++..+|..|.||+++||.++|++|+..+.++.
T Consensus 204 ~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~~-~~~~l~~la~~t~G~sgadl~~l~~eA~~~a~~~~--- 279 (495)
T TIGR01241 204 DVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKLA-PDVDLKAVARRTPGFSGADLANLLNEAALLAARKN--- 279 (495)
T ss_pred hhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCCC-cchhHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC---
Confidence 999999998 999999999999999999999999887655 57789999999999999999999999998887652
Q ss_pred ccccccccCCCCcHHHHHHHHHhhCC
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
...|+.+||..|+..+..
T Consensus 280 --------~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 280 --------KTEITMNDIEEAIDRVIA 297 (495)
T ss_pred --------CCCCCHHHHHHHHHHHhc
Confidence 256999999999998754
No 27
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.97 E-value=4.6e-31 Score=269.60 Aligned_cols=233 Identities=41% Similarity=0.649 Sum_probs=195.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
..+.+.|.++|+||+|++++++.|++++.+|+.+++.|..++ .+++|+|||||||||||++|+++|++++.+|+.+.+.
T Consensus 111 ~~~~~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~ 190 (364)
T TIGR01242 111 MEVEERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGS 190 (364)
T ss_pred ceeccCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchH
Confidence 345577999999999999999999999999999999998764 6789999999999999999999999999999999988
Q ss_pred ccchhhhhhhhhhh-----------cceeeeecccccccc---C---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLV-----------RTLFMIDSIMSTRMA---N---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~-----------~~if~IDei~~~~~~---~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++...|+++....+ +.+++|||++..... . ......+.+..++..++++.. ..++.||+||
T Consensus 191 ~l~~~~~g~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~--~~~v~vI~tt 268 (364)
T TIGR01242 191 ELVRKYIGEGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDP--RGNVKVIAAT 268 (364)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEec
Confidence 88888887754433 347788988764321 1 122234556778888887643 3459999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+++.+|++++| ||++.|+|+.|+.++|..||+.++....+. .+.++..|+..|+||+|+||.++|.+|.+.|+++.
T Consensus 269 n~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~-~~~~~~~la~~t~g~sg~dl~~l~~~A~~~a~~~~ 347 (364)
T TIGR01242 269 NRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLA-EDVDLEAIAKMTEGASGADLKAICTEAGMFAIREE 347 (364)
T ss_pred CChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCC-ccCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC
Confidence 999999999998 999999999999999999999998776554 45689999999999999999999999999998872
Q ss_pred cccccccccccCCCCcHHHHHHHHHhh
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
...|+.+||.+|+.++
T Consensus 348 -----------~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 348 -----------RDYVTMDDFIKAVEKV 363 (364)
T ss_pred -----------CCccCHHHHHHHHHHh
Confidence 2469999999999875
No 28
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.97 E-value=1.3e-30 Score=271.71 Aligned_cols=239 Identities=29% Similarity=0.494 Sum_probs=191.1
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCc----
Q 012000 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQAT---- 276 (473)
Q Consensus 202 ~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---- 276 (473)
+...++++.|+++|+||+|++.+++.|++.+.+|+.++++|... ..+++|+|||||||||||++|+++|++++.+
T Consensus 168 ~~~l~~~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~ 247 (512)
T TIGR03689 168 VEDLVLEEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAE 247 (512)
T ss_pred HhcceeecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccc
Confidence 34456788899999999999999999999999999999999865 4678999999999999999999999998543
Q ss_pred ------EEEEecCccchhhhhhhhhhh---------------cceeeeeccccccc---cC-cchHHHHHHHHHHHHhcC
Q 012000 277 ------FFNVSASSLTSKWVGEGEKLV---------------RTLFMIDSIMSTRM---AN-ENDASRRLKSEFLIQFDG 331 (473)
Q Consensus 277 ------~~~v~~~~l~~~~~g~~~~~~---------------~~if~IDei~~~~~---~~-~~~~~~~~~~~ll~~ldg 331 (473)
|+.+..+++.++|+|+.+..+ +.+++|||++.... .+ .++...+++++||.+||+
T Consensus 248 ~~~~~~fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDg 327 (512)
T TIGR03689 248 TGDKSYFLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDG 327 (512)
T ss_pred cCCceeEEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcc
Confidence 667778888888988876544 34677898876432 21 334456788999999999
Q ss_pred cCCCCCCcEEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCC----------ChhhHHHHHH
Q 012000 332 VTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSL----------PGGDLERLVR 399 (473)
Q Consensus 332 ~~~~~~~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l----------~~~~l~~La~ 399 (473)
+... .+++||+|||+++.||++++| ||+..|+|++|+.++|.+||+.++... +.+ ...++..+++
T Consensus 328 l~~~--~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~-l~l~~~l~~~~g~~~a~~~al~~ 404 (512)
T TIGR03689 328 VESL--DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDS-LPLDADLAEFDGDREATAAALIQ 404 (512)
T ss_pred cccC--CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhcc-CCchHHHHHhcCCCHHHHHHHHH
Confidence 8643 459999999999999999999 999999999999999999999998752 222 1223333332
Q ss_pred H-----------------------------cCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 400 E-----------------------------TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 400 ~-----------------------------t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
. ++.+||++|.++|.+|...|+.+... ...+.|+++|+..|+..
T Consensus 405 ~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~-------~~~~~~~~~~l~~a~~~ 477 (512)
T TIGR03689 405 RAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHIT-------GGQVGLRIEHLLAAVLD 477 (512)
T ss_pred HHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHh-------cCCcCcCHHHHHHHHHH
Confidence 2 45688899999999988888876421 22367999999999985
No 29
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.7e-31 Score=275.91 Aligned_cols=242 Identities=37% Similarity=0.610 Sum_probs=212.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
++++ ++++|+......+++.+.+|+..+.++... ..+|+++|+|||||||||.+++++|++.++.++.+++++++.++
T Consensus 180 ~~~~-~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~ 258 (693)
T KOG0730|consen 180 PEVG-DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKF 258 (693)
T ss_pred cccc-cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhc
Confidence 5677 899999999999999999999999999866 57889999999999999999999999999999999999999999
Q ss_pred hhhhhhhhcc------------eeeeecccccccc--CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 290 VGEGEKLVRT------------LFMIDSIMSTRMA--NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 290 ~g~~~~~~~~------------if~IDei~~~~~~--~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
.|+++..++. +++||||+...+. ......+++..+++..||++. +..+++||++||+|+.||++
T Consensus 259 ~gEte~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~~e~Rv~sqlltL~dg~~--~~~~vivl~atnrp~sld~a 336 (693)
T KOG0730|consen 259 PGETESNLRKAFAEALKFQVPSIIFIDELDALCPKREGADDVESRVVSQLLTLLDGLK--PDAKVIVLAATNRPDSLDPA 336 (693)
T ss_pred ccchHHHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccchHHHHHHHHHHHHHhhCc--CcCcEEEEEecCCccccChh
Confidence 9999886654 4457777654432 222268899999999999996 34569999999999999999
Q ss_pred Hhc-ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccc
Q 012000 356 VLR-RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKAN 434 (473)
Q Consensus 356 l~r-Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~ 434 (473)
++| ||++.+.+..|+...|..|++.++++.++. ++.++..+|..|+||+|+||..+|..|++.++++
T Consensus 337 lRRgRfd~ev~IgiP~~~~RldIl~~l~k~~~~~-~~~~l~~iA~~thGyvGaDL~~l~~ea~~~~~r~----------- 404 (693)
T KOG0730|consen 337 LRRGRFDREVEIGIPGSDGRLDILRVLTKKMNLL-SDVDLEDIAVSTHGYVGADLAALCREASLQATRR----------- 404 (693)
T ss_pred hhcCCCcceeeecCCCchhHHHHHHHHHHhcCCc-chhhHHHHHHHccchhHHHHHHHHHHHHHHHhhh-----------
Confidence 998 999999999999999999999999998887 7899999999999999999999999999999887
Q ss_pred cCCCCcHHHHHHHHHhhCCCCCHHHHHHHH--HHHHhhCC
Q 012000 435 QLRPLRYEDFQKAMAVIRPSLNKSKWEELE--QWNREFGS 472 (473)
Q Consensus 435 ~~~~it~~df~~al~~~~ps~~~~~~~~~~--~w~~~~g~ 472 (473)
++++|..|+..++|+..++-+-... .|.+..|.
T Consensus 405 -----~~~~~~~A~~~i~psa~Re~~ve~p~v~W~dIGGl 439 (693)
T KOG0730|consen 405 -----TLEIFQEALMGIRPSALREILVEMPNVSWDDIGGL 439 (693)
T ss_pred -----hHHHHHHHHhcCCchhhhheeccCCCCChhhccCH
Confidence 5789999999999988877653333 37777764
No 30
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=6.6e-31 Score=285.67 Aligned_cols=248 Identities=35% Similarity=0.602 Sum_probs=214.0
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEe
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVS 281 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~ 281 (473)
.....+.|++|+|++.+++.|+|.|.+|+.+|+.|... ..||+|+|||||||||||+.|+++|..+ ...|+.-+
T Consensus 257 ~~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrk 336 (1080)
T KOG0732|consen 257 SVDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRK 336 (1080)
T ss_pred hhhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhc
Confidence 34457999999999999999999999999999999977 5899999999999999999999999987 46778888
Q ss_pred cCccchhhhhhhhhhhcc-----------eeeeeccc---cccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 282 ASSLTSKWVGEGEKLVRT-----------LFMIDSIM---STRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 282 ~~~l~~~~~g~~~~~~~~-----------if~IDei~---~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+++..++|+|+.+..++- |+++|+|+ ..++..+...+..++..||..|+|+... +.|+||||||
T Consensus 337 gaD~lskwvgEaERqlrllFeeA~k~qPSIIffdeIdGlapvrSskqEqih~SIvSTLLaLmdGldsR--gqVvvigATn 414 (1080)
T KOG0732|consen 337 GADCLSKWVGEAERQLRLLFEEAQKTQPSIIFFDEIDGLAPVRSSKQEQIHASIVSTLLALMDGLDSR--GQVVVIGATN 414 (1080)
T ss_pred CchhhccccCcHHHHHHHHHHHHhccCceEEeccccccccccccchHHHhhhhHHHHHHHhccCCCCC--CceEEEcccC
Confidence 999999999998877754 44455554 5666777788889999999999999754 5599999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+|+.+|+|++| ||++.++|++|+.+.|..|+..+-.+..-.++...+..||+.|.||.|+||++||.+|++.++++-.
T Consensus 415 Rpda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~~i~~~l~~~la~~t~gy~gaDlkaLCTeAal~~~~r~~ 494 (1080)
T KOG0732|consen 415 RPDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEPPISRELLLWLAEETSGYGGADLKALCTEAALIALRRSF 494 (1080)
T ss_pred CccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCCCCCHHHHHHHHHhccccchHHHHHHHHHHhhhhhcccc
Confidence 99999999999 9999999999999999999999998887778889999999999999999999999999999999865
Q ss_pred ccccccc-----cccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 426 TNILTVK-----ANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 426 ~~~~~~~-----~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
..+.... ......+...||..|+.++.|+..+
T Consensus 495 Pq~y~s~~kl~~d~~~ikV~~~~f~~A~~~i~ps~~R 531 (1080)
T KOG0732|consen 495 PQIYSSSDKLLIDVALIKVEVRDFVEAMSRITPSSRR 531 (1080)
T ss_pred CeeecccccccccchhhhhhhHhhhhhhhccCCCCCc
Confidence 5432211 1111238899999999999887665
No 31
>CHL00176 ftsH cell division protein; Validated
Probab=99.97 E-value=1.6e-29 Score=271.62 Aligned_cols=227 Identities=35% Similarity=0.585 Sum_probs=190.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
.+.++|+||+|++++++.|.+.+.. +..++.|... ..+++|+||+||||||||+||+++|.+++.+|+.++++++...
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~-lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~ 255 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSF-LKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEM 255 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHH-HhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHH
Confidence 3568999999999999999998765 6667766654 4668999999999999999999999999999999999988777
Q ss_pred hhhhhhh-----------hhcceeeeeccccccc------cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 289 WVGEGEK-----------LVRTLFMIDSIMSTRM------ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 289 ~~g~~~~-----------~~~~if~IDei~~~~~------~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
+.+.... ..+++++|||++.... ...+......++.||.+|+++.. ..+++||++||+++.
T Consensus 256 ~~g~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~--~~~ViVIaaTN~~~~ 333 (638)
T CHL00176 256 FVGVGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKG--NKGVIVIAATNRVDI 333 (638)
T ss_pred hhhhhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccC--CCCeeEEEecCchHh
Confidence 6665433 2345788999976532 12334455778899999998854 346999999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
+|++++| ||++.+.+++|+.++|.+||+.++....+. ++.++..+|..|.||+|+||.++|++|+..+.++.
T Consensus 334 LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~~~-~d~~l~~lA~~t~G~sgaDL~~lvneAal~a~r~~----- 407 (638)
T CHL00176 334 LDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKKLS-PDVSLELIARRTPGFSGADLANLLNEAAILTARRK----- 407 (638)
T ss_pred hhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcccc-hhHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHhC-----
Confidence 9999998 999999999999999999999999886544 67889999999999999999999999998887662
Q ss_pred ccccccCCCCcHHHHHHHHHhh
Q 012000 430 TVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~ 451 (473)
...|+++||..|+.++
T Consensus 408 ------~~~It~~dl~~Ai~rv 423 (638)
T CHL00176 408 ------KATITMKEIDTAIDRV 423 (638)
T ss_pred ------CCCcCHHHHHHHHHHH
Confidence 2469999999999987
No 32
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-30 Score=259.80 Aligned_cols=254 Identities=27% Similarity=0.441 Sum_probs=205.9
Q ss_pred CCCCCccc--ccChHHHHHHH-HHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCC-cEEEEecCc
Q 012000 210 SPSVKWED--VAGLEKAKQAL-MEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQA-TFFNVSASS 284 (473)
Q Consensus 210 ~~~~~~~d--ivGl~~~k~~L-~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~-~~~~v~~~~ 284 (473)
.|...|++ |+|++.--..+ +++.......|+....++ ...+|||||||||||||.+||.|...+++ .--.|++++
T Consensus 213 ~Pdf~Fe~mGIGGLd~EFs~IFRRAFAsRvFpp~vie~lGi~HVKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPe 292 (744)
T KOG0741|consen 213 NPDFNFESMGIGGLDKEFSDIFRRAFASRVFPPEVIEQLGIKHVKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPE 292 (744)
T ss_pred CCCCChhhcccccchHHHHHHHHHHHHhhcCCHHHHHHcCccceeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHH
Confidence 36788887 56777544433 445555555566666664 56799999999999999999999999975 455679999
Q ss_pred cchhhhhhhhhhhcceee----------------------eecccccccc--CcchHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 285 LTSKWVGEGEKLVRTLFM----------------------IDSIMSTRMA--NENDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 285 l~~~~~g~~~~~~~~if~----------------------IDei~~~~~~--~~~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
+.++|+|+++.+++.+|. ||.||..|+. +..+.++.++++||.-|||+..- .+|
T Consensus 293 IL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDAICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqL--NNI 370 (744)
T KOG0741|consen 293 ILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDAICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQL--NNI 370 (744)
T ss_pred HHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHHHHHhcCCCCCCCCccHHHHHHHHHhcccHHhh--hcE
Confidence 999999999999998774 5666667664 45678899999999999999754 459
Q ss_pred EEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhcc---CCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 012000 341 IVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKG---QAFSLPGGDLERLVRETEGYSGSDLQALCEE 415 (473)
Q Consensus 341 ~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~---~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~ 415 (473)
+|||-||+.+.+|+||+| ||...+++.+||+..|.+|++.|.++ .+.--++.++.+||.+|..|||++|..||+.
T Consensus 371 LVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~rMre~~~l~~dVdl~elA~lTKNfSGAEleglVks 450 (744)
T KOG0741|consen 371 LVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTKRMRENNKLSADVDLKELAALTKNFSGAELEGLVKS 450 (744)
T ss_pred EEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhhhhhhcCCCCCCcCHHHHHHHhcCCchhHHHHHHHH
Confidence 999999999999999999 99999999999999999999988765 2333378899999999999999999999999
Q ss_pred HHHHhHHHhcccc----cccccccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHH
Q 012000 416 AAMMPIRELGTNI----LTVKANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQ 465 (473)
Q Consensus 416 A~~~a~~~~~~~~----~~~~~~~~~~it~~df~~al~~~~ps--~~~~~~~~~~~ 465 (473)
|...|+.|..... ......+.-.|+++||..||.+++|. .+.++++.+..
T Consensus 451 A~S~A~nR~vk~~~~~~~~~~~~e~lkV~r~DFl~aL~dVkPAFG~see~l~~~~~ 506 (744)
T KOG0741|consen 451 AQSFAMNRHVKAGGKVEVDPVAIENLKVTRGDFLNALEDVKPAFGISEEDLERFVM 506 (744)
T ss_pred HHHHHHHhhhccCcceecCchhhhheeecHHHHHHHHHhcCcccCCCHHHHHHHHh
Confidence 9999998865421 11122334579999999999999997 57788888764
No 33
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=2.5e-29 Score=278.10 Aligned_cols=247 Identities=36% Similarity=0.638 Sum_probs=206.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
.+.++|+||+|++.+++.|++++.+|+.++++|..+. .+++++|||||||||||+||+++|++++.+++.+++.++.++
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 4789999999999999999999999999999998774 678999999999999999999999999999999999999888
Q ss_pred hhhhhhhhhc-----------ceeeeecccccccc---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH
Q 012000 289 WVGEGEKLVR-----------TLFMIDSIMSTRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 354 (473)
Q Consensus 289 ~~g~~~~~~~-----------~if~IDei~~~~~~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~ 354 (473)
+.|+.+..++ .+++|||++..... ...+...++...|+..|+++.. ...++||++||+++.||+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~--~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKG--RGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhcccc--CCCEEEEeecCChhhcCH
Confidence 8887765553 46678988664332 3344557888999999998854 356999999999999999
Q ss_pred HHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc--c--
Q 012000 355 AVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN--I-- 428 (473)
Q Consensus 355 al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~--~-- 428 (473)
++++ ||+..+++++|+.++|.+||+.+.....+. .+.+++.+++.|+||+++||..+|+.|++.++++.... .
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l~-~d~~l~~la~~t~G~~gadl~~l~~~a~~~al~r~~~~~~~~~ 408 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPLA-EDVDLDKLAEVTHGFVGADLAALAKEAAMAALRRFIREGKINF 408 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCCc-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHhhcccccc
Confidence 9998 999999999999999999999888776553 56789999999999999999999999999999876431 0
Q ss_pred ----cccccccCCCCcHHHHHHHHHhhCCCCCHHH
Q 012000 429 ----LTVKANQLRPLRYEDFQKAMAVIRPSLNKSK 459 (473)
Q Consensus 429 ----~~~~~~~~~~it~~df~~al~~~~ps~~~~~ 459 (473)
..........++++||..|++.++|+...+.
T Consensus 409 ~~~~i~~~~~~~~~v~~~df~~Al~~v~ps~~~~~ 443 (733)
T TIGR01243 409 EAEEIPAEVLKELKVTMKDFMEALKMVEPSAIREV 443 (733)
T ss_pred ccccccchhcccccccHHHHHHHHhhccccccchh
Confidence 0001112346899999999999999865543
No 34
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.7e-29 Score=240.07 Aligned_cols=233 Identities=35% Similarity=0.591 Sum_probs=194.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
..+...+++|+++.|+-.+..++++.+.+|+..|++|... ..||++++||||||||||++|+++|..++++|+.+.++.
T Consensus 122 ~~e~~~~~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~ 201 (388)
T KOG0651|consen 122 SHEDPRNISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSA 201 (388)
T ss_pred hhcCccccCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhh
Confidence 3444567999999999999999999999999999999984 689999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeecccc---ccccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMS---TRMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~---~~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+.++|+|++.+.++ +++++|+|+. .+... .+....+.+-+|+.+|+|... ..+|-+|+|||
T Consensus 202 lv~kyiGEsaRlIRemf~yA~~~~pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~--l~rVk~ImatN 279 (388)
T KOG0651|consen 202 LVDKYIGESARLIRDMFRYAREVIPCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDT--LHRVKTIMATN 279 (388)
T ss_pred hhhhhcccHHHHHHHHHHHHhhhCceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchh--cccccEEEecC
Confidence 99999999887775 5666776654 33221 222334556678888888854 45699999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+|+.|||+|+| |+++.+++|+|+...|..|++.+....... .+.+.+.+.+.++||.|+|+.+.|++|-+.++++..
T Consensus 280 rpdtLdpaLlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~~-Geid~eaivK~~d~f~gad~rn~~tEag~Fa~~~~~ 358 (388)
T KOG0651|consen 280 RPDTLDPALLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDFH-GEIDDEAILKLVDGFNGADLRNVCTEAGMFAIPEER 358 (388)
T ss_pred CccccchhhcCCccccceeccCCcchhhceeeEeecccccccc-ccccHHHHHHHHhccChHHHhhhcccccccccchhh
Confidence 99999999999 999999999999999999988776654332 455688899999999999999999999998887633
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhC
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
..+-++||..+++++.
T Consensus 359 -----------~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 359 -----------DEVLHEDFMKLVRKQA 374 (388)
T ss_pred -----------HHHhHHHHHHHHHHHH
Confidence 2356799999998853
No 35
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.96 E-value=3.8e-28 Score=263.63 Aligned_cols=229 Identities=35% Similarity=0.568 Sum_probs=191.0
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
...+|+|+.|.+.+++.|.+.+.++ ..+..+... ...++|+||+||||||||++|+++|.+++.+|+.++++++...+
T Consensus 147 ~~~~~~di~g~~~~~~~l~~i~~~~-~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~ 225 (644)
T PRK10733 147 IKTTFADVAGCDEAKEEVAELVEYL-REPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMF 225 (644)
T ss_pred hhCcHHHHcCHHHHHHHHHHHHHHh-hCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhh
Confidence 4578999999999999999988764 444444433 45678999999999999999999999999999999999888777
Q ss_pred hhhhhhhh-----------cceeeeeccccccc---c---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCC
Q 012000 290 VGEGEKLV-----------RTLFMIDSIMSTRM---A---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL 352 (473)
Q Consensus 290 ~g~~~~~~-----------~~if~IDei~~~~~---~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~L 352 (473)
.+.....+ +++++|||++.... . +.+......++++|.+||++.. ...++||+|||+|+.|
T Consensus 226 ~g~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~--~~~vivIaaTN~p~~l 303 (644)
T PRK10733 226 VGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRPDVL 303 (644)
T ss_pred hcccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccC--CCCeeEEEecCChhhc
Confidence 66644333 45778998876432 1 2234456788999999999864 4569999999999999
Q ss_pred CHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccc
Q 012000 353 DDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430 (473)
Q Consensus 353 d~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~ 430 (473)
|++++| ||++.+++++|+.++|.+||+.++.+.++. .+.++..+|+.|.||||+||.++|++|+..|+++.
T Consensus 304 D~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l~-~~~d~~~la~~t~G~sgadl~~l~~eAa~~a~r~~------ 376 (644)
T PRK10733 304 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN------ 376 (644)
T ss_pred CHHHhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCCC-CcCCHHHHHhhCCCCCHHHHHHHHHHHHHHHHHcC------
Confidence 999998 999999999999999999999999887664 56789999999999999999999999999988752
Q ss_pred cccccCCCCcHHHHHHHHHhhCCC
Q 012000 431 VKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 431 ~~~~~~~~it~~df~~al~~~~ps 454 (473)
...|++.||.+|+..+.+.
T Consensus 377 -----~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 377 -----KRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred -----CCcccHHHHHHHHHHHhcc
Confidence 2569999999999887654
No 36
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.96 E-value=3.9e-28 Score=273.99 Aligned_cols=194 Identities=19% Similarity=0.198 Sum_probs=157.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh------------------------------------
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW------------------------------------ 289 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~------------------------------------ 289 (473)
..||+||||+||||||||+||+|+|.+++++|+.|++++++.++
T Consensus 1627 l~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n 1706 (2281)
T CHL00206 1627 LSPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMN 1706 (2281)
T ss_pred CCCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcc
Confidence 46789999999999999999999999999999999999887543
Q ss_pred -----hhh-------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-CCCCcEEEEeecCCCC
Q 012000 290 -----VGE-------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-NPNDLVIVMGATNKPQ 350 (473)
Q Consensus 290 -----~g~-------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~-~~~~~v~vI~tTn~~~ 350 (473)
++. +.+.-++|++||||+...... .....+++|+.+|+|... ....+|+||||||+|+
T Consensus 1707 ~~~~~m~~~e~~~rIr~lFelARk~SPCIIFIDEIDaL~~~d---s~~ltL~qLLneLDg~~~~~s~~~VIVIAATNRPD 1783 (2281)
T CHL00206 1707 ALTMDMMPKIDRFYITLQFELAKAMSPCIIWIPNIHDLNVNE---SNYLSLGLLVNSLSRDCERCSTRNILVIASTHIPQ 1783 (2281)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHCCCeEEEEEchhhcCCCc---cceehHHHHHHHhccccccCCCCCEEEEEeCCCcc
Confidence 111 112335778899997765432 112347889999998742 2345799999999999
Q ss_pred CCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 351 ELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLP--GGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 351 ~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~--~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
.||||++| ||++.|+++.|+..+|.+++..++...++.+. ..++..+|..|.||+|+||.+||++|+..|+++-
T Consensus 1784 ~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~L~~~~vdl~~LA~~T~GfSGADLanLvNEAaliAirq~-- 1861 (2281)
T CHL00206 1784 KVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFHLEKKMFHTNGFGSITMGSNARDLVALTNEALSISITQK-- 1861 (2281)
T ss_pred cCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCCCCcccccHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC--
Confidence 99999999 99999999999999999998876544444443 3478999999999999999999999999999873
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCC
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
...|+.+||..|+.++..
T Consensus 1862 ---------ks~Id~~~I~~Al~Rq~~ 1879 (2281)
T CHL00206 1862 ---------KSIIDTNTIRSALHRQTW 1879 (2281)
T ss_pred ---------CCccCHHHHHHHHHHHHh
Confidence 245899999999987654
No 37
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.93 E-value=1.5e-25 Score=220.90 Aligned_cols=209 Identities=18% Similarity=0.191 Sum_probs=159.2
Q ss_pred CCCCcccc-cChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDV-AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~di-vGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
...+|+++ .|..-.+..+...+....+. .+.....++|.+++||||||||||++|+++|++++++|+.++++++.++|
T Consensus 110 ~~~~f~~~~g~~~~~p~f~dk~~~hi~kn-~l~~~~ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~ 188 (413)
T PLN00020 110 RTRSFDNLVGGYYIAPAFMDKVAVHIAKN-FLALPNIKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESEN 188 (413)
T ss_pred hhcchhhhcCccccCHHHHHHHHHHHHhh-hhhccCCCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCc
Confidence 34678888 55555555555444332221 11112357889999999999999999999999999999999999999999
Q ss_pred hhhhhhhhc----------------ceeeeecccccc---ccCcchHHHHHH-HHHHHHhcCcC----------CCCCCc
Q 012000 290 VGEGEKLVR----------------TLFMIDSIMSTR---MANENDASRRLK-SEFLIQFDGVT----------SNPNDL 339 (473)
Q Consensus 290 ~g~~~~~~~----------------~if~IDei~~~~---~~~~~~~~~~~~-~~ll~~ldg~~----------~~~~~~ 339 (473)
+|+++++++ ++++||||+... ...+.....+++ .+|+.+||+.. .....+
T Consensus 189 vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~ 268 (413)
T PLN00020 189 AGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAGAGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPR 268 (413)
T ss_pred CCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhcCCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCC
Confidence 999987765 355688887543 333344445555 78999988642 123567
Q ss_pred EEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC----CCHHHHHHHH
Q 012000 340 VIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG----YSGSDLQALC 413 (473)
Q Consensus 340 v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g----~s~~dL~~l~ 413 (473)
|+||+|||+|+.||++|+| ||++.+ .+|+.++|.+||+.++++.++ +.+++..|+..+.| |.|+--..+.
T Consensus 269 V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~R~eIL~~~~r~~~l--~~~dv~~Lv~~f~gq~~Df~GAlrar~y 344 (413)
T PLN00020 269 VPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTREDRIGVVHGIFRDDGV--SREDVVKLVDTFPGQPLDFFGALRARVY 344 (413)
T ss_pred ceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHHHHHHHHHHhccCCC--CHHHHHHHHHcCCCCCchhhhHHHHHHH
Confidence 9999999999999999999 999954 589999999999999998754 58999999999987 5677777777
Q ss_pred HHHHHHhHHHh
Q 012000 414 EEAAMMPIREL 424 (473)
Q Consensus 414 ~~A~~~a~~~~ 424 (473)
.++...-+.+.
T Consensus 345 d~~v~~~i~~~ 355 (413)
T PLN00020 345 DDEVRKWIAEV 355 (413)
T ss_pred HHHHHHHHHHh
Confidence 77776666554
No 38
>CHL00181 cbbX CbbX; Provisional
Probab=99.88 E-value=2e-21 Score=191.37 Aligned_cols=227 Identities=19% Similarity=0.236 Sum_probs=163.4
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcC--C--CCCceEEEEcCCCCcHHHHHHHHHHHc-------CCcEEEEecC
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGL--R--RPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSAS 283 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~--~--~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~~~~~v~~~ 283 (473)
+++++|++++|++|.+++.+... +...... . .++.++||+||||||||++|+++|..+ ..+++.++..
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~-~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~ 100 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLI-DRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRD 100 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHH-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHH
Confidence 45899999999999999876433 3333322 1 234569999999999999999999875 2468999999
Q ss_pred ccchhhhhhhhh--------hhcceeeeeccccccc-cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC----
Q 012000 284 SLTSKWVGEGEK--------LVRTLFMIDSIMSTRM-ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---- 350 (473)
Q Consensus 284 ~l~~~~~g~~~~--------~~~~if~IDei~~~~~-~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~---- 350 (473)
++...|+|++.. ....+++|||++.... ...+.........|+..|+.. ...++||++++...
T Consensus 101 ~l~~~~~g~~~~~~~~~l~~a~ggVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~----~~~~~vI~ag~~~~~~~~ 176 (287)
T CHL00181 101 DLVGQYIGHTAPKTKEVLKKAMGGVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQ----RDDLVVIFAGYKDRMDKF 176 (287)
T ss_pred HHHHHHhccchHHHHHHHHHccCCEEEEEccchhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHH
Confidence 998888876533 2356888999987522 223345567778888888743 34477777775321
Q ss_pred -CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHH------cCCCC-HHHHHHHHHHHHHHhHH
Q 012000 351 -ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRE------TEGYS-GSDLQALCEEAAMMPIR 422 (473)
Q Consensus 351 -~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~------t~g~s-~~dL~~l~~~A~~~a~~ 422 (473)
.++|++++||+..|+|+.++.+++.+|+..++.+.+..+++.....+... .+.|. ++++.++++.|...-..
T Consensus 177 ~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~~~l~~~~~~~L~~~i~~~~~~~~~GNaR~vrn~ve~~~~~~~~ 256 (287)
T CHL00181 177 YESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQYQLTPEAEKALLDYIKKRMEQPLFANARSVRNALDRARMRQAN 256 (287)
T ss_pred HhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHhCCCCCCccHHHHHHHHHHHHHHHHH
Confidence 34699999999999999999999999999999998888887766555543 23344 89999999999988877
Q ss_pred Hhcccc-cccccccCCCCcHHHHHH
Q 012000 423 ELGTNI-LTVKANQLRPLRYEDFQK 446 (473)
Q Consensus 423 ~~~~~~-~~~~~~~~~~it~~df~~ 446 (473)
|+.... ..........|+.+||.+
T Consensus 257 r~~~~~~~~~~~~~l~~~~~~d~~~ 281 (287)
T CHL00181 257 RIFESGGRVLTKADLVTIEAEDILK 281 (287)
T ss_pred HHHcCCCCCCCHHHHhCCCHHHHhH
Confidence 765421 111122334566666643
No 39
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.88 E-value=8.4e-22 Score=192.30 Aligned_cols=208 Identities=14% Similarity=0.169 Sum_probs=155.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCC---CCCceEEEEcCCCCcHHHHHHHHHHHc-------CCcEEEEecC
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR---RPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSAS 283 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~---~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~~~~~v~~~ 283 (473)
.+++++|++++|++|++.+.++.........+. ....++||+||||||||++|+++|+.+ ..+++.++++
T Consensus 4 ~l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~ 83 (261)
T TIGR02881 4 ELSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA 83 (261)
T ss_pred HHHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH
Confidence 367899999999999999988766544333322 224679999999999999999999874 3478889999
Q ss_pred ccchhhhhhhhhhh--------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC-----C
Q 012000 284 SLTSKWVGEGEKLV--------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-----Q 350 (473)
Q Consensus 284 ~l~~~~~g~~~~~~--------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~-----~ 350 (473)
++.+.|+|+....+ ..+++|||++......+..........++..|+.. ...+++|+++... .
T Consensus 84 ~l~~~~~g~~~~~~~~~~~~a~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~----~~~~~vila~~~~~~~~~~ 159 (261)
T TIGR02881 84 DLVGEYIGHTAQKTREVIKKALGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDN----RNEFVLILAGYSDEMDYFL 159 (261)
T ss_pred HhhhhhccchHHHHHHHHHhccCCEEEEechhhhccCCccchHHHHHHHHHHHHhcc----CCCEEEEecCCcchhHHHH
Confidence 99888887764432 46788999987654333334455677788888743 2335666555332 2
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc-------C--CCCHHHHHHHHHHHHHHhH
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET-------E--GYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t-------~--g~s~~dL~~l~~~A~~~a~ 421 (473)
.++|++++||...+.||.++.+++..|++.++...++.++++.+..|+... . .-.++.+.++++.|.....
T Consensus 160 ~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~~~~gn~R~~~n~~e~a~~~~~ 239 (261)
T TIGR02881 160 SLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREYKLTEEAKWKLREHLYKVDQLSSREFSNARYVRNIIEKAIRRQA 239 (261)
T ss_pred hcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCCccCHHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH
Confidence 368899999998899999999999999999999888888888888775432 1 2358899999999887766
Q ss_pred HHhc
Q 012000 422 RELG 425 (473)
Q Consensus 422 ~~~~ 425 (473)
.++.
T Consensus 240 ~r~~ 243 (261)
T TIGR02881 240 VRLL 243 (261)
T ss_pred HHHh
Confidence 6643
No 40
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.87 E-value=3.7e-22 Score=185.36 Aligned_cols=192 Identities=19% Similarity=0.246 Sum_probs=134.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch--
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-- 287 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-- 287 (473)
.+|.+|+|++|+++++..++-++.....+ ..+..++|||||||+||||||+.||++++.+|..++++.+..
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa~~r-------~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~~ 90 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAAKKR-------GEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKAG 90 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHHHCT-------TS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SCH
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHHHhc-------CCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhHH
Confidence 47899999999999999988766432221 233468999999999999999999999999999998865421
Q ss_pred hhhhhh-hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC------CC--------CCcEEEEeecCCCCCC
Q 012000 288 KWVGEG-EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS------NP--------NDLVIVMGATNKPQEL 352 (473)
Q Consensus 288 ~~~g~~-~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~------~~--------~~~v~vI~tTn~~~~L 352 (473)
+..... .-.-+.+++||||++ ........|+..|+...- .+ -.++.+||||++...|
T Consensus 91 dl~~il~~l~~~~ILFIDEIHR--------lnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATTr~g~l 162 (233)
T PF05496_consen 91 DLAAILTNLKEGDILFIDEIHR--------LNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATTRAGLL 162 (233)
T ss_dssp HHHHHHHT--TT-EEEECTCCC----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEESSGCCT
T ss_pred HHHHHHHhcCCCcEEEEechhh--------ccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeecccccc
Confidence 111111 112357999999944 445556667777764311 11 1358899999999999
Q ss_pred CHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 353 DDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 353 d~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
.++++.||.....+...+.++...|++......++.++++...+||.++.| +++-..+|++++-
T Consensus 163 s~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~i~~~~~~~Ia~rsrG-tPRiAnrll~rvr 226 (233)
T PF05496_consen 163 SSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIEIDEDAAEEIARRSRG-TPRIANRLLRRVR 226 (233)
T ss_dssp SHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-EE-HHHHHHHHHCTTT-SHHHHHHHHHHHC
T ss_pred chhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHH
Confidence 999999999988999999999999999999999999999999999999999 8888888887663
No 41
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=7e-21 Score=191.00 Aligned_cols=197 Identities=22% Similarity=0.285 Sum_probs=156.1
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCC-ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhh
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPA-RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~-~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~ 290 (473)
+-+|+.++-..+.|+.|.+-+..+...++.+...+.|| +|.|||||||||||+++.|+|++++..++.++.++.....
T Consensus 197 pstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~n~- 275 (457)
T KOG0743|consen 197 PSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKLDS- 275 (457)
T ss_pred CCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccCcH-
Confidence 48899999999999999999999999999999988887 7999999999999999999999999999998876654322
Q ss_pred hhhhhh-----hcceeeeeccccccc------cC---cc-hHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 291 GEGEKL-----VRTLFMIDSIMSTRM------AN---EN-DASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 291 g~~~~~-----~~~if~IDei~~~~~------~~---~~-~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
+...+ -+.|+.|++|+.... .. .. ......++.||+.+||+.+.+++--+||.|||+++.||||
T Consensus 276 -dLr~LL~~t~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTTNh~EkLDPA 354 (457)
T KOG0743|consen 276 -DLRHLLLATPNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTTNHKEKLDPA 354 (457)
T ss_pred -HHHHHHHhCCCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEecCChhhcCHh
Confidence 12222 256777888876422 10 11 1234678999999999998876667889999999999999
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC--CCHHHHHHHH
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG--YSGSDLQALC 413 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g--~s~~dL~~l~ 413 (473)
|+| |++.+|+++.-+..+-..|+..++.-.. +...+.++.+.-++ .|++|+...+
T Consensus 355 LlRpGRmDmhI~mgyCtf~~fK~La~nYL~~~~---~h~L~~eie~l~~~~~~tPA~V~e~l 413 (457)
T KOG0743|consen 355 LLRPGRMDMHIYMGYCTFEAFKTLASNYLGIEE---DHRLFDEIERLIEETEVTPAQVAEEL 413 (457)
T ss_pred hcCCCcceeEEEcCCCCHHHHHHHHHHhcCCCC---CcchhHHHHHHhhcCccCHHHHHHHH
Confidence 999 9999999999999999999999997643 22333344433333 5899887643
No 42
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.86 E-value=1.2e-20 Score=185.93 Aligned_cols=226 Identities=19% Similarity=0.233 Sum_probs=165.7
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcC----CCCCceEEEEcCCCCcHHHHHHHHHHHcC-------CcEEEEecCcc
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL----RRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFFNVSASSL 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~----~~~~~~iLL~GPpGtGKT~La~aiA~e~~-------~~~~~v~~~~l 285 (473)
+++|++++|++|.+++.+.. .+..+... ..|..++||+||||||||++|+++|..+. .+|+.+++.++
T Consensus 23 ~l~Gl~~vk~~i~e~~~~~~-~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 23 ELIGLKPVKTRIREIAALLL-VERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred hccCHHHHHHHHHHHHHHHH-HHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 68999999999999888733 33333322 22456899999999999999999998762 37999999888
Q ss_pred chhhhhhhhhh--------hcceeeeecccccc-ccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC--C---C
Q 012000 286 TSKWVGEGEKL--------VRTLFMIDSIMSTR-MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP--Q---E 351 (473)
Q Consensus 286 ~~~~~g~~~~~--------~~~if~IDei~~~~-~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~--~---~ 351 (473)
...++|.+... ...+++|||++... ..............|+..|+.. ...++||++++.. + .
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~~gvL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~----~~~~~vI~a~~~~~~~~~~~ 177 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQ----RDDLVVILAGYKDRMDSFFE 177 (284)
T ss_pred hHhhcccchHHHHHHHHHccCcEEEEechhhhccCCCccchHHHHHHHHHHHHhcC----CCCEEEEEeCCcHHHHHHHh
Confidence 88887765332 34678899998652 1223344566778888888743 3447788777542 3 3
Q ss_pred CCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHHh
Q 012000 352 LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 352 Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t-------~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
++|++++||...|.||.++.+++..|+.+++.+.+..+++..+..+.... .--+++.+.++++.+...-..|+
T Consensus 178 ~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~l~~~a~~~L~~~l~~~~~~~~~GN~R~lrn~ve~~~~~~~~r~ 257 (284)
T TIGR02880 178 SNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYRFSAEAEEAFADYIALRRTQPHFANARSIRNAIDRARLRQANRL 257 (284)
T ss_pred hCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccccCHHHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHHHHHHHH
Confidence 48999999999999999999999999999999988888888877776651 22258999999999988887777
Q ss_pred ccccc-ccccccCCCCcHHHHHHH
Q 012000 425 GTNIL-TVKANQLRPLRYEDFQKA 447 (473)
Q Consensus 425 ~~~~~-~~~~~~~~~it~~df~~a 447 (473)
..... .........|+.+|+..+
T Consensus 258 ~~~~~~~~~~~~~~~~~~~d~~~~ 281 (284)
T TIGR02880 258 FCDLDRVLDKSDLETIDPEDLLAS 281 (284)
T ss_pred hcCcCCCCCHHHHhCCCHHHHhhc
Confidence 55321 122233456777776543
No 43
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=2e-21 Score=186.00 Aligned_cols=223 Identities=28% Similarity=0.347 Sum_probs=167.3
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhh--hcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEe
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLF--TGLRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVS 281 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~--~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~ 281 (473)
--|+.++--..+|+.|..++...+...+-. +.+..-.+-|||+||||||||+|++|+|+.+ ...+++++
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 358888889999999999887655443322 1222224679999999999999999999987 35678999
Q ss_pred cCccchhhhhhhhhhhcceee----------------eeccccc---c----ccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 282 ASSLTSKWVGEGEKLVRTLFM----------------IDSIMST---R----MANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 282 ~~~l~~~~~g~~~~~~~~if~----------------IDei~~~---~----~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
+..+.++|++++.+++..+|. |||+... | +..+....-|.++.+|.+||.+...+
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~-- 296 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYP-- 296 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCC--
Confidence 999999999999998876663 7877542 2 23344555688999999999997544
Q ss_pred cEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc---CCCCC--------------ChhhHHHHHHH-
Q 012000 339 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---QAFSL--------------PGGDLERLVRE- 400 (473)
Q Consensus 339 ~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---~~~~l--------------~~~~l~~La~~- 400 (473)
+|++++|+|-.+.||.|+..|-+...|+++|+...+..|++.++.. .|+-+ .+.....++..
T Consensus 297 NvliL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~s~~~~~~i~~~~~~~~~~~~~~ 376 (423)
T KOG0744|consen 297 NVLILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQRSTGVKEFIKYQKALRNILIELS 376 (423)
T ss_pred CEEEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeeccchhhhHHhHhhHhHHHHHHHHh
Confidence 4999999999999999999999999999999999999999987653 12111 11223334444
Q ss_pred cCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 401 TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 401 t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
+.|.||+-|+.|=-.|...-. +..+++.++|..|+..
T Consensus 377 ~~gLSGRtlrkLP~Laha~y~-------------~~~~v~~~~fl~al~e 413 (423)
T KOG0744|consen 377 TVGLSGRTLRKLPLLAHAEYF-------------RTFTVDLSNFLLALLE 413 (423)
T ss_pred hcCCccchHhhhhHHHHHhcc-------------CCCccChHHHHHHHHH
Confidence 589999998887554432221 2257999999988865
No 44
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.84 E-value=3.3e-19 Score=179.75 Aligned_cols=236 Identities=17% Similarity=0.158 Sum_probs=168.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
.+++|.+|++++|+++.++.|..++..... ...++.++|||||||||||++|+++|++++..+..+++..+..
T Consensus 17 ~~~rP~~~~~~vG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~ 89 (328)
T PRK00080 17 RSLRPKSLDEFIGQEKVKENLKIFIEAAKK-------RGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEK 89 (328)
T ss_pred hhcCcCCHHHhcCcHHHHHHHHHHHHHHHh-------cCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccC
Confidence 346788999999999999999988753211 1345678999999999999999999999999887776553321
Q ss_pred h--hhhhhh-hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-----C---------CCCcEEEEeecCCCC
Q 012000 288 K--WVGEGE-KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-----N---------PNDLVIVMGATNKPQ 350 (473)
Q Consensus 288 ~--~~g~~~-~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~-----~---------~~~~v~vI~tTn~~~ 350 (473)
. ..+... .....+++|||++..... ....+...|+.... . ...++.+|++||++.
T Consensus 90 ~~~l~~~l~~l~~~~vl~IDEi~~l~~~--------~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~~~~ 161 (328)
T PRK00080 90 PGDLAAILTNLEEGDVLFIDEIHRLSPV--------VEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATTRAG 161 (328)
T ss_pred hHHHHHHHHhcccCCEEEEecHhhcchH--------HHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecCCcc
Confidence 1 111111 122468889999654321 11223333332110 0 112378899999999
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccc
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~ 430 (473)
.+++++++||...+.++.|+.+++.++++..+...++.++++.+..|+..+.| +++.+..+++.+...+..+
T Consensus 162 ~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~ia~~~~G-~pR~a~~~l~~~~~~a~~~------- 233 (328)
T PRK00080 162 LLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGVEIDEEGALEIARRSRG-TPRIANRLLRRVRDFAQVK------- 233 (328)
T ss_pred cCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHcCC-CchHHHHHHHHHHHHHHHc-------
Confidence 99999999999889999999999999999999999999999999999999999 5688888888776655432
Q ss_pred cccccCCCCcHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhh
Q 012000 431 VKANQLRPLRYEDFQKAMAVIRPS---LNKSKWEELEQWNREF 470 (473)
Q Consensus 431 ~~~~~~~~it~~df~~al~~~~ps---~~~~~~~~~~~w~~~~ 470 (473)
....|+.+++..++..+... ....+.+.+..+...|
T Consensus 234 ----~~~~I~~~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (328)
T PRK00080 234 ----GDGVITKEIADKALDMLGVDELGLDEMDRKYLRTIIEKF 272 (328)
T ss_pred ----CCCCCCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHc
Confidence 12458888888888876544 3444545554455554
No 45
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.83 E-value=2e-19 Score=170.23 Aligned_cols=235 Identities=18% Similarity=0.190 Sum_probs=172.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
..+|.+|+|++|++.+|+.|.-++.....+. ...-|+|||||||.||||||+.+|+|+|..+-..++.-+...
T Consensus 19 ~lRP~~l~efiGQ~~vk~~L~ifI~AAk~r~-------e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~ 91 (332)
T COG2255 19 SLRPKTLDEFIGQEKVKEQLQIFIKAAKKRG-------EALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKP 91 (332)
T ss_pred ccCcccHHHhcChHHHHHHHHHHHHHHHhcC-------CCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccCh
Confidence 3468999999999999999998876443332 335699999999999999999999999999988877655321
Q ss_pred --hhhh-hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc--------CCC------CCCcEEEEeecCCCCC
Q 012000 289 --WVGE-GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV--------TSN------PNDLVIVMGATNKPQE 351 (473)
Q Consensus 289 --~~g~-~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~--------~~~------~~~~v~vI~tTn~~~~ 351 (473)
..+- +.-.-..|++||||++.... +...|...|+.+ ... .-.++.+||||.+...
T Consensus 92 gDlaaiLt~Le~~DVLFIDEIHrl~~~--------vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATTr~G~ 163 (332)
T COG2255 92 GDLAAILTNLEEGDVLFIDEIHRLSPA--------VEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATTRAGM 163 (332)
T ss_pred hhHHHHHhcCCcCCeEEEehhhhcChh--------HHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecccccc
Confidence 1111 11122579999999665432 333334444432 111 1246899999999999
Q ss_pred CCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccc
Q 012000 352 LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTV 431 (473)
Q Consensus 352 Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~ 431 (473)
|..+++.||.....+...+.++...|+.......++.++++...++|+++.| +++--..|+++.-..|.-+
T Consensus 164 lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~i~~~~a~eIA~rSRG-TPRIAnRLLrRVRDfa~V~-------- 234 (332)
T COG2255 164 LTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIEIDEEAALEIARRSRG-TPRIANRLLRRVRDFAQVK-------- 234 (332)
T ss_pred ccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCCCChHHHHHHHHhccC-CcHHHHHHHHHHHHHHHHh--------
Confidence 9999999999999999999999999999999989999999999999999999 8888888888776665332
Q ss_pred ccccCCCCcHHHHHHHHHhhC---CCCCHHHHHHHHHHHHhh
Q 012000 432 KANQLRPLRYEDFQKAMAVIR---PSLNKSKWEELEQWNREF 470 (473)
Q Consensus 432 ~~~~~~~it~~df~~al~~~~---ps~~~~~~~~~~~w~~~~ 470 (473)
....|+.+--.+||+... -....-+.+.+....+.|
T Consensus 235 ---~~~~I~~~ia~~aL~~L~Vd~~GLd~~D~k~L~~li~~f 273 (332)
T COG2255 235 ---GDGDIDRDIADKALKMLDVDELGLDEIDRKYLRALIEQF 273 (332)
T ss_pred ---cCCcccHHHHHHHHHHhCcccccccHHHHHHHHHHHHHh
Confidence 113456666666666543 233444555566666666
No 46
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=2.1e-19 Score=185.43 Aligned_cols=188 Identities=18% Similarity=0.224 Sum_probs=144.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|+||+|++.+.+.|+.++. ....++.+||+||||||||++|+++|+.+++.
T Consensus 8 L~~KyRP~~f~dvVGQe~iv~~L~~~i~-----------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg 76 (484)
T PRK14956 8 LSRKYRPQFFRDVIHQDLAIGALQNALK-----------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCN 76 (484)
T ss_pred hHHHhCCCCHHHHhChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccC
Confidence 4567899999999999999999998885 22334579999999999999999999988752
Q ss_pred ---------------EEEEecCccc-hhhhhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 277 ---------------FFNVSASSLT-SKWVGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 277 ---------------~~~v~~~~l~-~~~~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
++.+++..-. ..-+.+. ...-..|++|||++. ......+.||..|+
T Consensus 77 ~C~sC~~i~~g~~~dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~--------Ls~~A~NALLKtLE-- 146 (484)
T PRK14956 77 ECTSCLEITKGISSDVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHM--------LTDQSFNALLKTLE-- 146 (484)
T ss_pred CCcHHHHHHccCCccceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhh--------cCHHHHHHHHHHhh--
Confidence 4555542110 0000000 011235888999944 34556788888886
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++.++++|++|+.++.|.+++++||.. +.|..++.++....++..+...++.++++.+..|++.++| +.+|.-++
T Consensus 147 --EPp~~viFILaTte~~kI~~TI~SRCq~-~~f~~ls~~~i~~~L~~i~~~Egi~~e~eAL~~Ia~~S~G-d~RdAL~l 222 (484)
T PRK14956 147 --EPPAHIVFILATTEFHKIPETILSRCQD-FIFKKVPLSVLQDYSEKLCKIENVQYDQEGLFWIAKKGDG-SVRDMLSF 222 (484)
T ss_pred --cCCCceEEEeecCChhhccHHHHhhhhe-eeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-hHHHHHHH
Confidence 4556799999999999999999999965 7888888888888899999989999999999999999999 67777778
Q ss_pred HHHHHH
Q 012000 413 CEEAAM 418 (473)
Q Consensus 413 ~~~A~~ 418 (473)
++.+..
T Consensus 223 Leq~i~ 228 (484)
T PRK14956 223 MEQAIV 228 (484)
T ss_pred HHHHHH
Confidence 776653
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=4.2e-19 Score=189.54 Aligned_cols=187 Identities=21% Similarity=0.250 Sum_probs=146.0
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++|++.+|+||+|++.+++.|+.++. ..+.++.+||+||+|||||++|+++|+.+++
T Consensus 6 LarKYRPqtFdEVIGQe~Vv~~L~~aL~-----------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG 74 (830)
T PRK07003 6 LARKWRPKDFASLVGQEHVVRALTHALD-----------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCG 74 (830)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHh-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCc
Confidence 4568999999999999999999999874 2344567899999999999999999998864
Q ss_pred --------------cEEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 276 --------------TFFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 276 --------------~~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
.+++++..+-. .+.+... .-..|++|||++.+ .....+.||+.|+
T Consensus 75 ~C~sCr~I~~G~h~DviEIDAas~r--gVDdIReLIe~a~~~P~~gr~KVIIIDEah~L--------T~~A~NALLKtLE 144 (830)
T PRK07003 75 VCRACREIDEGRFVDYVEMDAASNR--GVDEMAALLERAVYAPVDARFKVYMIDEVHML--------TNHAFNAMLKTLE 144 (830)
T ss_pred ccHHHHHHhcCCCceEEEecccccc--cHHHHHHHHHHHHhccccCCceEEEEeChhhC--------CHHHHHHHHHHHH
Confidence 35555543211 1111111 11367889999443 3445677888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
.+..+++||.+||.++.|.+.|++||.. +.|..++.++....|+.++..+++.++++.+..|++.++| +.++..
T Consensus 145 ----EPP~~v~FILaTtd~~KIp~TIrSRCq~-f~Fk~Ls~eeIv~~L~~Il~~EgI~id~eAL~lIA~~A~G-smRdAL 218 (830)
T PRK07003 145 ----EPPPHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPAGHIVSHLERILGEERIAFEPQALRLLARAAQG-SMRDAL 218 (830)
T ss_pred ----hcCCCeEEEEEECChhhccchhhhheEE-EecCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3455689999999999999999999955 8999999999999999999999999999999999999999 667777
Q ss_pred HHHHHHHHH
Q 012000 411 ALCEEAAMM 419 (473)
Q Consensus 411 ~l~~~A~~~ 419 (473)
+++..+...
T Consensus 219 sLLdQAia~ 227 (830)
T PRK07003 219 SLTDQAIAY 227 (830)
T ss_pred HHHHHHHHh
Confidence 777766543
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.82 E-value=1e-18 Score=174.38 Aligned_cols=211 Identities=17% Similarity=0.151 Sum_probs=150.8
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch--hhhh
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS--KWVG 291 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~--~~~g 291 (473)
+|+|++|++++++.|..++..... ...++.+++||||||||||+||+++|++++..+..+.+..+.. ....
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~-------~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~~~l~~ 74 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKM-------RQEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKPGDLAA 74 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCchhHHH
Confidence 799999999999999988853222 1233568999999999999999999999998877766543211 1111
Q ss_pred hhh-hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC--------------CCCCcEEEEeecCCCCCCCHHH
Q 012000 292 EGE-KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--------------NPNDLVIVMGATNKPQELDDAV 356 (473)
Q Consensus 292 ~~~-~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~--------------~~~~~v~vI~tTn~~~~Ld~al 356 (473)
... .....+++|||++..... ....|+..|+.... ....++.+|++||++..+++++
T Consensus 75 ~l~~~~~~~vl~iDEi~~l~~~--------~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~l~~~l 146 (305)
T TIGR00635 75 ILTNLEEGDVLFIDEIHRLSPA--------VEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGMLTSPL 146 (305)
T ss_pred HHHhcccCCEEEEehHhhhCHH--------HHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccccCHHH
Confidence 111 122468889999654421 22223333322110 0112378999999999999999
Q ss_pred hcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccC
Q 012000 357 LRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQL 436 (473)
Q Consensus 357 ~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~ 436 (473)
++||...+.++.|+.+++.++++..+...++.++++.++.|++.+.|+ ++.+..++..+...+... ..
T Consensus 147 ~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~~~~~~al~~ia~~~~G~-pR~~~~ll~~~~~~a~~~-----------~~ 214 (305)
T TIGR00635 147 RDRFGIILRLEFYTVEELAEIVSRSAGLLNVEIEPEAALEIARRSRGT-PRIANRLLRRVRDFAQVR-----------GQ 214 (305)
T ss_pred HhhcceEEEeCCCCHHHHHHHHHHHHHHhCCCcCHHHHHHHHHHhCCC-cchHHHHHHHHHHHHHHc-----------CC
Confidence 999988899999999999999999998888889999999999999995 577778888766554222 11
Q ss_pred CCCcHHHHHHHHHhh
Q 012000 437 RPLRYEDFQKAMAVI 451 (473)
Q Consensus 437 ~~it~~df~~al~~~ 451 (473)
..|+.+++..++..+
T Consensus 215 ~~it~~~v~~~l~~l 229 (305)
T TIGR00635 215 KIINRDIALKALEML 229 (305)
T ss_pred CCcCHHHHHHHHHHh
Confidence 346666777666654
No 49
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=5.1e-19 Score=186.78 Aligned_cols=186 Identities=21% Similarity=0.260 Sum_probs=146.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++|++.+|+||+|++.+++.|++++. ..+.++.+||+||+|||||++|+.+|+.+++
T Consensus 6 LarKYRPqtFddVIGQe~vv~~L~~al~-----------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~ 74 (700)
T PRK12323 6 LARKWRPRDFTTLVGQEHVVRALTHALE-----------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGIT 74 (700)
T ss_pred HHHHhCCCcHHHHcCcHHHHHHHHHHHH-----------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCC
Confidence 4567899999999999999999999885 2334567899999999999999999998875
Q ss_pred -------------------cEEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHH
Q 012000 276 -------------------TFFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 276 -------------------~~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
.++.+++.+- ..+.+... .-..|++|||++.+ .....+.|
T Consensus 75 ~~PCG~C~sC~~I~aG~hpDviEIdAas~--~gVDdIReLie~~~~~P~~gr~KViIIDEah~L--------s~~AaNAL 144 (700)
T PRK12323 75 AQPCGQCRACTEIDAGRFVDYIEMDAASN--RGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML--------TNHAFNAM 144 (700)
T ss_pred CCCCcccHHHHHHHcCCCCcceEeccccc--CCHHHHHHHHHHHHhchhcCCceEEEEEChHhc--------CHHHHHHH
Confidence 3444444321 01111111 11358889999443 44567788
Q ss_pred HHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 012000 326 LIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 326 l~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s 405 (473)
|+.|+ .+..+++||++||.++.|.+.|++||.. +.|..++.++....++.++...++.++++.+..|+..++| +
T Consensus 145 LKTLE----EPP~~v~FILaTtep~kLlpTIrSRCq~-f~f~~ls~eei~~~L~~Il~~Egi~~d~eAL~~IA~~A~G-s 218 (700)
T PRK12323 145 LKTLE----EPPEHVKFILATTDPQKIPVTVLSRCLQ-FNLKQMPPGHIVSHLDAILGEEGIAHEVNALRLLAQAAQG-S 218 (700)
T ss_pred HHhhc----cCCCCceEEEEeCChHhhhhHHHHHHHh-cccCCCChHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88887 4556789999999999999999999954 8999999999999999999888888888899999999998 7
Q ss_pred HHHHHHHHHHHHH
Q 012000 406 GSDLQALCEEAAM 418 (473)
Q Consensus 406 ~~dL~~l~~~A~~ 418 (473)
.++..+++..+..
T Consensus 219 ~RdALsLLdQaia 231 (700)
T PRK12323 219 MRDALSLTDQAIA 231 (700)
T ss_pred HHHHHHHHHHHHH
Confidence 8888888877654
No 50
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.81 E-value=5.8e-19 Score=173.56 Aligned_cols=202 Identities=25% Similarity=0.356 Sum_probs=146.8
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh--
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-- 288 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-- 288 (473)
+.-.|++||........|..+.+.-.. .. ....|-++||||||||||||++|+-||...|..+-.+.+.++...
T Consensus 350 gk~pl~~ViL~psLe~Rie~lA~aTaN-TK---~h~apfRNilfyGPPGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~ 425 (630)
T KOG0742|consen 350 GKDPLEGVILHPSLEKRIEDLAIATAN-TK---KHQAPFRNILFYGPPGTGKTMFARELARHSGLDYAIMTGGDVAPLGA 425 (630)
T ss_pred CCCCcCCeecCHHHHHHHHHHHHHhcc-cc---cccchhhheeeeCCCCCCchHHHHHHHhhcCCceehhcCCCccccch
Confidence 445699999999999999887753211 11 123456899999999999999999999999999988887776321
Q ss_pred -----hhhh---hhh-hhcceeeeeccccc---c-ccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 289 -----WVGE---GEK-LVRTLFMIDSIMST---R-MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 289 -----~~g~---~~~-~~~~if~IDei~~~---~-~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
.... +.+ .-.-+++||+.+.. | ....++..+..++.||-.-. .....|+++.+||+|.++|.+
T Consensus 426 qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaLNAlLfRTG----dqSrdivLvlAtNrpgdlDsA 501 (630)
T KOG0742|consen 426 QAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSRDIVLVLATNRPGDLDSA 501 (630)
T ss_pred HHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHHHHHHHHhc----ccccceEEEeccCCccchhHH
Confidence 1000 111 11246678887653 2 23455666677777775433 223448888899999999999
Q ss_pred HhcccccccccCCCcHHHHHHHHHHHhccCC----------------------CC----CChhhHHHHHHHcCCCCHHHH
Q 012000 356 VLRRLVKRIYVPLPDENVRRLLLKHKLKGQA----------------------FS----LPGGDLERLVRETEGYSGSDL 409 (473)
Q Consensus 356 l~rRf~~~i~~~~P~~~~r~~il~~~l~~~~----------------------~~----l~~~~l~~La~~t~g~s~~dL 409 (473)
+-.||+..++||+|..++|..|+..|+.++- +. +.+..+.+.|+.|+||||++|
T Consensus 502 V~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~sQ~i~l~~~~t~~~~~EaAkkTeGfSGREi 581 (630)
T KOG0742|consen 502 VNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKESQRIKLAGFDTGRKCSEAAKKTEGFSGREI 581 (630)
T ss_pred HHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhhheeeeccchHHHHHHHHHHhccCCcHHHH
Confidence 9999999999999999999999998886421 11 234467788999999999999
Q ss_pred HHHHHHHHHHh
Q 012000 410 QALCEEAAMMP 420 (473)
Q Consensus 410 ~~l~~~A~~~a 420 (473)
..|+--....+
T Consensus 582 akLva~vQAav 592 (630)
T KOG0742|consen 582 AKLVASVQAAV 592 (630)
T ss_pred HHHHHHHHHHH
Confidence 99987544333
No 51
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1.2e-18 Score=172.22 Aligned_cols=210 Identities=28% Similarity=0.364 Sum_probs=146.6
Q ss_pred cCCCCCCcccccChHHHH---HHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 208 DRSPSVKWEDVAGLEKAK---QALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k---~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.+-+|.+++|++|++++. .-|.+++. .....+++|||||||||||||+.||..++..|..+++..
T Consensus 16 ~rmRP~~lde~vGQ~HLlg~~~~lrr~v~------------~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~ 83 (436)
T COG2256 16 ERLRPKSLDEVVGQEHLLGEGKPLRRAVE------------AGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT 83 (436)
T ss_pred HHhCCCCHHHhcChHhhhCCCchHHHHHh------------cCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc
Confidence 344789999999999876 34444442 122458999999999999999999999999999999764
Q ss_pred cchh----hhhhhhhhh----cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec--CCCCCCCH
Q 012000 285 LTSK----WVGEGEKLV----RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQELDD 354 (473)
Q Consensus 285 l~~~----~~g~~~~~~----~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT--n~~~~Ld~ 354 (473)
.-.+ .+.++++.. +.|++||||++.. +.....||-.|+ ++.|++|||| |+...|.+
T Consensus 84 ~gvkdlr~i~e~a~~~~~~gr~tiLflDEIHRfn--------K~QQD~lLp~vE------~G~iilIGATTENPsF~ln~ 149 (436)
T COG2256 84 SGVKDLREIIEEARKNRLLGRRTILFLDEIHRFN--------KAQQDALLPHVE------NGTIILIGATTENPSFELNP 149 (436)
T ss_pred ccHHHHHHHHHHHHHHHhcCCceEEEEehhhhcC--------hhhhhhhhhhhc------CCeEEEEeccCCCCCeeecH
Confidence 4222 233332222 5789999995543 334455666664 4558888887 77789999
Q ss_pred HHhcccccccccCCCcHHHHHHHHHHHhc--cCCCC-----CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 355 AVLRRLVKRIYVPLPDENVRRLLLKHKLK--GQAFS-----LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 355 al~rRf~~~i~~~~P~~~~r~~il~~~l~--~~~~~-----l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
||++|+.. +.+.+.+.++..+++...+. ..++. ++++.++.|+..+.|...+-| ++++.++..+ +
T Consensus 150 ALlSR~~v-f~lk~L~~~di~~~l~ra~~~~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~aL-N~LE~~~~~~-~----- 221 (436)
T COG2256 150 ALLSRARV-FELKPLSSEDIKKLLKRALLDEERGLGGQIIVLDEEALDYLVRLSNGDARRAL-NLLELAALSA-E----- 221 (436)
T ss_pred HHhhhhhe-eeeecCCHHHHHHHHHHHHhhhhcCCCcccccCCHHHHHHHHHhcCchHHHHH-HHHHHHHHhc-C-----
Confidence 99999854 78888899998888888443 33443 678899999999999544444 3344443332 0
Q ss_pred ccccccccCCCCcHHHHHHHHHhhCCCCCHH
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIRPSLNKS 458 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~ps~~~~ 458 (473)
....++.+++++.+.+..+..+++
T Consensus 222 -------~~~~~~~~~l~~~l~~~~~~~Dk~ 245 (436)
T COG2256 222 -------PDEVLILELLEEILQRRSARFDKD 245 (436)
T ss_pred -------CCcccCHHHHHHHHhhhhhccCCC
Confidence 011345778888887766655554
No 52
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.80 E-value=7.8e-19 Score=186.99 Aligned_cols=214 Identities=20% Similarity=0.321 Sum_probs=157.1
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---------
Q 012000 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES--------- 273 (473)
Q Consensus 203 ~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~--------- 273 (473)
...+.++++|.+|++++|++..++.|+..+. ...+.++||+||||||||++|+++.+++
T Consensus 52 ~~~~~~~~rp~~f~~iiGqs~~i~~l~~al~------------~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~ 119 (531)
T TIGR02902 52 TEPLSEKTRPKSFDEIIGQEEGIKALKAALC------------GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFK 119 (531)
T ss_pred cchHHHhhCcCCHHHeeCcHHHHHHHHHHHh------------CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcC
Confidence 4577888999999999999999999986642 1224689999999999999999998652
Q ss_pred -CCcEEEEecCcc-------chhhhh------------------------hhhhhhcceeeeeccccccccCcchHHHHH
Q 012000 274 -QATFFNVSASSL-------TSKWVG------------------------EGEKLVRTLFMIDSIMSTRMANENDASRRL 321 (473)
Q Consensus 274 -~~~~~~v~~~~l-------~~~~~g------------------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~ 321 (473)
+.+|+.+++... ....++ ..+..-..+++||+++... ...
T Consensus 120 ~~~~fi~id~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L~--------~~~ 191 (531)
T TIGR02902 120 EGAAFVEIDATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGELH--------PVQ 191 (531)
T ss_pred CCCCEEEEccccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhCC--------HHH
Confidence 367899987631 111111 1112234688899995443 344
Q ss_pred HHHHHHHhcCcC-------------------------CCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHH
Q 012000 322 KSEFLIQFDGVT-------------------------SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRL 376 (473)
Q Consensus 322 ~~~ll~~ldg~~-------------------------~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~ 376 (473)
.+.|+..|+.-. ..+.+..++++||+.|+.+++++++||.. ++|+.++.+++..
T Consensus 192 q~~LL~~Le~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~~~-I~f~pL~~eei~~ 270 (531)
T TIGR02902 192 MNKLLKVLEDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRCVE-IFFRPLLDEEIKE 270 (531)
T ss_pred HHHHHHHHHhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhhhe-eeCCCCCHHHHHH
Confidence 555555443210 01112245556678899999999999965 7888889999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 377 LLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 377 il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
|++..+.+.++.++++.++.|+..+. +++++.++++.|+..+..+ ....|+.+|+.+++..
T Consensus 271 Il~~~a~k~~i~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~-----------~~~~It~~dI~~vl~~ 331 (531)
T TIGR02902 271 IAKNAAEKIGINLEKHALELIVKYAS--NGREAVNIVQLAAGIALGE-----------GRKRILAEDIEWVAEN 331 (531)
T ss_pred HHHHHHHHcCCCcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhC-----------CCcEEcHHHHHHHhCC
Confidence 99999999999999999998887664 7999999999998776543 1246999999999873
No 53
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.1e-18 Score=182.52 Aligned_cols=187 Identities=14% Similarity=0.237 Sum_probs=139.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++++++.|...+. ....++++|||||||||||++|+++|+.+++
T Consensus 4 l~~kyRP~~~~divGq~~i~~~L~~~i~-----------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~ 72 (472)
T PRK14962 4 LYRKYRPKTFSEVVGQDHVKKLIINALK-----------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCN 72 (472)
T ss_pred hHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCc
Confidence 3467899999999999999999988774 2234567999999999999999999998764
Q ss_pred --------------cEEEEecCccch-hhhhh---h-----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-KWVGE---G-----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-~~~g~---~-----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.++++.-.+ ..+.. . ...-+.+++|||++.. .....+.|+..++.
T Consensus 73 ~c~~c~~i~~g~~~dv~el~aa~~~gid~iR~i~~~~~~~p~~~~~kVvIIDE~h~L--------t~~a~~~LLk~LE~- 143 (472)
T PRK14962 73 ECRACRSIDEGTFMDVIELDAASNRGIDEIRKIRDAVGYRPMEGKYKVYIIDEVHML--------TKEAFNALLKTLEE- 143 (472)
T ss_pred ccHHHHHHhcCCCCccEEEeCcccCCHHHHHHHHHHHhhChhcCCeEEEEEEChHHh--------HHHHHHHHHHHHHh-
Confidence 466666642110 00000 0 0012357889999433 33445667777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+++|++|+.+..+++++++||. .+.|..|+.++...+++..+...++.++++.+..|+..+.| +.+++.++
T Consensus 144 ---p~~~vv~Ilattn~~kl~~~L~SR~~-vv~f~~l~~~el~~~L~~i~~~egi~i~~eal~~Ia~~s~G-dlR~aln~ 218 (472)
T PRK14962 144 ---PPSHVVFVLATTNLEKVPPTIISRCQ-VIEFRNISDELIIKRLQEVAEAEGIEIDREALSFIAKRASG-GLRDALTM 218 (472)
T ss_pred ---CCCcEEEEEEeCChHhhhHHHhcCcE-EEEECCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-CHHHHHHH
Confidence 34557778788788899999999996 58999999999999999999888999999999999999888 45555555
Q ss_pred HHHHH
Q 012000 413 CEEAA 417 (473)
Q Consensus 413 ~~~A~ 417 (473)
++.++
T Consensus 219 Le~l~ 223 (472)
T PRK14962 219 LEQVW 223 (472)
T ss_pred HHHHH
Confidence 55543
No 54
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=1.3e-18 Score=184.23 Aligned_cols=188 Identities=19% Similarity=0.243 Sum_probs=145.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+..+++|.+|+||+|++.+++.|..++. ..+.++++||+||||||||++|+++|+.+++
T Consensus 5 LarKyRPktFddVIGQe~vv~~L~~aI~-----------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg 73 (702)
T PRK14960 5 LARKYRPRNFNELVGQNHVSRALSSALE-----------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCE 73 (702)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCc
Confidence 4567899999999999999999999885 2344578999999999999999999999865
Q ss_pred --------------cEEEEecCccch-----hhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-----KWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-----~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++++-.. ...... ...-..+++||+++.. .....+.|+..++
T Consensus 74 ~C~sC~~I~~g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L--------S~~A~NALLKtLE-- 143 (702)
T PRK14960 74 VCATCKAVNEGRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML--------STHSFNALLKTLE-- 143 (702)
T ss_pred cCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc--------CHHHHHHHHHHHh--
Confidence 455555542110 001100 0012358889999433 3345677888877
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++..+.+|++|+.+..+.+.+++||.. +.|..++.++....++..+.+.++.+++..+..|+..+.| +.+++.++
T Consensus 144 --EPP~~v~FILaTtd~~kIp~TIlSRCq~-feFkpLs~eEI~k~L~~Il~kEgI~id~eAL~~IA~~S~G-dLRdALnL 219 (702)
T PRK14960 144 --EPPEHVKFLFATTDPQKLPITVISRCLQ-FTLRPLAVDEITKHLGAILEKEQIAADQDAIWQIAESAQG-SLRDALSL 219 (702)
T ss_pred --cCCCCcEEEEEECChHhhhHHHHHhhhe-eeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 3345678888888899999999999954 8999999999999999999999999999999999999988 78888888
Q ss_pred HHHHHH
Q 012000 413 CEEAAM 418 (473)
Q Consensus 413 ~~~A~~ 418 (473)
+..+..
T Consensus 220 LDQaIa 225 (702)
T PRK14960 220 TDQAIA 225 (702)
T ss_pred HHHHHH
Confidence 877654
No 55
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.9e-18 Score=176.32 Aligned_cols=188 Identities=21% Similarity=0.233 Sum_probs=140.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++.+++.|+..+. ....++.+||+||||||||++|+++|+.+.+
T Consensus 6 l~~kyrP~~~~~iiGq~~~~~~l~~~~~-----------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~ 74 (363)
T PRK14961 6 LARKWRPQYFRDIIGQKHIVTAISNGLS-----------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCR 74 (363)
T ss_pred HHHHhCCCchhhccChHHHHHHHHHHHH-----------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567899999999999999999998885 2234567899999999999999999998753
Q ss_pred --------------cEEEEecCc-cchhhhhhhh--------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASS-LTSKWVGEGE--------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~-l~~~~~g~~~--------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++.. .....+.+.. ..-..++.|||++.. .....+.|+..++.
T Consensus 75 ~c~~c~~~~~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l--------~~~a~naLLk~lEe- 145 (363)
T PRK14961 75 KCIICKEIEKGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHML--------SRHSFNALLKTLEE- 145 (363)
T ss_pred CCHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhc--------CHHHHHHHHHHHhc-
Confidence 233344321 1000000000 011357889998443 23345667777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+.+|.+|+.++.+.+++++||. .+.|++|+.++...+++..+...++.++++.+..++..+.| +.+++.++
T Consensus 146 ---~~~~~~fIl~t~~~~~l~~tI~SRc~-~~~~~~l~~~el~~~L~~~~~~~g~~i~~~al~~ia~~s~G-~~R~al~~ 220 (363)
T PRK14961 146 ---PPQHIKFILATTDVEKIPKTILSRCL-QFKLKIISEEKIFNFLKYILIKESIDTDEYALKLIAYHAHG-SMRDALNL 220 (363)
T ss_pred ---CCCCeEEEEEcCChHhhhHHHHhhce-EEeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34557778788888899999999995 58999999999999999999988888899999999999988 77888888
Q ss_pred HHHHHH
Q 012000 413 CEEAAM 418 (473)
Q Consensus 413 ~~~A~~ 418 (473)
++.++.
T Consensus 221 l~~~~~ 226 (363)
T PRK14961 221 LEHAIN 226 (363)
T ss_pred HHHHHH
Confidence 877653
No 56
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=1.7e-18 Score=182.98 Aligned_cols=187 Identities=21% Similarity=0.243 Sum_probs=145.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|+||+|++.+++.|+.++. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 6 l~~kyRP~~f~divGq~~v~~~L~~~~~-----------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg 74 (509)
T PRK14958 6 LARKWRPRCFQEVIGQAPVVRALSNALD-----------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCN 74 (509)
T ss_pred HHHHHCCCCHHHhcCCHHHHHHHHHHHH-----------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCC
Confidence 4568899999999999999999999885 23345679999999999999999999988652
Q ss_pred ---------------EEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 277 ---------------FFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 277 ---------------~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
++.+++++-. .+...+. .-..+++|||++.. .....+.|+..|+
T Consensus 75 ~C~~C~~i~~g~~~d~~eidaas~~--~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~l--------s~~a~naLLk~LE 144 (509)
T PRK14958 75 DCENCREIDEGRFPDLFEVDAASRT--KVEDTRELLDNIPYAPTKGRFKVYLIDEVHML--------SGHSFNALLKTLE 144 (509)
T ss_pred CCHHHHHHhcCCCceEEEEcccccC--CHHHHHHHHHHHhhccccCCcEEEEEEChHhc--------CHHHHHHHHHHHh
Confidence 5666654211 1111111 12358889999443 3445677888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
.++.++.+|.+|+.++.+.+.+++||.. +.|..++.++....++..+...++.+++..+..|+..+.| +.+++.
T Consensus 145 ----epp~~~~fIlattd~~kl~~tI~SRc~~-~~f~~l~~~~i~~~l~~il~~egi~~~~~al~~ia~~s~G-slR~al 218 (509)
T PRK14958 145 ----EPPSHVKFILATTDHHKLPVTVLSRCLQ-FHLAQLPPLQIAAHCQHLLKEENVEFENAALDLLARAANG-SVRDAL 218 (509)
T ss_pred ----ccCCCeEEEEEECChHhchHHHHHHhhh-hhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHH
Confidence 4456688888888999999999999954 8899888998888889999999999999999999999988 788998
Q ss_pred HHHHHHHHH
Q 012000 411 ALCEEAAMM 419 (473)
Q Consensus 411 ~l~~~A~~~ 419 (473)
++++.++..
T Consensus 219 ~lLdq~ia~ 227 (509)
T PRK14958 219 SLLDQSIAY 227 (509)
T ss_pred HHHHHHHhc
Confidence 998877543
No 57
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=6.4e-18 Score=183.68 Aligned_cols=187 Identities=23% Similarity=0.307 Sum_probs=144.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|+||+|++.+++.|+.++. ..+.++.+||+||||||||++|+++|+.+++.
T Consensus 6 LaeKyRP~tFddIIGQe~Iv~~LknaI~-----------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg 74 (944)
T PRK14949 6 LARKWRPATFEQMVGQSHVLHALTNALT-----------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCG 74 (944)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCC
Confidence 4567899999999999999999998875 22345678999999999999999999998653
Q ss_pred ---------------EEEEecCc-c----chhhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 277 ---------------FFNVSASS-L----TSKWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 277 ---------------~~~v~~~~-l----~~~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
++.+++.+ . +....... ......|++|||++ .......+.||..|+
T Consensus 75 ~C~sC~~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh--------~LT~eAqNALLKtLE-- 144 (944)
T PRK14949 75 VCSSCVEIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVH--------MLSRSSFNALLKTLE-- 144 (944)
T ss_pred CchHHHHHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechH--------hcCHHHHHHHHHHHh--
Confidence 13333321 0 00011100 01124688899994 445667788898887
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++.++++|++|+.+..|.+.|++||.. +.|..++.++....|++.+...++.+++..+..|+..+.| +.+++.++
T Consensus 145 --EPP~~vrFILaTTe~~kLl~TIlSRCq~-f~fkpLs~eEI~~~L~~il~~EgI~~edeAL~lIA~~S~G-d~R~ALnL 220 (944)
T PRK14949 145 --EPPEHVKFLLATTDPQKLPVTVLSRCLQ-FNLKSLTQDEIGTQLNHILTQEQLPFEAEALTLLAKAANG-SMRDALSL 220 (944)
T ss_pred --ccCCCeEEEEECCCchhchHHHHHhheE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 4456688888899999999999999954 8999999999999999988888888899999999999999 78888888
Q ss_pred HHHHH
Q 012000 413 CEEAA 417 (473)
Q Consensus 413 ~~~A~ 417 (473)
|..+.
T Consensus 221 LdQal 225 (944)
T PRK14949 221 TDQAI 225 (944)
T ss_pred HHHHH
Confidence 87766
No 58
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=5.8e-18 Score=181.41 Aligned_cols=188 Identities=23% Similarity=0.316 Sum_probs=145.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+..+++|.+|+||+|++.+++.|...+. ....++.+||+||+|||||++|+++|+.+++
T Consensus 6 La~KyRP~~f~divGQe~vv~~L~~~l~-----------~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (647)
T PRK07994 6 LARKWRPQTFAEVVGQEHVLTALANALD-----------LGRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCG 74 (647)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCC
Confidence 4467899999999999999999998885 2234567899999999999999999998865
Q ss_pred --------------cEEEEecCc-cc-h---hhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASS-LT-S---KWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~-l~-~---~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++.+ .. . ...... ...-..|++|||++ .......+.||+.|+
T Consensus 75 ~C~~C~~i~~g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah--------~Ls~~a~NALLKtLE-- 144 (647)
T PRK07994 75 ECDNCREIEQGRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVH--------MLSRHSFNALLKTLE-- 144 (647)
T ss_pred CCHHHHHHHcCCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechH--------hCCHHHHHHHHHHHH--
Confidence 245555442 10 0 011110 01123588899994 344556788898887
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++.++++|++|+.+..|.+.|++|| ..+.|..++.++....+...+...++.+++..+..|+..+.| +.++..++
T Consensus 145 --EPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i~~e~~aL~~Ia~~s~G-s~R~Al~l 220 (647)
T PRK07994 145 --EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQIPFEPRALQLLARAADG-SMRDALSL 220 (647)
T ss_pred --cCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 45667888888999999999999998 558999999999999999999888888889999999999999 77787788
Q ss_pred HHHHHH
Q 012000 413 CEEAAM 418 (473)
Q Consensus 413 ~~~A~~ 418 (473)
+..|..
T Consensus 221 ldqaia 226 (647)
T PRK07994 221 TDQAIA 226 (647)
T ss_pred HHHHHH
Confidence 876653
No 59
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=6.5e-18 Score=176.20 Aligned_cols=187 Identities=19% Similarity=0.223 Sum_probs=146.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ----------- 274 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~----------- 274 (473)
+..+|+|.+|+||+|++.+++.|+.++. ..+.++++||+||||+|||++|+.+|+.++
T Consensus 3 la~KyRP~~f~dliGQe~vv~~L~~a~~-----------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg 71 (491)
T PRK14964 3 LALKYRPSSFKDLVGQDVLVRILRNAFT-----------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCG 71 (491)
T ss_pred hhHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCcc
Confidence 3467899999999999999999988774 334567899999999999999999998653
Q ss_pred -------------CcEEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 275 -------------ATFFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 275 -------------~~~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
..++.+++++-.+ +..... .-..++.||+++. ......+.|+..++
T Consensus 72 ~C~~C~~i~~~~~~Dv~eidaas~~~--vddIR~Iie~~~~~P~~~~~KVvIIDEah~--------Ls~~A~NaLLK~LE 141 (491)
T PRK14964 72 TCHNCISIKNSNHPDVIEIDAASNTS--VDDIKVILENSCYLPISSKFKVYIIDEVHM--------LSNSAFNALLKTLE 141 (491)
T ss_pred ccHHHHHHhccCCCCEEEEecccCCC--HHHHHHHHHHHHhccccCCceEEEEeChHh--------CCHHHHHHHHHHHh
Confidence 2456666653211 111111 1235778999833 33445678888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
.++..+.+|.+|+.+..+.+.+++||.. +.|..++.++....+...+.+.++.++++.+..|++.+.| +.+++.
T Consensus 142 ----ePp~~v~fIlatte~~Kl~~tI~SRc~~-~~f~~l~~~el~~~L~~ia~~Egi~i~~eAL~lIa~~s~G-slR~al 215 (491)
T PRK14964 142 ----EPAPHVKFILATTEVKKIPVTIISRCQR-FDLQKIPTDKLVEHLVDIAKKENIEHDEESLKLIAENSSG-SMRNAL 215 (491)
T ss_pred ----CCCCCeEEEEEeCChHHHHHHHHHhhee-eecccccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4456688888888889999999999965 8999999999999999999999999999999999999987 788888
Q ss_pred HHHHHHHHH
Q 012000 411 ALCEEAAMM 419 (473)
Q Consensus 411 ~l~~~A~~~ 419 (473)
++++.++..
T Consensus 216 slLdqli~y 224 (491)
T PRK14964 216 FLLEQAAIY 224 (491)
T ss_pred HHHHHHHHh
Confidence 888887654
No 60
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=5.3e-18 Score=176.55 Aligned_cols=223 Identities=22% Similarity=0.237 Sum_probs=173.9
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC----CcEEEEecCccchh---
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSASSLTSK--- 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~----~~~~~v~~~~l~~~--- 288 (473)
.|++-...+|+..-+....|. ....+|||+||+|||||.|+++++.++. +++..++|+.+...
T Consensus 408 ~d~i~~~s~kke~~n~~~spv----------~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e 477 (952)
T KOG0735|consen 408 HDFIQVPSYKKENANQELSPV----------FRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLE 477 (952)
T ss_pred Cceeecchhhhhhhhhhcccc----------cccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHH
Confidence 677778888888777555552 1235899999999999999999999874 56778888876443
Q ss_pred --------hhhhhhhhhcceeeeeccccccc-----cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 289 --------WVGEGEKLVRTLFMIDSIMSTRM-----ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 289 --------~~g~~~~~~~~if~IDei~~~~~-----~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
++.+..+.-+.++.+|+++...+ .++.+.....+..++.++-......+..+.||++.+....|++-
T Consensus 478 ~iQk~l~~vfse~~~~~PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~ 557 (952)
T KOG0735|consen 478 KIQKFLNNVFSEALWYAPSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPL 557 (952)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChh
Confidence 45555666677888888876544 23444455566677755544443445668999999999999998
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccccc
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 433 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~ 433 (473)
|-+ +|+.++.+|.|+..+|.+||+..+.+........+++.++..|+||...||..++++|...++.+... .
T Consensus 558 L~s~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~~~~~dLd~ls~~TEGy~~~DL~ifVeRai~~a~leris------~ 631 (952)
T KOG0735|consen 558 LVSPLLFQIVIALPAPAVTRRKEILTTIFSKNLSDITMDDLDFLSVKTEGYLATDLVIFVERAIHEAFLERIS------N 631 (952)
T ss_pred hcCccceEEEEecCCcchhHHHHHHHHHHHhhhhhhhhHHHHHHHHhcCCccchhHHHHHHHHHHHHHHHHhc------c
Confidence 887 89999999999999999999999998766666778888999999999999999999999999854211 1
Q ss_pred ccCCCCcHHHHHHHHHhhCCCC
Q 012000 434 NQLRPLRYEDFQKAMAVIRPSL 455 (473)
Q Consensus 434 ~~~~~it~~df~~al~~~~ps~ 455 (473)
..+-+|.++|.++|+.+.|..
T Consensus 632 -~~klltke~f~ksL~~F~P~a 652 (952)
T KOG0735|consen 632 -GPKLLTKELFEKSLKDFVPLA 652 (952)
T ss_pred -CcccchHHHHHHHHHhcChHH
Confidence 123799999999999999854
No 61
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=6.8e-18 Score=180.20 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=145.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+..+++|.+|+||+|++.+++.|+.++. ..+.++++||+||+|||||++|+++|+.+++.
T Consensus 6 LarKYRP~tFddIIGQe~vv~~L~~ai~-----------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg 74 (709)
T PRK08691 6 LARKWRPKTFADLVGQEHVVKALQNALD-----------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCG 74 (709)
T ss_pred HHHHhCCCCHHHHcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCc
Confidence 4568899999999999999999999885 23446789999999999999999999987542
Q ss_pred ---------------EEEEecCccch-----hhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 277 ---------------FFNVSASSLTS-----KWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 277 ---------------~~~v~~~~l~~-----~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
++.+++..-.. ..+... ...-..|++||+++.. .....+.||..|+.
T Consensus 75 ~C~sCr~i~~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L--------s~~A~NALLKtLEE- 145 (709)
T PRK08691 75 VCQSCTQIDAGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML--------SKSAFNAMLKTLEE- 145 (709)
T ss_pred ccHHHHHHhccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc--------CHHHHHHHHHHHHh-
Confidence 23343322110 011100 0011358889998432 33456778888873
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+.+|++|+.+..+.+.+++||.. +.|+.++.++....+...+...++.+++..+..|++.+.| +.+++.++
T Consensus 146 ---Pp~~v~fILaTtd~~kL~~TIrSRC~~-f~f~~Ls~eeI~~~L~~Il~kEgi~id~eAL~~Ia~~A~G-slRdAlnL 220 (709)
T PRK08691 146 ---PPEHVKFILATTDPHKVPVTVLSRCLQ-FVLRNMTAQQVADHLAHVLDSEKIAYEPPALQLLGRAAAG-SMRDALSL 220 (709)
T ss_pred ---CCCCcEEEEEeCCccccchHHHHHHhh-hhcCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHHhCC-CHHHHHHH
Confidence 345578888899999999999999954 8999999999999999999999999999999999999988 78899899
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.++..
T Consensus 221 LDqaia~ 227 (709)
T PRK08691 221 LDQAIAL 227 (709)
T ss_pred HHHHHHh
Confidence 8877654
No 62
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=1.6e-17 Score=174.43 Aligned_cols=187 Identities=22% Similarity=0.268 Sum_probs=143.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
...+++|.+|+|++|++.+++.|+..+. ....++++||+||||||||++|+++|+.+++.
T Consensus 11 la~kyRP~~f~dliGq~~vv~~L~~ai~-----------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~ 79 (507)
T PRK06645 11 FARKYRPSNFAELQGQEVLVKVLSYTIL-----------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTI 79 (507)
T ss_pred hhhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCc
Confidence 4567899999999999999999988764 23446789999999999999999999988642
Q ss_pred -------------------EEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHH
Q 012000 277 -------------------FFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFL 326 (473)
Q Consensus 277 -------------------~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll 326 (473)
++.+++.+-. .+..... .-+.++.||+++.. .....+.|+
T Consensus 80 ~~C~~C~~C~~i~~~~h~Dv~eidaas~~--~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~L--------s~~a~naLL 149 (507)
T PRK06645 80 KTCEQCTNCISFNNHNHPDIIEIDAASKT--SVDDIRRIIESAEYKPLQGKHKIFIIDEVHML--------SKGAFNALL 149 (507)
T ss_pred CCCCCChHHHHHhcCCCCcEEEeeccCCC--CHHHHHHHHHHHHhccccCCcEEEEEEChhhc--------CHHHHHHHH
Confidence 2333322100 0111111 11357779998433 334566777
Q ss_pred HHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCH
Q 012000 327 IQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG 406 (473)
Q Consensus 327 ~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~ 406 (473)
..++ .++..+++|.+|+.++.+.+++++||. ++.|..++.++...+++..+...++.++++.+..|+..+.| +.
T Consensus 150 k~LE----epp~~~vfI~aTte~~kI~~tI~SRc~-~~ef~~ls~~el~~~L~~i~~~egi~ie~eAL~~Ia~~s~G-sl 223 (507)
T PRK06645 150 KTLE----EPPPHIIFIFATTEVQKIPATIISRCQ-RYDLRRLSFEEIFKLLEYITKQENLKTDIEALRIIAYKSEG-SA 223 (507)
T ss_pred HHHh----hcCCCEEEEEEeCChHHhhHHHHhcce-EEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CH
Confidence 7776 345567888888888999999999995 58999999999999999999999999999999999999998 78
Q ss_pred HHHHHHHHHHHHH
Q 012000 407 SDLQALCEEAAMM 419 (473)
Q Consensus 407 ~dL~~l~~~A~~~ 419 (473)
+++.++++.++..
T Consensus 224 R~al~~Ldkai~~ 236 (507)
T PRK06645 224 RDAVSILDQAASM 236 (507)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887654
No 63
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.77 E-value=3.4e-17 Score=156.60 Aligned_cols=187 Identities=15% Similarity=0.177 Sum_probs=138.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC------cEE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA------TFF 278 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~------~~~ 278 (473)
..+++|+|.+|+|++|++.+++.|+..+.. .-..++|||||||||||+.|+++|+++.. .+.
T Consensus 25 swteKYrPkt~de~~gQe~vV~~L~~a~~~------------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl 92 (346)
T KOG0989|consen 25 SWTEKYRPKTFDELAGQEHVVQVLKNALLR------------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVL 92 (346)
T ss_pred chHHHhCCCcHHhhcchHHHHHHHHHHHhh------------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchh
Confidence 356678999999999999999999999852 22358999999999999999999999865 233
Q ss_pred EEecCccchhhhhhh--------hhhh----------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 279 NVSASSLTSKWVGEG--------EKLV----------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 279 ~v~~~~l~~~~~g~~--------~~~~----------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
+.++++..+..+... .... -.+|.|||.+ .........|...|+.. ...+
T Consensus 93 ~lnaSderGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcd--------smtsdaq~aLrr~mE~~----s~~t 160 (346)
T KOG0989|consen 93 ELNASDERGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECD--------SMTSDAQAALRRTMEDF----SRTT 160 (346)
T ss_pred hhcccccccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechh--------hhhHHHHHHHHHHHhcc----ccce
Confidence 444444332221110 0001 1578899984 34455667777788743 4557
Q ss_pred EEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 341 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 341 ~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
.+|..||.+..|...+.+||.+ +.|+....+.....|+.+..++++.++++.+..|+..++|.-. +-...++.++
T Consensus 161 rFiLIcnylsrii~pi~SRC~K-frFk~L~d~~iv~rL~~Ia~~E~v~~d~~al~~I~~~S~GdLR-~Ait~Lqsls 235 (346)
T KOG0989|consen 161 RFILICNYLSRIIRPLVSRCQK-FRFKKLKDEDIVDRLEKIASKEGVDIDDDALKLIAKISDGDLR-RAITTLQSLS 235 (346)
T ss_pred EEEEEcCChhhCChHHHhhHHH-hcCCCcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCCcHH-HHHHHHHHhh
Confidence 8899999999999999999988 6777777777777789999999999999999999999999433 3333444443
No 64
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=1.1e-17 Score=178.82 Aligned_cols=187 Identities=22% Similarity=0.289 Sum_probs=144.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++.+++.|+.++. ....++.+|||||+|||||++|+++|+.+++
T Consensus 6 la~KyRP~~f~dviGQe~vv~~L~~~l~-----------~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~ 74 (618)
T PRK14951 6 LARKYRPRSFSEMVGQEHVVQALTNALT-----------QQRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGIT 74 (618)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCC
Confidence 4568899999999999999999999885 2334567899999999999999999998864
Q ss_pred -------------------cEEEEecCccchhhhhhhhhh-----------hcceeeeeccccccccCcchHHHHHHHHH
Q 012000 276 -------------------TFFNVSASSLTSKWVGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 276 -------------------~~~~v~~~~l~~~~~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
.++.+++.+-. .+...... -..+++|||++. ......+.|
T Consensus 75 ~~pCg~C~~C~~i~~g~h~D~~eldaas~~--~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~--------Ls~~a~NaL 144 (618)
T PRK14951 75 ATPCGVCQACRDIDSGRFVDYTELDAASNR--GVDEVQQLLEQAVYKPVQGRFKVFMIDEVHM--------LTNTAFNAM 144 (618)
T ss_pred CCCCCccHHHHHHHcCCCCceeecCccccc--CHHHHHHHHHHHHhCcccCCceEEEEEChhh--------CCHHHHHHH
Confidence 24444443211 01111111 135888999944 334456778
Q ss_pred HHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 012000 326 LIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 326 l~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s 405 (473)
+..++ .++..+.+|.+|+.+..+.+.+++||. .+.|..++.++....++..+.+.++.+++..+..|+..+.| +
T Consensus 145 LKtLE----EPP~~~~fIL~Ttd~~kil~TIlSRc~-~~~f~~Ls~eei~~~L~~i~~~egi~ie~~AL~~La~~s~G-s 218 (618)
T PRK14951 145 LKTLE----EPPEYLKFVLATTDPQKVPVTVLSRCL-QFNLRPMAPETVLEHLTQVLAAENVPAEPQALRLLARAARG-S 218 (618)
T ss_pred HHhcc----cCCCCeEEEEEECCchhhhHHHHHhce-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 87776 445667888888889999999999995 48999999999999999999999999999999999999998 7
Q ss_pred HHHHHHHHHHHHHH
Q 012000 406 GSDLQALCEEAAMM 419 (473)
Q Consensus 406 ~~dL~~l~~~A~~~ 419 (473)
.+++.+++..+...
T Consensus 219 lR~al~lLdq~ia~ 232 (618)
T PRK14951 219 MRDALSLTDQAIAF 232 (618)
T ss_pred HHHHHHHHHHHHHh
Confidence 88888888766544
No 65
>PLN03025 replication factor C subunit; Provisional
Probab=99.76 E-value=2.7e-17 Score=165.24 Aligned_cols=183 Identities=16% Similarity=0.143 Sum_probs=135.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEE
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNV 280 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v 280 (473)
.+++|+|.+|+|++|++++++.|+.++.. .. ..++|||||||||||++|+++|+++. ..++.+
T Consensus 3 w~~kyrP~~l~~~~g~~~~~~~L~~~~~~-----------~~-~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~el 70 (319)
T PLN03025 3 WVEKYRPTKLDDIVGNEDAVSRLQVIARD-----------GN-MPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLEL 70 (319)
T ss_pred hhhhcCCCCHHHhcCcHHHHHHHHHHHhc-----------CC-CceEEEECCCCCCHHHHHHHHHHHHhcccCccceeee
Confidence 46789999999999999999999887641 11 24699999999999999999999972 346777
Q ss_pred ecCccchh-----hhhhh-h------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 281 SASSLTSK-----WVGEG-E------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 281 ~~~~l~~~-----~~g~~-~------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
++++..+. .+... . ..-..++.|||++... ....+.|+..|+.. .....+|.+||.
T Consensus 71 n~sd~~~~~~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~lt--------~~aq~aL~~~lE~~----~~~t~~il~~n~ 138 (319)
T PLN03025 71 NASDDRGIDVVRNKIKMFAQKKVTLPPGRHKIVILDEADSMT--------SGAQQALRRTMEIY----SNTTRFALACNT 138 (319)
T ss_pred cccccccHHHHHHHHHHHHhccccCCCCCeEEEEEechhhcC--------HHHHHHHHHHHhcc----cCCceEEEEeCC
Confidence 77654221 11100 0 0124688899996543 22345556666532 223457778888
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
+..+.+++++||. .+.|+.|+.++....++..+.+.++.++++.+..|+..+.| ..+.+.+.++
T Consensus 139 ~~~i~~~L~SRc~-~i~f~~l~~~~l~~~L~~i~~~egi~i~~~~l~~i~~~~~g-DlR~aln~Lq 202 (319)
T PLN03025 139 SSKIIEPIQSRCA-IVRFSRLSDQEILGRLMKVVEAEKVPYVPEGLEAIIFTADG-DMRQALNNLQ 202 (319)
T ss_pred ccccchhHHHhhh-cccCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 9999999999985 58999999999999999999999999999999999999888 4444444455
No 66
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.6e-17 Score=173.55 Aligned_cols=188 Identities=22% Similarity=0.312 Sum_probs=141.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC---------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--------- 275 (473)
.+.++++|.+|+||+|++.+++.|+.++.. ...++.+|||||||||||++|+++|+.+.+
T Consensus 3 ~l~~KyRP~~~~dvvGq~~v~~~L~~~i~~-----------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg 71 (504)
T PRK14963 3 ALYQRARPITFDEVVGQEHVKEVLLAALRQ-----------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCG 71 (504)
T ss_pred hHHHhhCCCCHHHhcChHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCC
Confidence 355789999999999999999999998852 234566799999999999999999998753
Q ss_pred --------------cEEEEecCccch-hhhhhhhh--------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-KWVGEGEK--------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-~~~g~~~~--------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++.+-.. ..+.+... .-+.++.|||.+.. .....+.|+..++.
T Consensus 72 ~C~sc~~i~~~~h~dv~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l--------s~~a~naLLk~LEe- 142 (504)
T PRK14963 72 ECESCLAVRRGAHPDVLEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMM--------SKSAFNALLKTLEE- 142 (504)
T ss_pred cChhhHHHhcCCCCceEEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECcccc--------CHHHHHHHHHHHHh-
Confidence 144555432110 00001000 11357779998432 34456777777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
+...+++|.+|+.+..+.+.+++||. .+.|+.|+.++....++..+...++.++++.+..|+..+.| +.+++.++
T Consensus 143 ---p~~~t~~Il~t~~~~kl~~~I~SRc~-~~~f~~ls~~el~~~L~~i~~~egi~i~~~Al~~ia~~s~G-dlR~aln~ 217 (504)
T PRK14963 143 ---PPEHVIFILATTEPEKMPPTILSRTQ-HFRFRRLTEEEIAGKLRRLLEAEGREAEPEALQLVARLADG-AMRDAESL 217 (504)
T ss_pred ---CCCCEEEEEEcCChhhCChHHhcceE-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34457788888999999999999987 48999999999999999999999999999999999999998 66777777
Q ss_pred HHHHH
Q 012000 413 CEEAA 417 (473)
Q Consensus 413 ~~~A~ 417 (473)
++.++
T Consensus 218 Lekl~ 222 (504)
T PRK14963 218 LERLL 222 (504)
T ss_pred HHHHH
Confidence 77654
No 67
>PRK04195 replication factor C large subunit; Provisional
Probab=99.75 E-value=2.8e-17 Score=173.87 Aligned_cols=182 Identities=23% Similarity=0.269 Sum_probs=137.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
-+++|+|.+|+||+|++.+++.|.+++.... .+.+++++|||||||||||++|+++|++++..++.+++++.
T Consensus 4 W~eKyrP~~l~dlvg~~~~~~~l~~~l~~~~--------~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~ 75 (482)
T PRK04195 4 WVEKYRPKTLSDVVGNEKAKEQLREWIESWL--------KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQ 75 (482)
T ss_pred chhhcCCCCHHHhcCCHHHHHHHHHHHHHHh--------cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEccccc
Confidence 3678999999999999999999999985321 12346899999999999999999999999999999998865
Q ss_pred ch-----hhhhhhhh------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH
Q 012000 286 TS-----KWVGEGEK------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 354 (473)
Q Consensus 286 ~~-----~~~g~~~~------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~ 354 (473)
.. .+++.... .-+.++.||+++......+ ......++..+.. .. ..+|++||.++.+.+
T Consensus 76 r~~~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~d----~~~~~aL~~~l~~----~~--~~iIli~n~~~~~~~ 145 (482)
T PRK04195 76 RTADVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNED----RGGARAILELIKK----AK--QPIILTANDPYDPSL 145 (482)
T ss_pred ccHHHHHHHHHHhhccCcccCCCCeEEEEecCcccccccc----hhHHHHHHHHHHc----CC--CCEEEeccCccccch
Confidence 32 12222111 1246788999976543211 1233455555542 12 346667899998887
Q ss_pred -HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCH
Q 012000 355 -AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG 406 (473)
Q Consensus 355 -al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~ 406 (473)
.+++|+ ..|.|+.|+..++..+++.++...++.+++..+..|++.+.|.-.
T Consensus 146 k~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi~i~~eaL~~Ia~~s~GDlR 197 (482)
T PRK04195 146 RELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGIECDDEALKEIAERSGGDLR 197 (482)
T ss_pred hhHhccc-eEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCCCHH
Confidence 666676 459999999999999999999999999999999999999887333
No 68
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=2.3e-17 Score=174.36 Aligned_cols=189 Identities=19% Similarity=0.247 Sum_probs=142.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++.+++.|...+. ....++.+||+||||||||++|+++|+.+.+
T Consensus 6 La~KyRP~~f~diiGq~~~v~~L~~~i~-----------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg 74 (546)
T PRK14957 6 LARKYRPQSFAEVAGQQHALNSLVHALE-----------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCN 74 (546)
T ss_pred HHHHHCcCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 4567899999999999999999998885 2234567999999999999999999998754
Q ss_pred --------------cEEEEecCccch-----hhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-----KWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-----~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++..-.. ...... ...-+.+++||+++. ......+.||..|+
T Consensus 75 ~C~sC~~i~~~~~~dlieidaas~~gvd~ir~ii~~~~~~p~~g~~kViIIDEa~~--------ls~~a~naLLK~LE-- 144 (546)
T PRK14957 75 KCENCVAINNNSFIDLIEIDAASRTGVEETKEILDNIQYMPSQGRYKVYLIDEVHM--------LSKQSFNALLKTLE-- 144 (546)
T ss_pred ccHHHHHHhcCCCCceEEeecccccCHHHHHHHHHHHHhhhhcCCcEEEEEechhh--------ccHHHHHHHHHHHh--
Confidence 344444321100 011110 111245888999843 33456678888887
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.+++.+++|++|+.+..+.+.+++|| ..++|..++.++....+...+.+.++.+++..+..|+..+.| +.+++.++
T Consensus 145 --epp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi~~e~~Al~~Ia~~s~G-dlR~alnl 220 (546)
T PRK14957 145 --EPPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENINSDEQSLEYIAYHAKG-SLRDALSL 220 (546)
T ss_pred --cCCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34556777878888899998999999 458999999999999999999888999999999999999987 78888888
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.++..
T Consensus 221 Lek~i~~ 227 (546)
T PRK14957 221 LDQAISF 227 (546)
T ss_pred HHHHHHh
Confidence 8776643
No 69
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.75 E-value=2e-17 Score=173.78 Aligned_cols=205 Identities=23% Similarity=0.309 Sum_probs=152.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhh-----------cceeeeeccccccccCcchH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRMANENDA 317 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~~ 317 (473)
...+||+|+||||||++++++|+++|.+++.++|.++.....+..+..+ +.++++-.++-...+.++..
T Consensus 431 ~~~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~pavifl~~~dvl~id~dgge 510 (953)
T KOG0736|consen 431 NPSVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGE 510 (953)
T ss_pred ceEEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcCceEEEEeccceeeecCCCch
Confidence 3479999999999999999999999999999999988776554444333 35555444443333333344
Q ss_pred HHHHHHHHHHHhc-CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHH
Q 012000 318 SRRLKSEFLIQFD-GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLER 396 (473)
Q Consensus 318 ~~~~~~~ll~~ld-g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~ 396 (473)
..++...+-.++. ........+++||++|+..+.+++.+++-|...|.++.|+.++|.+||+.++....+. .+..+..
T Consensus 511 d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~n-~~v~~k~ 589 (953)
T KOG0736|consen 511 DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPLN-QDVNLKQ 589 (953)
T ss_pred hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccccc-hHHHHHH
Confidence 4555554444443 2222345679999999999999999999999999999999999999999999887765 6788999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc---------ccccccCCCCcHHHHHHHHHhhCCC
Q 012000 397 LVRETEGYSGSDLQALCEEAAMMPIRELGTNIL---------TVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 397 La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~---------~~~~~~~~~it~~df~~al~~~~ps 454 (473)
+|..|.||+.+|+..++..+...+..++.+... .........|+++||.+++.+++..
T Consensus 590 ~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~edf~kals~~~~~ 656 (953)
T KOG0736|consen 590 LARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEEDFDKALSRLQKE 656 (953)
T ss_pred HHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHHHHHHHHHHHHh
Confidence 999999999999999998885555444433110 0111223689999999999987643
No 70
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=3e-17 Score=174.45 Aligned_cols=187 Identities=23% Similarity=0.291 Sum_probs=142.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++.+++.|..++. ....++.+||+||||+|||++|+++|+.+++
T Consensus 6 l~~k~rP~~f~divGq~~v~~~L~~~i~-----------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg 74 (527)
T PRK14969 6 LARKWRPKSFSELVGQEHVVRALTNALE-----------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCG 74 (527)
T ss_pred HHHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567899999999999999999998885 2234567899999999999999999998865
Q ss_pred --------------cEEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 276 --------------TFFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 276 --------------~~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
.++.++++.-. .+...+. .-+.+++||+++.. .....+.||..++
T Consensus 75 ~C~~C~~i~~~~~~d~~ei~~~~~~--~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~l--------s~~a~naLLK~LE 144 (527)
T PRK14969 75 VCSACLEIDSGRFVDLIEVDAASNT--QVDAMRELLDNAQYAPTRGRFKVYIIDEVHML--------SKSAFNAMLKTLE 144 (527)
T ss_pred CCHHHHHHhcCCCCceeEeeccccC--CHHHHHHHHHHHhhCcccCCceEEEEcCcccC--------CHHHHHHHHHHHh
Confidence 23344432110 0111111 11357889998433 3345677888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
. ++..+++|++|+.++.+.+.+++||. .+.|+.++.++....+...+...++.+++..+..|+..+.| +.+++.
T Consensus 145 e----pp~~~~fIL~t~d~~kil~tI~SRc~-~~~f~~l~~~~i~~~L~~il~~egi~~~~~al~~la~~s~G-slr~al 218 (527)
T PRK14969 145 E----PPEHVKFILATTDPQKIPVTVLSRCL-QFNLKQMPPPLIVSHLQHILEQENIPFDATALQLLARAAAG-SMRDAL 218 (527)
T ss_pred C----CCCCEEEEEEeCChhhCchhHHHHHH-HHhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3 45568888888889999988999994 59999999999999999999888888889999999999888 788888
Q ss_pred HHHHHHHHH
Q 012000 411 ALCEEAAMM 419 (473)
Q Consensus 411 ~l~~~A~~~ 419 (473)
++++.+...
T Consensus 219 ~lldqai~~ 227 (527)
T PRK14969 219 SLLDQAIAY 227 (527)
T ss_pred HHHHHHHHh
Confidence 888877544
No 71
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.74 E-value=8.1e-17 Score=167.25 Aligned_cols=185 Identities=28% Similarity=0.395 Sum_probs=134.4
Q ss_pred cccCCCCCCcccccChHHHHHH---HHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQA---LMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~---L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
+.++++|.+|+|++|++++... |.+++.. ....++||+||||||||++|+++|+.++..|+.+++
T Consensus 2 la~~~RP~~l~d~vGq~~~v~~~~~L~~~i~~------------~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a 69 (413)
T PRK13342 2 LAERMRPKTLDEVVGQEHLLGPGKPLRRMIEA------------GRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSA 69 (413)
T ss_pred hhhhhCCCCHHHhcCcHHHhCcchHHHHHHHc------------CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEec
Confidence 3567889999999999999666 7777631 123589999999999999999999999999999987
Q ss_pred Cccchh----hhhhhhh----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec--CCCCCC
Q 012000 283 SSLTSK----WVGEGEK----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQEL 352 (473)
Q Consensus 283 ~~l~~~----~~g~~~~----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT--n~~~~L 352 (473)
...... .+..... .-+.+++|||++... ......|+..++. ..+++|++| |....+
T Consensus 70 ~~~~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l~--------~~~q~~LL~~le~------~~iilI~att~n~~~~l 135 (413)
T PRK13342 70 VTSGVKDLREVIEEARQRRSAGRRTILFIDEIHRFN--------KAQQDALLPHVED------GTITLIGATTENPSFEV 135 (413)
T ss_pred ccccHHHHHHHHHHHHHhhhcCCceEEEEechhhhC--------HHHHHHHHHHhhc------CcEEEEEeCCCChhhhc
Confidence 643221 1111111 134688899995432 3344556666542 336667665 445589
Q ss_pred CHHHhcccccccccCCCcHHHHHHHHHHHhccC--CC-CCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 353 DDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQ--AF-SLPGGDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 353 d~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~--~~-~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
++++++|| ..+.++.++.++...+++..+... ++ .++++.+..|++.+.| ..+.+.++++.++.
T Consensus 136 ~~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s~G-d~R~aln~Le~~~~ 202 (413)
T PRK13342 136 NPALLSRA-QVFELKPLSEEDIEQLLKRALEDKERGLVELDDEALDALARLANG-DARRALNLLELAAL 202 (413)
T ss_pred cHHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 99999999 568999999999999999887642 44 6788899999999977 56666677766643
No 72
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.74 E-value=5.9e-17 Score=173.39 Aligned_cols=189 Identities=21% Similarity=0.271 Sum_probs=143.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+..+++|.+|+||+|++.+++.|+.++.. ...++.+|||||+|||||++|+.+|+.+++
T Consensus 6 l~~k~rP~~f~~viGq~~v~~~L~~~i~~-----------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~ 74 (559)
T PRK05563 6 LYRKWRPQTFEDVVGQEHITKTLKNAIKQ-----------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCN 74 (559)
T ss_pred HHHHhCCCcHHhccCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 44678999999999999999999998852 334677999999999999999999998753
Q ss_pred --------------cEEEEecCccch-hhhhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-KWVGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-~~~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.++++.-.. ..+.+. ...-..+++||+++.. .....+.|+..++
T Consensus 75 ~C~~C~~i~~g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~L--------t~~a~naLLKtLE-- 144 (559)
T PRK05563 75 ECEICKAITNGSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHML--------STGAFNALLKTLE-- 144 (559)
T ss_pred ccHHHHHHhcCCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccC--------CHHHHHHHHHHhc--
Confidence 345555432110 000000 0112457889998443 3345677888776
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++..+++|.+|+.++.+.+.+++||.. +.|+.|+..+....++..+.+.++.+++..+..|+..+.| +.+++.++
T Consensus 145 --epp~~~ifIlatt~~~ki~~tI~SRc~~-~~f~~~~~~ei~~~L~~i~~~egi~i~~~al~~ia~~s~G-~~R~al~~ 220 (559)
T PRK05563 145 --EPPAHVIFILATTEPHKIPATILSRCQR-FDFKRISVEDIVERLKYILDKEGIEYEDEALRLIARAAEG-GMRDALSI 220 (559)
T ss_pred --CCCCCeEEEEEeCChhhCcHHHHhHheE-EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 4455678888888899999999999975 8899999999999999999999999999999999999988 77888788
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.+...
T Consensus 221 Ldq~~~~ 227 (559)
T PRK05563 221 LDQAISF 227 (559)
T ss_pred HHHHHHh
Confidence 7766543
No 73
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=7.8e-17 Score=171.83 Aligned_cols=186 Identities=18% Similarity=0.219 Sum_probs=143.4
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-----------
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA----------- 275 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~----------- 275 (473)
.++++|.+|+||+|++.+++.|+.++. ....++.+||+||+|||||++|+++|+.+++
T Consensus 4 ~~kyRP~~f~eivGq~~i~~~L~~~i~-----------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~ 72 (584)
T PRK14952 4 YRKYRPATFAEVVGQEHVTEPLSSALD-----------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGV 72 (584)
T ss_pred HHHhCCCcHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccc
Confidence 467899999999999999999999885 2334567899999999999999999998753
Q ss_pred ---------------cEEEEecCccchhhhhhhh-----------hhhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 276 ---------------TFFNVSASSLTSKWVGEGE-----------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~-----------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
.++.++++... -+.+.. ..-..+++||+.+.. .....+.||..|
T Consensus 73 C~~C~~i~~~~~~~~dvieidaas~~--gvd~iRel~~~~~~~P~~~~~KVvIIDEah~L--------t~~A~NALLK~L 142 (584)
T PRK14952 73 CESCVALAPNGPGSIDVVELDAASHG--GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMV--------TTAGFNALLKIV 142 (584)
T ss_pred cHHHHHhhcccCCCceEEEecccccc--CHHHHHHHHHHHHhhhhcCCceEEEEECCCcC--------CHHHHHHHHHHH
Confidence 23444443211 011111 112458889998544 334677888888
Q ss_pred cCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHH
Q 012000 330 DGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDL 409 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL 409 (473)
+ .++.++++|++|+.++.|.+.|++||. ++.|..++.++....+..++...++.+++..+..++..+.| +.+++
T Consensus 143 E----Epp~~~~fIL~tte~~kll~TI~SRc~-~~~F~~l~~~~i~~~L~~i~~~egi~i~~~al~~Ia~~s~G-dlR~a 216 (584)
T PRK14952 143 E----EPPEHLIFIFATTEPEKVLPTIRSRTH-HYPFRLLPPRTMRALIARICEQEGVVVDDAVYPLVIRAGGG-SPRDT 216 (584)
T ss_pred h----cCCCCeEEEEEeCChHhhHHHHHHhce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 7 445668888888989999999999975 58999999999999999999999998999999999998887 77888
Q ss_pred HHHHHHHHHH
Q 012000 410 QALCEEAAMM 419 (473)
Q Consensus 410 ~~l~~~A~~~ 419 (473)
.++++.++..
T Consensus 217 ln~Ldql~~~ 226 (584)
T PRK14952 217 LSVLDQLLAG 226 (584)
T ss_pred HHHHHHHHhc
Confidence 8888876543
No 74
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.74 E-value=4.5e-17 Score=175.03 Aligned_cols=189 Identities=20% Similarity=0.238 Sum_probs=144.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|+||+|++++++.|+.++. ....++.+|||||+|+|||++|+++|+.+++.
T Consensus 6 l~~k~RP~~f~~iiGq~~v~~~L~~~i~-----------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~ 74 (576)
T PRK14965 6 LARKYRPQTFSDLTGQEHVSRTLQNAID-----------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCN 74 (576)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCC
Confidence 4567899999999999999999999885 23446778999999999999999999987532
Q ss_pred ---------------EEEEecCcc-chhhhhhhh--------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 277 ---------------FFNVSASSL-TSKWVGEGE--------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 277 ---------------~~~v~~~~l-~~~~~g~~~--------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
++.+++..- ....+.+.. ..-..+++||+++. ......+.|+..|+
T Consensus 75 ~c~~c~~i~~g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~--------Lt~~a~naLLk~LE-- 144 (576)
T PRK14965 75 VCPPCVEITEGRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHM--------LSTNAFNALLKTLE-- 144 (576)
T ss_pred ccHHHHHHhcCCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhh--------CCHHHHHHHHHHHH--
Confidence 445554321 000011100 11135778999843 33445678888887
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++.++++|.+|+.++.|.+.+++||. ++.|..++.++....+...+...++.+++..+..|+..+.| +.+++.++
T Consensus 145 --epp~~~~fIl~t~~~~kl~~tI~SRc~-~~~f~~l~~~~i~~~L~~i~~~egi~i~~~al~~la~~a~G-~lr~al~~ 220 (576)
T PRK14965 145 --EPPPHVKFIFATTEPHKVPITILSRCQ-RFDFRRIPLQKIVDRLRYIADQEGISISDAALALVARKGDG-SMRDSLST 220 (576)
T ss_pred --cCCCCeEEEEEeCChhhhhHHHHHhhh-hhhcCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 445668888889999999999999996 48999999999999999999999999999999999999998 67777777
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.+...
T Consensus 221 Ldqliay 227 (576)
T PRK14965 221 LDQVLAF 227 (576)
T ss_pred HHHHHHh
Confidence 7766544
No 75
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=5.9e-17 Score=174.64 Aligned_cols=189 Identities=20% Similarity=0.299 Sum_probs=141.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc--------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-------- 276 (473)
.+.++++|.+|+||+|++.+++.|+.++. ....++.+|||||||+|||++|+++|+.+.+.
T Consensus 7 ~l~~KyRP~~f~dIiGQe~~v~~L~~aI~-----------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~p 75 (725)
T PRK07133 7 ALYRKYRPKTFDDIVGQDHIVQTLKNIIK-----------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEP 75 (725)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCc
Confidence 34567899999999999999999999885 22346789999999999999999999987542
Q ss_pred -------------EEEEecCc-c----chhhhhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC
Q 012000 277 -------------FFNVSASS-L----TSKWVGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 334 (473)
Q Consensus 277 -------------~~~v~~~~-l----~~~~~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~ 334 (473)
++.+++.. . +....... ...-+.|+.||+++... ....+.||..|+
T Consensus 76 C~~C~~~~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT--------~~A~NALLKtLE---- 143 (725)
T PRK07133 76 CQECIENVNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS--------KSAFNALLKTLE---- 143 (725)
T ss_pred hhHHHHhhcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC--------HHHHHHHHHHhh----
Confidence 12222211 0 00000000 00123577899985433 345677888887
Q ss_pred CCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 335 NPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 335 ~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
.++..+++|++|+.++.|.+.+++||. ++.|..|+.++....+...+...++.+++..+..||..+.| +.+++..+++
T Consensus 144 EPP~~tifILaTte~~KLl~TI~SRcq-~ieF~~L~~eeI~~~L~~il~kegI~id~eAl~~LA~lS~G-slR~AlslLe 221 (725)
T PRK07133 144 EPPKHVIFILATTEVHKIPLTILSRVQ-RFNFRRISEDEIVSRLEFILEKENISYEKNALKLIAKLSSG-SLRDALSIAE 221 (725)
T ss_pred cCCCceEEEEEcCChhhhhHHHHhhce-eEEccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHH
Confidence 445668888888899999999999996 58999999999999999998888888888999999999998 6777777777
Q ss_pred HHHH
Q 012000 415 EAAM 418 (473)
Q Consensus 415 ~A~~ 418 (473)
.++.
T Consensus 222 kl~~ 225 (725)
T PRK07133 222 QVSI 225 (725)
T ss_pred HHHH
Confidence 6543
No 76
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=1.1e-16 Score=176.75 Aligned_cols=185 Identities=20% Similarity=0.238 Sum_probs=142.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++|++.+|++|+|++.+++.|+.++. ..+.++.+||+||+|||||++|++||+.+++
T Consensus 5 l~~KyRP~~f~eiiGqe~v~~~L~~~i~-----------~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg 73 (824)
T PRK07764 5 LYRRYRPATFAEVIGQEHVTEPLSTALD-----------SGRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCG 73 (824)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCc
Confidence 4578999999999999999999999885 2334567999999999999999999999864
Q ss_pred ----------------cEEEEecCccchhhhhhhh-----------hhhcceeeeeccccccccCcchHHHHHHHHHHHH
Q 012000 276 ----------------TFFNVSASSLTSKWVGEGE-----------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQ 328 (473)
Q Consensus 276 ----------------~~~~v~~~~l~~~~~g~~~-----------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ 328 (473)
.|+.+++.... .+...+ ..-..||+||+++.+ .....+.||+.
T Consensus 74 ~C~sC~~~~~g~~~~~dv~eidaas~~--~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l--------t~~a~NaLLK~ 143 (824)
T PRK07764 74 ECDSCVALAPGGPGSLDVTEIDAASHG--GVDDARELRERAFFAPAESRYKIFIIDEAHMV--------TPQGFNALLKI 143 (824)
T ss_pred ccHHHHHHHcCCCCCCcEEEecccccC--CHHHHHHHHHHHHhchhcCCceEEEEechhhc--------CHHHHHHHHHH
Confidence 23444442211 011111 112358889999443 34567788888
Q ss_pred hcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 012000 329 FDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 329 ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
|+ +...+++||++|+.++.|.+.|++||.. +.|..++.++...+|..++...++.+++..+..|+..+.| +.++
T Consensus 144 LE----EpP~~~~fIl~tt~~~kLl~TIrSRc~~-v~F~~l~~~~l~~~L~~il~~EGv~id~eal~lLa~~sgG-dlR~ 217 (824)
T PRK07764 144 VE----EPPEHLKFIFATTEPDKVIGTIRSRTHH-YPFRLVPPEVMRGYLERICAQEGVPVEPGVLPLVIRAGGG-SVRD 217 (824)
T ss_pred Hh----CCCCCeEEEEEeCChhhhhHHHHhheeE-EEeeCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHH
Confidence 87 3455688888888888999999999954 8999999999999999999999999899999999999888 7777
Q ss_pred HHHHHHHHH
Q 012000 409 LQALCEEAA 417 (473)
Q Consensus 409 L~~l~~~A~ 417 (473)
+.++++..+
T Consensus 218 Al~eLEKLi 226 (824)
T PRK07764 218 SLSVLDQLL 226 (824)
T ss_pred HHHHHHHHH
Confidence 777777655
No 77
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.73 E-value=9.7e-17 Score=169.86 Aligned_cols=187 Identities=18% Similarity=0.261 Sum_probs=142.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC---------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--------- 275 (473)
...++++|.+|++++|++.+++.|..++. ....++++||+||||+|||++|+++|+.+.+
T Consensus 5 ~~~~KyRP~~F~dIIGQe~iv~~L~~aI~-----------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~C 73 (605)
T PRK05896 5 TFYRKYRPHNFKQIIGQELIKKILVNAIL-----------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCC 73 (605)
T ss_pred hHHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCC
Confidence 35568899999999999999999998874 2334578999999999999999999998743
Q ss_pred ---------------cEEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 276 ---------------TFFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 276 ---------------~~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
.++.+++.... .+++.+. .-+.++.||+++... ....+.|+..|
T Consensus 74 g~C~sCr~i~~~~h~DiieIdaas~i--gVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt--------~~A~NaLLKtL 143 (605)
T PRK05896 74 NSCSVCESINTNQSVDIVELDAASNN--GVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS--------TSAWNALLKTL 143 (605)
T ss_pred cccHHHHHHHcCCCCceEEecccccc--CHHHHHHHHHHHHhchhhCCcEEEEEechHhCC--------HHHHHHHHHHH
Confidence 34445443210 0111111 113577899985432 23456788877
Q ss_pred cCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHH
Q 012000 330 DGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDL 409 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL 409 (473)
+ .++..+++|++|+.+..|.+++++||. ++.|+.|+..+....+...+.+.++.+++..+..|+..+.| +.+++
T Consensus 144 E----EPp~~tvfIL~Tt~~~KLl~TI~SRcq-~ieF~~Ls~~eL~~~L~~il~kegi~Is~eal~~La~lS~G-dlR~A 217 (605)
T PRK05896 144 E----EPPKHVVFIFATTEFQKIPLTIISRCQ-RYNFKKLNNSELQELLKSIAKKEKIKIEDNAIDKIADLADG-SLRDG 217 (605)
T ss_pred H----hCCCcEEEEEECCChHhhhHHHHhhhh-hcccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHH
Confidence 7 345567888888889999999999996 58999999999999999999888888899999999999988 67777
Q ss_pred HHHHHHHHH
Q 012000 410 QALCEEAAM 418 (473)
Q Consensus 410 ~~l~~~A~~ 418 (473)
.++++.++.
T Consensus 218 lnlLekL~~ 226 (605)
T PRK05896 218 LSILDQLST 226 (605)
T ss_pred HHHHHHHHh
Confidence 777776543
No 78
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.72 E-value=1.2e-16 Score=169.96 Aligned_cols=185 Identities=20% Similarity=0.249 Sum_probs=140.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc--------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------- 276 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-------- 276 (473)
.+..+++|.+|+||+|++.+++.|..++. ..+.++++||+||||||||++|+++|+.+.+.
T Consensus 5 ~la~KyRP~sf~dIiGQe~v~~~L~~ai~-----------~~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pC 73 (624)
T PRK14959 5 SLTARYRPQTFAEVAGQETVKAILSRAAQ-----------ENRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPC 73 (624)
T ss_pred hHHHHhCCCCHHHhcCCHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCC
Confidence 34567899999999999999999998885 12335689999999999999999999988652
Q ss_pred ----------------EEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 277 ----------------FFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 277 ----------------~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
++.+++..-. .+...+. .-..+++|||++.. .....+.|+..|
T Consensus 74 g~C~sC~~i~~g~hpDv~eId~a~~~--~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~L--------t~~a~naLLk~L 143 (624)
T PRK14959 74 NTCEQCRKVTQGMHVDVVEIDGASNR--GIDDAKRLKEAIGYAPMEGRYKVFIIDEAHML--------TREAFNALLKTL 143 (624)
T ss_pred cccHHHHHHhcCCCCceEEEeccccc--CHHHHHHHHHHHHhhhhcCCceEEEEEChHhC--------CHHHHHHHHHHh
Confidence 4445442110 0111111 12358889999443 344567788877
Q ss_pred cCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHH
Q 012000 330 DGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDL 409 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL 409 (473)
+. +...+++|++|+.+..+.+.+++||. .+.|+.++.++...+|+..+...++.++++.+..|+..+.| +.+++
T Consensus 144 EE----P~~~~ifILaTt~~~kll~TI~SRcq-~i~F~pLs~~eL~~~L~~il~~egi~id~eal~lIA~~s~G-dlR~A 217 (624)
T PRK14959 144 EE----PPARVTFVLATTEPHKFPVTIVSRCQ-HFTFTRLSEAGLEAHLTKVLGREGVDYDPAAVRLIARRAAG-SVRDS 217 (624)
T ss_pred hc----cCCCEEEEEecCChhhhhHHHHhhhh-ccccCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHH
Confidence 63 34558888889999999999999996 48999999999999999999888888999999999999988 55555
Q ss_pred HHHHHHH
Q 012000 410 QALCEEA 416 (473)
Q Consensus 410 ~~l~~~A 416 (473)
.++++.+
T Consensus 218 l~lLeql 224 (624)
T PRK14959 218 MSLLGQV 224 (624)
T ss_pred HHHHHHH
Confidence 5566544
No 79
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.72 E-value=1.1e-16 Score=168.45 Aligned_cols=190 Identities=22% Similarity=0.247 Sum_probs=145.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++|+|.+|+||+|++.+++.|+..+. ....++.+|||||||+|||++|+++|+.+.+
T Consensus 4 l~~KyRP~~fdeiiGqe~v~~~L~~~I~-----------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~ 72 (535)
T PRK08451 4 LALKYRPKHFDELIGQESVSKTLSLALD-----------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCD 72 (535)
T ss_pred HHHHHCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCc
Confidence 4578999999999999999999998884 2234567899999999999999999998732
Q ss_pred --------------cEEEEecCcc-----chhhhhhhh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSL-----TSKWVGEGE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l-----~~~~~g~~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++.+- +...+.... ..-..++.||+++. ......+.||..|+.
T Consensus 73 ~C~~C~~~~~~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~--------Lt~~A~NALLK~LEE- 143 (535)
T PRK08451 73 TCIQCQSALENRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHM--------LTKEAFNALLKTLEE- 143 (535)
T ss_pred ccHHHHHHhhcCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECccc--------CCHHHHHHHHHHHhh-
Confidence 3455554321 111111100 01235888999833 344566778888873
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+.+|.+|+.+..|.+++++|+. .++|..++.++....+...+...++.+++..+..|+..+.| +.+++.++
T Consensus 144 ---pp~~t~FIL~ttd~~kL~~tI~SRc~-~~~F~~Ls~~ei~~~L~~Il~~EGi~i~~~Al~~Ia~~s~G-dlR~alnl 218 (535)
T PRK08451 144 ---PPSYVKFILATTDPLKLPATILSRTQ-HFRFKQIPQNSIISHLKTILEKEGVSYEPEALEILARSGNG-SLRDTLTL 218 (535)
T ss_pred ---cCCceEEEEEECChhhCchHHHhhce-eEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHH
Confidence 34557777788888999999999985 58999999999999999999999999999999999999988 88888888
Q ss_pred HHHHHHHh
Q 012000 413 CEEAAMMP 420 (473)
Q Consensus 413 ~~~A~~~a 420 (473)
++.++..+
T Consensus 219 Ldqai~~~ 226 (535)
T PRK08451 219 LDQAIIYC 226 (535)
T ss_pred HHHHHHhc
Confidence 88877554
No 80
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.72 E-value=1.2e-16 Score=162.72 Aligned_cols=189 Identities=22% Similarity=0.297 Sum_probs=139.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
..++++|.+|++++|++.+++.|.+.+. .+..++.+|||||||+|||++|+++|+.+..
T Consensus 4 ~~~~~rp~~~~~iig~~~~~~~l~~~~~-----------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~ 72 (355)
T TIGR02397 4 LARKYRPQTFEDVIGQEHIVQTLKNAIK-----------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCN 72 (355)
T ss_pred HHHHhCCCcHhhccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 4567899999999999999999998884 2234568999999999999999999998642
Q ss_pred --------------cEEEEecCccch-----hhhhhhh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-----KWVGEGE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-----~~~g~~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++..... ....... ..-+.++.||+++.. .....+.++..++.
T Consensus 73 ~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l--------~~~~~~~Ll~~le~- 143 (355)
T TIGR02397 73 ECESCKEINSGSSLDVIEIDAASNNGVDDIREILDNVKYAPSSGKYKVYIIDEVHML--------SKSAFNALLKTLEE- 143 (355)
T ss_pred CCHHHHHHhcCCCCCEEEeeccccCCHHHHHHHHHHHhcCcccCCceEEEEeChhhc--------CHHHHHHHHHHHhC-
Confidence 244444431111 0111100 011347778988433 23345677777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+++|.+|+.+..+.+++++||. .+.+++|+..+...++..++...++.+++..+..|+..+.| +.+.+.+.
T Consensus 144 ---~~~~~~lIl~~~~~~~l~~~l~sr~~-~~~~~~~~~~~l~~~l~~~~~~~g~~i~~~a~~~l~~~~~g-~~~~a~~~ 218 (355)
T TIGR02397 144 ---PPEHVVFILATTEPHKIPATILSRCQ-RFDFKRIPLEDIVERLKKILDKEGIKIEDEALELIARAADG-SLRDALSL 218 (355)
T ss_pred ---CccceeEEEEeCCHHHHHHHHHhhee-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-ChHHHHHH
Confidence 34457777788888889999999995 58999999999999999999999998999999999999887 66777777
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.+...
T Consensus 219 lekl~~~ 225 (355)
T TIGR02397 219 LDQLISF 225 (355)
T ss_pred HHHHHhh
Confidence 7666543
No 81
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.71 E-value=2.6e-16 Score=175.07 Aligned_cols=222 Identities=21% Similarity=0.256 Sum_probs=148.4
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc---------h
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT---------S 287 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~---------~ 287 (473)
++.|++++++.|.+++..+.... .....++||+||||||||++|+++|+.++.+|+.+++..+. .
T Consensus 321 ~~~G~~~~k~~i~~~~~~~~~~~------~~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~ 394 (775)
T TIGR00763 321 DHYGLKKVKERILEYLAVQKLRG------KMKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRR 394 (775)
T ss_pred hcCChHHHHHHHHHHHHHHHhhc------CCCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCC
Confidence 58999999999999886543221 11224799999999999999999999999999998765432 1
Q ss_pred hhhhhhhh----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcC-----cCC------CCCCcEEEEeec
Q 012000 288 KWVGEGEK----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG-----VTS------NPNDLVIVMGAT 346 (473)
Q Consensus 288 ~~~g~~~~----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg-----~~~------~~~~~v~vI~tT 346 (473)
.|+|.... ....+++|||++......... ..+.|+..||. +.. ....++++|+||
T Consensus 395 ~~~g~~~g~i~~~l~~~~~~~~villDEidk~~~~~~~~----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 395 TYVGAMPGRIIQGLKKAKTKNPLFLLDEIDKIGSSFRGD----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred ceeCCCCchHHHHHHHhCcCCCEEEEechhhcCCccCCC----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 23332111 122488899998876433222 23445555542 110 011468999999
Q ss_pred CCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHh-----cc-----CCCCCChhhHHHHHHH-cCCCCHHHHHHHHHH
Q 012000 347 NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKL-----KG-----QAFSLPGGDLERLVRE-TEGYSGSDLQALCEE 415 (473)
Q Consensus 347 n~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l-----~~-----~~~~l~~~~l~~La~~-t~g~s~~dL~~l~~~ 415 (473)
|.++.+++++++||. .|.|+.|+.+++..|++.++ .. ..+.++++.+..|++. +..+..++|...+..
T Consensus 471 N~~~~i~~~L~~R~~-vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~~~~~~~~~~~l~~i~~~~~~e~g~R~l~r~i~~ 549 (775)
T TIGR00763 471 NSIDTIPRPLLDRME-VIELSGYTEEEKLEIAKKYLIPKALEDHGLKPDELKITDEALLLLIKYYTREAGVRNLERQIEK 549 (775)
T ss_pred CCchhCCHHHhCCee-EEecCCCCHHHHHHHHHHHHHHHHHHHcCCCcceEEECHHHHHHHHHhcChhcCChHHHHHHHH
Confidence 999999999999995 68999999999999998776 22 2356788899998874 334566788777777
Q ss_pred HHHHhHHHhcc-cccccccccCCCCcHHHHHHHHH
Q 012000 416 AAMMPIRELGT-NILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 416 A~~~a~~~~~~-~~~~~~~~~~~~it~~df~~al~ 449 (473)
.+..+.+++.. ........-.-.|+.+++..-+.
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg 584 (775)
T TIGR00763 550 ICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLG 584 (775)
T ss_pred HHHHHHHHHHhccCcccCCcccccCCHHHHHHhcC
Confidence 66666555432 10000000013577777766653
No 82
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.71 E-value=1.4e-16 Score=176.31 Aligned_cols=238 Identities=22% Similarity=0.299 Sum_probs=163.7
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------- 273 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------- 273 (473)
..+.+..++-.+++++|.++..+.+.+.+. .....++||+||||||||++|+++|..+
T Consensus 170 ~~l~~~~r~~~l~~~igr~~ei~~~~~~L~------------~~~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~ 237 (731)
T TIGR02639 170 VDLTEKAKNGKIDPLIGREDELERTIQVLC------------RRKKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLK 237 (731)
T ss_pred hhHHHHHhcCCCCcccCcHHHHHHHHHHHh------------cCCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhc
Confidence 344555567899999999999998877663 1224589999999999999999999987
Q ss_pred CCcEEEEecCccc--hhhhhhhhhhh-----------cceeeeeccccccccCcc-hHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 274 QATFFNVSASSLT--SKWVGEGEKLV-----------RTLFMIDSIMSTRMANEN-DASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 274 ~~~~~~v~~~~l~--~~~~g~~~~~~-----------~~if~IDei~~~~~~~~~-~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
+..++.+++..+. .+|.|+.+..+ +.|++|||++.....+.. +......+.|...+. .+.
T Consensus 238 ~~~~~~~~~~~l~a~~~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~l~------~g~ 311 (731)
T TIGR02639 238 NAKIYSLDMGSLLAGTKYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDASNLLKPALS------SGK 311 (731)
T ss_pred CCeEEEecHHHHhhhccccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHHHHHHHHHHh------CCC
Confidence 7789999887776 35555544433 457789999876543321 111122233333332 345
Q ss_pred EEEEeecCCC-----CCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCCHH---
Q 012000 340 VIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYSGS--- 407 (473)
Q Consensus 340 v~vI~tTn~~-----~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g~s~~--- 407 (473)
+.+||+||.. ...|+++.|||. .|+++.|+.+++..|++.+... +++.++++.+..++..+..|-+.
T Consensus 312 i~~IgaTt~~e~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~e~~~~v~i~~~al~~~~~ls~ryi~~r~~ 390 (731)
T TIGR02639 312 LRCIGSTTYEEYKNHFEKDRALSRRFQ-KIDVGEPSIEETVKILKGLKEKYEEFHHVKYSDEALEAAVELSARYINDRFL 390 (731)
T ss_pred eEEEEecCHHHHHHHhhhhHHHHHhCc-eEEeCCCCHHHHHHHHHHHHHHHHhccCcccCHHHHHHHHHhhhcccccccC
Confidence 8999999863 367999999997 5999999999999999966543 46678999999999988876533
Q ss_pred --HHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC--C--CCCHHHHHHHHHHH
Q 012000 408 --DLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR--P--SLNKSKWEELEQWN 467 (473)
Q Consensus 408 --dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~--p--s~~~~~~~~~~~w~ 467 (473)
-.-.|+++|+... ++.. .......|+.+|+..++.... | .++.++.+.+....
T Consensus 391 P~kai~lld~a~a~~--~~~~-----~~~~~~~v~~~~i~~~i~~~tgiP~~~~~~~~~~~l~~l~ 449 (731)
T TIGR02639 391 PDKAIDVIDEAGASF--RLRP-----KAKKKANVSVKDIENVVAKMAHIPVKTVSVDDREKLKNLE 449 (731)
T ss_pred CHHHHHHHHHhhhhh--hcCc-----ccccccccCHHHHHHHHHHHhCCChhhhhhHHHHHHHHHH
Confidence 2345566654322 1111 001234699999999998874 3 23445555555433
No 83
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=4.9e-16 Score=160.50 Aligned_cols=189 Identities=17% Similarity=0.215 Sum_probs=137.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|++|+|++.+++.|+.++. ....++++|||||||+|||++|+++|+.+.+.
T Consensus 6 l~~k~RP~~~~eiiGq~~~~~~L~~~~~-----------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~ 74 (397)
T PRK14955 6 IARKYRPKKFADITAQEHITRTIQNSLR-----------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYL 74 (397)
T ss_pred HHHhcCCCcHhhccChHHHHHHHHHHHH-----------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCccccc
Confidence 4567899999999999999999988875 23446779999999999999999999988652
Q ss_pred -----------------------EEEEecCccc-hhhhhhhhh--------hhcceeeeeccccccccCcchHHHHHHHH
Q 012000 277 -----------------------FFNVSASSLT-SKWVGEGEK--------LVRTLFMIDSIMSTRMANENDASRRLKSE 324 (473)
Q Consensus 277 -----------------------~~~v~~~~l~-~~~~g~~~~--------~~~~if~IDei~~~~~~~~~~~~~~~~~~ 324 (473)
++.+++.... -..+..... .-+.++.||+++... ....+.
T Consensus 75 ~~~~~~c~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~--------~~~~~~ 146 (397)
T PRK14955 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS--------IAAFNA 146 (397)
T ss_pred ccCCCCCCCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC--------HHHHHH
Confidence 2233332111 001111101 113577799984433 234556
Q ss_pred HHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 012000 325 FLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 404 (473)
Q Consensus 325 ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~ 404 (473)
|+..++ +++..+++|.+|+.+..+.+++++|+. .+.|+.++.++....+...+...++.++++.+..|+..+.|
T Consensus 147 LLk~LE----ep~~~t~~Il~t~~~~kl~~tl~sR~~-~v~f~~l~~~ei~~~l~~~~~~~g~~i~~~al~~l~~~s~g- 220 (397)
T PRK14955 147 FLKTLE----EPPPHAIFIFATTELHKIPATIASRCQ-RFNFKRIPLEEIQQQLQGICEAEGISVDADALQLIGRKAQG- 220 (397)
T ss_pred HHHHHh----cCCCCeEEEEEeCChHHhHHHHHHHHH-HhhcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-
Confidence 777766 334456666677778889999999996 58999999999998999999888888999999999999988
Q ss_pred CHHHHHHHHHHHHHH
Q 012000 405 SGSDLQALCEEAAMM 419 (473)
Q Consensus 405 s~~dL~~l~~~A~~~ 419 (473)
+.+.+.+.++.+...
T Consensus 221 ~lr~a~~~L~kl~~~ 235 (397)
T PRK14955 221 SMRDAQSILDQVIAF 235 (397)
T ss_pred CHHHHHHHHHHHHHh
Confidence 677777777765544
No 84
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.71 E-value=2.6e-16 Score=159.05 Aligned_cols=183 Identities=17% Similarity=0.220 Sum_probs=129.7
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEEe
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNVS 281 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v~ 281 (473)
+++|+|.+|++++|++++++.|..++.. .. ..++|||||||||||++|+++++++. .+++.++
T Consensus 6 ~~ky~P~~~~~~~g~~~~~~~L~~~~~~-----------~~-~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~ 73 (337)
T PRK12402 6 TEKYRPALLEDILGQDEVVERLSRAVDS-----------PN-LPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFN 73 (337)
T ss_pred HHhhCCCcHHHhcCCHHHHHHHHHHHhC-----------CC-CceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEec
Confidence 4678999999999999999999988752 11 23799999999999999999999874 3467777
Q ss_pred cCccchhh-------------hhh-----------hhh------------hhcceeeeeccccccccCcchHHHHHHHHH
Q 012000 282 ASSLTSKW-------------VGE-----------GEK------------LVRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 282 ~~~l~~~~-------------~g~-----------~~~------------~~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
+.++...+ .+. ... .-..++.||+++... ......|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~--------~~~~~~L 145 (337)
T PRK12402 74 VADFFDQGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALR--------EDAQQAL 145 (337)
T ss_pred hhhhhhcchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCC--------HHHHHHH
Confidence 76543211 000 000 112477899985432 1223345
Q ss_pred HHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 012000 326 LIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 326 l~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s 405 (473)
...++... ....+|.+|+.+..+.+.+++|+. .+.+++|+.++...+++..+...++.++++.+..|+..+.| +
T Consensus 146 ~~~le~~~----~~~~~Il~~~~~~~~~~~L~sr~~-~v~~~~~~~~~~~~~l~~~~~~~~~~~~~~al~~l~~~~~g-d 219 (337)
T PRK12402 146 RRIMEQYS----RTCRFIIATRQPSKLIPPIRSRCL-PLFFRAPTDDELVDVLESIAEAEGVDYDDDGLELIAYYAGG-D 219 (337)
T ss_pred HHHHHhcc----CCCeEEEEeCChhhCchhhcCCce-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 55555332 223455566667788889999985 58999999999999999999999999999999999999866 4
Q ss_pred HHHHHHHHHH
Q 012000 406 GSDLQALCEE 415 (473)
Q Consensus 406 ~~dL~~l~~~ 415 (473)
.+.+.+.++.
T Consensus 220 lr~l~~~l~~ 229 (337)
T PRK12402 220 LRKAILTLQT 229 (337)
T ss_pred HHHHHHHHHH
Confidence 4444444443
No 85
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=2.4e-16 Score=165.70 Aligned_cols=189 Identities=20% Similarity=0.279 Sum_probs=139.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
...+++|.+|+|++|++.+++.|+.++. ....++.+|||||||+|||++|+.+|..+++
T Consensus 6 ~~~kyRP~~f~diiGq~~i~~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~ 74 (486)
T PRK14953 6 FARKYRPKFFKEVIGQEIVVRILKNAVK-----------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCG 74 (486)
T ss_pred HHHhhCCCcHHHccChHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCC
Confidence 4567899999999999999999998884 2334567899999999999999999998753
Q ss_pred --------------cEEEEecCccch-hhhhhhh--------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLTS-KWVGEGE--------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~~-~~~g~~~--------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.++++.-.. ..+.... ..-+.++.||+++.. .....+.|+..++.
T Consensus 75 ~c~nc~~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~L--------t~~a~naLLk~LEe- 145 (486)
T PRK14953 75 KCENCVEIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHML--------TKEAFNALLKTLEE- 145 (486)
T ss_pred ccHHHHHHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhc--------CHHHHHHHHHHHhc-
Confidence 123333321100 0000000 012357889998433 23345677777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+++|.+|+.++.+.+++++||. .+.|+.|+.++....+..++...++.+++..+..|+..+.| +.+++.++
T Consensus 146 ---pp~~~v~Il~tt~~~kl~~tI~SRc~-~i~f~~ls~~el~~~L~~i~k~egi~id~~al~~La~~s~G-~lr~al~~ 220 (486)
T PRK14953 146 ---PPPRTIFILCTTEYDKIPPTILSRCQ-RFIFSKPTKEQIKEYLKRICNEEKIEYEEKALDLLAQASEG-GMRDAASL 220 (486)
T ss_pred ---CCCCeEEEEEECCHHHHHHHHHHhce-EEEcCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 34446666677778889999999997 48999999999999999999999999999999999999888 67788888
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.++..
T Consensus 221 Ldkl~~~ 227 (486)
T PRK14953 221 LDQASTY 227 (486)
T ss_pred HHHHHHh
Confidence 8777543
No 86
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=2.3e-16 Score=168.30 Aligned_cols=189 Identities=16% Similarity=0.194 Sum_probs=143.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+..+++|.+|+||+|++.+++.|+.++. ....++.+|||||||+|||++|+++|+.+.+
T Consensus 6 l~~kyRP~~f~diiGqe~iv~~L~~~i~-----------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~ 74 (563)
T PRK06647 6 TATKRRPRDFNSLEGQDFVVETLKHSIE-----------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCG 74 (563)
T ss_pred HHHHhCCCCHHHccCcHHHHHHHHHHHH-----------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCc
Confidence 4467899999999999999999999885 2234567999999999999999999998754
Q ss_pred --------------cEEEEecCc-c-chhhhhh-------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASS-L-TSKWVGE-------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~-l-~~~~~g~-------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++.. . +...... ....-..++.||+++.. .....+.|+..++
T Consensus 75 ~C~~C~~i~~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L--------s~~a~naLLK~LE-- 144 (563)
T PRK06647 75 ECSSCKSIDNDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML--------SNSAFNALLKTIE-- 144 (563)
T ss_pred cchHHHHHHcCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc--------CHHHHHHHHHhhc--
Confidence 234444322 1 0110000 00112357789998433 3445677888777
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
.++..+++|++|+.+..|.+++++||.. +.|..++.++...+++..+...++.+++..+..|+..+.| +.+++.++
T Consensus 145 --epp~~~vfI~~tte~~kL~~tI~SRc~~-~~f~~l~~~el~~~L~~i~~~egi~id~eAl~lLa~~s~G-dlR~alsl 220 (563)
T PRK06647 145 --EPPPYIVFIFATTEVHKLPATIKSRCQH-FNFRLLSLEKIYNMLKKVCLEDQIKYEDEALKWIAYKSTG-SVRDAYTL 220 (563)
T ss_pred --cCCCCEEEEEecCChHHhHHHHHHhceE-EEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHH
Confidence 4456688888888889999999999975 8899999999999999999888999999999999999888 78888888
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.++..
T Consensus 221 Ldklis~ 227 (563)
T PRK06647 221 FDQVVSF 227 (563)
T ss_pred HHHHHhh
Confidence 8766543
No 87
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.70 E-value=1e-16 Score=166.83 Aligned_cols=191 Identities=21% Similarity=0.298 Sum_probs=153.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEE------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFF------ 278 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~------ 278 (473)
.+..+|+|.+|+|++|++.+...|...+. ..+-.+++||.||.|||||++||.+|+.+++.--
T Consensus 5 ~L~rKyRP~~F~evvGQe~v~~~L~nal~-----------~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC 73 (515)
T COG2812 5 VLARKYRPKTFDDVVGQEHVVKTLSNALE-----------NGRIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPC 73 (515)
T ss_pred HHHHHhCcccHHHhcccHHHHHHHHHHHH-----------hCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcc
Confidence 34568999999999999999999999985 3344678999999999999999999998865420
Q ss_pred -------EEecC---ccch------hhhhhhhhhh-----------cceeeeeccccccccCcchHHHHHHHHHHHHhcC
Q 012000 279 -------NVSAS---SLTS------KWVGEGEKLV-----------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG 331 (473)
Q Consensus 279 -------~v~~~---~l~~------~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg 331 (473)
.++.. +++. ..+.+.+... ..++.|||+ +..+....+.||+.++
T Consensus 74 ~~C~~Ck~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEv--------HMLS~~afNALLKTLE- 144 (515)
T COG2812 74 GKCISCKEINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEV--------HMLSKQAFNALLKTLE- 144 (515)
T ss_pred hhhhhhHhhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecH--------HhhhHHHHHHHhcccc-
Confidence 00000 1100 0111111111 257779998 6777888899999887
Q ss_pred cCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 012000 332 VTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 411 (473)
Q Consensus 332 ~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~ 411 (473)
.++.+|++|.+|..++.+++.+++||.+ +.|..-+.++....+..++.++++..++..+..+|+..+| |.+|...
T Consensus 145 ---EPP~hV~FIlATTe~~Kip~TIlSRcq~-f~fkri~~~~I~~~L~~i~~~E~I~~e~~aL~~ia~~a~G-s~RDals 219 (515)
T COG2812 145 ---EPPSHVKFILATTEPQKIPNTILSRCQR-FDFKRLDLEEIAKHLAAILDKEGINIEEDALSLIARAAEG-SLRDALS 219 (515)
T ss_pred ---cCccCeEEEEecCCcCcCchhhhhcccc-ccccCCCHHHHHHHHHHHHHhcCCccCHHHHHHHHHHcCC-ChhhHHH
Confidence 6788899999999999999999999976 8888889999999999999999999999999999999999 8999999
Q ss_pred HHHHHHHHh
Q 012000 412 LCEEAAMMP 420 (473)
Q Consensus 412 l~~~A~~~a 420 (473)
+++.|....
T Consensus 220 lLDq~i~~~ 228 (515)
T COG2812 220 LLDQAIAFG 228 (515)
T ss_pred HHHHHHHcc
Confidence 999987664
No 88
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.70 E-value=9.9e-16 Score=160.06 Aligned_cols=187 Identities=18% Similarity=0.229 Sum_probs=139.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+||+|++.+++.|+.++. ....++++|||||||+|||++|+++|+.+.+
T Consensus 7 ~~~kyRP~~~~diiGq~~~v~~L~~~i~-----------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c 75 (451)
T PRK06305 7 SSRKYRPQTFSEILGQDAVVAVLKNALR-----------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPC 75 (451)
T ss_pred HHHHhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCC
Confidence 3457899999999999999999998885 2334578999999999999999999998743
Q ss_pred ---------------cEEEEecCccch-hhhhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcC
Q 012000 276 ---------------TFFNVSASSLTS-KWVGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG 331 (473)
Q Consensus 276 ---------------~~~~v~~~~l~~-~~~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg 331 (473)
.++.+++....+ ..+... ...-+.++.||+++.. .....+.|+..|+.
T Consensus 76 ~~c~~C~~i~~~~~~d~~~i~g~~~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~l--------t~~~~n~LLk~lEe 147 (451)
T PRK06305 76 NQCASCKEISSGTSLDVLEIDGASHRGIEDIRQINETVLFTPSKSRYKIYIIDEVHML--------TKEAFNSLLKTLEE 147 (451)
T ss_pred cccHHHHHHhcCCCCceEEeeccccCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhh--------CHHHHHHHHHHhhc
Confidence 244444322110 011100 0112467789998433 23345677877773
Q ss_pred cCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 012000 332 VTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 411 (473)
Q Consensus 332 ~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~ 411 (473)
+++.+++|++|+.+..|.+++++||.. +.|+.++.++....+...+.+.++.++++.+..|+..+.| +.+++.+
T Consensus 148 ----p~~~~~~Il~t~~~~kl~~tI~sRc~~-v~f~~l~~~el~~~L~~~~~~eg~~i~~~al~~L~~~s~g-dlr~a~~ 221 (451)
T PRK06305 148 ----PPQHVKFFLATTEIHKIPGTILSRCQK-MHLKRIPEETIIDKLALIAKQEGIETSREALLPIARAAQG-SLRDAES 221 (451)
T ss_pred ----CCCCceEEEEeCChHhcchHHHHhceE-EeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 345677888888889999999999965 8999999999999999988888988999999999999987 5666666
Q ss_pred HHHHHH
Q 012000 412 LCEEAA 417 (473)
Q Consensus 412 l~~~A~ 417 (473)
+++...
T Consensus 222 ~Lekl~ 227 (451)
T PRK06305 222 LYDYVV 227 (451)
T ss_pred HHHHHH
Confidence 666544
No 89
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.70 E-value=5.5e-17 Score=140.77 Aligned_cols=116 Identities=36% Similarity=0.573 Sum_probs=94.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhh-----------hh-cceeeeeccccccccC---cch
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEK-----------LV-RTLFMIDSIMSTRMAN---END 316 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~-----------~~-~~if~IDei~~~~~~~---~~~ 316 (473)
|||+||||||||++|+++|+.++.+++.+++.++.+.+.+.... .. +.+++||+++...... ...
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~~~~~~~ 80 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKSQPSSSS 80 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHCSTSSSH
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccccccccc
Confidence 69999999999999999999999999999999887655444322 22 5788899998765443 555
Q ss_pred HHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHh-cccccccccCC
Q 012000 317 ASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVL-RRLVKRIYVPL 368 (473)
Q Consensus 317 ~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~-rRf~~~i~~~~ 368 (473)
....+...++..++..... ..+++||+|||.++.++++++ +||+.++++|+
T Consensus 81 ~~~~~~~~L~~~l~~~~~~-~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 81 FEQRLLNQLLSLLDNPSSK-NSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHTTTTT-SSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred ccccccceeeecccccccc-cccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 6677889999999987643 456999999999999999999 99999998874
No 90
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.69 E-value=5.9e-16 Score=165.96 Aligned_cols=187 Identities=21% Similarity=0.237 Sum_probs=141.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcE--------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF-------- 277 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~-------- 277 (473)
+..+|+|.+|+||+|++.+++.|..++. ..+.++++||+||+|+|||++|+++|+.+++..
T Consensus 14 la~KyRP~~f~dliGq~~~v~~L~~~~~-----------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~ 82 (598)
T PRK09111 14 LARKYRPQTFDDLIGQEAMVRTLTNAFE-----------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPT 82 (598)
T ss_pred HHhhhCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCc
Confidence 4567899999999999999999998885 234467899999999999999999999886532
Q ss_pred ---------------------EEEecCccchhhhhhhhhh-----------hcceeeeeccccccccCcchHHHHHHHHH
Q 012000 278 ---------------------FNVSASSLTSKWVGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 278 ---------------------~~v~~~~l~~~~~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
+.+++.... .+...+.. -+.+++||+.+.. .....+.|
T Consensus 83 ~~~cg~c~~C~~i~~g~h~Dv~e~~a~s~~--gvd~IReIie~~~~~P~~a~~KVvIIDEad~L--------s~~a~naL 152 (598)
T PRK09111 83 IDLCGVGEHCQAIMEGRHVDVLEMDAASHT--GVDDIREIIESVRYRPVSARYKVYIIDEVHML--------STAAFNAL 152 (598)
T ss_pred cccCcccHHHHHHhcCCCCceEEecccccC--CHHHHHHHHHHHHhchhcCCcEEEEEEChHhC--------CHHHHHHH
Confidence 122211100 01111111 1357778887333 33456778
Q ss_pred HHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 012000 326 LIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 326 l~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s 405 (473)
+..|+ .++..+++|.+|+.+..+.+.+++||. ++.|..|+.++....++..+.+.++.++++.+..|+..+.| +
T Consensus 153 LKtLE----ePp~~~~fIl~tte~~kll~tI~SRcq-~~~f~~l~~~el~~~L~~i~~kegi~i~~eAl~lIa~~a~G-d 226 (598)
T PRK09111 153 LKTLE----EPPPHVKFIFATTEIRKVPVTVLSRCQ-RFDLRRIEADVLAAHLSRIAAKEGVEVEDEALALIARAAEG-S 226 (598)
T ss_pred HHHHH----hCCCCeEEEEEeCChhhhhHHHHhhee-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-C
Confidence 88777 345557777788888889999999996 48999999999999999999999999999999999999988 7
Q ss_pred HHHHHHHHHHHHHH
Q 012000 406 GSDLQALCEEAAMM 419 (473)
Q Consensus 406 ~~dL~~l~~~A~~~ 419 (473)
.+++.++++.++..
T Consensus 227 lr~al~~Ldkli~~ 240 (598)
T PRK09111 227 VRDGLSLLDQAIAH 240 (598)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888888776533
No 91
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.69 E-value=2.2e-15 Score=156.39 Aligned_cols=210 Identities=23% Similarity=0.352 Sum_probs=143.3
Q ss_pred CCCCccc-ccChHH--HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 211 PSVKWED-VAGLEK--AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~d-ivGl~~--~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
+..+|++ ++|... +...++++...| .....+++||||||||||+|++++++++ +..++.+++
T Consensus 105 ~~~tfd~fi~g~~n~~a~~~~~~~~~~~----------~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~ 174 (405)
T TIGR00362 105 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSS 174 (405)
T ss_pred CCCcccccccCCcHHHHHHHHHHHHhCc----------CccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEH
Confidence 4568999 556443 344444443321 1224579999999999999999999987 577888888
Q ss_pred Cccchhhhhhhh--------hhh--cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC-
Q 012000 283 SSLTSKWVGEGE--------KLV--RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE- 351 (473)
Q Consensus 283 ~~l~~~~~g~~~--------~~~--~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~- 351 (473)
.++...+..... ..+ ..++.|||++..... .....+|+..++.+... +..+||+++..|..
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~------~~~~~~l~~~~n~~~~~--~~~iiits~~~p~~l 246 (405)
T TIGR00362 175 EKFTNDFVNALRNNKMEEFKEKYRSVDLLLIDDIQFLAGK------ERTQEEFFHTFNALHEN--GKQIVLTSDRPPKEL 246 (405)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhCCEEEEehhhhhcCC------HHHHHHHHHHHHHHHHC--CCCEEEecCCCHHHH
Confidence 877655433221 111 257889999754321 11223444444443322 22456666666654
Q ss_pred --CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 352 --LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 352 --Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+++.+++||. ..+.++.|+.++|..|++..+...++.++++.++.||....+ +.++|..++......+...
T Consensus 247 ~~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~r~l~~~l~~l~~~a~~~---- 321 (405)
T TIGR00362 247 PGLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGLELPDEVLEFIAKNIRS-NVRELEGALNRLLAYASLT---- 321 (405)
T ss_pred hhhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh----
Confidence 5688999997 468999999999999999999999999999999999999887 7888888888776555321
Q ss_pred ccccccccCCCCcHHHHHHHHHhh
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~ 451 (473)
.++||.+.+.++|...
T Consensus 322 --------~~~it~~~~~~~L~~~ 337 (405)
T TIGR00362 322 --------GKPITLELAKEALKDL 337 (405)
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 1446666666666654
No 92
>PRK06893 DNA replication initiation factor; Validated
Probab=99.68 E-value=1.2e-15 Score=146.02 Aligned_cols=210 Identities=14% Similarity=0.143 Sum_probs=132.8
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
.++.+|++++|.++.. .+ ..+. ..+..+ ....++||||||||||+|++++|+++ +.....++.....
T Consensus 10 ~~~~~fd~f~~~~~~~-~~-~~~~------~~~~~~--~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~ 79 (229)
T PRK06893 10 IDDETLDNFYADNNLL-LL-DSLR------KNFIDL--QQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQ 79 (229)
T ss_pred CCcccccccccCChHH-HH-HHHH------HHhhcc--CCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhh
Confidence 4578999999765432 11 1111 111112 12368999999999999999999986 2333333332211
Q ss_pred hhhhhhhhh-hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCC---HHHhcccc-
Q 012000 287 SKWVGEGEK-LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD---DAVLRRLV- 361 (473)
Q Consensus 287 ~~~~g~~~~-~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld---~al~rRf~- 361 (473)
......... .-..++.|||++....... ....++..++..... +..++|++++..|..++ +.+++|+.
T Consensus 80 ~~~~~~~~~~~~~dlLilDDi~~~~~~~~------~~~~l~~l~n~~~~~-~~~illits~~~p~~l~~~~~~L~sRl~~ 152 (229)
T PRK06893 80 YFSPAVLENLEQQDLVCLDDLQAVIGNEE------WELAIFDLFNRIKEQ-GKTLLLISADCSPHALSIKLPDLASRLTW 152 (229)
T ss_pred hhhHHHHhhcccCCEEEEeChhhhcCChH------HHHHHHHHHHHHHHc-CCcEEEEeCCCChHHccccchhHHHHHhc
Confidence 100010111 1135888999965432211 112344444433221 33355666667777664 88999875
Q ss_pred -cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCc
Q 012000 362 -KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLR 440 (473)
Q Consensus 362 -~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it 440 (473)
..+.++.|+.++|..+++..+...++.++++.++.|+++.+| +.+.+..++......++. +.++||
T Consensus 153 g~~~~l~~pd~e~~~~iL~~~a~~~~l~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~~~------------~~~~it 219 (229)
T PRK06893 153 GEIYQLNDLTDEQKIIVLQRNAYQRGIELSDEVANFLLKRLDR-DMHTLFDALDLLDKASLQ------------AQRKLT 219 (229)
T ss_pred CCeeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHh------------cCCCCC
Confidence 577899999999999999999888999999999999999998 677777777765333221 125688
Q ss_pred HHHHHHHHH
Q 012000 441 YEDFQKAMA 449 (473)
Q Consensus 441 ~~df~~al~ 449 (473)
...+.++|.
T Consensus 220 ~~~v~~~L~ 228 (229)
T PRK06893 220 IPFVKEILG 228 (229)
T ss_pred HHHHHHHhc
Confidence 888877763
No 93
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.3e-15 Score=163.68 Aligned_cols=189 Identities=16% Similarity=0.234 Sum_probs=137.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+..+++|.+|++|+|++.+++.|+.++. ...-++++||+||||||||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~eivGQe~i~~~L~~~i~-----------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14954 6 IARKYRPSKFADITAQEHITHTIQNSLR-----------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYL 74 (620)
T ss_pred HHHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccc
Confidence 4467899999999999999999998874 23445789999999999999999999998662
Q ss_pred -----------------------EEEEecCccc-hhhhhhhhh--------hhcceeeeeccccccccCcchHHHHHHHH
Q 012000 277 -----------------------FFNVSASSLT-SKWVGEGEK--------LVRTLFMIDSIMSTRMANENDASRRLKSE 324 (473)
Q Consensus 277 -----------------------~~~v~~~~l~-~~~~g~~~~--------~~~~if~IDei~~~~~~~~~~~~~~~~~~ 324 (473)
++.+++.... -..+-.... .-+.++.||+.+... ....+.
T Consensus 75 ~~~~~~Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt--------~~a~na 146 (620)
T PRK14954 75 QEVTEPCGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS--------TAAFNA 146 (620)
T ss_pred cccCCCCccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC--------HHHHHH
Confidence 2222221110 000000001 113577789874332 334567
Q ss_pred HHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 012000 325 FLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 404 (473)
Q Consensus 325 ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~ 404 (473)
|+..|+ .++..+++|.+|+.+..|.+.+++|+.. +.|..++.++....+...+...++.++++.++.|+..+.|
T Consensus 147 LLK~LE----ePp~~tv~IL~t~~~~kLl~TI~SRc~~-vef~~l~~~ei~~~L~~i~~~egi~I~~eal~~La~~s~G- 220 (620)
T PRK14954 147 FLKTLE----EPPPHAIFIFATTELHKIPATIASRCQR-FNFKRIPLDEIQSQLQMICRAEGIQIDADALQLIARKAQG- 220 (620)
T ss_pred HHHHHh----CCCCCeEEEEEeCChhhhhHHHHhhceE-EecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhCC-
Confidence 888777 3444566777777788999999999964 8999999999998899988888888999999999999988
Q ss_pred CHHHHHHHHHHHHHH
Q 012000 405 SGSDLQALCEEAAMM 419 (473)
Q Consensus 405 s~~dL~~l~~~A~~~ 419 (473)
+.+++.+.++.....
T Consensus 221 dlr~al~eLeKL~~y 235 (620)
T PRK14954 221 SMRDAQSILDQVIAF 235 (620)
T ss_pred CHHHHHHHHHHHHHh
Confidence 566666666655443
No 94
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=1.4e-15 Score=155.89 Aligned_cols=189 Identities=17% Similarity=0.240 Sum_probs=137.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|+|++|++.+++.|...+.. ...++++|||||||+|||++|+++|+.+..
T Consensus 7 ~~~k~rP~~~~~iig~~~~~~~l~~~i~~-----------~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~ 75 (367)
T PRK14970 7 SARKYRPQTFDDVVGQSHITNTLLNAIEN-----------NHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDF 75 (367)
T ss_pred HHHHHCCCcHHhcCCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34678999999999999999999988852 334578999999999999999999998753
Q ss_pred --cEEEEecCccc--hhh---hhhh----hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEe
Q 012000 276 --TFFNVSASSLT--SKW---VGEG----EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 344 (473)
Q Consensus 276 --~~~~v~~~~l~--~~~---~g~~----~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~ 344 (473)
.++.++..... ... ..+. -..-+.++.||+++... ....+.++..++. ++...++|.
T Consensus 76 ~~~~~~l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~--------~~~~~~ll~~le~----~~~~~~~Il 143 (367)
T PRK14970 76 SFNIFELDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS--------SAAFNAFLKTLEE----PPAHAIFIL 143 (367)
T ss_pred CcceEEeccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC--------HHHHHHHHHHHhC----CCCceEEEE
Confidence 22333322211 000 1100 00113578899984332 2345667766653 333456666
Q ss_pred ecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 012000 345 ATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 345 tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~ 419 (473)
+|+.+..+.+++++||. .+.++.|+.++...++...+.+.++.++++.+..|+..+.| +.+.+.+.++..+..
T Consensus 144 ~~~~~~kl~~~l~sr~~-~v~~~~~~~~~l~~~l~~~~~~~g~~i~~~al~~l~~~~~g-dlr~~~~~lekl~~y 216 (367)
T PRK14970 144 ATTEKHKIIPTILSRCQ-IFDFKRITIKDIKEHLAGIAVKEGIKFEDDALHIIAQKADG-ALRDALSIFDRVVTF 216 (367)
T ss_pred EeCCcccCCHHHHhcce-eEecCCccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHh
Confidence 77788899999999986 48999999999999999999999999999999999999887 667776777665543
No 95
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.68 E-value=8.6e-16 Score=167.84 Aligned_cols=186 Identities=24% Similarity=0.324 Sum_probs=134.6
Q ss_pred ccccCCCCCCcccccChHHHHH---HHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQ---ALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~---~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.+.++++|.+|+|++|++.+.. .|++++. . ....++|||||||||||++|+++|+.++.+|+.++
T Consensus 17 PLaek~RP~tldd~vGQe~ii~~~~~L~~~i~-----------~-~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~ln 84 (725)
T PRK13341 17 PLADRLRPRTLEEFVGQDHILGEGRLLRRAIK-----------A-DRVGSLILYGPPGVGKTTLARIIANHTRAHFSSLN 84 (725)
T ss_pred ChHHhcCCCcHHHhcCcHHHhhhhHHHHHHHh-----------c-CCCceEEEECCCCCCHHHHHHHHHHHhcCcceeeh
Confidence 3455678999999999999885 4555553 1 11347999999999999999999999999999888
Q ss_pred cCccch----hhhhhhhhh-----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec--CCCC
Q 012000 282 ASSLTS----KWVGEGEKL-----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQ 350 (473)
Q Consensus 282 ~~~l~~----~~~g~~~~~-----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT--n~~~ 350 (473)
+..... ..+...... ...+++|||++... ......|+..++ ...+++|++| |...
T Consensus 85 a~~~~i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln--------~~qQdaLL~~lE------~g~IiLI~aTTenp~~ 150 (725)
T PRK13341 85 AVLAGVKDLRAEVDRAKERLERHGKRTILFIDEVHRFN--------KAQQDALLPWVE------NGTITLIGATTENPYF 150 (725)
T ss_pred hhhhhhHHHHHHHHHHHHHhhhcCCceEEEEeChhhCC--------HHHHHHHHHHhc------CceEEEEEecCCChHh
Confidence 753211 111111111 23578899995432 223445555554 2347777766 3345
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhc-------cCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-------GQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~-------~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
.+++++++|+. .+.|++++.+++..+++.++. ..++.++++.+..|+..+.| ..+.+.++++.++.
T Consensus 151 ~l~~aL~SR~~-v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~G-D~R~lln~Le~a~~ 223 (725)
T PRK13341 151 EVNKALVSRSR-LFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANG-DARSLLNALELAVE 223 (725)
T ss_pred hhhhHhhcccc-ceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Confidence 78999999975 589999999999999999887 45678899999999999977 67777777777653
No 96
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.68 E-value=4.8e-16 Score=151.37 Aligned_cols=221 Identities=21% Similarity=0.301 Sum_probs=144.0
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---EEEEe
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVS 281 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---~~~v~ 281 (473)
.+.++.+|.+++|.+|++.+..+ .-.+.. +..... -..++||||||||||+||+.|+.-...+ |++++
T Consensus 127 PLaermRPktL~dyvGQ~hlv~q-~gllrs------~ieq~~--ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelS 197 (554)
T KOG2028|consen 127 PLAERMRPKTLDDYVGQSHLVGQ-DGLLRS------LIEQNR--IPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELS 197 (554)
T ss_pred ChhhhcCcchHHHhcchhhhcCc-chHHHH------HHHcCC--CCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEe
Confidence 45566789999999999887654 222211 111122 2479999999999999999999988665 88888
Q ss_pred cCccchh----hhhhhh-----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec--CCCC
Q 012000 282 ASSLTSK----WVGEGE-----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQ 350 (473)
Q Consensus 282 ~~~l~~~----~~g~~~-----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT--n~~~ 350 (473)
+..-... .+..+. ..-+.|++||||++.. +.....||-.++ ++.|++||+| |+..
T Consensus 198 At~a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN--------ksQQD~fLP~VE------~G~I~lIGATTENPSF 263 (554)
T KOG2028|consen 198 ATNAKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN--------KSQQDTFLPHVE------NGDITLIGATTENPSF 263 (554)
T ss_pred ccccchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh--------hhhhhcccceec------cCceEEEecccCCCcc
Confidence 7543221 222222 2336789999995433 223334443332 4458899887 7777
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhc------cCC-------CCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK------GQA-------FSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~------~~~-------~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
.|+.+|++||.. +.+.....+....||.+.+. +.. +.+++..++.|+..++|.....|..|--.+.
T Consensus 264 qln~aLlSRC~V-fvLekL~~n~v~~iL~raia~l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR~aLN~Lems~~ 342 (554)
T KOG2028|consen 264 QLNAALLSRCRV-FVLEKLPVNAVVTILMRAIASLGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDARAALNALEMSLS 342 (554)
T ss_pred chhHHHHhccce-eEeccCCHHHHHHHHHHHHHhhccccccCCCCCCcchhhhHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence 899999999966 55555566666777766332 111 1245668999999999988888876655544
Q ss_pred HHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 418 MMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
+.+.|.-+ .....|+.+|+.+.|..-.--+.+
T Consensus 343 m~~tr~g~--------~~~~~lSidDvke~lq~s~~~YDr 374 (554)
T KOG2028|consen 343 MFCTRSGQ--------SSRVLLSIDDVKEGLQRSHILYDR 374 (554)
T ss_pred HHHhhcCC--------cccceecHHHHHHHHhhccceecc
Confidence 44444321 123578999999999875544433
No 97
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.68 E-value=1.7e-15 Score=142.88 Aligned_cols=194 Identities=19% Similarity=0.298 Sum_probs=144.1
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
|....++.+++++|.+.+|+.|.+.....+. +.|..++||||++|||||++++++..++ |..++.|...
T Consensus 18 i~~~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl~--------G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~ 89 (249)
T PF05673_consen 18 IKHPDPIRLDDLIGIERQKEALIENTEQFLQ--------GLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKE 89 (249)
T ss_pred cCCCCCCCHHHhcCHHHHHHHHHHHHHHHHc--------CCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHH
Confidence 3445579999999999999999887753222 3467899999999999999999999876 7889999877
Q ss_pred ccch--hhhhhh-hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH------
Q 012000 284 SLTS--KWVGEG-EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD------ 354 (473)
Q Consensus 284 ~l~~--~~~g~~-~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~------ 354 (473)
++.. ..+... ..-.+-|+++|++.-.. ...-...|-..|+|--...+++|+|.+|+|+-+.+.+
T Consensus 90 ~L~~l~~l~~~l~~~~~kFIlf~DDLsFe~-------~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~d~~ 162 (249)
T PF05673_consen 90 DLGDLPELLDLLRDRPYKFILFCDDLSFEE-------GDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFSDRE 162 (249)
T ss_pred HhccHHHHHHHHhcCCCCEEEEecCCCCCC-------CcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhhhcc
Confidence 6643 222221 23356788899984211 1222355666778777677889999999998554421
Q ss_pred -----------------HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHH----HcCCCCHHHHHHHH
Q 012000 355 -----------------AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVR----ETEGYSGSDLQALC 413 (473)
Q Consensus 355 -----------------al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~----~t~g~s~~dL~~l~ 413 (473)
+|-.||...|.|..|+.++..+|+++++...++.++.+.+..-|. .-.|.||+--...+
T Consensus 163 ~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~~~~e~l~~~Al~wa~~rg~RSGRtA~QF~ 242 (249)
T PF05673_consen 163 DIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLELDEEELRQEALQWALRRGGRSGRTARQFI 242 (249)
T ss_pred CCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 344599999999999999999999999999999988766655443 34468888776666
Q ss_pred HH
Q 012000 414 EE 415 (473)
Q Consensus 414 ~~ 415 (473)
+.
T Consensus 243 ~~ 244 (249)
T PF05673_consen 243 DD 244 (249)
T ss_pred HH
Confidence 54
No 98
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.67 E-value=1.5e-15 Score=152.39 Aligned_cols=175 Identities=16% Similarity=0.136 Sum_probs=126.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
-+++++|.+|+|++|++++++.|+.++. ....++.+||+||||+|||++|++++++++.+++.+++.+.
T Consensus 11 w~~kyrP~~~~~~~~~~~~~~~l~~~~~-----------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~~ 79 (316)
T PHA02544 11 WEQKYRPSTIDECILPAADKETFKSIVK-----------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSDC 79 (316)
T ss_pred ceeccCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCcc
Confidence 4578999999999999999999998884 22335567779999999999999999999999999888761
Q ss_pred ch----hhhhhhhh-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHH
Q 012000 286 TS----KWVGEGEK-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 356 (473)
Q Consensus 286 ~~----~~~g~~~~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al 356 (473)
.. ..+..... .-..++.||+++.... ......+...++.. ...+.+|++||.+..+++++
T Consensus 80 ~~~~i~~~l~~~~~~~~~~~~~~vliiDe~d~l~~-------~~~~~~L~~~le~~----~~~~~~Ilt~n~~~~l~~~l 148 (316)
T PHA02544 80 RIDFVRNRLTRFASTVSLTGGGKVIIIDEFDRLGL-------ADAQRHLRSFMEAY----SKNCSFIITANNKNGIIEPL 148 (316)
T ss_pred cHHHHHHHHHHHHHhhcccCCCeEEEEECcccccC-------HHHHHHHHHHHHhc----CCCceEEEEcCChhhchHHH
Confidence 10 00111000 1246788999954311 11223333445432 23467888999999999999
Q ss_pred hcccccccccCCCcHHHHHHHHHHH-------hccCCCCCChhhHHHHHHHcCC
Q 012000 357 LRRLVKRIYVPLPDENVRRLLLKHK-------LKGQAFSLPGGDLERLVRETEG 403 (473)
Q Consensus 357 ~rRf~~~i~~~~P~~~~r~~il~~~-------l~~~~~~l~~~~l~~La~~t~g 403 (473)
++||. .+.++.|+.+++..++..+ +...+..++++.+..++....|
T Consensus 149 ~sR~~-~i~~~~p~~~~~~~il~~~~~~~~~~~~~~~~~i~~~al~~l~~~~~~ 201 (316)
T PHA02544 149 RSRCR-VIDFGVPTKEEQIEMMKQMIVRCKGILEAEGVEVDMKVLAALVKKNFP 201 (316)
T ss_pred Hhhce-EEEeCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhcCC
Confidence 99996 5899999999988776543 3446778888888999987776
No 99
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.67 E-value=2.1e-15 Score=151.17 Aligned_cols=187 Identities=18% Similarity=0.182 Sum_probs=133.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEE
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNV 280 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v 280 (473)
-+++|+|.+|+|++|.+++++.|+.++.. . . ..++|||||||||||++++++++++. ..++.+
T Consensus 7 w~~kyrP~~~~~~~g~~~~~~~l~~~i~~----------~-~-~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~ 74 (319)
T PRK00440 7 WVEKYRPRTLDEIVGQEEIVERLKSYVKE----------K-N-MPHLLFAGPPGTGKTTAALALARELYGEDWRENFLEL 74 (319)
T ss_pred cchhhCCCcHHHhcCcHHHHHHHHHHHhC----------C-C-CCeEEEECCCCCCHHHHHHHHHHHHcCCccccceEEe
Confidence 46789999999999999999999988741 1 1 23689999999999999999999873 345666
Q ss_pred ecCccchh-----hhhhhhh------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 281 SASSLTSK-----WVGEGEK------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 281 ~~~~l~~~-----~~g~~~~------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
++++.... .+..... .-+.++.||+++... ......|+..++... ....+|.++|.+
T Consensus 75 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~--------~~~~~~L~~~le~~~----~~~~lIl~~~~~ 142 (319)
T PRK00440 75 NASDERGIDVIRNKIKEFARTAPVGGAPFKIIFLDEADNLT--------SDAQQALRRTMEMYS----QNTRFILSCNYS 142 (319)
T ss_pred ccccccchHHHHHHHHHHHhcCCCCCCCceEEEEeCcccCC--------HHHHHHHHHHHhcCC----CCCeEEEEeCCc
Confidence 54432110 0000000 113577899985442 122345555555332 234566678888
Q ss_pred CCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 350 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 350 ~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
..+.+++.+|+.. +.+++|+.++...+++.++.+.++.+++..+..|+..+.| +.+.+.+.++.++.
T Consensus 143 ~~l~~~l~sr~~~-~~~~~l~~~ei~~~l~~~~~~~~~~i~~~al~~l~~~~~g-d~r~~~~~l~~~~~ 209 (319)
T PRK00440 143 SKIIDPIQSRCAV-FRFSPLKKEAVAERLRYIAENEGIEITDDALEAIYYVSEG-DMRKAINALQAAAA 209 (319)
T ss_pred cccchhHHHHhhe-eeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHH
Confidence 8888899999875 8999999999999999999999999999999999999888 45555555555443
No 100
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.67 E-value=6.7e-15 Score=141.38 Aligned_cols=206 Identities=14% Similarity=0.100 Sum_probs=133.7
Q ss_pred CCCCccccc-C-hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCcc
Q 012000 211 PSVKWEDVA-G-LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (473)
Q Consensus 211 ~~~~~~div-G-l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l 285 (473)
+..+|++++ | ...+...+.++... .....++||||||||||+|++++++++. ..+..++....
T Consensus 17 ~~~~fd~f~~~~n~~a~~~l~~~~~~------------~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~ 84 (235)
T PRK08084 17 DDETFASFYPGDNDSLLAALQNALRQ------------EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKR 84 (235)
T ss_pred CcCCccccccCccHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHH
Confidence 456888877 4 56667666665421 1234799999999999999999998764 33444444332
Q ss_pred chhhhhhhhhhh--cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC---CCHHHhccc
Q 012000 286 TSKWVGEGEKLV--RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE---LDDAVLRRL 360 (473)
Q Consensus 286 ~~~~~g~~~~~~--~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~---Ld~al~rRf 360 (473)
... ..+..+.+ ..++.|||++...... .... .|...++..... +...+++++++.|.. +.+.+++||
T Consensus 85 ~~~-~~~~~~~~~~~dlliiDdi~~~~~~~--~~~~----~lf~l~n~~~e~-g~~~li~ts~~~p~~l~~~~~~L~SRl 156 (235)
T PRK08084 85 AWF-VPEVLEGMEQLSLVCIDNIECIAGDE--LWEM----AIFDLYNRILES-GRTRLLITGDRPPRQLNLGLPDLASRL 156 (235)
T ss_pred hhh-hHHHHHHhhhCCEEEEeChhhhcCCH--HHHH----HHHHHHHHHHHc-CCCeEEEeCCCChHHcCcccHHHHHHH
Confidence 211 11111111 2477899996543221 1111 222222222111 111355555566665 579999999
Q ss_pred c--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCC
Q 012000 361 V--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRP 438 (473)
Q Consensus 361 ~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 438 (473)
. .++.+..|+.+++.++++..+...++.++++.++.|+.+++| +.+.+..+++.....++. ..++
T Consensus 157 ~~g~~~~l~~~~~~~~~~~l~~~a~~~~~~l~~~v~~~L~~~~~~-d~r~l~~~l~~l~~~~l~------------~~~~ 223 (235)
T PRK08084 157 DWGQIYKLQPLSDEEKLQALQLRARLRGFELPEDVGRFLLKRLDR-EMRTLFMTLDQLDRASIT------------AQRK 223 (235)
T ss_pred hCCceeeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhhcC-CHHHHHHHHHHHHHHHHh------------cCCC
Confidence 6 678999999999999999988888899999999999999998 788888888775433322 1256
Q ss_pred CcHHHHHHHHH
Q 012000 439 LRYEDFQKAMA 449 (473)
Q Consensus 439 it~~df~~al~ 449 (473)
||...+.+++.
T Consensus 224 it~~~~k~~l~ 234 (235)
T PRK08084 224 LTIPFVKEILK 234 (235)
T ss_pred CCHHHHHHHHc
Confidence 88887777663
No 101
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.67 E-value=5.5e-15 Score=141.24 Aligned_cols=204 Identities=15% Similarity=0.187 Sum_probs=140.5
Q ss_pred CCCCCccccc--ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 210 SPSVKWEDVA--GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 210 ~~~~~~~div--Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.++.+|++++ +.+.+...+++++. +.....+++|+||||||||+||+++++++ +..++.+++..
T Consensus 12 ~~~~~~d~f~~~~~~~~~~~l~~~~~-----------~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~ 80 (227)
T PRK08903 12 PPPPTFDNFVAGENAELVARLRELAA-----------GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAAS 80 (227)
T ss_pred CChhhhcccccCCcHHHHHHHHHHHh-----------ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHH
Confidence 4568899977 34666677666553 12335689999999999999999999875 66788888776
Q ss_pred cchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC--CCCHHHhccc--
Q 012000 285 LTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--ELDDAVLRRL-- 360 (473)
Q Consensus 285 l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~--~Ld~al~rRf-- 360 (473)
+.... . ...-..++.||+++.... .....++..++..... ...+++++++..|. .+.+.+++||
T Consensus 81 ~~~~~-~--~~~~~~~liiDdi~~l~~--------~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~~~L~sr~~~ 148 (227)
T PRK08903 81 PLLAF-D--FDPEAELYAVDDVERLDD--------AQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLREDLRTRLGW 148 (227)
T ss_pred hHHHH-h--hcccCCEEEEeChhhcCc--------hHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCCHHHHHHHhc
Confidence 54321 1 111246788999964321 1223344444333211 22234444333332 3568888888
Q ss_pred ccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCc
Q 012000 361 VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLR 440 (473)
Q Consensus 361 ~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it 440 (473)
...+.+++|+...+..++..++...++.++++.++.|+..++| +.+++..+++.....+... .++||
T Consensus 149 ~~~i~l~pl~~~~~~~~l~~~~~~~~v~l~~~al~~L~~~~~g-n~~~l~~~l~~l~~~~~~~------------~~~i~ 215 (227)
T PRK08903 149 GLVYELKPLSDADKIAALKAAAAERGLQLADEVPDYLLTHFRR-DMPSLMALLDALDRYSLEQ------------KRPVT 215 (227)
T ss_pred CeEEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh------------CCCCC
Confidence 4678999999999999999988888899999999999998777 8899999888754443222 26799
Q ss_pred HHHHHHHHH
Q 012000 441 YEDFQKAMA 449 (473)
Q Consensus 441 ~~df~~al~ 449 (473)
...+.++|.
T Consensus 216 ~~~~~~~l~ 224 (227)
T PRK08903 216 LPLLREMLA 224 (227)
T ss_pred HHHHHHHHh
Confidence 988888875
No 102
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.66 E-value=3.7e-15 Score=156.63 Aligned_cols=210 Identities=21% Similarity=0.323 Sum_probs=146.9
Q ss_pred CCCCccccc-C--hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~div-G--l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
|..+|++++ | ...+...++++...| .....+++||||||||||+|++++++++ +..++.+++
T Consensus 117 ~~~tfd~fv~g~~n~~a~~~~~~~~~~~----------~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~ 186 (450)
T PRK00149 117 PKYTFDNFVVGKSNRLAHAAALAVAENP----------GKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTS 186 (450)
T ss_pred CCCcccccccCCCcHHHHHHHHHHHhCc----------CccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEH
Confidence 556899854 5 333555555554322 1224579999999999999999999987 567888888
Q ss_pred Cccchhhhhhhhh--------h--hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC-
Q 012000 283 SSLTSKWVGEGEK--------L--VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE- 351 (473)
Q Consensus 283 ~~l~~~~~g~~~~--------~--~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~- 351 (473)
.++...+...... . -..++.|||++..... .....+|+..++.+... +..+||+++..|..
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~dlLiiDDi~~l~~~------~~~~~~l~~~~n~l~~~--~~~iiits~~~p~~l 258 (450)
T PRK00149 187 EKFTNDFVNALRNNTMEEFKEKYRSVDVLLIDDIQFLAGK------ERTQEEFFHTFNALHEA--GKQIVLTSDRPPKEL 258 (450)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcCCEEEEehhhhhcCC------HHHHHHHHHHHHHHHHC--CCcEEEECCCCHHHH
Confidence 8776655433211 1 1357889999654321 11233455545444322 22456666666655
Q ss_pred --CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 352 --LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 352 --Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+++.+++||. ..+.+..|+.++|..|++..+...++.++++.++.||..+.| +.+.|..++......+...
T Consensus 259 ~~l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~~l~~e~l~~ia~~~~~-~~R~l~~~l~~l~~~~~~~---- 333 (450)
T PRK00149 259 PGLEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGIDLPDEVLEFIAKNITS-NVRELEGALNRLIAYASLT---- 333 (450)
T ss_pred HHHHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcCC-CHHHHHHHHHHHHHHHHhh----
Confidence 6789999996 468999999999999999999988899999999999999988 7888888888776554221
Q ss_pred ccccccccCCCCcHHHHHHHHHhh
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~ 451 (473)
.++||.+.+.++|+.+
T Consensus 334 --------~~~it~~~~~~~l~~~ 349 (450)
T PRK00149 334 --------GKPITLELAKEALKDL 349 (450)
T ss_pred --------CCCCCHHHHHHHHHHh
Confidence 2457788888887765
No 103
>PRK06620 hypothetical protein; Validated
Probab=99.65 E-value=1e-14 Score=137.86 Aligned_cols=196 Identities=15% Similarity=0.189 Sum_probs=130.3
Q ss_pred CCCCCcccccC---hHHHHHHHHHHHhchhcchhhhhcCCCC-CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 210 SPSVKWEDVAG---LEKAKQALMEMVILPAKRRDLFTGLRRP-ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 210 ~~~~~~~divG---l~~~k~~L~e~v~~p~~~~~~~~~~~~~-~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
.|..+|++++- ...+...++++...+ ...| .+.++||||||||||+|++++++..+..++. ....
T Consensus 10 ~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~---------~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~--~~~~ 78 (214)
T PRK06620 10 SSKYHPDEFIVSSSNDQAYNIIKNWQCGF---------GVNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYIIK--DIFF 78 (214)
T ss_pred CCCCCchhhEecccHHHHHHHHHHHHHcc---------ccCCCcceEEEECCCCCCHHHHHHHHHhccCCEEcc--hhhh
Confidence 35668888654 344566666554211 0122 2679999999999999999999988764432 1111
Q ss_pred chhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC--CCHHHhcccc--
Q 012000 286 TSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE--LDDAVLRRLV-- 361 (473)
Q Consensus 286 ~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~--Ld~al~rRf~-- 361 (473)
.... .....++.||+++.. ... .|...++.+.. .+..+||+++..|.. + +++++||.
T Consensus 79 ~~~~-----~~~~d~lliDdi~~~--------~~~---~lf~l~N~~~e--~g~~ilits~~~p~~l~l-~~L~SRl~~g 139 (214)
T PRK06620 79 NEEI-----LEKYNAFIIEDIENW--------QEP---ALLHIFNIINE--KQKYLLLTSSDKSRNFTL-PDLSSRIKSV 139 (214)
T ss_pred chhH-----HhcCCEEEEeccccc--------hHH---HHHHHHHHHHh--cCCEEEEEcCCCccccch-HHHHHHHhCC
Confidence 1111 112367889999621 111 23333332222 233677777766554 5 88999997
Q ss_pred cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcH
Q 012000 362 KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRY 441 (473)
Q Consensus 362 ~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~ 441 (473)
..+.+..|+.+.+..+++..+...++.++++.++.|+.++.| +.+.+..++......+.. ..++||.
T Consensus 140 l~~~l~~pd~~~~~~~l~k~~~~~~l~l~~ev~~~L~~~~~~-d~r~l~~~l~~l~~~~~~------------~~~~it~ 206 (214)
T PRK06620 140 LSILLNSPDDELIKILIFKHFSISSVTISRQIIDFLLVNLPR-EYSKIIEILENINYFALI------------SKRKITI 206 (214)
T ss_pred ceEeeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHH------------cCCCCCH
Confidence 358999999999999999999888899999999999999998 677777777764332211 1256888
Q ss_pred HHHHHHH
Q 012000 442 EDFQKAM 448 (473)
Q Consensus 442 ~df~~al 448 (473)
..+.+++
T Consensus 207 ~~~~~~l 213 (214)
T PRK06620 207 SLVKEVL 213 (214)
T ss_pred HHHHHHh
Confidence 8777765
No 104
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=3.4e-15 Score=161.22 Aligned_cols=187 Identities=23% Similarity=0.270 Sum_probs=137.0
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
+.++++|.+|+||+|++.+++.|+.++.. ...++.+|||||||+|||++|+++|+.+++.
T Consensus 6 l~~kyRP~~~~eiiGq~~~~~~L~~~i~~-----------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c 74 (585)
T PRK14950 6 LYRKWRSQTFAELVGQEHVVQTLRNAIAE-----------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPC 74 (585)
T ss_pred HHHHhCCCCHHHhcCCHHHHHHHHHHHHh-----------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCC
Confidence 34678999999999999999999888752 2335678999999999999999999987532
Q ss_pred ----------------EEEEecCccch-hhhhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcC
Q 012000 277 ----------------FFNVSASSLTS-KWVGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG 331 (473)
Q Consensus 277 ----------------~~~v~~~~l~~-~~~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg 331 (473)
++.+++..... ..+.+. ...-+.+++||+++.. .....+.|+..++.
T Consensus 75 ~~c~~c~~i~~~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L--------~~~a~naLLk~LEe 146 (585)
T PRK14950 75 GTCEMCRAIAEGSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHML--------STAAFNALLKTLEE 146 (585)
T ss_pred ccCHHHHHHhcCCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhC--------CHHHHHHHHHHHhc
Confidence 23333321110 000000 0112457789998433 23446677777763
Q ss_pred cCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 012000 332 VTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 411 (473)
Q Consensus 332 ~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~ 411 (473)
+...++||.+|+.++.+.+.+++||.. +.|+.++..+...++...+...++.++++.+..|+..+.| +.+++.+
T Consensus 147 ----pp~~tv~Il~t~~~~kll~tI~SR~~~-i~f~~l~~~el~~~L~~~a~~egl~i~~eal~~La~~s~G-dlr~al~ 220 (585)
T PRK14950 147 ----PPPHAIFILATTEVHKVPATILSRCQR-FDFHRHSVADMAAHLRKIAAAEGINLEPGALEAIARAATG-SMRDAEN 220 (585)
T ss_pred ----CCCCeEEEEEeCChhhhhHHHHhccce-eeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHH
Confidence 334567777778888888999999865 8899999999999999999888988999999999999988 7777777
Q ss_pred HHHHHH
Q 012000 412 LCEEAA 417 (473)
Q Consensus 412 l~~~A~ 417 (473)
+++..+
T Consensus 221 ~LekL~ 226 (585)
T PRK14950 221 LLQQLA 226 (585)
T ss_pred HHHHHH
Confidence 777643
No 105
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.65 E-value=5.5e-15 Score=159.48 Aligned_cols=186 Identities=18% Similarity=0.262 Sum_probs=136.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--------- 276 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--------- 276 (473)
..+++++.+|++++|++.+++.|..++.. ....+++|||||||+|||++|+++|+.+.+.
T Consensus 6 l~~kyRP~~f~~liGq~~i~~~L~~~l~~-----------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~ 74 (620)
T PRK14948 6 LHHKYRPQRFDELVGQEAIATTLKNALIS-----------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEP 74 (620)
T ss_pred HHHHhCCCcHhhccChHHHHHHHHHHHHc-----------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCC
Confidence 34678899999999999999999998852 2234689999999999999999999998652
Q ss_pred -----------------EEEEecCc-cc----hhhhhhhh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 277 -----------------FFNVSASS-LT----SKWVGEGE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 277 -----------------~~~v~~~~-l~----~~~~g~~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
++.++... .. ...+.... ..-..|+.||+++.. .....+.||..|+
T Consensus 75 Cg~C~~C~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L--------t~~a~naLLK~LE 146 (620)
T PRK14948 75 CGKCELCRAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML--------STAAFNALLKTLE 146 (620)
T ss_pred CcccHHHHHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc--------CHHHHHHHHHHHh
Confidence 33333321 00 00000000 011357789998443 3345678888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
.+...+++|++|+.+..+.+.|++||.. +.|+.++.++....+...+.+.++.+++..+..|+..+.| +.+++.
T Consensus 147 ----ePp~~tvfIL~t~~~~~llpTIrSRc~~-~~f~~l~~~ei~~~L~~ia~kegi~is~~al~~La~~s~G-~lr~A~ 220 (620)
T PRK14948 147 ----EPPPRVVFVLATTDPQRVLPTIISRCQR-FDFRRIPLEAMVQHLSEIAEKESIEIEPEALTLVAQRSQG-GLRDAE 220 (620)
T ss_pred ----cCCcCeEEEEEeCChhhhhHHHHhheeE-EEecCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 4455678888888899999999999965 7888888888888888888888888889999999999998 456666
Q ss_pred HHHHHH
Q 012000 411 ALCEEA 416 (473)
Q Consensus 411 ~l~~~A 416 (473)
++++..
T Consensus 221 ~lLekl 226 (620)
T PRK14948 221 SLLDQL 226 (620)
T ss_pred HHHHHH
Confidence 666643
No 106
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.64 E-value=8e-15 Score=139.75 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=137.1
Q ss_pred CCCccccc--ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 212 SVKWEDVA--GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 212 ~~~~~div--Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
+.+|++++ +...+.+.|++++. ...+.+++|+||||||||++|+++++++ +.+++.+++.++.
T Consensus 11 ~~~~~~~~~~~~~~~~~~l~~~~~------------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~ 78 (226)
T TIGR03420 11 DPTFDNFYAGGNAELLAALRQLAA------------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELA 78 (226)
T ss_pred chhhcCcCcCCcHHHHHHHHHHHh------------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHH
Confidence 46788886 36678888887753 1235689999999999999999999876 4678888887765
Q ss_pred hhhhhhhhh-hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCC---HHHhcccc-
Q 012000 287 SKWVGEGEK-LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD---DAVLRRLV- 361 (473)
Q Consensus 287 ~~~~g~~~~-~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld---~al~rRf~- 361 (473)
......... .-..++.||+++...... . ....+...++..... + ..+|++++..+..++ +.+.+||.
T Consensus 79 ~~~~~~~~~~~~~~lLvIDdi~~l~~~~--~----~~~~L~~~l~~~~~~-~-~~iIits~~~~~~~~~~~~~L~~r~~~ 150 (226)
T TIGR03420 79 QADPEVLEGLEQADLVCLDDVEAIAGQP--E----WQEALFHLYNRVREA-G-GRLLIAGRAAPAQLPLRLPDLRTRLAW 150 (226)
T ss_pred HhHHHHHhhcccCCEEEEeChhhhcCCh--H----HHHHHHHHHHHHHHc-C-CeEEEECCCChHHCCcccHHHHHHHhc
Confidence 432111111 112478899996543211 0 122233333322111 1 234444444444432 78888874
Q ss_pred -cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCc
Q 012000 362 -KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLR 440 (473)
Q Consensus 362 -~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it 440 (473)
..+.+|.|+.+++..+++.++...++.+++..+..|+..+.| +.+++.++++.+...+... ...|+
T Consensus 151 ~~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~l~~L~~~~~g-n~r~L~~~l~~~~~~~~~~------------~~~i~ 217 (226)
T TIGR03420 151 GLVFQLPPLSDEEKIAALQSRAARRGLQLPDEVADYLLRHGSR-DMGSLMALLDALDRASLAA------------KRKIT 217 (226)
T ss_pred CeeEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHHh------------CCCCC
Confidence 678999999999999999988888888899999999997666 8999999999876544332 13577
Q ss_pred HHHHHHHH
Q 012000 441 YEDFQKAM 448 (473)
Q Consensus 441 ~~df~~al 448 (473)
.+...+.|
T Consensus 218 ~~~~~~~~ 225 (226)
T TIGR03420 218 IPFVKEVL 225 (226)
T ss_pred HHHHHHHh
Confidence 77666654
No 107
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.63 E-value=8.6e-15 Score=158.00 Aligned_cols=186 Identities=19% Similarity=0.249 Sum_probs=140.1
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-----------
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA----------- 275 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~----------- 275 (473)
.++|+|.+|+||+|++.+++.|..++. .+..++.+|||||+|+|||++|+++|+.+.+
T Consensus 8 ~~kyRP~~f~~viGq~~~~~~L~~~i~-----------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg 76 (614)
T PRK14971 8 ARKYRPSTFESVVGQEALTTTLKNAIA-----------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACN 76 (614)
T ss_pred HHHHCCCCHHHhcCcHHHHHHHHHHHH-----------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 367899999999999999999999885 2334567999999999999999999998752
Q ss_pred --------------cEEEEecCccchhhhhhhhhh-----------hcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 276 --------------TFFNVSASSLTSKWVGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 276 --------------~~~~v~~~~l~~~~~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
.++.+++.+-.+ +...... -+.++.||+.+.. .....+.|+..|+
T Consensus 77 ~C~sC~~~~~~~~~n~~~ld~~~~~~--vd~Ir~li~~~~~~P~~~~~KVvIIdea~~L--------s~~a~naLLK~LE 146 (614)
T PRK14971 77 ECESCVAFNEQRSYNIHELDAASNNS--VDDIRNLIEQVRIPPQIGKYKIYIIDEVHML--------SQAAFNAFLKTLE 146 (614)
T ss_pred cchHHHHHhcCCCCceEEecccccCC--HHHHHHHHHHHhhCcccCCcEEEEEECcccC--------CHHHHHHHHHHHh
Confidence 334444432110 1111111 1357779987443 3345677888887
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
.++..+++|++|+.+..|-+.|++||.. +.|..++.++....+...+...++.+++..+..|+..+.| +.+++.
T Consensus 147 ----epp~~tifIL~tt~~~kIl~tI~SRc~i-v~f~~ls~~ei~~~L~~ia~~egi~i~~~al~~La~~s~g-dlr~al 220 (614)
T PRK14971 147 ----EPPSYAIFILATTEKHKILPTILSRCQI-FDFNRIQVADIVNHLQYVASKEGITAEPEALNVIAQKADG-GMRDAL 220 (614)
T ss_pred ----CCCCCeEEEEEeCCchhchHHHHhhhhe-eecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHH
Confidence 3445577777887888999999999965 8999999999999999999999999999999999999987 667777
Q ss_pred HHHHHHHHH
Q 012000 411 ALCEEAAMM 419 (473)
Q Consensus 411 ~l~~~A~~~ 419 (473)
++++..+..
T Consensus 221 ~~Lekl~~y 229 (614)
T PRK14971 221 SIFDQVVSF 229 (614)
T ss_pred HHHHHHHHh
Confidence 776665433
No 108
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.63 E-value=1.8e-14 Score=150.15 Aligned_cols=236 Identities=19% Similarity=0.275 Sum_probs=151.6
Q ss_pred CCCCCccccc-ChHH--HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 210 SPSVKWEDVA-GLEK--AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 210 ~~~~~~~div-Gl~~--~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.|..+|++++ |... +...++++...+.. ....+.++++||||||+|||+|++++++++ +..++.+++.
T Consensus 105 ~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~------~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~ 178 (445)
T PRK12422 105 DPLMTFANFLVTPENDLPHRILQEFTKVSEQ------GKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSE 178 (445)
T ss_pred CccccccceeeCCcHHHHHHHHHHHHhcccc------ccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHH
Confidence 3567899876 5332 33445444322210 011234679999999999999999999976 6788888877
Q ss_pred ccchhhhhhhh-----h-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC---
Q 012000 284 SLTSKWVGEGE-----K-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ--- 350 (473)
Q Consensus 284 ~l~~~~~g~~~-----~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~--- 350 (473)
++...+..... . .-..++.|||++...... ....+|+..++.+... +..+|++++..|.
T Consensus 179 ~f~~~~~~~l~~~~~~~f~~~~~~~dvLiIDDiq~l~~k~------~~qeelf~l~N~l~~~--~k~IIlts~~~p~~l~ 250 (445)
T PRK12422 179 LFTEHLVSAIRSGEMQRFRQFYRNVDALFIEDIEVFSGKG------ATQEEFFHTFNSLHTE--GKLIVISSTCAPQDLK 250 (445)
T ss_pred HHHHHHHHHHhcchHHHHHHHcccCCEEEEcchhhhcCCh------hhHHHHHHHHHHHHHC--CCcEEEecCCCHHHHh
Confidence 66544332211 1 113578899996543211 1122333333322211 2245555555554
Q ss_pred CCCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH-HhHHHhccc
Q 012000 351 ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM-MPIRELGTN 427 (473)
Q Consensus 351 ~Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~-~a~~~~~~~ 427 (473)
.+++.+++||. ..+.++.|+.++|..+++..+...++.++++.++.|+....+ +.+.|...+...+. .+..++.
T Consensus 251 ~l~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~~l~~evl~~la~~~~~-dir~L~g~l~~l~~~~a~~~~~-- 327 (445)
T PRK12422 251 AMEERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSIRIEETALDFLIEALSS-NVKSLLHALTLLAKRVAYKKLS-- 327 (445)
T ss_pred hhHHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHHHhh--
Confidence 46789999996 678999999999999999999999999999999999998887 56666666665542 2333322
Q ss_pred ccccccccCCCCcHHHHHHHHHhhC---C--CCCHHHHHHHHHHHHhhCC
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIR---P--SLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~---p--s~~~~~~~~~~~w~~~~g~ 472 (473)
..+||.++++++|+.+- + .++.+.+ .+.+.+.||-
T Consensus 328 --------~~~i~~~~~~~~l~~~~~~~~~~~~t~~~I--~~~Va~~~~v 367 (445)
T PRK12422 328 --------HQLLYVDDIKALLHDVLEAAESVRLTPSKI--IRAVAQYYGV 367 (445)
T ss_pred --------CCCCCHHHHHHHHHHhhhcccCCCCCHHHH--HHHHHHHhCC
Confidence 25699999999998752 2 2455443 3456777763
No 109
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.62 E-value=5.2e-15 Score=165.22 Aligned_cols=197 Identities=18% Similarity=0.207 Sum_probs=138.1
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------- 273 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------- 273 (473)
..+.+..++-++++++|.++..+.+.+.+. .....+++|+||||||||++|+.+|..+
T Consensus 175 ~~L~~~~r~~~ld~~iGr~~ei~~~i~~l~------------r~~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~ 242 (852)
T TIGR03345 175 TDLTAQAREGKIDPVLGRDDEIRQMIDILL------------RRRQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALR 242 (852)
T ss_pred hhHHHHhcCCCCCcccCCHHHHHHHHHHHh------------cCCcCceeEECCCCCCHHHHHHHHHHHHhhCCCCcccc
Confidence 445556678899999999998777766553 1223579999999999999999999976
Q ss_pred CCcEEEEecCccch--hhhhhhhhh------------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 274 QATFFNVSASSLTS--KWVGEGEKL------------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 274 ~~~~~~v~~~~l~~--~~~g~~~~~------------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
+.+++.++...+.. .+.|+.+.. .+.|++|||++.....+.........+.|+..+. .+.
T Consensus 243 ~~~i~~l~l~~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~------~G~ 316 (852)
T TIGR03345 243 NVRLLSLDLGLLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALA------RGE 316 (852)
T ss_pred CCeEEEeehhhhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhh------CCC
Confidence 35577777665542 344444332 2458889999887643321111112223333332 345
Q ss_pred EEEEeecCCC-----CCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC-----
Q 012000 340 VIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS----- 405 (473)
Q Consensus 340 v~vI~tTn~~-----~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g~s----- 405 (473)
+.+||||+.. ..+|++|.|||. .|.++.|+.+++..||+.+... +++.++++.+..++..+.+|-
T Consensus 317 l~~IgaTT~~e~~~~~~~d~AL~rRf~-~i~v~eps~~~~~~iL~~~~~~~e~~~~v~i~d~al~~~~~ls~ryi~~r~L 395 (852)
T TIGR03345 317 LRTIAATTWAEYKKYFEKDPALTRRFQ-VVKVEEPDEETAIRMLRGLAPVLEKHHGVLILDEAVVAAVELSHRYIPGRQL 395 (852)
T ss_pred eEEEEecCHHHHhhhhhccHHHHHhCe-EEEeCCCCHHHHHHHHHHHHHhhhhcCCCeeCHHHHHHHHHHcccccccccC
Confidence 8899999864 358999999996 5999999999999997655432 567789999999999998876
Q ss_pred HHHHHHHHHHHHHH
Q 012000 406 GSDLQALCEEAAMM 419 (473)
Q Consensus 406 ~~dL~~l~~~A~~~ 419 (473)
+.-.-.|+.+|+..
T Consensus 396 PDKAIdlldea~a~ 409 (852)
T TIGR03345 396 PDKAVSLLDTACAR 409 (852)
T ss_pred ccHHHHHHHHHHHH
Confidence 34445566766544
No 110
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.62 E-value=1e-14 Score=149.51 Aligned_cols=178 Identities=19% Similarity=0.245 Sum_probs=121.1
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-----------------
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT----------------- 276 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~----------------- 276 (473)
.|++|+|++.+++.|++++..+......+. ...++++||+||||+|||++|+++|+.+.+.
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~--~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~ 80 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAG--SGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVL 80 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccC--CCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHh
Confidence 599999999999999999975443211111 2246789999999999999999999976543
Q ss_pred ------EEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 277 ------FFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 277 ------~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
+..+.+... ...+++.+. .-..|++||+++... ....+.||+.|+. ++.+
T Consensus 81 ~~~hpD~~~i~~~~~-~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~--------~~aanaLLk~LEe----p~~~ 147 (394)
T PRK07940 81 AGTHPDVRVVAPEGL-SIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT--------ERAANALLKAVEE----PPPR 147 (394)
T ss_pred cCCCCCEEEeccccc-cCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC--------HHHHHHHHHHhhc----CCCC
Confidence 122222110 001111111 113478899995543 3345778888863 3344
Q ss_pred EEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 340 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 340 v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
+++|.+|+.++.+.+.+++||. .++|+.|+.++....+... .+ ++++.+..++..+.|..+..+.-+
T Consensus 148 ~~fIL~a~~~~~llpTIrSRc~-~i~f~~~~~~~i~~~L~~~---~~--~~~~~a~~la~~s~G~~~~A~~l~ 214 (394)
T PRK07940 148 TVWLLCAPSPEDVLPTIRSRCR-HVALRTPSVEAVAEVLVRR---DG--VDPETARRAARASQGHIGRARRLA 214 (394)
T ss_pred CeEEEEECChHHChHHHHhhCe-EEECCCCCHHHHHHHHHHh---cC--CCHHHHHHHHHHcCCCHHHHHHHh
Confidence 5566566668999999999995 5899999999887776632 23 457788899999999877665544
No 111
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.61 E-value=4e-14 Score=150.17 Aligned_cols=180 Identities=18% Similarity=0.279 Sum_probs=126.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEecCccchhhhhhhhhh----------hcceeeeeccccccccCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEKL----------VRTLFMIDSIMSTRMANE 314 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~~~l~~~~~g~~~~~----------~~~if~IDei~~~~~~~~ 314 (473)
+.++|||++|||||+|+++||+++ +..++.+++.++...+....... -..++.||+|+......
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~el~~al~~~~~~~f~~~y~~~DLLlIDDIq~l~gke- 393 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTNEFINSIRDGKGDSFRRRYREMDILLVDDIQFLEDKE- 393 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHHHHHHHHHhccHHHHHHHhhcCCEEEEehhccccCCH-
Confidence 459999999999999999999986 56788898888776654332111 13578899997554221
Q ss_pred chHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC-CC---CCCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCC
Q 012000 315 NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK-PQ---ELDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFS 388 (473)
Q Consensus 315 ~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~-~~---~Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~ 388 (473)
....+|+..++.+... +. -+|| |+|. |. .+++.|++||. ..+.+..|+.+.|..||+..+...++.
T Consensus 394 -----~tqeeLF~l~N~l~e~-gk-~III-TSd~~P~eL~~l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l~ 465 (617)
T PRK14086 394 -----STQEEFFHTFNTLHNA-NK-QIVL-SSDRPPKQLVTLEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQLN 465 (617)
T ss_pred -----HHHHHHHHHHHHHHhc-CC-CEEE-ecCCChHhhhhccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCCC
Confidence 1123344444433322 22 2444 4544 33 46889999996 556999999999999999999999999
Q ss_pred CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 389 LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 389 l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
++++.++.|+.+..+ +.+.|..++......+... .++||.+....+|+.+
T Consensus 466 l~~eVi~yLa~r~~r-nvR~LegaL~rL~a~a~~~------------~~~itl~la~~vL~~~ 515 (617)
T PRK14086 466 APPEVLEFIASRISR-NIRELEGALIRVTAFASLN------------RQPVDLGLTEIVLRDL 515 (617)
T ss_pred CCHHHHHHHHHhccC-CHHHHHHHHHHHHHHHHhh------------CCCCCHHHHHHHHHHh
Confidence 999999999999887 6788888877765444221 1346666666666554
No 112
>PRK08727 hypothetical protein; Validated
Probab=99.61 E-value=4.6e-14 Score=135.38 Aligned_cols=207 Identities=18% Similarity=0.243 Sum_probs=131.3
Q ss_pred CCCCcccccChH-HHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 211 PSVKWEDVAGLE-KAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 211 ~~~~~~divGl~-~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
+..+|+++++.. .....+..... ......++||||+|||||+|+++++.++ +...+.++..++.
T Consensus 14 ~~~~f~~f~~~~~n~~~~~~~~~~------------~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~ 81 (233)
T PRK08727 14 SDQRFDSYIAAPDGLLAQLQALAA------------GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA 81 (233)
T ss_pred CcCChhhccCCcHHHHHHHHHHHh------------ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh
Confidence 456888876544 43333332221 1112459999999999999999997764 5566666665544
Q ss_pred hhhhhhhhhhh-cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCC---CHHHhccc--
Q 012000 287 SKWVGEGEKLV-RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL---DDAVLRRL-- 360 (473)
Q Consensus 287 ~~~~g~~~~~~-~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~L---d~al~rRf-- 360 (473)
..+........ ..++.|||++....... . ...++..++..... + .-+|+.+...|..+ ++.+++||
T Consensus 82 ~~~~~~~~~l~~~dlLiIDDi~~l~~~~~--~----~~~lf~l~n~~~~~-~-~~vI~ts~~~p~~l~~~~~dL~SRl~~ 153 (233)
T PRK08727 82 GRLRDALEALEGRSLVALDGLESIAGQRE--D----EVALFDFHNRARAA-G-ITLLYTARQMPDGLALVLPDLRSRLAQ 153 (233)
T ss_pred hhHHHHHHHHhcCCEEEEeCcccccCChH--H----HHHHHHHHHHHHHc-C-CeEEEECCCChhhhhhhhHHHHHHHhc
Confidence 33322222221 25788999965443221 1 12223333322211 1 12444444566655 79999997
Q ss_pred ccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCc
Q 012000 361 VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLR 440 (473)
Q Consensus 361 ~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it 440 (473)
...+.++.|+.+++..+++..+...++.++++.+..|++.+.| +.+.+.++++.....+... .++||
T Consensus 154 ~~~~~l~~~~~e~~~~iL~~~a~~~~l~l~~e~~~~La~~~~r-d~r~~l~~L~~l~~~~~~~------------~~~it 220 (233)
T PRK08727 154 CIRIGLPVLDDVARAAVLRERAQRRGLALDEAAIDWLLTHGER-ELAGLVALLDRLDRESLAA------------KRRVT 220 (233)
T ss_pred CceEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHh------------CCCCC
Confidence 4568999999999999999988888899999999999999997 4555555566544333221 24688
Q ss_pred HHHHHHHHHh
Q 012000 441 YEDFQKAMAV 450 (473)
Q Consensus 441 ~~df~~al~~ 450 (473)
...+.+.+..
T Consensus 221 ~~~~~~~l~~ 230 (233)
T PRK08727 221 VPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHhh
Confidence 8888887754
No 113
>PRK05642 DNA replication initiation factor; Validated
Probab=99.60 E-value=4.9e-14 Score=135.24 Aligned_cols=179 Identities=14% Similarity=0.133 Sum_probs=124.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhhhhhhh--cceeeeeccccccccCcchHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKLV--RTLFMIDSIMSTRMANENDASRRLKS 323 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~~~~~~--~~if~IDei~~~~~~~~~~~~~~~~~ 323 (473)
...++||||+|||||+|++++++++ +..++.++..++...... ....+ -.++.||+++...... ....
T Consensus 45 ~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~~~-~~~~~~~~d~LiiDDi~~~~~~~------~~~~ 117 (234)
T PRK05642 45 ESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRGPE-LLDNLEQYELVCLDDLDVIAGKA------DWEE 117 (234)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhhHH-HHHhhhhCCEEEEechhhhcCCh------HHHH
Confidence 4679999999999999999999764 567788887776543211 11111 2577899996443211 1223
Q ss_pred HHHHHhcCcCCCCCCcEEEEeecCCCCCC---CHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHH
Q 012000 324 EFLIQFDGVTSNPNDLVIVMGATNKPQEL---DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLV 398 (473)
Q Consensus 324 ~ll~~ldg~~~~~~~~v~vI~tTn~~~~L---d~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La 398 (473)
+|+..++.... .+..+||+++..|..+ .+.+++||. ..+.+..|+.+++..+++..+...++.++++.++.|+
T Consensus 118 ~Lf~l~n~~~~--~g~~ilits~~~p~~l~~~~~~L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~~l~~ev~~~L~ 195 (234)
T PRK05642 118 ALFHLFNRLRD--SGRRLLLAASKSPRELPIKLPDLKSRLTLALVFQMRGLSDEDKLRALQLRASRRGLHLTDEVGHFIL 195 (234)
T ss_pred HHHHHHHHHHh--cCCEEEEeCCCCHHHcCccCccHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 34444444332 2345677777666543 689999995 5577899999999999997777778899999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHH
Q 012000 399 RETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 399 ~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~ 449 (473)
++.+| +.+.+..+++.....++.. .++||..-+.++|.
T Consensus 196 ~~~~~-d~r~l~~~l~~l~~~~l~~------------~~~it~~~~~~~L~ 233 (234)
T PRK05642 196 TRGTR-SMSALFDLLERLDQASLQA------------QRKLTIPFLKETLG 233 (234)
T ss_pred HhcCC-CHHHHHHHHHHHHHHHHHc------------CCcCCHHHHHHHhc
Confidence 99998 7888888877665443321 25688877777663
No 114
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.59 E-value=3.2e-14 Score=148.47 Aligned_cols=210 Identities=17% Similarity=0.235 Sum_probs=139.1
Q ss_pred CCCCCccccc-ChHH--HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEe
Q 012000 210 SPSVKWEDVA-GLEK--AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVS 281 (473)
Q Consensus 210 ~~~~~~~div-Gl~~--~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~ 281 (473)
.|..+|++++ |... +...+.+.... ... ..+++||||||||||+|++++|+++ +..++.++
T Consensus 99 ~~~~tFdnFv~g~~n~~a~~~~~~~~~~----------~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 99 NPDYTFENFVVGPGNSFAYHAALEVAKN----------PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CCCCcccccccCCchHHHHHHHHHHHhC----------cCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 3567899977 5332 33333333321 111 3569999999999999999999986 46788888
Q ss_pred cCccchhhhhhh--------hhh---hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 282 ASSLTSKWVGEG--------EKL---VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 282 ~~~l~~~~~g~~--------~~~---~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
+.++...+.... ... -..++.|||++..... .....+|+..++.+... +..+||++...|.
T Consensus 168 ~~~f~~~~~~~~~~~~~~~f~~~~~~~~dvLlIDDi~~l~~~------~~~q~elf~~~n~l~~~--~k~iIitsd~~p~ 239 (440)
T PRK14088 168 SEKFLNDLVDSMKEGKLNEFREKYRKKVDVLLIDDVQFLIGK------TGVQTELFHTFNELHDS--GKQIVICSDREPQ 239 (440)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHhcCCEEEEechhhhcCc------HHHHHHHHHHHHHHHHc--CCeEEEECCCCHH
Confidence 887765543221 111 2468889999654221 11223344444433322 2245665556666
Q ss_pred CC---CHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 351 EL---DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 351 ~L---d~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
.+ .+.+++||. ..+.+.+|+.+.|..|++..+...++.++++.++.||....| +.+.|..++......+...
T Consensus 240 ~l~~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~~l~~ev~~~Ia~~~~~-~~R~L~g~l~~l~~~~~~~-- 316 (440)
T PRK14088 240 KLSEFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT-- 316 (440)
T ss_pred HHHHHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccc-CHHHHHHHHHHHHHHHHHh--
Confidence 54 577888986 457899999999999999999988899999999999999988 7888888877765444221
Q ss_pred ccccccccccCCCCcHHHHHHHHHhh
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
.++||.+...++|+.+
T Consensus 317 ----------~~~it~~~a~~~L~~~ 332 (440)
T PRK14088 317 ----------GEEVDLKEAILLLKDF 332 (440)
T ss_pred ----------CCCCCHHHHHHHHHHH
Confidence 1446666666666554
No 115
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.58 E-value=6.2e-14 Score=151.80 Aligned_cols=225 Identities=19% Similarity=0.297 Sum_probs=148.2
Q ss_pred hhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc--------
Q 012000 202 INTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------- 273 (473)
Q Consensus 202 ~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------- 273 (473)
+...+.+..++.+|++++|++.+.+.+...+.. ..+.+++|+||||||||++|+++++..
T Consensus 140 ~~~~~~~~~rp~~~~~iiGqs~~~~~l~~~ia~------------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~ 207 (615)
T TIGR02903 140 LHKSAQSLLRPRAFSEIVGQERAIKALLAKVAS------------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPF 207 (615)
T ss_pred hhhHHhhhcCcCcHHhceeCcHHHHHHHHHHhc------------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcc
Confidence 334566677899999999999999988766532 123579999999999999999998755
Q ss_pred --CCcEEEEecCccc-------hhhhhhh-------------------------hhhhcceeeeeccccccccCcchHHH
Q 012000 274 --QATFFNVSASSLT-------SKWVGEG-------------------------EKLVRTLFMIDSIMSTRMANENDASR 319 (473)
Q Consensus 274 --~~~~~~v~~~~l~-------~~~~g~~-------------------------~~~~~~if~IDei~~~~~~~~~~~~~ 319 (473)
+.+|+.+++..+. ..+++.. ...-..+++|||++... .
T Consensus 208 ~~~~~fv~i~~~~l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld--------~ 279 (615)
T TIGR02903 208 AEDAPFVEVDGTTLRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELD--------P 279 (615)
T ss_pred cCCCCeEEEechhccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCC--------H
Confidence 3578888876541 0111100 01123578899984332 2
Q ss_pred HHHHHHHHHhcCc------------------------CCCCCCcEEEEe-ecCCCCCCCHHHhcccccccccCCCcHHHH
Q 012000 320 RLKSEFLIQFDGV------------------------TSNPNDLVIVMG-ATNKPQELDDAVLRRLVKRIYVPLPDENVR 374 (473)
Q Consensus 320 ~~~~~ll~~ldg~------------------------~~~~~~~v~vI~-tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r 374 (473)
.....++..++.- ....+..+++|+ ||+.+..+++++++||.. +++++++.+++
T Consensus 280 ~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~~~-i~~~pls~edi 358 (615)
T TIGR02903 280 LLQNKLLKVLEDKRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRCAE-VFFEPLTPEDI 358 (615)
T ss_pred HHHHHHHHHHhhCeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhceeE-EEeCCCCHHHH
Confidence 3334444444221 001122355555 556788999999999975 68888999999
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 375 RLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 375 ~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
..|++.++...++.++++.+..|+..+. .++...+++..+...+..+... .........|+.+|+.+++..-+
T Consensus 359 ~~Il~~~a~~~~v~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~---~~~~~~~~~I~~edv~~~l~~~r 431 (615)
T TIGR02903 359 ALIVLNAAEKINVHLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAE---AGKENDKVTITQDDVYEVIQISR 431 (615)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHH---hccCCCCeeECHHHHHHHhCCCc
Confidence 9999999988777788888888888765 3454445555554444333110 00111235799999999998644
No 116
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.58 E-value=2.1e-14 Score=152.80 Aligned_cols=211 Identities=38% Similarity=0.606 Sum_probs=172.3
Q ss_pred chhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhc-----------cee
Q 012000 234 LPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVR-----------TLF 301 (473)
Q Consensus 234 ~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~-----------~if 301 (473)
+|+..+..+... ..++++++++||||||||++++++|.+ +..++.+++....++|.+..+...+ .++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ii 80 (494)
T COG0464 2 LPLKEPELFKKLGIEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLAPSII 80 (494)
T ss_pred CCccCHHHHHHhCCCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhCCCeE
Confidence 355566666655 577899999999999999999999999 7777888899999999888765553 455
Q ss_pred eeeccccc---cccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHH
Q 012000 302 MIDSIMST---RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRL 376 (473)
Q Consensus 302 ~IDei~~~---~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~ 376 (473)
++|+++.. +.........++..+++..++++. ... +++++.||.+..+++++++ ||+..+.+..|+...+.+
T Consensus 81 ~~d~~~~~~~~~~~~~~~~~~~v~~~l~~~~d~~~--~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~e 157 (494)
T COG0464 81 FIDEIDALAPKRSSDQGEVERRVVAQLLALMDGLK--RGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLE 157 (494)
T ss_pred eechhhhcccCccccccchhhHHHHHHHHhccccc--CCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHH
Confidence 66766553 333455677889999999999998 455 9999999999999999998 999999999999999999
Q ss_pred HHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCC
Q 012000 377 LLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 377 il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps 454 (473)
++..+....... .+.++..++..+.||+++++..+|..+...++++.. ........++.+||.++++.+.|+
T Consensus 158 i~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~-----~~~~~~~~~~~~~~~~~l~~~~~~ 229 (494)
T COG0464 158 ILQIHTRLMFLG-PPGTGKTLAARTVGKSGADLGALAKEAALRELRRAI-----DLVGEYIGVTEDDFEEALKKVLPS 229 (494)
T ss_pred HHHHHHhcCCCc-ccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhh-----ccCcccccccHHHHHHHHHhcCcc
Confidence 998887765544 377899999999999999999999999999888742 111233568899999999998875
No 117
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=99.57 E-value=1.1e-14 Score=113.65 Aligned_cols=79 Identities=41% Similarity=0.647 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 012000 50 LKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDRLQAL 128 (473)
Q Consensus 50 ~k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~rl~~l 128 (473)
+|.||++|+++|.+||+.||+|..++|+.+|++|+++|.+++.++.+...+...|++++.|++||.+++.++++|+..|
T Consensus 1 ik~~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg~ai~~~~~~~~~~w~~ar~~~~Km~~~~~~v~~RL~~L 79 (79)
T cd02679 1 IRGYYKQAFEEISKALRADEWGDKEQALAHYRKGLRELEEGIAVPVPSAGVGSQWERARRLQQKMKTNLNMVKTRLQVL 79 (79)
T ss_pred CchHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHHcCCCCCcccccHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 5789999999999999999999999999999999999999999998778999999999999999999999999998764
No 118
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.57 E-value=4.2e-14 Score=145.66 Aligned_cols=208 Identities=25% Similarity=0.306 Sum_probs=144.5
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhh----cCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhh
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFT----GLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~----~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~ 292 (473)
|+|++++++.|..++..+..+-.... ....+..++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 73 ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyvG~ 152 (412)
T PRK05342 73 VIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYVGE 152 (412)
T ss_pred eeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcccc
Confidence 89999999999887754433221110 11234578999999999999999999999999999999887653 45543
Q ss_pred hh----------------hhhcceeeeeccccccccCcc------hHHHHHHHHHHHHhcCcCC---------CCCCcEE
Q 012000 293 GE----------------KLVRTLFMIDSIMSTRMANEN------DASRRLKSEFLIQFDGVTS---------NPNDLVI 341 (473)
Q Consensus 293 ~~----------------~~~~~if~IDei~~~~~~~~~------~~~~~~~~~ll~~ldg~~~---------~~~~~v~ 341 (473)
.. ..-+.+++|||++.......+ -....+.+.||..|+|-.. .+....+
T Consensus 153 d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~~~ 232 (412)
T PRK05342 153 DVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQEFI 232 (412)
T ss_pred hHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCCeE
Confidence 21 123468889999876543211 1223577889999986421 1112345
Q ss_pred EEeecCCCC----------------------------------------------------CCCHHHhcccccccccCCC
Q 012000 342 VMGATNKPQ----------------------------------------------------ELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 342 vI~tTn~~~----------------------------------------------------~Ld~al~rRf~~~i~~~~P 369 (473)
+|.|+|... -+.|+++.|++.++.|...
T Consensus 233 ~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~~L 312 (412)
T PRK05342 233 QVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLEEL 312 (412)
T ss_pred EeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecCCC
Confidence 555554410 1467888899999999999
Q ss_pred cHHHHHHHHHH----H-------hccCC--CCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 370 DENVRRLLLKH----K-------LKGQA--FSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 370 ~~~~r~~il~~----~-------l~~~~--~~l~~~~l~~La~~--t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+.+....|+.. . +...+ +.+++..+..|++. ..++-.+.|+.+++......+.++-
T Consensus 313 ~~~~L~~Il~~~~~~l~~q~~~~l~~~~i~L~~t~~al~~Ia~~~~~~~~GAR~Lrriie~~l~~~~~~~p 383 (412)
T PRK05342 313 DEEALVRILTEPKNALVKQYQKLFEMDGVELEFTDEALEAIAKKAIERKTGARGLRSILEEILLDVMFELP 383 (412)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhCCcEEEECHHHHHHHHHhCCCCCCCCchHHHHHHHHhHHHHHhcc
Confidence 99999988872 2 22333 44688999999986 4467789999999998888877653
No 119
>PRK09087 hypothetical protein; Validated
Probab=99.57 E-value=4.9e-14 Score=134.37 Aligned_cols=199 Identities=15% Similarity=0.171 Sum_probs=133.5
Q ss_pred CCCCcccccC---hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 211 PSVKWEDVAG---LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 211 ~~~~~~divG---l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
+..+|++++. ...+...+.++. . ++.+.++||||+|||||+|+++++...+..++.. ..+..
T Consensus 16 ~~~~~~~Fi~~~~N~~a~~~l~~~~-----------~--~~~~~l~l~G~~GsGKThLl~~~~~~~~~~~i~~--~~~~~ 80 (226)
T PRK09087 16 PAYGRDDLLVTESNRAAVSLVDHWP-----------N--WPSPVVVLAGPVGSGKTHLASIWREKSDALLIHP--NEIGS 80 (226)
T ss_pred CCCChhceeecCchHHHHHHHHhcc-----------c--CCCCeEEEECCCCCCHHHHHHHHHHhcCCEEecH--HHcch
Confidence 4568999874 334444333221 1 1234599999999999999999999877665543 33333
Q ss_pred hhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCC---CHHHhcccc--c
Q 012000 288 KWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL---DDAVLRRLV--K 362 (473)
Q Consensus 288 ~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~L---d~al~rRf~--~ 362 (473)
..+... ...++.||+++.... . ..+|+..++.+... +..+||+++..|..+ .+.+++||. .
T Consensus 81 ~~~~~~---~~~~l~iDDi~~~~~--~-------~~~lf~l~n~~~~~--g~~ilits~~~p~~~~~~~~dL~SRl~~gl 146 (226)
T PRK09087 81 DAANAA---AEGPVLIEDIDAGGF--D-------ETGLFHLINSVRQA--GTSLLMTSRLWPSSWNVKLPDLKSRLKAAT 146 (226)
T ss_pred HHHHhh---hcCeEEEECCCCCCC--C-------HHHHHHHHHHHHhC--CCeEEEECCCChHHhccccccHHHHHhCCc
Confidence 333222 225788999965421 1 12244444333322 235666666555533 688999996 6
Q ss_pred ccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHH
Q 012000 363 RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYE 442 (473)
Q Consensus 363 ~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~ 442 (473)
.+.+..|+.+.|..+++..+...++.++++.++.|+++..| +.+.+..++......+... .++||..
T Consensus 147 ~~~l~~pd~e~~~~iL~~~~~~~~~~l~~ev~~~La~~~~r-~~~~l~~~l~~L~~~~~~~------------~~~it~~ 213 (226)
T PRK09087 147 VVEIGEPDDALLSQVIFKLFADRQLYVDPHVVYYLVSRMER-SLFAAQTIVDRLDRLALER------------KSRITRA 213 (226)
T ss_pred eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHHHh------------CCCCCHH
Confidence 68999999999999999999999999999999999999997 5566665555554443322 2669999
Q ss_pred HHHHHHHhh
Q 012000 443 DFQKAMAVI 451 (473)
Q Consensus 443 df~~al~~~ 451 (473)
.+.++|+.+
T Consensus 214 ~~~~~l~~~ 222 (226)
T PRK09087 214 LAAEVLNEM 222 (226)
T ss_pred HHHHHHHhh
Confidence 999988765
No 120
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.56 E-value=4.7e-14 Score=154.96 Aligned_cols=222 Identities=18% Similarity=0.219 Sum_probs=150.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------C
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~ 274 (473)
.+.+.-..-.++.++|.+...+.+.+.+.. ....++||+||||||||++|+++|... +
T Consensus 175 ~l~~~a~~g~~~~liGR~~ei~~~i~iL~r------------~~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~ 242 (758)
T PRK11034 175 NLNQLARVGGIDPLIGREKELERAIQVLCR------------RRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMAD 242 (758)
T ss_pred hHHHHHHcCCCCcCcCCCHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcC
Confidence 333334456788999999999999887642 124578999999999999999999864 5
Q ss_pred CcEEEEecCccc--hhhhhhhhhhh-----------cceeeeeccccccccCc-chHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 275 ATFFNVSASSLT--SKWVGEGEKLV-----------RTLFMIDSIMSTRMANE-NDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 275 ~~~~~v~~~~l~--~~~~g~~~~~~-----------~~if~IDei~~~~~~~~-~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
..++.++...++ .+|.|+.+..+ ..+++|||++.....+. ......+.+.|...+. .+.+
T Consensus 243 ~~~~~l~~~~llaG~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~------~g~i 316 (758)
T PRK11034 243 CTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLS------SGKI 316 (758)
T ss_pred CeEEeccHHHHhcccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHh------CCCe
Confidence 566666655554 34555544333 35888999987644332 1111222222222222 3458
Q ss_pred EEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcCC-----CCH
Q 012000 341 IVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETEG-----YSG 406 (473)
Q Consensus 341 ~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~g-----~s~ 406 (473)
.|||+|+.++ ..|+++.|||. .|.++.|+.+++..||+.+.. .+++.+++..+..++..+.. +-+
T Consensus 317 ~vIgATt~~E~~~~~~~D~AL~rRFq-~I~v~ePs~~~~~~IL~~~~~~ye~~h~v~i~~~al~~a~~ls~ryi~~r~lP 395 (758)
T PRK11034 317 RVIGSTTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLP 395 (758)
T ss_pred EEEecCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHhhhccCCCcCHHHHHHHHHHhhccccCccCh
Confidence 9999998764 57999999996 599999999999999996543 45778889888887776554 335
Q ss_pred HHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 407 SDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 407 ~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
.....++++|+... ++... ......|+.+|+.+.+....
T Consensus 396 dKaidlldea~a~~--~~~~~-----~~~~~~v~~~~i~~v~~~~t 434 (758)
T PRK11034 396 DKAIDVIDEAGARA--RLMPV-----SKRKKTVNVADIESVVARIA 434 (758)
T ss_pred HHHHHHHHHHHHhh--ccCcc-----cccccccChhhHHHHHHHHh
Confidence 67788888887543 11110 01123588888888887654
No 121
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=5.1e-14 Score=148.22 Aligned_cols=216 Identities=21% Similarity=0.337 Sum_probs=143.0
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch--------
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-------- 287 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-------- 287 (473)
.|..|++++|+++.|++......+. .. ..-++|+||||+|||+|++.||+.++..|+.++...+..
T Consensus 323 ~dHYGLekVKeRIlEyLAV~~l~~~----~k--GpILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHR 396 (782)
T COG0466 323 KDHYGLEKVKERILEYLAVQKLTKK----LK--GPILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHR 396 (782)
T ss_pred ccccCchhHHHHHHHHHHHHHHhcc----CC--CcEEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhcccc
Confidence 3678999999999999864333221 11 235789999999999999999999999999998665422
Q ss_pred -hhhhhhhh----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhc---------CcCC--CCCCcEEEEee
Q 012000 288 -KWVGEGEK----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD---------GVTS--NPNDLVIVMGA 345 (473)
Q Consensus 288 -~~~g~~~~----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld---------g~~~--~~~~~v~vI~t 345 (473)
.|+|.... ....+|.+|||+.+..+........+ |..+| ..-. ..-..|+||+|
T Consensus 397 RTYIGamPGrIiQ~mkka~~~NPv~LLDEIDKm~ss~rGDPaSAL----LEVLDPEQN~~F~DhYLev~yDLS~VmFiaT 472 (782)
T COG0466 397 RTYIGAMPGKIIQGMKKAGVKNPVFLLDEIDKMGSSFRGDPASAL----LEVLDPEQNNTFSDHYLEVPYDLSKVMFIAT 472 (782)
T ss_pred ccccccCChHHHHHHHHhCCcCCeEEeechhhccCCCCCChHHHH----HhhcCHhhcCchhhccccCccchhheEEEee
Confidence 24443221 22468889999988776554443333 33222 1100 01235999999
Q ss_pred cCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhc-----cC-----CCCCChhhHHHHHHHcCCCC-H----HHHH
Q 012000 346 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-----GQ-----AFSLPGGDLERLVRETEGYS-G----SDLQ 410 (473)
Q Consensus 346 Tn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~-----~~-----~~~l~~~~l~~La~~t~g~s-~----~dL~ 410 (473)
+|..+.++.+|+.|+. +|.+.-.+.++..+|-+.||- .. .+.++++.+..|.+....-+ - +.|.
T Consensus 473 ANsl~tIP~PLlDRME-iI~lsgYt~~EKl~IAk~~LiPk~~~~~gL~~~el~i~d~ai~~iI~~YTREAGVR~LeR~i~ 551 (782)
T COG0466 473 ANSLDTIPAPLLDRME-VIRLSGYTEDEKLEIAKRHLIPKQLKEHGLKKGELTITDEAIKDIIRYYTREAGVRNLEREIA 551 (782)
T ss_pred cCccccCChHHhccee-eeeecCCChHHHHHHHHHhcchHHHHHcCCCccceeecHHHHHHHHHHHhHhhhhhHHHHHHH
Confidence 9999999999999995 499999999999999888763 23 34567788888876533222 2 4555
Q ss_pred HHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 411 ALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 411 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
.+|+.++..-+.. .....-.|+..++.+-|..
T Consensus 552 ki~RK~~~~i~~~--------~~k~~~~i~~~~l~~yLG~ 583 (782)
T COG0466 552 KICRKAAKKILLK--------KEKSIVKIDEKNLKKYLGV 583 (782)
T ss_pred HHHHHHHHHHHhc--------CcccceeeCHHHHHHHhCC
Confidence 6666555443321 0111124666666666644
No 122
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.55 E-value=2.4e-13 Score=142.21 Aligned_cols=184 Identities=15% Similarity=0.228 Sum_probs=127.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEecCccchhhhhhhhh-------h-----hcceeeeeccccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTSKWVGEGEK-------L-----VRTLFMIDSIMSTRM 311 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~~~l~~~~~g~~~~-------~-----~~~if~IDei~~~~~ 311 (473)
..+++||||+|||||+|++++++++ +..++.+++.++...+...... . -..++.|||++....
T Consensus 141 ~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~ 220 (450)
T PRK14087 141 YNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAVDILQKTHKEIEQFKNEICQNDVLIIDDVQFLSY 220 (450)
T ss_pred cCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHHHHHHHhhhHHHHHHHHhccCCEEEEeccccccC
Confidence 4579999999999999999999965 4678888888776655432111 1 135788999954432
Q ss_pred cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC---CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCC
Q 012000 312 ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQA 386 (473)
Q Consensus 312 ~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~---Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~ 386 (473)
. .....+|...++...... . .+||++...|.. +++.+++||. ..+.+..|+.++|.+++++.+...+
T Consensus 221 k------~~~~e~lf~l~N~~~~~~-k-~iIltsd~~P~~l~~l~~rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~g 292 (450)
T PRK14087 221 K------EKTNEIFFTIFNNFIEND-K-QLFFSSDKSPELLNGFDNRLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQN 292 (450)
T ss_pred C------HHHHHHHHHHHHHHHHcC-C-cEEEECCCCHHHHhhccHHHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcC
Confidence 1 122334444444333222 2 344444444443 5789999996 5678999999999999999998766
Q ss_pred C--CCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 387 F--SLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 387 ~--~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
+ .++++.+..|+..+.| +.+.|..+|..+...+.... ..++||.+.+.++++.+
T Consensus 293 l~~~l~~evl~~Ia~~~~g-d~R~L~gaL~~l~~~a~~~~----------~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 293 IKQEVTEEAINFISNYYSD-DVRKIKGSVSRLNFWSQQNP----------EEKIITIEIVSDLFRDI 348 (450)
T ss_pred CCCCCCHHHHHHHHHccCC-CHHHHHHHHHHHHHHHhccc----------CCCCCCHHHHHHHHhhc
Confidence 4 6899999999999998 78899999988875543321 01457777777777765
No 123
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.55 E-value=2.1e-14 Score=160.82 Aligned_cols=183 Identities=20% Similarity=0.302 Sum_probs=130.3
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------- 273 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------- 273 (473)
..+.+..++-.+++++|.+...+.+.+.+. +....+++|+||||||||++|+++|..+
T Consensus 166 ~~l~~~~r~~~l~~vigr~~ei~~~i~iL~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~ 233 (857)
T PRK10865 166 IDLTERAEQGKLDPVIGRDEEIRRTIQVLQ------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLK 233 (857)
T ss_pred hhHHHHHhcCCCCcCCCCHHHHHHHHHHHh------------cCCcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhC
Confidence 344555667899999999998777777663 2224579999999999999999999987
Q ss_pred CCcEEEEecCccc--hhhhhhhhhhh------------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 274 QATFFNVSASSLT--SKWVGEGEKLV------------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 274 ~~~~~~v~~~~l~--~~~~g~~~~~~------------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
+.+++.++...+. .+|.|+.+..+ +.+++|||++.....+.........+.|...+ ..+.
T Consensus 234 ~~~~~~l~l~~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~~~d~~~~lkp~l------~~g~ 307 (857)
T PRK10865 234 GRRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPAL------ARGE 307 (857)
T ss_pred CCEEEEEehhhhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCccchhHHHHhcchh------hcCC
Confidence 6788888877765 33545443322 34888999987754432222222222332222 2445
Q ss_pred EEEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC
Q 012000 340 VIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 340 v~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g~s 405 (473)
+.+||+|+..+ .+|+++.|||.. |.++.|+.+++..|++.+... +++.+++..+...+..+++|.
T Consensus 308 l~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~eP~~~~~~~iL~~l~~~~e~~~~v~~~d~a~~~a~~ls~ry~ 381 (857)
T PRK10865 308 LHCVGATTLDEYRQYIEKDAALERRFQK-VFVAEPSVEDTIAILRGLKERYELHHHVQITDPAIVAAATLSHRYI 381 (857)
T ss_pred CeEEEcCCCHHHHHHhhhcHHHHhhCCE-EEeCCCCHHHHHHHHHHHhhhhccCCCCCcCHHHHHHHHHHhhccc
Confidence 89999998876 489999999975 889999999999999876643 356677887777766666544
No 124
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.55 E-value=2.1e-13 Score=139.44 Aligned_cols=213 Identities=19% Similarity=0.168 Sum_probs=135.5
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---------CcEEEEecC
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---------ATFFNVSAS 283 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---------~~~~~v~~~ 283 (473)
..-++++|.++..+.|..++...+. ...+.+++|+||||||||++++++++++. ..++.++|.
T Consensus 12 ~~p~~l~gRe~e~~~l~~~l~~~~~--------~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~ 83 (365)
T TIGR02928 12 YVPDRIVHRDEQIEELAKALRPILR--------GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQ 83 (365)
T ss_pred CCCCCCCCcHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECC
Confidence 3345899999999999988752211 12345799999999999999999998653 567888876
Q ss_pred ccchh----------hh--hh---------------hhh-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcC
Q 012000 284 SLTSK----------WV--GE---------------GEK-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG 331 (473)
Q Consensus 284 ~l~~~----------~~--g~---------------~~~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg 331 (473)
...+. .. +. ... .-..++.|||++....... .++..++...+
T Consensus 84 ~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~-----~~L~~l~~~~~- 157 (365)
T TIGR02928 84 ILDTLYQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDD-----DLLYQLSRARS- 157 (365)
T ss_pred CCCCHHHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCc-----HHHHhHhcccc-
Confidence 43221 10 00 000 1124677999976652211 12333332211
Q ss_pred cCCCCCCcEEEEeecCCCC---CCCHHHhcccc-cccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHH---HcC
Q 012000 332 VTSNPNDLVIVMGATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVR---ETE 402 (473)
Q Consensus 332 ~~~~~~~~v~vI~tTn~~~---~Ld~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~---~t~ 402 (473)
....+..++.+|+++|.++ .+++.+.+||. ..+.|++++.++...+++..+.. ....++++.+..++. .+.
T Consensus 158 ~~~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~ 237 (365)
T TIGR02928 158 NGDLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEH 237 (365)
T ss_pred ccCCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhc
Confidence 1112235688999999886 57889999986 66899999999999999988752 222345665555544 445
Q ss_pred CCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 403 GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 403 g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
|. .+.+..+|+.|+..|..+.. ..|+.+|+..|+..+
T Consensus 238 Gd-~R~al~~l~~a~~~a~~~~~-----------~~it~~~v~~a~~~~ 274 (365)
T TIGR02928 238 GD-ARKAIDLLRVAGEIAEREGA-----------ERVTEDHVEKAQEKI 274 (365)
T ss_pred CC-HHHHHHHHHHHHHHHHHcCC-----------CCCCHHHHHHHHHHH
Confidence 74 55556688888877755421 335555555555444
No 125
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.54 E-value=2.4e-13 Score=136.19 Aligned_cols=208 Identities=18% Similarity=0.226 Sum_probs=132.0
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-------CC--cEEEE
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------QA--TFFNV 280 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~--~~~~v 280 (473)
..+..|++|+|++++++.|.-.+..+ ...|+||+||||||||++|++++.-+ +. .+..+
T Consensus 2 ~~~~~f~~i~Gq~~~~~~l~~~~~~~------------~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~ 69 (334)
T PRK13407 2 KKPFPFSAIVGQEEMKQAMVLTAIDP------------GIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARP 69 (334)
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHhcc------------CCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcc
Confidence 34688999999999999988655321 12589999999999999999999987 22 11111
Q ss_pred ecC---------ccc---------------hhhhh------------------hhhhhhcceeeeeccccccccCcchHH
Q 012000 281 SAS---------SLT---------------SKWVG------------------EGEKLVRTLFMIDSIMSTRMANENDAS 318 (473)
Q Consensus 281 ~~~---------~l~---------------~~~~g------------------~~~~~~~~if~IDei~~~~~~~~~~~~ 318 (473)
.+. .+. ...+| .....-+.++++|++ +...
T Consensus 70 ~~~~~~~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEI--------nrl~ 141 (334)
T PRK13407 70 EDCPEWAHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEV--------NLLE 141 (334)
T ss_pred cCCcccccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecCh--------HhCC
Confidence 000 000 00111 001111246779999 4445
Q ss_pred HHHHHHHHHHhcCc---------CCCCCCcEEEEeecCCCC-CCCHHHhcccccccccCCCcH-HHHHHHHHHHhccC--
Q 012000 319 RRLKSEFLIQFDGV---------TSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPDE-NVRRLLLKHKLKGQ-- 385 (473)
Q Consensus 319 ~~~~~~ll~~ldg~---------~~~~~~~v~vI~tTn~~~-~Ld~al~rRf~~~i~~~~P~~-~~r~~il~~~l~~~-- 385 (473)
..+...|+..|+.- ....+.++++|+|+|..+ .++++++.||...+.++.|.. ++|.+++.......
T Consensus 142 ~~~q~~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~ 221 (334)
T PRK13407 142 DHIVDLLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDAD 221 (334)
T ss_pred HHHHHHHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhccccc
Confidence 56777777777422 112345689999999755 589999999999999998877 88899988743211
Q ss_pred ---------------------------CCCCChhhHHHHHHH---cC-CCCHHHHHHHHHHHHHHhHHHhcccccccccc
Q 012000 386 ---------------------------AFSLPGGDLERLVRE---TE-GYSGSDLQALCEEAAMMPIRELGTNILTVKAN 434 (473)
Q Consensus 386 ---------------------------~~~l~~~~l~~La~~---t~-g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~ 434 (473)
.+.+++..+.+++.. +. .-..++|. +++.|...|+.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~-l~~aA~a~A~l~----------- 289 (334)
T PRK13407 222 HDAFMAKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELT-LLRAARALAAFE----------- 289 (334)
T ss_pred chhhhccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHH-HHHHHHHHHHHc-----------
Confidence 123455555554433 22 12455665 777776666554
Q ss_pred cCCCCcHHHHHHHHH
Q 012000 435 QLRPLRYEDFQKAMA 449 (473)
Q Consensus 435 ~~~~it~~df~~al~ 449 (473)
+...|+.+|+..+..
T Consensus 290 Gr~~V~~~Di~~~~~ 304 (334)
T PRK13407 290 GAEAVGRSHLRSVAT 304 (334)
T ss_pred CCCeeCHHHHHHHHH
Confidence 234588889876653
No 126
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.54 E-value=2.6e-13 Score=128.82 Aligned_cols=190 Identities=24% Similarity=0.340 Sum_probs=125.2
Q ss_pred CCCCccccc-C--hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~div-G--l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
|..+|++++ | .+.+...++.....| ......++||||+|+|||+|++|+++++ +..++.+++
T Consensus 3 ~~~tFdnfv~g~~N~~a~~~~~~ia~~~----------~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~ 72 (219)
T PF00308_consen 3 PKYTFDNFVVGESNELAYAAAKAIAENP----------GERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA 72 (219)
T ss_dssp TT-SCCCS--TTTTHHHHHHHHHHHHST----------TTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH
T ss_pred CCCccccCCcCCcHHHHHHHHHHHHhcC----------CCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH
Confidence 567899985 5 455565555544321 1123469999999999999999999875 577888988
Q ss_pred Cccchhhhhhhhh----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC-
Q 012000 283 SSLTSKWVGEGEK----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE- 351 (473)
Q Consensus 283 ~~l~~~~~g~~~~----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~- 351 (473)
.++...+...... .-..++.||+++..... ......++..++.+... +..+||++...|..
T Consensus 73 ~~f~~~~~~~~~~~~~~~~~~~~~~~DlL~iDDi~~l~~~------~~~q~~lf~l~n~~~~~--~k~li~ts~~~P~~l 144 (219)
T PF00308_consen 73 EEFIREFADALRDGEIEEFKDRLRSADLLIIDDIQFLAGK------QRTQEELFHLFNRLIES--GKQLILTSDRPPSEL 144 (219)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHCTSSEEEEETGGGGTTH------HHHHHHHHHHHHHHHHT--TSEEEEEESS-TTTT
T ss_pred HHHHHHHHHHHHcccchhhhhhhhcCCEEEEecchhhcCc------hHHHHHHHHHHHHHHhh--CCeEEEEeCCCCccc
Confidence 8876655432211 12367889999654321 22344555555544323 22455655566664
Q ss_pred --CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 012000 352 --LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 352 --Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~ 419 (473)
+++.+++||. ..+.+..|+.+.|..+++..+...++.++++.+..|+...++ +.++|..++......
T Consensus 145 ~~~~~~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~l~~~v~~~l~~~~~~-~~r~L~~~l~~l~~~ 215 (219)
T PF00308_consen 145 SGLLPDLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIELPEEVIEYLARRFRR-DVRELEGALNRLDAY 215 (219)
T ss_dssp TTS-HHHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--S-HHHHHHHHHHTTS-SHHHHHHHHHHHHHH
T ss_pred cccChhhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCCCcHHHHHHHHHhhcC-CHHHHHHHHHHHHHH
Confidence 4788999997 467999999999999999999999999999999999999887 788888888776544
No 127
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=99.53 E-value=2.1e-14 Score=112.56 Aligned_cols=71 Identities=15% Similarity=0.248 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 54 ~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
..+|++++++||++|+.|+|++|+.+|++||++|+.++++++++..+..++.++.+|++|||+++++++..
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~~RAE~Lk~~l~~~ 73 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYMDRAEAIKKRLDQE 73 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999999999999999999999999999999999999999999999999999999999997543
No 128
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.52 E-value=3.8e-12 Score=133.61 Aligned_cols=200 Identities=20% Similarity=0.294 Sum_probs=137.2
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-------
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS------- 287 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~------- 287 (473)
=+|..|++++|+++.|++.--..+. ....+-+.|+||||+|||++++.||..+|..|+.++...+..
T Consensus 410 deDHYgm~dVKeRILEfiAV~kLrg------s~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGH 483 (906)
T KOG2004|consen 410 DEDHYGMEDVKERILEFIAVGKLRG------SVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGH 483 (906)
T ss_pred cccccchHHHHHHHHHHHHHHhhcc------cCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhccc
Confidence 3577999999999999986321111 112345789999999999999999999999999998654422
Q ss_pred --hhhhhhhh----hh------cceeeeeccccccccCcchHHHHHHHHHHHHhc---------CcCCC--CCCcEEEEe
Q 012000 288 --KWVGEGEK----LV------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFD---------GVTSN--PNDLVIVMG 344 (473)
Q Consensus 288 --~~~g~~~~----~~------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld---------g~~~~--~~~~v~vI~ 344 (473)
.|+|.... .+ ..+|.|||++......+..... .||..+| .+-.- .-..|++||
T Consensus 484 RRTYVGAMPGkiIq~LK~v~t~NPliLiDEvDKlG~g~qGDPas----ALLElLDPEQNanFlDHYLdVp~DLSkVLFic 559 (906)
T KOG2004|consen 484 RRTYVGAMPGKIIQCLKKVKTENPLILIDEVDKLGSGHQGDPAS----ALLELLDPEQNANFLDHYLDVPVDLSKVLFIC 559 (906)
T ss_pred ceeeeccCChHHHHHHHhhCCCCceEEeehhhhhCCCCCCChHH----HHHHhcChhhccchhhhccccccchhheEEEE
Confidence 24443222 11 3577899998876443333322 2333332 11100 124599999
Q ss_pred ecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----------CCCCCChhhHHHHHHHcCCCC-----HHHH
Q 012000 345 ATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----------QAFSLPGGDLERLVRETEGYS-----GSDL 409 (473)
Q Consensus 345 tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----------~~~~l~~~~l~~La~~t~g~s-----~~dL 409 (473)
|+|..+.|+++|+.|+.. |.++-+..++...|.+.||-. ..+.+++..+..|.+..-.-+ -..|
T Consensus 560 TAN~idtIP~pLlDRMEv-IelsGYv~eEKv~IA~~yLip~a~~~~gl~~e~v~is~~al~~lI~~YcrEaGVRnLqk~i 638 (906)
T KOG2004|consen 560 TANVIDTIPPPLLDRMEV-IELSGYVAEEKVKIAERYLIPQALKDCGLKPEQVKISDDALLALIERYCREAGVRNLQKQI 638 (906)
T ss_pred eccccccCChhhhhhhhe-eeccCccHHHHHHHHHHhhhhHHHHHcCCCHHhcCccHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 999999999999999954 999999999999998887742 234566777776665422112 2578
Q ss_pred HHHHHHHHHHhHHHhc
Q 012000 410 QALCEEAAMMPIRELG 425 (473)
Q Consensus 410 ~~l~~~A~~~a~~~~~ 425 (473)
..+|+.++..-++...
T Consensus 639 ekI~Rk~Al~vv~~~~ 654 (906)
T KOG2004|consen 639 EKICRKVALKVVEGEN 654 (906)
T ss_pred HHHHHHHHHHHHHhhc
Confidence 8899998888777653
No 129
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=99.52 E-value=2.4e-14 Score=111.40 Aligned_cols=69 Identities=20% Similarity=0.229 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 012000 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (473)
Q Consensus 52 ~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~ 120 (473)
+|+.+|++++++||+.|++|+|++|+.+|++||++|+.++++++++..++.++.|+.+|++|||+++..
T Consensus 1 d~l~~A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~~~~~~k~e~~~~~k~~ir~K~~eYl~RAE~i~~~ 69 (75)
T cd02677 1 DYLEQAAELIRLALEKEEEGDYEAAFEFYRAGVDLLLKGVQGDSSPERREAVKRKIAEYLKRAEEILRL 69 (75)
T ss_pred ChHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999999999999999999999999999999998864
No 130
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=99.52 E-value=3.1e-14 Score=111.05 Aligned_cols=69 Identities=17% Similarity=0.206 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 012000 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (473)
Q Consensus 54 ~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~ 122 (473)
+++|++++++||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||+++.++.
T Consensus 3 l~~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~~~k~e~~~~~k~~lr~k~~eyl~RAE~LK~~l~ 71 (75)
T cd02684 3 LEKAIALVVQAVKKDQRGDAAAALSLYCSALQYFVPALHYETDAQRKEALRQKVLQYVSRAEELKALIA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 679999999999999999999999999999999999999999999999999999999999999999853
No 131
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.52 E-value=1.3e-13 Score=155.11 Aligned_cols=196 Identities=19% Similarity=0.293 Sum_probs=137.3
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------- 273 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------- 273 (473)
..+.+..++-.++.++|.++..+.+.+.+. +....+++|+||||||||++|+++|..+
T Consensus 161 ~~l~~~~~~~~~~~~igr~~ei~~~~~~l~------------r~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~ 228 (852)
T TIGR03346 161 RDLTERAREGKLDPVIGRDEEIRRTIQVLS------------RRTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLK 228 (852)
T ss_pred hhHHHHhhCCCCCcCCCcHHHHHHHHHHHh------------cCCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhc
Confidence 345555677899999999998877777663 2224678999999999999999999985
Q ss_pred CCcEEEEecCccc--hhhhhhhhhhh------------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 274 QATFFNVSASSLT--SKWVGEGEKLV------------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 274 ~~~~~~v~~~~l~--~~~~g~~~~~~------------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
+.+++.++...+. .+|.|+.+..+ +.+++|||++.....+.........+.|...+ ..+.
T Consensus 229 ~~~~~~l~~~~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l------~~g~ 302 (852)
T TIGR03346 229 NKRLLALDMGALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPAL------ARGE 302 (852)
T ss_pred CCeEEEeeHHHHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhh------hcCc
Confidence 6778888776664 34555443322 35888999987654332221122222222222 2345
Q ss_pred EEEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC-----
Q 012000 340 VIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS----- 405 (473)
Q Consensus 340 v~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g~s----- 405 (473)
+.+||+|+..+ .+|+++.|||.. |.++.|+.+++..|++.+... +++.+.+..+..++..+.+|-
T Consensus 303 i~~IgaTt~~e~r~~~~~d~al~rRf~~-i~v~~p~~~~~~~iL~~~~~~~e~~~~v~~~d~~i~~~~~ls~~yi~~r~l 381 (852)
T TIGR03346 303 LHCIGATTLDEYRKYIEKDAALERRFQP-VFVDEPTVEDTISILRGLKERYEVHHGVRITDPAIVAAATLSHRYITDRFL 381 (852)
T ss_pred eEEEEeCcHHHHHHHhhcCHHHHhcCCE-EEeCCCCHHHHHHHHHHHHHHhccccCCCCCHHHHHHHHHhccccccccCC
Confidence 89999998763 579999999975 899999999999999876544 456678889999888888765
Q ss_pred HHHHHHHHHHHHH
Q 012000 406 GSDLQALCEEAAM 418 (473)
Q Consensus 406 ~~dL~~l~~~A~~ 418 (473)
+.---.|+++|+.
T Consensus 382 PdkAidlld~a~a 394 (852)
T TIGR03346 382 PDKAIDLIDEAAA 394 (852)
T ss_pred chHHHHHHHHHHH
Confidence 3334445555543
No 132
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.51 E-value=1e-12 Score=135.89 Aligned_cols=215 Identities=18% Similarity=0.174 Sum_probs=143.0
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEecCccch
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASSLTS 287 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~~~l~~ 287 (473)
...+.++|.++..+.|...+...+. ...+..++||||||||||++++.+++++ +..++.+++....+
T Consensus 27 ~~P~~l~~Re~e~~~l~~~l~~~~~--------~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~ 98 (394)
T PRK00411 27 YVPENLPHREEQIEELAFALRPALR--------GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRT 98 (394)
T ss_pred CcCCCCCCHHHHHHHHHHHHHHHhC--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCC
Confidence 3456789999999999888742111 1224579999999999999999999876 57788888754321
Q ss_pred h----------hhh---------------hhhh-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCC
Q 012000 288 K----------WVG---------------EGEK-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 337 (473)
Q Consensus 288 ~----------~~g---------------~~~~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~ 337 (473)
. ..+ .... ....++.|||++....... ...+..++..++... .
T Consensus 99 ~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~----~~~l~~l~~~~~~~~---~ 171 (394)
T PRK00411 99 RYAIFSEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEG----NDVLYSLLRAHEEYP---G 171 (394)
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCC----chHHHHHHHhhhccC---C
Confidence 0 001 0000 1124677999976541111 123445555444332 2
Q ss_pred CcEEEEeecCCCC---CCCHHHhcccc-cccccCCCcHHHHHHHHHHHhccC--CCCCChhhHHHHHHHcCCC--CHHHH
Q 012000 338 DLVIVMGATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQ--AFSLPGGDLERLVRETEGY--SGSDL 409 (473)
Q Consensus 338 ~~v~vI~tTn~~~---~Ld~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~~--~~~l~~~~l~~La~~t~g~--s~~dL 409 (473)
.++.+|+++|.+. .+++.+.+||. ..|.|++++.++...+++..+... ...++++.++.+++.+.+. ..+.+
T Consensus 172 ~~v~vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a 251 (394)
T PRK00411 172 ARIGVIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVA 251 (394)
T ss_pred CeEEEEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHH
Confidence 3588888888764 47888888875 568999999999999999887542 2245788888898887432 34555
Q ss_pred HHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCC
Q 012000 410 QALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 410 ~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
..+|..|+..|..+ ....|+.+|+.+|+..+.+
T Consensus 252 ~~ll~~a~~~a~~~-----------~~~~I~~~~v~~a~~~~~~ 284 (394)
T PRK00411 252 IDLLRRAGLIAERE-----------GSRKVTEEDVRKAYEKSEI 284 (394)
T ss_pred HHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHHHH
Confidence 57778777766543 1245888888888887644
No 133
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.50 E-value=8.3e-13 Score=122.66 Aligned_cols=195 Identities=17% Similarity=0.228 Sum_probs=142.5
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+..++++.+.+|+|.+.+++.|.+..... . .+.|..++||||..|||||+|++|+-+++ +..+++|+..
T Consensus 51 v~~~~~i~L~~l~Gvd~qk~~L~~NT~~F-------~-~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~ 122 (287)
T COG2607 51 VPDPDPIDLADLVGVDRQKEALVRNTEQF-------A-EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKE 122 (287)
T ss_pred CCCCCCcCHHHHhCchHHHHHHHHHHHHH-------H-cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHH
Confidence 45566799999999999999998766422 2 24567899999999999999999998887 5778999887
Q ss_pred ccch--hhhhhhh-hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH------
Q 012000 284 SLTS--KWVGEGE-KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD------ 354 (473)
Q Consensus 284 ~l~~--~~~g~~~-~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~------ 354 (473)
++.. ..++... ...+-|+++|++.-.. .......|-..++|-....+.+|+|.+|+|+-+.|+.
T Consensus 123 dl~~Lp~l~~~Lr~~~~kFIlFcDDLSFe~-------gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~~dn~ 195 (287)
T COG2607 123 DLATLPDLVELLRARPEKFILFCDDLSFEE-------GDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDMKDNE 195 (287)
T ss_pred HHhhHHHHHHHHhcCCceEEEEecCCCCCC-------CchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhhhhCC
Confidence 7643 2222222 2335678899992211 1222344555677776677889999999999776642
Q ss_pred ----------------HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHH----HHcCCCCHHHHHHHHH
Q 012000 355 ----------------AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLV----RETEGYSGSDLQALCE 414 (473)
Q Consensus 355 ----------------al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La----~~t~g~s~~dL~~l~~ 414 (473)
.+-.||...+.|++++.++...|+.++++..++.++++.+..=| ..-.|=||+--.+.++
T Consensus 196 ~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~~~~e~l~~eAl~WAt~rg~RSGR~A~QF~~ 275 (287)
T COG2607 196 GSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLDISDEELHAEALQWATTRGGRSGRVAWQFIR 275 (287)
T ss_pred CcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcCCCccHhHHHHHH
Confidence 22339999999999999999999999999999998876665543 3334567776666655
Q ss_pred HH
Q 012000 415 EA 416 (473)
Q Consensus 415 ~A 416 (473)
..
T Consensus 276 ~~ 277 (287)
T COG2607 276 DL 277 (287)
T ss_pred HH
Confidence 54
No 134
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.50 E-value=1.2e-13 Score=154.73 Aligned_cols=196 Identities=22% Similarity=0.292 Sum_probs=137.6
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------- 273 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------- 273 (473)
..+.+....-.|+.++|.++.++.+.+.+. .+.++++||+||||||||++|+++|..+
T Consensus 167 ~~l~~~a~~~~~~~~igr~~ei~~~~~~L~------------r~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~ 234 (821)
T CHL00095 167 TNLTKEAIDGNLDPVIGREKEIERVIQILG------------RRTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILE 234 (821)
T ss_pred HHHHHHHHcCCCCCCCCcHHHHHHHHHHHc------------ccccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhc
Confidence 344444556789999999999999998874 2335689999999999999999999986
Q ss_pred CCcEEEEecCccc--hhhhhhhhhhh-----------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 274 QATFFNVSASSLT--SKWVGEGEKLV-----------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 274 ~~~~~~v~~~~l~--~~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
+.+++.++...++ .+|.|+.+..+ +.|++|||++.....+.........+-|...+. .+.+
T Consensus 235 ~~~i~~l~~~~l~ag~~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~------rg~l 308 (821)
T CHL00095 235 DKLVITLDIGLLLAGTKYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALA------RGEL 308 (821)
T ss_pred CCeEEEeeHHHHhccCCCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHh------CCCc
Confidence 4789999987765 35556554433 347789999865543321111122222222322 3448
Q ss_pred EEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcCCCCH-----
Q 012000 341 IVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETEGYSG----- 406 (473)
Q Consensus 341 ~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~g~s~----- 406 (473)
.+||+|+..+ ..|+++.+||.. |.++.|+.++...|++.... .+++.++++.+..++..+.+|.+
T Consensus 309 ~~IgaTt~~ey~~~ie~D~aL~rRf~~-I~v~ep~~~e~~aILr~l~~~~e~~~~v~i~deal~~i~~ls~~yi~~r~lP 387 (821)
T CHL00095 309 QCIGATTLDEYRKHIEKDPALERRFQP-VYVGEPSVEETIEILFGLRSRYEKHHNLSISDKALEAAAKLSDQYIADRFLP 387 (821)
T ss_pred EEEEeCCHHHHHHHHhcCHHHHhcceE-EecCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhhccCccccCc
Confidence 8999998754 579999999975 78999999999888875432 34566789999999998888764
Q ss_pred HHHHHHHHHHHH
Q 012000 407 SDLQALCEEAAM 418 (473)
Q Consensus 407 ~dL~~l~~~A~~ 418 (473)
.-.-.++++|+.
T Consensus 388 dkaidlld~a~a 399 (821)
T CHL00095 388 DKAIDLLDEAGS 399 (821)
T ss_pred hHHHHHHHHHHH
Confidence 333345555543
No 135
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.50 E-value=5.2e-13 Score=146.82 Aligned_cols=196 Identities=17% Similarity=0.234 Sum_probs=140.7
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-----hhhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-----KWVG 291 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-----~~~g 291 (473)
.|+|++++++.|.+.+..... ......+|..++||+||||||||++|+++|..++.+++.++++++.. +.+|
T Consensus 459 ~ViGQ~~ai~~l~~~i~~~~~---gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG 535 (758)
T PRK11034 459 LVFGQDKAIEALTEAIKMSRA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_pred eEeCcHHHHHHHHHHHHHHhc---cccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcC
Confidence 379999999999998863211 01111344457999999999999999999999999999999887532 2222
Q ss_pred h------------hh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-CCCC------CCcEEEEeecCC
Q 012000 292 E------------GE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-TSNP------NDLVIVMGATNK 348 (473)
Q Consensus 292 ~------------~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-~~~~------~~~v~vI~tTn~ 348 (473)
. .. ..-..+++|||++. .+..+.+.|+..|+.- .... -.+++||+|||.
T Consensus 536 ~~~gyvg~~~~g~L~~~v~~~p~sVlllDEiek--------a~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~TsN~ 607 (758)
T PRK11034 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK--------AHPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_pred CCCCcccccccchHHHHHHhCCCcEEEeccHhh--------hhHHHHHHHHHHHhcCeeecCCCceecCCCcEEEEeCCc
Confidence 1 01 11236889999944 3456778888888732 1111 135789999983
Q ss_pred C-------------------------CCCCHHHhcccccccccCCCcHHHHHHHHHHHhc---------cCCCCCChhhH
Q 012000 349 P-------------------------QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK---------GQAFSLPGGDL 394 (473)
Q Consensus 349 ~-------------------------~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~---------~~~~~l~~~~l 394 (473)
- ..+.|.++.|++.++.|++.+.++..+|+..++. +..+.+++..+
T Consensus 608 g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~l~~~~i~l~~~~~~~ 687 (758)
T PRK11034 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQLDQKGVSLEVSQEAR 687 (758)
T ss_pred CHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHHHHHCCCCceECHHHH
Confidence 2 1256899999999999999999999998887654 23455688899
Q ss_pred HHHHHHc--CCCCHHHHHHHHHHHHHHhHHH
Q 012000 395 ERLVRET--EGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 395 ~~La~~t--~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
+.|+... ..|-++.|+.+++.-...++.+
T Consensus 688 ~~l~~~~~~~~~GAR~l~r~i~~~l~~~la~ 718 (758)
T PRK11034 688 DWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_pred HHHHHhCCCCCCCCchHHHHHHHHHHHHHHH
Confidence 9999753 2466889999998887777664
No 136
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.50 E-value=6.7e-13 Score=146.92 Aligned_cols=218 Identities=18% Similarity=0.277 Sum_probs=148.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch---------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS--------- 287 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~--------- 287 (473)
|+.|++.+|+.+.+++....... ......++|+||||||||++++.+|..++.+|+.++......
T Consensus 323 ~~~g~~~vK~~i~~~l~~~~~~~------~~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~ 396 (784)
T PRK10787 323 DHYGLERVKDRILEYLAVQSRVN------KIKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRR 396 (784)
T ss_pred hccCHHHHHHHHHHHHHHHHhcc------cCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchh
Confidence 58999999999999886433211 112346999999999999999999999999999888664321
Q ss_pred hhhhhhhh----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-----C------CCCCCcEEEEeec
Q 012000 288 KWVGEGEK----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-----T------SNPNDLVIVMGAT 346 (473)
Q Consensus 288 ~~~g~~~~----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-----~------~~~~~~v~vI~tT 346 (473)
.|.|.... ....++.|||++......... ....|+..+|.- . ...-.++++|+|+
T Consensus 397 ~~~g~~~G~~~~~l~~~~~~~~villDEidk~~~~~~g~----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~Ta 472 (784)
T PRK10787 397 TYIGSMPGKLIQKMAKVGVKNPLFLLDEIDKMSSDMRGD----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATS 472 (784)
T ss_pred ccCCCCCcHHHHHHHhcCCCCCEEEEEChhhcccccCCC----HHHHHHHHhccccEEEEecccccccccCCceEEEEcC
Confidence 23322111 123478899998765432221 234556555521 0 0112568999999
Q ss_pred CCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----------CCCCCChhhHHHHHHH-cCCCCHHHHHHHHHH
Q 012000 347 NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----------QAFSLPGGDLERLVRE-TEGYSGSDLQALCEE 415 (473)
Q Consensus 347 n~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----------~~~~l~~~~l~~La~~-t~g~s~~dL~~l~~~ 415 (473)
|.. .|+++|++||. .|.+..++.++..+|.+.++.. ..+.+++..+..|++. +..+-.+.|..+++.
T Consensus 473 N~~-~i~~aLl~R~~-ii~~~~~t~eek~~Ia~~~L~~k~~~~~~l~~~~l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~ 550 (784)
T PRK10787 473 NSM-NIPAPLLDRME-VIRLSGYTEDEKLNIAKRHLLPKQIERNALKKGELTVDDSAIIGIIRYYTREAGVRSLEREISK 550 (784)
T ss_pred CCC-CCCHHHhccee-eeecCCCCHHHHHHHHHHhhhHHHHHHhCCCCCeEEECHHHHHHHHHhCCcccCCcHHHHHHHH
Confidence 987 59999999996 5889999999999999888741 2345678888888864 334556788888887
Q ss_pred HHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 416 AAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 416 A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
.+..++.+.... .....-.|+.+++.+.|..
T Consensus 551 i~r~~l~~~~~~----~~~~~v~v~~~~~~~~lg~ 581 (784)
T PRK10787 551 LCRKAVKQLLLD----KSLKHIEINGDNLHDYLGV 581 (784)
T ss_pred HHHHHHHHHHhc----CCCceeeecHHHHHHHhCC
Confidence 776666553211 0011135788888877753
No 137
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.49 E-value=6.5e-14 Score=108.87 Aligned_cols=68 Identities=21% Similarity=0.184 Sum_probs=64.4
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHH
Q 012000 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQV 121 (473)
Q Consensus 54 ~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~raek~k~~i 121 (473)
-.+|++++++||++|+.|+|++|+.+|++||++|+.+++++ +|+..+..++.|+.+|++|||++++++
T Consensus 3 e~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~~~~~~~n~~~k~~ir~K~~eYl~RAE~Lk~~l 71 (76)
T cd02681 3 ERDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIYAEMAGTLNDSHLKTIQEKSNEYLDRAQALHQLV 71 (76)
T ss_pred HHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 36899999999999999999999999999999999998887 899999999999999999999999884
No 138
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.48 E-value=8.7e-13 Score=135.27 Aligned_cols=208 Identities=24% Similarity=0.310 Sum_probs=141.9
Q ss_pred ccChHHHHHHHHHHHhchhcchhhh-hc-----CCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhh
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLF-TG-----LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWV 290 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~-~~-----~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~ 290 (473)
|+|++++++.|..++.....+-... .. ......++||+||||||||++|+++|..++.+|..+++..+.. .|+
T Consensus 79 ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~gyv 158 (413)
T TIGR00382 79 VIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAGYV 158 (413)
T ss_pred ecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccccc
Confidence 7999999999988774322221110 00 1122468999999999999999999999999999998877643 465
Q ss_pred hhhh----------------hhhcceeeeeccccccccCcc------hHHHHHHHHHHHHhcCcCCC---------CCCc
Q 012000 291 GEGE----------------KLVRTLFMIDSIMSTRMANEN------DASRRLKSEFLIQFDGVTSN---------PNDL 339 (473)
Q Consensus 291 g~~~----------------~~~~~if~IDei~~~~~~~~~------~~~~~~~~~ll~~ldg~~~~---------~~~~ 339 (473)
|... ..-+.+++|||++.......+ -....+.+.||..|+|.... +..+
T Consensus 159 G~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~~~ 238 (413)
T TIGR00382 159 GEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPYQE 238 (413)
T ss_pred cccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccCCC
Confidence 5421 112347889999765432111 11225778888888765321 1234
Q ss_pred EEEEeecCCCC--------------------------------------------------CCCHHHhcccccccccCCC
Q 012000 340 VIVMGATNKPQ--------------------------------------------------ELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 340 v~vI~tTn~~~--------------------------------------------------~Ld~al~rRf~~~i~~~~P 369 (473)
.++|.|+|-.. .+.|+++.|++.++.|.+.
T Consensus 239 ~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~pL 318 (413)
T TIGR00382 239 FIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLEKL 318 (413)
T ss_pred eEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecCCC
Confidence 67777776510 1347788899999999999
Q ss_pred cHHHHHHHHHHH----h-------c--cCCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 370 DENVRRLLLKHK----L-------K--GQAFSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 370 ~~~~r~~il~~~----l-------~--~~~~~l~~~~l~~La~~--t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+.++..+|+... + . ...+.+++..++.|++. ...+-++.|+.+++......+-++-
T Consensus 319 ~~~~L~~Il~~~~n~l~kq~~~~l~~~gi~L~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~l~~~m~e~p 389 (413)
T TIGR00382 319 DEEALIAILTKPKNALVKQYQALFKMDNVELDFEEEALKAIAKKALERKTGARGLRSIVEGLLLDVMFDLP 389 (413)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhccCCeEEEECHHHHHHHHHhCCCCCCCchHHHHHHHHhhHHHHhhCC
Confidence 999998887652 2 1 23344588899999987 3467789999999998887776653
No 139
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=99.47 E-value=1.2e-13 Score=109.04 Aligned_cols=74 Identities=27% Similarity=0.348 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 51 k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
+.++++|++++.+||+.|++|+|++|+.+|++|+++|+.+++.++++..+..++.++.+|++|||+++..+..|
T Consensus 2 ~~~~~~A~~li~~Av~~d~~g~~~eAl~~Y~~a~e~l~~~~~~~~~~~~~~~~~~k~~eyl~raE~lk~~~~~r 75 (77)
T smart00745 2 RDYLSKAKELISKALKADEAGDYEEALELYKKAIEYLLEGIKVESDSKRREAVKAKAAEYLDRAEEIKKSLLER 75 (77)
T ss_pred ccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 56899999999999999999999999999999999999999999998899999999999999999999997654
No 140
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.45 E-value=5.9e-12 Score=127.89 Aligned_cols=192 Identities=22% Similarity=0.348 Sum_probs=132.9
Q ss_pred CCCCcccccCh---HHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 211 PSVKWEDVAGL---EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~divGl---~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
|..+|++++.- .-+......+...| +.+...++||||.|+|||+|++|++++. +..++.++.
T Consensus 82 ~~ytFdnFv~g~~N~~A~aa~~~va~~~----------g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~s 151 (408)
T COG0593 82 PKYTFDNFVVGPSNRLAYAAAKAVAENP----------GGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTS 151 (408)
T ss_pred CCCchhheeeCCchHHHHHHHHHHHhcc----------CCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccH
Confidence 56788886543 33333333333222 2234579999999999999999999986 456888888
Q ss_pred Cccchhhhhhhhh---------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCC-
Q 012000 283 SSLTSKWVGEGEK---------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL- 352 (473)
Q Consensus 283 ~~l~~~~~g~~~~---------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~L- 352 (473)
.++...++..... .--.++.||++....... +...+|...+..+... +.-+|+.+...|..+
T Consensus 152 e~f~~~~v~a~~~~~~~~Fk~~y~~dlllIDDiq~l~gk~------~~qeefFh~FN~l~~~--~kqIvltsdr~P~~l~ 223 (408)
T COG0593 152 EDFTNDFVKALRDNEMEKFKEKYSLDLLLIDDIQFLAGKE------RTQEEFFHTFNALLEN--GKQIVLTSDRPPKELN 223 (408)
T ss_pred HHHHHHHHHHHHhhhHHHHHHhhccCeeeechHhHhcCCh------hHHHHHHHHHHHHHhc--CCEEEEEcCCCchhhc
Confidence 7776665544322 113467799995433221 2233444444433322 224566666667765
Q ss_pred --CHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 012000 353 --DDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 353 --d~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~ 421 (473)
.+.|++||. .++.+.+|+.+.|..++.......++.++++.+..||...+. +.++|..++......+.
T Consensus 224 ~~~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~i~~ev~~~la~~~~~-nvReLegaL~~l~~~a~ 295 (408)
T COG0593 224 GLEDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIEIPDEVLEFLAKRLDR-NVRELEGALNRLDAFAL 295 (408)
T ss_pred cccHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhc-cHHHHHHHHHHHHHHHH
Confidence 589999998 557899999999999999999999999999999999999887 78888888877666553
No 141
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=99.45 E-value=1.5e-13 Score=105.97 Aligned_cols=68 Identities=29% Similarity=0.347 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~ 120 (473)
|+++|++++++||+.|+.|+|++|+.+|++|+++|+.+++.++++..+..++.|+.+|++|||++++.
T Consensus 1 y~~~A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~~~yl~RAE~lk~~ 68 (69)
T PF04212_consen 1 YLDKAIELIKKAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKMKEYLERAEKLKEY 68 (69)
T ss_dssp -HHHHHHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 68999999999999999999999999999999999999999999999999999999999999999876
No 142
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.45 E-value=4.8e-12 Score=127.16 Aligned_cols=152 Identities=20% Similarity=0.305 Sum_probs=103.5
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-------CcEE-----
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFF----- 278 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-------~~~~----- 278 (473)
+...|++|+|++++|..|.-.++.| ...|+||.||+|||||++|++++..+. .+|.
T Consensus 12 ~~~pf~~ivGq~~~k~al~~~~~~p------------~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~ 79 (350)
T CHL00081 12 PVFPFTAIVGQEEMKLALILNVIDP------------KIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSD 79 (350)
T ss_pred CCCCHHHHhChHHHHHHHHHhccCC------------CCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCC
Confidence 4568999999999999998877643 135899999999999999999977652 1221
Q ss_pred ----------------------------EEecCccchhhhh------------------hhhhhhcceeeeecccccccc
Q 012000 279 ----------------------------NVSASSLTSKWVG------------------EGEKLVRTLFMIDSIMSTRMA 312 (473)
Q Consensus 279 ----------------------------~v~~~~l~~~~~g------------------~~~~~~~~if~IDei~~~~~~ 312 (473)
.+...-..+..+| .....-+.++++|++
T Consensus 80 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEI------ 153 (350)
T CHL00081 80 PELMSDEVREAIQNGETIETEKIKIPMVDLPLGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEV------ 153 (350)
T ss_pred hhhhchhhhhhhcccccccceeccccceecCCCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecCh------
Confidence 1111000111111 011122367779999
Q ss_pred CcchHHHHHHHHHHHHhcC---------cCCCCCCcEEEEeecCCCC-CCCHHHhcccccccccCCCc-HHHHHHHHHHH
Q 012000 313 NENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPD-ENVRRLLLKHK 381 (473)
Q Consensus 313 ~~~~~~~~~~~~ll~~ldg---------~~~~~~~~v~vI~tTn~~~-~Ld~al~rRf~~~i~~~~P~-~~~r~~il~~~ 381 (473)
+.....+...|+..|+. .....+.++++|+|.|..+ .+.++++.||...+.+..|+ .+.+.+|++..
T Consensus 154 --nrL~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~ 231 (350)
T CHL00081 154 --NLLDDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQR 231 (350)
T ss_pred --HhCCHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhh
Confidence 34445566667766642 2222345789999888766 59999999999999999997 58998988875
Q ss_pred h
Q 012000 382 L 382 (473)
Q Consensus 382 l 382 (473)
.
T Consensus 232 ~ 232 (350)
T CHL00081 232 T 232 (350)
T ss_pred h
Confidence 3
No 143
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.44 E-value=1.4e-12 Score=132.28 Aligned_cols=230 Identities=20% Similarity=0.293 Sum_probs=151.5
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhh-
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE- 292 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~- 292 (473)
-|+|++++|+.|..++.....+..+.... ..+|+++||+||||||||++|+++|..++.+|+.+++..+.. .|+|.
T Consensus 13 ~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~d 92 (441)
T TIGR00390 13 YIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 92 (441)
T ss_pred hccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccCC
Confidence 48999999999988886543333222222 234689999999999999999999999999999999876643 44441
Q ss_pred hhhhh---------------------------------------------------------------------------
Q 012000 293 GEKLV--------------------------------------------------------------------------- 297 (473)
Q Consensus 293 ~~~~~--------------------------------------------------------------------------- 297 (473)
.+..+
T Consensus 93 vE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 172 (441)
T TIGR00390 93 VESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIEI 172 (441)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEEE
Confidence 11100
Q ss_pred ---------------------------------------------------------------------------cceee
Q 012000 298 ---------------------------------------------------------------------------RTLFM 302 (473)
Q Consensus 298 ---------------------------------------------------------------------------~~if~ 302 (473)
..+++
T Consensus 173 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIVf 252 (441)
T TIGR00390 173 DVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGIIF 252 (441)
T ss_pred eecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 12344
Q ss_pred eecccccccc----CcchHHHHHHHHHHHHhcCcCCC------CCCcEEEEeec----CCCCCCCHHHhcccccccccCC
Q 012000 303 IDSIMSTRMA----NENDASRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 303 IDei~~~~~~----~~~~~~~~~~~~ll~~ldg~~~~------~~~~v~vI~tT----n~~~~Ld~al~rRf~~~i~~~~ 368 (473)
||||+..... +.+-....+...||..++|-..+ ..++|++||+. ..|.+|-|.|..||..++.+..
T Consensus 253 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 332 (441)
T TIGR00390 253 IDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQA 332 (441)
T ss_pred EEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 7777654322 11222234666777777764221 13568888875 4678899999999999999999
Q ss_pred CcHHHHHHHHH-----------HHhccCCC--CCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHHhcccc
Q 012000 369 PDENVRRLLLK-----------HKLKGQAF--SLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPIRELGTNI 428 (473)
Q Consensus 369 P~~~~r~~il~-----------~~l~~~~~--~l~~~~l~~La~~t-------~g~s~~dL~~l~~~A~~~a~~~~~~~~ 428 (473)
++.+....||. .++...++ .++++.+..||+.+ ++.-.+-|..++........-+.-.
T Consensus 333 L~~edL~rILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtilE~~l~d~~fe~p~-- 410 (441)
T TIGR00390 333 LTTDDFERILTEPKNSLIKQYKALMKTEGVNIEFSDEAIKRIAELAYNVNEKTENIGARRLHTVLERLLEDISFEAPD-- 410 (441)
T ss_pred CCHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEeHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHHhcCCC--
Confidence 99999988773 22333443 44788888888765 4555677888887776655433211
Q ss_pred cccccccCCCCcHHHHHHHHHhh
Q 012000 429 LTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 429 ~~~~~~~~~~it~~df~~al~~~ 451 (473)
.....-.|+.+-+...+..+
T Consensus 411 ---~~~~~v~I~~~~V~~~l~~~ 430 (441)
T TIGR00390 411 ---LSGQNITIDADYVSKKLGAL 430 (441)
T ss_pred ---CCCCEEEECHHHHHhHHHHH
Confidence 01222346776666666554
No 144
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.44 E-value=6e-12 Score=135.87 Aligned_cols=206 Identities=17% Similarity=0.178 Sum_probs=133.4
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------CCcEEEEecCcc
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSL 285 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~~v~~~~l 285 (473)
+.|.|.++..+.|..++.-.+. ...+...++|+|+||||||++++.+.+++ ...++.|+|..+
T Consensus 755 D~LPhREeEIeeLasfL~paIk-------gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~L 827 (1164)
T PTZ00112 755 KYLPCREKEIKEVHGFLESGIK-------QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNV 827 (1164)
T ss_pred CcCCChHHHHHHHHHHHHHHHh-------cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCcc
Confidence 6799999999999988853222 12233446799999999999999998766 256788888543
Q ss_pred chhh---------h-hh-----------hhhh---------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC
Q 012000 286 TSKW---------V-GE-----------GEKL---------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 335 (473)
Q Consensus 286 ~~~~---------~-g~-----------~~~~---------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~ 335 (473)
...+ + +. .... ...|+.||||+...... . ..|+..++... .
T Consensus 828 stp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~-----Q---DVLYnLFR~~~-~ 898 (1164)
T PTZ00112 828 VHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKT-----Q---KVLFTLFDWPT-K 898 (1164)
T ss_pred CCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccH-----H---HHHHHHHHHhh-c
Confidence 2111 0 00 0000 01367799997654321 1 22333333222 2
Q ss_pred CCCcEEEEeecCC---CCCCCHHHhccccc-ccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc---CCCCHHH
Q 012000 336 PNDLVIVMGATNK---PQELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET---EGYSGSD 408 (473)
Q Consensus 336 ~~~~v~vI~tTn~---~~~Ld~al~rRf~~-~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t---~g~s~~d 408 (473)
...+++|||++|. +..|++.+++||.. .+.|++++.+++..||+..+......++++.+..+|+.. .|. .+.
T Consensus 899 s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGD-ARK 977 (1164)
T PTZ00112 899 INSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGD-IRK 977 (1164)
T ss_pred cCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCH-HHH
Confidence 3456899999986 55678899999874 488999999999999999887544456888898888843 352 333
Q ss_pred HHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 409 LQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 409 L~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
.-.+|+.|+..+ + ...|+.+|+.+|+..+.
T Consensus 978 ALDILRrAgEik--e------------gskVT~eHVrkAleeiE 1007 (1164)
T PTZ00112 978 ALQICRKAFENK--R------------GQKIVPRDITEATNQLF 1007 (1164)
T ss_pred HHHHHHHHHhhc--C------------CCccCHHHHHHHHHHHH
Confidence 334555555321 0 12577777777776653
No 145
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.44 E-value=6.4e-13 Score=122.70 Aligned_cols=185 Identities=17% Similarity=0.173 Sum_probs=130.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEE
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNV 280 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v 280 (473)
.|++|+|+.+.||||.++..+.|.-+.. ... ..+++|.|||||||||-+.++|+++= --++++
T Consensus 17 wVeKYrP~~l~dIVGNe~tv~rl~via~----------~gn--mP~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLEL 84 (333)
T KOG0991|consen 17 WVEKYRPSVLQDIVGNEDTVERLSVIAK----------EGN--MPNLIISGPPGTGKTTSILCLARELLGDSYKEAVLEL 84 (333)
T ss_pred HHHhhCchHHHHhhCCHHHHHHHHHHHH----------cCC--CCceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhc
Confidence 5778999999999999999999986653 122 24899999999999999999999872 235677
Q ss_pred ecCccchh------hhhhhhhhh------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 281 SASSLTSK------WVGEGEKLV------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 281 ~~~~l~~~------~~g~~~~~~------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
++++-..- .-.-+++.+ ..++.+||.+++... ....+-..|+-... ...+..++|.
T Consensus 85 NASdeRGIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSMT~g--------AQQAlRRtMEiyS~----ttRFalaCN~ 152 (333)
T KOG0991|consen 85 NASDERGIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSMTAG--------AQQALRRTMEIYSN----TTRFALACNQ 152 (333)
T ss_pred cCccccccHHHHHHHHHHHHhhccCCCCceeEEEeeccchhhhH--------HHHHHHHHHHHHcc----cchhhhhhcc
Confidence 77754221 101111222 357779999665432 22223333332221 2457778999
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHH
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEE 415 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~ 415 (473)
...+-+++.+||.. +.+...+..+...-+....+.+++.++++.++.+...++|.....|.+|-..
T Consensus 153 s~KIiEPIQSRCAi-LRysklsd~qiL~Rl~~v~k~Ekv~yt~dgLeaiifta~GDMRQalNnLQst 218 (333)
T KOG0991|consen 153 SEKIIEPIQSRCAI-LRYSKLSDQQILKRLLEVAKAEKVNYTDDGLEAIIFTAQGDMRQALNNLQST 218 (333)
T ss_pred hhhhhhhHHhhhHh-hhhcccCHHHHHHHHHHHHHHhCCCCCcchHHHhhhhccchHHHHHHHHHHH
Confidence 99999999999976 5666666666666666677888899999999999999999777666666443
No 146
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.43 E-value=2.2e-12 Score=143.04 Aligned_cols=196 Identities=19% Similarity=0.240 Sum_probs=139.8
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh--------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-------- 288 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-------- 288 (473)
.|+|++++++.|.+.+.... ..+....+|...+||+||||||||+||+++|..++.+++.++++++...
T Consensus 455 ~v~GQ~~ai~~l~~~i~~~~---~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig 531 (731)
T TIGR02639 455 KIFGQDEAIDSLVSSIKRSR---AGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIG 531 (731)
T ss_pred ceeCcHHHHHHHHHHHHHHh---cCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhc
Confidence 47888888888888775321 1111122344468999999999999999999999999999998775331
Q ss_pred ----hhhh-----hhh----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-------CCCcEEEEeecCC
Q 012000 289 ----WVGE-----GEK----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PNDLVIVMGATNK 348 (473)
Q Consensus 289 ----~~g~-----~~~----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-------~~~~v~vI~tTn~ 348 (473)
|+|. ... .-..++.|||++.. +....+.|++.|+.-.-. .-.+++||+|||.
T Consensus 532 ~~~gyvg~~~~~~l~~~~~~~p~~VvllDEieka--------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~Tsn~ 603 (731)
T TIGR02639 532 APPGYVGFEQGGLLTEAVRKHPHCVLLLDEIEKA--------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIMTSNA 603 (731)
T ss_pred CCCCCcccchhhHHHHHHHhCCCeEEEEechhhc--------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEECCCc
Confidence 2221 111 12368889999533 445677788877643110 1135788889876
Q ss_pred CC-------------------------CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc-------C--CCCCChhhH
Q 012000 349 PQ-------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG-------Q--AFSLPGGDL 394 (473)
Q Consensus 349 ~~-------------------------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~-------~--~~~l~~~~l 394 (473)
.. .+.|.++.||+.++.|.+.+.++...|++..+.+ . .+.+++..+
T Consensus 604 g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~l~~~~~~l~i~~~a~ 683 (731)
T TIGR02639 604 GASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQLNEKNIKLELTDDAK 683 (731)
T ss_pred chhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEeCHHHH
Confidence 32 2577888999999999999999999999987753 2 356688899
Q ss_pred HHHHHH--cCCCCHHHHHHHHHHHHHHhHHH
Q 012000 395 ERLVRE--TEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 395 ~~La~~--t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
+.|+.. ...|.++.|+.+++.....++.+
T Consensus 684 ~~La~~~~~~~~GaR~l~r~i~~~~~~~l~~ 714 (731)
T TIGR02639 684 KYLAEKGYDEEFGARPLARVIQEEIKKPLSD 714 (731)
T ss_pred HHHHHhCCCcccCchHHHHHHHHHhHHHHHH
Confidence 999985 44577899999999888777654
No 147
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.42 E-value=2.2e-11 Score=122.05 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=115.9
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC--------cEEEEec---
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------TFFNVSA--- 282 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--------~~~~v~~--- 282 (473)
+|++|+|++.+++.|...+. ....++.+||+||+|+|||++|+++|+.+.+ .++.+..
T Consensus 2 ~~~~i~g~~~~~~~l~~~~~-----------~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~ 70 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSII-----------KNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINK 70 (313)
T ss_pred ChhhccCcHHHHHHHHHHHH-----------cCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccC
Confidence 69999999999999998874 3344678999999999999999999997632 2233322
Q ss_pred Cccchhhhhh--------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH
Q 012000 283 SSLTSKWVGE--------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD 354 (473)
Q Consensus 283 ~~l~~~~~g~--------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~ 354 (473)
..+...-+-+ .-..-+.++.||+.+ .......+.||..++ .++..+++|.+|+.++.+.+
T Consensus 71 ~~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad--------~m~~~a~naLLK~LE----epp~~t~~il~~~~~~~ll~ 138 (313)
T PRK05564 71 KSIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSE--------KMTEQAQNAFLKTIE----EPPKGVFIILLCENLEQILD 138 (313)
T ss_pred CCCCHHHHHHHHHHHhcCcccCCceEEEEechh--------hcCHHHHHHHHHHhc----CCCCCeEEEEEeCChHhCcH
Confidence 1111000000 001123567788873 233445678888887 44555777777788899999
Q ss_pred HHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 012000 355 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 355 al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
.+++||. .+.|+.|+.++....+...+. .+++..+..++..+.|-.+.-
T Consensus 139 TI~SRc~-~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~l~~~~~g~~~~a 187 (313)
T PRK05564 139 TIKSRCQ-IYKLNRLSKEEIEKFISYKYN----DIKEEEKKSAIAFSDGIPGKV 187 (313)
T ss_pred HHHhhce-eeeCCCcCHHHHHHHHHHHhc----CCCHHHHHHHHHHcCCCHHHH
Confidence 9999996 589999999888777766543 346777888888888744433
No 148
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.42 E-value=2.5e-12 Score=135.27 Aligned_cols=202 Identities=19% Similarity=0.236 Sum_probs=138.5
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhc--hhcc---------------hhhhhcC----CCC-CceEEEEcCCCCcHH
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVIL--PAKR---------------RDLFTGL----RRP-ARGLLLFGPPGNGKT 263 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~--p~~~---------------~~~~~~~----~~~-~~~iLL~GPpGtGKT 263 (473)
-|+++.|..|.|+.|.+.+-+.+..|+.. |--+ .+.+... .+| .+-+||+||||-|||
T Consensus 261 WVdky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKT 340 (877)
T KOG1969|consen 261 WVDKYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKT 340 (877)
T ss_pred eecccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChh
Confidence 37889999999999999999998888742 1111 1112111 223 356889999999999
Q ss_pred HHHHHHHHHcCCcEEEEecCccchhh-----hhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 264 MLAKAVASESQATFFNVSASSLTSKW-----VGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 264 ~La~aiA~e~~~~~~~v~~~~l~~~~-----~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
|||+.||+.+|..++++++++-.+.- +... ...-+.++.||||++.. ...+..++..+.
T Consensus 341 TLAHViAkqaGYsVvEINASDeRt~~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa~--------~~~Vdvilslv~ 412 (877)
T KOG1969|consen 341 TLAHVIAKQAGYSVVEINASDERTAPMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGAP--------RAAVDVILSLVK 412 (877)
T ss_pred HHHHHHHHhcCceEEEecccccccHHHHHHHHHHHHhhccccccCCCcceEEEecccCCc--------HHHHHHHHHHHH
Confidence 99999999999999999998753311 1100 11224567799995433 333333333332
Q ss_pred -------CcCCCCC----------CcEEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCCh
Q 012000 331 -------GVTSNPN----------DLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPG 391 (473)
Q Consensus 331 -------g~~~~~~----------~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~ 391 (473)
|-..... =.-.|||.||... -|+|+. -|..+|+|+.|......+-|+.++..+++..+.
T Consensus 413 a~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr~d~ 490 (877)
T KOG1969|consen 413 ATNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMRADS 490 (877)
T ss_pred hhcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCCCCH
Confidence 1111000 0125788888644 577765 688999999999999999999999999999888
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 012000 392 GDLERLVRETEGYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 392 ~~l~~La~~t~g~s~~dL~~l~~~A~~~a~ 421 (473)
..+..|++.|++ ||+..++...+.+.
T Consensus 491 ~aL~~L~el~~~----DIRsCINtLQfLa~ 516 (877)
T KOG1969|consen 491 KALNALCELTQN----DIRSCINTLQFLAS 516 (877)
T ss_pred HHHHHHHHHhcc----hHHHHHHHHHHHHH
Confidence 999999999988 55555555444443
No 149
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.42 E-value=6.1e-12 Score=122.87 Aligned_cols=125 Identities=23% Similarity=0.332 Sum_probs=87.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc------cchhhhhhhh----------------------------
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS------LTSKWVGEGE---------------------------- 294 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~------l~~~~~g~~~---------------------------- 294 (473)
..++||+||||||||++|+++|..++.+++.+++.. ++..+.+...
T Consensus 21 g~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~ 100 (262)
T TIGR02640 21 GYPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLT 100 (262)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHH
Confidence 357999999999999999999999999999887653 2222211000
Q ss_pred --hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC----C---C-----CCCcEEEEeecCCCC-----CCCHH
Q 012000 295 --KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT----S---N-----PNDLVIVMGATNKPQ-----ELDDA 355 (473)
Q Consensus 295 --~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~----~---~-----~~~~v~vI~tTn~~~-----~Ld~a 355 (473)
..-..++.|||+... .....+.|+..|+.-. . . ....+.||+|+|... .++++
T Consensus 101 ~A~~~g~~lllDEi~r~--------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~a 172 (262)
T TIGR02640 101 LAVREGFTLVYDEFTRS--------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQDA 172 (262)
T ss_pred HHHHcCCEEEEcchhhC--------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccHH
Confidence 011257779999443 3345556666554211 0 0 113578999999763 67899
Q ss_pred HhcccccccccCCCcHHHHHHHHHHHh
Q 012000 356 VLRRLVKRIYVPLPDENVRRLLLKHKL 382 (473)
Q Consensus 356 l~rRf~~~i~~~~P~~~~r~~il~~~l 382 (473)
+++||. .++++.|+.++..+|+..++
T Consensus 173 L~~R~~-~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 173 LLDRLI-TIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHhhcE-EEECCCCCHHHHHHHHHHhh
Confidence 999995 58999999999999998875
No 150
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=99.42 E-value=4.7e-13 Score=104.88 Aligned_cols=71 Identities=18% Similarity=0.240 Sum_probs=67.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 012000 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (473)
Q Consensus 52 ~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~ 122 (473)
+++++|+.++++||+.|+.|+|++|+.+|.+|+++|+.+++.++++..+..++.++.+|++|||+++..++
T Consensus 1 ~~~~~A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~RaE~LK~~l~ 71 (75)
T cd02678 1 DFLQKAIELVKKAIEEDNAGNYEEALRLYQHALEYFMHALKYEKNPKSKESIRAKCTEYLDRAEKLKEYLA 71 (75)
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 37899999999999999999999999999999999999999999999999999999999999999998853
No 151
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=3.4e-11 Score=122.56 Aligned_cols=176 Identities=19% Similarity=0.157 Sum_probs=119.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-------------
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------------- 276 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~------------- 276 (473)
.+|.++++|+|++.+++.|.+.+. ..+.++.+||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~ 81 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-----------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPT 81 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccc
Confidence 367899999999999999998885 23446789999999999999999999976321
Q ss_pred ---------------------EEEEecC--ccch---h--hhhhhhh-----------hhcceeeeeccccccccCcchH
Q 012000 277 ---------------------FFNVSAS--SLTS---K--WVGEGEK-----------LVRTLFMIDSIMSTRMANENDA 317 (473)
Q Consensus 277 ---------------------~~~v~~~--~l~~---~--~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~ 317 (473)
++.+... +-.. . .+.+... .-..|+.||+++ ..
T Consensus 82 ~l~~~~~c~~c~~i~~~~HPDl~~i~~~~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead--------~m 153 (365)
T PRK07471 82 SLAIDPDHPVARRIAAGAHGGLLTLERSWNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTAD--------EM 153 (365)
T ss_pred cccCCCCChHHHHHHccCCCCeEEEecccccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechH--------hc
Confidence 1111100 0000 0 0111111 112466788873 33
Q ss_pred HHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHH
Q 012000 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERL 397 (473)
Q Consensus 318 ~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~L 397 (473)
.....+.||+.++ .++...++|.+|+.++.+.+.+++||.. +.|+.|+.++..+++..... ..++..+..+
T Consensus 154 ~~~aanaLLK~LE----epp~~~~~IL~t~~~~~llpti~SRc~~-i~l~~l~~~~i~~~L~~~~~----~~~~~~~~~l 224 (365)
T PRK07471 154 NANAANALLKVLE----EPPARSLFLLVSHAPARLLPTIRSRCRK-LRLRPLAPEDVIDALAAAGP----DLPDDPRAAL 224 (365)
T ss_pred CHHHHHHHHHHHh----cCCCCeEEEEEECCchhchHHhhccceE-EECCCCCHHHHHHHHHHhcc----cCCHHHHHHH
Confidence 4456677888887 3445577888899999999999999965 89999999999888877542 2244455778
Q ss_pred HHHcCCCCHHHHHHHHH
Q 012000 398 VRETEGYSGSDLQALCE 414 (473)
Q Consensus 398 a~~t~g~s~~dL~~l~~ 414 (473)
+..+.| ++.....+++
T Consensus 225 ~~~s~G-sp~~Al~ll~ 240 (365)
T PRK07471 225 AALAEG-SVGRALRLAG 240 (365)
T ss_pred HHHcCC-CHHHHHHHhc
Confidence 888888 4444444443
No 152
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.41 E-value=8.6e-12 Score=126.26 Aligned_cols=180 Identities=19% Similarity=0.166 Sum_probs=123.2
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-------EEEE-e
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------FFNV-S 281 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-------~~~v-~ 281 (473)
..|..+++|+|++++++.|...+. ....++.+||+||+|+|||++|+.+|+.+.+. .... .
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-----------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~ 85 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-----------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADP 85 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-----------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCC
Confidence 357899999999999999999885 23446789999999999999999999987541 1000 0
Q ss_pred c---C-----------ccc--h-----------h--hhhhhh-----------hhhcceeeeeccccccccCcchHHHHH
Q 012000 282 A---S-----------SLT--S-----------K--WVGEGE-----------KLVRTLFMIDSIMSTRMANENDASRRL 321 (473)
Q Consensus 282 ~---~-----------~l~--~-----------~--~~g~~~-----------~~~~~if~IDei~~~~~~~~~~~~~~~ 321 (473)
+ . ++. . . .+.+.. ..-..|+.||+++. .....
T Consensus 86 ~~~c~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~--------l~~~a 157 (351)
T PRK09112 86 DPASPVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADD--------MNRNA 157 (351)
T ss_pred CCCCHHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhh--------cCHHH
Confidence 0 0 000 0 0 001100 01124667888843 33445
Q ss_pred HHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 012000 322 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 401 (473)
Q Consensus 322 ~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 401 (473)
.+.||+.++. ++.+.++|..|+.+..+.+.+++||. .+.+++|+.++...++.......+ +++..+..++..+
T Consensus 158 anaLLk~LEE----pp~~~~fiLit~~~~~llptIrSRc~-~i~l~pl~~~~~~~~L~~~~~~~~--~~~~~~~~i~~~s 230 (351)
T PRK09112 158 ANAILKTLEE----PPARALFILISHSSGRLLPTIRSRCQ-PISLKPLDDDELKKALSHLGSSQG--SDGEITEALLQRS 230 (351)
T ss_pred HHHHHHHHhc----CCCCceEEEEECChhhccHHHHhhcc-EEEecCCCHHHHHHHHHHhhcccC--CCHHHHHHHHHHc
Confidence 6678888874 34456667778889999999999994 699999999999999887543333 4577788999988
Q ss_pred CCCCHHHHHHHHHHH
Q 012000 402 EGYSGSDLQALCEEA 416 (473)
Q Consensus 402 ~g~s~~dL~~l~~~A 416 (473)
.| +++...+++...
T Consensus 231 ~G-~pr~Al~ll~~~ 244 (351)
T PRK09112 231 KG-SVRKALLLLNYG 244 (351)
T ss_pred CC-CHHHHHHHHhcC
Confidence 88 455555555443
No 153
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.41 E-value=2.5e-12 Score=130.49 Aligned_cols=230 Identities=20% Similarity=0.269 Sum_probs=151.9
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCC--CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGEG 293 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~--~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~~ 293 (473)
.|+|++++|+.|..++.....+..+..... ..+.++||+||||||||++|+++|..++.+|+.+++..+.. .|+|..
T Consensus 16 ~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~d 95 (443)
T PRK05201 16 YIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGRD 95 (443)
T ss_pred ccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccCC
Confidence 389999999999988865433332222221 23589999999999999999999999999999999876653 354410
Q ss_pred -hh-----------------------------------------------------------------------------
Q 012000 294 -EK----------------------------------------------------------------------------- 295 (473)
Q Consensus 294 -~~----------------------------------------------------------------------------- 295 (473)
+.
T Consensus 96 ~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~iei 175 (443)
T PRK05201 96 VESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIEI 175 (443)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEEE
Confidence 00
Q ss_pred ------------------------------------------------------------------------hhcceeee
Q 012000 296 ------------------------------------------------------------------------LVRTLFMI 303 (473)
Q Consensus 296 ------------------------------------------------------------------------~~~~if~I 303 (473)
.-..+++|
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVfi 255 (443)
T PRK05201 176 EVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVFI 255 (443)
T ss_pred EecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEEE
Confidence 01235557
Q ss_pred eccccccccC----cchHHHHHHHHHHHHhcCcCCC------CCCcEEEEeec----CCCCCCCHHHhcccccccccCCC
Q 012000 304 DSIMSTRMAN----ENDASRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 304 Dei~~~~~~~----~~~~~~~~~~~ll~~ldg~~~~------~~~~v~vI~tT----n~~~~Ld~al~rRf~~~i~~~~P 369 (473)
|||+...... .+-....+...||..++|-..+ ..++|++||+- ..|.+|-|.|..||..++.+..+
T Consensus 256 DEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~L 335 (443)
T PRK05201 256 DEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDAL 335 (443)
T ss_pred EcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCCC
Confidence 8887643221 2222344677888888874221 13568888775 56788999999999999999999
Q ss_pred cHHHHHHHHH-----------HHhccCCC--CCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 370 DENVRRLLLK-----------HKLKGQAF--SLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 370 ~~~~r~~il~-----------~~l~~~~~--~l~~~~l~~La~~t-------~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
+.+....||. .++...++ .++++.+..||+.+ ++.-.+-|..++........-+.-..
T Consensus 336 ~~~dL~~ILteP~nsLikQy~~Lf~~egv~L~Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~E~~L~d~~Fe~p~~-- 413 (443)
T PRK05201 336 TEEDFVRILTEPKASLIKQYQALLATEGVTLEFTDDAIRRIAEIAYQVNEKTENIGARRLHTVMEKLLEDISFEAPDM-- 413 (443)
T ss_pred CHHHHHHHhcCChhHHHHHHHHHHhhcCcEEEEcHHHHHHHHHHHHHhcccccccchhhHHHHHHHHHHHHhccCCCC--
Confidence 9999888773 12333343 45788888888765 35456778888877765543332110
Q ss_pred ccccccCCCCcHHHHHHHHHhh
Q 012000 430 TVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~ 451 (473)
....-.|+.+-+...+..+
T Consensus 414 ---~~~~v~I~~~~V~~~l~~l 432 (443)
T PRK05201 414 ---SGETVTIDAAYVDEKLGDL 432 (443)
T ss_pred ---CCCEEEECHHHHHHHHHHH
Confidence 1122346666665555443
No 154
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.38 E-value=2.2e-11 Score=122.30 Aligned_cols=206 Identities=17% Similarity=0.235 Sum_probs=128.1
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-------CCcEE--------
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------QATFF-------- 278 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~~~~-------- 278 (473)
.|..|+|++++|..|.-.+..| ...+++|.|+||+|||+|+++++..+ +.++-
T Consensus 2 pf~~ivgq~~~~~al~~~~~~~------------~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~ 69 (337)
T TIGR02030 2 PFTAIVGQDEMKLALLLNVIDP------------KIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEM 69 (337)
T ss_pred CccccccHHHHHHHHHHHhcCC------------CCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccc
Confidence 4889999999999987666533 13579999999999999999999766 22111
Q ss_pred -EEec-------------------Cccc-----hhhhhh------------------hhhhhcceeeeeccccccccCcc
Q 012000 279 -NVSA-------------------SSLT-----SKWVGE------------------GEKLVRTLFMIDSIMSTRMANEN 315 (473)
Q Consensus 279 -~v~~-------------------~~l~-----~~~~g~------------------~~~~~~~if~IDei~~~~~~~~~ 315 (473)
..+| .++- ....|. ..+.-+.++++|++.
T Consensus 70 ~~~~~r~~~~~~~~~~~~~~~~~~~~lP~~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~-------- 141 (337)
T TIGR02030 70 MCEEVRIRVDSQEPLSIIKKPVPVVDLPLGATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVN-------- 141 (337)
T ss_pred cChHHhhhhhcccccccccCCCCcCCCCCCCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChH--------
Confidence 0000 0000 011111 011123577799994
Q ss_pred hHHHHHHHHHHHHhcC---------cCCCCCCcEEEEeecCCCC-CCCHHHhcccccccccCCCcH-HHHHHHHHHHhcc
Q 012000 316 DASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLPDE-NVRRLLLKHKLKG 384 (473)
Q Consensus 316 ~~~~~~~~~ll~~ldg---------~~~~~~~~v~vI~tTn~~~-~Ld~al~rRf~~~i~~~~P~~-~~r~~il~~~l~~ 384 (473)
.....+...|+..|+. .....+.++++|+|+|..+ .+.++++.||...+.++.|.. ++|.+|++.....
T Consensus 142 ~L~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~ 221 (337)
T TIGR02030 142 LLEDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEY 221 (337)
T ss_pred hCCHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhc
Confidence 3345566667766642 1112245689999988766 699999999999999999876 8888888774221
Q ss_pred -----------------------------CCCCCChhhHHHHHH---HcCCCCHHHHHHHHHHHHHHhHHHhcccccccc
Q 012000 385 -----------------------------QAFSLPGGDLERLVR---ETEGYSGSDLQALCEEAAMMPIRELGTNILTVK 432 (473)
Q Consensus 385 -----------------------------~~~~l~~~~l~~La~---~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~ 432 (473)
..+.+++..+.+++. .+..-+.+.-..+++.|...|..+
T Consensus 222 ~~~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~--------- 292 (337)
T TIGR02030 222 DADPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFE--------- 292 (337)
T ss_pred ccCchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHc---------
Confidence 123345555555443 333334444445556555555433
Q ss_pred cccCCCCcHHHHHHHHHh
Q 012000 433 ANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 433 ~~~~~~it~~df~~al~~ 450 (473)
+...++.+|+..+..-
T Consensus 293 --GR~~V~~dDv~~~a~~ 308 (337)
T TIGR02030 293 --GRTEVTVDDIRRVAVL 308 (337)
T ss_pred --CCCCCCHHHHHHHHHH
Confidence 2346888999877653
No 155
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=99.37 E-value=1.4e-12 Score=100.47 Aligned_cols=68 Identities=26% Similarity=0.330 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 012000 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQV 121 (473)
Q Consensus 54 ~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i 121 (473)
-+.|..++.+||++|..|+|++|+.+|++||++|+++++.++|...+..+++++.+|++|++.+++.+
T Consensus 3 ~~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~Rae~Lk~~v 70 (75)
T cd02682 3 EEMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKRRIEVLEKQN 70 (75)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 36799999999999999999999999999999999999999999999999999999999999999884
No 156
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.37 E-value=4.6e-11 Score=116.81 Aligned_cols=116 Identities=22% Similarity=0.234 Sum_probs=87.7
Q ss_pred EEEeecCC------------CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 012000 341 IVMGATNK------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 341 ~vI~tTn~------------~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
++|.+||+ |+-++..++.|.. +|...+.+.++..+|++..+...++.++++.++.|+.....-|-+-
T Consensus 322 Iii~AtNRG~~kiRGTd~~sPhGIP~DlLDRll-II~t~py~~~EireIi~iRa~ee~i~l~~~Ale~L~~ig~etSLRY 400 (450)
T COG1224 322 IIILATNRGMTKIRGTDIESPHGIPLDLLDRLL-IISTRPYSREEIREIIRIRAKEEDIELSDDALEYLTDIGEETSLRY 400 (450)
T ss_pred EEEEEcCCceeeecccCCcCCCCCCHhhhhhee-EEecCCCCHHHHHHHHHHhhhhhccccCHHHHHHHHhhchhhhHHH
Confidence 55666765 7788999999985 4788888999999999999999999999999999999877666666
Q ss_pred HHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhh
Q 012000 409 LQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREF 470 (473)
Q Consensus 409 L~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~ 470 (473)
-.+|+.-|...|-++- ...+..+|++.|-.-+.-. +...+.+++|...|
T Consensus 401 a~qLL~pa~iiA~~rg-----------~~~V~~~dVe~a~~lF~D~--krSv~~v~~~~~~~ 449 (450)
T COG1224 401 AVQLLTPASIIAKRRG-----------SKRVEVEDVERAKELFLDV--KRSVEYVEKYEGLL 449 (450)
T ss_pred HHHhccHHHHHHHHhC-----------CCeeehhHHHHHHHHHhhH--HHHHHHHHHHHhhc
Confidence 6677777776765552 2357889999998876432 23445566665543
No 157
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.37 E-value=8.7e-11 Score=116.42 Aligned_cols=128 Identities=16% Similarity=0.188 Sum_probs=89.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh--hhhhhh------h--------------hhcceeeeecc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK--WVGEGE------K--------------LVRTLFMIDSI 306 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~--~~g~~~------~--------------~~~~if~IDei 306 (473)
.++|||.||||||||++|+.+|..++.+++.+++...+.. ++|... . .-..++.+||+
T Consensus 64 ~~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~~g~illlDEi 143 (327)
T TIGR01650 64 DRRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQHNVALCFDEY 143 (327)
T ss_pred CCcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHhCCeEEEechh
Confidence 4679999999999999999999999999999987654333 233210 0 11235779999
Q ss_pred ccccccCcchHHHHHHHHHHHHhcC---c-------CCCCCCcEEEEeecCCCC------------CCCHHHhccccccc
Q 012000 307 MSTRMANENDASRRLKSEFLIQFDG---V-------TSNPNDLVIVMGATNKPQ------------ELDDAVLRRLVKRI 364 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ll~~ldg---~-------~~~~~~~v~vI~tTn~~~------------~Ld~al~rRf~~~i 364 (473)
...+. .....|...++. + .-.+...+.||+|+|... .++++++.||...+
T Consensus 144 n~a~p--------~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i~~ 215 (327)
T TIGR01650 144 DAGRP--------DVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSIVT 215 (327)
T ss_pred hccCH--------HHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheeeEe
Confidence 65443 233333333331 0 001234589999999854 46899999999888
Q ss_pred ccCCCcHHHHHHHHHHHhcc
Q 012000 365 YVPLPDENVRRLLLKHKLKG 384 (473)
Q Consensus 365 ~~~~P~~~~r~~il~~~l~~ 384 (473)
.++.|+.++-..|+......
T Consensus 216 ~~~Yp~~e~E~~Il~~~~~~ 235 (327)
T TIGR01650 216 TLNYLEHDNEAAIVLAKAKG 235 (327)
T ss_pred eCCCCCHHHHHHHHHhhccC
Confidence 99999999999998876543
No 158
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=1e-10 Score=116.79 Aligned_cols=173 Identities=16% Similarity=0.168 Sum_probs=114.7
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-----------------
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT----------------- 276 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~----------------- 276 (473)
.|++|+|++.+++.|...+. ..+.++++||+||+|+||+++|.++|+.+-+.
T Consensus 2 ~f~~iiGq~~~~~~L~~~i~-----------~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hP 70 (314)
T PRK07399 2 LFANLIGQPLAIELLTAAIK-----------QNRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHP 70 (314)
T ss_pred cHHHhCCHHHHHHHHHHHHH-----------hCCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCC
Confidence 58999999999999999985 23446799999999999999999999986321
Q ss_pred -EEEEecCccc-hh--------h------------hhhhhhh-----------hcceeeeeccccccccCcchHHHHHHH
Q 012000 277 -FFNVSASSLT-SK--------W------------VGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKS 323 (473)
Q Consensus 277 -~~~v~~~~l~-~~--------~------------~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~ 323 (473)
++.+.+.... .+ . +...+.. -+.|+.||+.+ .......+
T Consensus 71 Dl~~i~p~~~~~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae--------~m~~~aaN 142 (314)
T PRK07399 71 DLLWVEPTYQHQGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAE--------TMNEAAAN 142 (314)
T ss_pred CEEEEeccccccccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchh--------hcCHHHHH
Confidence 1211111000 00 0 0010111 12455677763 23344567
Q ss_pred HHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 012000 324 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 403 (473)
Q Consensus 324 ~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g 403 (473)
.||+.|+. ++ +.++|.+|+.++.|-+.+++||.. +.|+.|+.++...++......... +.++..++..+.|
T Consensus 143 aLLK~LEE----Pp-~~~fILi~~~~~~Ll~TI~SRcq~-i~f~~l~~~~~~~~L~~~~~~~~~---~~~~~~l~~~a~G 213 (314)
T PRK07399 143 ALLKTLEE----PG-NGTLILIAPSPESLLPTIVSRCQI-IPFYRLSDEQLEQVLKRLGDEEIL---NINFPELLALAQG 213 (314)
T ss_pred HHHHHHhC----CC-CCeEEEEECChHhCcHHHHhhceE-EecCCCCHHHHHHHHHHhhccccc---hhHHHHHHHHcCC
Confidence 88888874 34 346777888999999999999965 899999999998888876432221 2235788888888
Q ss_pred CCHHHHHHHHHH
Q 012000 404 YSGSDLQALCEE 415 (473)
Q Consensus 404 ~s~~dL~~l~~~ 415 (473)
- ++....+++.
T Consensus 214 s-~~~al~~l~~ 224 (314)
T PRK07399 214 S-PGAAIANIEQ 224 (314)
T ss_pred C-HHHHHHHHHH
Confidence 4 4444444443
No 159
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.32 E-value=6.7e-11 Score=129.04 Aligned_cols=207 Identities=18% Similarity=0.241 Sum_probs=131.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc--------------------
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------------------- 273 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------------------- 273 (473)
.|.+|+|++.++..|.-.++.| ...||||+||||||||++|++|+..+
T Consensus 2 pf~~ivGq~~~~~al~~~av~~------------~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~ 69 (633)
T TIGR02442 2 PFTAIVGQEDLKLALLLNAVDP------------RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEE 69 (633)
T ss_pred CcchhcChHHHHHHHHHHhhCC------------CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccc
Confidence 4889999999998887666532 12479999999999999999999887
Q ss_pred ---------------CCcEEEEecCccchhhhhh------------------hhhhhcceeeeeccccccccCcchHHHH
Q 012000 274 ---------------QATFFNVSASSLTSKWVGE------------------GEKLVRTLFMIDSIMSTRMANENDASRR 320 (473)
Q Consensus 274 ---------------~~~~~~v~~~~l~~~~~g~------------------~~~~~~~if~IDei~~~~~~~~~~~~~~ 320 (473)
..+|+.+.+.......+|. ....-..+++||++ +.....
T Consensus 70 ~~~~~~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi--------~~l~~~ 141 (633)
T TIGR02442 70 WCEECRRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEV--------NLLDDH 141 (633)
T ss_pred cChhhhhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChh--------hhCCHH
Confidence 2466665544332222221 01112357889999 444556
Q ss_pred HHHHHHHHhcCc---------CCCCCCcEEEEeecCCC-CCCCHHHhcccccccccCCCc-HHHHHHHHHHHhcc-----
Q 012000 321 LKSEFLIQFDGV---------TSNPNDLVIVMGATNKP-QELDDAVLRRLVKRIYVPLPD-ENVRRLLLKHKLKG----- 384 (473)
Q Consensus 321 ~~~~ll~~ldg~---------~~~~~~~v~vI~tTn~~-~~Ld~al~rRf~~~i~~~~P~-~~~r~~il~~~l~~----- 384 (473)
+.+.|+..|+.- ....+.+++||+|+|.. ..+.++|+.||..++.++.|. .+++.+++...+..
T Consensus 142 ~q~~Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~ 221 (633)
T TIGR02442 142 LVDVLLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPE 221 (633)
T ss_pred HHHHHHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcH
Confidence 677777777521 11223458999999864 368999999999888888764 56777776653220
Q ss_pred ------------------------CCCCCChhhHHHHHHHcC--CC-CHHHHHHHHHHHHHHhHHHhcccccccccccCC
Q 012000 385 ------------------------QAFSLPGGDLERLVRETE--GY-SGSDLQALCEEAAMMPIRELGTNILTVKANQLR 437 (473)
Q Consensus 385 ------------------------~~~~l~~~~l~~La~~t~--g~-s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~ 437 (473)
..+.+++..+..|+..+. |. +.+-...+++.|...|.-+ +..
T Consensus 222 ~~~~~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~-----------gr~ 290 (633)
T TIGR02442 222 AFAARWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALD-----------GRR 290 (633)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc-----------CCC
Confidence 123445556666655443 22 2333334555453333222 235
Q ss_pred CCcHHHHHHHHHhh
Q 012000 438 PLRYEDFQKAMAVI 451 (473)
Q Consensus 438 ~it~~df~~al~~~ 451 (473)
.|+.+|+..|+.-+
T Consensus 291 ~V~~~Dv~~A~~lv 304 (633)
T TIGR02442 291 RVTAEDVREAAELV 304 (633)
T ss_pred cCCHHHHHHHHHHH
Confidence 68889998887754
No 160
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=99.32 E-value=5e-12 Score=99.20 Aligned_cols=70 Identities=26% Similarity=0.290 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVS 122 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~ 122 (473)
++++|++++++||+.|+.|+|++|+.+|.+|+++|+.+++.++++..+..++.++.+|++|||+++..+.
T Consensus 2 ~~~~a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl~RaE~Lk~~l~ 71 (75)
T cd02656 2 LLQQAKELIKQAVKEDEDGNYEEALELYKEALDYLLQALKAEKEPKLRKLLRKKVKEYLDRAEFLKELLK 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5789999999999999999999999999999999999999999999999999999999999999998853
No 161
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.31 E-value=6.3e-11 Score=133.46 Aligned_cols=198 Identities=19% Similarity=0.256 Sum_probs=139.3
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh---
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--- 288 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~--- 288 (473)
...|+|++.+++.|.+.+..... ......+|...+||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~---gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~ 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRA---GLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSV 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhc---cCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchH
Confidence 34699999999999998863211 011123445679999999999999999999987 468888888765321
Q ss_pred --h-------hhhh---------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-CCC------CCcEEEE
Q 012000 289 --W-------VGEG---------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------NDLVIVM 343 (473)
Q Consensus 289 --~-------~g~~---------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-~~~------~~~v~vI 343 (473)
. +|.. ...-..++.||+++ ..+..+.+.|+..|+.-. ... -.+.+||
T Consensus 641 ~~l~g~~~g~~g~~~~g~l~~~v~~~p~~vlllDeie--------ka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI 712 (852)
T TIGR03346 641 ARLIGAPPGYVGYEEGGQLTEAVRRKPYSVVLFDEVE--------KAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVII 712 (852)
T ss_pred HHhcCCCCCccCcccccHHHHHHHcCCCcEEEEeccc--------cCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEE
Confidence 1 1111 11123588899994 344566777777775321 110 1346788
Q ss_pred eecCCCCC-------------------------CCHHHhcccccccccCCCcHHHHHHHHHHHhcc-------C--CCCC
Q 012000 344 GATNKPQE-------------------------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG-------Q--AFSL 389 (473)
Q Consensus 344 ~tTn~~~~-------------------------Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~-------~--~~~l 389 (473)
+|||.... +.|.|+.|++.++.|.+++.+....|+...+.. . .+.+
T Consensus 713 ~TSn~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~l~~~~~~l~i 792 (852)
T TIGR03346 713 MTSNLGSQFIQELAGGDDYEEMREAVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKRLAERKITLEL 792 (852)
T ss_pred EeCCcchHhHhhhcccccHHHHHHHHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHHHHHCCCeecC
Confidence 99987321 346788899999999999999999888876642 2 3567
Q ss_pred ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 390 PGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 390 ~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
++..++.|++... .+..+.|.++++.....++.+
T Consensus 793 ~~~a~~~L~~~~~~~~~gaR~L~~~i~~~i~~~l~~ 828 (852)
T TIGR03346 793 SDAALDFLAEAGYDPVYGARPLKRAIQREIENPLAK 828 (852)
T ss_pred CHHHHHHHHHhCCCCCCCchhHHHHHHHHHHHHHHH
Confidence 8999999998743 577899999999998887765
No 162
>PRK04132 replication factor C small subunit; Provisional
Probab=99.29 E-value=2.4e-11 Score=133.88 Aligned_cols=185 Identities=16% Similarity=0.163 Sum_probs=131.6
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEc--CCCCcHHHHHHHHHHHc-----CCcEEE
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFG--PPGNGKTMLAKAVASES-----QATFFN 279 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~G--PpGtGKT~La~aiA~e~-----~~~~~~ 279 (473)
.-.....-||+|+-.++.+.. ++++ .+.-|.-+-+..| |++.||||+|+++|+++ +.+++.
T Consensus 534 ~~~~~~~~~~~~~~~~~~~~~---~~~~---------~~~~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lE 601 (846)
T PRK04132 534 FLAQNELYWDEITEVEELKGD---FIIY---------DLHVPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLE 601 (846)
T ss_pred eecccchhHHhhHhHHhccCc---eEEE---------EeccCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEE
Confidence 334445667776544433321 1222 1233445567778 99999999999999997 568999
Q ss_pred EecCccch-----hhhhhhhh--h----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 280 VSASSLTS-----KWVGEGEK--L----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 280 v~~~~l~~-----~~~g~~~~--~----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
+++++..+ ..+..... . -..+++|||++... ....+.|+..|+ .++.++.+|++||.
T Consensus 602 lNASd~rgid~IR~iIk~~a~~~~~~~~~~KVvIIDEaD~Lt--------~~AQnALLk~lE----ep~~~~~FILi~N~ 669 (846)
T PRK04132 602 LNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--------QDAQQALRRTME----MFSSNVRFILSCNY 669 (846)
T ss_pred EeCCCcccHHHHHHHHHHHHhcCCcCCCCCEEEEEECcccCC--------HHHHHHHHHHhh----CCCCCeEEEEEeCC
Confidence 99998421 11111111 0 12588899995543 345677888887 34556889999999
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
++.+.+++++||.. +.|+.|+.++....++..+.++++.++++.+..|+..+.|.. +..-++++.++
T Consensus 670 ~~kIi~tIrSRC~~-i~F~~ls~~~i~~~L~~I~~~Egi~i~~e~L~~Ia~~s~GDl-R~AIn~Lq~~~ 736 (846)
T PRK04132 670 SSKIIEPIQSRCAI-FRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEGDM-RRAINILQAAA 736 (846)
T ss_pred hhhCchHHhhhceE-EeCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCH-HHHHHHHHHHH
Confidence 99999999999955 899999999999999999888888889999999999999954 44445555544
No 163
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=99.29 E-value=8.7e-12 Score=96.36 Aligned_cols=64 Identities=17% Similarity=0.214 Sum_probs=60.1
Q ss_pred HHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHH----HHHHHHHHHHHHH
Q 012000 54 FELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVK----SYRQKISKWQSQV 121 (473)
Q Consensus 54 ~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~----~y~~raek~k~~i 121 (473)
+++|+.++++|++.|++|+|++|+.+|.+|+++|+. ++++..++.++.|+. +|++|||+++.++
T Consensus 3 l~kai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~----ekn~~~k~~i~~K~~~~a~~yl~RAE~Lk~~l 70 (75)
T cd02680 3 LERAHFLVTQAFDEDEKGNAEEAIELYTEAVELCIN----TSNETMDQALQTKLKQLARQALDRAEALKESM 70 (75)
T ss_pred HHHHHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHH----hcChhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999998 578889999999996 9999999999884
No 164
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.29 E-value=5.7e-11 Score=133.05 Aligned_cols=196 Identities=20% Similarity=0.295 Sum_probs=135.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh----
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---- 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~---- 288 (473)
..|+|++++++.+.+.+...... .....+|-..+||+||||||||.+|+++|..+ ...++.++++++...
T Consensus 566 ~~v~GQ~~Av~~v~~~i~~~~~g---l~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~ 642 (852)
T TIGR03345 566 ERVIGQDHALEAIAERIRTARAG---LEDPRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVS 642 (852)
T ss_pred CeEcChHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhc
Confidence 46899999999999998643110 01112232348999999999999999999988 457888887765321
Q ss_pred --------hhhhh---------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-CCC------CCcEEEEe
Q 012000 289 --------WVGEG---------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SNP------NDLVIVMG 344 (473)
Q Consensus 289 --------~~g~~---------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-~~~------~~~v~vI~ 344 (473)
|+|.. ...-..++.|||++ ..+..+.+.|+..++.-. ... -.+.+||.
T Consensus 643 ~l~g~~~gyvg~~~~g~L~~~v~~~p~svvllDEie--------ka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~ 714 (852)
T TIGR03345 643 RLKGSPPGYVGYGEGGVLTEAVRRKPYSVVLLDEVE--------KAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILL 714 (852)
T ss_pred cccCCCCCcccccccchHHHHHHhCCCcEEEEechh--------hcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEE
Confidence 33321 11224688899994 334456667777775331 110 13578888
Q ss_pred ecCCCC-----------------------------CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----------C
Q 012000 345 ATNKPQ-----------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----------Q 385 (473)
Q Consensus 345 tTn~~~-----------------------------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----------~ 385 (473)
|||... .+.|++++|++ +|.|.+.+.++...|+...+.. .
T Consensus 715 TSNlg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~rl~~~~gi 793 (852)
T TIGR03345 715 TSNAGSDLIMALCADPETAPDPEALLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARRLKENHGA 793 (852)
T ss_pred eCCCchHHHHHhccCcccCcchHHHHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 988521 14678888997 7889999999999998876643 2
Q ss_pred CCCCChhhHHHHHHHcCC--CCHHHHHHHHHHHHHHhHHH
Q 012000 386 AFSLPGGDLERLVRETEG--YSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 386 ~~~l~~~~l~~La~~t~g--~s~~dL~~l~~~A~~~a~~~ 423 (473)
.+.+++..++.|+....+ |-++.|.++++.-...++.+
T Consensus 794 ~l~i~d~a~~~La~~g~~~~~GAR~L~r~Ie~~i~~~la~ 833 (852)
T TIGR03345 794 ELVYSEALVEHIVARCTEVESGARNIDAILNQTLLPELSR 833 (852)
T ss_pred eEEECHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHHHHH
Confidence 245688899999998754 66899999999877777665
No 165
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.27 E-value=1e-10 Score=108.39 Aligned_cols=139 Identities=20% Similarity=0.229 Sum_probs=95.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCc------------------------EEEEec--Cccchhh----hhhhh--
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSA--SSLTSKW----VGEGE-- 294 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~------------------------~~~v~~--~~l~~~~----~g~~~-- 294 (473)
..++.+|||||||+|||++|+++++.+... +..+.. ..+.... .....
T Consensus 12 ~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~~~~~~~~i~~i~~~~~~~ 91 (188)
T TIGR00678 12 RLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEGQSIKVDQVRELVEFLSRT 91 (188)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEeccccCcCCHHHHHHHHHHHccC
Confidence 345789999999999999999999987432 222221 1110001 11111
Q ss_pred --hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHH
Q 012000 295 --KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 295 --~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
..-+.++.||+++.. .....+.|+..|+. ++...++|.+|+.+..+.+++++|+. .+.+++|+.+
T Consensus 92 ~~~~~~kviiide~~~l--------~~~~~~~Ll~~le~----~~~~~~~il~~~~~~~l~~~i~sr~~-~~~~~~~~~~ 158 (188)
T TIGR00678 92 PQESGRRVVIIEDAERM--------NEAAANALLKTLEE----PPPNTLFILITPSPEKLLPTIRSRCQ-VLPFPPLSEE 158 (188)
T ss_pred cccCCeEEEEEechhhh--------CHHHHHHHHHHhcC----CCCCeEEEEEECChHhChHHHHhhcE-EeeCCCCCHH
Confidence 122457779998433 23345678887764 33446677778888999999999995 6999999999
Q ss_pred HHHHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 012000 373 VRRLLLKHKLKGQAFSLPGGDLERLVRETEGY 404 (473)
Q Consensus 373 ~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~ 404 (473)
+...++... + ++++.+..++..+.|.
T Consensus 159 ~~~~~l~~~----g--i~~~~~~~i~~~~~g~ 184 (188)
T TIGR00678 159 ALLQWLIRQ----G--ISEEAAELLLALAGGS 184 (188)
T ss_pred HHHHHHHHc----C--CCHHHHHHHHHHcCCC
Confidence 988888775 3 5688899999998874
No 166
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.27 E-value=1.5e-11 Score=113.83 Aligned_cols=137 Identities=26% Similarity=0.342 Sum_probs=71.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-------------------
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------------------- 274 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~------------------- 274 (473)
.|+||+|++.+|.+|.-+.. . .+++||+||||||||++|+++...+.
T Consensus 1 Df~dI~GQe~aKrAL~iAAa-----------G---~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~ 66 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA-----------G---GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGL 66 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH-----------C---C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---
T ss_pred ChhhhcCcHHHHHHHHHHHc-----------C---CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccC
Confidence 48899999999999987774 1 36999999999999999999998541
Q ss_pred ---------CcEEEEecCccch--------hhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC----
Q 012000 275 ---------ATFFNVSASSLTS--------KWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT---- 333 (473)
Q Consensus 275 ---------~~~~~v~~~~l~~--------~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~---- 333 (473)
.+|....-+.-.. -..|+....-+.|+++||+ ++..+.++..|+..|+.-.
T Consensus 67 ~~~~~~~~~~Pfr~phhs~s~~~liGgg~~~~PGeislAh~GVLflDE~--------~ef~~~vld~Lr~ple~g~v~i~ 138 (206)
T PF01078_consen 67 GPDEGLIRQRPFRAPHHSASEAALIGGGRPPRPGEISLAHRGVLFLDEL--------NEFDRSVLDALRQPLEDGEVTIS 138 (206)
T ss_dssp S---EEEE---EEEE-TT--HHHHHEEGGGEEE-CGGGGTTSEEEECET--------TTS-HHHHHHHHHHHHHSBEEEE
T ss_pred CCCCceecCCCcccCCCCcCHHHHhCCCcCCCcCHHHHhcCCEEEechh--------hhcCHHHHHHHHHHHHCCeEEEE
Confidence 1222221111111 1334455566789999999 6777888888888775321
Q ss_pred -----CCCCCcEEEEeecCCC-----------------------CCCCHHHhcccccccccCCCcHH
Q 012000 334 -----SNPNDLVIVMGATNKP-----------------------QELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 334 -----~~~~~~v~vI~tTn~~-----------------------~~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
...+.++++|+|+|.= ..|..+++.||+..+.++..+.+
T Consensus 139 R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~ 205 (206)
T PF01078_consen 139 RAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYE 205 (206)
T ss_dssp ETTEEEEEB--EEEEEEE-S-----------------------------------------------
T ss_pred ECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccC
Confidence 1123457899998751 13455666777777766665443
No 167
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.27 E-value=1.7e-10 Score=109.47 Aligned_cols=178 Identities=17% Similarity=0.255 Sum_probs=124.4
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-C--C--------
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-Q--A-------- 275 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-~--~-------- 275 (473)
+++++|.+++.+.+.++....|+.... ...-.|+|+|||+|+||-|.+.++-+++ | .
T Consensus 4 vdkyrpksl~~l~~~~e~~~~Lksl~~------------~~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~ 71 (351)
T KOG2035|consen 4 VDKYRPKSLDELIYHEELANLLKSLSS------------TGDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETR 71 (351)
T ss_pred hhhcCcchhhhcccHHHHHHHHHHhcc------------cCCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeE
Confidence 567899999999999999999987663 1112489999999999999999999876 1 1
Q ss_pred ------------------cEEEEecCccch--h-----h---hhhhhh------hhcceeeeeccccccccCcchHHHHH
Q 012000 276 ------------------TFFNVSASSLTS--K-----W---VGEGEK------LVRTLFMIDSIMSTRMANENDASRRL 321 (473)
Q Consensus 276 ------------------~~~~v~~~~l~~--~-----~---~g~~~~------~~~~if~IDei~~~~~~~~~~~~~~~ 321 (473)
..+++++++.-. . . ++++.. ..-.++.|.+. ++..+..
T Consensus 72 t~~tpS~kklEistvsS~yHlEitPSDaG~~DRvViQellKevAQt~qie~~~qr~fKvvvi~ea--------d~LT~dA 143 (351)
T KOG2035|consen 72 TFTTPSKKKLEISTVSSNYHLEITPSDAGNYDRVVIQELLKEVAQTQQIETQGQRPFKVVVINEA--------DELTRDA 143 (351)
T ss_pred EEecCCCceEEEEEecccceEEeChhhcCcccHHHHHHHHHHHHhhcchhhccccceEEEEEech--------HhhhHHH
Confidence 111222222100 0 0 000000 00012223333 3344555
Q ss_pred HHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc
Q 012000 322 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET 401 (473)
Q Consensus 322 ~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t 401 (473)
...|-.-|+.... .+.+|..+|....+-+++++||.. |.+|.|+.++...++...++++++.++.+.+..+|+.+
T Consensus 144 Q~aLRRTMEkYs~----~~RlIl~cns~SriIepIrSRCl~-iRvpaps~eeI~~vl~~v~~kE~l~lp~~~l~rIa~kS 218 (351)
T KOG2035|consen 144 QHALRRTMEKYSS----NCRLILVCNSTSRIIEPIRSRCLF-IRVPAPSDEEITSVLSKVLKKEGLQLPKELLKRIAEKS 218 (351)
T ss_pred HHHHHHHHHHHhc----CceEEEEecCcccchhHHhhheeE-EeCCCCCHHHHHHHHHHHHHHhcccCcHHHHHHHHHHh
Confidence 5566666665433 366788899999999999999965 89999999999999999999999999999999999999
Q ss_pred CCCCHHHH
Q 012000 402 EGYSGSDL 409 (473)
Q Consensus 402 ~g~s~~dL 409 (473)
.|--.+.|
T Consensus 219 ~~nLRrAl 226 (351)
T KOG2035|consen 219 NRNLRRAL 226 (351)
T ss_pred cccHHHHH
Confidence 88444443
No 168
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.26 E-value=1.4e-10 Score=130.35 Aligned_cols=199 Identities=18% Similarity=0.238 Sum_probs=134.9
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh--
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-- 288 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~-- 288 (473)
-.+.|+|++.+++.|.+.+...... ......|...+||+||||||||++|++||..+ +.+++.++++++...
T Consensus 566 l~~~viGQ~~ai~~l~~~i~~~~~g---l~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~ 642 (857)
T PRK10865 566 LHHRVIGQNEAVEAVSNAIRRSRAG---LSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHS 642 (857)
T ss_pred hCCeEeCCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhh
Confidence 3557899999999999988632110 00112333468999999999999999999986 457888888765332
Q ss_pred ---hh-------hhh-----hhh----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCc--CCC-----CCCcEEE
Q 012000 289 ---WV-------GEG-----EKL----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV--TSN-----PNDLVIV 342 (473)
Q Consensus 289 ---~~-------g~~-----~~~----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~--~~~-----~~~~v~v 342 (473)
.+ |.. ... -..++.||+++. .+....+.|+..++.- ... .-.+.+|
T Consensus 643 ~~~LiG~~pgy~g~~~~g~l~~~v~~~p~~vLllDEiek--------a~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~ii 714 (857)
T PRK10865 643 VSRLVGAPPGYVGYEEGGYLTEAVRRRPYSVILLDEVEK--------AHPDVFNILLQVLDDGRLTDGQGRTVDFRNTVV 714 (857)
T ss_pred HHHHhCCCCcccccchhHHHHHHHHhCCCCeEEEeehhh--------CCHHHHHHHHHHHhhCceecCCceEEeecccEE
Confidence 11 110 011 126888999943 3345667777776521 110 0134578
Q ss_pred EeecCCCC-------------------------CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc---------CCCC
Q 012000 343 MGATNKPQ-------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFS 388 (473)
Q Consensus 343 I~tTn~~~-------------------------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---------~~~~ 388 (473)
|+|||... .+.|+++.|++.++.|.+++.+....|+..++.. ..+.
T Consensus 715 I~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELlnRld~iivF~PL~~edl~~Iv~~~L~~l~~rl~~~gi~l~ 794 (857)
T PRK10865 715 IMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFINRIDEVVVFHPLGEQHIASIAQIQLQRLYKRLEERGYEIH 794 (857)
T ss_pred EEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHHhCCeeEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCcCc
Confidence 88998631 2457899999988999999999998888876643 2345
Q ss_pred CChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 389 LPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 389 l~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
+++..++.|+.... .|-.+.|+.+++.-+..++.+
T Consensus 795 is~~al~~L~~~gy~~~~GARpL~r~I~~~i~~~la~ 831 (857)
T PRK10865 795 ISDEALKLLSENGYDPVYGARPLKRAIQQQIENPLAQ 831 (857)
T ss_pred CCHHHHHHHHHcCCCccCChHHHHHHHHHHHHHHHHH
Confidence 68889999987532 345789999999887776654
No 169
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.26 E-value=1.2e-10 Score=130.95 Aligned_cols=197 Identities=22% Similarity=0.240 Sum_probs=136.3
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccch-----
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS----- 287 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~----- 287 (473)
+.|+|++++++.|...+..... .+....+|...+||+||||||||+||+++|+.+ ..+++.++++++..
T Consensus 509 ~~v~GQ~~ai~~l~~~i~~~~~---gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~ 585 (821)
T CHL00095 509 KRIIGQDEAVVAVSKAIRRARV---GLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVS 585 (821)
T ss_pred CcCcChHHHHHHHHHHHHHHhh---cccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHH
Confidence 4689999999999988853211 111123344568999999999999999999987 36788888776532
Q ss_pred h-------hhhhhh-----h----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-CC------CCCcEEEEe
Q 012000 288 K-------WVGEGE-----K----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-SN------PNDLVIVMG 344 (473)
Q Consensus 288 ~-------~~g~~~-----~----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-~~------~~~~v~vI~ 344 (473)
+ |+|..+ . .-..|+.||+++ ..+..+.+.|+..|+.-. .. .-.+.+||+
T Consensus 586 ~l~g~~~gyvg~~~~~~l~~~~~~~p~~VvllDeie--------ka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~ 657 (821)
T CHL00095 586 KLIGSPPGYVGYNEGGQLTEAVRKKPYTVVLFDEIE--------KAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIM 657 (821)
T ss_pred HhcCCCCcccCcCccchHHHHHHhCCCeEEEECChh--------hCCHHHHHHHHHHhccCceecCCCcEEecCceEEEE
Confidence 1 222111 1 112688899994 334567778888777321 00 124578899
Q ss_pred ecCCCCC-------------------------------------CCHHHhcccccccccCCCcHHHHHHHHHHHhcc---
Q 012000 345 ATNKPQE-------------------------------------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--- 384 (473)
Q Consensus 345 tTn~~~~-------------------------------------Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~--- 384 (473)
|||.... +.|.++.|++.++.|.+.+.++...|+...+.+
T Consensus 658 Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~l~~ 737 (821)
T CHL00095 658 TSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKNLFK 737 (821)
T ss_pred eCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHHHHH
Confidence 9875311 236788899999999999999999998876653
Q ss_pred ----C--CCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHH
Q 012000 385 ----Q--AFSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 385 ----~--~~~l~~~~l~~La~~--t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
. .+.+++..++.|++. ...|-++.|..+++.-...++.+
T Consensus 738 rl~~~~i~l~~~~~~~~~La~~~~~~~~GAR~l~r~i~~~i~~~l~~ 784 (821)
T CHL00095 738 RLNEQGIQLEVTERIKTLLIEEGYNPLYGARPLRRAIMRLLEDPLAE 784 (821)
T ss_pred HHHHCCcEEEECHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHH
Confidence 2 345688899999986 23566889999988877776654
No 170
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.25 E-value=6.7e-11 Score=119.42 Aligned_cols=144 Identities=27% Similarity=0.413 Sum_probs=101.7
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc------chhhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL------TSKWV 290 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l------~~~~~ 290 (473)
.++|.++++..+...+.. ..++||.||||||||+||+++|..++.+|+.+.+... ...+.
T Consensus 25 ~~~g~~~~~~~~l~a~~~--------------~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~ 90 (329)
T COG0714 25 VVVGDEEVIELALLALLA--------------GGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYA 90 (329)
T ss_pred eeeccHHHHHHHHHHHHc--------------CCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchh
Confidence 377888877777665531 3579999999999999999999999999999987633 22222
Q ss_pred hhhh------------hhhcc---eeeeeccccccccCcchHHHHHHHHHHHHhcC-------cC-CCCCCcEEEEeecC
Q 012000 291 GEGE------------KLVRT---LFMIDSIMSTRMANENDASRRLKSEFLIQFDG-------VT-SNPNDLVIVMGATN 347 (473)
Q Consensus 291 g~~~------------~~~~~---if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg-------~~-~~~~~~v~vI~tTn 347 (473)
-... ..... ++++||| +.....+.+.|+..|+. .. ..-+.+++||+|.|
T Consensus 91 ~~~~~~~~~~~~~~~gpl~~~~~~ill~DEI--------nra~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~N 162 (329)
T COG0714 91 YAALLLEPGEFRFVPGPLFAAVRVILLLDEI--------NRAPPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQN 162 (329)
T ss_pred HhhhhccCCeEEEecCCcccccceEEEEecc--------ccCCHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccC
Confidence 2221 01124 8889999 44445667777777764 22 22346689999999
Q ss_pred -----CCCCCCHHHhcccccccccCCC-cHHHHHHHHHHHh
Q 012000 348 -----KPQELDDAVLRRLVKRIYVPLP-DENVRRLLLKHKL 382 (473)
Q Consensus 348 -----~~~~Ld~al~rRf~~~i~~~~P-~~~~r~~il~~~l 382 (473)
....|++++++||...++++.| +..+...++....
T Consensus 163 p~e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~ 203 (329)
T COG0714 163 PGEYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVG 203 (329)
T ss_pred ccccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCc
Confidence 5567899999999888999999 4444544444433
No 171
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.25 E-value=1.1e-10 Score=101.94 Aligned_cols=128 Identities=41% Similarity=0.590 Sum_probs=85.5
Q ss_pred ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh----
Q 012000 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE---- 292 (473)
Q Consensus 220 Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~---- 292 (473)
|.+.+.+.+...+.. ....+++++||||||||++++.++..+ +.+++.+++..........
T Consensus 2 ~~~~~~~~i~~~~~~------------~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~ 69 (151)
T cd00009 2 GQEEAIEALREALEL------------PPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFG 69 (151)
T ss_pred chHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhh
Confidence 556666677666532 134689999999999999999999998 8889998887654433221
Q ss_pred ----------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC--CCCcEEEEeecCCCC--CCCHHHhc
Q 012000 293 ----------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN--PNDLVIVMGATNKPQ--ELDDAVLR 358 (473)
Q Consensus 293 ----------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~--~~~~v~vI~tTn~~~--~Ld~al~r 358 (473)
.......++.+||+... .......++..+...... ....+.+|+++|... .+++.+.+
T Consensus 70 ~~~~~~~~~~~~~~~~~~lilDe~~~~--------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~ 141 (151)
T cd00009 70 HFLVRLLFELAEKAKPGVLFIDEIDSL--------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYD 141 (151)
T ss_pred hhhHhHHHHhhccCCCeEEEEeChhhh--------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHh
Confidence 11122467789999433 122233444444433211 124578888888877 78899999
Q ss_pred ccccccccC
Q 012000 359 RLVKRIYVP 367 (473)
Q Consensus 359 Rf~~~i~~~ 367 (473)
||+.++.++
T Consensus 142 r~~~~i~~~ 150 (151)
T cd00009 142 RLDIRIVIP 150 (151)
T ss_pred hhccEeecC
Confidence 998777765
No 172
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.25 E-value=1.2e-10 Score=126.11 Aligned_cols=197 Identities=21% Similarity=0.293 Sum_probs=144.9
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCccchh----
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSK---- 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l~~~---- 288 (473)
..|+|++++...+...+.. .+..+....+|...+||.||+|+|||-||+++|..+. ..++.+++++++.+
T Consensus 491 ~rViGQd~AV~avs~aIrr---aRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~EkHsVS 567 (786)
T COG0542 491 KRVIGQDEAVEAVSDAIRR---ARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYMEKHSVS 567 (786)
T ss_pred cceeChHHHHHHHHHHHHH---HhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHHHHHHH
Confidence 4689999999999999863 2222233355666789999999999999999999986 78999999987553
Q ss_pred --------hhhhhh-----hhh----cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-CC------CcEEEEe
Q 012000 289 --------WVGEGE-----KLV----RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-PN------DLVIVMG 344 (473)
Q Consensus 289 --------~~g~~~-----~~~----~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-~~------~~v~vI~ 344 (473)
|+|-.+ ..+ .+|+.+||| ..++..+.+-||+.||.-.-. .. .+.++|+
T Consensus 568 rLIGaPPGYVGyeeGG~LTEaVRr~PySViLlDEI--------EKAHpdV~nilLQVlDdGrLTD~~Gr~VdFrNtiIIm 639 (786)
T COG0542 568 RLIGAPPGYVGYEEGGQLTEAVRRKPYSVILLDEI--------EKAHPDVFNLLLQVLDDGRLTDGQGRTVDFRNTIIIM 639 (786)
T ss_pred HHhCCCCCCceeccccchhHhhhcCCCeEEEechh--------hhcCHHHHHHHHHHhcCCeeecCCCCEEecceeEEEE
Confidence 333211 111 358889999 566778999999999743211 11 3578899
Q ss_pred ecCCCC----------------------------CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc---------CCC
Q 012000 345 ATNKPQ----------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAF 387 (473)
Q Consensus 345 tTn~~~----------------------------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---------~~~ 387 (473)
|+|--. .+.|+++.|++.+|.|...+.+...+|+...+.. ..+
T Consensus 640 TSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~~~~l~~Iv~~~L~~l~~~L~~~~i~l 719 (786)
T COG0542 640 TSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLSKEVLERIVDLQLNRLAKRLAERGITL 719 (786)
T ss_pred ecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCCHHHHHHHHHHHHHHHHHHHHhCCceE
Confidence 987421 1257888899999999999999999988876642 344
Q ss_pred CCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 388 SLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 388 ~l~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
.+++...+.|+.... .|-++-|..+++.-..-++.+
T Consensus 720 ~~s~~a~~~l~~~gyd~~~GARpL~R~Iq~~i~~~La~ 757 (786)
T COG0542 720 ELSDEAKDFLAEKGYDPEYGARPLRRAIQQEIEDPLAD 757 (786)
T ss_pred EECHHHHHHHHHhccCCCcCchHHHHHHHHHHHHHHHH
Confidence 568889999998755 567889999888876666554
No 173
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.21 E-value=1.3e-10 Score=116.57 Aligned_cols=141 Identities=23% Similarity=0.290 Sum_probs=99.8
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---------------------
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--------------------- 274 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~--------------------- 274 (473)
++++|.+.+...+..++.. ....++.+||+||||||||++|.++|+++.
T Consensus 1 ~~~~~~~~~~~~l~~~~~~----------~~~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~ 70 (325)
T COG0470 1 DELVPWQEAVKRLLVQALE----------SGRLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPA 70 (325)
T ss_pred CCcccchhHHHHHHHHHHh----------cCCCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhh
Confidence 3678888888888887752 122344699999999999999999999886
Q ss_pred ---CcEEEEecCccchh-----hhhhhhh--------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 275 ---ATFFNVSASSLTSK-----WVGEGEK--------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 275 ---~~~~~v~~~~l~~~-----~~g~~~~--------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
-.++.+++++.... .+.+... .-..++.||+++. ......+.++..+. .++.
T Consensus 71 ~~~~d~lel~~s~~~~~~i~~~~vr~~~~~~~~~~~~~~~kviiidead~--------mt~~A~nallk~lE----ep~~ 138 (325)
T COG0470 71 GNHPDFLELNPSDLRKIDIIVEQVRELAEFLSESPLEGGYKVVIIDEADK--------LTEDAANALLKTLE----EPPK 138 (325)
T ss_pred cCCCceEEecccccCCCcchHHHHHHHHHHhccCCCCCCceEEEeCcHHH--------HhHHHHHHHHHHhc----cCCC
Confidence 47788887765432 1111111 1235777899843 34456677887776 4456
Q ss_pred cEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHH
Q 012000 339 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLK 379 (473)
Q Consensus 339 ~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~ 379 (473)
...+|.+||.++.+-+.+++||.. +.|++|+...+....+
T Consensus 139 ~~~~il~~n~~~~il~tI~SRc~~-i~f~~~~~~~~i~~~e 178 (325)
T COG0470 139 NTRFILITNDPSKILPTIRSRCQR-IRFKPPSRLEAIAWLE 178 (325)
T ss_pred CeEEEEEcCChhhccchhhhccee-eecCCchHHHHHHHhh
Confidence 688999999999999999999976 7777765555544433
No 174
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.20 E-value=4.1e-10 Score=120.00 Aligned_cols=157 Identities=24% Similarity=0.275 Sum_probs=96.9
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhc-CCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE----ecCccchhh--
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTG-LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV----SASSLTSKW-- 289 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~-~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v----~~~~l~~~~-- 289 (473)
+|.|++.+|..|.-.+..-.. +....+ ......+|||+|+||||||++|+++++......+.. ++..+....
T Consensus 204 ~i~G~~~~k~~l~l~l~gg~~-~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~~ 282 (509)
T smart00350 204 SIYGHEDIKKAILLLLFGGVH-KNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVTR 282 (509)
T ss_pred cccCcHHHHHHHHHHHhCCCc-cccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccceE
Confidence 578999998888655532100 000000 011234799999999999999999999875433322 222221111
Q ss_pred ---hhh-------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcC---------cCCCCCCcEEEEeecCCCC
Q 012000 290 ---VGE-------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 290 ---~g~-------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg---------~~~~~~~~v~vI~tTn~~~ 350 (473)
.|+ ....-..++.|||++.. .......|+..|+. ....-+.++.||+|+|+.+
T Consensus 283 ~~~~g~~~~~~G~l~~A~~Gil~iDEi~~l--------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~NP~~ 354 (509)
T smart00350 283 DPETREFTLEGGALVLADNGVCCIDEFDKM--------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAANPIG 354 (509)
T ss_pred ccCcceEEecCccEEecCCCEEEEechhhC--------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeCCCC
Confidence 111 11122467779999443 33445555555532 2212235689999999763
Q ss_pred -------------CCCHHHhcccccc-cccCCCcHHHHHHHHHHHh
Q 012000 351 -------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKHKL 382 (473)
Q Consensus 351 -------------~Ld~al~rRf~~~-i~~~~P~~~~r~~il~~~l 382 (473)
.|++++++||+.. +..+.|+.+...+|.++.+
T Consensus 355 g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~ 400 (509)
T smart00350 355 GRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVV 400 (509)
T ss_pred cccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHH
Confidence 5899999999864 5668899999999888754
No 175
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.20 E-value=5e-10 Score=113.94 Aligned_cols=212 Identities=16% Similarity=0.208 Sum_probs=137.2
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-----EEEEecCccchhhh-
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-----FFNVSASSLTSKWV- 290 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-----~~~v~~~~l~~~~~- 290 (473)
.+.+.++..++|...+.-.+. ...|.++++|||||||||.+++.+++++... ++.|+|..+.+.+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~--------~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i 89 (366)
T COG1474 18 ELPHREEEINQLASFLAPALR--------GERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQV 89 (366)
T ss_pred cccccHHHHHHHHHHHHHHhc--------CCCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHH
Confidence 388999999999888643222 2234569999999999999999999988443 78888875533210
Q ss_pred -----h---------h-------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEE
Q 012000 291 -----G---------E-------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 343 (473)
Q Consensus 291 -----g---------~-------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI 343 (473)
. . ......-++.+||++....... ..+-.|+.... ....+|.+|
T Consensus 90 ~~~i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~-----~~LY~L~r~~~----~~~~~v~vi 160 (366)
T COG1474 90 LSKILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG-----EVLYSLLRAPG----ENKVKVSII 160 (366)
T ss_pred HHHHHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc-----hHHHHHHhhcc----ccceeEEEE
Confidence 0 0 0001123555899976554332 22333332222 224568999
Q ss_pred eecCCCC---CCCHHHhcccc-cccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHH---cCCCCHHHHHHHHH
Q 012000 344 GATNKPQ---ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRE---TEGYSGSDLQALCE 414 (473)
Q Consensus 344 ~tTn~~~---~Ld~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~---t~g~s~~dL~~l~~ 414 (473)
+.+|..+ .+|+.+.++|. ..|.||+.+.++...|+...... ....+++..++.+|.. ..| ..+-.-.+|+
T Consensus 161 ~i~n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~G-DAR~aidilr 239 (366)
T COG1474 161 AVSNDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESG-DARKAIDILR 239 (366)
T ss_pred EEeccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCc-cHHHHHHHHH
Confidence 9998875 67899999876 55899999999999999987763 2333466666665543 344 4555556888
Q ss_pred HHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 415 EAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 415 ~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
.|+..|-++.. +.++.++..+|...+.+....
T Consensus 240 ~A~eiAe~~~~-----------~~v~~~~v~~a~~~~~~~~~~ 271 (366)
T COG1474 240 RAGEIAEREGS-----------RKVSEDHVREAQEEIERDVLE 271 (366)
T ss_pred HHHHHHHhhCC-----------CCcCHHHHHHHHHHhhHHHHH
Confidence 88888866532 346666666665544443333
No 176
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.20 E-value=3.1e-10 Score=114.46 Aligned_cols=143 Identities=15% Similarity=0.190 Sum_probs=100.0
Q ss_pred CcccccC-hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc----------------
Q 012000 214 KWEDVAG-LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---------------- 276 (473)
Q Consensus 214 ~~~divG-l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---------------- 276 (473)
.|+.|+| ++.+++.|+..+. ....++.+|||||+|+||+++|+++|+.+.+.
T Consensus 3 ~~~~i~~~q~~~~~~L~~~~~-----------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~ 71 (329)
T PRK08058 3 TWEQLTALQPVVVKMLQNSIA-----------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKR 71 (329)
T ss_pred cHHHHHhhHHHHHHHHHHHHH-----------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHH
Confidence 5899999 8889999998874 33456789999999999999999999986321
Q ss_pred --------EEEEec--Cccchhhhhh--------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 277 --------FFNVSA--SSLTSKWVGE--------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 277 --------~~~v~~--~~l~~~~~g~--------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
+..+.. ..+.-.-+-+ .-..-+.++.||++ +.......+.||+.++ .+++
T Consensus 72 ~~~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a--------~~~~~~a~NaLLK~LE----EPp~ 139 (329)
T PRK08058 72 IDSGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHA--------DKMTASAANSLLKFLE----EPSG 139 (329)
T ss_pred HhcCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehH--------hhhCHHHHHHHHHHhc----CCCC
Confidence 222211 1110000000 00112457778887 3334456778888887 4566
Q ss_pred cEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHH
Q 012000 339 LVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKH 380 (473)
Q Consensus 339 ~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~ 380 (473)
.+++|.+|+.+..|.+.+++||.. ++|+.|+.++....+..
T Consensus 140 ~~~~Il~t~~~~~ll~TIrSRc~~-i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 140 GTTAILLTENKHQILPTILSRCQV-VEFRPLPPESLIQRLQE 180 (329)
T ss_pred CceEEEEeCChHhCcHHHHhhcee-eeCCCCCHHHHHHHHHH
Confidence 688888998999999999999965 88988888887666653
No 177
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.19 E-value=2.4e-10 Score=114.43 Aligned_cols=63 Identities=24% Similarity=0.398 Sum_probs=50.2
Q ss_pred Ccc-cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-------cEEEEec
Q 012000 214 KWE-DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-------TFFNVSA 282 (473)
Q Consensus 214 ~~~-divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~-------~~~~v~~ 282 (473)
-|+ ++.|+++++.+|.+++.... .+.....+.++|+||||||||+||++||+.++. +++.+..
T Consensus 48 ~F~~~~~G~~~~i~~lv~~l~~~a------~g~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 48 FFDHDFFGMEEAIERFVNYFKSAA------QGLEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred ccchhccCcHHHHHHHHHHHHHHH------hcCCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 455 89999999999998886432 222334567899999999999999999999865 7887766
No 178
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.18 E-value=2.9e-10 Score=122.18 Aligned_cols=193 Identities=20% Similarity=0.235 Sum_probs=125.7
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
.+..++++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+.
T Consensus 190 ~~~~~~~~liG~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~ 259 (534)
T TIGR01817 190 RRSGKEDGIIGKSPAMRQVVDQARVV----------ARSNSTVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALS 259 (534)
T ss_pred cccCccCceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCC
Confidence 45578999999999888888877532 2234579999999999999999998875 5799999998764
Q ss_pred hhhh-----hh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-------CCCc
Q 012000 287 SKWV-----GE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PNDL 339 (473)
Q Consensus 287 ~~~~-----g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-------~~~~ 339 (473)
..++ |. .+..-...++||+++. ........|+..++.-... ..-.
T Consensus 260 ~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~--------L~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~ 331 (534)
T TIGR01817 260 ETLLESELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGE--------ISPAFQAKLLRVLQEGEFERVGGNRTLKVD 331 (534)
T ss_pred HHHHHHHHcCCCCCccCCCCcCCCCcccccCCCeEEEechhh--------CCHHHHHHHHHHHhcCcEEECCCCceEeec
Confidence 3321 11 1112235677999943 3344555666655432100 0123
Q ss_pred EEEEeecCCC-------CCCCHHHhccccc-ccccCCCc--HHHHHHHHHHHhcc------CCCCCChhhHHHHHHHcCC
Q 012000 340 VIVMGATNKP-------QELDDAVLRRLVK-RIYVPLPD--ENVRRLLLKHKLKG------QAFSLPGGDLERLVRETEG 403 (473)
Q Consensus 340 v~vI~tTn~~-------~~Ld~al~rRf~~-~i~~~~P~--~~~r~~il~~~l~~------~~~~l~~~~l~~La~~t~g 403 (473)
+.+|++|+.. ..+.+.|..|+.. .|.+|+.. .+....|+.+++.. ....++++.+..|......
T Consensus 332 ~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~~~WP 411 (534)
T TIGR01817 332 VRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENGRPLTITPSAIRVLMSCKWP 411 (534)
T ss_pred EEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhCCCC
Confidence 7888888753 2344555556643 34454432 23344555555542 1256788899999988655
Q ss_pred CCHHHHHHHHHHHHHHh
Q 012000 404 YSGSDLQALCEEAAMMP 420 (473)
Q Consensus 404 ~s~~dL~~l~~~A~~~a 420 (473)
-+.++|.++++.|+..+
T Consensus 412 GNvrEL~~v~~~a~~~~ 428 (534)
T TIGR01817 412 GNVRELENCLERTATLS 428 (534)
T ss_pred ChHHHHHHHHHHHHHhC
Confidence 58899999999987653
No 179
>PHA02244 ATPase-like protein
Probab=99.18 E-value=1.4e-10 Score=116.10 Aligned_cols=112 Identities=21% Similarity=0.242 Sum_probs=74.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc----cchhhhh---hhh-------hhhcceeeeeccccccccCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS----LTSKWVG---EGE-------KLVRTLFMIDSIMSTRMANE 314 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~----l~~~~~g---~~~-------~~~~~if~IDei~~~~~~~~ 314 (473)
..++||+||||||||+||+++|..++.+|+.++... +.. ++. ... ..-..+++|||+.....
T Consensus 119 ~~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G-~i~~~g~~~dgpLl~A~~~GgvLiLDEId~a~p--- 194 (383)
T PHA02244 119 NIPVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKG-FIDANGKFHETPFYEAFKKGGLFFIDEIDASIP--- 194 (383)
T ss_pred CCCEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcc-cccccccccchHHHHHhhcCCEEEEeCcCcCCH---
Confidence 356999999999999999999999999999887421 110 000 000 12236888999954432
Q ss_pred chHHHHHHHHHHHHhc--------CcCCCCCCcEEEEeecCCC-----------CCCCHHHhcccccccccCCCcH
Q 012000 315 NDASRRLKSEFLIQFD--------GVTSNPNDLVIVMGATNKP-----------QELDDAVLRRLVKRIYVPLPDE 371 (473)
Q Consensus 315 ~~~~~~~~~~ll~~ld--------g~~~~~~~~v~vI~tTn~~-----------~~Ld~al~rRf~~~i~~~~P~~ 371 (473)
.....|...++ +.. ....++.+|+|+|.+ ..|++++++||.. |+++.|+.
T Consensus 195 -----~vq~~L~~lLd~r~l~l~g~~i-~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRFv~-I~~dyp~~ 263 (383)
T PHA02244 195 -----EALIIINSAIANKFFDFADERV-TAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRFAP-IEFDYDEK 263 (383)
T ss_pred -----HHHHHHHHHhccCeEEecCcEE-ecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhcEE-eeCCCCcH
Confidence 22233333332 221 123458999999973 5689999999964 89999984
No 180
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.17 E-value=2.3e-09 Score=111.11 Aligned_cols=142 Identities=17% Similarity=0.259 Sum_probs=89.7
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC--cEEEEe-----cCccchhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVS-----ASSLTSKW 289 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--~~~~v~-----~~~l~~~~ 289 (473)
.|+|.+++++.+...+. ...++||+||||||||++|++++..++. +|..+. +.++++..
T Consensus 21 ~i~gre~vI~lll~aal--------------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l 86 (498)
T PRK13531 21 GLYERSHAIRLCLLAAL--------------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPL 86 (498)
T ss_pred hccCcHHHHHHHHHHHc--------------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcH
Confidence 57888998888876663 1357999999999999999999997643 333222 22332211
Q ss_pred -------hhhhhhh------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-------CCCCCcEEEEeecCCC
Q 012000 290 -------VGEGEKL------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVIVMGATNKP 349 (473)
Q Consensus 290 -------~g~~~~~------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-------~~~~~~v~vI~tTn~~ 349 (473)
-|..... ...++++||| +.......+.||..|..-. ..-+.++ +++|||..
T Consensus 87 ~i~~~~~~g~f~r~~~G~L~~A~lLfLDEI--------~rasp~~QsaLLeam~Er~~t~g~~~~~lp~rf-iv~ATN~L 157 (498)
T PRK13531 87 SIQALKDEGRYQRLTSGYLPEAEIVFLDEI--------WKAGPAILNTLLTAINERRFRNGAHEEKIPMRL-LVTASNEL 157 (498)
T ss_pred HHhhhhhcCchhhhcCCccccccEEeeccc--------ccCCHHHHHHHHHHHHhCeEecCCeEEeCCCcE-EEEECCCC
Confidence 0111111 1246789999 4556677888888883221 1112234 44455643
Q ss_pred CC---CCHHHhcccccccccCCCc-HHHHHHHHHHH
Q 012000 350 QE---LDDAVLRRLVKRIYVPLPD-ENVRRLLLKHK 381 (473)
Q Consensus 350 ~~---Ld~al~rRf~~~i~~~~P~-~~~r~~il~~~ 381 (473)
.. ..+++..||..++.+|+|+ .++...|+...
T Consensus 158 PE~g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~ 193 (498)
T PRK13531 158 PEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQ 193 (498)
T ss_pred cccCCchHHhHhhEEEEEECCCCCchHHHHHHHHcc
Confidence 22 3359999999889999997 45557777653
No 181
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.16 E-value=6.2e-11 Score=101.17 Aligned_cols=103 Identities=29% Similarity=0.387 Sum_probs=61.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC-ccch-hhhhhh-------------hhhhcceeeeeccccccccCcc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSAS-SLTS-KWVGEG-------------EKLVRTLFMIDSIMSTRMANEN 315 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~-~l~~-~~~g~~-------------~~~~~~if~IDei~~~~~~~~~ 315 (473)
|+||+|+||+|||++|+++|..++..|..|.+. ++.. +..|.. ......++.+||| +
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEi--------N 72 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEI--------N 72 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETG--------G
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeeccc--------c
Confidence 699999999999999999999999999988764 3321 111110 1122467789999 6
Q ss_pred hHHHHHHHHHHHHhcCc-------CCCCCCcEEEEeecCCCC-----CCCHHHhcccc
Q 012000 316 DASRRLKSEFLIQFDGV-------TSNPNDLVIVMGATNKPQ-----ELDDAVLRRLV 361 (473)
Q Consensus 316 ~~~~~~~~~ll~~ldg~-------~~~~~~~v~vI~tTn~~~-----~Ld~al~rRf~ 361 (473)
....+..+.+|..|... ...-+++++||+|-|+.+ .|+++++.||.
T Consensus 73 rappktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF~ 130 (131)
T PF07726_consen 73 RAPPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRFM 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTSS
T ss_pred cCCHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhcccc
Confidence 66677888888887532 222346689999999876 78999999984
No 182
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.16 E-value=1.2e-10 Score=102.41 Aligned_cols=102 Identities=29% Similarity=0.441 Sum_probs=68.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch------hhh---hhhh---------hhhcceeeeecccccccc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS------KWV---GEGE---------KLVRTLFMIDSIMSTRMA 312 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~------~~~---g~~~---------~~~~~if~IDei~~~~~~ 312 (473)
+|||+||||||||+||+.+|..++.+++.+.+..... .|. +... ..-..++.|||+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~~~~~il~lDEi------ 74 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAMRKGGILVLDEI------ 74 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTHHEEEEEEESSC------
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccccceeEEEECCc------
Confidence 5899999999999999999999999999888764322 111 0100 112467779999
Q ss_pred CcchHHHHHHHHHHHHhcCcCCC----------CCC-----cEEEEeecCCCC----CCCHHHhccc
Q 012000 313 NENDASRRLKSEFLIQFDGVTSN----------PND-----LVIVMGATNKPQ----ELDDAVLRRL 360 (473)
Q Consensus 313 ~~~~~~~~~~~~ll~~ldg~~~~----------~~~-----~v~vI~tTn~~~----~Ld~al~rRf 360 (473)
+.....+...|+..++.-... ... .+.+|+|+|... .+++++++||
T Consensus 75 --n~a~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 75 --NRAPPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp --GG--HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred --ccCCHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 444455666666666532110 111 389999999999 8999999998
No 183
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.13 E-value=8.4e-10 Score=111.18 Aligned_cols=184 Identities=20% Similarity=0.200 Sum_probs=116.6
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhh----
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV---- 290 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~---- 290 (473)
++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.|+|..+....+
T Consensus 1 liG~S~~m~~~~~~~~~~----------a~~~~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~~~l 70 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRL----------APLDRPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLDSEL 70 (329)
T ss_pred CCcCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHHHHH
Confidence 456666666666666421 2224579999999999999999997654 47999999986643322
Q ss_pred -hh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-------CCCCCcEEEEeecC
Q 012000 291 -GE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVIVMGATN 347 (473)
Q Consensus 291 -g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-------~~~~~~v~vI~tTn 347 (473)
|. .+..-...++||+++. ....+...|+..++.-. ......+.+|++|+
T Consensus 71 fG~~~g~~~ga~~~~~G~~~~a~gGtL~Ldei~~--------L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~at~ 142 (329)
T TIGR02974 71 FGHEAGAFTGAQKRHQGRFERADGGTLFLDELAT--------ASLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVCATN 142 (329)
T ss_pred hccccccccCcccccCCchhhCCCCEEEeCChHh--------CCHHHHHHHHHHHHcCcEEecCCCceeccceEEEEech
Confidence 11 1222345677999943 34445556666554221 01123478888887
Q ss_pred CC-------CCCCHHHhcccccccccCCCcHHHH----HHHHHHHhcc----C--C--CCCChhhHHHHHHHcCCCCHHH
Q 012000 348 KP-------QELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLKG----Q--A--FSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 348 ~~-------~~Ld~al~rRf~~~i~~~~P~~~~r----~~il~~~l~~----~--~--~~l~~~~l~~La~~t~g~s~~d 408 (473)
.. ..+.+.|..||.. +.+..|...+| ..|+.+++.. . . ..++++.+..|.....--+.++
T Consensus 143 ~~l~~~~~~g~fr~dL~~rl~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~ls~~a~~~L~~y~WPGNvrE 221 (329)
T TIGR02974 143 ADLPALAAEGRFRADLLDRLAF-DVITLPPLRERQEDIMLLAEHFAIRMARELGLPLFPGFTPQAREQLLEYHWPGNVRE 221 (329)
T ss_pred hhHHHHhhcCchHHHHHHHhcc-hhcCCCchhhhhhhHHHHHHHHHHHHHHHhCCCCCCCcCHHHHHHHHhCCCCchHHH
Confidence 53 2345677778753 34444544444 4455554432 1 2 3578889999988876558899
Q ss_pred HHHHHHHHHHHh
Q 012000 409 LQALCEEAAMMP 420 (473)
Q Consensus 409 L~~l~~~A~~~a 420 (473)
|.++++.++..+
T Consensus 222 L~n~i~~~~~~~ 233 (329)
T TIGR02974 222 LKNVVERSVYRH 233 (329)
T ss_pred HHHHHHHHHHhC
Confidence 999999987764
No 184
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.12 E-value=1.7e-09 Score=116.95 Aligned_cols=183 Identities=17% Similarity=0.251 Sum_probs=113.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC--cEEEEecCccchhhhhhh------------------hhhhcceeeeeccccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSLTSKWVGEG------------------EKLVRTLFMIDSIMST 309 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~--~~~~v~~~~l~~~~~g~~------------------~~~~~~if~IDei~~~ 309 (473)
.||||.|+||||||++|++++..+.. +|+.+.........+|.. ...-..+++||++
T Consensus 17 g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi--- 93 (589)
T TIGR02031 17 GGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMA--- 93 (589)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccch---
Confidence 58999999999999999999998754 588776432222222210 1111247789999
Q ss_pred cccCcchHHHHHHHHHHHHhcC---------cCCCCCCcEEEEeecCCCC---CCCHHHhcccccccccC-CCcHHHHHH
Q 012000 310 RMANENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKPQ---ELDDAVLRRLVKRIYVP-LPDENVRRL 376 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~ll~~ldg---------~~~~~~~~v~vI~tTn~~~---~Ld~al~rRf~~~i~~~-~P~~~~r~~ 376 (473)
+.....+...|+..|+. .....+..+.||+|+|..+ .|.++++.||..++.+. .|+..+|.+
T Consensus 94 -----~rl~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er~e 168 (589)
T TIGR02031 94 -----NLLDDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLRVE 168 (589)
T ss_pred -----hhCCHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHHHH
Confidence 44555677777777752 2222234688999999875 79999999999877555 457778888
Q ss_pred HHHHHhcc-----------------------CCCCCChhhHHHHHHHcC--CCC-HHHHHHHHHHHHHHhHHHhcccccc
Q 012000 377 LLKHKLKG-----------------------QAFSLPGGDLERLVRETE--GYS-GSDLQALCEEAAMMPIRELGTNILT 430 (473)
Q Consensus 377 il~~~l~~-----------------------~~~~l~~~~l~~La~~t~--g~s-~~dL~~l~~~A~~~a~~~~~~~~~~ 430 (473)
|++.++.. ..+.+++..+..|+..+- |.+ .+.-..+++.|...|.-+
T Consensus 169 il~~~~~~~~~~~~~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~------- 241 (589)
T TIGR02031 169 IVRRERCNEVFRMNDELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALH------- 241 (589)
T ss_pred HHHHHHHhhhhhcchhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHh-------
Confidence 88776521 123445555555555432 222 222223344343333222
Q ss_pred cccccCCCCcHHHHHHHHHhh
Q 012000 431 VKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 431 ~~~~~~~~it~~df~~al~~~ 451 (473)
+...++.+|+..|+.-+
T Consensus 242 ----gr~~V~~~Dv~~a~~lv 258 (589)
T TIGR02031 242 ----GRTEVTEEDLKLAVELV 258 (589)
T ss_pred ----CCCCCCHHHHHHHHHHH
Confidence 23568888888887654
No 185
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.12 E-value=9.7e-10 Score=109.25 Aligned_cols=73 Identities=23% Similarity=0.215 Sum_probs=49.3
Q ss_pred EEEeecCC------------CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 012000 341 IVMGATNK------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 341 ~vI~tTn~------------~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
+||.+||+ |+-++..|++|+. +|...+++.++..+|++..++.+++.++++.++.|+......|-+-
T Consensus 309 iiIlATNRg~~~irGt~~~sphGiP~DlLDRll-II~t~py~~~ei~~Il~iR~~~E~v~i~~~al~~L~~ig~~~SLRY 387 (398)
T PF06068_consen 309 IIILATNRGITKIRGTDIISPHGIPLDLLDRLL-IIRTKPYSEEEIKQILKIRAKEEDVEISEDALDLLTKIGVETSLRY 387 (398)
T ss_dssp EEEEEES-SEEE-BTTS-EEETT--HHHHTTEE-EEEE----HHHHHHHHHHHHHHCT--B-HHHHHHHHHHHHHS-HHH
T ss_pred EEEEecCceeeeccCccCcCCCCCCcchHhhcE-EEECCCCCHHHHHHHHHhhhhhhcCcCCHHHHHHHHHHhhhccHHH
Confidence 56667773 6778999999995 4888899999999999999999999999999999988766555554
Q ss_pred HHHHHH
Q 012000 409 LQALCE 414 (473)
Q Consensus 409 L~~l~~ 414 (473)
--+|+.
T Consensus 388 AiqLi~ 393 (398)
T PF06068_consen 388 AIQLIT 393 (398)
T ss_dssp HHHCHH
T ss_pred HHHhhh
Confidence 444443
No 186
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.11 E-value=8.1e-10 Score=106.97 Aligned_cols=176 Identities=16% Similarity=0.109 Sum_probs=120.2
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc------EE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------FF 278 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~------~~ 278 (473)
..++++++-.++|+++++++...+.++.. .... .++|+|||||||||+...+.|..+-.+ +.
T Consensus 30 pwvekyrP~~l~dv~~~~ei~st~~~~~~-----------~~~l-Ph~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~l 97 (360)
T KOG0990|consen 30 PWVEKYRPPFLGIVIKQEPIWSTENRYSG-----------MPGL-PHLLFYGPPGTGKTSTILANARDFYSPHPTTSMLL 97 (360)
T ss_pred CCccCCCCchhhhHhcCCchhhHHHHhcc-----------CCCC-CcccccCCCCCCCCCchhhhhhhhcCCCCchhHHH
Confidence 56788999999999999999999988853 2222 289999999999999999999987542 12
Q ss_pred EEecCccchh--------hhhhhhh-------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEE
Q 012000 279 NVSASSLTSK--------WVGEGEK-------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 343 (473)
Q Consensus 279 ~v~~~~l~~~--------~~g~~~~-------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI 343 (473)
.+++++-... .+..+.. .--.++.+||.+.+. +...+.|-..+.... .++.++
T Consensus 98 elnaSd~rgid~vr~qi~~fast~~~~~fst~~~fKlvILDEADaMT--------~~AQnALRRviek~t----~n~rF~ 165 (360)
T KOG0990|consen 98 ELNASDDRGIDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAMT--------RDAQNALRRVIEKYT----ANTRFA 165 (360)
T ss_pred HhhccCccCCcchHHHHHHHHhhccceeccccCceeEEEecchhHhh--------HHHHHHHHHHHHHhc----cceEEE
Confidence 2233321110 0000110 012345588884433 333444444444332 335566
Q ss_pred eecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC
Q 012000 344 GATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 344 ~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s 405 (473)
..+|++..+.|++++||.+ +.+...+...-...+.+++.......+.+....++...-|..
T Consensus 166 ii~n~~~ki~pa~qsRctr-frf~pl~~~~~~~r~shi~e~e~~~~~~~~~~a~~r~s~gDm 226 (360)
T KOG0990|consen 166 TISNPPQKIHPAQQSRCTR-FRFAPLTMAQQTERQSHIRESEQKETNPEGYSALGRLSVGDM 226 (360)
T ss_pred EeccChhhcCchhhccccc-CCCCCCChhhhhhHHHHHHhcchhhcCHHHHHHHHHHhHHHH
Confidence 6789999999999999987 677777777778888899888888878887777877776633
No 187
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.10 E-value=1.7e-09 Score=108.74 Aligned_cols=144 Identities=19% Similarity=0.260 Sum_probs=98.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCC------------------------cEEEEecCccc-hhhhhhhhh-----
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQA------------------------TFFNVSASSLT-SKWVGEGEK----- 295 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~------------------------~~~~v~~~~l~-~~~~g~~~~----- 295 (473)
.+.++++||+||+|+|||++|+++|+.+.+ .++.+.+..-. .-.+.+.+.
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~l~~~~ 98 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRELVSFV 98 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHHHHHHH
Confidence 445678999999999999999999998743 23333221100 000111111
Q ss_pred ------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCC
Q 012000 296 ------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 296 ------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P 369 (473)
.-+.|+.||+.+ .......+.||+.++ .++.++++|.+|+.+..|.+.+++||.. +.|++|
T Consensus 99 ~~~~~~~~~kv~iI~~a~--------~m~~~aaNaLLK~LE----EPp~~~~fiL~t~~~~~ll~TI~SRc~~-~~~~~~ 165 (328)
T PRK05707 99 VQTAQLGGRKVVLIEPAE--------AMNRNAANALLKSLE----EPSGDTVLLLISHQPSRLLPTIKSRCQQ-QACPLP 165 (328)
T ss_pred hhccccCCCeEEEECChh--------hCCHHHHHHHHHHHh----CCCCCeEEEEEECChhhCcHHHHhhcee-eeCCCc
Confidence 123566788883 334456788888887 4556688999999999999999999977 899999
Q ss_pred cHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCH
Q 012000 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSG 406 (473)
Q Consensus 370 ~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~ 406 (473)
+.++....+..... ...+.....++..+.|-.+
T Consensus 166 ~~~~~~~~L~~~~~----~~~~~~~~~~l~la~Gsp~ 198 (328)
T PRK05707 166 SNEESLQWLQQALP----ESDERERIELLTLAGGSPL 198 (328)
T ss_pred CHHHHHHHHHHhcc----cCChHHHHHHHHHcCCCHH
Confidence 99888877775432 1245566677777777433
No 188
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.08 E-value=2.4e-09 Score=107.89 Aligned_cols=188 Identities=19% Similarity=0.185 Sum_probs=122.2
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh--
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-- 288 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~-- 288 (473)
.+++++|.....+.+.+.+... ......|||+|++||||+++|++|-... +.+|+.++|..+...
T Consensus 4 ~~~~liG~S~~~~~~~~~i~~~----------a~~~~pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~~~ 73 (326)
T PRK11608 4 YKDNLLGEANSFLEVLEQVSRL----------APLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENLL 73 (326)
T ss_pred ccCccEECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHHHH
Confidence 4678999998888888877532 2224579999999999999999997654 479999999876322
Q ss_pred ---hhhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-------CCCcEEEE
Q 012000 289 ---WVGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PNDLVIVM 343 (473)
Q Consensus 289 ---~~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-------~~~~v~vI 343 (473)
++|. .+..-...++||+++ .........|+..++.-... ....+.||
T Consensus 74 ~~~lfg~~~~~~~g~~~~~~g~l~~a~gGtL~l~~i~--------~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI 145 (326)
T PRK11608 74 DSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELA--------TAPMLVQEKLLRVIEYGELERVGGSQPLQVNVRLV 145 (326)
T ss_pred HHHHccccccccCCcccccCCchhccCCCeEEeCChh--------hCCHHHHHHHHHHHhcCcEEeCCCCceeeccEEEE
Confidence 2221 122224566788883 33444556666655432100 11247888
Q ss_pred eecCCC-------CCCCHHHhcccccccccCCCcHHHH----HHHHHHHhc----cCC----CCCChhhHHHHHHHcCCC
Q 012000 344 GATNKP-------QELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLK----GQA----FSLPGGDLERLVRETEGY 404 (473)
Q Consensus 344 ~tTn~~-------~~Ld~al~rRf~~~i~~~~P~~~~r----~~il~~~l~----~~~----~~l~~~~l~~La~~t~g~ 404 (473)
++|+.. ..+.+.+..||.. +.+.+|...+| ..|+.+++. ..+ ..++++.+..|.....--
T Consensus 146 ~~s~~~l~~l~~~g~f~~dL~~~l~~-~~i~lPpLReR~eDI~~L~~~fl~~~~~~~~~~~~~~~s~~al~~L~~y~WPG 224 (326)
T PRK11608 146 CATNADLPAMVAEGKFRADLLDRLAF-DVVQLPPLRERQSDIMLMAEHFAIQMCRELGLPLFPGFTERARETLLNYRWPG 224 (326)
T ss_pred EeCchhHHHHHHcCCchHHHHHhcCC-CEEECCChhhhhhhHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHhCCCCc
Confidence 888763 3456777778853 34445555444 345555442 222 246788889998876655
Q ss_pred CHHHHHHHHHHHHHHh
Q 012000 405 SGSDLQALCEEAAMMP 420 (473)
Q Consensus 405 s~~dL~~l~~~A~~~a 420 (473)
+-++|+++++.|+..+
T Consensus 225 NvrEL~~vl~~a~~~~ 240 (326)
T PRK11608 225 NIRELKNVVERSVYRH 240 (326)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 8899999999987653
No 189
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.08 E-value=6.9e-10 Score=119.58 Aligned_cols=188 Identities=14% Similarity=0.172 Sum_probs=112.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEE-EecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~-v~~~ 283 (473)
..+++++|.+++||+|++..++.|+.++..... ...+.+.++|+||||||||++++.+|++++..+++ +++.
T Consensus 73 pW~eKyrP~~ldel~~~~~ki~~l~~~l~~~~~-------~~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv 145 (637)
T TIGR00602 73 PWVEKYKPETQHELAVHKKKIEEVETWLKAQVL-------ENAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPT 145 (637)
T ss_pred chHHHhCCCCHHHhcCcHHHHHHHHHHHHhccc-------ccCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhh
Confidence 356788999999999999999999988752111 11233459999999999999999999988755432 1110
Q ss_pred --------------------------ccchhhhhhhh----------hhhcceeeeeccccccccCcchHHHHHHHHHHH
Q 012000 284 --------------------------SLTSKWVGEGE----------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLI 327 (473)
Q Consensus 284 --------------------------~l~~~~~g~~~----------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~ 327 (473)
+.+..+..... ..-+.|++|||+...... ....+..+|.
T Consensus 146 ~~~~~~~~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r-----~~~~lq~lLr 220 (637)
T TIGR00602 146 LPDFQKNDHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYR-----DTRALHEILR 220 (637)
T ss_pred hhcccccccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchh-----hHHHHHHHHH
Confidence 00111122111 123458889999543321 1112333333
Q ss_pred -HhcCcCCCCCCcEEEEeecC-CCC----------C----CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCC-
Q 012000 328 -QFDGVTSNPNDLVIVMGATN-KPQ----------E----LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFS- 388 (473)
Q Consensus 328 -~ldg~~~~~~~~v~vI~tTn-~~~----------~----Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~- 388 (473)
... . ...+.+|++++ .+. . |.+++++ |+ .+|.|.+.........|...+..++..
T Consensus 221 ~~~~----e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~ 294 (637)
T TIGR00602 221 WKYV----S-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKN 294 (637)
T ss_pred HHhh----c-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhcc
Confidence 111 1 11233333332 221 1 3478886 44 358999999999888888777754321
Q ss_pred -----C-ChhhHHHHHHHcCCCCHHHHH
Q 012000 389 -----L-PGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 389 -----l-~~~~l~~La~~t~g~s~~dL~ 410 (473)
+ +++.+..|+..+.|.-++.|.
T Consensus 295 ~~~~~~p~~~~l~~I~~~s~GDiRsAIn 322 (637)
T TIGR00602 295 GEKIKVPKKTSVELLCQGCSGDIRSAIN 322 (637)
T ss_pred ccccccCCHHHHHHHHHhCCChHHHHHH
Confidence 1 356888999888884444443
No 190
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.07 E-value=7.7e-09 Score=101.13 Aligned_cols=86 Identities=17% Similarity=0.302 Sum_probs=70.7
Q ss_pred HHhcccccccccCCCcHHHHHHHHHHHhccCC----CCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccc
Q 012000 355 AVLRRLVKRIYVPLPDENVRRLLLKHKLKGQA----FSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430 (473)
Q Consensus 355 al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~----~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~ 430 (473)
.+.+|+...+.+++.+.++...++...+...+ ..++++.++.|.+.+.|. ++.|..+|..+...+..+
T Consensus 178 ~l~~r~~~~~~l~~l~~~e~~~~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~------- 249 (269)
T TIGR03015 178 QLRQRIIASCHLGPLDREETREYIEHRLERAGNRDAPVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLE------- 249 (269)
T ss_pred HHHhheeeeeeCCCCCHHHHHHHHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHc-------
Confidence 46678888899999999999999998886543 357889999999999996 456999999998888664
Q ss_pred cccccCCCCcHHHHHHHHHhhC
Q 012000 431 VKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 431 ~~~~~~~~it~~df~~al~~~~ 452 (473)
....|+.+++..++..+.
T Consensus 250 ----~~~~i~~~~v~~~~~~~~ 267 (269)
T TIGR03015 250 ----EKREIGGEEVREVIAEID 267 (269)
T ss_pred ----CCCCCCHHHHHHHHHHhh
Confidence 225699999999998764
No 191
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.8e-10 Score=112.10 Aligned_cols=139 Identities=24% Similarity=0.286 Sum_probs=91.3
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC------------------
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------------------ 274 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~------------------ 274 (473)
..|.||+|++.+|+.|..... + .+++||+||||||||+||+.+..-+-
T Consensus 176 ~D~~DV~GQ~~AKrAleiAAA-----------G---gHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g 241 (490)
T COG0606 176 PDFKDVKGQEQAKRALEIAAA-----------G---GHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAG 241 (490)
T ss_pred cchhhhcCcHHHHHHHHHHHh-----------c---CCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhcc
Confidence 489999999999999987764 1 47899999999999999998876430
Q ss_pred -----CcEEE----------EecCccchh----hhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-
Q 012000 275 -----ATFFN----------VSASSLTSK----WVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS- 334 (473)
Q Consensus 275 -----~~~~~----------v~~~~l~~~----~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~- 334 (473)
.+++. .+...++.. ..|+.....+.+|++||+ .+..+.+++.|.+-|+.-..
T Consensus 242 ~~~~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDEl--------pef~~~iLe~LR~PLE~g~i~ 313 (490)
T COG0606 242 DLHEGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDEL--------PEFKRSILEALREPLENGKII 313 (490)
T ss_pred cccccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeecc--------chhhHHHHHHHhCccccCcEE
Confidence 11111 011111111 123333444679999999 56666777777766652210
Q ss_pred --------CCCCcEEEEeecCCCC-----------------------CCCHHHhcccccccccCCCcHHH
Q 012000 335 --------NPNDLVIVMGATNKPQ-----------------------ELDDAVLRRLVKRIYVPLPDENV 373 (473)
Q Consensus 335 --------~~~~~v~vI~tTn~~~-----------------------~Ld~al~rRf~~~i~~~~P~~~~ 373 (473)
.-+.++.+|+++|..- .|...+++|+|..+.++.++..+
T Consensus 314 IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e 383 (490)
T COG0606 314 ISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGE 383 (490)
T ss_pred EEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHH
Confidence 1124578888887522 34568888999989888876433
No 192
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.06 E-value=1.8e-09 Score=117.00 Aligned_cols=103 Identities=19% Similarity=0.252 Sum_probs=66.8
Q ss_pred cEEEEeecCCC--CCCCHHHhcccc---cccccCC--C-cHHHHHHHHHH---HhccCC--CCCChhhHHHHHHHcC---
Q 012000 339 LVIVMGATNKP--QELDDAVLRRLV---KRIYVPL--P-DENVRRLLLKH---KLKGQA--FSLPGGDLERLVRETE--- 402 (473)
Q Consensus 339 ~v~vI~tTn~~--~~Ld~al~rRf~---~~i~~~~--P-~~~~r~~il~~---~l~~~~--~~l~~~~l~~La~~t~--- 402 (473)
.+.||+++|.. ..+++++++||. ..++|+. | +.+.+..+.+. .+++.+ ..++++.+..|.+...
T Consensus 268 dvrvIa~~~~~~l~~l~~~l~~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~G~l~~~s~~Av~~Li~~~~R~a 347 (608)
T TIGR00764 268 DFILVASGNLDDLEGMHPALRSRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKDGRIPHFTRDAVEEIVREAQRRA 347 (608)
T ss_pred ceEEEEECCHHHHhhcCHHHHHHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHhCCCCcCCHHHHHHHHHHHHHHH
Confidence 57889999874 578999999998 5555433 3 34555444333 333332 2457777777764211
Q ss_pred C------CCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 403 G------YSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 403 g------~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
| .+.++|.++++.|...|..+ ....|+.+|+.+|++..+
T Consensus 348 g~r~~lsl~~R~L~~llR~A~~iA~~~-----------~~~~I~~ehV~~Ai~~~~ 392 (608)
T TIGR00764 348 GRKDHLTLRLRELGGLVRAAGDIAKSS-----------GKVYVTAEHVLKAKKLAK 392 (608)
T ss_pred hcccccCCCHHHHHHHHHHHHHHHHhc-----------CCceecHHHHHHHHHHHH
Confidence 1 34689999999985544222 124699999999998754
No 193
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.06 E-value=2.3e-09 Score=117.74 Aligned_cols=189 Identities=20% Similarity=0.267 Sum_probs=122.4
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccch-
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS- 287 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~- 287 (473)
..+|++++|.....+.+.+.+... ......|||+|++||||+++|++|.... +.+|+.++|..+..
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~----------a~~~~pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~ 390 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQA----------AKSSFPVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDE 390 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHH----------hCcCCCEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChH
Confidence 457999999988888887777522 1224569999999999999999998865 47999999986632
Q ss_pred ----hhhhhh------------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC--C-----CCcEEEEe
Q 012000 288 ----KWVGEG------------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN--P-----NDLVIVMG 344 (473)
Q Consensus 288 ----~~~g~~------------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~--~-----~~~v~vI~ 344 (473)
.++|.. +..-...++||+++. ....+...|+..++.-... . +-.+.+|+
T Consensus 391 ~~~~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~--------l~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~riI~ 462 (638)
T PRK11388 391 ALAEEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEY--------LSPELQSALLQVLKTGVITRLDSRRLIPVDVRVIA 462 (638)
T ss_pred HHHHHhcCCCCcCccCCCCCceeECCCCEEEEcChhh--------CCHHHHHHHHHHHhcCcEEeCCCCceEEeeEEEEE
Confidence 233321 112245677999943 3344555666655422100 0 11477898
Q ss_pred ecCCCC-------CCCHHHhcccccccccCCCcHHHHH----HHHHHHhcc------CCCCCChhhHHHHHHHcCCCCHH
Q 012000 345 ATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLKG------QAFSLPGGDLERLVRETEGYSGS 407 (473)
Q Consensus 345 tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~----~il~~~l~~------~~~~l~~~~l~~La~~t~g~s~~ 407 (473)
||+..- .+.+.+.-|+.. +.+.+|...+|. .|+.+++.. ..+.++++.+..|......-+.+
T Consensus 463 ~t~~~l~~~~~~~~f~~dL~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~s~~a~~~L~~y~WPGNvr 541 (638)
T PRK11388 463 TTTADLAMLVEQNRFSRQLYYALHA-FEITIPPLRMRREDIPALVNNKLRSLEKRFSTRLKIDDDALARLVSYRWPGNDF 541 (638)
T ss_pred eccCCHHHHHhcCCChHHHhhhhce-eEEeCCChhhhhhHHHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHcCCCCChHH
Confidence 888632 233334444432 456666666653 344444432 13457888999999887655889
Q ss_pred HHHHHHHHHHHH
Q 012000 408 DLQALCEEAAMM 419 (473)
Q Consensus 408 dL~~l~~~A~~~ 419 (473)
+|.++++.|+..
T Consensus 542 eL~~~l~~~~~~ 553 (638)
T PRK11388 542 ELRSVIENLALS 553 (638)
T ss_pred HHHHHHHHHHHh
Confidence 999999988764
No 194
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.05 E-value=5.4e-09 Score=110.40 Aligned_cols=138 Identities=25% Similarity=0.308 Sum_probs=90.2
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC------------------
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------------------ 274 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~------------------ 274 (473)
..|+||.|+..+++.|.-.+. ...+++|+||||||||+++++++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa~--------------~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g 254 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAAA--------------GGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVG 254 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhcc--------------CCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchh
Confidence 489999999999887765442 236799999999999999999986331
Q ss_pred ----------CcEEEEecCccchh--------hhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC---
Q 012000 275 ----------ATFFNVSASSLTSK--------WVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT--- 333 (473)
Q Consensus 275 ----------~~~~~v~~~~l~~~--------~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~--- 333 (473)
.+|.....+..... ..|......+.+++|||+. .........|+..|+.-.
T Consensus 255 ~~~~~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~pG~i~lA~~GvLfLDEi~--------e~~~~~~~~L~~~LE~~~v~i 326 (499)
T TIGR00368 255 KLIDRKQIKQRPFRSPHHSASKPALVGGGPIPLPGEISLAHNGVLFLDELP--------EFKRSVLDALREPIEDGSISI 326 (499)
T ss_pred hhccccccccCCccccccccchhhhhCCccccchhhhhccCCCeEecCChh--------hCCHHHHHHHHHHHHcCcEEE
Confidence 22322222111111 1223334446788899993 444556666666664221
Q ss_pred ------CCCCCcEEEEeecCCC-----C------------------CCCHHHhcccccccccCCCcHH
Q 012000 334 ------SNPNDLVIVMGATNKP-----Q------------------ELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 334 ------~~~~~~v~vI~tTn~~-----~------------------~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
...+.++.+|+++|.- . .+..+|++||+.++.++.++..
T Consensus 327 ~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~ 394 (499)
T TIGR00368 327 SRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPE 394 (499)
T ss_pred EecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHH
Confidence 1123468999999862 1 4889999999999988876543
No 195
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.02 E-value=1.8e-09 Score=105.12 Aligned_cols=69 Identities=30% Similarity=0.450 Sum_probs=55.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCC--CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~--~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
-|+|++++|+.+.=++.....+..+-..++ -.|++||+.||.|+|||-+||.+|+-.++||+.|.+..+
T Consensus 16 yIIGQ~~AKkaVAIALRNR~RR~qL~~~lr~EV~PKNILMIGpTGVGKTEIARRLAkl~~aPFiKVEATKf 86 (444)
T COG1220 16 YIIGQDEAKKAVAIALRNRWRRMQLEEELRDEVTPKNILMIGPTGVGKTEIARRLAKLAGAPFIKVEATKF 86 (444)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHhcCHHHhhccCccceEEECCCCCcHHHHHHHHHHHhCCCeEEEEeeee
Confidence 479999999999877765444444333332 347899999999999999999999999999999887654
No 196
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.01 E-value=3.6e-09 Score=108.83 Aligned_cols=132 Identities=21% Similarity=0.349 Sum_probs=82.5
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc-------EEEEecC----
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT-------FFNVSAS---- 283 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-------~~~v~~~---- 283 (473)
++++++.++..+.+...+. ..++++|+||||||||++|+.+|..+... ++.+...
T Consensus 174 l~d~~i~e~~le~l~~~L~--------------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYe 239 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT--------------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239 (459)
T ss_pred hhcccCCHHHHHHHHHHHh--------------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHH
Confidence 6678888888877766653 14689999999999999999999987431 2223221
Q ss_pred ccchhh----h------h-------hhhh--hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc------------
Q 012000 284 SLTSKW----V------G-------EGEK--LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV------------ 332 (473)
Q Consensus 284 ~l~~~~----~------g-------~~~~--~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~------------ 332 (473)
+++..+ + | .+.. ..+.+++||||.+... .++..+++..|+.-
T Consensus 240 DFI~G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-------~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 240 DFIQGYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-------SKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred HHhcccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-------HHhhhhhhhhccccccccccceeeec
Confidence 222111 0 0 1111 1246788999954332 23334444434310
Q ss_pred ------CCCCCCcEEEEeecCCCC----CCCHHHhcccccccccCC
Q 012000 333 ------TSNPNDLVIVMGATNKPQ----ELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 333 ------~~~~~~~v~vI~tTn~~~----~Ld~al~rRf~~~i~~~~ 368 (473)
.-..+.++.||||+|..+ .+|.|++|||.. |.+.+
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF~f-i~i~p 357 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSF-IDIEP 357 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhhhe-EEecC
Confidence 012246799999999988 799999999965 55543
No 197
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.01 E-value=4.9e-09 Score=111.51 Aligned_cols=188 Identities=20% Similarity=0.244 Sum_probs=118.6
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhh
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW 289 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~ 289 (473)
.+|++++|.....+.+.+.+.. ......+|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 209 ~~f~~iiG~S~~m~~~~~~i~~----------~A~~~~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~l 278 (526)
T TIGR02329 209 YRLDDLLGASAPMEQVRALVRL----------YARSDATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESL 278 (526)
T ss_pred cchhheeeCCHHHHHHHHHHHH----------HhCCCCcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhH
Confidence 5799999999998888888752 12224579999999999999999998754 5799999998764322
Q ss_pred -----hhh----------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----CC--CCCcEE
Q 012000 290 -----VGE----------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN--PNDLVI 341 (473)
Q Consensus 290 -----~g~----------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~~--~~~~v~ 341 (473)
+|. .+..-...++||+++ .....+...|+..++.-. .. ..-.+.
T Consensus 279 leseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~--------~Lp~~~Q~~Ll~~L~~~~~~r~g~~~~~~~dvR 350 (526)
T TIGR02329 279 LEAELFGYEEGAFTGARRGGRTGLIEAAHRGTLFLDEIG--------EMPLPLQTRLLRVLEEREVVRVGGTEPVPVDVR 350 (526)
T ss_pred HHHHhcCCcccccccccccccccchhhcCCceEEecChH--------hCCHHHHHHHHHHHhcCcEEecCCCceeeecce
Confidence 221 122234567799984 334455556666554221 00 112357
Q ss_pred EEeecCCCC-------CCCHHHhcccccccccCCCcHHHH----HHHHHHHhcc----CCCCCChhhHHH-------HHH
Q 012000 342 VMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLKG----QAFSLPGGDLER-------LVR 399 (473)
Q Consensus 342 vI~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r----~~il~~~l~~----~~~~l~~~~l~~-------La~ 399 (473)
+|++|+..- .+.+.+..|+.. +.+.+|...+| ..|+.+++.. .++.++++.+.. |..
T Consensus 351 iIaat~~~l~~~v~~g~fr~dL~~rL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~~~~~~L~~ 429 (526)
T TIGR02329 351 VVAATHCALTTAVQQGRFRRDLFYRLSI-LRIALPPLRERPGDILPLAAEYLVQAAAALRLPDSEAAAQVLAGVADPLQR 429 (526)
T ss_pred EEeccCCCHHHHhhhcchhHHHHHhcCC-cEEeCCCchhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHHhHHHHHHHHh
Confidence 888887642 122333335432 45555655554 3455555543 344566666666 666
Q ss_pred HcCCCCHHHHHHHHHHHHHH
Q 012000 400 ETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 400 ~t~g~s~~dL~~l~~~A~~~ 419 (473)
...--+-++|++++++++..
T Consensus 430 y~WPGNvrEL~nvier~~i~ 449 (526)
T TIGR02329 430 YPWPGNVRELRNLVERLALE 449 (526)
T ss_pred CCCCchHHHHHHHHHHHHHh
Confidence 55544788999999998765
No 198
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=2.7e-09 Score=115.85 Aligned_cols=195 Identities=21% Similarity=0.296 Sum_probs=136.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------C
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~ 274 (473)
.+...-+...+|-++|.++-++++.+.+. ++..++-+|.|+||+|||.++..+|... +
T Consensus 159 dlt~~Ar~gklDPvIGRd~EI~r~iqIL~------------RR~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~ 226 (786)
T COG0542 159 DLTELAREGKLDPVIGRDEEIRRTIQILS------------RRTKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKD 226 (786)
T ss_pred hhHHHHhcCCCCCCcChHHHHHHHHHHHh------------ccCCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcC
Confidence 44444567889999999999998888774 2334578899999999999999999875 5
Q ss_pred CcEEEEecCccch--hhhhhhhhhh-----------cceeeeeccccccccCcchH-HHHHHHHHHHHhcCcCCCCCCcE
Q 012000 275 ATFFNVSASSLTS--KWVGEGEKLV-----------RTLFMIDSIMSTRMANENDA-SRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 275 ~~~~~v~~~~l~~--~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~~-~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
..++.++...++. +|-|+.+..+ +.+++|||++..-+.+..+. .-...+-|.-.+. .+.+
T Consensus 227 ~~i~sLD~g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaLA------RGeL 300 (786)
T COG0542 227 KRIYSLDLGSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDAANLLKPALA------RGEL 300 (786)
T ss_pred CEEEEecHHHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccchhhhhHHHHh------cCCe
Confidence 7788888777644 4666666555 35778999988776654322 1222222222222 3347
Q ss_pred EEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHh----ccCCCCCChhhHHHHHHHcCCCC-----H
Q 012000 341 IVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKL----KGQAFSLPGGDLERLVRETEGYS-----G 406 (473)
Q Consensus 341 ~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l----~~~~~~l~~~~l~~La~~t~g~s-----~ 406 (473)
-+||+|..-+ .=|+||-|||.. |++.-|+.++-..||+-.- ..+++.+++..+...+..+..|- +
T Consensus 301 ~~IGATT~~EYRk~iEKD~AL~RRFQ~-V~V~EPs~e~ti~ILrGlk~~yE~hH~V~i~D~Al~aAv~LS~RYI~dR~LP 379 (786)
T COG0542 301 RCIGATTLDEYRKYIEKDAALERRFQK-VLVDEPSVEDTIAILRGLKERYEAHHGVRITDEALVAAVTLSDRYIPDRFLP 379 (786)
T ss_pred EEEEeccHHHHHHHhhhchHHHhcCce-eeCCCCCHHHHHHHHHHHHHHHHHccCceecHHHHHHHHHHHHhhcccCCCC
Confidence 8888885422 459999999987 9999999999999988543 34677888998888887766544 3
Q ss_pred HHHHHHHHHHHH
Q 012000 407 SDLQALCEEAAM 418 (473)
Q Consensus 407 ~dL~~l~~~A~~ 418 (473)
.---.|+.+|+.
T Consensus 380 DKAIDLiDeA~a 391 (786)
T COG0542 380 DKAIDLLDEAGA 391 (786)
T ss_pred chHHHHHHHHHH
Confidence 333344555443
No 199
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.00 E-value=6.8e-09 Score=110.44 Aligned_cols=188 Identities=20% Similarity=0.217 Sum_probs=117.8
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHH-----------cCCcEEEEe
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE-----------SQATFFNVS 281 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e-----------~~~~~~~v~ 281 (473)
..|++++|.....+.+++.+... .....+|||+|++||||+++|++|-.. .+.+|+.++
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~----------A~s~~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~in 285 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLY----------ARSSAAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVN 285 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHH----------hCCCCcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEee
Confidence 46899999999999888887521 223457999999999999999999876 467999999
Q ss_pred cCccchhh-----hh----------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C-
Q 012000 282 ASSLTSKW-----VG----------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S- 334 (473)
Q Consensus 282 ~~~l~~~~-----~g----------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~- 334 (473)
|..+.... +| ..+..-...++||+|+ .....+...|+..++.-. .
T Consensus 286 Caal~e~lleseLFG~~~gaftga~~~~~~Gl~e~A~gGTLfLdeI~--------~Lp~~~Q~kLl~~L~e~~~~r~G~~ 357 (538)
T PRK15424 286 CGAIAESLLEAELFGYEEGAFTGSRRGGRAGLFEIAHGGTLFLDEIG--------EMPLPLQTRLLRVLEEKEVTRVGGH 357 (538)
T ss_pred cccCChhhHHHHhcCCccccccCccccccCCchhccCCCEEEEcChH--------hCCHHHHHHHHhhhhcCeEEecCCC
Confidence 98764322 22 1112234567799994 334455566666554221 0
Q ss_pred -CCCCcEEEEeecCCCC-------CCCHHHhcccccccccCCCcHHHHH----HHHHHHhcc----CCCCCChhhH----
Q 012000 335 -NPNDLVIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLKG----QAFSLPGGDL---- 394 (473)
Q Consensus 335 -~~~~~v~vI~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~----~il~~~l~~----~~~~l~~~~l---- 394 (473)
..+-.+.+|++||..- .+.+.+..|+.. +.+.+|...+|. .|+.+++.. .+..++...+
T Consensus 358 ~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL~~-~~I~lPPLReR~eDI~~L~~~fl~~~~~~~~~~~~~~a~~~~~ 436 (538)
T PRK15424 358 QPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRLSI-LRLQLPPLRERVADILPLAESFLKQSLAALSAPFSAALRQGLQ 436 (538)
T ss_pred ceeccceEEEEecCCCHHHHHhcccchHHHHHHhcC-CeecCCChhhchhHHHHHHHHHHHHHHHHcCCCCCHHHHHhhH
Confidence 1112368888887632 122233334432 456666665553 455555543 3444555444
Q ss_pred ---HHHHHHcCCCCHHHHHHHHHHHHHH
Q 012000 395 ---ERLVRETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 395 ---~~La~~t~g~s~~dL~~l~~~A~~~ 419 (473)
..|.....--+-++|++++++++..
T Consensus 437 ~a~~~L~~y~WPGNvREL~nvier~~i~ 464 (538)
T PRK15424 437 QCETLLLHYDWPGNVRELRNLMERLALF 464 (538)
T ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHHh
Confidence 3444443434789999999998764
No 200
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=98.99 E-value=7.6e-09 Score=110.62 Aligned_cols=192 Identities=20% Similarity=0.172 Sum_probs=121.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
....+|++++|.....+.+.+.+... ......|||+|++||||+++|+++-... +.+|+.++|..+.
T Consensus 198 ~~~~~f~~~ig~s~~~~~~~~~~~~~----------A~~~~pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~ 267 (520)
T PRK10820 198 NDDSAFSQIVAVSPKMRQVVEQARKL----------AMLDAPLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIP 267 (520)
T ss_pred cccccccceeECCHHHHHHHHHHHHH----------hCCCCCEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCC
Confidence 34679999999988777777666421 1123569999999999999999986554 4689999998764
Q ss_pred hhh-----hhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C--CCCCc
Q 012000 287 SKW-----VGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDL 339 (473)
Q Consensus 287 ~~~-----~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~--~~~~~ 339 (473)
..+ +|. .+..-...++||+++. ....+...|+..+..-. . .....
T Consensus 268 ~~~~e~elFG~~~~~~~~~~~~~~g~~e~a~~GtL~LdeI~~--------L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~ 339 (520)
T PRK10820 268 DDVVESELFGHAPGAYPNALEGKKGFFEQANGGSVLLDEIGE--------MSPRMQAKLLRFLNDGTFRRVGEDHEVHVD 339 (520)
T ss_pred HHHHHHHhcCCCCCCcCCcccCCCChhhhcCCCEEEEeChhh--------CCHHHHHHHHHHHhcCCcccCCCCcceeee
Confidence 422 221 1112245667899843 33445555665554311 0 01124
Q ss_pred EEEEeecCCCC-------CCCHHHhcccccccccCCCcHHHHH----HHHHHHhc----cCC---CCCChhhHHHHHHHc
Q 012000 340 VIVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLK----GQA---FSLPGGDLERLVRET 401 (473)
Q Consensus 340 v~vI~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~----~il~~~l~----~~~---~~l~~~~l~~La~~t 401 (473)
+.||++|+.+- .+.+.+..|+.. +.+.+|...+|. .++.+++. +.+ ..++++.+..|....
T Consensus 340 vRiI~st~~~l~~l~~~g~f~~dL~~rL~~-~~i~lPpLreR~~Di~~L~~~fl~~~~~~~g~~~~~ls~~a~~~L~~y~ 418 (520)
T PRK10820 340 VRVICATQKNLVELVQKGEFREDLYYRLNV-LTLNLPPLRDRPQDIMPLTELFVARFADEQGVPRPKLAADLNTVLTRYG 418 (520)
T ss_pred eEEEEecCCCHHHHHHcCCccHHHHhhcCe-eEEeCCCcccChhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHhcCC
Confidence 67888886542 345667777653 455555554443 34444432 332 356788888888875
Q ss_pred CCCCHHHHHHHHHHHHHHh
Q 012000 402 EGYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 402 ~g~s~~dL~~l~~~A~~~a 420 (473)
..-.-++|++++.+|+..+
T Consensus 419 WPGNvreL~nvl~~a~~~~ 437 (520)
T PRK10820 419 WPGNVRQLKNAIYRALTQL 437 (520)
T ss_pred CCCHHHHHHHHHHHHHHhC
Confidence 4447899999999887653
No 201
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=98.99 E-value=1.1e-08 Score=113.35 Aligned_cols=190 Identities=19% Similarity=0.269 Sum_probs=122.9
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK 288 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~ 288 (473)
+..|++++|.....+.+.+.+... .....+|||+|++|||||++|++|.... +.+|+.++|..+...
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~----------a~~~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~ 441 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMV----------AQSDSTVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAG 441 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHH----------hCCCCCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChh
Confidence 357889999999988888877531 2224579999999999999999998754 579999999865321
Q ss_pred -----hhh---------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C--CCCCcEE
Q 012000 289 -----WVG---------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDLVI 341 (473)
Q Consensus 289 -----~~g---------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~--~~~~~v~ 341 (473)
.+| ..+..-...++||+++. ........|+..++.-. . .....+.
T Consensus 442 ~~~~~lfg~~~~~~~g~~~~~~g~le~a~~GtL~Ldei~~--------L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 513 (686)
T PRK15429 442 LLESDLFGHERGAFTGASAQRIGRFELADKSSLFLDEVGD--------MPLELQPKLLRVLQEQEFERLGSNKIIQTDVR 513 (686)
T ss_pred HhhhhhcCcccccccccccchhhHHHhcCCCeEEEechhh--------CCHHHHHHHHHHHHhCCEEeCCCCCcccceEE
Confidence 122 12222345778999943 33445555665554221 0 1123478
Q ss_pred EEeecCCCC-------CCCHHHhcccccccccCCCcHHHHHH----HHHHHhcc----CC--C-CCChhhHHHHHHHcCC
Q 012000 342 VMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG----QA--F-SLPGGDLERLVRETEG 403 (473)
Q Consensus 342 vI~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~~----il~~~l~~----~~--~-~l~~~~l~~La~~t~g 403 (473)
+|++|+..- .+...+..|+.. +.+.+|...+|.+ |+++++.+ .+ + .++++.+..|.....-
T Consensus 514 iI~~t~~~l~~~~~~~~f~~~L~~~l~~-~~i~lPpLreR~~Di~~L~~~~l~~~~~~~~~~~~~~s~~al~~L~~y~WP 592 (686)
T PRK15429 514 LIAATNRDLKKMVADREFRSDLYYRLNV-FPIHLPPLRERPEDIPLLVKAFTFKIARRMGRNIDSIPAETLRTLSNMEWP 592 (686)
T ss_pred EEEeCCCCHHHHHHcCcccHHHHhccCe-eEEeCCChhhhHhHHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCC
Confidence 898887632 223334444432 4566666666543 45554432 22 2 3678888999887665
Q ss_pred CCHHHHHHHHHHHHHHh
Q 012000 404 YSGSDLQALCEEAAMMP 420 (473)
Q Consensus 404 ~s~~dL~~l~~~A~~~a 420 (473)
-+-++|++++++|+..+
T Consensus 593 GNvrEL~~~i~~a~~~~ 609 (686)
T PRK15429 593 GNVRELENVIERAVLLT 609 (686)
T ss_pred CcHHHHHHHHHHHHHhC
Confidence 58899999999998654
No 202
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=98.97 E-value=1.4e-08 Score=97.05 Aligned_cols=99 Identities=21% Similarity=0.249 Sum_probs=65.5
Q ss_pred EEEeecCC-------------CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHH
Q 012000 341 IVMGATNK-------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGS 407 (473)
Q Consensus 341 ~vI~tTn~-------------~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~ 407 (473)
+||.+||+ |+-+++.++.|+.. |..-+.+.++..+|++....-.++.++++.++.|+.....-|-+
T Consensus 327 ivifAsNrG~~~irGt~d~~sPhGip~dllDRl~I-irt~~y~~~e~r~Ii~~Ra~~E~l~~~e~a~~~l~~~gt~tsLR 405 (456)
T KOG1942|consen 327 IVIFASNRGMCTIRGTEDILSPHGIPPDLLDRLLI-IRTLPYDEEEIRQIIKIRAQVEGLQVEEEALDLLAEIGTSTSLR 405 (456)
T ss_pred eEEEecCCcceeecCCcCCCCCCCCCHHHhhheeE-EeeccCCHHHHHHHHHHHHhhhcceecHHHHHHHHhhccchhHH
Confidence 56667765 66789999999854 55556677777788898899999999999999999875544444
Q ss_pred HHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 408 DLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 408 dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
---.|+.-|...+- ......|..+|++++-.-+
T Consensus 406 y~vqLl~p~~~~ak-----------~~g~~~i~v~dvee~~~Lf 438 (456)
T KOG1942|consen 406 YAVQLLTPASILAK-----------TNGRKEISVEDVEEVTELF 438 (456)
T ss_pred HHHHhcCHHHHHHH-----------HcCCceeecccHHHHHHHH
Confidence 33334333333321 1122346667777665544
No 203
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=98.97 E-value=1.5e-08 Score=108.27 Aligned_cols=189 Identities=20% Similarity=0.225 Sum_probs=124.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhh-
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW- 289 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~- 289 (473)
.+.+++|.....+.+.+.+.. .......|||+|++||||+++|++|.... +.+|+.++|..+....
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~----------~a~~~~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~ 254 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEV----------VAASDLNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLA 254 (509)
T ss_pred cCCceeecCHHHHHHHHHHHH----------HhCCCCcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHH
Confidence 678899999999998888853 22334679999999999999999998874 5799999998764321
Q ss_pred ----hhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C--CCCCcEEEE
Q 012000 290 ----VGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDLVIVM 343 (473)
Q Consensus 290 ----~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~--~~~~~v~vI 343 (473)
+|. .+..-...++||+++. ........|+..++.-. . ...-.+.+|
T Consensus 255 e~~lfG~~~g~~~ga~~~~~g~~~~a~gGtL~ldeI~~--------L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI 326 (509)
T PRK05022 255 ESELFGHVKGAFTGAISNRSGKFELADGGTLFLDEIGE--------LPLALQAKLLRVLQYGEIQRVGSDRSLRVDVRVI 326 (509)
T ss_pred HHHhcCccccccCCCcccCCcchhhcCCCEEEecChhh--------CCHHHHHHHHHHHhcCCEeeCCCCcceecceEEE
Confidence 221 1122235567898843 33445555665554221 0 011247889
Q ss_pred eecCCCC-------CCCHHHhcccccccccCCCcHHHHH----HHHHHHhc----c---CCCCCChhhHHHHHHHcCCCC
Q 012000 344 GATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR----LLLKHKLK----G---QAFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 344 ~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~----~il~~~l~----~---~~~~l~~~~l~~La~~t~g~s 405 (473)
++|+..- .+.+.+..|+.. +.+.+|...+|. .|+.+++. + ....+++..+..|.....--+
T Consensus 327 ~~t~~~l~~~~~~~~f~~dL~~rl~~-~~i~lPpLreR~eDI~~L~~~fl~~~~~~~~~~~~~~s~~a~~~L~~y~WPGN 405 (509)
T PRK05022 327 AATNRDLREEVRAGRFRADLYHRLSV-FPLSVPPLRERGDDVLLLAGYFLEQNRARLGLRSLRLSPAAQAALLAYDWPGN 405 (509)
T ss_pred EecCCCHHHHHHcCCccHHHHhcccc-cEeeCCCchhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCCc
Confidence 8987642 344555556543 445556555553 34444433 2 235578889999988866668
Q ss_pred HHHHHHHHHHHHHHhH
Q 012000 406 GSDLQALCEEAAMMPI 421 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a~ 421 (473)
-++|++++++|+..+.
T Consensus 406 vrEL~~~i~ra~~~~~ 421 (509)
T PRK05022 406 VRELEHVISRAALLAR 421 (509)
T ss_pred HHHHHHHHHHHHHhcC
Confidence 9999999999987663
No 204
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=98.96 E-value=1e-08 Score=103.38 Aligned_cols=152 Identities=21% Similarity=0.292 Sum_probs=106.4
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec----------
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA---------- 282 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~---------- 282 (473)
..|.-++|++..|..|.-..+.| .-.|+|+-|+.|||||+++|+||.-+.---....|
T Consensus 14 ~pf~aivGqd~lk~aL~l~av~P------------~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~ 81 (423)
T COG1239 14 LPFTAIVGQDPLKLALGLNAVDP------------QIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPE 81 (423)
T ss_pred cchhhhcCchHHHHHHhhhhccc------------ccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChh
Confidence 56889999999998886554322 13689999999999999999999876211111011
Q ss_pred ------------------------------Cccchhhh------------------hhhhhhhcceeeeeccccccccCc
Q 012000 283 ------------------------------SSLTSKWV------------------GEGEKLVRTLFMIDSIMSTRMANE 314 (473)
Q Consensus 283 ------------------------------~~l~~~~~------------------g~~~~~~~~if~IDei~~~~~~~~ 314 (473)
.......+ |...+.-+.|++|||+
T Consensus 82 ~~c~~c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEv-------- 153 (423)
T COG1239 82 EMCDECRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEV-------- 153 (423)
T ss_pred hhhHHHHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEecc--------
Confidence 00000011 1112223568889999
Q ss_pred chHHHHHHHHHHHHhc---------CcCCCCCCcEEEEeecCCCC-CCCHHHhcccccccccCCC-cHHHHHHHHHHHhc
Q 012000 315 NDASRRLKSEFLIQFD---------GVTSNPNDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLP-DENVRRLLLKHKLK 383 (473)
Q Consensus 315 ~~~~~~~~~~ll~~ld---------g~~~~~~~~v~vI~tTn~~~-~Ld~al~rRf~~~i~~~~P-~~~~r~~il~~~l~ 383 (473)
+....++.+.||..+. |+....+-++++|||+|+.. .|-+.|+.||...+.+..| +.++|.+|+++.+.
T Consensus 154 nlL~d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~ 233 (423)
T COG1239 154 NLLDDHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLA 233 (423)
T ss_pred ccccHHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHH
Confidence 6666777888776553 45555567899999999866 6999999999988877776 67899999988776
Q ss_pred c
Q 012000 384 G 384 (473)
Q Consensus 384 ~ 384 (473)
.
T Consensus 234 f 234 (423)
T COG1239 234 F 234 (423)
T ss_pred h
Confidence 5
No 205
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=98.95 E-value=4.7e-08 Score=97.60 Aligned_cols=160 Identities=18% Similarity=0.236 Sum_probs=103.3
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---------------------EEE
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---------------------FFN 279 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---------------------~~~ 279 (473)
++.+.+.|...+. ..+.++++||+||+|+||+++|.++|+.+-+. +..
T Consensus 9 ~~~~~~~l~~~~~-----------~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~ 77 (319)
T PRK08769 9 QQRAYDQTVAALD-----------AGRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQL 77 (319)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEE
Confidence 3455666666553 23446789999999999999999999876321 222
Q ss_pred E--ecCccc-----hhhhhhhhhh-----------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEE
Q 012000 280 V--SASSLT-----SKWVGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVI 341 (473)
Q Consensus 280 v--~~~~l~-----~~~~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~ 341 (473)
+ .+..-- .-.+...+.. -..|+.||+.+ .......+.||+.++ .++.+++
T Consensus 78 i~~~p~~~~~k~~~~I~idqIR~l~~~~~~~p~~g~~kV~iI~~ae--------~m~~~AaNaLLKtLE----EPp~~~~ 145 (319)
T PRK08769 78 VSFIPNRTGDKLRTEIVIEQVREISQKLALTPQYGIAQVVIVDPAD--------AINRAACNALLKTLE----EPSPGRY 145 (319)
T ss_pred EecCCCcccccccccccHHHHHHHHHHHhhCcccCCcEEEEeccHh--------hhCHHHHHHHHHHhh----CCCCCCe
Confidence 2 110000 0001111111 12566677773 334556788898887 5566688
Q ss_pred EEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHH
Q 012000 342 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 342 vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~ 410 (473)
+|.+|+.++.|.|.|++||.. +.|+.|+.++....+.. .+ ++..+...++..+.|..+..+.
T Consensus 146 fiL~~~~~~~lLpTIrSRCq~-i~~~~~~~~~~~~~L~~----~~--~~~~~a~~~~~l~~G~p~~A~~ 207 (319)
T PRK08769 146 LWLISAQPARLPATIRSRCQR-LEFKLPPAHEALAWLLA----QG--VSERAAQEALDAARGHPGLAAQ 207 (319)
T ss_pred EEEEECChhhCchHHHhhheE-eeCCCcCHHHHHHHHHH----cC--CChHHHHHHHHHcCCCHHHHHH
Confidence 888999999999999999976 78888988877766653 23 3455566778888885554443
No 206
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=98.95 E-value=1.2e-08 Score=92.34 Aligned_cols=125 Identities=21% Similarity=0.292 Sum_probs=82.9
Q ss_pred ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----------------------Cc
Q 012000 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----------------------AT 276 (473)
Q Consensus 220 Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----------------------~~ 276 (473)
|++.+++.|.+.+. ....++.+||+||+|+||+++|+++|+.+- ..
T Consensus 1 gq~~~~~~L~~~~~-----------~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d 69 (162)
T PF13177_consen 1 GQEEIIELLKNLIK-----------SGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPD 69 (162)
T ss_dssp S-HHHHHHHHHHHH-----------CTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTT
T ss_pred CcHHHHHHHHHHHH-----------cCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcc
Confidence 78889999988875 334467899999999999999999999762 13
Q ss_pred EEEEecCcc----chhhhhh--------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEe
Q 012000 277 FFNVSASSL----TSKWVGE--------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 344 (473)
Q Consensus 277 ~~~v~~~~l----~~~~~g~--------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~ 344 (473)
++.++.... .-+.+.+ ....-..++.||++ +.......+.||+.|+ .++.++++|.
T Consensus 70 ~~~~~~~~~~~~i~i~~ir~i~~~~~~~~~~~~~KviiI~~a--------d~l~~~a~NaLLK~LE----epp~~~~fiL 137 (162)
T PF13177_consen 70 FIIIKPDKKKKSIKIDQIREIIEFLSLSPSEGKYKVIIIDEA--------DKLTEEAQNALLKTLE----EPPENTYFIL 137 (162)
T ss_dssp EEEEETTTSSSSBSHHHHHHHHHHCTSS-TTSSSEEEEEETG--------GGS-HHHHHHHHHHHH----STTTTEEEEE
T ss_pred eEEEecccccchhhHHHHHHHHHHHHHHHhcCCceEEEeehH--------hhhhHHHHHHHHHHhc----CCCCCEEEEE
Confidence 344443321 1000000 01112457778888 3445667889999998 5567799999
Q ss_pred ecCCCCCCCHHHhcccccccccCC
Q 012000 345 ATNKPQELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 345 tTn~~~~Ld~al~rRf~~~i~~~~ 368 (473)
+|+.+..|.+.+++||.. +.|+.
T Consensus 138 ~t~~~~~il~TI~SRc~~-i~~~~ 160 (162)
T PF13177_consen 138 ITNNPSKILPTIRSRCQV-IRFRP 160 (162)
T ss_dssp EES-GGGS-HHHHTTSEE-EEE--
T ss_pred EECChHHChHHHHhhceE-EecCC
Confidence 999999999999999965 55544
No 207
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.94 E-value=4.5e-09 Score=106.77 Aligned_cols=188 Identities=22% Similarity=0.247 Sum_probs=118.7
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHH----cCCcEEEEecCccch
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSASSLTS 287 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e----~~~~~~~v~~~~l~~ 287 (473)
...+++++|....-+.+++.+.. ......+||++|++||||+.+|++|... .+.+|+.+||+.+..
T Consensus 74 ~~~~~~LIG~~~~~~~~~eqik~----------~ap~~~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~e 143 (403)
T COG1221 74 SEALDDLIGESPSLQELREQIKA----------YAPSGLPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSE 143 (403)
T ss_pred chhhhhhhccCHHHHHHHHHHHh----------hCCCCCcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCc
Confidence 56789999988888888887753 1222467999999999999999998643 367999999987644
Q ss_pred hhh-----h---------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcC-----cC--CCCCCcE
Q 012000 288 KWV-----G---------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG-----VT--SNPNDLV 340 (473)
Q Consensus 288 ~~~-----g---------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg-----~~--~~~~~~v 340 (473)
... | -.++.-...+++|||...... ....++..++. +. ......|
T Consensus 144 n~~~~eLFG~~kGaftGa~~~k~Glfe~A~GGtLfLDEI~~LP~~--------~Q~kLl~~le~g~~~rvG~~~~~~~dV 215 (403)
T COG1221 144 NLQEAELFGHEKGAFTGAQGGKAGLFEQANGGTLFLDEIHRLPPE--------GQEKLLRVLEEGEYRRVGGSQPRPVDV 215 (403)
T ss_pred CHHHHHHhccccceeecccCCcCchheecCCCEEehhhhhhCCHh--------HHHHHHHHHHcCceEecCCCCCcCCCc
Confidence 321 1 112233456679999655433 34445555543 11 1223458
Q ss_pred EEEeecCCCCCCCHHHhc-------ccccccccCCCcHHHH----HHHHHHHh----ccCCCCCCh---hhHHHHHHHcC
Q 012000 341 IVMGATNKPQELDDAVLR-------RLVKRIYVPLPDENVR----RLLLKHKL----KGQAFSLPG---GDLERLVRETE 402 (473)
Q Consensus 341 ~vI~tTn~~~~Ld~al~r-------Rf~~~i~~~~P~~~~r----~~il~~~l----~~~~~~l~~---~~l~~La~~t~ 402 (473)
.+|+||+. .++.+++. |+.. .+.+|+..+| ..++++++ .+.+..+.. ..+..|-....
T Consensus 216 Rli~AT~~--~l~~~~~~g~dl~~rl~~~--~I~LPpLrER~~Di~~L~e~Fl~~~~~~l~~~~~~~~~~a~~~L~~y~~ 291 (403)
T COG1221 216 RLICATTE--DLEEAVLAGADLTRRLNIL--TITLPPLRERKEDILLLAEHFLKSEARRLGLPLSVDSPEALRALLAYDW 291 (403)
T ss_pred eeeecccc--CHHHHHHhhcchhhhhcCc--eecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 89998873 55555554 3333 4555555554 34555544 344444433 34555555433
Q ss_pred CCCHHHHHHHHHHHHHHhH
Q 012000 403 GYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 403 g~s~~dL~~l~~~A~~~a~ 421 (473)
--+-++|+++++.++..+.
T Consensus 292 pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 292 PGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCcHHHHHHHHHHHHHHhc
Confidence 2378999999999988874
No 208
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=98.94 E-value=3.7e-08 Score=99.32 Aligned_cols=144 Identities=17% Similarity=0.189 Sum_probs=97.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCC------------------------cEEEEecCcc-chhhhhhhhh-----
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQA------------------------TFFNVSASSL-TSKWVGEGEK----- 295 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~------------------------~~~~v~~~~l-~~~~~g~~~~----- 295 (473)
.+.++++||+||+|+||+++|.++|..+-+ .+..+.+..- ..-.+.+.+.
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~~I~idqiR~l~~~~ 100 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGKSSLGVDAVREVTEKL 100 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccCCHHHHHHHHHHH
Confidence 355789999999999999999999997632 1222221100 0001111111
Q ss_pred ------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCC
Q 012000 296 ------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 296 ------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P 369 (473)
.-..|+.||+.+ .......+.||+.++ .++.++++|.+|+.++.|.|.+++||.. +.|+.|
T Consensus 101 ~~~~~~g~~kV~iI~~ae--------~m~~~AaNaLLKtLE----EPp~~t~fiL~t~~~~~lLpTIrSRCq~-~~~~~~ 167 (334)
T PRK07993 101 YEHARLGGAKVVWLPDAA--------LLTDAAANALLKTLE----EPPENTWFFLACREPARLLATLRSRCRL-HYLAPP 167 (334)
T ss_pred hhccccCCceEEEEcchH--------hhCHHHHHHHHHHhc----CCCCCeEEEEEECChhhChHHHHhcccc-ccCCCC
Confidence 113566788773 334456788999988 5677799999999999999999999985 799999
Q ss_pred cHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHH
Q 012000 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGS 407 (473)
Q Consensus 370 ~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~ 407 (473)
+.++....+... .+ ++......++..+.|-.+.
T Consensus 168 ~~~~~~~~L~~~---~~--~~~~~a~~~~~la~G~~~~ 200 (334)
T PRK07993 168 PEQYALTWLSRE---VT--MSQDALLAALRLSAGAPGA 200 (334)
T ss_pred CHHHHHHHHHHc---cC--CCHHHHHHHHHHcCCCHHH
Confidence 988877766532 12 3455666777777774443
No 209
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=98.93 E-value=1.3e-08 Score=105.29 Aligned_cols=189 Identities=20% Similarity=0.288 Sum_probs=124.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
.-..+|++|+|.......+.+.+.. ....+..|||.|.+||||..+|++|-+.. +.+|+.++|..+-
T Consensus 239 ~a~y~f~~Iig~S~~m~~~~~~akr----------~A~tdstVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiP 308 (560)
T COG3829 239 KAKYTFDDIIGESPAMLRVLELAKR----------IAKTDSTVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIP 308 (560)
T ss_pred ccccchhhhccCCHHHHHHHHHHHh----------hcCCCCcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCC
Confidence 3457899999999988888877742 33446789999999999999999998765 6899999998663
Q ss_pred hh-----hhhh----------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-----CCC--CCC
Q 012000 287 SK-----WVGE----------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-----TSN--PND 338 (473)
Q Consensus 287 ~~-----~~g~----------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-----~~~--~~~ 338 (473)
.. .+|- .+..-...+++||| ++..-.+...||..+..- ... .+-
T Consensus 309 e~LlESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEI--------gempl~LQaKLLRVLQEkei~rvG~t~~~~v 380 (560)
T COG3829 309 ETLLESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEI--------GEMPLPLQAKLLRVLQEKEIERVGGTKPIPV 380 (560)
T ss_pred HHHHHHHHhCcCCccccccccCCCCcceeeccCCeEEehhh--------ccCCHHHHHHHHHHHhhceEEecCCCCceee
Confidence 32 1221 11122345569999 444555666676655422 111 123
Q ss_pred cEEEEeecCCCCCCCHHHhc-cccc-------ccccCCCcHHHHH----HHHHHHhc----cCC--C-CCChhhHHHHHH
Q 012000 339 LVIVMGATNKPQELDDAVLR-RLVK-------RIYVPLPDENVRR----LLLKHKLK----GQA--F-SLPGGDLERLVR 399 (473)
Q Consensus 339 ~v~vI~tTn~~~~Ld~al~r-Rf~~-------~i~~~~P~~~~r~----~il~~~l~----~~~--~-~l~~~~l~~La~ 399 (473)
.|.||+|||+ .|..++.. +|.. ++.+..|...+|. .|..+++. +.+ + .++++.+..|.+
T Consensus 381 DVRIIAATN~--nL~~~i~~G~FReDLYYRLNV~~i~iPPLReR~eDI~~L~~~Fl~k~s~~~~~~v~~ls~~a~~~L~~ 458 (560)
T COG3829 381 DVRIIAATNR--NLEKMIAEGTFREDLYYRLNVIPITIPPLRERKEDIPLLAEYFLDKFSRRYGRNVKGLSPDALALLLR 458 (560)
T ss_pred EEEEEeccCc--CHHHHHhcCcchhhheeeeceeeecCCCcccCcchHHHHHHHHHHHHHHHcCCCcccCCHHHHHHHHh
Confidence 4899999996 45455544 4432 2456667665553 23333333 222 2 267888888887
Q ss_pred HcCCCCHHHHHHHHHHHHH
Q 012000 400 ETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 400 ~t~g~s~~dL~~l~~~A~~ 418 (473)
..+--+-++|.+++.++..
T Consensus 459 y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 459 YDWPGNVRELENVIERAVN 477 (560)
T ss_pred CCCCchHHHHHHHHHHHHh
Confidence 7554488999999999986
No 210
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=98.93 E-value=4.7e-08 Score=97.80 Aligned_cols=139 Identities=14% Similarity=0.105 Sum_probs=92.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCc------------------------EEEEecCccchhhhhhhhh-------
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------FFNVSASSLTSKWVGEGEK------- 295 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~------------------------~~~v~~~~l~~~~~g~~~~------- 295 (473)
+.++++||+||+|+||+++|+++|+.+.+. ++.+.+.+-..-.+.+.+.
T Consensus 22 rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I~id~iR~l~~~~~~ 101 (325)
T PRK06871 22 LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDIGVDQVREINEKVSQ 101 (325)
T ss_pred CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCCCHHHHHHHHHHHhh
Confidence 446799999999999999999999976321 2222211000001111111
Q ss_pred ----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcH
Q 012000 296 ----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDE 371 (473)
Q Consensus 296 ----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~ 371 (473)
.-..|+.||+.+ .......+.||+.++ .++.++++|.+|+.++.|.|.+++||.. +.|++|+.
T Consensus 102 ~~~~g~~KV~iI~~a~--------~m~~~AaNaLLKtLE----EPp~~~~fiL~t~~~~~llpTI~SRC~~-~~~~~~~~ 168 (325)
T PRK06871 102 HAQQGGNKVVYIQGAE--------RLTEAAANALLKTLE----EPRPNTYFLLQADLSAALLPTIYSRCQT-WLIHPPEE 168 (325)
T ss_pred ccccCCceEEEEechh--------hhCHHHHHHHHHHhc----CCCCCeEEEEEECChHhCchHHHhhceE-EeCCCCCH
Confidence 113566788873 334556788999888 5677789999999999999999999976 78988888
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHcCC
Q 012000 372 NVRRLLLKHKLKGQAFSLPGGDLERLVRETEG 403 (473)
Q Consensus 372 ~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g 403 (473)
++....+..... .+...+..++..+.|
T Consensus 169 ~~~~~~L~~~~~-----~~~~~~~~~~~l~~g 195 (325)
T PRK06871 169 QQALDWLQAQSS-----AEISEILTALRINYG 195 (325)
T ss_pred HHHHHHHHHHhc-----cChHHHHHHHHHcCC
Confidence 887777665421 123344555555665
No 211
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.6e-08 Score=97.90 Aligned_cols=204 Identities=22% Similarity=0.311 Sum_probs=122.9
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhc-----CCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhh
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTG-----LRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVG 291 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~-----~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g 291 (473)
|+|++.+|+.|.=+|... +..+... .--...+|||.||.|||||+||+.+|+.++.||-.-++..|.. .|+|
T Consensus 63 VIGQe~AKKvLsVAVYNH--YKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 63 VIGQEQAKKVLSVAVYNH--YKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred eecchhhhceeeeeehhH--HHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 689999888876555321 1111111 1112367999999999999999999999999999999888754 4677
Q ss_pred hhh----------------hhhcceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCC---------C----
Q 012000 292 EGE----------------KLVRTLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSN---------P---- 336 (473)
Q Consensus 292 ~~~----------------~~~~~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~---------~---- 336 (473)
+-- +.-+.+++||||+...... .+-....+...||+.++|-..+ +
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 642 3336788899997643221 1222345678899999876321 1
Q ss_pred ----CCcEEEEeecC----------------------C-----------------CC-----CCCHHHhcccccccccCC
Q 012000 337 ----NDLVIVMGATN----------------------K-----------------PQ-----ELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 337 ----~~~v~vI~tTn----------------------~-----------------~~-----~Ld~al~rRf~~~i~~~~ 368 (473)
..++++|+..- . |+ -|-|.+..|+..+..+..
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 12355554310 0 00 123555667766666777
Q ss_pred CcHHHHHHHHH-----------HHhccC--CCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 369 PDENVRRLLLK-----------HKLKGQ--AFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 369 P~~~~r~~il~-----------~~l~~~--~~~l~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
.+.++...||. .++.-. .+.++++.+..+|+.+- +--.+-|+.++.....-..-+
T Consensus 301 Lde~aLv~ILtePkNAlvKQYq~Lf~~d~V~L~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~lld~Mfe 370 (408)
T COG1219 301 LDEDALVQILTEPKNALVKQYQKLFEMDGVELEFTEEALKAIAKKAIERKTGARGLRSIIEELLLDVMFE 370 (408)
T ss_pred cCHHHHHHHHhcccHHHHHHHHHHhcccCceEEEcHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhh
Confidence 77777766654 122222 23346677777776422 222456777776665544443
No 212
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=98.91 E-value=5.8e-08 Score=107.12 Aligned_cols=156 Identities=13% Similarity=0.146 Sum_probs=90.2
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhh---------cCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-------CcEEEE
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFT---------GLRRPARGLLLFGPPGNGKTMLAKAVASESQ-------ATFFNV 280 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~---------~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-------~~~~~v 280 (473)
.|.|.+.+|+.|.-.+.--.....-+. ...+...+|||+|+||||||.+|+++++... .++..+
T Consensus 451 ~I~G~e~vK~ailL~L~gG~~k~~~~~~~~dg~~~~~~iRgdihVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~v 530 (915)
T PTZ00111 451 SIKARNNVKIGLLCQLFSGNKNSSDFNKSPDACYKVDNFRGIINVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSV 530 (915)
T ss_pred eEECCHHHHHHHHHHHhcCCccccccccccccccccccccCCceEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccc
Confidence 578899999888655432211000000 0012234899999999999999999998542 334443
Q ss_pred ecCccch-------hhh---hhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcC---------cCCCCCCcEE
Q 012000 281 SASSLTS-------KWV---GEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDG---------VTSNPNDLVI 341 (473)
Q Consensus 281 ~~~~l~~-------~~~---g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg---------~~~~~~~~v~ 341 (473)
.+..... .|. |.....-..++.|||++.. .......|+..|+. +...-+.++.
T Consensus 531 gLTa~~~~~d~~tG~~~le~GaLvlAdgGtL~IDEidkm--------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~r 602 (915)
T PTZ00111 531 GLTASIKFNESDNGRAMIQPGAVVLANGGVCCIDELDKC--------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETA 602 (915)
T ss_pred cccchhhhcccccCcccccCCcEEEcCCCeEEecchhhC--------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeE
Confidence 3332211 111 1111122457779999443 33444555555532 2222245689
Q ss_pred EEeecCCCC-------------CCCHHHhcccccc-cccCCCcHHHHHHHHHH
Q 012000 342 VMGATNKPQ-------------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKH 380 (473)
Q Consensus 342 vI~tTn~~~-------------~Ld~al~rRf~~~-i~~~~P~~~~r~~il~~ 380 (473)
||||+|+.+ .|++++++||+.+ +.++.|+.+.=..|-.+
T Consensus 603 VIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D~~d~~~D~~lA~h 655 (915)
T PTZ00111 603 ILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLDHIDQDTDQLISLS 655 (915)
T ss_pred EEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecCCCChHHHHHHHHH
Confidence 999999853 5689999999864 46677776654444333
No 213
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=98.91 E-value=6.5e-09 Score=107.39 Aligned_cols=187 Identities=23% Similarity=0.308 Sum_probs=123.6
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh-
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK- 288 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~- 288 (473)
..+.+++|...+.++|++.+.. .......||++|++||||..+|++|-... +.||+.++|..+-..
T Consensus 138 ~~~~~liG~S~am~~l~~~i~k----------vA~s~a~VLI~GESGtGKElvAr~IH~~S~R~~~PFVavNcaAip~~l 207 (464)
T COG2204 138 SLGGELVGESPAMQQLRRLIAK----------VAPSDASVLITGESGTGKELVARAIHQASPRAKGPFIAVNCAAIPENL 207 (464)
T ss_pred cccCCceecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCCcHHHHHHHHHhhCcccCCCceeeecccCCHHH
Confidence 4678999999999999988852 33445679999999999999999997765 569999999876332
Q ss_pred ----hhhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhc-----CcCCC--CCCcEEE
Q 012000 289 ----WVGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD-----GVTSN--PNDLVIV 342 (473)
Q Consensus 289 ----~~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld-----g~~~~--~~~~v~v 342 (473)
.+|. .+..-...+++|||..+ ...+...||..+. .+..+ -+-.|.|
T Consensus 208 ~ESELFGhekGAFTGA~~~r~G~fE~A~GGTLfLDEI~~m--------pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRi 279 (464)
T COG2204 208 LESELFGHEKGAFTGAITRRIGRFEQANGGTLFLDEIGEM--------PLELQVKLLRVLQEREFERVGGNKPIKVDVRI 279 (464)
T ss_pred HHHHhhcccccCcCCcccccCcceeEcCCceEEeeccccC--------CHHHHHHHHHHHHcCeeEecCCCcccceeeEE
Confidence 3332 12223456779999443 3445555555443 22111 1224889
Q ss_pred EeecCCCCCCCHHHh---------cccccccccCCCcHHHHH----HHHHHHhc----cC---CCCCChhhHHHHHHHcC
Q 012000 343 MGATNKPQELDDAVL---------RRLVKRIYVPLPDENVRR----LLLKHKLK----GQ---AFSLPGGDLERLVRETE 402 (473)
Q Consensus 343 I~tTn~~~~Ld~al~---------rRf~~~i~~~~P~~~~r~----~il~~~l~----~~---~~~l~~~~l~~La~~t~ 402 (473)
|++||. +|...+. -|+. ++.+..|...+|. .|++++++ .. ...++...+..|.....
T Consensus 280 IaaT~~--dL~~~v~~G~FReDLyyRLn-V~~i~iPpLRER~EDIp~L~~hfl~~~~~~~~~~~~~~s~~a~~~L~~y~W 356 (464)
T COG2204 280 IAATNR--DLEEEVAAGRFREDLYYRLN-VVPLRLPPLRERKEDIPLLAEHFLKRFAAELGRPPKGFSPEALAALLAYDW 356 (464)
T ss_pred EeecCc--CHHHHHHcCCcHHHHHhhhc-cceecCCcccccchhHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCC
Confidence 999986 4444443 3443 3567777776664 34444443 23 23456777777766544
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 012000 403 GYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 403 g~s~~dL~~l~~~A~~~a 420 (473)
--+-++|.+++++++..+
T Consensus 357 PGNVREL~N~ver~~il~ 374 (464)
T COG2204 357 PGNVRELENVVERAVILS 374 (464)
T ss_pred ChHHHHHHHHHHHHHhcC
Confidence 336789999999998775
No 214
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.90 E-value=3.1e-08 Score=104.97 Aligned_cols=197 Identities=16% Similarity=0.219 Sum_probs=114.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe-cCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS-ASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~-~~~ 284 (473)
-++++.|.+.+|++-...-.+.++.++..-+. ...+.+-+||+||||||||++++.+|++++..+.+-. +..
T Consensus 9 W~~ky~P~~~~eLavhkkKv~eV~~wl~~~~~-------~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~ 81 (519)
T PF03215_consen 9 WVEKYAPKTLDELAVHKKKVEEVRSWLEEMFS-------GSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVS 81 (519)
T ss_pred cchhcCCCCHHHhhccHHHHHHHHHHHHHHhc-------cCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCC
Confidence 46789999999999999888899888863211 1223456889999999999999999999987776532 211
Q ss_pred c------chhh----------hhhh----------------------hhhhcceeeeeccccccccCcchHHHHHHHHHH
Q 012000 285 L------TSKW----------VGEG----------------------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFL 326 (473)
Q Consensus 285 l------~~~~----------~g~~----------------------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll 326 (473)
+ ...+ .... ...-+.|+.|||+-.... .....+...|.
T Consensus 82 ~~~~~~~~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~----~~~~~f~~~L~ 157 (519)
T PF03215_consen 82 FRESDNQEDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFH----RDTSRFREALR 157 (519)
T ss_pred ccccccccccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccc----hhHHHHHHHHH
Confidence 0 0000 0000 001234666788732221 11123333333
Q ss_pred HHhcCcCCCCCC-cEEEEee-c------CCCC--------CCCHHHhccc-ccccccCCCcHHHHHHHHHHHhccC----
Q 012000 327 IQFDGVTSNPND-LVIVMGA-T------NKPQ--------ELDDAVLRRL-VKRIYVPLPDENVRRLLLKHKLKGQ---- 385 (473)
Q Consensus 327 ~~ldg~~~~~~~-~v~vI~t-T------n~~~--------~Ld~al~rRf-~~~i~~~~P~~~~r~~il~~~l~~~---- 385 (473)
..+.. ... ++++|.+ + |... .+++.++... ..+|.|.+-........|..++..+
T Consensus 158 ~~l~~----~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i~~I~FNpIa~T~mkKaL~rI~~~E~~~~ 233 (519)
T PF03215_consen 158 QYLRS----SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGITRIKFNPIAPTFMKKALKRILKKEARSS 233 (519)
T ss_pred HHHHc----CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCceEEEecCCCHHHHHHHHHHHHHHHhhhh
Confidence 33331 122 4666666 1 1111 3567776632 2447777766666655566655543
Q ss_pred -C-CCCC--hhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 012000 386 -A-FSLP--GGDLERLVRETEGYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 386 -~-~~l~--~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~ 421 (473)
+ ...+ ...++.|+..+.| ||+.++....+.+.
T Consensus 234 ~~~~~~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 234 SGKNKVPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred cCCccCCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 1 1222 3358899988877 77776666655554
No 215
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=98.89 E-value=7.2e-09 Score=105.91 Aligned_cols=189 Identities=21% Similarity=0.284 Sum_probs=123.9
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK 288 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~ 288 (473)
...+..|||...+..++.+.+.. .......|||.|.+||||..+|++|-+.. ..+|+.+||+.+-..
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~----------VA~Sd~tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPes 288 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEV----------VAKSDSTVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPES 288 (550)
T ss_pred hcccccceecCHHHHHHHHHHHH----------HhcCCCeEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchH
Confidence 45788999999999999988853 23345689999999999999999998766 579999999876332
Q ss_pred -----hhhhh---------------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHh-----cCcCCCC--CCcEE
Q 012000 289 -----WVGEG---------------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF-----DGVTSNP--NDLVI 341 (473)
Q Consensus 289 -----~~g~~---------------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l-----dg~~~~~--~~~v~ 341 (473)
.+|.- +-.-...+++|||.... -.+...||..+ +.+..+. .-.|.
T Consensus 289 LlESELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGelP--------L~lQaKLLRvLQegEieRvG~~r~ikVDVR 360 (550)
T COG3604 289 LLESELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGELP--------LALQAKLLRVLQEGEIERVGGDRTIKVDVR 360 (550)
T ss_pred HHHHHHhcccccccccchhccCcceeecCCCeEechhhccCC--------HHHHHHHHHHHhhcceeecCCCceeEEEEE
Confidence 22221 11223455699994433 33444444433 2222221 12389
Q ss_pred EEeecCCCCCCCHHHhc-cccc-------ccccCCCcHHHHH--------HHHHHHhccC---CCCCChhhHHHHHHHcC
Q 012000 342 VMGATNKPQELDDAVLR-RLVK-------RIYVPLPDENVRR--------LLLKHKLKGQ---AFSLPGGDLERLVRETE 402 (473)
Q Consensus 342 vI~tTn~~~~Ld~al~r-Rf~~-------~i~~~~P~~~~r~--------~il~~~l~~~---~~~l~~~~l~~La~~t~ 402 (473)
||++||+ +|..+++. +|.. ++.+.+|..-+|. .+++.+-... .+.++.+.++.|.....
T Consensus 361 iIAATNR--DL~~~V~~G~FRaDLYyRLsV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~gr~~l~ls~~Al~~L~~y~w 438 (550)
T COG3604 361 VIAATNR--DLEEMVRDGEFRADLYYRLSVFPLELPPLRERPEDIPLLAGYFLEKFRRRLGRAILSLSAEALELLSSYEW 438 (550)
T ss_pred EEeccch--hHHHHHHcCcchhhhhhcccccccCCCCcccCCccHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHcCCC
Confidence 9999997 67677766 4432 1334446555542 2222222222 44668888999888755
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 012000 403 GYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 403 g~s~~dL~~l~~~A~~~a 420 (473)
--+-++|.+++++|+..|
T Consensus 439 PGNVRELen~veRavlla 456 (550)
T COG3604 439 PGNVRELENVVERAVLLA 456 (550)
T ss_pred CCcHHHHHHHHHHHHHHh
Confidence 447899999999999976
No 216
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=98.89 E-value=5.7e-09 Score=95.19 Aligned_cols=103 Identities=22% Similarity=0.318 Sum_probs=69.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC----cEEEEecCccch----h-----hhhhhh----hhhcceeeeecccccc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQA----TFFNVSASSLTS----K-----WVGEGE----KLVRTLFMIDSIMSTR 310 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~----~~~~v~~~~l~~----~-----~~g~~~----~~~~~if~IDei~~~~ 310 (473)
|...+||+||+|||||.+|+++|..+.. +++.++++.+.. . ..+... ..-..|+++|||+...
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa~ 81 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSEGDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKAH 81 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCSHHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGCS
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccccchHHhhhhhhhhcccceeeccchhhhhhHHHhhcc
Confidence 4457999999999999999999999996 999999987765 1 122211 1123488899997755
Q ss_pred c--c-CcchHHHHHHHHHHHHhcCcCCC-------CCCcEEEEeecCCCC
Q 012000 311 M--A-NENDASRRLKSEFLIQFDGVTSN-------PNDLVIVMGATNKPQ 350 (473)
Q Consensus 311 ~--~-~~~~~~~~~~~~ll~~ldg~~~~-------~~~~v~vI~tTn~~~ 350 (473)
. . ..+.....+.+.||+.|++-.-. .-.++++|+|+|--.
T Consensus 82 ~~~~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~~ 131 (171)
T PF07724_consen 82 PSNSGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFGA 131 (171)
T ss_dssp HTTTTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSST
T ss_pred ccccccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEeccccc
Confidence 4 1 22233346778888888643211 124689999998644
No 217
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=98.87 E-value=6.8e-08 Score=104.60 Aligned_cols=52 Identities=33% Similarity=0.495 Sum_probs=44.7
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..|+..|++|+|++++++.|...+.. .++++|+||||||||++|++++..+.
T Consensus 24 ~~~~~~~~~vigq~~a~~~L~~~~~~--------------~~~~l~~G~~G~GKttla~~l~~~l~ 75 (637)
T PRK13765 24 EVPERLIDQVIGQEHAVEVIKKAAKQ--------------RRHVMMIGSPGTGKSMLAKAMAELLP 75 (637)
T ss_pred ccCcccHHHcCChHHHHHHHHHHHHh--------------CCeEEEECCCCCcHHHHHHHHHHHcC
Confidence 34678999999999999999887741 24799999999999999999998764
No 218
>PRK08116 hypothetical protein; Validated
Probab=98.86 E-value=1.3e-08 Score=99.72 Aligned_cols=147 Identities=18% Similarity=0.226 Sum_probs=84.9
Q ss_pred CCCCCCcccccChHH---HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 209 RSPSVKWEDVAGLEK---AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 209 ~~~~~~~~divGl~~---~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
+....+|+++.--+. +...+++++.. |..+.....+++||||||||||+||.++|+++ +.+++.++.
T Consensus 78 ~~~~~tFdnf~~~~~~~~a~~~a~~y~~~-------~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~ 150 (268)
T PRK08116 78 KFRNSTFENFLFDKGSEKAYKIARKYVKK-------FEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNF 150 (268)
T ss_pred HHHhcchhcccCChHHHHHHHHHHHHHHH-------HHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEH
Confidence 445678887753333 33334444321 12222334689999999999999999999986 678888888
Q ss_pred Cccchhhhhh-------h----hhhh--cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 283 SSLTSKWVGE-------G----EKLV--RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 283 ~~l~~~~~g~-------~----~~~~--~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
.+++..+... . ...+ ..++.||+++.... .......|...++..... . ..+|.|||.+
T Consensus 151 ~~ll~~i~~~~~~~~~~~~~~~~~~l~~~dlLviDDlg~e~~------t~~~~~~l~~iin~r~~~-~--~~~IiTsN~~ 221 (268)
T PRK08116 151 PQLLNRIKSTYKSSGKEDENEIIRSLVNADLLILDDLGAERD------TEWAREKVYNIIDSRYRK-G--LPTIVTTNLS 221 (268)
T ss_pred HHHHHHHHHHHhccccccHHHHHHHhcCCCEEEEecccCCCC------CHHHHHHHHHHHHHHHHC-C--CCEEEECCCC
Confidence 7766543211 1 1111 26788999954321 123344555555544322 1 2356677754
Q ss_pred C-C----CCHHHhcccc---cccccCCCcH
Q 012000 350 Q-E----LDDAVLRRLV---KRIYVPLPDE 371 (473)
Q Consensus 350 ~-~----Ld~al~rRf~---~~i~~~~P~~ 371 (473)
. . ++..+.+|+. ..|.++-||.
T Consensus 222 ~~eL~~~~~~ri~sRl~e~~~~v~~~g~d~ 251 (268)
T PRK08116 222 LEELKNQYGKRIYDRILEMCTPVENEGKSY 251 (268)
T ss_pred HHHHHHHHhHHHHHHHHHcCEEEEeeCcCh
Confidence 3 3 4667777752 3355555554
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=98.81 E-value=1.1e-08 Score=88.13 Aligned_cols=116 Identities=25% Similarity=0.336 Sum_probs=67.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCc---EEEEecCccchhhh---------------------hh----hhhhhcce
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSLTSKWV---------------------GE----GEKLVRTL 300 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~---~~~v~~~~l~~~~~---------------------g~----~~~~~~~i 300 (473)
...++|+||||||||++++.+|..+... ++.+++......+. .. .+.....+
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 81 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPDV 81 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 4679999999999999999999999765 78777765432110 00 11111278
Q ss_pred eeeeccccccccCcchHHHHHH-HHHHHHhcCcCCCCCCcEEEEeecCC-CCCCCHHHhcccccccccCCC
Q 012000 301 FMIDSIMSTRMANENDASRRLK-SEFLIQFDGVTSNPNDLVIVMGATNK-PQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 301 f~IDei~~~~~~~~~~~~~~~~-~~ll~~ldg~~~~~~~~v~vI~tTn~-~~~Ld~al~rRf~~~i~~~~P 369 (473)
+.|||+................ ....... .......+|+++|. ....+..+.+|++..+.++.+
T Consensus 82 iiiDei~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQEALLLLLEELRLLLLL-----KSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHHHHHHHhhhhhHHHHHH-----HhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 8899996554322111100000 0001111 11233678888886 445556666688877776554
No 220
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=98.81 E-value=8.2e-08 Score=96.71 Aligned_cols=59 Identities=12% Similarity=0.188 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHH
Q 012000 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHK 381 (473)
Q Consensus 318 ~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~ 381 (473)
.....+.||+.++ .++.++++|.+|+.++.|.|.+++||. .+.|++|+.++..+.+...
T Consensus 145 ~~~AaNaLLKtLE----EPp~~t~fiL~t~~~~~LLpTI~SRcq-~i~~~~~~~~~~~~~L~~~ 203 (342)
T PRK06964 145 NVAAANALLKTLE----EPPPGTVFLLVSARIDRLLPTILSRCR-QFPMTVPAPEAAAAWLAAQ 203 (342)
T ss_pred CHHHHHHHHHHhc----CCCcCcEEEEEECChhhCcHHHHhcCE-EEEecCCCHHHHHHHHHHc
Confidence 3455688999988 567779999999999999999999995 5899999998888877653
No 221
>PRK09862 putative ATP-dependent protease; Provisional
Probab=98.80 E-value=1e-07 Score=100.45 Aligned_cols=137 Identities=23% Similarity=0.322 Sum_probs=89.2
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC----CcEEEEe------c
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVS------A 282 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~----~~~~~v~------~ 282 (473)
..|.++.|...+++.+.-.+ ....+++|+||||||||+|++.++..+. -..+++. +
T Consensus 188 ~d~~~v~Gq~~~~~al~laa--------------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g 253 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA--------------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVN 253 (506)
T ss_pred cCeEEEECcHHHHhhhheec--------------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhc
Confidence 37889999988877754222 2246899999999999999999987542 1111111 0
Q ss_pred C----------------------ccch----hhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC---
Q 012000 283 S----------------------SLTS----KWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT--- 333 (473)
Q Consensus 283 ~----------------------~l~~----~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~--- 333 (473)
. .++. ...|.....-+.++++||+ +.........|+..|+.-.
T Consensus 254 ~~~~~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A~gGvLfLDEi--------~e~~~~~~~~L~~~LE~g~v~I 325 (506)
T PRK09862 254 AESVQKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLAHNGVLFLDEL--------PEFERRTLDALREPIESGQIHL 325 (506)
T ss_pred cccccCCcCCCCccCCCccchHHHHhCCCceehhhHhhhccCCEEecCCc--------hhCCHHHHHHHHHHHHcCcEEE
Confidence 0 0110 1123334445678889999 4445566677776663221
Q ss_pred ------CCCCCcEEEEeecCCCC---------------------CCCHHHhcccccccccCCCcH
Q 012000 334 ------SNPNDLVIVMGATNKPQ---------------------ELDDAVLRRLVKRIYVPLPDE 371 (473)
Q Consensus 334 ------~~~~~~v~vI~tTn~~~---------------------~Ld~al~rRf~~~i~~~~P~~ 371 (473)
...+.++.+|+|+|... .|..++++||+..+.++.|+.
T Consensus 326 ~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~ 390 (506)
T PRK09862 326 SRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPP 390 (506)
T ss_pred ecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCH
Confidence 11234689999999753 478899999999999998754
No 222
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=98.79 E-value=9e-08 Score=100.64 Aligned_cols=188 Identities=17% Similarity=0.204 Sum_probs=119.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhh
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV 290 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~ 290 (473)
.+.+++|.....+.+.+.+.. ......+++|+|++||||+++|+++.... +.+|+.++|..+...++
T Consensus 137 ~~~~lig~s~~~~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~ 206 (445)
T TIGR02915 137 ALRGLITSSPGMQKICRTIEK----------IAPSDITVLLLGESGTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL 206 (445)
T ss_pred cccceeecCHHHHHHHHHHHH----------HhCCCCCEEEECCCCcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH
Confidence 456788877777777665531 11224579999999999999999998765 46899999987643322
Q ss_pred hh--------------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-------CCCCCcEEEE
Q 012000 291 GE--------------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVIVM 343 (473)
Q Consensus 291 g~--------------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-------~~~~~~v~vI 343 (473)
.. .+..-...++||+++. ........|+..++.-. ......+.+|
T Consensus 207 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~--------l~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii 278 (445)
T TIGR02915 207 ESELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGD--------LPLNLQAKLLRFLQERVIERLGGREEIPVDVRIV 278 (445)
T ss_pred HHHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhh--------CCHHHHHHHHHHHhhCeEEeCCCCceeeeceEEE
Confidence 11 1112245667888843 33445555555554211 0111247888
Q ss_pred eecCCC-------CCCCHHHhcccccccccCCCcHHHHHH----HHHHHhcc----C---CCCCChhhHHHHHHHcCCCC
Q 012000 344 GATNKP-------QELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG----Q---AFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 344 ~tTn~~-------~~Ld~al~rRf~~~i~~~~P~~~~r~~----il~~~l~~----~---~~~l~~~~l~~La~~t~g~s 405 (473)
++|+.. ..+.+.+..|+.. +.+.+|...+|.+ |+.+++.. . ...++++.+..|.....--+
T Consensus 279 ~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 357 (445)
T TIGR02915 279 CATNQDLKRMIAEGTFREDLFYRIAE-ISITIPPLRSRDGDAVLLANAFLERFARELKRKTKGFTDDALRALEAHAWPGN 357 (445)
T ss_pred EecCCCHHHHHHcCCccHHHHHHhcc-ceecCCCchhchhhHHHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHhCCCCCh
Confidence 888764 2455556666643 5566666666643 44444432 1 24568889999988776558
Q ss_pred HHHHHHHHHHHHHHh
Q 012000 406 GSDLQALCEEAAMMP 420 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a 420 (473)
.++|++++++|+..+
T Consensus 358 vreL~~~i~~a~~~~ 372 (445)
T TIGR02915 358 VRELENKVKRAVIMA 372 (445)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999988654
No 223
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=98.79 E-value=2.4e-07 Score=92.48 Aligned_cols=136 Identities=17% Similarity=0.127 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-----------------------cE
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-----------------------TF 277 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~-----------------------~~ 277 (473)
+.++.+.|...+. ..+.++++||+||.|+||+++|+++|..+-+ .|
T Consensus 8 l~~~~~~l~~~~~-----------~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~ 76 (319)
T PRK06090 8 LVPVWQNWKAGLD-----------AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDL 76 (319)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCE
Confidence 3455666666553 3445679999999999999999999987632 23
Q ss_pred EEEecCcc-chhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEee
Q 012000 278 FNVSASSL-TSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA 345 (473)
Q Consensus 278 ~~v~~~~l-~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~t 345 (473)
+.+.+..- ..-.+.+.+. .-..|+.||+.+ .......+.||+.++ .++.++++|.+
T Consensus 77 ~~i~p~~~~~~I~vdqiR~l~~~~~~~~~~~~~kV~iI~~ae--------~m~~~AaNaLLKtLE----EPp~~t~fiL~ 144 (319)
T PRK06090 77 HVIKPEKEGKSITVEQIRQCNRLAQESSQLNGYRLFVIEPAD--------AMNESASNALLKTLE----EPAPNCLFLLV 144 (319)
T ss_pred EEEecCcCCCcCCHHHHHHHHHHHhhCcccCCceEEEecchh--------hhCHHHHHHHHHHhc----CCCCCeEEEEE
Confidence 33322110 0000111111 113566777773 334556788999888 56777999999
Q ss_pred cCCCCCCCHHHhcccccccccCCCcHHHHHHHHHH
Q 012000 346 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKH 380 (473)
Q Consensus 346 Tn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~ 380 (473)
|+.++.|-|.+++||.. +.|+.|+.++..+.+..
T Consensus 145 t~~~~~lLpTI~SRCq~-~~~~~~~~~~~~~~L~~ 178 (319)
T PRK06090 145 THNQKRLLPTIVSRCQQ-WVVTPPSTAQAMQWLKG 178 (319)
T ss_pred ECChhhChHHHHhccee-EeCCCCCHHHHHHHHHH
Confidence 99999999999999975 89999998888776654
No 224
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=98.73 E-value=6e-08 Score=88.19 Aligned_cols=124 Identities=24% Similarity=0.352 Sum_probs=74.1
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh-----h
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-----W 289 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~-----~ 289 (473)
|+|.....+.+.+.+... ...+.+|||+|++||||+++|++|-+.. +.+|+.|+|+.+... .
T Consensus 1 liG~s~~m~~~~~~~~~~----------a~~~~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~~e~~L 70 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRA----------ASSDLPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEELLESEL 70 (168)
T ss_dssp SS--SHHHHHHHHHHHHH----------TTSTS-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHHHHHHH
T ss_pred CEeCCHHHHHHHHHHHHH----------hCCCCCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcchhhhhh
Confidence 467666667776666422 2234679999999999999999998865 579999999876433 2
Q ss_pred hhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----CC--CCCcEEEEeecC
Q 012000 290 VGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN--PNDLVIVMGATN 347 (473)
Q Consensus 290 ~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~~--~~~~v~vI~tTn 347 (473)
+|. .+..-...++||+|+ .....+...|+..++.-. .. ..-.+.||++|+
T Consensus 71 FG~~~~~~~~~~~~~~G~l~~A~~GtL~Ld~I~--------~L~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~st~ 142 (168)
T PF00158_consen 71 FGHEKGAFTGARSDKKGLLEQANGGTLFLDEIE--------DLPPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIASTS 142 (168)
T ss_dssp HEBCSSSSTTTSSEBEHHHHHTTTSEEEEETGG--------GS-HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEEEES
T ss_pred hccccccccccccccCCceeeccceEEeecchh--------hhHHHHHHHHHHHHhhchhccccccccccccceEEeecC
Confidence 222 223335677799993 444556666666665211 11 112589999998
Q ss_pred CCCCCCHHHhc-ccc
Q 012000 348 KPQELDDAVLR-RLV 361 (473)
Q Consensus 348 ~~~~Ld~al~r-Rf~ 361 (473)
. +|...+.. +|.
T Consensus 143 ~--~l~~~v~~g~fr 155 (168)
T PF00158_consen 143 K--DLEELVEQGRFR 155 (168)
T ss_dssp S---HHHHHHTTSS-
T ss_pred c--CHHHHHHcCCCh
Confidence 5 44444444 554
No 225
>PRK12377 putative replication protein; Provisional
Probab=98.72 E-value=4.3e-08 Score=94.52 Aligned_cols=125 Identities=19% Similarity=0.166 Sum_probs=72.3
Q ss_pred cccCCCCCCccccc----ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEE
Q 012000 206 IVDRSPSVKWEDVA----GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFF 278 (473)
Q Consensus 206 iv~~~~~~~~~div----Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~ 278 (473)
+-......+|+++. |...+...++.++... . ....+++|+||||||||+||.|||+++ +..++
T Consensus 64 i~~~~~~~tFdnf~~~~~~~~~a~~~a~~~a~~~-------~---~~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~ 133 (248)
T PRK12377 64 IQPLHRKCSFANYQVQNDGQRYALSQAKSIADEL-------M---TGCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVI 133 (248)
T ss_pred CCcccccCCcCCcccCChhHHHHHHHHHHHHHHH-------H---hcCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeE
Confidence 33445667788775 3333444444444311 1 123589999999999999999999987 56677
Q ss_pred EEecCccchhhhhh-----h-hhh-----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 279 NVSASSLTSKWVGE-----G-EKL-----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 279 ~v~~~~l~~~~~g~-----~-~~~-----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
.++..+++...... . ... -..++.|||++..+.. .. ....|...++.-..+ . .-+|.|||
T Consensus 134 ~i~~~~l~~~l~~~~~~~~~~~~~l~~l~~~dLLiIDDlg~~~~s---~~---~~~~l~~ii~~R~~~-~--~ptiitSN 204 (248)
T PRK12377 134 VVTVPDVMSRLHESYDNGQSGEKFLQELCKVDLLVLDEIGIQRET---KN---EQVVLNQIIDRRTAS-M--RSVGMLTN 204 (248)
T ss_pred EEEHHHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCCCCC---HH---HHHHHHHHHHHHHhc-C--CCEEEEcC
Confidence 77777765533211 1 111 1357889999654421 12 233444455443321 1 22455788
Q ss_pred CC
Q 012000 348 KP 349 (473)
Q Consensus 348 ~~ 349 (473)
..
T Consensus 205 l~ 206 (248)
T PRK12377 205 LN 206 (248)
T ss_pred CC
Confidence 64
No 226
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=98.71 E-value=4.1e-07 Score=88.99 Aligned_cols=208 Identities=21% Similarity=0.233 Sum_probs=118.0
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecCcc
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASSL 285 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~~l 285 (473)
=+..+|...+++.|..+-.+. ..|. ..-..++||+|++|.|||++++.++... ..+++.+.+..-
T Consensus 33 ~~rWIgY~~A~~~L~~L~~Ll-~~P~-----~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~ 106 (302)
T PF05621_consen 33 ADRWIGYPRAKEALDRLEELL-EYPK-----RHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPE 106 (302)
T ss_pred cCCeecCHHHHHHHHHHHHHH-hCCc-----ccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCC
Confidence 344577777666665544321 1111 1113589999999999999999998754 246666654321
Q ss_pred ch--h-h----------------hhhhhh--------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 286 TS--K-W----------------VGEGEK--------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 286 ~~--~-~----------------~g~~~~--------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
-+ . | ....+. .-..++.|||++...... .+-..++++.+..+.+.-.-
T Consensus 107 p~~~~~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs-----~~~qr~~Ln~LK~L~NeL~i 181 (302)
T PF05621_consen 107 PDERRFYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGS-----YRKQREFLNALKFLGNELQI 181 (302)
T ss_pred CChHHHHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhccc-----HHHHHHHHHHHHHHhhccCC
Confidence 10 0 0 000011 112466799996643221 12233444444444333333
Q ss_pred cEEEEeecCCCC--CCCHHHhcccccccccCCC-cHHHHHHHHHHHhccCCCC----CC-hhhHHHHHHHcCCCCHHHHH
Q 012000 339 LVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLP-DENVRRLLLKHKLKGQAFS----LP-GGDLERLVRETEGYSGSDLQ 410 (473)
Q Consensus 339 ~v~vI~tTn~~~--~Ld~al~rRf~~~i~~~~P-~~~~r~~il~~~l~~~~~~----l~-~~~l~~La~~t~g~s~~dL~ 410 (473)
+++.+||-.-.. .-|+.+.+||.. +.+|.. ..++...++..+-...++. +. ......|-.+|+|. -++|.
T Consensus 182 piV~vGt~~A~~al~~D~QLa~RF~~-~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S~l~~~~la~~i~~~s~G~-iG~l~ 259 (302)
T PF05621_consen 182 PIVGVGTREAYRALRTDPQLASRFEP-FELPRWELDEEFRRLLASFERALPLRKPSNLASPELARRIHERSEGL-IGELS 259 (302)
T ss_pred CeEEeccHHHHHHhccCHHHHhccCC-ccCCCCCCCcHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHcCCc-hHHHH
Confidence 456666542222 347899999976 455553 3345555666654433221 23 34457788889994 56888
Q ss_pred HHHHHHHHHhHHHhcccccccccccCCCCcHHHHHH
Q 012000 411 ALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQK 446 (473)
Q Consensus 411 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~ 446 (473)
.++..|+..|++.-. ..||.+.+..
T Consensus 260 ~ll~~aA~~AI~sG~-----------E~It~~~l~~ 284 (302)
T PF05621_consen 260 RLLNAAAIAAIRSGE-----------ERITREILDK 284 (302)
T ss_pred HHHHHHHHHHHhcCC-----------ceecHHHHhh
Confidence 999999999988633 3466666554
No 227
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=98.69 E-value=1.9e-07 Score=98.91 Aligned_cols=188 Identities=21% Similarity=0.255 Sum_probs=119.0
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhh
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV 290 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~ 290 (473)
.+.+++|.....+.+.+.+.. .......+|++|++||||+++|+++.... +.+|+.++|..+...++
T Consensus 136 ~~~~lig~s~~~~~l~~~~~~----------~~~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~~ 205 (469)
T PRK10923 136 PTTDIIGEAPAMQDVFRIIGR----------LSRSSISVLINGESGTGKELVAHALHRHSPRAKAPFIALNMAAIPKDLI 205 (469)
T ss_pred ccccceecCHHHHHHHHHHHH----------HhccCCeEEEEeCCCCcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHHH
Confidence 467889988777777666541 12224579999999999999999998875 57999999987743322
Q ss_pred -----hh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----CC--CCCcEEEE
Q 012000 291 -----GE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN--PNDLVIVM 343 (473)
Q Consensus 291 -----g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~~--~~~~v~vI 343 (473)
|. .+..-...++||+++.. .......|+..++.-. .. ..-.+.+|
T Consensus 206 ~~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l--------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii 277 (469)
T PRK10923 206 ESELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM--------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRII 277 (469)
T ss_pred HHHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC--------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEE
Confidence 21 11122345668888433 3344555665554221 00 01236788
Q ss_pred eecCCC-------CCCCHHHhcccccccccCCCcHHHH----HHHHHHHhcc----CC---CCCChhhHHHHHHHcCCCC
Q 012000 344 GATNKP-------QELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLKG----QA---FSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 344 ~tTn~~-------~~Ld~al~rRf~~~i~~~~P~~~~r----~~il~~~l~~----~~---~~l~~~~l~~La~~t~g~s 405 (473)
+||+.. ..+.+.+..||.. +.+..|...+| ..|+.+++.. .+ ..++++.+..|.....--+
T Consensus 278 ~~~~~~l~~~~~~~~~~~~L~~~l~~-~~i~~PpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 356 (469)
T PRK10923 278 AATHQNLEQRVQEGKFREDLFHRLNV-IRVHLPPLRERREDIPRLARHFLQVAARELGVEAKLLHPETEAALTRLAWPGN 356 (469)
T ss_pred EeCCCCHHHHHHcCCchHHHHHHhcc-eeecCCCcccchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCCh
Confidence 888753 2456777777742 34444444333 4455555532 22 2467888999988876668
Q ss_pred HHHHHHHHHHHHHHh
Q 012000 406 GSDLQALCEEAAMMP 420 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a 420 (473)
-++|+++++.++..+
T Consensus 357 v~eL~~~i~~~~~~~ 371 (469)
T PRK10923 357 VRQLENTCRWLTVMA 371 (469)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999987654
No 228
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=98.69 E-value=2.3e-07 Score=97.90 Aligned_cols=188 Identities=20% Similarity=0.262 Sum_probs=116.6
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhh
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV 290 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~ 290 (473)
.+.+++|.......+.+.+.. .......+|++|++||||+++|+++.... +.+|+.++|..+...+.
T Consensus 141 ~~~~ii~~S~~~~~~~~~~~~----------~a~~~~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~ 210 (457)
T PRK11361 141 QWGHILTNSPAMMDICKDTAK----------IALSQASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL 210 (457)
T ss_pred cccceecccHHHhHHHHHHHH----------HcCCCcEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH
Confidence 445677766665555554431 22224579999999999999999997764 57999999987644321
Q ss_pred -----hh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C--CCCCcEEEE
Q 012000 291 -----GE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDLVIVM 343 (473)
Q Consensus 291 -----g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~--~~~~~v~vI 343 (473)
|. .+..-..+++||+++.. .......|+..++.-. . .....+.+|
T Consensus 211 ~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l--------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii 282 (457)
T PRK11361 211 ESELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM--------PLVLQAKLLRILQEREFERIGGHQTIKVDIRII 282 (457)
T ss_pred HHHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC--------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEEE
Confidence 11 11122356779998443 3344555665554221 0 111247889
Q ss_pred eecCCCC-------CCCHHHhcccccccccCCCcHHHHHH----HHHHHhcc----C---CCCCChhhHHHHHHHcCCCC
Q 012000 344 GATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRRL----LLKHKLKG----Q---AFSLPGGDLERLVRETEGYS 405 (473)
Q Consensus 344 ~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~~----il~~~l~~----~---~~~l~~~~l~~La~~t~g~s 405 (473)
+||+..- .+.+.+..|+.. +.+..|...+|.. |+.+++.. . ...++++.+..|.....--.
T Consensus 283 ~~t~~~l~~~~~~g~~~~~l~~~l~~-~~i~~ppLreR~~di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN 361 (457)
T PRK11361 283 AATNRDLQAMVKEGTFREDLFYRLNV-IHLILPPLRDRREDISLLANHFLQKFSSENQRDIIDIDPMAMSLLTAWSWPGN 361 (457)
T ss_pred EeCCCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHcCCCCCc
Confidence 9997642 344555555543 5566666665542 33444332 1 23467888888888766568
Q ss_pred HHHHHHHHHHHHHHh
Q 012000 406 GSDLQALCEEAAMMP 420 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a 420 (473)
.++|+++++.|+..+
T Consensus 362 v~eL~~~~~~~~~~~ 376 (457)
T PRK11361 362 IRELSNVIERAVVMN 376 (457)
T ss_pred HHHHHHHHHHHHHhC
Confidence 899999999987643
No 229
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.66 E-value=6.6e-07 Score=96.28 Aligned_cols=180 Identities=11% Similarity=0.060 Sum_probs=120.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC--CcEEEEecCccchhhh------------------hhhhhhhcceeeeeccccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSKWV------------------GEGEKLVRTLFMIDSIMST 309 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~v~~~~l~~~~~------------------g~~~~~~~~if~IDei~~~ 309 (473)
.|+||-|++|||||+++++++.-+. .+|..+..+.-....+ |+....-+.|+++||+
T Consensus 26 gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~Ah~GvL~lDe~--- 102 (584)
T PRK13406 26 GGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAEADGGVLVLAMA--- 102 (584)
T ss_pred ceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceeeccCCEEEecCc---
Confidence 5899999999999999999999875 4777655432222222 2223334578899999
Q ss_pred cccCcchHHHHHHHHHHHHhcC---------cCCCCCCcEEEEeecCCC---CCCCHHHhcccccccccCCCcHHHHH--
Q 012000 310 RMANENDASRRLKSEFLIQFDG---------VTSNPNDLVIVMGATNKP---QELDDAVLRRLVKRIYVPLPDENVRR-- 375 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~ll~~ldg---------~~~~~~~~v~vI~tTn~~---~~Ld~al~rRf~~~i~~~~P~~~~r~-- 375 (473)
+.....++..|+..|+. .....+.+++||++-|.. ..|.++++.||+..+.++.|+..+..
T Consensus 103 -----n~~~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~~~~~~~~~~ 177 (584)
T PRK13406 103 -----ERLEPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDGLALRDAREI 177 (584)
T ss_pred -----ccCCHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCCCChHHhccc
Confidence 67778888999988852 222334568899874432 35899999999999999987754321
Q ss_pred -----HHH--HHHhccCCCCCChhhHHHHHHHcC--CC-CHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHH
Q 012000 376 -----LLL--KHKLKGQAFSLPGGDLERLVRETE--GY-SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQ 445 (473)
Q Consensus 376 -----~il--~~~l~~~~~~l~~~~l~~La~~t~--g~-s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~ 445 (473)
.|. +..+ ..+.+++..+.+++..+. |. |.+--..+++.|...|.-+ +...|+.+|+.
T Consensus 178 ~~~~~~I~~AR~rl--~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~AaL~-----------Gr~~V~~~dv~ 244 (584)
T PRK13406 178 PIDADDIAAARARL--PAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAALA-----------GRTAVEEEDLA 244 (584)
T ss_pred CCCHHHHHHHHHHH--ccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHHHc-----------CCCCCCHHHHH
Confidence 222 2222 246677888887766544 43 5555556666665555332 33568888888
Q ss_pred HHHHh
Q 012000 446 KAMAV 450 (473)
Q Consensus 446 ~al~~ 450 (473)
.|+.-
T Consensus 245 ~Aa~l 249 (584)
T PRK13406 245 LAARL 249 (584)
T ss_pred HHHHH
Confidence 88764
No 230
>PRK07952 DNA replication protein DnaC; Validated
Probab=98.66 E-value=1.3e-07 Score=91.05 Aligned_cols=95 Identities=23% Similarity=0.288 Sum_probs=60.0
Q ss_pred cccCCCCCCcccccC-hHH---HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEE
Q 012000 206 IVDRSPSVKWEDVAG-LEK---AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFF 278 (473)
Q Consensus 206 iv~~~~~~~~~divG-l~~---~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~ 278 (473)
+.+.++..+|+++.- .+. +...+.+++.. + .....+++|+||||||||+|+.+||.++ +..++
T Consensus 62 i~~~~~~~tFdnf~~~~~~q~~al~~a~~~~~~-------~---~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~ 131 (244)
T PRK07952 62 IRPLHQNCSFENYRVECEGQMNALSKARQYVEE-------F---DGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVL 131 (244)
T ss_pred CCccccCCccccccCCCchHHHHHHHHHHHHHh-------h---ccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEE
Confidence 444556778888753 222 33344433321 1 1113589999999999999999999987 67788
Q ss_pred EEecCccchhhhhh------hh-hh-----hcceeeeecccccc
Q 012000 279 NVSASSLTSKWVGE------GE-KL-----VRTLFMIDSIMSTR 310 (473)
Q Consensus 279 ~v~~~~l~~~~~g~------~~-~~-----~~~if~IDei~~~~ 310 (473)
.++..++....... .. .. -..++.||+++...
T Consensus 132 ~it~~~l~~~l~~~~~~~~~~~~~~l~~l~~~dlLvIDDig~~~ 175 (244)
T PRK07952 132 IITVADIMSAMKDTFSNSETSEEQLLNDLSNVDLLVIDEIGVQT 175 (244)
T ss_pred EEEHHHHHHHHHHHHhhccccHHHHHHHhccCCEEEEeCCCCCC
Confidence 88887776533221 11 11 13577899996654
No 231
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=98.64 E-value=1.5e-07 Score=94.48 Aligned_cols=121 Identities=16% Similarity=0.211 Sum_probs=78.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC-------------------------cEEEEecCcc---ch-----hhhhhh
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQA-------------------------TFFNVSASSL---TS-----KWVGEG 293 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~-------------------------~~~~v~~~~l---~~-----~~~g~~ 293 (473)
+.++++||+||+|+|||++|+++|+.+.+ .|+.+++..- .+ -.+...
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44678999999999999999999997632 2334433110 00 001111
Q ss_pred hh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhccccc
Q 012000 294 EK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVK 362 (473)
Q Consensus 294 ~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~ 362 (473)
+. .-+.|+.||.++ .......+.+++.++... ..+.+|.+|+.+..+.+.+++||..
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~--------~Ld~~a~naLLk~LEep~----~~~~~Ilvth~~~~ll~ti~SRc~~ 166 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAE--------SMNLQAANSLLKVLEEPP----PQVVFLLVSHAADKVLPTIKSRCRK 166 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechh--------hCCHHHHHHHHHHHHhCc----CCCEEEEEeCChHhChHHHHHHhhh
Confidence 11 113455566662 333445667777776442 2356777899899999999999965
Q ss_pred ccccCCCcHHHHHHHHHH
Q 012000 363 RIYVPLPDENVRRLLLKH 380 (473)
Q Consensus 363 ~i~~~~P~~~~r~~il~~ 380 (473)
+.|+.|+.++....+..
T Consensus 167 -~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 167 -MVLPAPSHEEALAYLRE 183 (325)
T ss_pred -hcCCCCCHHHHHHHHHh
Confidence 88899988887766653
No 232
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.62 E-value=2.1e-07 Score=100.36 Aligned_cols=225 Identities=21% Similarity=0.234 Sum_probs=127.2
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe-cC---cc---
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS-AS---SL--- 285 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~-~~---~l--- 285 (473)
.-.|.|++++|++|.-.+... .+...... .+-.-+|||.|-||||||.|.+.+++-+...++.-. ++ .|
T Consensus 285 aPsIyG~e~VKkAilLqLfgG--v~k~~~~g~~iRGDInILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAa 362 (682)
T COG1241 285 APSIYGHEDVKKAILLQLFGG--VKKNLPDGTRIRGDIHILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAA 362 (682)
T ss_pred cccccCcHHHHHHHHHHhcCC--CcccCCCCcccccceeEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeE
Confidence 346789999999987555321 11111111 112357999999999999999999987644333211 11 11
Q ss_pred ------chhhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHHHh-cCcCCCCCCcEEEEeecCCCC-----
Q 012000 286 ------TSKWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLIQF-DGVTSNPNDLVIVMGATNKPQ----- 350 (473)
Q Consensus 286 ------~~~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l-dg~~~~~~~~v~vI~tTn~~~----- 350 (473)
...|.-++..++ +.+..|||++.+........+..+.++.+..- .|+...-+.+.-|+||+|+.+
T Consensus 363 v~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~ 442 (682)
T COG1241 363 VVRDKVTGEWVLEAGALVLADGGVCCIDEFDKMNEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDP 442 (682)
T ss_pred EEEccCCCeEEEeCCEEEEecCCEEEEEeccCCChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCC
Confidence 122333333322 35667999976654444334433333333211 233333345567899999877
Q ss_pred --------CCCHHHhccccccc-ccCCCcHHHHHHHHHHHhccC-----------------------------------C
Q 012000 351 --------ELDDAVLRRLVKRI-YVPLPDENVRRLLLKHKLKGQ-----------------------------------A 386 (473)
Q Consensus 351 --------~Ld~al~rRf~~~i-~~~~P~~~~r~~il~~~l~~~-----------------------------------~ 386 (473)
.|+++|++||+.++ ..+.|+.+.-..+..+.+..+ -
T Consensus 443 ~~~~~enI~l~~~lLSRFDLifvl~D~~d~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~v 522 (682)
T COG1241 443 KKTVAENINLPAPLLSRFDLIFVLKDDPDEEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKNV 522 (682)
T ss_pred CCCHHHhcCCChhHHhhCCeeEEecCCCCccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhccC
Confidence 56899999999654 444566543333333222211 1
Q ss_pred -CCCChhhHHHHHHH-----c----------CCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 387 -FSLPGGDLERLVRE-----T----------EGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 387 -~~l~~~~l~~La~~-----t----------~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
..++++..+.|... . -.-|.++|..+++-|-..|-.++. ..++.+|...|++-
T Consensus 523 ~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~~~~~piT~RqLEsiiRLaeA~Ak~rLS-----------~~V~~eD~~eAi~l 591 (682)
T COG1241 523 TPVLTEEAREELEDYYVEMRKKSALVEEKRTIPITARQLESIIRLAEAHAKMRLS-----------DVVEEEDVDEAIRL 591 (682)
T ss_pred CcccCHHHHHHHHHHHHHhhhccccccccCcccccHHHHHHHHHHHHHHHhhhcc-----------CCCCHHHHHHHHHH
Confidence 12344444444321 1 125678888888887766655543 34778888888876
Q ss_pred hC
Q 012000 451 IR 452 (473)
Q Consensus 451 ~~ 452 (473)
+.
T Consensus 592 v~ 593 (682)
T COG1241 592 VD 593 (682)
T ss_pred HH
Confidence 65
No 233
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=98.61 E-value=9.5e-07 Score=93.37 Aligned_cols=188 Identities=21% Similarity=0.236 Sum_probs=116.7
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhh-
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWV- 290 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~- 290 (473)
+..++|.....+.+.+.+.. .......+++.|.+||||+++|+++.... +.+|+.++|..+...++
T Consensus 133 ~~~lig~s~~~~~v~~~i~~----------~a~~~~~vli~Ge~GtGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~~ 202 (463)
T TIGR01818 133 SAELIGEAPAMQEVFRAIGR----------LSRSDITVLINGESGTGKELVARALHRHSPRANGPFIALNMAAIPKDLIE 202 (463)
T ss_pred ccceeecCHHHHHHHHHHHH----------HhCcCCeEEEECCCCCCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHHH
Confidence 44678877777666665532 11223579999999999999999998764 57999999987643322
Q ss_pred ----hh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----C--CCCCcEEEEe
Q 012000 291 ----GE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----S--NPNDLVIVMG 344 (473)
Q Consensus 291 ----g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~--~~~~~v~vI~ 344 (473)
|. .+..-...++||+++.. .......|+..++.-. . ...-.+.||+
T Consensus 203 ~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l--------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~ 274 (463)
T TIGR01818 203 SELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM--------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVA 274 (463)
T ss_pred HHhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC--------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEE
Confidence 21 11122456778988433 3334555555554211 0 0112467888
Q ss_pred ecCCCC-------CCCHHHhccccc-ccccCCCc--HHHHHHHHHHHhcc----CC---CCCChhhHHHHHHHcCCCCHH
Q 012000 345 ATNKPQ-------ELDDAVLRRLVK-RIYVPLPD--ENVRRLLLKHKLKG----QA---FSLPGGDLERLVRETEGYSGS 407 (473)
Q Consensus 345 tTn~~~-------~Ld~al~rRf~~-~i~~~~P~--~~~r~~il~~~l~~----~~---~~l~~~~l~~La~~t~g~s~~ 407 (473)
+|+..- .+.+.+..|+.. .|++|+.. .++...++.+++.. .+ ..++++.+..|.....--+-+
T Consensus 275 ~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgNvr 354 (463)
T TIGR01818 275 ATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERREDIPRLARHFLALAARELDVEPKLLDPEALERLKQLRWPGNVR 354 (463)
T ss_pred eCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHH
Confidence 886532 445566667653 45555544 34455555555432 22 346788888888875544679
Q ss_pred HHHHHHHHHHHHh
Q 012000 408 DLQALCEEAAMMP 420 (473)
Q Consensus 408 dL~~l~~~A~~~a 420 (473)
+|+++++.|+..+
T Consensus 355 eL~~~~~~~~~~~ 367 (463)
T TIGR01818 355 QLENLCRWLTVMA 367 (463)
T ss_pred HHHHHHHHHHHhC
Confidence 9999999988764
No 234
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.60 E-value=1.1e-06 Score=88.41 Aligned_cols=175 Identities=19% Similarity=0.312 Sum_probs=112.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhhh----------------hhhhcceeeeecccccccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGEG----------------EKLVRTLFMIDSIMSTRMA 312 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~~----------------~~~~~~if~IDei~~~~~~ 312 (473)
.+|||.||.|+|||+||+.||+-+++||...+|..+.. .|+|+- ++..+.|++|||++.....
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~ 306 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKK 306 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhccc
Confidence 57999999999999999999999999999999988743 455542 3444678889999765421
Q ss_pred C------cchHHHHHHHHHHHHhcCcCCC---------CC--------CcEEEEeecCC--------------------C
Q 012000 313 N------ENDASRRLKSEFLIQFDGVTSN---------PN--------DLVIVMGATNK--------------------P 349 (473)
Q Consensus 313 ~------~~~~~~~~~~~ll~~ldg~~~~---------~~--------~~v~vI~tTn~--------------------~ 349 (473)
. .+-....+...||+.++|-..+ +. .+|++|+.--- |
T Consensus 307 ~~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~ 386 (564)
T KOG0745|consen 307 AESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAP 386 (564)
T ss_pred CccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCC
Confidence 1 1222345677888888764211 11 23555543100 0
Q ss_pred ------------------------------------CCCCHHHhcccccccccCCCcHHHHHHHHH-----------HHh
Q 012000 350 ------------------------------------QELDDAVLRRLVKRIYVPLPDENVRRLLLK-----------HKL 382 (473)
Q Consensus 350 ------------------------------------~~Ld~al~rRf~~~i~~~~P~~~~r~~il~-----------~~l 382 (473)
.-|-|.+..||...+.+...+.++..++|. .++
T Consensus 387 s~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Qyk~lf 466 (564)
T KOG0745|consen 387 SSKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQYKKLF 466 (564)
T ss_pred CCccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHHHHHHh
Confidence 012356666777777777777777766654 122
Q ss_pred ccC--CCCCChhhHHHHHHHc--CCCCHHHHHHHHHHHHHHhHHHh
Q 012000 383 KGQ--AFSLPGGDLERLVRET--EGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 383 ~~~--~~~l~~~~l~~La~~t--~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
... .+.+++..+..+|+.+ .+--.+-|+.+++.+.+.+.-+.
T Consensus 467 ~~~nV~L~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~Lleamfev 512 (564)
T KOG0745|consen 467 GMDNVELHFTEKALEAIAQLALKRKTGARGLRSILESLLLEAMFEV 512 (564)
T ss_pred ccCCeeEEecHHHHHHHHHHHHhhccchHHHHHHHHHHHhhhcccC
Confidence 222 2334777888887652 23336788888888888775543
No 235
>PRK15115 response regulator GlrR; Provisional
Probab=98.59 E-value=2.6e-06 Score=89.57 Aligned_cols=161 Identities=19% Similarity=0.291 Sum_probs=101.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh--------------------hhhhhcceeeeec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE--------------------GEKLVRTLFMIDS 305 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~--------------------~~~~~~~if~IDe 305 (473)
...++|+|++|||||++|+++.... +.+|+.++|..+...++.. .+..-...++||+
T Consensus 157 ~~~vli~Ge~GtGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~ 236 (444)
T PRK15115 157 DVSVLINGQSGTGKEILAQAIHNASPRASKPFIAINCGALPEQLLESELFGHARGAFTGAVSNREGLFQAAEGGTLFLDE 236 (444)
T ss_pred CCeEEEEcCCcchHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHHHHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEc
Confidence 3469999999999999999998764 5799999998764332211 1122235677898
Q ss_pred cccccccCcchHHHHHHHHHHHHhcCcCC-------CCCCcEEEEeecCCCCCCCHHHhc-cccc-------ccccCCCc
Q 012000 306 IMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDLVIVMGATNKPQELDDAVLR-RLVK-------RIYVPLPD 370 (473)
Q Consensus 306 i~~~~~~~~~~~~~~~~~~ll~~ldg~~~-------~~~~~v~vI~tTn~~~~Ld~al~r-Rf~~-------~i~~~~P~ 370 (473)
++.. .......|+..++.-.. .....+.+|++|+. ++...+.+ +|.. .+.+.+|.
T Consensus 237 i~~l--------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~--~l~~~~~~~~f~~~l~~~l~~~~i~lPp 306 (444)
T PRK15115 237 IGDM--------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHR--DLPKAMARGEFREDLYYRLNVVSLKIPA 306 (444)
T ss_pred cccC--------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCC--CHHHHHHcCCccHHHHHhhceeeecCCC
Confidence 8443 33445555555542110 01124788888875 34444433 3321 24566677
Q ss_pred HHHHH----HHHHHHhcc----CC---CCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 012000 371 ENVRR----LLLKHKLKG----QA---FSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 371 ~~~r~----~il~~~l~~----~~---~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~ 419 (473)
..+|. .|+.+++.. .+ ..++++.+..|......-+.++|.++++.|+..
T Consensus 307 Lr~R~eDi~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~ 366 (444)
T PRK15115 307 LAERTEDIPLLANHLLRQAAERHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL 366 (444)
T ss_pred hHhccccHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh
Confidence 76663 244444432 12 246889999999887655899999999998764
No 236
>PF09336 Vps4_C: Vps4 C terminal oligomerisation domain; InterPro: IPR015415 This domain is found at the C-terminal of ATPase proteins involved in vacuolar sorting. It forms an alpha helix structure and is required for oligomerisation []. ; PDB: 1XWI_A 3EIH_C 2QPA_C 3EIE_A 2RKO_A 2QP9_X 3MHV_C 3CF3_C 3CF1_A 3CF2_A ....
Probab=98.56 E-value=3.9e-08 Score=73.58 Aligned_cols=35 Identities=34% Similarity=0.881 Sum_probs=33.1
Q ss_pred CCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhC
Q 012000 437 RPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471 (473)
Q Consensus 437 ~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g 471 (473)
++|+++||..||++++|||++++|++|++|+++||
T Consensus 28 p~it~~DF~~Al~~~kpSVs~~dl~~ye~w~~~FG 62 (62)
T PF09336_consen 28 PPITMEDFEEALKKVKPSVSQEDLKKYEEWTKEFG 62 (62)
T ss_dssp HHBCHHHHHHHHHTCGGSS-HHHHHHHHHHHHHTS
T ss_pred CCCCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Confidence 58999999999999999999999999999999999
No 237
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=5.1e-07 Score=92.75 Aligned_cols=133 Identities=21% Similarity=0.285 Sum_probs=88.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC-ccchh-----------hhhhhhhhhcceeeeecccccccc--
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS-SLTSK-----------WVGEGEKLVRTLFMIDSIMSTRMA-- 312 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~-~l~~~-----------~~g~~~~~~~~if~IDei~~~~~~-- 312 (473)
.+-..+||+||||+|||.||..+|...+.||+.+-.+ +++.- .+..+.+.--.++.+|+|.+...-
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~lsiivvDdiErLiD~vp 615 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSPLSIIVVDDIERLLDYVP 615 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCcceEEEEcchhhhhcccc
Confidence 3457899999999999999999999999999976544 33221 111111222245669999775432
Q ss_pred CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCC-CHHHhcccccccccCCCcH-HHHHHHHHH
Q 012000 313 NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQEL-DDAVLRRLVKRIYVPLPDE-NVRRLLLKH 380 (473)
Q Consensus 313 ~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~L-d~al~rRf~~~i~~~~P~~-~~r~~il~~ 380 (473)
.....+..++..|+..+..... .+.+.+|++||....-| +-.+...|+..+.+|.... ++...++..
T Consensus 616 IGPRfSN~vlQaL~VllK~~pp-kg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 616 IGPRFSNLVLQALLVLLKKQPP-KGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred cCchhhHHHHHHHHHHhccCCC-CCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 3445566777788887765542 23468888988875544 2345668988888887665 555555443
No 238
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.54 E-value=1.5e-06 Score=90.03 Aligned_cols=72 Identities=26% Similarity=0.296 Sum_probs=54.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.-++++.|.+.+++.-+..-+.++++|+..... +. .....+-+||+||+||||||.++.++.++|..+++-+
T Consensus 71 lW~eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~----~~-~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~ 142 (634)
T KOG1970|consen 71 LWVEKYKPRTLEELAVHKKKISEVKQWLKQVAE----FT-PKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWS 142 (634)
T ss_pred hhHHhcCcccHHHHhhhHHhHHHHHHHHHHHHH----hc-cCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeec
Confidence 356788899999999988888888887751100 11 1223456899999999999999999999998887654
No 239
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=98.53 E-value=2.8e-06 Score=90.28 Aligned_cols=191 Identities=21% Similarity=0.243 Sum_probs=124.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc----------CCcEEEEecCccchh---h-------hhh-----------------
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSLTSK---W-------VGE----------------- 292 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~~v~~~~l~~~---~-------~g~----------------- 292 (473)
..+++.|-||||||.+++.+-.++ ...++.+++-.+.+. | .|+
T Consensus 423 ~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~ 502 (767)
T KOG1514|consen 423 SCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPREIYEKIWEALSGERVTWDAALEALNFRFTV 502 (767)
T ss_pred eeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHHHHHHHHHHhcccCcccHHHHHHHHHHhhcc
Confidence 468899999999999999998865 367788887655331 1 010
Q ss_pred -hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHh-----cccc-cccc
Q 012000 293 -GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVL-----RRLV-KRIY 365 (473)
Q Consensus 293 -~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~-----rRf~-~~i~ 365 (473)
.......++.|||++.. ..+-...|.+.++... .++.+++||+.+|..+. ++.++ +|.. .+|.
T Consensus 503 ~k~~~~~~VvLiDElD~L--------vtr~QdVlYn~fdWpt-~~~sKLvvi~IaNTmdl-PEr~l~nrvsSRlg~tRi~ 572 (767)
T KOG1514|consen 503 PKPKRSTTVVLIDELDIL--------VTRSQDVLYNIFDWPT-LKNSKLVVIAIANTMDL-PERLLMNRVSSRLGLTRIC 572 (767)
T ss_pred CCCCCCCEEEEeccHHHH--------hcccHHHHHHHhcCCc-CCCCceEEEEecccccC-HHHHhccchhhhccceeee
Confidence 01222357779999433 2333445566666655 44666888888887553 33333 3655 5689
Q ss_pred cCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCC--HHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHH
Q 012000 366 VPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYS--GSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYED 443 (473)
Q Consensus 366 ~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s--~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~d 443 (473)
|.+.+..+..+|+...+.... .+....++-+|+.-...| .+-...+|++|+..+-.+... .+......+++.|
T Consensus 573 F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA~Eia~~~~~~----~k~~~~q~v~~~~ 647 (767)
T KOG1514|consen 573 FQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRAAEIAEERNVK----GKLAVSQLVGILH 647 (767)
T ss_pred cCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhccc----ccccccceeehHH
Confidence 999999999999999988762 235555555555443333 234446788888877655431 1223335688999
Q ss_pred HHHHHHhhCCCC
Q 012000 444 FQKAMAVIRPSL 455 (473)
Q Consensus 444 f~~al~~~~ps~ 455 (473)
+.+|+..+..+.
T Consensus 648 v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 648 VMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHhhhh
Confidence 999999876544
No 240
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=98.51 E-value=5.2e-06 Score=80.09 Aligned_cols=92 Identities=15% Similarity=0.215 Sum_probs=75.2
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 428 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~ 428 (473)
|+-++-.++.|.. +|...+.+.++...||+..+....+.+.++.++.|......-+-+--..|+..|.+.+.++-.
T Consensus 339 phGiP~D~lDR~l-II~t~py~~~d~~~IL~iRc~EEdv~m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~krk~--- 414 (454)
T KOG2680|consen 339 PHGIPIDLLDRML-IISTQPYTEEDIKKILRIRCQEEDVEMNPDALDLLTKIGEATSLRYAIHLITAASLVCLKRKG--- 414 (454)
T ss_pred CCCCcHHHhhhhh-eeecccCcHHHHHHHHHhhhhhhccccCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhcC---
Confidence 6788999999985 477777889999999999999999999999999998887766677777788888888877732
Q ss_pred cccccccCCCCcHHHHHHHHHhhC
Q 012000 429 LTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 429 ~~~~~~~~~~it~~df~~al~~~~ 452 (473)
..+..+|+..+.+-+-
T Consensus 415 --------~~v~~~di~r~y~LFl 430 (454)
T KOG2680|consen 415 --------KVVEVDDIERVYRLFL 430 (454)
T ss_pred --------ceeehhHHHHHHHHHh
Confidence 4477789999887764
No 241
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.50 E-value=3.2e-07 Score=92.19 Aligned_cols=104 Identities=24% Similarity=0.326 Sum_probs=63.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-------hh---hh--hcceeeeeccccccccC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-------GE---KL--VRTLFMIDSIMSTRMAN 313 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~-------~~---~~--~~~if~IDei~~~~~~~ 313 (473)
..+++||||||||||+||.|||+++ +..++.++..+++...... .. .. --.++.||+++....
T Consensus 183 ~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l~~~DLLIIDDlG~e~~-- 260 (329)
T PRK06835 183 NENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLLINCDLLIIDDLGTEKI-- 260 (329)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHhccCCEEEEeccCCCCC--
Confidence 3689999999999999999999987 6788888888776543221 11 11 126778999965432
Q ss_pred cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC-CC----CCHHHhcccc
Q 012000 314 ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-QE----LDDAVLRRLV 361 (473)
Q Consensus 314 ~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~-~~----Ld~al~rRf~ 361 (473)
+ ......|+..++..... .. .+|.|||.+ .. +++.+.+|+.
T Consensus 261 -t---~~~~~~Lf~iin~R~~~-~k--~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 -T---EFSKSELFNLINKRLLR-QK--KMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred -C---HHHHHHHHHHHHHHHHC-CC--CEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 1 22234445555433322 11 245567653 33 3556666664
No 242
>PRK08181 transposase; Validated
Probab=98.49 E-value=3.3e-07 Score=89.49 Aligned_cols=62 Identities=29% Similarity=0.400 Sum_probs=44.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-----hhhh-----hcceeeeecccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-----GEKL-----VRTLFMIDSIMSTR 310 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~-----~~~~-----~~~if~IDei~~~~ 310 (473)
..+++|+||||||||+||.+++.++ |..++.++..+++...... .... -..++.|||++...
T Consensus 106 ~~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~l~~~dLLIIDDlg~~~ 180 (269)
T PRK08181 106 GANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAKLDKFDLLILDDLAYVT 180 (269)
T ss_pred CceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHHHhcCCEEEEecccccc
Confidence 4579999999999999999999765 6777888877776543211 1111 13578899996543
No 243
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.48 E-value=1.1e-07 Score=87.50 Aligned_cols=62 Identities=34% Similarity=0.544 Sum_probs=42.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-----hhhhh-----cceeeeeccccc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-----GEKLV-----RTLFMIDSIMST 309 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~-----~~~~~-----~~if~IDei~~~ 309 (473)
...+++|+||||||||+||.+++.++ +.++..++..+++...-.. .+..+ ..++.|||++..
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~~~dlLilDDlG~~ 120 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLKRVDLLILDDLGYE 120 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHHTSSCEEEETCTSS
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccccccEeccccccee
Confidence 35799999999999999999999875 7778888877775543211 11111 257789999644
No 244
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.45 E-value=3.3e-06 Score=82.88 Aligned_cols=111 Identities=16% Similarity=0.234 Sum_probs=73.4
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCc----------------EEEEecCcc-chhhhhhhhhh-----------h
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQAT----------------FFNVSASSL-TSKWVGEGEKL-----------V 297 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~----------------~~~v~~~~l-~~~~~g~~~~~-----------~ 297 (473)
...++++||+||+|+||+.+|.++|..+-+. +..+.+..- ..-.+.+.+.. -
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~~I~idqiR~l~~~~~~~p~e~~ 95 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGRLHSIETPRAIKKQIWIHPYESP 95 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCCcCcHHHHHHHHHHHhhCccCCC
Confidence 3456899999999999999999999876431 111211100 00011111111 1
Q ss_pred cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCC
Q 012000 298 RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 298 ~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P 369 (473)
..++.||+.+ .......+.||+.++ .++.++++|..|+.++.|.|.+++||.. +.|+.+
T Consensus 96 ~kv~ii~~ad--------~mt~~AaNaLLK~LE----EPp~~~~fiL~~~~~~~ll~TI~SRcq~-~~~~~~ 154 (290)
T PRK05917 96 YKIYIIHEAD--------RMTLDAISAFLKVLE----DPPQHGVIILTSAKPQRLPPTIRSRSLS-IHIPME 154 (290)
T ss_pred ceEEEEechh--------hcCHHHHHHHHHHhh----cCCCCeEEEEEeCChhhCcHHHHhcceE-EEccch
Confidence 2466677773 334456788888887 5677789999999999999999999976 566554
No 245
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.43 E-value=1.8e-07 Score=82.29 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=67.2
Q ss_pred ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCccchhhhhhhhhh
Q 012000 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSKWVGEGEKL 296 (473)
Q Consensus 220 Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l~~~~~g~~~~~ 296 (473)
|.....+.|++.+... ......|||+|+|||||+++|++|....+ .+|+.+++..+...++.. .
T Consensus 2 G~S~~~~~l~~~l~~~----------a~~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~~~~l~~---a 68 (138)
T PF14532_consen 2 GKSPAMRRLRRQLERL----------AKSSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLPAELLEQ---A 68 (138)
T ss_dssp -SCHHHHHHHHHHHHH----------HCSSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTCHHHHHH---C
T ss_pred CCCHHHHHHHHHHHHH----------hCCCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCcHHHHHH---c
Confidence 4445555565555321 12245699999999999999999998764 366666666654333333 3
Q ss_pred hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC-CC------CCCHHHhcccc
Q 012000 297 VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK-PQ------ELDDAVLRRLV 361 (473)
Q Consensus 297 ~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~-~~------~Ld~al~rRf~ 361 (473)
....++|++++. ........++..+.... ..++.+|+++.. +. .+++.+..||.
T Consensus 69 ~~gtL~l~~i~~--------L~~~~Q~~L~~~l~~~~---~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 69 KGGTLYLKNIDR--------LSPEAQRRLLDLLKRQE---RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp TTSEEEEECGCC--------S-HHHHHHHHHHHHHCT---TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred CCCEEEECChHH--------CCHHHHHHHHHHHHhcC---CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 556777888833 33444455555554322 222455555543 22 34566666665
No 246
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.41 E-value=8e-07 Score=88.56 Aligned_cols=61 Identities=23% Similarity=0.319 Sum_probs=44.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-----hhhh-----hcceeeeeccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-----GEKL-----VRTLFMIDSIMST 309 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~-----~~~~-----~~~if~IDei~~~ 309 (473)
.+|++|+||+|||||+|+.|+|+++ |.++..+..++++...... .... -..++.||||+..
T Consensus 156 ~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~~~~~~~~~~~l~~l~~~dlLiIDDiG~e 229 (306)
T PRK08939 156 VKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKNSISDGSVKEKIDAVKEAPVLMLDDIGAE 229 (306)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHHHHhcCcHHHHHHHhcCCCEEEEecCCCc
Confidence 5799999999999999999999987 6777777777665443211 1111 1367889999543
No 247
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.41 E-value=1.7e-06 Score=84.89 Aligned_cols=131 Identities=20% Similarity=0.302 Sum_probs=71.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCc---EEEEecCccch---------hhhhh-------hhhhhcceeeeeccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSLTS---------KWVGE-------GEKLVRTLFMIDSIMST 309 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~---~~~v~~~~l~~---------~~~g~-------~~~~~~~if~IDei~~~ 309 (473)
.+++||+||+|||||++++.+-..+... ...+..+.... ..+.. .....+.+++||++.-.
T Consensus 33 ~~pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p 112 (272)
T PF12775_consen 33 GRPVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQTTSNQLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMP 112 (272)
T ss_dssp TEEEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TTHHHHHHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S
T ss_pred CCcEEEECCCCCchhHHHHhhhccCCccccceeEeeccCCCCHHHHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCC
Confidence 4689999999999999999887766432 22333332110 00000 01122457889999665
Q ss_pred cccCcchHHHHHHHHHHHHh---cCcCCCCC------CcEEEEeecCCCC---CCCHHHhcccccccccCCCcHHHHHHH
Q 012000 310 RMANENDASRRLKSEFLIQF---DGVTSNPN------DLVIVMGATNKPQ---ELDDAVLRRLVKRIYVPLPDENVRRLL 377 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~ll~~l---dg~~~~~~------~~v~vI~tTn~~~---~Ld~al~rRf~~~i~~~~P~~~~r~~i 377 (473)
..+.-... ...+||.++ .|...... ..+.+||+++++. .+++.++|.|. ++.++.|+.+....|
T Consensus 113 ~~d~ygtq---~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~vaa~~p~~Gr~~is~R~~r~f~-i~~~~~p~~~sl~~I 188 (272)
T PF12775_consen 113 QPDKYGTQ---PPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVAAMNPTGGRNPISPRFLRHFN-ILNIPYPSDESLNTI 188 (272)
T ss_dssp ---TTS-----HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEEEESSTTT--SHHHHHHTTEE-EEE----TCCHHHHH
T ss_pred CCCCCCCc---CHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEEecCCCCCCCCCChHHhhheE-EEEecCCChHHHHHH
Confidence 54432111 122344332 23332221 3478889888643 46777777775 489999999999888
Q ss_pred HHHHhc
Q 012000 378 LKHKLK 383 (473)
Q Consensus 378 l~~~l~ 383 (473)
+..++.
T Consensus 189 f~~il~ 194 (272)
T PF12775_consen 189 FSSILQ 194 (272)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 887765
No 248
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.38 E-value=2.2e-06 Score=81.19 Aligned_cols=173 Identities=22% Similarity=0.305 Sum_probs=89.5
Q ss_pred cChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---EEEEec-Ccc----chhh-
Q 012000 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSA-SSL----TSKW- 289 (473)
Q Consensus 219 vGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---~~~v~~-~~l----~~~~- 289 (473)
+|.+...+.|.+++.. .+...++|+||+|+|||+|++.+.....-. .+.+.. ... ....
T Consensus 2 ~gR~~el~~l~~~l~~------------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~ 69 (234)
T PF01637_consen 2 FGREKELEKLKELLES------------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFI 69 (234)
T ss_dssp -S-HHHHHHHHHCHHH--------------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh------------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHH
Confidence 5667777777766531 234689999999999999999999987321 111111 000 0000
Q ss_pred ------------hhh----------------------------h-hhhhcceeeeecccccc-ccCcchHHHHHHHHHHH
Q 012000 290 ------------VGE----------------------------G-EKLVRTLFMIDSIMSTR-MANENDASRRLKSEFLI 327 (473)
Q Consensus 290 ------------~g~----------------------------~-~~~~~~if~IDei~~~~-~~~~~~~~~~~~~~ll~ 327 (473)
.+. . ....+.++.|||+.... ... ........+..
T Consensus 70 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~---~~~~~~~~l~~ 146 (234)
T PF01637_consen 70 EETSLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASE---EDKDFLKSLRS 146 (234)
T ss_dssp HHHHHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTT---TTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhccc---chHHHHHHHHH
Confidence 000 0 00012466699997665 111 12344455555
Q ss_pred HhcCcCCCCCCcEEEEeecCC-----CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCC--ChhhHHHHHHH
Q 012000 328 QFDGVTSNPNDLVIVMGATNK-----PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSL--PGGDLERLVRE 400 (473)
Q Consensus 328 ~ldg~~~~~~~~v~vI~tTn~-----~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l--~~~~l~~La~~ 400 (473)
.++..... ....+|++++.. ...-...+..|+.. +.+++.+.++..+++...+... ..+ ++.+++.+...
T Consensus 147 ~~~~~~~~-~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~~~~~~~~~~~i~~~ 223 (234)
T PF01637_consen 147 LLDSLLSQ-QNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IKLPFSDEDIEEIYSL 223 (234)
T ss_dssp HHHH-----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC-------HHHHHHHHHH
T ss_pred HHhhcccc-CCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hcccCCHHHHHHHHHH
Confidence 55543222 222334444431 01112334557777 9999999999999999987776 544 89999999999
Q ss_pred cCCCCHHHHH
Q 012000 401 TEGYSGSDLQ 410 (473)
Q Consensus 401 t~g~s~~dL~ 410 (473)
+.|. |+-|.
T Consensus 224 ~gG~-P~~l~ 232 (234)
T PF01637_consen 224 TGGN-PRYLQ 232 (234)
T ss_dssp HTT--HHHHH
T ss_pred hCCC-HHHHh
Confidence 9994 55443
No 249
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.36 E-value=2.1e-06 Score=83.37 Aligned_cols=62 Identities=37% Similarity=0.515 Sum_probs=47.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhh-----hhhh-hh-----cceeeeecccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVG-----EGEK-LV-----RTLFMIDSIMSTR 310 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g-----~~~~-~~-----~~if~IDei~~~~ 310 (473)
..+++|+||||+|||+||-||++++ |..++.+..++++..... ..+. .. -.++.||||....
T Consensus 105 ~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~~~~~~~l~~~l~~~dlLIiDDlG~~~ 180 (254)
T COG1484 105 GENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDEGRLEEKLLRELKKVDLLIIDDIGYEP 180 (254)
T ss_pred CCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhcCchHHHHHHHhhcCCEEEEecccCcc
Confidence 5789999999999999999999986 788888888888765432 1111 11 2688899996544
No 250
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=98.35 E-value=4.9e-06 Score=88.05 Aligned_cols=164 Identities=23% Similarity=0.240 Sum_probs=91.8
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe-cCcc---------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS-ASSL--------- 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~-~~~l--------- 285 (473)
.|.|++++|+.|.-.+.-- .+.+..+.. -+..-+|||+|-||||||-+.+.+++-+..-.+.-. ++.-
T Consensus 430 sIye~edvKkglLLqLfGG-t~k~~~~~~~~R~~INILL~GDPGtsKSqlLqyv~~l~pRg~yTSGkGsSavGLTayVtr 508 (804)
T KOG0478|consen 430 SIYELEDVKKGLLLQLFGG-TRKEDEKSGRFRGDINILLVGDPGTSKSQLLQYCHRLLPRGVYTSGKGSSAVGLTAYVTK 508 (804)
T ss_pred hhhcccchhhhHHHHHhcC-CcccccccccccccceEEEecCCCcCHHHHHHHHHHhCCcceeecCCccchhcceeeEEe
Confidence 4677888888876444211 111111111 122357999999999999999999987643222110 0100
Q ss_pred ---chhhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHH-HhcCcCCCCCCcEEEEeecCCCC--------
Q 012000 286 ---TSKWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLI-QFDGVTSNPNDLVIVMGATNKPQ-------- 350 (473)
Q Consensus 286 ---~~~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~-~ldg~~~~~~~~v~vI~tTn~~~-------- 350 (473)
...++-++..++ ..+..|||++.+.....+-.+.-+..+-+. ...|+...-+.+.-|||++|+..
T Consensus 509 d~dtkqlVLesGALVLSD~GiCCIDEFDKM~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~ 588 (804)
T KOG0478|consen 509 DPDTRQLVLESGALVLSDNGICCIDEFDKMSDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKS 588 (804)
T ss_pred cCccceeeeecCcEEEcCCceEEchhhhhhhHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCc
Confidence 011222222222 234459999766544443444444333332 33455444455677999998543
Q ss_pred -----CCCHHHhccccccc-ccCCCcHHHHHHHHHHH
Q 012000 351 -----ELDDAVLRRLVKRI-YVPLPDENVRRLLLKHK 381 (473)
Q Consensus 351 -----~Ld~al~rRf~~~i-~~~~P~~~~r~~il~~~ 381 (473)
.|+|.|++||+.++ .++.||...-..|-.++
T Consensus 589 i~eNI~LpptLLSRFDLIylllD~~DE~~Dr~La~Hi 625 (804)
T KOG0478|consen 589 IIENINLPPTLLSRFDLIFLLLDKPDERSDRRLADHI 625 (804)
T ss_pred hhhccCCChhhhhhhcEEEEEecCcchhHHHHHHHHH
Confidence 57899999999653 67777776444444443
No 251
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.34 E-value=2.1e-05 Score=78.00 Aligned_cols=138 Identities=12% Similarity=0.034 Sum_probs=88.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC-------------cEEEEe--cCccchhhhhh--------h-hhhhcceee
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQA-------------TFFNVS--ASSLTSKWVGE--------G-EKLVRTLFM 302 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~-------------~~~~v~--~~~l~~~~~g~--------~-~~~~~~if~ 302 (473)
..++.+||+|+.|.||+.+|+++++.+-+ .++.++ ...+.-.-+-+ + +..-+.++.
T Consensus 16 ~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir~l~~~~~~~~~~~~~~KvvI 95 (299)
T PRK07132 16 KISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFLSAINKLYFSSFVQSQKKILI 95 (299)
T ss_pred CCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHHHHHHHhccCCcccCCceEEE
Confidence 34578999999999999999999988622 223333 22111000000 0 112345677
Q ss_pred eeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHh
Q 012000 303 IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKL 382 (473)
Q Consensus 303 IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l 382 (473)
||+.+ .......+.||+.++ .++..+++|.+|+.+..+-+.+++||.. +.|++|+.++....+...
T Consensus 96 I~~~e--------~m~~~a~NaLLK~LE----EPp~~t~~il~~~~~~kll~TI~SRc~~-~~f~~l~~~~l~~~l~~~- 161 (299)
T PRK07132 96 IKNIE--------KTSNSLLNALLKTIE----EPPKDTYFLLTTKNINKVLPTIVSRCQV-FNVKEPDQQKILAKLLSK- 161 (299)
T ss_pred Eeccc--------ccCHHHHHHHHHHhh----CCCCCeEEEEEeCChHhChHHHHhCeEE-EECCCCCHHHHHHHHHHc-
Confidence 78762 223445677888887 4566677887887889999999999966 889888888777665532
Q ss_pred ccCCCCCChhhHHHHHHHcCC
Q 012000 383 KGQAFSLPGGDLERLVRETEG 403 (473)
Q Consensus 383 ~~~~~~l~~~~l~~La~~t~g 403 (473)
+ +++.....+|..+.|
T Consensus 162 ---~--~~~~~a~~~a~~~~~ 177 (299)
T PRK07132 162 ---N--KEKEYNWFYAYIFSN 177 (299)
T ss_pred ---C--CChhHHHHHHHHcCC
Confidence 2 345555555555554
No 252
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.33 E-value=2.5e-06 Score=94.91 Aligned_cols=198 Identities=16% Similarity=0.180 Sum_probs=133.0
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhc-chhhhhcCCCC--Cc-eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAK-RRDLFTGLRRP--AR-GLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~-~~~~~~~~~~~--~~-~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
.+++.+....++.|.......+.+++..--. .+..|.....- .. .+|++||||.|||+.++++|.+++..+++.++
T Consensus 311 ~~k~~p~~~k~~~~~~~~~~~~~~~l~~~k~~~~~sy~~~~~~ss~~~~~l~~G~pGigKT~~~h~~~k~~g~~v~E~Na 390 (871)
T KOG1968|consen 311 TEKYQPTSSKALEGNASSSKKASKWLAKSKDKEKSSYKENEPDSSKKKALLLSGPPGIGKTTAAHKAAKELGFKVVEKNA 390 (871)
T ss_pred ccccccccHHhhhcccchhhhhhhHHHhhhccccccccccCcchhhHHHHHhcCCCCCCchhhHhhhhhhcccceeecCc
Confidence 4456677778888877777777777753211 22222222111 12 36999999999999999999999999999999
Q ss_pred Cccchhhhhhh--------------h---------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCc
Q 012000 283 SSLTSKWVGEG--------------E---------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDL 339 (473)
Q Consensus 283 ~~l~~~~~g~~--------------~---------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~ 339 (473)
++..++..... . .....++.+|+++.+... + +....++..... ...
T Consensus 391 s~~RSk~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD~~~~~-d----Rg~v~~l~~l~~------ks~ 459 (871)
T KOG1968|consen 391 SDVRSKKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVDGMFGE-D----RGGVSKLSSLCK------KSS 459 (871)
T ss_pred cccccccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccccccch-h----hhhHHHHHHHHH------hcc
Confidence 87655432211 1 111236668998776652 1 222233332222 111
Q ss_pred EEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH
Q 012000 340 VIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM 419 (473)
Q Consensus 340 v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~ 419 (473)
+-+|+++|.........+.|.+..++|+.|+...+..-+..++....+.+++..++.+.+.+.| ||++.+....+.
T Consensus 460 ~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ki~~~~l~~~s~~~~~----DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 460 RPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGIKISDDVLEEISKLSGG----DIRQIIMQLQFW 535 (871)
T ss_pred CCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccceecCcHHHHHHHHhccc----CHHHHHHHHhhh
Confidence 3477788877766655555655778999999999999999999999999999999999998854 777766655444
No 253
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.32 E-value=2.3e-06 Score=89.77 Aligned_cols=230 Identities=17% Similarity=0.203 Sum_probs=127.3
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec----Ccc-----
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA----SSL----- 285 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~----~~l----- 285 (473)
|-.|.|++.+|.-|.-.+.--......-....+-.-+|++.|-||||||-+.++++.-+...++.-.- +.|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYtsGkaSSaAGLTaaVv 423 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYTSGKASSAAGLTAAVV 423 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEecCcccccccceEEEE
Confidence 55688999999888755532111110000001123479999999999999999999876544443211 111
Q ss_pred ----chhhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHHHh-cCcCCCCCCcEEEEeecCCCC-------
Q 012000 286 ----TSKWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLIQF-DGVTSNPNDLVIVMGATNKPQ------- 350 (473)
Q Consensus 286 ----~~~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l-dg~~~~~~~~v~vI~tTn~~~------- 350 (473)
...|.-++..++ ..+-.|||++.+....+...+..+..+-+..- .|+...-+.+.-||||+|+..
T Consensus 424 kD~esgdf~iEAGALmLADnGICCIDEFDKMd~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAANPv~GhYdR~k 503 (764)
T KOG0480|consen 424 KDEESGDFTIEAGALMLADNGICCIDEFDKMDVKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAANPVGGHYDRKK 503 (764)
T ss_pred ecCCCCceeeecCcEEEccCceEEechhcccChHhHHHHHHHHHhheehheecceEEeecchhhhhhhcCCcCCcccccc
Confidence 111222222211 23555999977654333333333333322211 233222244567889998765
Q ss_pred ------CCCHHHhccccc-ccccCCCcHHHHHHHHHHHhccCCC---------C-------------------CChhhHH
Q 012000 351 ------ELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKGQAF---------S-------------------LPGGDLE 395 (473)
Q Consensus 351 ------~Ld~al~rRf~~-~i~~~~P~~~~r~~il~~~l~~~~~---------~-------------------l~~~~l~ 395 (473)
.+++++++||+. .|.++-|++..-..|-++++..+.. . ++.+.-+
T Consensus 504 tl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~~~P~ls~ea~~ 583 (764)
T KOG0480|consen 504 TLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARNFKPKLSKEASE 583 (764)
T ss_pred chhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHhcCccccHHHHH
Confidence 568999999995 4578888887776666665543211 0 1111111
Q ss_pred HHHH---------------HcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCC
Q 012000 396 RLVR---------------ETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSL 455 (473)
Q Consensus 396 ~La~---------------~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~ 455 (473)
.|.+ .+.+.|.++|..|++-+-..|--++ ...+|.+|.++|.+-.+.|+
T Consensus 584 ~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~-----------~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 584 MLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVEC-----------RDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred HHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhh-----------hhhccHHHHHHHHHHHHhhh
Confidence 1111 0225567778887776544442222 23488888888888777664
No 254
>PRK06526 transposase; Provisional
Probab=98.31 E-value=7.3e-07 Score=86.52 Aligned_cols=61 Identities=20% Similarity=0.346 Sum_probs=41.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhh-----hhhhh----h-cceeeeeccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVG-----EGEKL----V-RTLFMIDSIMST 309 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g-----~~~~~----~-~~if~IDei~~~ 309 (473)
..+++|+||||||||+||.+|+.++ |..+..++..+++..... ..... . ..++.|||++..
T Consensus 98 ~~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~~~~~~~~~l~~l~~~dlLIIDD~g~~ 171 (254)
T PRK06526 98 KENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAHHAGRLQAELVKLGRYPLLIVDEVGYI 171 (254)
T ss_pred CceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHHhcCcHHHHHHHhccCCEEEEcccccC
Confidence 4689999999999999999998875 556665666555443211 11111 1 257789999643
No 255
>PRK06921 hypothetical protein; Provisional
Probab=98.27 E-value=1.2e-06 Score=85.58 Aligned_cols=60 Identities=23% Similarity=0.294 Sum_probs=41.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecCccchhhhh---hhhhhh-----cceeeeecccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTSKWVG---EGEKLV-----RTLFMIDSIMS 308 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~~l~~~~~g---~~~~~~-----~~if~IDei~~ 308 (473)
..+++|+||||||||+|+.|||+++ +..++.++..+++..... .....+ ..++.||++..
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~~~~~~~dlLiIDDl~~ 188 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKLNRMKKVEVLFIDDLFK 188 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecccc
Confidence 4689999999999999999999986 566777776665443211 111111 36788999943
No 256
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=1.8e-05 Score=76.23 Aligned_cols=110 Identities=15% Similarity=0.186 Sum_probs=72.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCc----------------------EEEEecC--cc--------chhhhhhh-
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT----------------------FFNVSAS--SL--------TSKWVGEG- 293 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~----------------------~~~v~~~--~l--------~~~~~g~~- 293 (473)
.+++++||+||+|+||..+|.++|..+-+. +..+.+. .+ .......+
T Consensus 5 ~~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~~~~I~id~ir~l~~~l~~~s~ 84 (261)
T PRK05818 5 NKTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQKNPIKKEDALSIINKLNRPSV 84 (261)
T ss_pred CCCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCCcccCCHHHHHHHHHHHccCch
Confidence 457899999999999999999999876221 1111110 00 00000000
Q ss_pred hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCC
Q 012000 294 EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 294 ~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P 369 (473)
+..-..|+.|++. +.......+.||+.++ .++.++++|.+|+.++.+.+.+++||.. +.++.+
T Consensus 85 e~~~~KV~II~~a--------e~m~~~AaNaLLK~LE----EPp~~t~fiLit~~~~~lLpTI~SRCq~-~~~~~~ 147 (261)
T PRK05818 85 ESNGKKIYIIYGI--------EKLNKQSANSLLKLIE----EPPKNTYGIFTTRNENNILNTILSRCVQ-YVVLSK 147 (261)
T ss_pred hcCCCEEEEeccH--------hhhCHHHHHHHHHhhc----CCCCCeEEEEEECChHhCchHhhhheee-eecCCh
Confidence 1112345566666 3334456788898887 5677799999999999999999999976 566665
No 257
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=98.25 E-value=2.2e-05 Score=82.46 Aligned_cols=184 Identities=17% Similarity=0.238 Sum_probs=109.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE- 292 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~- 292 (473)
.++|.....+.+...+.. .......++++|.+||||+++|+++.... +.+|+.++|..+...++..
T Consensus 140 ~lig~s~~~~~~~~~i~~----------~~~~~~~vli~ge~g~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~~~~~~ 209 (441)
T PRK10365 140 GMVGKSPAMQHLLSEIAL----------VAPSEATVLIHGDSGTGKELVARAIHASSARSEKPLVTLNCAALNESLLESE 209 (441)
T ss_pred ceEecCHHHHHHHHHHhh----------ccCCCCeEEEEecCCCCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHHHHHHH
Confidence 356665555555544431 12224679999999999999999997654 5789999998764433221
Q ss_pred -------------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-------CCCCcEEEEeec
Q 012000 293 -------------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDLVIVMGAT 346 (473)
Q Consensus 293 -------------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~-------~~~~~v~vI~tT 346 (473)
....-...++||+++... ......++..++.-.. ...-.+.+|++|
T Consensus 210 lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l~--------~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t 281 (441)
T PRK10365 210 LFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS--------PMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAAT 281 (441)
T ss_pred hcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccCC--------HHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeC
Confidence 011123467799985443 3344455555542210 011236678777
Q ss_pred CCCC-------CCCHHHhcccccccccCCCcHHHH----HHHHHHHhcc-------CCCCCChhhHHHHHHHcCCCCHHH
Q 012000 347 NKPQ-------ELDDAVLRRLVKRIYVPLPDENVR----RLLLKHKLKG-------QAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 347 n~~~-------~Ld~al~rRf~~~i~~~~P~~~~r----~~il~~~l~~-------~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
+.+- .+.+.+..|+.. +.+..|...+| ..++.+++.. ....+++..+..|......-..++
T Consensus 282 ~~~~~~~~~~~~~~~~l~~~l~~-~~i~~ppLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpgN~re 360 (441)
T PRK10365 282 HRDLAAEVNAGRFRQDLYYRLNV-VAIEVPSLRQRREDIPLLAGHFLQRFAERNRKAVKGFTPQAMDLLIHYDWPGNIRE 360 (441)
T ss_pred CCCHHHHHHcCCchHHHHHHhcc-ceecCCChhhcchhHHHHHHHHHHHHHHHhCCCCCCcCHHHHHHHHhCCCCCHHHH
Confidence 6532 223333334432 55666666555 3345555432 113467888888988765447899
Q ss_pred HHHHHHHHHHH
Q 012000 409 LQALCEEAAMM 419 (473)
Q Consensus 409 L~~l~~~A~~~ 419 (473)
|.++++.|+..
T Consensus 361 L~~~~~~~~~~ 371 (441)
T PRK10365 361 LENAVERAVVL 371 (441)
T ss_pred HHHHHHHHHHh
Confidence 99999988754
No 258
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.23 E-value=4e-07 Score=91.93 Aligned_cols=159 Identities=24% Similarity=0.275 Sum_probs=80.6
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc-----c------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS-----L------ 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~-----l------ 285 (473)
.|.|.+.+|..|.-.+.........-....+..-++||.|.||||||.|.+.+++-....++ +++.. +
T Consensus 25 ~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr~v~-~~g~~~s~~gLta~~~~ 103 (331)
T PF00493_consen 25 SIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPRSVY-TSGKGSSAAGLTASVSR 103 (331)
T ss_dssp TTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SSEEE-EECCGSTCCCCCEEECC
T ss_pred cCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCceEE-ECCCCcccCCccceecc
Confidence 57799988887754333211110000000122458999999999999999988765544333 22111 1
Q ss_pred ---chhhhhhhh---hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc---------CCCCCCcEEEEeecCCCC
Q 012000 286 ---TSKWVGEGE---KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV---------TSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 286 ---~~~~~g~~~---~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~---------~~~~~~~v~vI~tTn~~~ 350 (473)
...|.-++. ..-+.+..|||++.... .....++..|+.- ...-+.+.-|++++|+..
T Consensus 104 d~~~~~~~leaGalvlad~GiccIDe~dk~~~--------~~~~~l~eaMEqq~isi~kagi~~~l~ar~svlaa~NP~~ 175 (331)
T PF00493_consen 104 DPVTGEWVLEAGALVLADGGICCIDEFDKMKE--------DDRDALHEAMEQQTISIAKAGIVTTLNARCSVLAAANPKF 175 (331)
T ss_dssp CGGTSSECEEE-HHHHCTTSEEEECTTTT--C--------HHHHHHHHHHHCSCEEECTSSSEEEEE---EEEEEE--TT
T ss_pred ccccceeEEeCCchhcccCceeeecccccccc--------hHHHHHHHHHHcCeeccchhhhcccccchhhhHHHHhhhh
Confidence 222332222 22356788999955432 2344555555432 111134568999998876
Q ss_pred -------------CCCHHHhcccccccc-cCCCcHHHHHHHHHHHhcc
Q 012000 351 -------------ELDDAVLRRLVKRIY-VPLPDENVRRLLLKHKLKG 384 (473)
Q Consensus 351 -------------~Ld~al~rRf~~~i~-~~~P~~~~r~~il~~~l~~ 384 (473)
.+++++++||+.++. .+.|+.+.-..+.++.+..
T Consensus 176 g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~ 223 (331)
T PF00493_consen 176 GRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDS 223 (331)
T ss_dssp --S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTT
T ss_pred hhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEec
Confidence 478899999997654 5677766666666665554
No 259
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.20 E-value=2.2e-05 Score=80.16 Aligned_cols=221 Identities=19% Similarity=0.210 Sum_probs=133.2
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEEecCccch---
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNVSASSLTS--- 287 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v~~~~l~~--- 287 (473)
..++|.+.-...+++++..++.. ..+..+.+.|-||||||.+...+-..+. ...++++|..+..
T Consensus 150 ~~l~gRe~e~~~v~~F~~~hle~--------~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~a 221 (529)
T KOG2227|consen 150 GTLKGRELEMDIVREFFSLHLEL--------NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASA 221 (529)
T ss_pred CCccchHHHHHHHHHHHHhhhhc--------ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHH
Confidence 45789999999999999765442 2356899999999999999887755442 2446677664311
Q ss_pred ---hhhhhh--------hh--------------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEE
Q 012000 288 ---KWVGEG--------EK--------------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIV 342 (473)
Q Consensus 288 ---~~~g~~--------~~--------------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~v 342 (473)
+..+.. .. ...-++.+||++...... +..|..+..+...++.++++
T Consensus 222 iF~kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~---------~~vLy~lFewp~lp~sr~iL 292 (529)
T KOG2227|consen 222 IFKKIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS---------QTVLYTLFEWPKLPNSRIIL 292 (529)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc---------cceeeeehhcccCCcceeee
Confidence 111110 00 001233477774433111 11222233333455678999
Q ss_pred EeecCCCCCCCHHHhc---cc---ccccccCCCcHHHHHHHHHHHhccCCCCC-ChhhHHHHHHHcCCCCHH--HHHHHH
Q 012000 343 MGATNKPQELDDAVLR---RL---VKRIYVPLPDENVRRLLLKHKLKGQAFSL-PGGDLERLVRETEGYSGS--DLQALC 413 (473)
Q Consensus 343 I~tTn~~~~Ld~al~r---Rf---~~~i~~~~P~~~~r~~il~~~l~~~~~~l-~~~~l~~La~~t~g~s~~--dL~~l~ 413 (473)
||.+|..+.-|-.|.| |. ...+.|++++.++..+|+...+....... -+..+...|+...|.||. -+-.+|
T Consensus 293 iGiANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~ 372 (529)
T KOG2227|consen 293 IGIANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVC 372 (529)
T ss_pred eeehhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHH
Confidence 9999987766655554 22 25689999999999999999988755432 335778888888887763 333457
Q ss_pred HHHHHHhHHHhcccccc----c-ccccCCCCcHHHHHHHHHhhCC
Q 012000 414 EEAAMMPIRELGTNILT----V-KANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 414 ~~A~~~a~~~~~~~~~~----~-~~~~~~~it~~df~~al~~~~p 453 (473)
+.|...+-.+-...... . ......+|-++++..++..+--
T Consensus 373 R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~ 417 (529)
T KOG2227|consen 373 RRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDG 417 (529)
T ss_pred HHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhcc
Confidence 76665553332221000 0 0111144557777777766543
No 260
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.19 E-value=6.5e-05 Score=74.04 Aligned_cols=157 Identities=15% Similarity=0.102 Sum_probs=93.5
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc------------------------
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT------------------------ 276 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~------------------------ 276 (473)
++.+++.|+..+. ..+.++++||+|| +||+++|+++|..+-+.
T Consensus 7 q~~~~~~L~~~~~-----------~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD 73 (290)
T PRK07276 7 QPKVFQRFQTILE-----------QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSD 73 (290)
T ss_pred HHHHHHHHHHHHH-----------cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4556666666663 3355688999996 68999999999865321
Q ss_pred EEEEecCccchhhhhhhhh-----------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEee
Q 012000 277 FFNVSASSLTSKWVGEGEK-----------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA 345 (473)
Q Consensus 277 ~~~v~~~~l~~~~~g~~~~-----------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~t 345 (473)
++.+.+..- .-.+.+.+. .-+.|+.||+.+. ......+.||+.++ .++.++++|.+
T Consensus 74 ~~~i~p~~~-~I~idqIR~l~~~~~~~p~~~~~kV~II~~ad~--------m~~~AaNaLLKtLE----EPp~~t~~iL~ 140 (290)
T PRK07276 74 VTVIEPQGQ-VIKTDTIRELVKNFSQSGYEGKQQVFIIKDADK--------MHVNAANSLLKVIE----EPQSEIYIFLL 140 (290)
T ss_pred eeeecCCCC-cCCHHHHHHHHHHHhhCcccCCcEEEEeehhhh--------cCHHHHHHHHHHhc----CCCCCeEEEEE
Confidence 111211100 000111111 1135777887733 33456788898887 55667889999
Q ss_pred cCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 012000 346 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 413 (473)
Q Consensus 346 Tn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~ 413 (473)
|+.++.+-|.+++||.. +.|+. +.+...+++. ..++. ......++.. .| ++.....+.
T Consensus 141 t~~~~~lLpTI~SRcq~-i~f~~-~~~~~~~~L~----~~g~~--~~~a~~la~~-~~-s~~~A~~l~ 198 (290)
T PRK07276 141 TNDENKVLPTIKSRTQI-FHFPK-NEAYLIQLLE----QKGLL--KTQAELLAKL-AQ-STSEAEKLA 198 (290)
T ss_pred ECChhhCchHHHHccee-eeCCC-cHHHHHHHHH----HcCCC--hHHHHHHHHH-CC-CHHHHHHHh
Confidence 99999999999999966 67765 4444444443 34433 3333344443 44 455555554
No 261
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.16 E-value=2.1e-05 Score=80.65 Aligned_cols=163 Identities=23% Similarity=0.309 Sum_probs=98.8
Q ss_pred cccChHHHHHHHHHHHhchh-cchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc----c-----
Q 012000 217 DVAGLEKAKQALMEMVILPA-KRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS----L----- 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~-~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~----l----- 285 (473)
+|.|++++|+.|.-+++--. ..+. .+. .+-.-+|+|.|-||+.||-|.+.|.+-...-.+...-.. |
T Consensus 343 EIyGheDVKKaLLLlLVGgvd~~~~--dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGrGSSGVGLTAAVm 420 (721)
T KOG0482|consen 343 EIYGHEDVKKALLLLLVGGVDKSPG--DGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGRGSSGVGLTAAVM 420 (721)
T ss_pred hhccchHHHHHHHHHhhCCCCCCCC--CCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCCCCCccccchhhh
Confidence 58899999999987775311 1110 011 112346999999999999999999987654444332111 0
Q ss_pred ----chhhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHH-HhcCcCCCCCCcEEEEeecCCCC-------
Q 012000 286 ----TSKWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLI-QFDGVTSNPNDLVIVMGATNKPQ------- 350 (473)
Q Consensus 286 ----~~~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~-~ldg~~~~~~~~v~vI~tTn~~~------- 350 (473)
....+-++..++ ..|..|||++.+........+..+..+-+. .-.|+...-+.+.-|++++|+.+
T Consensus 421 kDpvTgEM~LEGGALVLAD~GICCIDEfDKM~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAANPayGRYnprr 500 (721)
T KOG0482|consen 421 KDPVTGEMVLEGGALVLADGGICCIDEFDKMDESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAANPAYGRYNPRR 500 (721)
T ss_pred cCCCCCeeEeccceEEEccCceEeehhhhhhhhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcCccccccCccc
Confidence 011111111111 234459999877655555555544444433 22455544456678899998765
Q ss_pred ------CCCHHHhcccccc-cccCCCcHHHHHHHHHHH
Q 012000 351 ------ELDDAVLRRLVKR-IYVPLPDENVRRLLLKHK 381 (473)
Q Consensus 351 ------~Ld~al~rRf~~~-i~~~~P~~~~r~~il~~~ 381 (473)
.|+.||++||+.. +..+.|+.+.-..+-++.
T Consensus 501 s~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~Hi 538 (721)
T KOG0482|consen 501 SPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHI 538 (721)
T ss_pred ChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHh
Confidence 6789999999954 456678777666665553
No 262
>KOG4509 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.16 E-value=4.4e-06 Score=73.98 Aligned_cols=69 Identities=19% Similarity=0.218 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCC-CCCCchhhhHHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPV-PSYISTSEHEKVKSYRQKISKWQSQV 121 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~-~~~~~~~~~~k~~~y~~raek~k~~i 121 (473)
....|--.+.+||+.|..|.|..|+.+|++||+++.++++.-+ +...+-.++.++..|++|++.+++.+
T Consensus 11 ~~~aAa~iL~~AVe~d~e~k~pqALl~YkeGIdLi~e~lk~~~ldna~R~~i~~k~s~Ym~ka~diekYL 80 (247)
T KOG4509|consen 11 LLKAAAPILCDAVEDDKEGKVPQALLCYKEGIDLIAEALKGMKLDNADRCKIMAKFSDYMDKAADIEKYL 80 (247)
T ss_pred hhhhhhhHHHHHhcccccccccHHHHHHhhhHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567888999999999999999999999999999999998664 66677889999999999999988774
No 263
>PRK09183 transposase/IS protein; Provisional
Probab=98.14 E-value=5e-06 Score=81.06 Aligned_cols=61 Identities=28% Similarity=0.342 Sum_probs=41.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhh-----h----h--hhhcceeeeeccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGE-----G----E--KLVRTLFMIDSIMST 309 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~-----~----~--~~~~~if~IDei~~~ 309 (473)
..+++|+||||||||+|+.+++.++ |..+..+++.++...+... . . .....++.||+++..
T Consensus 102 ~~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~~~~~dlLiiDdlg~~ 176 (259)
T PRK09183 102 NENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRGVMAPRLLIIDEIGYL 176 (259)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHHhcCCCEEEEcccccC
Confidence 4579999999999999999997664 6677777766665332110 0 0 112357789999543
No 264
>PHA02624 large T antigen; Provisional
Probab=98.12 E-value=7.7e-06 Score=86.78 Aligned_cols=119 Identities=18% Similarity=0.138 Sum_probs=68.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhhhhhhhcceeeeeccccccccCc---chHHHHHH
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGEGEKLVRTLFMIDSIMSTRMANE---NDASRRLK 322 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~~~~~~~~if~IDei~~~~~~~~---~~~~~~~~ 322 (473)
...+.++||||||||||+++.+|++.++...++|+++.-.+ -|.+-.... .+..||+......... .+..-..+
T Consensus 429 PKk~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt~ks~FwL~pl~D~--~~~l~dD~t~~~~~~~~Lp~G~~~dNl 506 (647)
T PHA02624 429 PKRRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQ--FMVVFEDVKGQPADNKDLPSGQGMNNL 506 (647)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCcchhHHHhhhhhhc--eEEEeeeccccccccccCCcccccchh
Confidence 33468999999999999999999999988888888654322 233333222 2333566643222110 00111112
Q ss_pred HHHHHHhcCc-CCC----CCC-----cEEEEeecCCCCCCCHHHhcccccccccCC
Q 012000 323 SEFLIQFDGV-TSN----PND-----LVIVMGATNKPQELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 323 ~~ll~~ldg~-~~~----~~~-----~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~ 368 (473)
.-|-..+||- ..+ ... --..|.|||. ..|+..+.-||..++.|..
T Consensus 507 ~~lRn~LDG~V~v~ld~KH~n~~q~~~PPlliT~Ne-y~iP~T~~~Rf~~~~~F~~ 561 (647)
T PHA02624 507 DNLRDYLDGSVPVNLEKKHLNKRSQIFPPGIVTMNE-YLIPQTVKARFAKVLDFKP 561 (647)
T ss_pred hHHHhhcCCCCccccchhccCchhccCCCeEEeecC-cccchhHHHHHHHhccccc
Confidence 3444556655 110 000 0123446664 6788888889999887765
No 265
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=98.11 E-value=7.5e-05 Score=73.92 Aligned_cols=196 Identities=22% Similarity=0.228 Sum_probs=118.8
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
.+...+...|+.+++.....+.+.+...- .......+|+.|..||||-.+|++.-... ..+|+.++|
T Consensus 194 ~~~~~~~~~F~~~v~~S~~mk~~v~qA~k----------~AmlDAPLLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNC 263 (511)
T COG3283 194 NVAAQDVSGFEQIVAVSPKMKHVVEQAQK----------LAMLDAPLLITGETGTGKDLLAKACHLASPRHSKPFLALNC 263 (511)
T ss_pred hcccccccchHHHhhccHHHHHHHHHHHH----------hhccCCCeEEecCCCchHHHHHHHHhhcCcccCCCeeEeec
Confidence 34455667889999987777766655431 12223459999999999999999986544 689999999
Q ss_pred Cccchh-----hhhh----------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCC-------CCcE
Q 012000 283 SSLTSK-----WVGE----------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------NDLV 340 (473)
Q Consensus 283 ~~l~~~-----~~g~----------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~-------~~~v 340 (473)
..+-.. .+|. .+..-...+++|+| .+.+-++...||..+..-.-+. .-.|
T Consensus 264 A~lPe~~aEsElFG~apg~~gk~GffE~AngGTVlLDeI--------gEmSp~lQaKLLRFL~DGtFRRVGee~Ev~vdV 335 (511)
T COG3283 264 ASLPEDAAESELFGHAPGDEGKKGFFEQANGGTVLLDEI--------GEMSPRLQAKLLRFLNDGTFRRVGEDHEVHVDV 335 (511)
T ss_pred CCCchhHhHHHHhcCCCCCCCccchhhhccCCeEEeehh--------hhcCHHHHHHHHHHhcCCceeecCCcceEEEEE
Confidence 876332 2222 22223344458999 5666778888888774322111 1248
Q ss_pred EEEeecCCCC-------CCCHHHhcccccccccCCCcHHHHH--------HHHHHHhccCCCC---CChhhHHHHHHHcC
Q 012000 341 IVMGATNKPQ-------ELDDAVLRRLVKRIYVPLPDENVRR--------LLLKHKLKGQAFS---LPGGDLERLVRETE 402 (473)
Q Consensus 341 ~vI~tTn~~~-------~Ld~al~rRf~~~i~~~~P~~~~r~--------~il~~~l~~~~~~---l~~~~l~~La~~t~ 402 (473)
.|||||..+- .+-..+.-|... +.+..|...+|. -++..+....++. ++...+..|-..-+
T Consensus 336 RVIcatq~nL~~lv~~g~fReDLfyRLNV-Ltl~~PpLRer~~di~pL~e~Fv~q~s~elg~p~pkl~~~~~~~L~~y~W 414 (511)
T COG3283 336 RVICATQVNLVELVQKGKFREDLFYRLNV-LTLNLPPLRERPQDIMPLAELFVQQFSDELGVPRPKLAADLLTVLTRYAW 414 (511)
T ss_pred EEEecccccHHHHHhcCchHHHHHHHhhe-eeecCCccccCcccchHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHcCC
Confidence 9999996532 222333335432 444555444432 2233344444443 35566677766544
Q ss_pred CCCHHHHHHHHHHHHHHh
Q 012000 403 GYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 403 g~s~~dL~~l~~~A~~~a 420 (473)
--.-++|.+.+-+|+...
T Consensus 415 pGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 415 PGNVRQLKNAIYRALTLL 432 (511)
T ss_pred CccHHHHHHHHHHHHHHh
Confidence 446789988888776553
No 266
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.11 E-value=0.00012 Score=85.83 Aligned_cols=71 Identities=27% Similarity=0.484 Sum_probs=52.1
Q ss_pred ChHHHHHhhhccccC---CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 012000 195 DSKLVEMINTAIVDR---SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 195 ~~~~~~~~~~~iv~~---~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
+.++.+.|...|..+ .+...+++++|.++..+.|.+++.+. ....+-+-|+||+|+||||||+++++
T Consensus 160 E~~~i~~Iv~~v~~~l~~~~~~~~~~~vG~~~~l~~l~~lL~l~----------~~~~~vvgI~G~gGiGKTTLA~~l~~ 229 (1153)
T PLN03210 160 EAKMIEEIANDVLGKLNLTPSNDFEDFVGIEDHIAKMSSLLHLE----------SEEVRMVGIWGSSGIGKTTIARALFS 229 (1153)
T ss_pred HHHHHHHHHHHHHHhhccccCcccccccchHHHHHHHHHHHccc----------cCceEEEEEEcCCCCchHHHHHHHHH
Confidence 345666555555444 35567899999999999998877421 12245688999999999999999988
Q ss_pred HcCC
Q 012000 272 ESQA 275 (473)
Q Consensus 272 e~~~ 275 (473)
.+..
T Consensus 230 ~l~~ 233 (1153)
T PLN03210 230 RLSR 233 (1153)
T ss_pred HHhh
Confidence 7643
No 267
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.09 E-value=1e-05 Score=67.84 Aligned_cols=54 Identities=22% Similarity=0.453 Sum_probs=34.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCC--------cEEEEec-Cccchhhhhhhhhhhcceeeeeccccccc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQA--------TFFNVSA-SSLTSKWVGEGEKLVRTLFMIDSIMSTRM 311 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~--------~~~~v~~-~~l~~~~~g~~~~~~~~if~IDei~~~~~ 311 (473)
|.||||||+|||+||+.||..+.. .++..++ .++.+.|. -..++.+||+.....
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~~~~~~~~~vy~~~~~~~~w~gY~------~q~vvi~DD~~~~~~ 63 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKHIGEPTKDSVYTRNPGDKFWDGYQ------GQPVVIIDDFGQDND 63 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHHhccCCCCcEEeCCCccchhhccC------CCcEEEEeecCcccc
Confidence 579999999999999999887642 2222221 22222222 235677999966553
No 268
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=2.2e-05 Score=86.96 Aligned_cols=119 Identities=26% Similarity=0.375 Sum_probs=82.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCC--CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccch---
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTS--- 287 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~--~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~--- 287 (473)
+.|+|++++..+|-+++..... ++. .|...+||.||.|+|||-||+++|..+ .-.++.++.+++..
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~------gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evsk 635 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRA------GLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSK 635 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhc------ccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhh
Confidence 3589999999999999974322 232 356779999999999999999999986 35688888875321
Q ss_pred ------hhhhhhh---------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCC-------CCcEEEEee
Q 012000 288 ------KWVGEGE---------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------NDLVIVMGA 345 (473)
Q Consensus 288 ------~~~g~~~---------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~-------~~~v~vI~t 345 (473)
.|+|..+ ..-..|+.||+| ..++..+.+.|++.+|.-.-.. -.+++||.|
T Consensus 636 ligsp~gyvG~e~gg~LteavrrrP~sVVLfdeI--------EkAh~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMT 707 (898)
T KOG1051|consen 636 LIGSPPGYVGKEEGGQLTEAVKRRPYSVVLFEEI--------EKAHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMT 707 (898)
T ss_pred ccCCCcccccchhHHHHHHHHhcCCceEEEEech--------hhcCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEe
Confidence 2333221 111368889999 4556677888888776432211 145889998
Q ss_pred cCC
Q 012000 346 TNK 348 (473)
Q Consensus 346 Tn~ 348 (473)
+|.
T Consensus 708 sn~ 710 (898)
T KOG1051|consen 708 SNV 710 (898)
T ss_pred ccc
Confidence 764
No 269
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.06 E-value=2.8e-05 Score=81.53 Aligned_cols=147 Identities=19% Similarity=0.266 Sum_probs=85.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC-------------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS------------- 283 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~------------- 283 (473)
.|.|++++|.++.-++.--...-..-.+..+-.-++||+|-||||||-+.+.+++-....++...-.
T Consensus 450 sIyGh~~VK~AvAlaLfGGv~kn~~~khkvRGDinvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~Kd 529 (854)
T KOG0477|consen 450 SIYGHEDVKRAVALALFGGVPKNPGGKHKVRGDINVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKD 529 (854)
T ss_pred hhhchHHHHHHHHHHHhcCCccCCCCCceeccceeEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeC
Confidence 4678888888887655321111000000011134699999999999999999998776555543211
Q ss_pred ccchhhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHHHh-cCcCCCCCCcEEEEeecCCCC---------
Q 012000 284 SLTSKWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLIQF-DGVTSNPNDLVIVMGATNKPQ--------- 350 (473)
Q Consensus 284 ~l~~~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l-dg~~~~~~~~v~vI~tTn~~~--------- 350 (473)
-+...|--++..++ +.+..|||++.+........+..+..+-+..- .|+...-..+..||+|+|+..
T Consensus 530 PvtrEWTLEaGALVLADkGvClIDEFDKMndqDRtSIHEAMEQQSISISKAGIVtsLqArctvIAAanPigGRY~~s~tF 609 (854)
T KOG0477|consen 530 PVTREWTLEAGALVLADKGVCLIDEFDKMNDQDRTSIHEAMEQQSISISKAGIVTSLQARCTVIAAANPIGGRYNPSLTF 609 (854)
T ss_pred CccceeeeccCeEEEccCceEEeehhhhhcccccchHHHHHHhcchhhhhhhHHHHHHhhhhhheecCCCCCccCCccch
Confidence 11223443333333 45666999998887665555554443322110 111111123467899998722
Q ss_pred ----CCCHHHhcccccc
Q 012000 351 ----ELDDAVLRRLVKR 363 (473)
Q Consensus 351 ----~Ld~al~rRf~~~ 363 (473)
+|..++++||+..
T Consensus 610 aqNV~ltePIlSRFDiL 626 (854)
T KOG0477|consen 610 AQNVDLTEPILSRFDIL 626 (854)
T ss_pred hhccccccchhhhccee
Confidence 5678999999854
No 270
>PHA00729 NTP-binding motif containing protein
Probab=98.03 E-value=5.2e-06 Score=78.46 Aligned_cols=25 Identities=36% Similarity=0.513 Sum_probs=23.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..++|+|+||||||+||.+||..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4799999999999999999999876
No 271
>PRK08118 topology modulation protein; Reviewed
Probab=97.97 E-value=2.3e-05 Score=71.18 Aligned_cols=101 Identities=19% Similarity=0.324 Sum_probs=62.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
.|+++||||+||||||+.|++.++.+++.++.--....|.. ...+....+..+++ .
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~~~w~~---------------------~~~~~~~~~~~~~~---~ 58 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWKPNWEG---------------------VPKEEQITVQNELV---K 58 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcC---------------------CCHHHHHHHHHHHh---c
Confidence 58999999999999999999999999887653211100100 00111111222222 1
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG 384 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~ 384 (473)
. +.+++ -.|.+..++.. +.+++..|++..|.......+++..+..
T Consensus 59 ----~--~~wVi--dG~~~~~~~~~-l~~~d~vi~Ld~p~~~~~~R~~~R~~~~ 103 (167)
T PRK08118 59 ----E--DEWII--DGNYGGTMDIR-LNAADTIIFLDIPRTICLYRAFKRRVQY 103 (167)
T ss_pred ----C--CCEEE--eCCcchHHHHH-HHhCCEEEEEeCCHHHHHHHHHHHHHHH
Confidence 1 12333 44455445433 3478999999999998888888887753
No 272
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.96 E-value=7.2e-06 Score=69.87 Aligned_cols=31 Identities=32% Similarity=0.629 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
|+|.||||+||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999988876654
No 273
>PF05729 NACHT: NACHT domain
Probab=97.95 E-value=5.1e-05 Score=67.83 Aligned_cols=129 Identities=21% Similarity=0.289 Sum_probs=66.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC---------CcEEEEecCccchh--------hh----hh------------hhhhh
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQ---------ATFFNVSASSLTSK--------WV----GE------------GEKLV 297 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~---------~~~~~v~~~~l~~~--------~~----g~------------~~~~~ 297 (473)
-++|+|+||+|||++++.++..+. ..++.+...+.... .+ .. ....-
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 488999999999999999998651 11222222221110 00 00 01122
Q ss_pred cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccc--cccccCCCcHHHHH
Q 012000 298 RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLV--KRIYVPLPDENVRR 375 (473)
Q Consensus 298 ~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~--~~i~~~~P~~~~r~ 375 (473)
+.+|.||.++.................+...+.... .++ +.+|.|+. +..... +.+++. ..+.++..+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~-~~~--~~liit~r-~~~~~~-~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQAL-PPG--VKLIITSR-PRAFPD-LRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhhhHHHHHHHHHHHHhhhcc-CCC--CeEEEEEc-CChHHH-HHHhcCCCcEEEECCCCHHHHH
Confidence 346668888665543222112222222323333211 112 33333343 222222 444333 34788888999999
Q ss_pred HHHHHHhcc
Q 012000 376 LLLKHKLKG 384 (473)
Q Consensus 376 ~il~~~l~~ 384 (473)
++++.+++.
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988764
No 274
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=97.95 E-value=0.00028 Score=72.35 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=38.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH----cCCcEEEEecCccchhhhhhhhh--hhcceeeeecccccccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSASSLTSKWVGEGEK--LVRTLFMIDSIMSTRMA 312 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e----~~~~~~~v~~~~l~~~~~g~~~~--~~~~if~IDei~~~~~~ 312 (473)
..++++.||||||||+++.+++.. .| -.++.+.++......... ....++.|||+......
T Consensus 209 ~~Nli~lGp~GTGKThla~~l~~~~a~~sG---~f~T~a~Lf~~L~~~~lg~v~~~DlLI~DEvgylp~~ 275 (449)
T TIGR02688 209 NYNLIELGPKGTGKSYIYNNLSPYVILISG---GTITVAKLFYNISTRQIGLVGRWDVVAFDEVATLKFA 275 (449)
T ss_pred CCcEEEECCCCCCHHHHHHHHhHHHHHHcC---CcCcHHHHHHHHHHHHHhhhccCCEEEEEcCCCCcCC
Confidence 468999999999999999998776 23 222333443322211111 12367789999775443
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.94 E-value=1.4e-05 Score=84.37 Aligned_cols=68 Identities=28% Similarity=0.508 Sum_probs=49.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-CcEEEE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-ATFFNV 280 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-~~~~~v 280 (473)
..+.++| -|+|+.|++++++.|.+.+.... .++....+-++|.||||+|||+||+.||+-+. .+++.+
T Consensus 67 ~~i~ry~--fF~d~yGlee~ieriv~~l~~Aa------~gl~~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~ 135 (644)
T PRK15455 67 RVIKRYP--AFEEFYGMEEAIEQIVSYFRHAA------QGLEEKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVL 135 (644)
T ss_pred ccccccc--chhcccCcHHHHHHHHHHHHHHH------HhcCCCCceEEEecCCCCCchHHHHHHHHHHHhCcceee
Confidence 4445555 68899999999999998874221 12333446788999999999999999998663 344444
No 276
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=97.92 E-value=2.6e-05 Score=79.49 Aligned_cols=93 Identities=23% Similarity=0.339 Sum_probs=53.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCC-cEEEEecCccchhhhhh--------------hhhhh--cceeeeeccccc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQA-TFFNVSASSLTSKWVGE--------------GEKLV--RTLFMIDSIMST 309 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~-~~~~v~~~~l~~~~~g~--------------~~~~~--~~if~IDei~~~ 309 (473)
.+++|++||||+|+|||+|.-.+...+.. .-..+....++...... ..... ..++.+||+.-.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh~Fm~~vh~~l~~~~~~~~~l~~va~~l~~~~~lLcfDEF~V~ 139 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFHEFMLDVHSRLHQLRGQDDPLPQVADELAKESRLLCFDEFQVT 139 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCccccccccccHHHHHHHHHHHHHhCCCccHHHHHHHHHhcCCEEEEeeeecc
Confidence 46899999999999999999999887754 11111111221111100 11111 236779998432
Q ss_pred cccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 310 RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
+-....++..|+..+- ..++++|+|+|++-
T Consensus 140 -----DiaDAmil~rLf~~l~------~~gvvlVaTSN~~P 169 (362)
T PF03969_consen 140 -----DIADAMILKRLFEALF------KRGVVLVATSNRPP 169 (362)
T ss_pred -----chhHHHHHHHHHHHHH------HCCCEEEecCCCCh
Confidence 2233445555655442 23378999998743
No 277
>PRK07261 topology modulation protein; Provisional
Probab=97.91 E-value=1.9e-05 Score=72.07 Aligned_cols=102 Identities=14% Similarity=0.217 Sum_probs=62.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFD 330 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ld 330 (473)
-|+++|+||+||||||+.|+..++.+++.++.-.....|. ... .......+...+.
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~~---------------------~~~---~~~~~~~~~~~~~ 57 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNWQ---------------------ERD---DDDMIADISNFLL 57 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEeccccc---------------------cCC---HHHHHHHHHHHHh
Confidence 3899999999999999999999998877654322111110 000 0111111111121
Q ss_pred CcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc
Q 012000 331 GVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG 384 (473)
Q Consensus 331 g~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~ 384 (473)
. +. .|| -.|....+-+..+.+++.+|.+..|-......+++..+..
T Consensus 58 ----~--~~-wIi-dg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 58 ----K--HD-WII-DGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred ----C--CC-EEE-cCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 1 22 333 3333333434555689999999999999898988887753
No 278
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=97.87 E-value=0.00043 Score=71.45 Aligned_cols=156 Identities=22% Similarity=0.293 Sum_probs=95.5
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe----cCccch---
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS----ASSLTS--- 287 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~----~~~l~~--- 287 (473)
.|.|.+++|+++.-++. -..+.....+ .+-.-++||.|-|||.||-|.+.+-.-...-++.-. +..|..
T Consensus 332 SIfG~~DiKkAiaClLF--gGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYTSGKGSSAAGLTASV~ 409 (729)
T KOG0481|consen 332 SIFGHEDIKKAIACLLF--GGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYTSGKGSSAAGLTASVI 409 (729)
T ss_pred hhcCchhHHHHHHHHhh--cCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEecCCCcccccceeeEE
Confidence 57899999999976552 1222222211 122346999999999999999998765544333211 111110
Q ss_pred ------hhhhhhhhhh---cceeeeeccccccccCcchHHHHHHHHHHH-HhcCcCCCCCCcEEEEeecCCCC-------
Q 012000 288 ------KWVGEGEKLV---RTLFMIDSIMSTRMANENDASRRLKSEFLI-QFDGVTSNPNDLVIVMGATNKPQ------- 350 (473)
Q Consensus 288 ------~~~g~~~~~~---~~if~IDei~~~~~~~~~~~~~~~~~~ll~-~ldg~~~~~~~~v~vI~tTn~~~------- 350 (473)
.+.-++...+ ..++.|||++.++.+..-..+..+..+.+. .-.|+...-+.+.-|++++|++.
T Consensus 410 RD~~tReFylEGGAMVLADgGVvCIDEFDKMre~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAANpvfGRyDd~K 489 (729)
T KOG0481|consen 410 RDPSTREFYLEGGAMVLADGGVVCIDEFDKMREDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAANPVFGRYDDTK 489 (729)
T ss_pred ecCCcceEEEecceEEEecCCEEEeehhhccCchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcCCccccccccC
Confidence 1111222222 356679999999988776666666665554 33466554456677899998754
Q ss_pred ------CCCHHHhcccccccccCCCcHHHH
Q 012000 351 ------ELDDAVLRRLVKRIYVPLPDENVR 374 (473)
Q Consensus 351 ------~Ld~al~rRf~~~i~~~~P~~~~r 374 (473)
++-+.+++||+.++-+.--..+++
T Consensus 490 t~~dNIDf~~TILSRFDmIFIVKD~h~~~~ 519 (729)
T KOG0481|consen 490 TGEDNIDFMPTILSRFDMIFIVKDEHDEER 519 (729)
T ss_pred CcccccchhhhHhhhccEEEEEeccCcchh
Confidence 234899999998665555444433
No 279
>PF13173 AAA_14: AAA domain
Probab=97.86 E-value=2.8e-05 Score=67.34 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=40.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC--CcEEEEecCccchhhh------hhhhhh---hcceeeeecccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSKWV------GEGEKL---VRTLFMIDSIMS 308 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~v~~~~l~~~~~------g~~~~~---~~~if~IDei~~ 308 (473)
+.++|+||+|||||++++.+++.+. ..++.++..+...... ...... -..+++|||+..
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iDEiq~ 72 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPDLLEYFLELIKPGKKYIFIDEIQY 72 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhhhHHHHHHhhccCCcEEEEehhhh
Confidence 4689999999999999999998876 6777777665433211 111111 246778999944
No 280
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=97.85 E-value=5.8e-05 Score=65.04 Aligned_cols=36 Identities=39% Similarity=0.600 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc--------CCcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES--------QATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~--------~~~~~~v~~~~ 284 (473)
.+.++++||||+|||++++.++..+ ..+++.+++..
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 47 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPS 47 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCC
Confidence 3579999999999999999999987 67777776543
No 281
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.82 E-value=2e-05 Score=71.39 Aligned_cols=33 Identities=21% Similarity=0.413 Sum_probs=29.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
++..|+|+||||||||++|+++|+.++.+++..
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 456899999999999999999999999988854
No 282
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=97.82 E-value=0.00027 Score=69.51 Aligned_cols=150 Identities=19% Similarity=0.138 Sum_probs=76.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH--cCCc---EEEEecCcc------chh---hhhhh-------------------
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASE--SQAT---FFNVSASSL------TSK---WVGEG------------------- 293 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e--~~~~---~~~v~~~~l------~~~---~~g~~------------------- 293 (473)
...+.|.|+|++|+|||+||+.+++. .... .+.++...- ... .++..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34567899999999999999999977 3322 122322211 000 00000
Q ss_pred -hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHH
Q 012000 294 -EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 294 -~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
-...+.++.+|++.... ....+...+... ..+..||.||....-.. ..... ...+.++..+.+
T Consensus 97 ~L~~~~~LlVlDdv~~~~----------~~~~l~~~~~~~----~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~L~~~ 160 (287)
T PF00931_consen 97 LLKDKRCLLVLDDVWDEE----------DLEELREPLPSF----SSGSKILVTTRDRSVAG-SLGGT-DKVIELEPLSEE 160 (287)
T ss_dssp HHCCTSEEEEEEEE-SHH----------HH-------HCH----HSS-EEEEEESCGGGGT-THHSC-EEEEECSS--HH
T ss_pred hhccccceeeeeeecccc----------cccccccccccc----ccccccccccccccccc-ccccc-cccccccccccc
Confidence 00114566788873211 112222222111 11244566775532211 11111 356889999999
Q ss_pred HHHHHHHHHhccCC---CCCChhhHHHHHHHcCCCCHHHHHHHH
Q 012000 373 VRRLLLKHKLKGQA---FSLPGGDLERLVRETEGYSGSDLQALC 413 (473)
Q Consensus 373 ~r~~il~~~l~~~~---~~l~~~~l~~La~~t~g~s~~dL~~l~ 413 (473)
+-.++|........ ....+.....|++.+.| .+-.|..+.
T Consensus 161 ea~~L~~~~~~~~~~~~~~~~~~~~~~i~~~c~g-lPLal~~~a 203 (287)
T PF00931_consen 161 EALELFKKRAGRKESESPEDLEDLAKEIVEKCGG-LPLALKLIA 203 (287)
T ss_dssp HHHHHHHHHHTSHS----TTSCTHHHHHHHHTTT--HHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 99999998876543 11124567889999988 455555443
No 283
>PRK13949 shikimate kinase; Provisional
Probab=97.82 E-value=4.6e-05 Score=69.39 Aligned_cols=103 Identities=19% Similarity=0.275 Sum_probs=58.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
+.|+|+||||+|||++++.+|+.++.+++..+ .++....+. .+..+|. + ......+.....++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D--~~i~~~~~~---~~~~~~~--~-------~g~~~fr~~e~~~l~~l 67 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD--FFIENRFHK---TVGDIFA--E-------RGEAVFRELERNMLHEV 67 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc--HHHHHHHCc---cHHHHHH--H-------hCHHHHHHHHHHHHHHH
Confidence 36999999999999999999999999988765 232221111 1112221 0 11223344555555554
Q ss_pred cCcCCCCCCcEEEEeecCCC--CCCCHHHhcccccccccCCCcHH
Q 012000 330 DGVTSNPNDLVIVMGATNKP--QELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~~--~~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
... .+ .||++-... ..-...++++++.+|++..|...
T Consensus 68 ~~~-----~~-~vis~Ggg~~~~~~~~~~l~~~~~vi~L~~~~~~ 106 (169)
T PRK13949 68 AEF-----ED-VVISTGGGAPCFFDNMELMNASGTTVYLKVSPEV 106 (169)
T ss_pred HhC-----CC-EEEEcCCcccCCHHHHHHHHhCCeEEEEECCHHH
Confidence 321 11 344433221 11124556667777888887665
No 284
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.77 E-value=0.00027 Score=81.17 Aligned_cols=127 Identities=20% Similarity=0.184 Sum_probs=85.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch------h-hhhh----hhh---------hhcceeeeecccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS------K-WVGE----GEK---------LVRTLFMIDSIMS 308 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~------~-~~g~----~~~---------~~~~if~IDei~~ 308 (473)
.+++||-|.||+|||+|+.|+|++.|-.++.++.++-.. . .+++ ..+ .-...+.+|++
T Consensus 1543 ~kpilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef~w~dapfL~amr~G~WVlLDEi-- 1620 (4600)
T COG5271 1543 GKPILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEFRWMDAPFLHAMRDGGWVLLDEI-- 1620 (4600)
T ss_pred CCceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCceeEecccHHHHHhhcCCEEEeehh--
Confidence 467999999999999999999999999999998764211 1 1111 111 11234458888
Q ss_pred ccccCcchHHHHHHHHHHHHhcCcCC----------CCCCcEEEEeecCCCC------CCCHHHhcccccccccCCCcHH
Q 012000 309 TRMANENDASRRLKSEFLIQFDGVTS----------NPNDLVIVMGATNKPQ------ELDDAVLRRLVKRIYVPLPDEN 372 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~ll~~ldg~~~----------~~~~~v~vI~tTn~~~------~Ld~al~rRf~~~i~~~~P~~~ 372 (473)
+-.+..++..|-.++|.... ....++.|.+|-|+-+ .|+..++.||.. +++...+.+
T Consensus 1621 ------NLaSQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRFsv-V~~d~lt~d 1693 (4600)
T COG5271 1621 ------NLASQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRFSV-VKMDGLTTD 1693 (4600)
T ss_pred ------hhhHHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhhhe-EEecccccc
Confidence 44444455555444442211 1123477887777644 689999999976 888888888
Q ss_pred HHHHHHHHHhcc
Q 012000 373 VRRLLLKHKLKG 384 (473)
Q Consensus 373 ~r~~il~~~l~~ 384 (473)
....|..+....
T Consensus 1694 Di~~Ia~~~yp~ 1705 (4600)
T COG5271 1694 DITHIANKMYPQ 1705 (4600)
T ss_pred hHHHHHHhhCCc
Confidence 888888776653
No 285
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=97.68 E-value=7.9e-05 Score=63.74 Aligned_cols=52 Identities=17% Similarity=0.242 Sum_probs=39.4
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.|.|++-+++.+..++...+..+. ...|--+-|+||||||||++++.||+.+
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~-----p~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPN-----PRKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCC-----CCCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 578999999999988875543321 1123345599999999999999999974
No 286
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=97.65 E-value=0.00043 Score=66.18 Aligned_cols=128 Identities=16% Similarity=0.123 Sum_probs=64.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh-hhh---hhhhhcceeeeeccccccccCcchHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW-VGE---GEKLVRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~-~g~---~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
.+-.++||+|||||.+++.+|..+|..++.++|++.++-. ++. +-........+||+.+...+.-.-....+ ..+
T Consensus 33 ~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~~~l~ril~G~~~~GaW~cfdefnrl~~~vLS~i~~~i-~~i 111 (231)
T PF12774_consen 33 LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDYQSLSRILKGLAQSGAWLCFDEFNRLSEEVLSVISQQI-QSI 111 (231)
T ss_dssp TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-HHHHHHHHHHHHHHT-EEEEETCCCSSHHHHHHHHHHH-HHH
T ss_pred CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccHHHHHHHHHHHhhcCchhhhhhhhhhhHHHHHHHHHHH-HHH
Confidence 4677899999999999999999999999999998765421 111 11223566678998654432211111111 111
Q ss_pred HHHhcCcCC---------CCCCcEEEEeecCCC----CCCCHHHhcccccccccCCCcHHHHHHHHH
Q 012000 326 LIQFDGVTS---------NPNDLVIVMGATNKP----QELDDAVLRRLVKRIYVPLPDENVRRLLLK 379 (473)
Q Consensus 326 l~~ldg~~~---------~~~~~v~vI~tTn~~----~~Ld~al~rRf~~~i~~~~P~~~~r~~il~ 379 (473)
...+..-.. .-+..+-+..|.|+. ..|++.++.-| +.+.+-.||.....+++-
T Consensus 112 ~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 112 QDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYAGRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp HHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CCCC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred HHhhcccccccccCCCEEEEccceeEEEeeccccCCcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 111111000 001123344455533 36777776666 558888999877766543
No 287
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=97.64 E-value=0.00021 Score=70.37 Aligned_cols=151 Identities=21% Similarity=0.294 Sum_probs=89.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH---HHHcCCcEEEEecCcc--chh--
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV---ASESQATFFNVSASSL--TSK-- 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~ai---A~e~~~~~~~v~~~~l--~~~-- 288 (473)
-.+.|..+..+.|.+++..-... .....+++.||.|+|||+|.... +++.|-+|+.|..... .++
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~--------gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~a 95 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILH--------GESNSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIA 95 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHh--------cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHH
Confidence 34678888888888877532221 22568999999999999977654 3366767766543221 110
Q ss_pred -----------------hhhhh-h---------------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC
Q 012000 289 -----------------WVGEG-E---------------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN 335 (473)
Q Consensus 289 -----------------~~g~~-~---------------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~ 335 (473)
.+|.. + ...+-+|.+||++..... ++ ..-+.+.+|-.. .
T Consensus 96 l~~I~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h-----~r--QtllYnlfDisq-s 167 (408)
T KOG2228|consen 96 LKGITRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH-----SR--QTLLYNLFDISQ-S 167 (408)
T ss_pred HHHHHHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc-----hh--hHHHHHHHHHHh-h
Confidence 00100 0 011235667788543321 11 222334444322 3
Q ss_pred CCCcEEEEeecCCCCCC---CHHHhcccccc-cccCC-CcHHHHHHHHHHHh
Q 012000 336 PNDLVIVMGATNKPQEL---DDAVLRRLVKR-IYVPL-PDENVRRLLLKHKL 382 (473)
Q Consensus 336 ~~~~v~vI~tTn~~~~L---d~al~rRf~~~-i~~~~-P~~~~r~~il~~~l 382 (473)
...++.|||.|.+.+-+ ...+.+||.++ |++++ ....+...+++..+
T Consensus 168 ~r~Piciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 168 ARAPICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cCCCeEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 45669999999876654 56777799966 55444 46788888888877
No 288
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=97.64 E-value=8.1e-05 Score=70.47 Aligned_cols=23 Identities=35% Similarity=0.609 Sum_probs=20.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
+.-+||||+||+|||++|+.++.
T Consensus 12 ~~~~liyG~~G~GKtt~a~~~~~ 34 (220)
T TIGR01618 12 PNMYLIYGKPGTGKTSTIKYLPG 34 (220)
T ss_pred CcEEEEECCCCCCHHHHHHhcCC
Confidence 45699999999999999999974
No 289
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.61 E-value=0.00028 Score=61.99 Aligned_cols=30 Identities=27% Similarity=0.554 Sum_probs=28.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
|++.|+||||||++|+.+|..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999998776
No 290
>PRK03839 putative kinase; Provisional
Probab=97.60 E-value=5.5e-05 Score=69.44 Aligned_cols=31 Identities=26% Similarity=0.473 Sum_probs=28.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+||+||||+++.+|+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999999988754
No 291
>PRK13947 shikimate kinase; Provisional
Probab=97.60 E-value=6.1e-05 Score=68.34 Aligned_cols=31 Identities=32% Similarity=0.503 Sum_probs=28.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 5999999999999999999999999998654
No 292
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.59 E-value=0.00062 Score=63.52 Aligned_cols=87 Identities=22% Similarity=0.311 Sum_probs=49.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh---------------hhhhhh---------hhhcceee
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---------------WVGEGE---------KLVRTLFM 302 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~---------------~~g~~~---------~~~~~if~ 302 (473)
+..+|.||||||||++++.++..+ +..++.+.+..-... +..... ..-..++.
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~~~vli 98 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPKKDVLI 98 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TSTSEEE
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCcccEEE
Confidence 468899999999999999987654 556666654422111 111000 12235777
Q ss_pred eeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 303 IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 303 IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
|||. +.........++..+.. .+.+++++|=.+.
T Consensus 99 VDEa--------smv~~~~~~~ll~~~~~----~~~klilvGD~~Q 132 (196)
T PF13604_consen 99 VDEA--------SMVDSRQLARLLRLAKK----SGAKLILVGDPNQ 132 (196)
T ss_dssp ESSG--------GG-BHHHHHHHHHHS-T-----T-EEEEEE-TTS
T ss_pred Eecc--------cccCHHHHHHHHHHHHh----cCCEEEEECCcch
Confidence 8988 44455556666665542 3456888876654
No 293
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=97.59 E-value=6.3e-05 Score=68.73 Aligned_cols=59 Identities=24% Similarity=0.369 Sum_probs=36.9
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc---EEEEecCcc
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT---FFNVSASSL 285 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~---~~~v~~~~l 285 (473)
++|.++..+.|...+. . .....++.++|+||+|+|||+|++++...+... ++.+++...
T Consensus 2 fvgR~~e~~~l~~~l~-~--------~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~~ 63 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-A--------AQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDDS 63 (185)
T ss_dssp -TT-HHHHHHHHHTTG-G--------TSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEETT
T ss_pred CCCHHHHHHHHHHHHH-H--------HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEecc
Confidence 6889999999988773 1 112335789999999999999999988766433 555555443
No 294
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.59 E-value=5.5e-05 Score=66.27 Aligned_cols=26 Identities=46% Similarity=0.793 Sum_probs=23.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
|+++|||||||||+|+.++..++..+
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~~~~ 27 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLGAVV 27 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHSTEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHCCCEE
Confidence 78999999999999999999998333
No 295
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=97.58 E-value=0.00012 Score=77.72 Aligned_cols=161 Identities=25% Similarity=0.283 Sum_probs=98.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc--CCcEEEEecCccchh-----hhhh----------------hhhhhcceeeeecc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES--QATFFNVSASSLTSK-----WVGE----------------GEKLVRTLFMIDSI 306 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~--~~~~~~v~~~~l~~~-----~~g~----------------~~~~~~~if~IDei 306 (473)
-.+||.|.|||||-.|++++-... ..+|+.|+|..+-.. ++|- .+..-...+++|+|
T Consensus 337 ~pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeI 416 (606)
T COG3284 337 LPVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEI 416 (606)
T ss_pred CCeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHh
Confidence 469999999999999999996654 579999998765332 2221 11122234558888
Q ss_pred ccccccCcchHHHHHHHHHHHHhcCcCC------CCCCcEEEEeecCCCCCCCHHHhc-ccccc-------cccCCCcHH
Q 012000 307 MSTRMANENDASRRLKSEFLIQFDGVTS------NPNDLVIVMGATNKPQELDDAVLR-RLVKR-------IYVPLPDEN 372 (473)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~ll~~ldg~~~------~~~~~v~vI~tTn~~~~Ld~al~r-Rf~~~-------i~~~~P~~~ 372 (473)
. +..-.+.+.||..+..-.. ..+-.|.||+||+++ |..-+.. ||.+- +.+.+|...
T Consensus 417 g--------d~p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~d--l~~lv~~g~fredLyyrL~~~~i~lP~lr 486 (606)
T COG3284 417 G--------DMPLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRD--LAQLVEQGRFREDLYYRLNAFVITLPPLR 486 (606)
T ss_pred h--------hchHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcC--HHHHHHcCCchHHHHHHhcCeeeccCchh
Confidence 3 3334455556655432110 012247899999863 3222222 55432 345556655
Q ss_pred HH---HHHHHHHhcc---CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 012000 373 VR---RLLLKHKLKG---QAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 373 ~r---~~il~~~l~~---~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a 420 (473)
+| ..++.+++.. .++.++++.+..|...-.--+-++|.++++.++..+
T Consensus 487 ~R~d~~~~l~~~~~~~~~~~~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~ 540 (606)
T COG3284 487 ERSDRIPLLDRILKRENDWRLQLDDDALARLLAYRWPGNIRELDNVIERLAALS 540 (606)
T ss_pred cccccHHHHHHHHHHccCCCccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcC
Confidence 54 4445555443 456778888887765543337899999999887664
No 296
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.56 E-value=6.3e-05 Score=65.64 Aligned_cols=32 Identities=31% Similarity=0.647 Sum_probs=29.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
..||++|-||||||+|+..||..++.+++.++
T Consensus 8 PNILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 8 PNILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CCEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 47999999999999999999999999999775
No 297
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.55 E-value=7.7e-05 Score=66.24 Aligned_cols=31 Identities=26% Similarity=0.488 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|+||||+|||++|+.+|..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 3899999999999999999999999988654
No 298
>PRK00625 shikimate kinase; Provisional
Probab=97.55 E-value=7.9e-05 Score=68.09 Aligned_cols=31 Identities=35% Similarity=0.524 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 4899999999999999999999999998765
No 299
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.54 E-value=0.0011 Score=63.18 Aligned_cols=65 Identities=22% Similarity=0.285 Sum_probs=50.7
Q ss_pred cccccccccCCCcHHHHHHHHHHHhccCCCC---CChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Q 012000 358 RRLVKRIYVPLPDENVRRLLLKHKLKGQAFS---LPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 358 rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~---l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
.||..+|.+++.+.++-...+++.++.-+.. +++..+..+...+.| .++-|.++|..|...+...
T Consensus 189 ~R~~ir~~l~P~~~~~t~~yl~~~Le~a~~~~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a 256 (269)
T COG3267 189 QRIDIRIELPPLTEAETGLYLRHRLEGAGLPEPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSA 256 (269)
T ss_pred heEEEEEecCCcChHHHHHHHHHHHhccCCCcccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHc
Confidence 3888778999999997777778877754322 256788889999999 6889999999998887554
No 300
>PRK14532 adenylate kinase; Provisional
Probab=97.52 E-value=8.7e-05 Score=68.57 Aligned_cols=36 Identities=33% Similarity=0.552 Sum_probs=29.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
.|+|.||||+||||+|+.||+.++..++ +..+++.+
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~i--s~~d~lr~ 37 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQL--STGDMLRA 37 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEE--eCcHHHHH
Confidence 4899999999999999999999987665 45555544
No 301
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.51 E-value=9e-05 Score=68.01 Aligned_cols=36 Identities=25% Similarity=0.368 Sum_probs=29.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
|+++||||+||||+|+.+|..++... ++..+++.+.
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~~--is~~d~lr~~ 37 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFTH--LSAGDLLRAE 37 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeE--EECChHHHHH
Confidence 78999999999999999999998654 4555665443
No 302
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.50 E-value=0.00046 Score=70.41 Aligned_cols=101 Identities=23% Similarity=0.344 Sum_probs=56.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc----C-CcEEEEecCccc-------h---hhhhh----------h-----hhhhc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES----Q-ATFFNVSASSLT-------S---KWVGE----------G-----EKLVR 298 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~----~-~~~~~v~~~~l~-------~---~~~g~----------~-----~~~~~ 298 (473)
...++|.||+|+||||++..||..+ + ..+..+....+. . ++.+. . +..-.
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~l~~~ 216 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAELRNK 216 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHHhcCC
Confidence 4578999999999999999998764 3 234334333221 0 00000 0 00113
Q ss_pred ceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHh
Q 012000 299 TLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVL 357 (473)
Q Consensus 299 ~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~ 357 (473)
.++.||...... .+....+.+..+.+.. .+...++|+.+|+..+.++..+.
T Consensus 217 DlVLIDTaG~~~-------~d~~l~e~La~L~~~~-~~~~~lLVLsAts~~~~l~evi~ 267 (374)
T PRK14722 217 HMVLIDTIGMSQ-------RDRTVSDQIAMLHGAD-TPVQRLLLLNATSHGDTLNEVVQ 267 (374)
T ss_pred CEEEEcCCCCCc-------ccHHHHHHHHHHhccC-CCCeEEEEecCccChHHHHHHHH
Confidence 566688874322 1122344444454332 23456888888888777765543
No 303
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=97.44 E-value=0.001 Score=64.74 Aligned_cols=52 Identities=23% Similarity=0.240 Sum_probs=38.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+.|++-+++.+...+...+..+. ...|-.+=|||++||||.++++.||+.+
T Consensus 83 ~lfGQHla~~~Vv~alk~~~~n~~-----p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 83 ALFGQHLAKQLVVNALKSHWANPN-----PRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HhhchHHHHHHHHHHHHHHhcCCC-----CCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 368898888888887764433322 1223345589999999999999999975
No 304
>PRK14531 adenylate kinase; Provisional
Probab=97.44 E-value=0.00014 Score=67.06 Aligned_cols=35 Identities=29% Similarity=0.537 Sum_probs=29.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
..|+++||||+||||+++.+|..+|.+++. ..+++
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~g~~~is--~gd~l 37 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAHGLRHLS--TGDLL 37 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeEe--cccHH
Confidence 359999999999999999999999977664 44444
No 305
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.43 E-value=0.00073 Score=67.24 Aligned_cols=30 Identities=40% Similarity=0.623 Sum_probs=25.8
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
..+++|+.||||-|+|||+|.-..-..+..
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~ 91 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPG 91 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCc
Confidence 457899999999999999999988877643
No 306
>PHA02774 E1; Provisional
Probab=97.43 E-value=0.0011 Score=70.40 Aligned_cols=73 Identities=18% Similarity=0.352 Sum_probs=45.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE-EecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN-VSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLI 327 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~-v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~ 327 (473)
.++++||||||||||++|.+|++.++..++. ++... .-|+.... -..+..+|++-.. ....+...|-.
T Consensus 434 knciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s--~FwLqpl~--d~ki~vlDD~t~~-------~w~y~d~~Lrn 502 (613)
T PHA02774 434 KNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKS--HFWLQPLA--DAKIALLDDATHP-------CWDYIDTYLRN 502 (613)
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECcc--ccccchhc--cCCEEEEecCcch-------HHHHHHHHHHH
Confidence 3689999999999999999999999766654 44322 11222211 1246678888211 12233334556
Q ss_pred HhcCc
Q 012000 328 QFDGV 332 (473)
Q Consensus 328 ~ldg~ 332 (473)
.+||-
T Consensus 503 ~LdG~ 507 (613)
T PHA02774 503 ALDGN 507 (613)
T ss_pred HcCCC
Confidence 66765
No 307
>PRK04040 adenylate kinase; Provisional
Probab=97.43 E-value=0.0011 Score=61.54 Aligned_cols=35 Identities=17% Similarity=0.295 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc--CCcEEEEecCcc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES--QATFFNVSASSL 285 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~--~~~~~~v~~~~l 285 (473)
+.-++++|+|||||||+++.++..+ +..++ +..++
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~~~~~~~--~~g~~ 38 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLKEDYKIV--NFGDV 38 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhccCCeEE--ecchH
Confidence 4568999999999999999999999 55554 44444
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=97.42 E-value=0.00028 Score=62.57 Aligned_cols=32 Identities=38% Similarity=0.585 Sum_probs=25.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
++|+||||+|||+++..++... +.+++.++..
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e 36 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIE 36 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECC
Confidence 7899999999999999998876 4556555543
No 309
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.42 E-value=0.00012 Score=66.13 Aligned_cols=32 Identities=25% Similarity=0.486 Sum_probs=29.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+.|+|.|++|+||||+.+++|+.++.+|+..+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999999654
No 310
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.42 E-value=0.00014 Score=64.53 Aligned_cols=28 Identities=32% Similarity=0.640 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
++|+|+||+||||+|+.++..++..++.
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i~ 29 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFID 29 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEEe
Confidence 6899999999999999999998876654
No 311
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.41 E-value=0.00014 Score=67.26 Aligned_cols=34 Identities=32% Similarity=0.578 Sum_probs=28.3
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
|+|+||||+|||++|+.||..++..++. ..+++.
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~--~~~l~~ 35 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIS--TGDLLR 35 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEE--CcHHHH
Confidence 7999999999999999999999877654 444443
No 312
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.40 E-value=4.3e-05 Score=68.49 Aligned_cols=30 Identities=27% Similarity=0.410 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
-|+++|.|||||||+++.++ ++|.+.+.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 47899999999999999999 9999888765
No 313
>PRK06217 hypothetical protein; Validated
Probab=97.40 E-value=0.00016 Score=66.70 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+||+||||++++|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 4899999999999999999999998877654
No 314
>PRK13948 shikimate kinase; Provisional
Probab=97.39 E-value=0.0002 Score=66.00 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.++..|+|.|++|||||++++.+|+.++.+|+..+
T Consensus 8 ~~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 8 RPVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 45688999999999999999999999999999655
No 315
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.39 E-value=0.00014 Score=66.41 Aligned_cols=36 Identities=25% Similarity=0.410 Sum_probs=30.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
+-|+|.||||+||||+|+.++..++..++.++..++
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~D~~ 38 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGVDSF 38 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCccHH
Confidence 468999999999999999999999887776655444
No 316
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.36 E-value=0.00016 Score=65.17 Aligned_cols=28 Identities=36% Similarity=0.633 Sum_probs=24.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
|+|.|||||||||+|+.++..++..++.
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v~ 28 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFIE 28 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 5789999999999999999999876653
No 317
>PRK14530 adenylate kinase; Provisional
Probab=97.34 E-value=0.0002 Score=67.71 Aligned_cols=30 Identities=30% Similarity=0.498 Sum_probs=27.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.||||+||||+++.||..++.+++..
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 699999999999999999999999877744
No 318
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.31 E-value=0.0002 Score=63.50 Aligned_cols=28 Identities=29% Similarity=0.514 Sum_probs=26.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
|-+.|||||||||+|+.||..+|.++++
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6688999999999999999999999885
No 319
>PRK08233 hypothetical protein; Provisional
Probab=97.30 E-value=0.0012 Score=60.36 Aligned_cols=32 Identities=16% Similarity=0.273 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC-CcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ-ATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~-~~~~~v~ 281 (473)
.-|.+.|+||+||||+|+.|+..++ ..++..+
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d 36 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLKNSKALYFD 36 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCCCCceEEEC
Confidence 3477889999999999999999985 4444443
No 320
>PRK06762 hypothetical protein; Provisional
Probab=97.28 E-value=0.00025 Score=64.08 Aligned_cols=34 Identities=26% Similarity=0.338 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
+.-++|+|+||+||||+|+.+++.++..++.++.
T Consensus 2 ~~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 2 TTLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 3568899999999999999999998655555554
No 321
>PRK06547 hypothetical protein; Provisional
Probab=97.27 E-value=0.00029 Score=64.28 Aligned_cols=33 Identities=30% Similarity=0.408 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
++.-|++.||+|||||++|+.+++.++..++..
T Consensus 14 ~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~ 46 (172)
T PRK06547 14 GMITVLIDGRSGSGKTTLAGALAARTGFQLVHL 46 (172)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCeecc
Confidence 356788999999999999999999988777654
No 322
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.27 E-value=0.00029 Score=63.98 Aligned_cols=32 Identities=31% Similarity=0.464 Sum_probs=28.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
..++|.|+||||||++++.+|..++.+++..+
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 35899999999999999999999999988653
No 323
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.26 E-value=0.00028 Score=67.47 Aligned_cols=35 Identities=26% Similarity=0.545 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
..|+|.||||+||||+|+.+|+.++.+++.+ .+++
T Consensus 7 mrIvl~G~PGsGK~T~a~~La~~~g~~~is~--gdll 41 (229)
T PTZ00088 7 LKIVLFGAPGVGKGTFAEILSKKENLKHINM--GNIL 41 (229)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEEC--ChHH
Confidence 3499999999999999999999999877754 4444
No 324
>PRK13946 shikimate kinase; Provisional
Probab=97.25 E-value=0.00026 Score=65.27 Aligned_cols=33 Identities=24% Similarity=0.461 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
++.|+|.|+||||||++++.+|+.+|.+|+..+
T Consensus 10 ~~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 10 KRTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 357999999999999999999999999998665
No 325
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.25 E-value=0.0013 Score=58.41 Aligned_cols=25 Identities=36% Similarity=0.545 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-++++||||+||||++.-++..+
T Consensus 5 ~mki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 5 AMKIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred ceEEEEeCCCCccHHHHHHHHHHHH
Confidence 3569999999999999999999876
No 326
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0017 Score=65.13 Aligned_cols=85 Identities=14% Similarity=0.207 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-C-CCCCchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012000 48 YKLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-V-PSYISTSEHEKVKSYRQKISKWQSQVSDRL 125 (473)
Q Consensus 48 ~~~k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~-~~~~~~~~~~k~~~y~~raek~k~~i~~rl 125 (473)
+-++.-|..|+-.+.+++-.||-++.++|+..|.+||.++.+++.+- + ....+...|+.+..+.+++.+-+..++.|+
T Consensus 13 a~Ir~ayk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~GIpvg~k~k~~~~~~~W~dAcaliQklkes~~~vr~Rl 92 (560)
T KOG2709|consen 13 AQIRAAYKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIVEGIPVGEKMKNARKSEMWKDACALIQKLKESKSSVRHRL 92 (560)
T ss_pred HHHHHHHHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHhcCcccccccccccchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 45677889999999999999999999999999999999999987643 2 334678899999999999999999999999
Q ss_pred HHHhhhh
Q 012000 126 QALNRRA 132 (473)
Q Consensus 126 ~~l~~~~ 132 (473)
+.|++..
T Consensus 93 ~vL~kqk 99 (560)
T KOG2709|consen 93 NVLKKQK 99 (560)
T ss_pred HHHHhhh
Confidence 9999754
No 327
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.25 E-value=0.00032 Score=64.06 Aligned_cols=34 Identities=26% Similarity=0.644 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
...|+|.||+|+|||++++.+|..++.+++..+.
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 3579999999999999999999999999887653
No 328
>PLN02200 adenylate kinase family protein
Probab=97.23 E-value=0.00036 Score=67.02 Aligned_cols=38 Identities=21% Similarity=0.317 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
+.-|++.|||||||||+|+.+|..++.. .++..+++.+
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdllR~ 80 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDLLRR 80 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHHHHH
Confidence 4568999999999999999999999865 4566666544
No 329
>PRK14528 adenylate kinase; Provisional
Probab=97.23 E-value=0.00031 Score=64.97 Aligned_cols=31 Identities=26% Similarity=0.552 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.+++.||||+|||++|+.+|..++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999999877653
No 330
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.23 E-value=0.0016 Score=60.63 Aligned_cols=141 Identities=24% Similarity=0.259 Sum_probs=61.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh-hhhh-----h-hhhcceeeeeccccccccCcchHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW-VGEG-----E-KLVRTLFMIDSIMSTRMANENDASRRLKS 323 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~-~g~~-----~-~~~~~if~IDei~~~~~~~~~~~~~~~~~ 323 (473)
-++|+||+|||||.+|-++|+.+|.+++..+.-.+.... ++.+ + +.++.+ ++|+..-..+. -.......
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~el~~~~Ri-yL~~r~l~~G~---i~a~ea~~ 78 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPSELKGTRRI-YLDDRPLSDGI---INAEEAHE 78 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SGGGTT-EEE-ES----GGG-S-----HHHHHH
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHHHHccccee-eeccccccCCC---cCHHHHHH
Confidence 478999999999999999999999999999866543332 1211 1 112333 35544222211 11223344
Q ss_pred HHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhc-----ccc-cccccCCCcHHHHHHHHH----HHhccCCCCCChhh
Q 012000 324 EFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR-----RLV-KRIYVPLPDENVRRLLLK----HKLKGQAFSLPGGD 393 (473)
Q Consensus 324 ~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~r-----Rf~-~~i~~~~P~~~~r~~il~----~~l~~~~~~l~~~~ 393 (473)
.|+..++.... .+.+++=|-+. ..|..-..+ .|. .+..+++|+.+....-.+ .+|... .-....
T Consensus 79 ~Li~~v~~~~~--~~~~IlEGGSI--SLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p~--~~~~Sl 152 (233)
T PF01745_consen 79 RLISEVNSYSA--HGGLILEGGSI--SLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRPD--SSGPSL 152 (233)
T ss_dssp HHHHHHHTTTT--SSEEEEEE--H--HHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS----SSS--H
T ss_pred HHHHHHHhccc--cCceEEeCchH--HHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCCC--CCCCcH
Confidence 55556665553 23344434332 111111222 233 334778888876543333 333221 112356
Q ss_pred HHHHHHHc
Q 012000 394 LERLVRET 401 (473)
Q Consensus 394 l~~La~~t 401 (473)
+++|+...
T Consensus 153 l~EL~~lW 160 (233)
T PF01745_consen 153 LEELVALW 160 (233)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77776653
No 331
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.22 E-value=0.0023 Score=65.33 Aligned_cols=60 Identities=20% Similarity=0.273 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
...+++.+.+.+...+..+..+ ...++-|+|.||+|+||||++..||..+ +..+..+++.
T Consensus 216 ~~~~~~~l~~~l~~~l~~~~~~---~~~~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 216 EEEVIEYILEDMRSHFNTENVF---EKEVQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred HHHHHHHHHHHHHHHhcccccc---ccCCcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 4566667766664433322211 1224679999999999999999999866 3344444443
No 332
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.21 E-value=0.0003 Score=66.26 Aligned_cols=33 Identities=36% Similarity=0.622 Sum_probs=27.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
|+|+||||+||||+|+.||..++...+. ..+++
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is--~gdll 34 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIS--TGDLL 34 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeee--hhHHH
Confidence 7899999999999999999999877665 34444
No 333
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.20 E-value=0.0015 Score=61.35 Aligned_cols=39 Identities=21% Similarity=0.397 Sum_probs=29.6
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
..+..-++++||||||||+++..++... +...+.++...
T Consensus 9 i~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 9 VERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 3445668999999999999999988643 55677776654
No 334
>PRK02496 adk adenylate kinase; Provisional
Probab=97.20 E-value=0.00031 Score=64.65 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=26.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
-++|.||||+|||++++.||..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776644
No 335
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.20 E-value=0.00034 Score=64.24 Aligned_cols=30 Identities=20% Similarity=0.429 Sum_probs=25.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.-++|.||||+||||+++.++..+|...+.
T Consensus 4 ~ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 4 KIIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 358899999999999999999999866553
No 336
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.18 E-value=0.0057 Score=70.99 Aligned_cols=141 Identities=19% Similarity=0.269 Sum_probs=86.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc--hhhhhh----h------------hhhh-cceeeeecccccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT--SKWVGE----G------------EKLV-RTLFMIDSIMSTR 310 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~--~~~~g~----~------------~~~~-~~if~IDei~~~~ 310 (473)
-.+||.||..+|||+++..+|.+.|..|+.++-.+.. ..|+|. . +..- ...+.+|++.-
T Consensus 889 fP~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd~G~lsFkEGvLVeAlR~GyWIVLDELNL-- 966 (4600)
T COG5271 889 FPLLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDDDGSLSFKEGVLVEALRRGYWIVLDELNL-- 966 (4600)
T ss_pred CcEEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecCCCceeeehhHHHHHHhcCcEEEeecccc--
Confidence 3599999999999999999999999999999866442 223332 1 1111 12444898832
Q ss_pred ccCcchHHHHHHHHHHHHhcCcC----------CCCCCcEEEEeecCCCC------CCCHHHhcccccccccCCCcHHHH
Q 012000 311 MANENDASRRLKSEFLIQFDGVT----------SNPNDLVIVMGATNKPQ------ELDDAVLRRLVKRIYVPLPDENVR 374 (473)
Q Consensus 311 ~~~~~~~~~~~~~~ll~~ldg~~----------~~~~~~v~vI~tTn~~~------~Ld~al~rRf~~~i~~~~P~~~~r 374 (473)
+...++..|-..+|.-. ..+...+++.+|-|+|. -|..|++.||.. ++|.--..++.
T Consensus 967 ------ApTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQNppg~YgGRK~LSrAFRNRFlE-~hFddipedEl 1039 (4600)
T COG5271 967 ------APTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQNPPGGYGGRKGLSRAFRNRFLE-MHFDDIPEDEL 1039 (4600)
T ss_pred ------CcHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecCCCccccchHHHHHHHHhhhHh-hhcccCcHHHH
Confidence 22333333333333210 12234577778878776 467899999977 66666666777
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHcCCC
Q 012000 375 RLLLKHKLKGQAFSLPGGDLERLVRETEGY 404 (473)
Q Consensus 375 ~~il~~~l~~~~~~l~~~~l~~La~~t~g~ 404 (473)
..|+... +++++.-...+.+...|.
T Consensus 1040 e~ILh~r-----c~iapSyakKiVeVyr~L 1064 (4600)
T COG5271 1040 EEILHGR-----CEIAPSYAKKIVEVYRGL 1064 (4600)
T ss_pred HHHHhcc-----CccCHHHHHHHHHHHHHh
Confidence 7776644 344555555555444443
No 337
>PF13245 AAA_19: Part of AAA domain
Probab=97.18 E-value=0.00066 Score=53.16 Aligned_cols=24 Identities=42% Similarity=0.618 Sum_probs=17.5
Q ss_pred ceEEEEcCCCCcHH-HHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKT-MLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT-~La~aiA~e~ 273 (473)
..+++.|||||||| ++++.++...
T Consensus 11 ~~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 11 PLFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34666999999999 5556665554
No 338
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.16 E-value=0.00069 Score=67.83 Aligned_cols=36 Identities=25% Similarity=0.445 Sum_probs=31.7
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
..+...|+|.|+||||||++++.+|..+|.+|+.++
T Consensus 130 ~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 130 AARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred ccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 345678999999999999999999999999999543
No 339
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.16 E-value=0.00038 Score=65.86 Aligned_cols=35 Identities=31% Similarity=0.549 Sum_probs=28.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
-|+++||||+||||+|+.||..++...+. ..+++.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is--~~dl~r 36 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS--TGDMLR 36 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE--CCccHH
Confidence 38999999999999999999999976665 444543
No 340
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.15 E-value=0.0031 Score=61.86 Aligned_cols=108 Identities=22% Similarity=0.268 Sum_probs=78.3
Q ss_pred CCcEEEEeec--CCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc------CCCCCChhhHHHHHHHcCCCCHHH
Q 012000 337 NDLVIVMGAT--NKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG------QAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 337 ~~~v~vI~tT--n~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~------~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
++.|++|||| |+-..+.++|++|+ +++.+..++.++...+++..+.. ..+.++++.+..|+..+.|..+.-
T Consensus 6 ~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~~~~~i~~~al~~ia~~a~GDaR~a 84 (300)
T PRK14700 6 SGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAKHKFKIDDGLYNAMHNYNEGDCRKI 84 (300)
T ss_pred CCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCCcCCCcCHHHHHHHHHhcCCHHHHH
Confidence 4568888887 77789999999999 55899999999999999998864 236789999999999999955544
Q ss_pred HHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 409 LQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 409 L~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
|. +++.|+... . ......||.+++++++.+....+.+
T Consensus 85 LN-~LE~a~~~~-----~------~~~~~~it~~~~~~~~~~~~~~yDk 121 (300)
T PRK14700 85 LN-LLERMFLIS-----T------RGDEIYLNKELFDQAVGETSRDFHR 121 (300)
T ss_pred HH-HHHHHHhhc-----c------ccCCCccCHHHHHHHHhHHHhcccC
Confidence 43 344433211 0 0011248999999988765555544
No 341
>PLN02840 tRNA dimethylallyltransferase
Probab=97.14 E-value=0.0056 Score=63.26 Aligned_cols=36 Identities=22% Similarity=0.427 Sum_probs=31.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
..-|+|.||+|+|||+||..||.+++..++.++.-.
T Consensus 21 ~~vi~I~GptgsGKTtla~~La~~~~~~iis~Ds~q 56 (421)
T PLN02840 21 EKVIVISGPTGAGKSRLALELAKRLNGEIISADSVQ 56 (421)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHCCCCeEeccccc
Confidence 345889999999999999999999999888776543
No 342
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=97.13 E-value=0.00057 Score=64.55 Aligned_cols=22 Identities=36% Similarity=0.678 Sum_probs=17.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 012000 252 LLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+++||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8899999999998777766654
No 343
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.13 E-value=0.001 Score=61.38 Aligned_cols=24 Identities=46% Similarity=0.670 Sum_probs=22.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
-|+|.|+||+|||++|+-+|+++.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 388999999999999999999884
No 344
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0033 Score=70.17 Aligned_cols=188 Identities=21% Similarity=0.266 Sum_probs=109.2
Q ss_pred CcccccCh-HHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------CCcEEEEec
Q 012000 214 KWEDVAGL-EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSA 282 (473)
Q Consensus 214 ~~~divGl-~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~~v~~ 282 (473)
.++-++|. ++-.+.+.+.+. +...++-+|.|.||+|||.++.-+|+.. +..++.++.
T Consensus 184 kldPvigr~deeirRvi~iL~------------Rrtk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~ 251 (898)
T KOG1051|consen 184 KLDPVIGRHDEEIRRVIEILS------------RKTKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDF 251 (898)
T ss_pred CCCCccCCchHHHHHHHHHHh------------ccCCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEh
Confidence 35667775 444444444442 1223678999999999999999999865 345555655
Q ss_pred Cccch--hhhhhhhhhh------------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 283 SSLTS--KWVGEGEKLV------------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 283 ~~l~~--~~~g~~~~~~------------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
..++. ++-|+.+..+ ..|++|||++-.-..+.+...- ....+|..+-. .+.+.+||||..
T Consensus 252 g~l~aGa~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~~~-d~~nlLkp~L~-----rg~l~~IGatT~ 325 (898)
T KOG1051|consen 252 GSLVAGAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYGAI-DAANLLKPLLA-----RGGLWCIGATTL 325 (898)
T ss_pred hhcccCcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcchHH-HHHHhhHHHHh-----cCCeEEEecccH
Confidence 43332 2333333322 3577899998766655442211 12223333321 222889988863
Q ss_pred CC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHH-----cCCCCHHHHHHHHH
Q 012000 349 PQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRE-----TEGYSGSDLQALCE 414 (473)
Q Consensus 349 ~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~-----t~g~s~~dL~~l~~ 414 (473)
-. .-+|++-+||+. +.++.|+.+.-..+|...-.. ++..+.+..+...+.. +..+-+.-...+++
T Consensus 326 e~Y~k~iekdPalErrw~l-~~v~~pS~~~~~~iL~~l~~~~e~~hg~~~s~~a~~~a~~~s~~~~t~r~lpd~aidl~d 404 (898)
T KOG1051|consen 326 ETYRKCIEKDPALERRWQL-VLVPIPSVENLSLILPGLSERYEVHHGVRISDESLFSAAQLSARYITLSFLPDCAIDLED 404 (898)
T ss_pred HHHHHHHhhCcchhhCcce-eEeccCcccchhhhhhhhhhhhccccCCcccccccccccchhhhhcccCcCchhcccHHH
Confidence 22 348999999987 788888877655555544333 3444444443333322 33445666667777
Q ss_pred HHHHHh
Q 012000 415 EAAMMP 420 (473)
Q Consensus 415 ~A~~~a 420 (473)
+|+...
T Consensus 405 Ea~a~~ 410 (898)
T KOG1051|consen 405 EAAALV 410 (898)
T ss_pred HHHHHH
Confidence 776543
No 345
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.09 E-value=0.0049 Score=63.39 Aligned_cols=57 Identities=21% Similarity=0.288 Sum_probs=33.9
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+++...+.+++.+.+.+...+....... ....+..++|+||+|+||||++.-+|..+
T Consensus 142 ~~~~~~~~v~~~l~~~l~~~i~~~~~~~-~~~~~~vi~lvGptGvGKTTT~aKLA~~~ 198 (388)
T PRK12723 142 SDLDDYDKVRDSVIIYIAKTIKCSGSII-DNLKKRVFILVGPTGVGKTTTIAKLAAIY 198 (388)
T ss_pred hhcCCHHHHHHHHHHHHHHHhhccCccc-cCCCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3333455566666555432221111010 11224679999999999999999998765
No 346
>PRK14527 adenylate kinase; Provisional
Probab=97.09 E-value=0.00043 Score=64.22 Aligned_cols=31 Identities=29% Similarity=0.524 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
+.-++++||||+||||+|+.+|..++...+.
T Consensus 6 ~~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 6 NKVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 4569999999999999999999999876553
No 347
>PRK10867 signal recognition particle protein; Provisional
Probab=97.08 E-value=0.0033 Score=65.59 Aligned_cols=38 Identities=26% Similarity=0.383 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~~ 284 (473)
.+|.-++++||+|+||||++..+|..+ +..+..+++..
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~ 139 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADV 139 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEccc
Confidence 346789999999999999777777644 55666666543
No 348
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=97.07 E-value=0.0033 Score=58.09 Aligned_cols=30 Identities=23% Similarity=0.249 Sum_probs=24.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc-CCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASES-QATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~ 281 (473)
|.+.|+|||||||+|+.|+..+ +..++..+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~~~~~~i~~D 32 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRILPNCCVIHQD 32 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeEEccc
Confidence 6789999999999999999998 45554433
No 349
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=97.07 E-value=0.00039 Score=61.84 Aligned_cols=35 Identities=31% Similarity=0.524 Sum_probs=27.6
Q ss_pred EEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhh
Q 012000 254 LFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWV 290 (473)
Q Consensus 254 L~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~ 290 (473)
|.||||+|||++|+.||.+++... ++..+++...+
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~--is~~~llr~~~ 35 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVH--ISVGDLLREEI 35 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEE--EEHHHHHHHHH
T ss_pred CcCCCCCChHHHHHHHHHhcCcce--echHHHHHHHH
Confidence 689999999999999999998654 45566655443
No 350
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.06 E-value=0.00043 Score=59.07 Aligned_cols=22 Identities=41% Similarity=0.611 Sum_probs=21.0
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 012000 252 LLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~ 273 (473)
|+|.|+|||||||+|+.|+.++
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999997
No 351
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.05 E-value=0.00057 Score=62.73 Aligned_cols=28 Identities=39% Similarity=0.736 Sum_probs=23.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.|+|.||||+||||+|+.||+.++.+-+
T Consensus 2 riiilG~pGaGK~T~A~~La~~~~i~hl 29 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKLGLPHL 29 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEE
Confidence 4899999999999999999999654433
No 352
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=97.05 E-value=0.00087 Score=76.57 Aligned_cols=171 Identities=18% Similarity=0.185 Sum_probs=94.2
Q ss_pred CCCCceEEEEcCCCCcHHHH-HHHHHHHcCCcEEEEecCccch-h-hhh---hhhhh--------------h-cceeeee
Q 012000 246 RRPARGLLLFGPPGNGKTML-AKAVASESQATFFNVSASSLTS-K-WVG---EGEKL--------------V-RTLFMID 304 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~L-a~aiA~e~~~~~~~v~~~~l~~-~-~~g---~~~~~--------------~-~~if~ID 304 (473)
....++++++||||+|||+| .-++-++.-..++.++.+.... + .+. ..... + .-+++.|
T Consensus 1491 lnt~R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcD 1570 (3164)
T COG5245 1491 LNTLRSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMTPSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCD 1570 (3164)
T ss_pred HhccceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCCHHHHHHHHhhceeeccCCeEEEccCcchhheEEEee
Confidence 34468999999999999995 5677777766776666443211 1 111 10000 1 1366789
Q ss_pred ccccccccCcchHHHHHHHHHHHHhcCcCCCC------CCcEEEEeecCCCCCCC-----HHHhcccccccccCCCcHHH
Q 012000 305 SIMSTRMANENDASRRLKSEFLIQFDGVTSNP------NDLVIVMGATNKPQELD-----DAVLRRLVKRIYVPLPDENV 373 (473)
Q Consensus 305 ei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~------~~~v~vI~tTn~~~~Ld-----~al~rRf~~~i~~~~P~~~~ 373 (473)
+|.-.....--....-....-+.+-.|+.... -.++++.|++|++.+.. ..++|| ...+++..|....
T Consensus 1571 eInLp~~~~y~~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~-~v~vf~~ype~~S 1649 (3164)
T COG5245 1571 EINLPYGFEYYPPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRK-PVFVFCCYPELAS 1649 (3164)
T ss_pred ccCCccccccCCCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcC-ceEEEecCcchhh
Confidence 99644432111100000111111222332211 24589999999988653 334433 2457899999999
Q ss_pred HHHHHHHHhccCCCCCC------hhh-------HHHH-------HHHcCCCCHHHHHHHHHHHH
Q 012000 374 RRLLLKHKLKGQAFSLP------GGD-------LERL-------VRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 374 r~~il~~~l~~~~~~l~------~~~-------l~~L-------a~~t~g~s~~dL~~l~~~A~ 417 (473)
...|++.++.+.-+-.+ +.. +... .+..-||+|++|...++..-
T Consensus 1650 L~~Iyea~l~~s~l~~~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~ 1713 (3164)
T COG5245 1650 LRNIYEAVLMGSYLCFDEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIF 1713 (3164)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHH
Confidence 99999987765332211 110 0111 11235799999988877543
No 353
>PRK00091 miaA tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed
Probab=97.05 E-value=0.0024 Score=63.70 Aligned_cols=35 Identities=23% Similarity=0.435 Sum_probs=30.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.-+++.||+|||||+||..||.+++..+++.+.-.
T Consensus 5 ~~i~i~GptgsGKt~la~~la~~~~~~iis~Ds~Q 39 (307)
T PRK00091 5 KVIVIVGPTASGKTALAIELAKRLNGEIISADSMQ 39 (307)
T ss_pred eEEEEECCCCcCHHHHHHHHHHhCCCcEEeccccc
Confidence 56899999999999999999999999888776543
No 354
>PRK05480 uridine/cytidine kinase; Provisional
Probab=97.03 E-value=0.0061 Score=57.26 Aligned_cols=35 Identities=20% Similarity=0.239 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC-cEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA-TFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~-~~~~v~~~ 283 (473)
+.-|.|.||+|||||||+++|+..++. .+..++..
T Consensus 6 ~~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D 41 (209)
T PRK05480 6 PIIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQD 41 (209)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCC
Confidence 456889999999999999999999842 33344443
No 355
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.03 E-value=0.00052 Score=64.01 Aligned_cols=25 Identities=32% Similarity=0.488 Sum_probs=21.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
|+-++|.||+|+||||.+--+|..+
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~ 25 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARL 25 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHH
Confidence 4678999999999999888887765
No 356
>COG1855 ATPase (PilT family) [General function prediction only]
Probab=97.03 E-value=0.00033 Score=71.35 Aligned_cols=50 Identities=34% Similarity=0.452 Sum_probs=40.7
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+...-.++++|....+.+++.|.+.. .|||+.||||.||||+|+|+|.-+
T Consensus 238 vRPvvk~~ledY~L~dkl~eRL~era-----------------eGILIAG~PGaGKsTFaqAlAefy 287 (604)
T COG1855 238 VRPVVKLSLEDYGLSDKLKERLEERA-----------------EGILIAGAPGAGKSTFAQALAEFY 287 (604)
T ss_pred EeeeEEechhhcCCCHHHHHHHHhhh-----------------cceEEecCCCCChhHHHHHHHHHH
Confidence 33333467888888888888887654 599999999999999999999866
No 357
>PLN02674 adenylate kinase
Probab=97.01 E-value=0.0007 Score=65.16 Aligned_cols=38 Identities=24% Similarity=0.482 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
...|+|.||||+||+|+++.||..++...+ +..+++..
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi--s~GdllR~ 68 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL--ATGDMLRA 68 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE--chhHHHHH
Confidence 456999999999999999999999986555 44555443
No 358
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=96.99 E-value=0.00088 Score=51.34 Aligned_cols=22 Identities=32% Similarity=0.558 Sum_probs=20.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc
Q 012000 252 LLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.+.|+||+|||+++++++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6789999999999999999986
No 359
>PRK01184 hypothetical protein; Provisional
Probab=96.98 E-value=0.0007 Score=62.26 Aligned_cols=35 Identities=23% Similarity=0.350 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
-|+|+||||+||||+++ ++++++.+++.. .+++.+
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~--~d~lr~ 37 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM--GDVIRE 37 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh--hHHHHH
Confidence 47899999999999998 788999877654 455443
No 360
>PRK14526 adenylate kinase; Provisional
Probab=96.97 E-value=0.00074 Score=63.75 Aligned_cols=34 Identities=35% Similarity=0.608 Sum_probs=27.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
.++|+|||||||||+++.+|..++..++ +..+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i--s~G~ll 35 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI--STGDLF 35 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee--ecChHH
Confidence 3889999999999999999999987665 444543
No 361
>PRK06696 uridine kinase; Validated
Probab=96.95 E-value=0.0022 Score=61.09 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=31.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
+.-|.+.|++|+||||||+.|+..+ +.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 4568899999999999999999998 6677776666654
No 362
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.93 E-value=0.00085 Score=66.70 Aligned_cols=29 Identities=31% Similarity=0.523 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc-CCcEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES-QATFF 278 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~-~~~~~ 278 (473)
.-++|.|||||||||+|+.+++.+ +..++
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~~~~~~l 32 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKNPKAVNV 32 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHCCCCEEE
Confidence 458899999999999999999998 55444
No 363
>PRK04132 replication factor C small subunit; Provisional
Probab=96.92 E-value=0.00054 Score=76.51 Aligned_cols=49 Identities=29% Similarity=0.460 Sum_probs=40.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHH
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTML 265 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~L 265 (473)
..+++++|.+|+||+|++.+++.|+.++.. . ...+++|+||||+||+..
T Consensus 8 ~~~~k~RP~~f~dIiGqe~i~~~Lk~~i~~-----------~-~i~h~l~~g~~g~~~cl~ 56 (846)
T PRK04132 8 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------G-SMPHLLFAGPPGVGKCLT 56 (846)
T ss_pred cHHHhhCCCCHHHhcCcHHHHHHHHHHHHc-----------C-CCCeEEEECCCCCCcccc
Confidence 556788999999999999999999999852 1 234588999999999754
No 364
>PRK04182 cytidylate kinase; Provisional
Probab=96.89 E-value=0.00092 Score=60.85 Aligned_cols=29 Identities=31% Similarity=0.529 Sum_probs=26.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.|+|.|+||||||++++.+|..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 47899999999999999999999988875
No 365
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.89 E-value=0.00082 Score=60.53 Aligned_cols=26 Identities=31% Similarity=0.514 Sum_probs=20.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
|.|+|+||||||||+++|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 76655
No 366
>TIGR00174 miaA tRNA isopentenyltransferase (miaA). Catalyzes the first step in the modification of an adenosine near the anticodon to 2-methylthio-N6-isopentyladenosine.
Probab=96.87 E-value=0.0039 Score=61.45 Aligned_cols=34 Identities=26% Similarity=0.512 Sum_probs=30.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
|++.||+|+|||+||..+|.+++..+++++.-.+
T Consensus 2 i~i~G~t~~GKs~la~~l~~~~~~~iis~Ds~qv 35 (287)
T TIGR00174 2 IFIMGPTAVGKSQLAIQLAKKLNAEIISVDSMQI 35 (287)
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCcEEEechhhe
Confidence 6899999999999999999999999888876443
No 367
>PTZ00202 tuzin; Provisional
Probab=96.86 E-value=0.0075 Score=62.24 Aligned_cols=62 Identities=13% Similarity=0.093 Sum_probs=47.3
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
-...+++|.+....+|.+.+.-. ....++-+.|.||+|||||+|++.++..++...+.++..
T Consensus 259 a~~~~FVGReaEla~Lr~VL~~~---------d~~~privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 259 AVIRQFVSREAEESWVRQVLRRL---------DTAHPRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CCccCCCCcHHHHHHHHHHHhcc---------CCCCceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 44668999999999998877411 111235678999999999999999999888666666554
No 368
>PLN02165 adenylate isopentenyltransferase
Probab=96.86 E-value=0.0028 Score=63.50 Aligned_cols=35 Identities=20% Similarity=0.400 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
...++|.||+|+|||+||..||..++..++..+.-
T Consensus 43 g~iivIiGPTGSGKStLA~~LA~~l~~eIIsaDs~ 77 (334)
T PLN02165 43 DKVVVIMGATGSGKSRLSVDLATRFPSEIINSDKM 77 (334)
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHcCCceecCChh
Confidence 34689999999999999999999999877765543
No 369
>PTZ00301 uridine kinase; Provisional
Probab=96.83 E-value=0.0072 Score=56.99 Aligned_cols=23 Identities=30% Similarity=0.459 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
-|.+.||||+||||||+.|+.++
T Consensus 5 iIgIaG~SgSGKTTla~~l~~~l 27 (210)
T PTZ00301 5 VIGISGASGSGKSSLSTNIVSEL 27 (210)
T ss_pred EEEEECCCcCCHHHHHHHHHHHH
Confidence 46789999999999999998876
No 370
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.83 E-value=0.0011 Score=59.79 Aligned_cols=29 Identities=34% Similarity=0.641 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
|.|+|++|+|||++|+.+|+.++.+++..
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~~ 31 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLISA 31 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceecH
Confidence 78999999999999999999999887653
No 371
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=96.81 E-value=0.0061 Score=53.60 Aligned_cols=113 Identities=21% Similarity=0.347 Sum_probs=57.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
+-++|.||.|||||+|+++|-.+-. ++ .....+.+.|.+-...+ +--..+++-..|+..-
T Consensus 2 krimliG~~g~GKTTL~q~L~~~~~-~~-----------------~KTq~i~~~~~~IDTPG--EyiE~~~~y~aLi~ta 61 (143)
T PF10662_consen 2 KRIMLIGPSGSGKTTLAQALNGEEI-RY-----------------KKTQAIEYYDNTIDTPG--EYIENPRFYHALIVTA 61 (143)
T ss_pred ceEEEECCCCCCHHHHHHHHcCCCC-Cc-----------------CccceeEecccEEECCh--hheeCHHHHHHHHHHH
Confidence 3589999999999999999976321 00 00111111121111111 1111233444444322
Q ss_pred cCcCCCCCCcEEEEeecCC-CCCCCHHHhccccccc-----ccCCCcHHHHHHHHHHHhccCCC
Q 012000 330 DGVTSNPNDLVIVMGATNK-PQELDDAVLRRLVKRI-----YVPLPDENVRRLLLKHKLKGQAF 387 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~-~~~Ld~al~rRf~~~i-----~~~~P~~~~r~~il~~~l~~~~~ 387 (473)
. .-+.|+++..++. ....+|.+.+-|.+.+ .++++..++..+..+.+|+..|+
T Consensus 62 ~-----dad~V~ll~dat~~~~~~pP~fa~~f~~pvIGVITK~Dl~~~~~~i~~a~~~L~~aG~ 120 (143)
T PF10662_consen 62 Q-----DADVVLLLQDATEPRSVFPPGFASMFNKPVIGVITKIDLPSDDANIERAKKWLKNAGV 120 (143)
T ss_pred h-----hCCEEEEEecCCCCCccCCchhhcccCCCEEEEEECccCccchhhHHHHHHHHHHcCC
Confidence 1 1233444444444 4567888888665432 67888445555555566655554
No 372
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=96.81 E-value=0.0045 Score=62.00 Aligned_cols=35 Identities=31% Similarity=0.424 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+-++++||||||||+||..++.+. +.+++.+++.
T Consensus 55 G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E 92 (321)
T TIGR02012 55 GRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 92 (321)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEccc
Confidence 4568899999999999988876544 5566666543
No 373
>PF14516 AAA_35: AAA-like domain
Probab=96.81 E-value=0.018 Score=58.28 Aligned_cols=161 Identities=16% Similarity=0.120 Sum_probs=87.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh-------hh---------------------hhh--
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK-------WV---------------------GEG-- 293 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~-------~~---------------------g~~-- 293 (473)
.+...+.++||..+|||+|...+.+.+ +...+.++...+... +. .+.
T Consensus 29 ~~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~ 108 (331)
T PF14516_consen 29 QPGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIG 108 (331)
T ss_pred cCCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcC
Confidence 345679999999999999999987655 666676665543110 00 000
Q ss_pred ---------hh------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC----C-CCcEEEEeecCCCCCCC
Q 012000 294 ---------EK------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN----P-NDLVIVMGATNKPQELD 353 (473)
Q Consensus 294 ---------~~------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~----~-~~~v~vI~tTn~~~~Ld 353 (473)
+. ..+-++.|||++...... .+...|+..+...... + -.++.+|++...+..+.
T Consensus 109 ~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~------~~~~dF~~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 109 SKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYP------QIADDFFGLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred ChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCc------chHHHHHHHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 00 002355589987655321 1223333333322211 1 12233333322222222
Q ss_pred HHH-hccc--ccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 354 DAV-LRRL--VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 354 ~al-~rRf--~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
... .+=| ...+.++..+.++...+++.+ +...++..++.|-..|.|. +--+..+|...+.
T Consensus 183 ~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~----~~~~~~~~~~~l~~~tgGh-P~Lv~~~~~~l~~ 245 (331)
T PF14516_consen 183 LDINQSPFNIGQPIELPDFTPEEVQELAQRY----GLEFSQEQLEQLMDWTGGH-PYLVQKACYLLVE 245 (331)
T ss_pred cCCCCCCcccccceeCCCCCHHHHHHHHHhh----hccCCHHHHHHHHHHHCCC-HHHHHHHHHHHHH
Confidence 111 1123 345777878888888877765 4456677799999999995 5555555555433
No 374
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=96.80 E-value=0.0013 Score=58.42 Aligned_cols=32 Identities=22% Similarity=0.449 Sum_probs=26.4
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
++|+|+||+|||++|+.++..+ +...+.++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~d 36 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDGD 36 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCH
Confidence 7899999999999999999988 5556655543
No 375
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.78 E-value=0.0013 Score=59.93 Aligned_cols=28 Identities=29% Similarity=0.364 Sum_probs=24.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.++.-|+|.|+||+||||+++.++..+.
T Consensus 5 ~~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 5 PNGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3456799999999999999999999885
No 376
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.78 E-value=0.0016 Score=56.66 Aligned_cols=29 Identities=28% Similarity=0.272 Sum_probs=25.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
+..-++|.|+.|+|||++++.+++.++..
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 34578999999999999999999999865
No 377
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=96.74 E-value=0.012 Score=59.25 Aligned_cols=61 Identities=15% Similarity=0.139 Sum_probs=46.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
..+.+.+.++..|...+-. .-..-|..+.|||-.|||||.+++.+-+.++.+.+.+++-+.
T Consensus 6 ~~v~~Re~qi~~L~~Llg~---------~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ec 66 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLLGN---------NSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVEC 66 (438)
T ss_pred cCccchHHHHHHHHHHhCC---------CCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHh
Confidence 3566778888888876621 011235678999999999999999999999998888876543
No 378
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.71 E-value=0.0025 Score=58.86 Aligned_cols=29 Identities=24% Similarity=0.346 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
|.|+|++|||||++++.++...+.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~~ 30 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVIDA 30 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEeC
Confidence 67999999999999999999876776644
No 379
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=96.71 E-value=0.041 Score=52.52 Aligned_cols=138 Identities=13% Similarity=0.028 Sum_probs=91.8
Q ss_pred CCceEEEEcCCC-CcHHHHHHHHHHHcCC---------cEEEEecCccc---hh--hhhhhhh-----------hhccee
Q 012000 248 PARGLLLFGPPG-NGKTMLAKAVASESQA---------TFFNVSASSLT---SK--WVGEGEK-----------LVRTLF 301 (473)
Q Consensus 248 ~~~~iLL~GPpG-tGKT~La~aiA~e~~~---------~~~~v~~~~l~---~~--~~g~~~~-----------~~~~if 301 (473)
-.+.+||.|..+ +||..++..++..+.. .+..+.+..-. .+ .+.+.+. .-..|+
T Consensus 14 LshAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KVi 93 (263)
T PRK06581 14 LYNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVA 93 (263)
T ss_pred chheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEE
Confidence 356899999998 9999999888876632 23333221100 00 0111111 113466
Q ss_pred eeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHH
Q 012000 302 MIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHK 381 (473)
Q Consensus 302 ~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~ 381 (473)
.|++. +.......+.||+.++ .++.++++|..|..+..+.+.+++||.. +.++.|+...-.+++...
T Consensus 94 II~~a--------e~mt~~AANALLKtLE----EPP~~t~fILit~~~~~LLpTIrSRCq~-i~~~~p~~~~~~e~~~~~ 160 (263)
T PRK06581 94 IIYSA--------ELMNLNAANSCLKILE----DAPKNSYIFLITSRAASIISTIRSRCFK-INVRSSILHAYNELYSQF 160 (263)
T ss_pred EEech--------HHhCHHHHHHHHHhhc----CCCCCeEEEEEeCChhhCchhHhhceEE-EeCCCCCHHHHHHHHHHh
Confidence 67777 3334556788898887 5667788888899999999999999966 899999998888888877
Q ss_pred hccCCCCCChhhHHHHHHHc
Q 012000 382 LKGQAFSLPGGDLERLVRET 401 (473)
Q Consensus 382 l~~~~~~l~~~~l~~La~~t 401 (473)
+.... .+..++.|.+.+
T Consensus 161 ~~p~~---~~~~l~~i~~~~ 177 (263)
T PRK06581 161 IQPIA---DNKTLDFINRFT 177 (263)
T ss_pred ccccc---ccHHHHHHHHHh
Confidence 65432 344466666553
No 380
>PRK14529 adenylate kinase; Provisional
Probab=96.70 E-value=0.0013 Score=62.56 Aligned_cols=29 Identities=28% Similarity=0.549 Sum_probs=25.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.|+|.||||+||||+++.||..++.+.+.
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~is 30 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHIE 30 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCcc
Confidence 38999999999999999999999877653
No 381
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=96.70 E-value=0.0032 Score=63.18 Aligned_cols=53 Identities=32% Similarity=0.505 Sum_probs=41.1
Q ss_pred cc-cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 215 WE-DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 215 ~~-divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
|+ ++.|+++++.+|-+.+... ..++....+-++|.||+|+|||+|++.+.+-+
T Consensus 59 f~~~~~G~~~~i~~lV~~fk~A------A~g~~~~krIl~L~GPvg~GKSsl~~~Lk~~l 112 (358)
T PF08298_consen 59 FEDEFYGMEETIERLVNYFKSA------AQGLEERKRILLLLGPVGGGKSSLAELLKRGL 112 (358)
T ss_pred ccccccCcHHHHHHHHHHHHHH------HhccCccceEEEEECCCCCCHHHHHHHHHHHh
Confidence 44 8999999999998877432 22333344678899999999999999998765
No 382
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=96.69 E-value=0.0016 Score=60.79 Aligned_cols=104 Identities=23% Similarity=0.247 Sum_probs=54.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhh-cceeeeeccccccccCcchHHHHHHHHHH
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLV-RTLFMIDSIMSTRMANENDASRRLKSEFL 326 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~-~~if~IDei~~~~~~~~~~~~~~~~~~ll 326 (473)
....++|.|+.|+|||++.+.|+.+. +.-+......+ ....... .-++.+||+...... + ...+++-+-
T Consensus 51 ~d~~lvl~G~QG~GKStf~~~L~~~~----~~d~~~~~~~k--d~~~~l~~~~iveldEl~~~~k~-~---~~~lK~~iT 120 (198)
T PF05272_consen 51 NDTVLVLVGKQGIGKSTFFRKLGPEY----FSDSINDFDDK--DFLEQLQGKWIVELDELDGLSKK-D---VEALKSFIT 120 (198)
T ss_pred CceeeeEecCCcccHHHHHHHHhHHh----ccCccccCCCc--HHHHHHHHhHheeHHHHhhcchh-h---HHHHHHHhc
Confidence 34568899999999999999997662 21111111111 0011111 235568998654411 1 122222222
Q ss_pred HHhcCcC-------CCCCCcEEEEeecCCCCCC-CHHHhcccc
Q 012000 327 IQFDGVT-------SNPNDLVIVMGATNKPQEL-DDAVLRRLV 361 (473)
Q Consensus 327 ~~ldg~~-------~~~~~~v~vI~tTn~~~~L-d~al~rRf~ 361 (473)
...+.+. ...+.+.++|||||..+-| |+.--|||-
T Consensus 121 ~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf~ 163 (198)
T PF05272_consen 121 RRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRFW 163 (198)
T ss_pred ccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEEE
Confidence 2222111 1123457889999998765 445556775
No 383
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=96.69 E-value=0.0016 Score=63.12 Aligned_cols=31 Identities=26% Similarity=0.486 Sum_probs=25.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
|+|+|+||+||||+|+.++..+ +..++.++.
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~ 35 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGT 35 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEcc
Confidence 7899999999999999999987 455565554
No 384
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=96.69 E-value=0.0025 Score=58.40 Aligned_cols=33 Identities=30% Similarity=0.339 Sum_probs=25.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
+|++||||||||+|+..++.+. |.+++.++..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~ 37 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE 37 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC
Confidence 7899999999999999887653 56666666543
No 385
>PLN02199 shikimate kinase
Probab=96.69 E-value=0.0018 Score=63.58 Aligned_cols=33 Identities=33% Similarity=0.532 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.+.|+|.|.+|||||++++.+|+.++.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 468999999999999999999999999998654
No 386
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.69 E-value=0.002 Score=60.21 Aligned_cols=36 Identities=22% Similarity=0.271 Sum_probs=28.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
+.-+++.|+||+|||++|+.+|.+++..+ +..++++
T Consensus 3 ~~~i~i~G~~G~GKst~a~~l~~~~~~~~--~~~~D~~ 38 (197)
T PRK12339 3 STIHFIGGIPGVGKTSISGYIARHRAIDI--VLSGDYL 38 (197)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCeE--EehhHHH
Confidence 34689999999999999999999998755 3444443
No 387
>PLN02459 probable adenylate kinase
Probab=96.68 E-value=0.0019 Score=62.69 Aligned_cols=35 Identities=20% Similarity=0.340 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
.++|.||||+||||+++.+|..++...+ +..+++.
T Consensus 31 ~ii~~G~PGsGK~T~a~~la~~~~~~~i--s~gdllR 65 (261)
T PLN02459 31 NWVFLGCPGVGKGTYASRLSKLLGVPHI--ATGDLVR 65 (261)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEE--eCcHHHH
Confidence 4888999999999999999999986655 4455543
No 388
>PF03029 ATP_bind_1: Conserved hypothetical ATP binding protein; InterPro: IPR004130 Members of this family are found in a range of archaea and eukaryotes and have hypothesised ATP binding activity.; GO: 0000166 nucleotide binding; PDB: 1YR7_A 1YRA_B 1YR8_A 1YR6_A 1YR9_A 1YRB_A 2OXR_A.
Probab=96.68 E-value=0.0011 Score=63.90 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=29.7
Q ss_pred EEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhhhhhhhcceeeeecccccc
Q 012000 254 LFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTR 310 (473)
Q Consensus 254 L~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~ 310 (473)
+.||||+||||+++++.+.+ +.+.+.|+..--.........-.++.++.+++++...
T Consensus 1 ViGpaGSGKTT~~~~~~~~~~~~~~~~~~vNLDPa~~~~~y~~~iDird~i~~~evm~~~ 60 (238)
T PF03029_consen 1 VIGPAGSGKTTFCKGLSEWLESNGRDVYIVNLDPAVENLPYPPDIDIRDLISVEEVMEEY 60 (238)
T ss_dssp -EESTTSSHHHHHHHHHHHHTTT-S-EEEEE--TT-S--SS--SEEGGGT--HHHHHTT-
T ss_pred CCCCCCCCHHHHHHHHHHHHHhccCCceEEEcchHhcccccCchHHHHhhhhhhhhhhhc
Confidence 47999999999999999876 3444444432222222223334456666666665543
No 389
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.67 E-value=0.0016 Score=60.19 Aligned_cols=29 Identities=31% Similarity=0.582 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
..++|.||+|+|||||++.|+...+..++
T Consensus 3 ~~i~l~G~sGsGKsTl~~~l~~~~~~~~~ 31 (186)
T PRK10078 3 KLIWLMGPSGSGKDSLLAALRQREQTQLL 31 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHhccCCCeEE
Confidence 35889999999999999999998776543
No 390
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.66 E-value=0.02 Score=59.28 Aligned_cols=25 Identities=28% Similarity=0.522 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.-++|.||+|+||||++..+|..+
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~~ 247 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAKY 247 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3568899999999999999998754
No 391
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=96.65 E-value=0.015 Score=60.78 Aligned_cols=36 Identities=22% Similarity=0.309 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~~~ 284 (473)
...++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 4578999999999999988887654 34555555544
No 392
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=96.64 E-value=0.0087 Score=59.12 Aligned_cols=36 Identities=22% Similarity=0.303 Sum_probs=27.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc----C-CcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES----Q-ATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~----~-~~~~~v~~~~ 284 (473)
+..++|.||+|+||||++..+|..+ + ..+..++...
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 4678899999999999999998765 3 4555555443
No 393
>PRK11823 DNA repair protein RadA; Provisional
Probab=96.64 E-value=0.0061 Score=64.15 Aligned_cols=38 Identities=32% Similarity=0.409 Sum_probs=29.9
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.+..-+||+||||+|||+|+..+|... +.+++.++..+
T Consensus 78 ~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee 118 (446)
T PRK11823 78 VPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE 118 (446)
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc
Confidence 445568999999999999999998765 56777777554
No 394
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=96.63 E-value=0.0017 Score=58.97 Aligned_cols=23 Identities=48% Similarity=0.751 Sum_probs=20.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+++|+|+||+||||+++.+++.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999999887
No 395
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=96.61 E-value=0.0083 Score=62.74 Aligned_cols=38 Identities=26% Similarity=0.251 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.+|..++|+|++|+||||++..+|..+ +..+..+++..
T Consensus 93 ~~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~ 133 (437)
T PRK00771 93 LKPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADT 133 (437)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCC
Confidence 346789999999999999999998866 45555555443
No 396
>PRK00889 adenylylsulfate kinase; Provisional
Probab=96.60 E-value=0.0032 Score=57.39 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+.-+.|.|+||+|||++++.++..+ +..+..++..
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l~~~g~~v~~id~D 41 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKLREAGYPVEVLDGD 41 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEcCc
Confidence 4568899999999999999999987 3345555543
No 397
>PRK13808 adenylate kinase; Provisional
Probab=96.59 E-value=0.0019 Score=64.85 Aligned_cols=35 Identities=26% Similarity=0.505 Sum_probs=28.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
.|+|+||||+|||++++.||..++...+. ..+++.
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is--~gdlLR 36 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLS--TGDMLR 36 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceec--ccHHHH
Confidence 38999999999999999999999875554 455543
No 398
>PRK12338 hypothetical protein; Provisional
Probab=96.59 E-value=0.0024 Score=63.64 Aligned_cols=30 Identities=20% Similarity=0.270 Sum_probs=26.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
|.-|++.|+|||||||+|+++|..++...+
T Consensus 4 p~ii~i~G~sGsGKST~a~~la~~l~~~~~ 33 (319)
T PRK12338 4 PYVILIGSASGIGKSTIASELARTLNIKHL 33 (319)
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHCCCeEE
Confidence 467899999999999999999999987653
No 399
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=96.57 E-value=0.0084 Score=58.88 Aligned_cols=38 Identities=18% Similarity=0.266 Sum_probs=28.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.+++-++|.||+|+||||++..+|..+ +..+..+++..
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D~ 110 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGDT 110 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCCC
Confidence 345778899999999999999998766 55555555443
No 400
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=96.57 E-value=0.013 Score=59.19 Aligned_cols=27 Identities=41% Similarity=0.692 Sum_probs=23.0
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHH
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..+|+|++|||.-|||||+|--..-..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 456899999999999999998877643
No 401
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=96.52 E-value=0.0062 Score=56.61 Aligned_cols=110 Identities=15% Similarity=0.172 Sum_probs=51.4
Q ss_pred EEEEcCCCCcHHHHHHHH-HHHc---CCcEEEEecCccc----hh---------------------hhhhhhhh---hcc
Q 012000 252 LLLFGPPGNGKTMLAKAV-ASES---QATFFNVSASSLT----SK---------------------WVGEGEKL---VRT 299 (473)
Q Consensus 252 iLL~GPpGtGKT~La~ai-A~e~---~~~~~~v~~~~l~----~~---------------------~~g~~~~~---~~~ 299 (473)
.+++|.||+|||+.|-.. .... |.+++. +...+. .. +....... ...
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRKLPKGS 81 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTTSGTT-
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcccCCCc
Confidence 578999999999987555 4332 455443 322110 00 00001111 356
Q ss_pred eeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccC
Q 012000 300 LFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVP 367 (473)
Q Consensus 300 if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~ 367 (473)
++.|||.....+...... ......+..+... ...++-||.+|..+..+|+.+++.....+.+.
T Consensus 82 liviDEa~~~~~~r~~~~--~~~~~~~~~l~~h---Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~ 144 (193)
T PF05707_consen 82 LIVIDEAQNFFPSRSWKG--KKVPEIIEFLAQH---RHYGWDIILITQSPSQIDKFIRDLVEYHYHCR 144 (193)
T ss_dssp EEEETTGGGTSB---T-T------HHHHGGGGC---CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEE
T ss_pred EEEEECChhhcCCCcccc--ccchHHHHHHHHh---CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEE
Confidence 888999976554433210 0112222333222 23346788899999999999998766555443
No 402
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.51 E-value=0.0025 Score=59.52 Aligned_cols=41 Identities=22% Similarity=0.410 Sum_probs=31.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEEecCccch
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTS 287 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~~~~l~~ 287 (473)
..|..+++.|+||+|||+++..+..++ +..++.+++.++..
T Consensus 13 ~~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 13 EKPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp SS-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred cCCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 346789999999999999999999988 77788888777643
No 403
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=96.49 E-value=0.0078 Score=59.60 Aligned_cols=37 Identities=24% Similarity=0.421 Sum_probs=33.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
++-++|+||.++|||-||-.+|++++..+++++.-.+
T Consensus 3 ~~~i~I~GPTAsGKT~lai~LAk~~~~eIIs~DSmQv 39 (308)
T COG0324 3 PKLIVIAGPTASGKTALAIALAKRLGGEIISLDSMQV 39 (308)
T ss_pred ccEEEEECCCCcCHHHHHHHHHHHcCCcEEecchhhh
Confidence 4579999999999999999999999999999886543
No 404
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.49 E-value=0.0091 Score=60.83 Aligned_cols=89 Identities=18% Similarity=0.127 Sum_probs=53.9
Q ss_pred CCcChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 012000 192 NGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 192 ~~~~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
.+++..+...+-..+....+...+ .+.+++...+.+.+..-+..+..+. ..+++-++|.||+|+||||++..+|.
T Consensus 154 ~gV~~~~~~~l~~~~~~~~~~~~~---~~~~~v~~~~~~~L~~~l~~~~~~~--~~~~~ii~lvGptGvGKTTt~akLA~ 228 (407)
T PRK12726 154 RGISDTYVADFMQAGRKQFKQVET---AHLDDITDWFVPYLSGKLAVEDSFD--LSNHRIISLIGQTGVGKTTTLVKLGW 228 (407)
T ss_pred cCCCHHHHHHHHHHHHHhcccccc---ccHHHHHHHHHHHhcCcEeeCCCce--ecCCeEEEEECCCCCCHHHHHHHHHH
Confidence 344555555444444444343332 2356777788777765444433332 23456789999999999999999987
Q ss_pred Hc---CCcEEEEecCcc
Q 012000 272 ES---QATFFNVSASSL 285 (473)
Q Consensus 272 e~---~~~~~~v~~~~l 285 (473)
.+ +..+..+++...
T Consensus 229 ~l~~~g~~V~lItaDty 245 (407)
T PRK12726 229 QLLKQNRTVGFITTDTF 245 (407)
T ss_pred HHHHcCCeEEEEeCCcc
Confidence 65 444555554433
No 405
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=96.48 E-value=0.0044 Score=60.11 Aligned_cols=38 Identities=32% Similarity=0.600 Sum_probs=32.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH------HcCCcEEEEecCccch
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS------ESQATFFNVSASSLTS 287 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~------e~~~~~~~v~~~~l~~ 287 (473)
..+||.||.|.||++||+.|-. .+..+|++|+|..+..
T Consensus 209 ~p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrg 252 (531)
T COG4650 209 APILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRG 252 (531)
T ss_pred CCeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecC
Confidence 4599999999999999999853 4678999999988744
No 406
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=96.47 E-value=0.026 Score=53.04 Aligned_cols=26 Identities=27% Similarity=0.362 Sum_probs=23.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
-|.+.|++|+||||+|+.|+..++..
T Consensus 10 iIgIaG~SgSGKTTva~~l~~~~~~~ 35 (218)
T COG0572 10 IIGIAGGSGSGKTTVAKELSEQLGVE 35 (218)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcC
Confidence 46688999999999999999999866
No 407
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=96.46 E-value=0.011 Score=59.21 Aligned_cols=35 Identities=31% Similarity=0.447 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+-+++|||||||||+||..++.+. +...+.++..
T Consensus 55 G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E 92 (325)
T cd00983 55 GRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAE 92 (325)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECcc
Confidence 3457899999999999999887543 5666766653
No 408
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=96.46 E-value=0.003 Score=57.93 Aligned_cols=29 Identities=24% Similarity=0.331 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
|.|+|+||+||||+++.+++ +|.+++..+
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~D 30 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDAD 30 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEecC
Confidence 68999999999999999998 787776543
No 409
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.46 E-value=0.031 Score=57.56 Aligned_cols=49 Identities=18% Similarity=0.369 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHH--HHHHHHcCCcEEEEecCcc
Q 012000 223 KAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLA--KAVASESQATFFNVSASSL 285 (473)
Q Consensus 223 ~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La--~aiA~e~~~~~~~v~~~~l 285 (473)
+..++|+.++. ..+..-|++.||.||||+.|+ +++...-+ ++.++|..+
T Consensus 3 e~~~~L~~wL~------------e~~~TFIvV~GPrGSGK~elV~d~~L~~r~~--vL~IDC~~i 53 (431)
T PF10443_consen 3 EAIEQLKSWLN------------ENPNTFIVVQGPRGSGKRELVMDHVLKDRKN--VLVIDCDQI 53 (431)
T ss_pred hHHHHHHHHHh------------cCCCeEEEEECCCCCCccHHHHHHHHhCCCC--EEEEEChHh
Confidence 34567777764 223456889999999999999 66655433 666666654
No 410
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=96.44 E-value=0.0025 Score=58.26 Aligned_cols=25 Identities=24% Similarity=0.410 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
-++|.||||+|||+++++|+..++.
T Consensus 3 ~~~i~G~sGsGKttl~~~l~~~~~~ 27 (179)
T TIGR02322 3 LIYVVGPSGAGKDTLLDYARARLAG 27 (179)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCc
Confidence 4789999999999999999998753
No 411
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=96.42 E-value=0.0034 Score=56.11 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=30.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
..|.|+|.||+||||||+++...+ +.+.+.+++..+.
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~lR 42 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNLR 42 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHHC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcchh
Confidence 458899999999999999999876 6778877766554
No 412
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=96.39 E-value=0.0034 Score=55.34 Aligned_cols=30 Identities=27% Similarity=0.533 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
..+++.|+.||||||++++++.+++.+|+.
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~~~F~d 42 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELGLKFID 42 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhCCcccc
Confidence 368899999999999999999999999884
No 413
>PRK13975 thymidylate kinase; Provisional
Probab=96.38 E-value=0.0038 Score=57.83 Aligned_cols=28 Identities=32% Similarity=0.400 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
.-|.|.|++|+||||+++.+++.++..+
T Consensus 3 ~~I~ieG~~GsGKtT~~~~L~~~l~~~~ 30 (196)
T PRK13975 3 KFIVFEGIDGSGKTTQAKLLAEKLNAFW 30 (196)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCe
Confidence 3588999999999999999999998644
No 414
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.38 E-value=0.17 Score=52.56 Aligned_cols=124 Identities=18% Similarity=0.189 Sum_probs=70.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhh------hhhh---hcceeeeeccccccccCcchHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGE------GEKL---VRTLFMIDSIMSTRMANENDASRRL 321 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~------~~~~---~~~if~IDei~~~~~~~~~~~~~~~ 321 (473)
-++|+||.+|||||+++.+.....-.++.++..+........ -... -+..+++||+..... ..+.
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~~~~~~~~~yifLDEIq~v~~------W~~~ 112 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYIELKEREKSYIFLDEIQNVPD------WERA 112 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHHHhhccCCceEEEecccCchh------HHHH
Confidence 789999999999999998888875555555544443322111 1111 224778999954331 1222
Q ss_pred HHHHHHHhcCcCCCCCCcEEEEeecCC--CCCCCHHHhcccccccccCCCcHHHHHH-------------HHHHHhccCC
Q 012000 322 KSEFLIQFDGVTSNPNDLVIVMGATNK--PQELDDAVLRRLVKRIYVPLPDENVRRL-------------LLKHKLKGQA 386 (473)
Q Consensus 322 ~~~ll~~ldg~~~~~~~~v~vI~tTn~--~~~Ld~al~rRf~~~i~~~~P~~~~r~~-------------il~~~l~~~~ 386 (473)
+..+. | .....+++.+++.. ...+.+.+..|.. .+.+.+.+..+... .+..++...|
T Consensus 113 lk~l~---d----~~~~~v~itgsss~ll~~~~~~~L~GR~~-~~~l~PlSF~Efl~~~~~~~~~~~~~~~f~~Yl~~GG 184 (398)
T COG1373 113 LKYLY---D----RGNLDVLITGSSSSLLSKEISESLAGRGK-DLELYPLSFREFLKLKGEEIEPSKLELLFEKYLETGG 184 (398)
T ss_pred HHHHH---c----cccceEEEECCchhhhccchhhhcCCCce-eEEECCCCHHHHHhhcccccchhHHHHHHHHHHHhCC
Confidence 23332 2 11113455444422 2234556666854 46666677777754 5777777666
Q ss_pred CC
Q 012000 387 FS 388 (473)
Q Consensus 387 ~~ 388 (473)
++
T Consensus 185 fP 186 (398)
T COG1373 185 FP 186 (398)
T ss_pred Cc
Confidence 54
No 415
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=96.38 E-value=0.0041 Score=56.97 Aligned_cols=34 Identities=26% Similarity=0.577 Sum_probs=27.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
..++|.||+|+||||++++++..++..+ ++...+
T Consensus 4 e~i~l~G~sGsGKSTl~~~la~~l~~~~--i~gd~~ 37 (176)
T PRK09825 4 ESYILMGVSGSGKSLIGSKIAALFSAKF--IDGDDL 37 (176)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCEE--ECCccc
Confidence 4588999999999999999999987643 344443
No 416
>PRK14974 cell division protein FtsY; Provisional
Probab=96.37 E-value=0.014 Score=59.06 Aligned_cols=36 Identities=17% Similarity=0.152 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+.-++|.||||+||||++..+|..+ +..+..+.+.
T Consensus 139 ~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~D 177 (336)
T PRK14974 139 KPVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGD 177 (336)
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCC
Confidence 35679999999999999888888765 4455445443
No 417
>PRK08356 hypothetical protein; Provisional
Probab=96.37 E-value=0.0041 Score=57.84 Aligned_cols=32 Identities=31% Similarity=0.201 Sum_probs=24.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.-|+|+||||+||||+|+.++ +.+.+. ++..+
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~-~~g~~~--is~~~ 37 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFE-EKGFCR--VSCSD 37 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcE--EeCCC
Confidence 458899999999999999996 567664 44444
No 418
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=96.37 E-value=0.018 Score=64.29 Aligned_cols=24 Identities=33% Similarity=0.646 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+-++|.|+||||||++++++...+
T Consensus 339 ~~~iitGgpGTGKTt~l~~i~~~~ 362 (720)
T TIGR01448 339 KVVILTGGPGTGKTTITRAIIELA 362 (720)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999999986654
No 419
>PRK14737 gmk guanylate kinase; Provisional
Probab=96.36 E-value=0.0032 Score=58.23 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
++-|+|.||+|+|||+|++.+..+..
T Consensus 4 ~~~ivl~GpsG~GK~tl~~~l~~~~~ 29 (186)
T PRK14737 4 PKLFIISSVAGGGKSTIIQALLEEHP 29 (186)
T ss_pred CeEEEEECCCCCCHHHHHHHHHhcCC
Confidence 56799999999999999999988763
No 420
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.36 E-value=0.17 Score=58.08 Aligned_cols=32 Identities=31% Similarity=0.288 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.+-++++||+|.|||+++..++...+ ++..++
T Consensus 32 ~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~ 63 (903)
T PRK04841 32 YRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYS 63 (903)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEe
Confidence 35699999999999999999987766 554444
No 421
>TIGR01613 primase_Cterm phage/plasmid primase, P4 family, C-terminal domain. This model represents a clade within a larger family of proteins from viruses of bacteria and animals. Members of this family are found in phage and plasmids of bacteria and archaea only. The model describes a domain of about 300 residues, found generally toward the protein C-terminus.
Probab=96.34 E-value=0.0093 Score=59.58 Aligned_cols=52 Identities=13% Similarity=0.149 Sum_probs=39.2
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.++.++.|.+++-+.+... ....+.++|+|+.|+|||++.+.|..-+|-...
T Consensus 54 d~~~~~~l~~~lg~~L~~~------~~~~~~~~l~G~g~nGKStl~~~l~~l~G~~~~ 105 (304)
T TIGR01613 54 DNELIEYLQRVIGYSLTGN------YTEQKLFFLYGNGGNGKSTFQNLLSNLLGDYAT 105 (304)
T ss_pred CHHHHHHHHHHHhHHhcCC------CCceEEEEEECCCCCcHHHHHHHHHHHhChhhc
Confidence 5567888888876654432 223467999999999999999999988876553
No 422
>PRK00300 gmk guanylate kinase; Provisional
Probab=96.34 E-value=0.0041 Score=58.11 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=24.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+..-++|.||+|+|||+|++.++..+.
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 456799999999999999999999876
No 423
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=96.31 E-value=0.016 Score=56.13 Aligned_cols=27 Identities=30% Similarity=0.484 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
..-++|+||+|||||+|++.+++....
T Consensus 16 Gqr~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 16 GQRGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcccc
Confidence 346999999999999999999998754
No 424
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=96.30 E-value=0.0059 Score=55.15 Aligned_cols=40 Identities=15% Similarity=0.304 Sum_probs=33.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
..+..|.|+|.+|+||||+|.++...+ |.+.+.+++..+.
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnvR 63 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNVR 63 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhHh
Confidence 345678899999999999999999876 7888888876653
No 425
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=96.27 E-value=0.0033 Score=58.44 Aligned_cols=23 Identities=43% Similarity=0.609 Sum_probs=21.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
|-+.||+|+||||+|+.|+..++
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~ 24 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILN 24 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56899999999999999999986
No 426
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.27 E-value=0.0082 Score=57.69 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=30.4
Q ss_pred cCCCCCceEEEEcCCCCcHHHHHHHHHHH---cCCcEEEEecCc
Q 012000 244 GLRRPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS 284 (473)
Q Consensus 244 ~~~~~~~~iLL~GPpGtGKT~La~aiA~e---~~~~~~~v~~~~ 284 (473)
++..+...+|++||||||||+++..++.+ .|-+.+.++..+
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee 59 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE 59 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC
Confidence 34455677999999999999999876554 366777776544
No 427
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=96.26 E-value=0.003 Score=57.71 Aligned_cols=25 Identities=36% Similarity=0.587 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
-++|.||+|+|||+|++.|+.....
T Consensus 3 ii~l~G~~GsGKsTl~~~L~~~~~~ 27 (180)
T TIGR03263 3 LIVISGPSGVGKSTLVKALLEEDPN 27 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHccCcc
Confidence 4889999999999999999997654
No 428
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=96.26 E-value=0.005 Score=56.57 Aligned_cols=34 Identities=26% Similarity=0.404 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCcc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l 285 (473)
|.+.|+||||||+||+.++..++ .+...++..++
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~~~~~~~~i~~Ddf 38 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRVNGIGPVVISLDDY 38 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEehhhc
Confidence 67999999999999999999873 44555554444
No 429
>PRK06761 hypothetical protein; Provisional
Probab=96.26 E-value=0.0045 Score=60.85 Aligned_cols=32 Identities=25% Similarity=0.319 Sum_probs=26.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+-++|.||||+||||+++.++..+....+.+.
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~~g~~v~ 35 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQNGIEVE 35 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCcCceEEE
Confidence 45899999999999999999999876555444
No 430
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=96.26 E-value=0.014 Score=61.50 Aligned_cols=154 Identities=18% Similarity=0.195 Sum_probs=84.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEE---------EEecCcc
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFF---------NVSASSL 285 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~---------~v~~~~l 285 (473)
.|.|.+.+|++|.-++.-- .......+ .+-.-+|||.|-|.+.||-|.|.+.+-....+- -+.+.-.
T Consensus 302 SI~GH~~vKkAillLLlGG--vEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGSSGVGLTAAVT 379 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGG--VEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGSSGVGLTAAVT 379 (818)
T ss_pred ccccHHHHHHHHHHHHhcc--ceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCCCCccceeEEe
Confidence 4789999999987655311 11111111 111246999999999999999999875532211 1111111
Q ss_pred chhhhhhhh-------hhhcceeeeeccccccccCcchHHHHHHHHHHH-HhcCcCCCCCCcEEEEeecCCCC-------
Q 012000 286 TSKWVGEGE-------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLI-QFDGVTSNPNDLVIVMGATNKPQ------- 350 (473)
Q Consensus 286 ~~~~~g~~~-------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~-~ldg~~~~~~~~v~vI~tTn~~~------- 350 (473)
..+--|+-. -.-+.++.|||++.+........+..+..+-.. .-.|+...-+.+.-||+++|+.+
T Consensus 380 tD~eTGERRLEAGAMVLADRGVVCIDEFDKMsDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAANPvyG~Yd~~k 459 (818)
T KOG0479|consen 380 TDQETGERRLEAGAMVLADRGVVCIDEFDKMSDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAANPVYGQYDQSK 459 (818)
T ss_pred eccccchhhhhcCceEEccCceEEehhcccccchhHHHHHHHHhcceEEeEeccchhhhccceeeeeecCccccccCCCC
Confidence 111112111 112567789999776543222222222211111 11344444456788999999876
Q ss_pred ------CCCHHHhccccccc-ccCCCcHH
Q 012000 351 ------ELDDAVLRRLVKRI-YVPLPDEN 372 (473)
Q Consensus 351 ------~Ld~al~rRf~~~i-~~~~P~~~ 372 (473)
.|+..+++||+..+ .++--+.+
T Consensus 460 ~P~eNIgLpDSLLSRFDLlFv~lD~~d~~ 488 (818)
T KOG0479|consen 460 TPMENIGLPDSLLSRFDLLFVVLDDIDAD 488 (818)
T ss_pred ChhhccCCcHHHHhhhcEEEEEeccccch
Confidence 46789999999643 33333333
No 431
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.25 E-value=0.0077 Score=57.22 Aligned_cols=37 Identities=24% Similarity=0.464 Sum_probs=29.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-++|+||||+|||+++..+|.+. +..++.++..
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 334568999999999999999998754 5667777665
No 432
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=96.25 E-value=0.0044 Score=57.77 Aligned_cols=29 Identities=17% Similarity=0.281 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
-|.|+|++|+|||++++.++..+|.+++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 47899999999999999999988888874
No 433
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=96.25 E-value=0.013 Score=60.22 Aligned_cols=37 Identities=32% Similarity=0.427 Sum_probs=28.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-++|+||||+|||+|+..+|... +.+++.++..
T Consensus 80 ~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~E 119 (372)
T cd01121 80 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGE 119 (372)
T ss_pred cCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 445668999999999999999998764 3466666654
No 434
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=96.25 E-value=0.013 Score=58.77 Aligned_cols=62 Identities=18% Similarity=0.135 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHhchhcc-hhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 222 EKAKQALMEMVILPAKR-RDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 222 ~~~k~~L~e~v~~p~~~-~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+.+++.|.+.+...+.. ...+.....++.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 86 ~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D 151 (318)
T PRK10416 86 EELKELLKEELAEILEPVEKPLNIEEKKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGD 151 (318)
T ss_pred HHHHHHHHHHHHHHhCcCCccccccCCCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 44555565555433321 11111112345678899999999999999998876 4455555443
No 435
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.24 E-value=0.0081 Score=56.74 Aligned_cols=37 Identities=27% Similarity=0.453 Sum_probs=28.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-++++||||||||+++..+|.+. +.+++.++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 334558899999999999999998765 4566666553
No 436
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=96.23 E-value=0.021 Score=64.01 Aligned_cols=33 Identities=18% Similarity=0.236 Sum_probs=25.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
+-++|.|+||||||++++++...+ +..++.+.+
T Consensus 369 ~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~Ap 404 (744)
T TIGR02768 369 DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAAL 404 (744)
T ss_pred CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeC
Confidence 457899999999999999986543 556665543
No 437
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=96.23 E-value=0.0058 Score=56.84 Aligned_cols=33 Identities=24% Similarity=0.361 Sum_probs=24.9
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC-CcEEEEecCc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQ-ATFFNVSASS 284 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~-~~~~~v~~~~ 284 (473)
|.|.||+|||||||+++|+..++ .....++..+
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l~~~~~~v~~~D~ 35 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQLGNPKVVIISQDS 35 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCCCeEEEEecc
Confidence 67899999999999999999873 2344444433
No 438
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=96.23 E-value=0.0044 Score=54.27 Aligned_cols=25 Identities=36% Similarity=0.590 Sum_probs=22.2
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
++|.||+|+|||+|++.+++.+...
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~~~~ 26 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEFDPN 26 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcCCcc
Confidence 6789999999999999999987544
No 439
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=96.22 E-value=0.0046 Score=60.54 Aligned_cols=54 Identities=24% Similarity=0.373 Sum_probs=38.1
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...++++++-.....+.+.+++..... ....+++.||+|+||||+++++..++.
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~----------~~~~ili~G~tGSGKTT~l~all~~i~ 152 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVR----------GRGNILISGPTGSGKTTLLNALLEEIP 152 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHH----------TTEEEEEEESTTSSHHHHHHHHHHHCH
T ss_pred ccccHhhccCchhhHHHHHHHHhhccc----------cceEEEEECCCccccchHHHHHhhhcc
Confidence 346788887666666666665542211 135799999999999999999998874
No 440
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=96.21 E-value=0.0049 Score=56.15 Aligned_cols=33 Identities=21% Similarity=0.359 Sum_probs=28.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
-+|+.||||+|||++|..++..++.+++.+...
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~ 35 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATA 35 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCC
Confidence 489999999999999999999988776666543
No 441
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=96.19 E-value=0.11 Score=50.85 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=40.6
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
+++-.+++.+.|.+.... +..|..+.||.|.+|+||+++++..|.-.+..++.+...
T Consensus 9 ~lVlf~~ai~hi~ri~Rv----------L~~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~ 65 (268)
T PF12780_consen 9 NLVLFDEAIEHIARISRV----------LSQPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEIT 65 (268)
T ss_dssp -----HHHHHHHHHHHHH----------HCSTTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTS
T ss_pred ceeeHHHHHHHHHHHHHH----------HcCCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEee
Confidence 556667777777666542 245567899999999999999999999999999887654
No 442
>PRK04220 2-phosphoglycerate kinase; Provisional
Probab=96.16 E-value=0.0059 Score=60.36 Aligned_cols=30 Identities=23% Similarity=0.206 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
.|.-|++.|++|||||++|..+|..++.+.
T Consensus 91 ~p~iIlI~G~sgsGKStlA~~La~~l~~~~ 120 (301)
T PRK04220 91 EPIIILIGGASGVGTSTIAFELASRLGIRS 120 (301)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 356799999999999999999999998873
No 443
>PRK14738 gmk guanylate kinase; Provisional
Probab=96.15 E-value=0.0046 Score=58.11 Aligned_cols=24 Identities=21% Similarity=0.371 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
++-++|.||+|+|||+|++++...
T Consensus 13 ~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 13 PLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CeEEEEECcCCCCHHHHHHHHHhc
Confidence 467889999999999999999754
No 444
>PRK11545 gntK gluconate kinase 1; Provisional
Probab=96.15 E-value=0.0042 Score=56.09 Aligned_cols=25 Identities=36% Similarity=0.664 Sum_probs=21.8
Q ss_pred EcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 255 FGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 255 ~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.|||||||||++++++..++..++.
T Consensus 1 ~G~sGsGKSTla~~la~~l~~~~~~ 25 (163)
T PRK11545 1 MGVSGSGKSAVASEVAHQLHAAFLD 25 (163)
T ss_pred CCCCCCcHHHHHHHHHHHhCCeEEe
Confidence 4999999999999999999875553
No 445
>CHL00195 ycf46 Ycf46; Provisional
Probab=96.14 E-value=0.05 Score=57.80 Aligned_cols=109 Identities=17% Similarity=0.223 Sum_probs=76.1
Q ss_pred cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHH
Q 012000 298 RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLL 377 (473)
Q Consensus 298 ~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~i 377 (473)
+.+|.+.+++....+ ....+.+..+...... .+..++++ +. ...+++.|.+ +..++.+|+|+.+++..+
T Consensus 82 ~~~~vl~d~h~~~~~---~~~~r~l~~l~~~~~~----~~~~~i~~-~~--~~~~p~el~~-~~~~~~~~lP~~~ei~~~ 150 (489)
T CHL00195 82 PALFLLKDFNRFLND---ISISRKLRNLSRILKT----QPKTIIII-AS--ELNIPKELKD-LITVLEFPLPTESEIKKE 150 (489)
T ss_pred CcEEEEecchhhhcc---hHHHHHHHHHHHHHHh----CCCEEEEE-cC--CCCCCHHHHh-ceeEEeecCcCHHHHHHH
Confidence 457777877665521 1223333334433332 23334444 33 2467776655 446689999999999999
Q ss_pred HHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 378 LKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 378 l~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
++.+....+..+++..++.|++.+.|+|..++..++..+.
T Consensus 151 l~~~~~~~~~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~ 190 (489)
T CHL00195 151 LTRLIKSLNIKIDSELLENLTRACQGLSLERIRRVLSKII 190 (489)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 9988877788889999999999999999999999998754
No 446
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=96.12 E-value=0.019 Score=56.27 Aligned_cols=31 Identities=29% Similarity=0.349 Sum_probs=21.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
|+|+|.||+|||++|+.|+..+ +..+..++.
T Consensus 4 iil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~ 37 (270)
T PF08433_consen 4 IILCGLPCSGKTTRAKELKKYLEEKGKEVVIISD 37 (270)
T ss_dssp EEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-T
T ss_pred EEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 7899999999999999999865 455555553
No 447
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=96.12 E-value=0.011 Score=56.48 Aligned_cols=39 Identities=15% Similarity=0.285 Sum_probs=30.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCcc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l 285 (473)
.....++++||||||||+|+..++.+. +.+.+.++..+-
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~ 64 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT 64 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC
Confidence 445678999999999999999997653 667777766443
No 448
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=96.11 E-value=0.0084 Score=57.00 Aligned_cols=39 Identities=31% Similarity=0.393 Sum_probs=28.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecCc
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSASS 284 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~~ 284 (473)
..+...+|+.||||||||+|+..++.+. +-+.+.++..+
T Consensus 16 ip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee 58 (226)
T PF06745_consen 16 IPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEE 58 (226)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS
T ss_pred CCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecC
Confidence 3445679999999999999999876432 77777777544
No 449
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=96.11 E-value=0.0055 Score=52.57 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
..-|+|+|+=|+|||+++|++++.++..-
T Consensus 15 g~vi~L~GdLGaGKTtf~r~l~~~lg~~~ 43 (123)
T PF02367_consen 15 GDVILLSGDLGAGKTTFVRGLARALGIDE 43 (123)
T ss_dssp -EEEEEEESTTSSHHHHHHHHHHHTT--S
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHcCCCC
Confidence 45699999999999999999999998765
No 450
>TIGR00017 cmk cytidylate kinase. This family consists of cytidylate kinase, which catalyzes the phosphorylation of cytidine 5-monophosphate (dCMP) to cytidine 5 -diphosphate (dCDP) in the presence of ATP or GTP. UMP and dCMP can also act as acceptors.
Probab=96.09 E-value=0.0061 Score=57.82 Aligned_cols=29 Identities=34% Similarity=0.559 Sum_probs=26.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.|.|.||+||||||+++.||.+++..++.
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~~~~~~~~ 32 (217)
T TIGR00017 4 IIAIDGPSGAGKSTVAKAVAEKLGYAYLD 32 (217)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceee
Confidence 57899999999999999999999987774
No 451
>PRK03846 adenylylsulfate kinase; Provisional
Probab=96.09 E-value=0.0085 Score=55.87 Aligned_cols=39 Identities=18% Similarity=0.284 Sum_probs=29.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCcc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l 285 (473)
..+.-+.|.|++|+|||||++.++..+ +...+.++...+
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d~~ 63 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGDNV 63 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCEeH
Confidence 345678899999999999999999976 344566655443
No 452
>PRK09354 recA recombinase A; Provisional
Probab=96.08 E-value=0.022 Score=57.62 Aligned_cols=35 Identities=31% Similarity=0.414 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+-+++|||||||||+||..++.+. +...+.++..
T Consensus 60 G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E 97 (349)
T PRK09354 60 GRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAE 97 (349)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCc
Confidence 3457899999999999999876543 5666666644
No 453
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=96.06 E-value=0.0083 Score=54.47 Aligned_cols=33 Identities=33% Similarity=0.359 Sum_probs=26.8
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
+++.||||+|||+++..+|..+ +..+..+++..
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 7899999999999999998765 55666666554
No 454
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=96.06 E-value=0.011 Score=57.82 Aligned_cols=50 Identities=22% Similarity=0.276 Sum_probs=37.9
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..+++++.-.+...+.|++++.. +...+++.||+|+||||+++++...+.
T Consensus 56 ~~~l~~lg~~~~~~~~l~~~~~~-------------~~GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 56 ILDLEKLGLKPENLEIFRKLLEK-------------PHGIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCCHHHcCCCHHHHHHHHHHHhc-------------CCCEEEEECCCCCcHHHHHHHHHhhhC
Confidence 35778887777777777766631 123489999999999999999987763
No 455
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.04 E-value=0.084 Score=50.69 Aligned_cols=120 Identities=13% Similarity=0.149 Sum_probs=66.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC---cEEEEecCc--cchhh----------------------hh---hhhh---
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA---TFFNVSASS--LTSKW----------------------VG---EGEK--- 295 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~---~~~~v~~~~--l~~~~----------------------~g---~~~~--- 295 (473)
+-.+++.|++|||||+|+..+...+.. +++.+.... ...++ .. ....
T Consensus 13 ~fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~ 92 (241)
T PF04665_consen 13 PFRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSP 92 (241)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhc
Confidence 456999999999999999998776532 222222110 00000 00 0000
Q ss_pred ----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcH
Q 012000 296 ----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDE 371 (473)
Q Consensus 296 ----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~ 371 (473)
.-+.++.+|++... ........+++. . ...-++.+|.++.....|++.++.-.+..+.+. -+.
T Consensus 93 ~~k~~~~~LiIlDD~~~~------~~k~~~l~~~~~--~----gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~ 159 (241)
T PF04665_consen 93 QKKNNPRFLIILDDLGDK------KLKSKILRQFFN--N----GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSK 159 (241)
T ss_pred ccCCCCCeEEEEeCCCCc------hhhhHHHHHHHh--c----ccccceEEEEEeeecccCCHHHhhcceEEEEec-CcH
Confidence 11347778998321 111222333332 1 123347788888888899999988676666565 355
Q ss_pred HHHHHHHHHH
Q 012000 372 NVRRLLLKHK 381 (473)
Q Consensus 372 ~~r~~il~~~ 381 (473)
.....|++.+
T Consensus 160 ~dl~~i~~~~ 169 (241)
T PF04665_consen 160 RDLENIYRNM 169 (241)
T ss_pred HHHHHHHHhc
Confidence 5555555544
No 456
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=96.04 E-value=0.012 Score=57.30 Aligned_cols=39 Identities=31% Similarity=0.451 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCcc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSL 285 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l 285 (473)
.....+|++|+||||||+++..++.+. |-+++.++..+.
T Consensus 21 p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e~ 62 (260)
T COG0467 21 PRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEES 62 (260)
T ss_pred cCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecCC
Confidence 445679999999999999999887653 667777776543
No 457
>PRK13764 ATPase; Provisional
Probab=96.04 E-value=0.0075 Score=65.23 Aligned_cols=26 Identities=42% Similarity=0.704 Sum_probs=23.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..++|++|||||||||++++++..+.
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 46899999999999999999998774
No 458
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=96.00 E-value=0.006 Score=57.29 Aligned_cols=25 Identities=24% Similarity=0.267 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.-+.|.||+|+|||||+++|+..++
T Consensus 7 ~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 7 IIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3466899999999999999999875
No 459
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.00 E-value=0.0077 Score=56.05 Aligned_cols=31 Identities=26% Similarity=0.259 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.-|.|+|++||||||+++.++. +|.+++..+
T Consensus 3 ~~i~ltG~~gsGKst~~~~l~~-~g~~~i~~D 33 (194)
T PRK00081 3 LIIGLTGGIGSGKSTVANLFAE-LGAPVIDAD 33 (194)
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEec
Confidence 3588999999999999999998 887766543
No 460
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.96 E-value=0.0058 Score=57.07 Aligned_cols=24 Identities=29% Similarity=0.425 Sum_probs=21.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
-+++.||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 378999999999999999988774
No 461
>PF06431 Polyoma_lg_T_C: Polyomavirus large T antigen C-terminus; InterPro: IPR010932 The group of polyomaviruses is formed by the homonymous murine virus (Py) as well as other representative members such as the simian virus 40 (SV40) and the human BK and JC viruses []. Their large T antigen (T-ag) protein binds to and activates DNA replication from the origin of DNA replication (ori). Insofar as is known, the T-ag binds to the origin first as a monomer to its pentanucleotide recognition element. The monomers are then thought to assemble into hexamers and double hexamers, which constitute the form that is active in initiation of DNA replication. When bound to the ori, T-ag double hexamers encircle DNA []. T-ag is a multidomain protein that contains an N-terminal J domain, which mediates protein interactions (see PDOC00553 from PROSITEDOC, IPR001623 from INTERPRO), a central origin-binding domain (OBD), and a C-terminal superfamily 3 helicase domain (see PDOC51206 from PROSITEDOC, IPR010932 from INTERPRO) []. This entry represents the helicase domain of LTag, which assembles into a hexameric structure containing a positively charged central channel that can bind both single- and double-stranded DNA []. ATP binding and hydrolysis trigger large conformational changes which are thought to be coupled to the melting of origin DNA and the unwinding of duplex DNA []. These conformational changes cause the angles and orientations between regions of a monomer to alter, creating what was described as an "iris"-like motion in the hexamer. In addition to this, six beta hairpins on the channel surface move longitudinally along the central channel, possibly serving as a motor for pulling DNA into the LTag double hexamer for unwinding.; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 2H1L_H 1SVO_A 1SVM_E 1SVL_B 1N25_A 4E2I_K.
Probab=95.95 E-value=0.0082 Score=60.15 Aligned_cols=117 Identities=18% Similarity=0.152 Sum_probs=57.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc-chhhhhhhhhhhcceeeeeccccccccC---cchHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL-TSKWVGEGEKLVRTLFMIDSIMSTRMAN---ENDASRRLKSE 324 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l-~~~~~g~~~~~~~~if~IDei~~~~~~~---~~~~~~~~~~~ 324 (473)
.+.+||-||--|||||||.|+-.-+|...++|+++.- +.--.|-+-... .+.++++-+..... ..+..-.-+.-
T Consensus 155 kRy~lFkGPvNsGKTTlAAAlLdL~gG~~LNvN~p~dkl~FELG~AiDQf--mVvFEDVKGq~~~~~~Lp~G~G~~NLDN 232 (417)
T PF06431_consen 155 KRYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPPDKLNFELGCAIDQF--MVVFEDVKGQPSDNKDLPPGQGMNNLDN 232 (417)
T ss_dssp B-EEEEE-STTSSHHHHHHHHHHHH-EEEE-TSS-TTTHHHHHCCCTT-S--EEEEEEE--SSTTTTT----SHHHHHHT
T ss_pred ceeEEEecCcCCchHHHHHHHHHhcCCceeecCCChhhcchhhheeeceE--EEEEEecCCCcCCCCCCCCCCCcccchh
Confidence 4789999999999999999999999999999987631 111122222222 22244443322111 11111122334
Q ss_pred HHHHhcCcCC-----CC-CC--c--EEEEeecCCCCCCCHHHhcccccccccCC
Q 012000 325 FLIQFDGVTS-----NP-ND--L--VIVMGATNKPQELDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 325 ll~~ldg~~~-----~~-~~--~--v~vI~tTn~~~~Ld~al~rRf~~~i~~~~ 368 (473)
|-.-+||... .. ++ . -.-|.|+|. ..|+..+.-||...+.|..
T Consensus 233 LRD~LDG~V~VNLErKH~NK~sQiFPPgIvTmNe-Y~iP~Tv~vRf~~~~~F~~ 285 (417)
T PF06431_consen 233 LRDYLDGAVKVNLERKHQNKRSQIFPPGIVTMNE-YKIPQTVKVRFCKVLDFRP 285 (417)
T ss_dssp THHHHH-SS-EEEECSSSEEEEE----EEEEESS--B--HHHHTTEEEEEE---
T ss_pred hhhhccCceeechhhhhcccccccCCCceEeecc-ccCCcceeeeeEeeEeccc
Confidence 4455555421 00 00 0 124556764 6788888889998877754
No 462
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=95.93 E-value=0.01 Score=54.69 Aligned_cols=30 Identities=23% Similarity=0.264 Sum_probs=25.1
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
|.|.||+|+||||+++.|++.+ |..++.+.
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~~g~~v~~~~ 35 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEARGYEVVLTR 35 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 7899999999999999999988 55555543
No 463
>PRK13951 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.91 E-value=0.0075 Score=64.15 Aligned_cols=31 Identities=26% Similarity=0.501 Sum_probs=28.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+||||||++++.+|+.++.+|+..+
T Consensus 2 ~I~l~G~~GsGKSTv~~~La~~lg~~~id~D 32 (488)
T PRK13951 2 RIFLVGMMGSGKSTIGKRVSEVLDLQFIDMD 32 (488)
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCeEEECc
Confidence 4899999999999999999999999999654
No 464
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=95.91 E-value=0.017 Score=55.23 Aligned_cols=37 Identities=22% Similarity=0.240 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-++|+||||||||+++..++... +...+.++..
T Consensus 22 ~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e 61 (230)
T PRK08533 22 PAGSLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQ 61 (230)
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCC
Confidence 334578999999999999986654433 4566666544
No 465
>PRK07667 uridine kinase; Provisional
Probab=95.90 E-value=0.011 Score=54.98 Aligned_cols=36 Identities=17% Similarity=0.132 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCcc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l 285 (473)
.-|.|.|+||+||||+|+.|+..++ .++..++..++
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~~~~~~~~i~~Dd~ 56 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQEGIPFHIFHIDDY 56 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEEcCcc
Confidence 4577999999999999999999763 45555555443
No 466
>PLN02748 tRNA dimethylallyltransferase
Probab=95.89 E-value=0.02 Score=60.19 Aligned_cols=36 Identities=31% Similarity=0.510 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
+.-|+|.||+|+|||+||..||..++..+++.+.-.
T Consensus 22 ~~~i~i~GptgsGKs~la~~la~~~~~eii~~DsmQ 57 (468)
T PLN02748 22 AKVVVVMGPTGSGKSKLAVDLASHFPVEIINADSMQ 57 (468)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCeeEEcCchhe
Confidence 346899999999999999999999998888766433
No 467
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=95.89 E-value=0.012 Score=54.11 Aligned_cols=38 Identities=18% Similarity=0.308 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.++.-++|.|+||+|||++++.++..+ +...+.++...
T Consensus 16 ~~~~~i~i~G~~GsGKstla~~l~~~l~~~~~~~~~l~~d~ 56 (184)
T TIGR00455 16 HRGVVIWLTGLSGSGKSTIANALEKKLESKGYRVYVLDGDN 56 (184)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECChH
Confidence 345678899999999999999999886 33445555433
No 468
>PRK14021 bifunctional shikimate kinase/3-dehydroquinate synthase; Provisional
Probab=95.89 E-value=0.0071 Score=65.27 Aligned_cols=33 Identities=27% Similarity=0.378 Sum_probs=30.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
.-|+|.|.|||||||+++.+|+.++.+|+..+.
T Consensus 7 ~~i~LiG~~GaGKttvg~~LA~~L~~~fiD~D~ 39 (542)
T PRK14021 7 PQAVIIGMMGAGKTRVGKEVAQMMRLPFADADV 39 (542)
T ss_pred ccEEEECCCCCCHHHHHHHHHHHhCCCEEEchH
Confidence 359999999999999999999999999998763
No 469
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.87 E-value=0.036 Score=61.42 Aligned_cols=25 Identities=36% Similarity=0.505 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+..++|.||.|+||||++..||..+
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhH
Confidence 4568899999999999999998755
No 470
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=95.87 E-value=0.0075 Score=54.17 Aligned_cols=25 Identities=40% Similarity=0.517 Sum_probs=22.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
+.-.++|.||+|||||+|.+++|.-
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~L 52 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASL 52 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhc
Confidence 3456999999999999999999974
No 471
>PF07931 CPT: Chloramphenicol phosphotransferase-like protein; InterPro: IPR012853 The members of this family are all similar to chloramphenicol 3-O phosphotransferase (CPT, Q56148 from SWISSPROT) expressed by Streptomyces venezuelae. Chloramphenicol (Cm) is a metabolite produced by this bacterium that can inhibit ribosomal peptidyl transferase activity and therefore protein production. By transferring a phosphate group to the C-3 hydroxyl group of Cm, CPT inactivates this potentially lethal metabolite [, ]. ; GO: 0005524 ATP binding, 0016740 transferase activity; PDB: 1QHX_A 1QHN_A 1GRR_A 1QHY_A 1QHS_A 1GRQ_A.
Probab=95.84 E-value=0.0081 Score=54.85 Aligned_cols=38 Identities=21% Similarity=0.458 Sum_probs=32.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
-|+|.|||-+|||++|++|...+..+|+.++...+...
T Consensus 3 iI~LNG~sSSGKSsia~~Lq~~~~~p~~~l~~D~f~~~ 40 (174)
T PF07931_consen 3 IIILNGPSSSGKSSIARALQERLPEPWLHLSVDTFVDM 40 (174)
T ss_dssp EEEEEE-TTSSHHHHHHHHHHHSSS-EEEEEHHHHHHH
T ss_pred EEEEeCCCCCCHHHHHHHHHHhCcCCeEEEecChHHhh
Confidence 58999999999999999999999999999987776553
No 472
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=95.84 E-value=0.03 Score=59.71 Aligned_cols=38 Identities=18% Similarity=0.192 Sum_probs=28.1
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..+...+|+.||||+|||+|+..++.+. +-+.+.++..
T Consensus 260 ~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~e 300 (484)
T TIGR02655 260 FFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYE 300 (484)
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEee
Confidence 3455679999999999999999887754 4455555533
No 473
>PRK05973 replicative DNA helicase; Provisional
Probab=95.84 E-value=0.014 Score=56.05 Aligned_cols=37 Identities=32% Similarity=0.401 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-+||.|+||+|||+++..++.+. |.+.+.++..
T Consensus 62 ~~Gsl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlE 101 (237)
T PRK05973 62 KPGDLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLE 101 (237)
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEe
Confidence 445678999999999999999887654 6566555543
No 474
>PRK00023 cmk cytidylate kinase; Provisional
Probab=95.83 E-value=0.0078 Score=57.40 Aligned_cols=31 Identities=26% Similarity=0.431 Sum_probs=27.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
..|.+.||||||||++++.+|.+++.+++..
T Consensus 5 ~~i~i~g~~gsGksti~~~la~~~~~~~~~~ 35 (225)
T PRK00023 5 IVIAIDGPAGSGKGTVAKILAKKLGFHYLDT 35 (225)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 4688999999999999999999999887753
No 475
>PRK08099 bifunctional DNA-binding transcriptional repressor/ NMN adenylyltransferase; Provisional
Probab=95.82 E-value=0.0096 Score=61.68 Aligned_cols=31 Identities=23% Similarity=0.268 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.+.|.|.|++|||||||+++||..+|..++.
T Consensus 219 ~~~IvI~G~~gsGKTTL~~~La~~~g~~~v~ 249 (399)
T PRK08099 219 VRTVAILGGESSGKSTLVNKLANIFNTTSAW 249 (399)
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHhCCCeee
Confidence 4679999999999999999999999887654
No 476
>PRK10536 hypothetical protein; Provisional
Probab=95.81 E-value=0.0072 Score=58.40 Aligned_cols=22 Identities=36% Similarity=0.468 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
-+++.||+|||||+||.++|.+
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999999885
No 477
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=95.80 E-value=0.012 Score=57.37 Aligned_cols=36 Identities=14% Similarity=0.208 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
.+...++++||||||||+++..+|.+. +-+.+.++.
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~ 72 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTV 72 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEe
Confidence 345678999999999999999886643 445555554
No 478
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=95.79 E-value=0.019 Score=54.61 Aligned_cols=38 Identities=21% Similarity=0.262 Sum_probs=27.9
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..+...++++||||||||+|+..++.+. +...+.++..
T Consensus 17 i~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e 57 (229)
T TIGR03881 17 IPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTE 57 (229)
T ss_pred CcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEcc
Confidence 3445679999999999999999876532 4556666653
No 479
>PRK14733 coaE dephospho-CoA kinase; Provisional
Probab=95.79 E-value=0.011 Score=55.42 Aligned_cols=32 Identities=9% Similarity=0.118 Sum_probs=27.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
..|-|+|++|||||++++.++.++|.+++..+
T Consensus 7 ~~IglTG~iGsGKStv~~~l~~~lg~~vidaD 38 (204)
T PRK14733 7 YPIGITGGIASGKSTATRILKEKLNLNVVCAD 38 (204)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCeEEecc
Confidence 46889999999999999999999998876543
No 480
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=95.78 E-value=0.022 Score=62.66 Aligned_cols=34 Identities=26% Similarity=0.401 Sum_probs=25.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..+|++||||||||+++.++...+ +..++.+..+
T Consensus 174 ~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~s 210 (637)
T TIGR00376 174 DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPS 210 (637)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCc
Confidence 358899999999999888876654 5566655543
No 481
>PF01121 CoaE: Dephospho-CoA kinase; InterPro: IPR001977 This family contains dephospho-CoA kinases (2.7.1.24 from EC), which catalyzes the final step in CoA biosynthesis, the phosphorylation of the 3'-hydroxyl group of ribose using ATP as a phosphate donor. The crystal structures of a number of the proteins in this entry have been determined, including the structure of the protein from Haemophilus influenzae to 2.0-A resolution in a comlex with ATP. The protein consists of three domains: the nucleotide-binding domain with a five-stranded parallel beta-sheet, the substrate-binding alpha-helical domain, and the lid domain formed by a pair of alpha-helices; the overall topology of the protein resembles the structures of other nucleotide kinases [].; GO: 0004140 dephospho-CoA kinase activity, 0005524 ATP binding, 0015937 coenzyme A biosynthetic process; PDB: 1VHL_A 1N3B_A 1VIY_A 1VHT_B 1T3H_B 1UF9_C 2F6R_A 2GRJ_D 2IF2_C 1JJV_A.
Probab=95.78 E-value=0.023 Score=52.23 Aligned_cols=29 Identities=24% Similarity=0.336 Sum_probs=24.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
|-|+|..|||||++++.++. +|.+++..+
T Consensus 3 IglTG~igsGKStv~~~l~~-~G~~vidaD 31 (180)
T PF01121_consen 3 IGLTGGIGSGKSTVSKILAE-LGFPVIDAD 31 (180)
T ss_dssp EEEEESTTSSHHHHHHHHHH-TT-EEEEHH
T ss_pred EEEECCCcCCHHHHHHHHHH-CCCCEECcc
Confidence 56899999999999999998 888888654
No 482
>PRK09518 bifunctional cytidylate kinase/GTPase Der; Reviewed
Probab=95.77 E-value=0.0084 Score=66.96 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|.|.|||||||||+++.||..++..++...
T Consensus 3 ~i~I~G~~GsGKST~ak~la~~l~~~~~~~g 33 (712)
T PRK09518 3 IVAIDGPAGVGKSSVSRALAQYLGYAYLDTG 33 (712)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeecC
Confidence 4789999999999999999999998777553
No 483
>PLN02348 phosphoribulokinase
Probab=95.76 E-value=0.067 Score=54.81 Aligned_cols=26 Identities=19% Similarity=0.172 Sum_probs=22.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
.-|-|.|++||||||+++.|+..++.
T Consensus 50 ~IIGIaG~SGSGKSTfA~~L~~~Lg~ 75 (395)
T PLN02348 50 VVIGLAADSGCGKSTFMRRLTSVFGG 75 (395)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45669999999999999999999864
No 484
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=95.76 E-value=0.0098 Score=59.23 Aligned_cols=25 Identities=40% Similarity=0.648 Sum_probs=22.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..++|+.||+|+||||++++++..+
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i 156 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEI 156 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHh
Confidence 4689999999999999999999876
No 485
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.76 E-value=0.034 Score=56.88 Aligned_cols=25 Identities=36% Similarity=0.502 Sum_probs=19.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+-+.|.||.|+||||..--+|..+
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHH
Confidence 5678899999999998666565544
No 486
>PRK04328 hypothetical protein; Provisional
Probab=95.75 E-value=0.019 Score=55.63 Aligned_cols=38 Identities=21% Similarity=0.276 Sum_probs=28.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH---cCCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e---~~~~~~~v~~~~ 284 (473)
.+...+|++||||||||+|+..++.+ .|-+.+.++..+
T Consensus 21 p~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee 61 (249)
T PRK04328 21 PERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE 61 (249)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC
Confidence 34567899999999999999887654 255666666543
No 487
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=95.74 E-value=0.014 Score=59.63 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
.-.+|+||||+|||+|++.|++....
T Consensus 170 QR~lIvgppGvGKTTLaK~Ian~I~~ 195 (416)
T PRK09376 170 QRGLIVAPPKAGKTVLLQNIANSITT 195 (416)
T ss_pred ceEEEeCCCCCChhHHHHHHHHHHHh
Confidence 34888999999999999999987643
No 488
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=95.72 E-value=0.0095 Score=49.75 Aligned_cols=22 Identities=41% Similarity=0.551 Sum_probs=20.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVA 270 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA 270 (473)
...+.|.||+|+|||+|++++.
T Consensus 15 ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 15 KVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred CEEEEEEcCCCCCHHHHHHHhh
Confidence 4679999999999999999987
No 489
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.72 E-value=0.018 Score=54.95 Aligned_cols=26 Identities=31% Similarity=0.400 Sum_probs=21.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.+..-+.|+||||||||+|+..++..
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~ 42 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVT 42 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34456789999999999999999854
No 490
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=95.71 E-value=0.017 Score=53.14 Aligned_cols=29 Identities=41% Similarity=0.708 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
.+.++|.||+|+|||+|++.|..+....|
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~~~~ 30 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFPDKF 30 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHSTTTE
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhccccc
Confidence 36799999999999999999999887655
No 491
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=95.69 E-value=0.01 Score=55.92 Aligned_cols=25 Identities=36% Similarity=0.494 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
|.+.|+.||||||||||.+-||+-+
T Consensus 137 ~lntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 137 WLNTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred ceeeEEecCCCCChHHHHHHHHHHh
Confidence 6679999999999999999999865
No 492
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=95.69 E-value=0.013 Score=49.76 Aligned_cols=35 Identities=29% Similarity=0.393 Sum_probs=25.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEEecCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNVSASS 284 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v~~~~ 284 (473)
++++++||+|+|||+++..++.++. ..++.+.+..
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~ 40 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTR 40 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcH
Confidence 3689999999999999988877653 3444444443
No 493
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=95.67 E-value=0.035 Score=50.16 Aligned_cols=24 Identities=29% Similarity=0.483 Sum_probs=18.8
Q ss_pred ceEEEEcCCCCcHHH-HHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTM-LAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~-La~aiA~e~ 273 (473)
+.+++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 579999999999999 555555544
No 494
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=95.67 E-value=0.028 Score=57.39 Aligned_cols=23 Identities=43% Similarity=0.583 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
-+++.|.||||||.||-.++.++
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 47899999999999999999987
No 495
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.67 E-value=0.062 Score=52.63 Aligned_cols=26 Identities=31% Similarity=0.428 Sum_probs=23.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+...++|+||+|+|||++++.++..+
T Consensus 74 ~~~~i~~~G~~g~GKTtl~~~l~~~l 99 (270)
T PRK06731 74 EVQTIALIGPTGVGKTTTLAKMAWQF 99 (270)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHHHH
Confidence 45689999999999999999998875
No 496
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=95.65 E-value=0.0096 Score=52.82 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+||.||+|+|||++|.++...
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 479999999999999999988875
No 497
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=95.64 E-value=0.03 Score=58.25 Aligned_cols=37 Identities=22% Similarity=0.168 Sum_probs=29.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.++.-|+|+||+|+||||++..+|..+ |..+..+++.
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D 137 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCAD 137 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCc
Confidence 345678999999999999999998766 5566666554
No 498
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=95.64 E-value=0.021 Score=56.05 Aligned_cols=23 Identities=22% Similarity=0.300 Sum_probs=20.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcC
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+-|.||+|||||||++.|+..++
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll~ 24 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLFG 24 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhhC
Confidence 56889999999999999998874
No 499
>PRK12337 2-phosphoglycerate kinase; Provisional
Probab=95.64 E-value=0.012 Score=61.34 Aligned_cols=30 Identities=33% Similarity=0.320 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
.|.-++++|+||||||++|..+|..++...
T Consensus 254 ~p~vil~~G~~G~GKSt~a~~LA~~lg~~~ 283 (475)
T PRK12337 254 RPLHVLIGGVSGVGKSVLASALAYRLGITR 283 (475)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcCCcE
Confidence 467899999999999999999999999863
No 500
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=95.63 E-value=0.011 Score=44.28 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=20.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..+|+||.|+|||++.-|+.--+
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~L 47 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTVL 47 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 49999999999999999987644
Done!