Query 012000
Match_columns 473
No_of_seqs 452 out of 2774
Neff 8.0
Searched_HMMs 29240
Date Mon Mar 25 19:37:57 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012000.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012000hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2zan_A Vacuolar protein sortin 100.0 6.2E-57 2.1E-61 470.5 23.9 384 52-473 6-443 (444)
2 4b4t_J 26S protease regulatory 100.0 1.4E-46 4.8E-51 381.4 20.2 250 203-466 135-404 (405)
3 4b4t_H 26S protease regulatory 100.0 5.8E-45 2E-49 373.8 20.6 248 206-467 199-467 (467)
4 1xwi_A SKD1 protein; VPS4B, AA 100.0 7.3E-44 2.5E-48 356.9 27.9 267 206-473 2-321 (322)
5 4b4t_I 26S protease regulatory 100.0 2.5E-45 8.4E-50 373.2 15.8 242 205-460 171-432 (437)
6 4b4t_L 26S protease subunit RP 100.0 2.7E-44 9.3E-49 370.1 19.4 242 204-459 169-430 (437)
7 4b4t_M 26S protease regulatory 100.0 3.2E-44 1.1E-48 369.2 19.2 239 205-457 170-428 (434)
8 3eie_A Vacuolar protein sortin 100.0 8.9E-43 3.1E-47 349.0 25.2 268 205-473 7-320 (322)
9 4b4t_K 26S protease regulatory 100.0 2.1E-43 7.2E-48 362.9 18.2 242 205-460 161-424 (428)
10 2qp9_X Vacuolar protein sortin 100.0 1.4E-42 4.8E-47 352.1 23.9 278 195-473 30-353 (355)
11 3cf2_A TER ATPase, transitiona 100.0 3.8E-45 1.3E-49 400.6 5.2 263 207-472 468-764 (806)
12 3d8b_A Fidgetin-like protein 1 100.0 1.9E-39 6.4E-44 329.5 24.2 287 187-473 55-356 (357)
13 3b9p_A CG5977-PA, isoform A; A 100.0 1.6E-38 5.5E-43 313.8 23.4 276 197-472 2-293 (297)
14 3vfd_A Spastin; ATPase, microt 100.0 2.6E-38 8.9E-43 324.7 22.4 283 191-473 90-387 (389)
15 3cf0_A Transitional endoplasmi 100.0 1.9E-38 6.6E-43 314.6 18.9 264 205-471 4-301 (301)
16 3cf2_A TER ATPase, transitiona 100.0 4E-38 1.4E-42 345.1 14.3 246 209-457 197-465 (806)
17 2x8a_A Nuclear valosin-contain 100.0 2E-36 6.9E-41 296.0 18.6 250 209-460 3-273 (274)
18 3h4m_A Proteasome-activating n 100.0 1.1E-31 3.8E-36 263.1 23.0 252 207-472 8-281 (285)
19 3hu3_A Transitional endoplasmi 100.0 1.7E-32 5.8E-37 288.2 15.2 259 211-472 199-482 (489)
20 1ypw_A Transitional endoplasmi 100.0 3.7E-34 1.3E-38 318.1 -5.8 263 206-471 467-763 (806)
21 2ce7_A Cell division protein F 100.0 8.4E-30 2.9E-34 265.9 23.5 230 210-454 10-259 (476)
22 1lv7_A FTSH; alpha/beta domain 100.0 8.3E-30 2.9E-34 246.3 21.5 232 208-454 4-255 (257)
23 2qz4_A Paraplegin; AAA+, SPG7, 100.0 7.3E-30 2.5E-34 246.6 16.5 230 211-454 1-252 (262)
24 2dhr_A FTSH; AAA+ protein, hex 100.0 1E-28 3.4E-33 259.2 21.8 230 210-454 25-274 (499)
25 1ixz_A ATP-dependent metallopr 100.0 2E-28 6.9E-33 236.2 19.4 229 205-448 5-253 (254)
26 2r62_A Cell division protease 100.0 4.3E-30 1.5E-34 249.6 1.7 238 208-459 3-261 (268)
27 1iy2_A ATP-dependent metallopr 100.0 4.8E-27 1.6E-31 229.8 21.8 228 206-448 30-277 (278)
28 1ypw_A Transitional endoplasmi 99.9 3.5E-25 1.2E-29 246.0 17.3 245 209-456 197-464 (806)
29 3t15_A Ribulose bisphosphate c 99.9 1.6E-22 5.4E-27 199.4 12.7 159 246-411 33-222 (293)
30 3uk6_A RUVB-like 2; hexameric 99.9 2.2E-21 7.7E-26 196.5 18.9 209 212-451 40-330 (368)
31 3syl_A Protein CBBX; photosynt 99.9 5.4E-22 1.9E-26 196.2 11.4 226 216-446 31-289 (309)
32 3pfi_A Holliday junction ATP-d 99.9 2E-20 6.8E-25 187.5 22.6 220 205-453 18-256 (338)
33 1hqc_A RUVB; extended AAA-ATPa 99.8 9.6E-20 3.3E-24 181.1 20.8 236 208-470 4-260 (324)
34 1ofh_A ATP-dependent HSL prote 99.8 4.4E-20 1.5E-24 182.0 14.9 232 216-452 15-300 (310)
35 2chg_A Replication factor C sm 99.8 1.1E-18 3.8E-23 162.3 18.9 200 208-449 9-224 (226)
36 3pvs_A Replication-associated 99.8 3.3E-19 1.1E-23 185.4 16.5 216 205-457 15-250 (447)
37 2c9o_A RUVB-like 1; hexameric 99.8 1.5E-18 5.1E-23 181.3 21.1 233 211-470 32-454 (456)
38 3m6a_A ATP-dependent protease 99.8 3.4E-19 1.2E-23 189.9 12.6 225 212-452 77-342 (543)
39 1njg_A DNA polymerase III subu 99.8 2.8E-18 9.7E-23 161.4 16.9 202 207-448 14-248 (250)
40 1g41_A Heat shock protein HSLU 99.8 7.5E-20 2.6E-24 188.4 6.0 159 216-378 15-188 (444)
41 1in4_A RUVB, holliday junction 99.8 6.6E-17 2.3E-21 162.0 26.2 238 206-470 15-272 (334)
42 3u61_B DNA polymerase accessor 99.8 1.2E-18 4.1E-23 173.5 13.5 188 206-417 16-220 (324)
43 1sxj_A Activator 1 95 kDa subu 99.8 1E-17 3.4E-22 177.7 20.5 199 206-416 29-255 (516)
44 3bos_A Putative DNA replicatio 99.8 1E-17 3.4E-22 158.4 18.2 205 212-449 24-241 (242)
45 2r44_A Uncharacterized protein 99.8 2.1E-17 7.1E-22 165.1 20.3 212 207-451 18-297 (331)
46 2z4s_A Chromosomal replication 99.8 1.2E-17 4.1E-22 173.5 19.2 211 211-453 100-334 (440)
47 1sxj_D Activator 1 41 kDa subu 99.8 5.3E-18 1.8E-22 170.2 16.1 210 205-450 26-262 (353)
48 1l8q_A Chromosomal replication 99.8 2.2E-17 7.4E-22 164.6 18.7 210 211-451 6-240 (324)
49 3hws_A ATP-dependent CLP prote 99.7 4.3E-18 1.5E-22 172.5 13.0 228 217-448 16-346 (363)
50 1g8p_A Magnesium-chelatase 38 99.7 2E-17 7E-22 165.9 17.6 211 210-451 18-322 (350)
51 2chq_A Replication factor C sm 99.7 1.2E-17 4.1E-22 165.0 15.7 187 205-417 6-208 (319)
52 1iqp_A RFCS; clamp loader, ext 99.7 4E-17 1.4E-21 161.8 18.5 188 205-418 14-217 (327)
53 2v1u_A Cell division control p 99.7 1.2E-16 4.2E-21 161.8 21.2 214 213-451 16-276 (387)
54 1d2n_A N-ethylmaleimide-sensit 99.7 1.5E-17 5.1E-22 161.6 13.8 216 215-454 32-267 (272)
55 1jr3_A DNA polymerase III subu 99.7 5.8E-17 2E-21 163.9 17.3 189 206-419 6-227 (373)
56 4fcw_A Chaperone protein CLPB; 99.7 2.3E-17 7.8E-22 162.9 13.7 197 216-423 17-281 (311)
57 1sxj_B Activator 1 37 kDa subu 99.7 7.5E-17 2.6E-21 159.6 17.3 185 207-417 12-213 (323)
58 3pxg_A Negative regulator of g 99.7 1.5E-17 5.2E-22 174.1 11.8 182 205-420 169-385 (468)
59 1um8_A ATP-dependent CLP prote 99.7 1E-16 3.6E-21 163.0 14.5 228 217-449 22-363 (376)
60 1sxj_E Activator 1 40 kDa subu 99.7 2.3E-16 7.7E-21 158.7 16.4 191 205-420 3-244 (354)
61 2qby_B CDC6 homolog 3, cell di 99.7 4.2E-16 1.4E-20 158.2 17.6 203 216-452 20-271 (384)
62 1sxj_C Activator 1 40 kDa subu 99.7 1E-15 3.6E-20 153.5 18.4 185 206-416 15-215 (340)
63 1fnn_A CDC6P, cell division co 99.7 5.6E-15 1.9E-19 149.9 22.7 220 214-461 15-284 (389)
64 1r6b_X CLPA protein; AAA+, N-t 99.7 7.1E-16 2.4E-20 170.9 15.5 217 210-452 180-434 (758)
65 3pxi_A Negative regulator of g 99.6 7.9E-16 2.7E-20 170.4 15.4 198 215-423 490-727 (758)
66 1r6b_X CLPA protein; AAA+, N-t 99.6 7.8E-16 2.7E-20 170.5 14.9 196 217-423 459-718 (758)
67 1jbk_A CLPB protein; beta barr 99.6 8.1E-17 2.8E-21 146.1 5.5 155 205-378 11-194 (195)
68 3pxi_A Negative regulator of g 99.6 6.3E-16 2.1E-20 171.3 13.2 183 205-421 169-386 (758)
69 2qby_A CDC6 homolog 1, cell di 99.6 6.9E-15 2.3E-19 148.7 17.5 213 213-452 17-273 (386)
70 2bjv_A PSP operon transcriptio 99.6 9.1E-15 3.1E-19 141.2 15.9 190 213-420 3-240 (265)
71 1qvr_A CLPB protein; coiled co 99.6 7.7E-16 2.6E-20 172.6 9.4 200 203-421 157-393 (854)
72 1qvr_A CLPB protein; coiled co 99.6 9.3E-15 3.2E-19 163.8 15.8 198 215-423 557-822 (854)
73 3nbx_X ATPase RAVA; AAA+ ATPas 99.6 5E-14 1.7E-18 147.9 18.5 186 216-424 22-270 (500)
74 3f9v_A Minichromosome maintena 99.6 1.5E-15 5.2E-20 163.2 7.0 215 216-452 295-588 (595)
75 2w2u_A Hypothetical P60 katani 99.5 7.4E-15 2.5E-19 115.6 7.1 70 51-120 13-82 (83)
76 1ojl_A Transcriptional regulat 99.5 5.8E-14 2E-18 138.7 15.1 187 216-420 2-235 (304)
77 2p65_A Hypothetical protein PF 99.5 3E-15 1E-19 135.4 4.9 143 209-370 15-187 (187)
78 2v6y_A AAA family ATPase, P60 99.5 9.8E-15 3.4E-19 115.3 5.9 69 53-121 7-75 (83)
79 3te6_A Regulatory protein SIR3 99.5 2.4E-13 8.1E-18 134.5 15.6 187 218-424 22-290 (318)
80 1a5t_A Delta prime, HOLB; zinc 99.5 4.5E-13 1.6E-17 134.0 16.6 164 221-414 7-206 (334)
81 2dl1_A Spartin; SPG20, MIT, st 99.5 5.6E-13 1.9E-17 109.4 13.8 88 46-133 11-99 (116)
82 1wfd_A Hypothetical protein 15 99.5 6.1E-14 2.1E-18 113.2 7.7 74 51-124 9-82 (93)
83 4a5x_A MITD1, MIT domain-conta 99.5 7.8E-14 2.7E-18 110.6 6.7 69 55-123 14-82 (86)
84 3eab_A Spastin; spastin, MIT, 99.5 2.5E-13 8.5E-18 106.2 9.2 81 47-129 6-89 (89)
85 3k1j_A LON protease, ATP-depen 99.4 7.3E-13 2.5E-17 142.9 14.4 222 208-463 33-386 (604)
86 2v6x_A Vacuolar protein sortin 99.4 2.5E-13 8.7E-18 108.0 7.4 73 52-124 8-80 (85)
87 2cpt_A SKD1 protein, vacuolar 99.4 5.8E-13 2E-17 111.8 7.6 70 53-122 14-84 (117)
88 3vlf_B 26S protease regulatory 99.4 7E-13 2.4E-17 106.2 7.7 86 370-467 2-88 (88)
89 3n70_A Transport activator; si 99.4 1.2E-12 4.2E-17 114.7 8.5 129 217-368 2-143 (145)
90 3aji_B S6C, proteasome (prosom 99.3 1.3E-12 4.4E-17 103.5 6.8 82 370-464 2-83 (83)
91 3co5_A Putative two-component 99.3 3.5E-13 1.2E-17 118.0 2.3 130 217-368 5-141 (143)
92 1w5s_A Origin recognition comp 99.3 3.7E-11 1.3E-15 122.6 16.6 199 214-422 20-275 (412)
93 2gno_A DNA polymerase III, gam 99.3 1.3E-11 4.5E-16 121.7 12.6 157 220-412 1-173 (305)
94 2krk_A 26S protease regulatory 99.3 3.9E-12 1.3E-16 101.3 6.8 78 365-454 7-84 (86)
95 3kw6_A 26S protease regulatory 99.3 7.9E-12 2.7E-16 97.7 7.8 75 367-453 1-75 (78)
96 2ymb_A MITD1, MIT domain-conta 99.1 3.7E-12 1.3E-16 120.2 0.0 72 53-124 19-90 (257)
97 2dzn_B 26S protease regulatory 99.1 3.1E-11 1E-15 95.3 1.8 80 372-463 1-81 (82)
98 3ec2_A DNA replication protein 99.0 5.9E-10 2E-14 100.8 10.1 126 208-351 2-145 (180)
99 3f8t_A Predicted ATPase involv 99.0 5.6E-09 1.9E-13 107.2 16.7 209 218-453 215-485 (506)
100 4akg_A Glutathione S-transfera 99.0 6.4E-10 2.2E-14 135.3 10.8 134 249-384 1267-1433(2695)
101 1ny5_A Transcriptional regulat 99.0 6.4E-09 2.2E-13 105.9 14.7 201 215-448 136-384 (387)
102 3cmw_A Protein RECA, recombina 98.9 1.1E-09 3.6E-14 128.2 8.1 136 211-349 1015-1218(1706)
103 2w58_A DNAI, primosome compone 98.8 1E-08 3.6E-13 94.2 9.3 93 209-309 18-127 (202)
104 3dzd_A Transcriptional regulat 98.8 6.4E-08 2.2E-12 97.8 14.9 187 216-420 129-361 (368)
105 2kjq_A DNAA-related protein; s 98.7 5.3E-08 1.8E-12 85.5 10.8 106 249-367 36-146 (149)
106 2qen_A Walker-type ATPase; unk 98.7 2E-07 6.9E-12 92.3 16.1 182 210-414 6-247 (350)
107 2fna_A Conserved hypothetical 98.7 2.3E-07 8E-12 92.0 15.7 178 209-414 6-251 (357)
108 1tue_A Replication protein E1; 98.7 8.9E-08 3E-12 88.0 10.8 108 249-367 58-177 (212)
109 2qgz_A Helicase loader, putati 98.6 7.8E-08 2.7E-12 94.8 8.2 90 211-309 119-226 (308)
110 1jr3_D DNA polymerase III, del 98.5 4.4E-07 1.5E-11 90.5 12.2 156 249-418 18-190 (343)
111 1u0j_A DNA replication protein 98.5 3.9E-07 1.3E-11 87.3 8.8 27 249-275 104-130 (267)
112 3vkg_A Dynein heavy chain, cyt 98.3 2.5E-06 8.5E-11 105.0 14.3 133 249-383 1304-1470(3245)
113 2r2a_A Uncharacterized protein 98.3 4.7E-07 1.6E-11 83.4 5.1 116 250-373 6-157 (199)
114 4akg_A Glutathione S-transfera 98.3 2.8E-06 9.6E-11 103.8 12.4 164 249-417 645-837 (2695)
115 1svm_A Large T antigen; AAA+ f 98.2 6.7E-07 2.3E-11 90.4 4.5 113 246-368 166-284 (377)
116 2vhj_A Ntpase P4, P4; non- hyd 98.2 9.8E-07 3.4E-11 86.7 4.6 104 249-356 123-242 (331)
117 3vkg_A Dynein heavy chain, cyt 97.8 6.1E-05 2.1E-09 93.0 12.0 129 250-379 605-750 (3245)
118 2ze6_A Isopentenyl transferase 97.8 0.00015 5.1E-09 69.0 11.9 32 251-282 3-34 (253)
119 1qhx_A CPT, protein (chloramph 97.7 2E-05 6.8E-10 70.3 4.3 38 249-286 3-40 (178)
120 3trf_A Shikimate kinase, SK; a 97.7 2.2E-05 7.6E-10 70.5 4.0 33 249-281 5-37 (185)
121 1g41_A Heat shock protein HSLU 97.6 0.00034 1.2E-08 71.8 12.5 159 298-464 251-443 (444)
122 3crm_A TRNA delta(2)-isopenten 97.6 0.00012 4.2E-09 72.1 8.5 35 250-284 6-40 (323)
123 3upu_A ATP-dependent DNA helic 97.6 0.00024 8.4E-09 73.5 10.8 56 205-273 13-69 (459)
124 3vaa_A Shikimate kinase, SK; s 97.6 4E-05 1.4E-09 70.0 4.1 34 248-281 24-57 (199)
125 3cmu_A Protein RECA, recombina 97.5 0.00016 5.3E-09 86.2 8.5 97 247-345 1425-1560(2050)
126 3kb2_A SPBC2 prophage-derived 97.5 6.6E-05 2.3E-09 66.2 4.2 31 251-281 3-33 (173)
127 3iij_A Coilin-interacting nucl 97.5 6.4E-05 2.2E-09 67.2 4.1 32 249-280 11-42 (180)
128 1z6t_A APAF-1, apoptotic prote 97.5 0.0021 7.1E-08 68.4 16.4 50 212-271 120-169 (591)
129 2iyv_A Shikimate kinase, SK; t 97.5 6.5E-05 2.2E-09 67.4 3.8 31 251-281 4-34 (184)
130 1via_A Shikimate kinase; struc 97.5 6.1E-05 2.1E-09 67.1 3.5 30 251-280 6-35 (175)
131 2rhm_A Putative kinase; P-loop 97.4 0.00011 3.8E-09 66.1 5.0 32 249-280 5-36 (193)
132 1y63_A LMAJ004144AAA protein; 97.4 8E-05 2.7E-09 67.1 3.7 33 249-281 10-43 (184)
133 1zuh_A Shikimate kinase; alpha 97.4 8.6E-05 2.9E-09 65.6 3.8 31 250-280 8-38 (168)
134 1kag_A SKI, shikimate kinase I 97.4 0.00013 4.3E-09 64.6 4.8 30 250-279 5-34 (173)
135 1gvn_B Zeta; postsegregational 97.4 0.00022 7.5E-09 69.2 6.9 38 248-285 32-69 (287)
136 2cdn_A Adenylate kinase; phosp 97.4 0.00011 3.9E-09 66.9 4.3 32 249-280 20-51 (201)
137 1tev_A UMP-CMP kinase; ploop, 97.4 0.0001 3.6E-09 66.2 3.8 32 249-280 3-34 (196)
138 3a8t_A Adenylate isopentenyltr 97.3 0.0004 1.4E-08 68.7 8.0 35 250-284 41-75 (339)
139 2c95_A Adenylate kinase 1; tra 97.3 0.00011 3.9E-09 66.2 3.9 33 249-281 9-41 (196)
140 1aky_A Adenylate kinase; ATP:A 97.3 0.00012 4.1E-09 67.8 4.1 32 249-280 4-35 (220)
141 3lw7_A Adenylate kinase relate 97.3 0.0001 3.6E-09 64.8 3.5 29 251-280 3-31 (179)
142 1e6c_A Shikimate kinase; phosp 97.3 0.00012 4E-09 64.8 3.5 31 250-280 3-33 (173)
143 3t61_A Gluconokinase; PSI-biol 97.3 0.00018 6.1E-09 65.6 4.6 31 249-279 18-48 (202)
144 3dl0_A Adenylate kinase; phosp 97.3 0.00014 4.9E-09 67.0 3.7 30 251-280 2-31 (216)
145 2p5t_B PEZT; postsegregational 97.3 0.00028 9.6E-09 67.0 5.8 38 248-285 31-68 (253)
146 2bwj_A Adenylate kinase 5; pho 97.2 0.00015 5.2E-09 65.5 3.6 32 249-280 12-43 (199)
147 1zp6_A Hypothetical protein AT 97.2 0.00017 5.9E-09 64.9 3.9 37 249-285 9-45 (191)
148 1ly1_A Polynucleotide kinase; 97.2 0.00016 5.3E-09 64.2 3.6 29 250-278 3-32 (181)
149 3fb4_A Adenylate kinase; psych 97.2 0.00016 5.3E-09 66.6 3.6 30 251-280 2-31 (216)
150 3cm0_A Adenylate kinase; ATP-b 97.2 0.00018 6.2E-09 64.4 4.0 30 250-279 5-34 (186)
151 1zd8_A GTP:AMP phosphotransfer 97.2 0.00016 5.5E-09 67.3 3.7 32 249-280 7-38 (227)
152 3eph_A TRNA isopentenyltransfe 97.2 0.00069 2.4E-08 68.5 8.5 34 249-282 2-35 (409)
153 1qf9_A UMP/CMP kinase, protein 97.2 0.00017 5.7E-09 64.8 3.6 32 249-280 6-37 (194)
154 1kht_A Adenylate kinase; phosp 97.2 0.00014 4.9E-09 65.1 3.2 30 250-279 4-38 (192)
155 3tlx_A Adenylate kinase 2; str 97.2 0.00019 6.4E-09 67.8 4.1 33 248-280 28-60 (243)
156 2pt5_A Shikimate kinase, SK; a 97.2 0.00018 6.1E-09 63.3 3.6 30 251-280 2-31 (168)
157 1ak2_A Adenylate kinase isoenz 97.2 0.00021 7.1E-09 66.9 4.2 32 249-280 16-47 (233)
158 2vli_A Antibiotic resistance p 97.2 0.00017 5.7E-09 64.4 3.4 30 249-278 5-34 (183)
159 3umf_A Adenylate kinase; rossm 97.2 0.00023 7.7E-09 66.2 4.3 38 248-287 28-65 (217)
160 3foz_A TRNA delta(2)-isopenten 97.2 0.00084 2.9E-08 65.5 8.5 37 249-285 10-46 (316)
161 1knq_A Gluconate kinase; ALFA/ 97.2 0.00032 1.1E-08 62.2 5.2 31 249-279 8-38 (175)
162 1ukz_A Uridylate kinase; trans 97.2 0.00022 7.4E-09 65.0 4.1 33 249-281 15-47 (203)
163 2r8r_A Sensor protein; KDPD, P 97.2 0.0049 1.7E-07 57.4 13.3 155 250-422 7-210 (228)
164 3sr0_A Adenylate kinase; phosp 97.2 0.00026 9E-09 65.2 4.4 34 251-286 2-35 (206)
165 4eun_A Thermoresistant glucoki 97.1 0.00035 1.2E-08 63.7 4.9 30 249-278 29-58 (200)
166 3be4_A Adenylate kinase; malar 97.1 0.0002 6.8E-09 66.3 3.2 31 250-280 6-36 (217)
167 1zak_A Adenylate kinase; ATP:A 97.1 0.00017 5.8E-09 66.9 2.7 31 249-279 5-35 (222)
168 2ga8_A Hypothetical 39.9 kDa p 97.1 0.00016 5.4E-09 72.0 2.5 53 219-279 2-54 (359)
169 3sfz_A APAF-1, apoptotic pepti 97.1 0.0024 8.2E-08 73.5 12.3 168 211-413 119-328 (1249)
170 3zvl_A Bifunctional polynucleo 97.1 0.00095 3.3E-08 68.2 8.0 32 248-279 257-288 (416)
171 1e4v_A Adenylate kinase; trans 97.1 0.00027 9.2E-09 65.1 3.4 30 251-280 2-31 (214)
172 2bbw_A Adenylate kinase 4, AK4 97.0 0.00042 1.4E-08 65.3 4.5 31 249-279 27-57 (246)
173 3exa_A TRNA delta(2)-isopenten 97.0 0.0012 4E-08 64.6 7.6 34 250-283 4-37 (322)
174 2pbr_A DTMP kinase, thymidylat 97.0 0.00053 1.8E-08 61.5 4.8 31 251-281 2-35 (195)
175 2pez_A Bifunctional 3'-phospho 97.0 0.00064 2.2E-08 60.6 5.2 35 249-283 5-42 (179)
176 3a4m_A L-seryl-tRNA(SEC) kinas 97.0 0.0005 1.7E-08 65.5 4.5 36 249-284 4-42 (260)
177 2v54_A DTMP kinase, thymidylat 97.0 0.00062 2.1E-08 61.8 4.8 33 249-281 4-37 (204)
178 2a5y_B CED-4; apoptosis; HET: 97.0 0.015 5.1E-07 61.4 16.1 44 219-271 131-174 (549)
179 2xb4_A Adenylate kinase; ATP-b 96.9 0.00053 1.8E-08 63.7 4.3 30 251-280 2-31 (223)
180 2jaq_A Deoxyguanosine kinase; 96.9 0.00051 1.7E-08 62.2 4.1 28 251-278 2-29 (205)
181 2orw_A Thymidine kinase; TMTK, 96.9 0.0022 7.4E-08 57.9 8.1 31 250-280 4-37 (184)
182 1nks_A Adenylate kinase; therm 96.9 0.00033 1.1E-08 62.7 2.6 24 251-274 3-26 (194)
183 1cke_A CK, MSSA, protein (cyti 96.9 0.00065 2.2E-08 62.8 4.6 30 250-279 6-35 (227)
184 3uie_A Adenylyl-sulfate kinase 96.9 0.00067 2.3E-08 61.8 4.5 35 248-282 24-61 (200)
185 3e1s_A Exodeoxyribonuclease V, 96.9 0.0033 1.1E-07 66.9 10.3 32 250-281 205-239 (574)
186 2if2_A Dephospho-COA kinase; a 96.9 0.00048 1.6E-08 62.7 3.3 30 251-281 3-32 (204)
187 2z0h_A DTMP kinase, thymidylat 96.9 0.0008 2.7E-08 60.6 4.7 31 252-282 3-36 (197)
188 3r20_A Cytidylate kinase; stru 96.8 0.00086 2.9E-08 63.0 4.7 32 249-280 9-40 (233)
189 3nwj_A ATSK2; P loop, shikimat 96.8 0.00095 3.3E-08 63.4 4.7 31 250-280 49-79 (250)
190 2c9o_A RUVB-like 1; hexameric 96.8 1.5E-05 5.1E-10 82.7 -8.7 81 325-415 176-262 (456)
191 2grj_A Dephospho-COA kinase; T 96.8 0.00072 2.5E-08 61.5 3.6 31 251-281 14-44 (192)
192 3ake_A Cytidylate kinase; CMP 96.8 0.00095 3.3E-08 60.6 4.4 31 251-281 4-34 (208)
193 2plr_A DTMP kinase, probable t 96.7 0.00087 3E-08 61.0 4.0 28 249-276 4-31 (213)
194 1jjv_A Dephospho-COA kinase; P 96.7 0.00085 2.9E-08 61.2 3.8 29 251-280 4-32 (206)
195 2wwf_A Thymidilate kinase, put 96.7 0.00042 1.4E-08 63.3 1.6 29 249-277 10-38 (212)
196 1uf9_A TT1252 protein; P-loop, 96.7 0.0009 3.1E-08 60.5 3.8 32 249-281 8-39 (203)
197 3hr8_A Protein RECA; alpha and 96.7 0.0041 1.4E-07 62.0 8.6 37 248-284 60-99 (356)
198 1nn5_A Similar to deoxythymidy 96.7 0.00051 1.8E-08 62.8 1.9 27 249-275 9-35 (215)
199 4e22_A Cytidylate kinase; P-lo 96.6 0.0017 6E-08 61.4 5.2 31 249-279 27-57 (252)
200 2qor_A Guanylate kinase; phosp 96.6 0.0013 4.5E-08 60.0 3.8 27 248-274 11-37 (204)
201 1ye8_A Protein THEP1, hypothet 96.6 0.0016 5.6E-08 58.3 4.3 28 251-278 2-29 (178)
202 4i1u_A Dephospho-COA kinase; s 96.5 0.0045 1.5E-07 57.0 7.0 31 250-281 10-40 (210)
203 2cvh_A DNA repair and recombin 96.5 0.0031 1.1E-07 57.6 6.0 38 247-284 18-55 (220)
204 1q3t_A Cytidylate kinase; nucl 96.5 0.0022 7.5E-08 59.9 5.0 32 249-280 16-47 (236)
205 1xp8_A RECA protein, recombina 96.5 0.009 3.1E-07 59.8 9.8 36 248-283 73-111 (366)
206 2bdt_A BH3686; alpha-beta prot 96.5 0.0017 5.9E-08 58.2 4.1 25 251-275 4-28 (189)
207 2h92_A Cytidylate kinase; ross 96.5 0.0021 7E-08 59.1 4.6 32 250-281 4-35 (219)
208 1ltq_A Polynucleotide kinase; 96.5 0.0011 3.7E-08 64.2 2.8 29 250-278 3-32 (301)
209 1vht_A Dephospho-COA kinase; s 96.5 0.0023 8E-08 58.8 4.9 30 250-280 5-34 (218)
210 1uj2_A Uridine-cytidine kinase 96.4 0.0019 6.4E-08 61.1 4.2 28 249-276 22-49 (252)
211 2qt1_A Nicotinamide riboside k 96.4 0.0014 4.7E-08 59.8 3.1 32 249-280 21-53 (207)
212 3d3q_A TRNA delta(2)-isopenten 96.4 0.0019 6.3E-08 64.0 3.9 34 250-283 8-41 (340)
213 2f6r_A COA synthase, bifunctio 96.4 0.0018 6E-08 62.5 3.6 31 249-280 75-105 (281)
214 2yvu_A Probable adenylyl-sulfa 96.4 0.0022 7.4E-08 57.4 4.0 34 248-281 12-48 (186)
215 2fz4_A DNA repair protein RAD2 96.4 0.011 3.7E-07 55.4 8.8 39 251-289 110-149 (237)
216 2j41_A Guanylate kinase; GMP, 96.3 0.0021 7.2E-08 58.2 3.7 25 249-273 6-30 (207)
217 3tau_A Guanylate kinase, GMP k 96.3 0.0023 7.7E-08 58.7 3.7 28 248-275 7-34 (208)
218 1ex7_A Guanylate kinase; subst 96.3 0.0028 9.4E-08 57.3 4.2 28 250-277 2-29 (186)
219 1kgd_A CASK, peripheral plasma 96.3 0.0026 8.8E-08 56.9 3.9 25 250-274 6-30 (180)
220 1m7g_A Adenylylsulfate kinase; 96.3 0.0031 1.1E-07 57.8 4.5 34 249-282 25-62 (211)
221 2qmh_A HPR kinase/phosphorylas 96.3 0.002 7E-08 58.7 3.2 33 249-282 34-66 (205)
222 2axn_A 6-phosphofructo-2-kinas 96.2 0.0033 1.1E-07 66.1 4.9 37 249-285 35-74 (520)
223 3cmu_A Protein RECA, recombina 96.2 0.0048 1.6E-07 73.7 6.7 41 246-286 1078-1121(2050)
224 2iut_A DNA translocase FTSK; n 96.2 0.028 9.5E-07 59.3 11.7 42 338-379 377-420 (574)
225 4b3f_X DNA-binding protein smu 96.2 0.0097 3.3E-07 64.2 8.5 57 213-283 183-242 (646)
226 3tr0_A Guanylate kinase, GMP k 96.2 0.0034 1.1E-07 56.8 4.1 26 249-274 7-32 (205)
227 3dm5_A SRP54, signal recogniti 96.2 0.0084 2.9E-07 61.5 7.4 36 248-283 99-137 (443)
228 1n0w_A DNA repair protein RAD5 96.1 0.0045 1.6E-07 57.4 5.0 37 248-284 23-68 (243)
229 3fdi_A Uncharacterized protein 96.1 0.004 1.4E-07 56.9 4.0 29 251-279 8-36 (201)
230 3asz_A Uridine kinase; cytidin 96.0 0.0037 1.3E-07 57.0 3.7 26 249-274 6-31 (211)
231 3a00_A Guanylate kinase, GMP k 96.0 0.0042 1.4E-07 55.7 3.6 25 250-274 2-26 (186)
232 2ius_A DNA translocase FTSK; n 95.9 0.021 7.3E-07 59.5 9.4 42 339-380 332-375 (512)
233 2w0m_A SSO2452; RECA, SSPF, un 95.9 0.0043 1.5E-07 57.0 3.7 35 248-282 22-59 (235)
234 1rz3_A Hypothetical protein rb 95.9 0.0071 2.4E-07 54.9 5.1 33 249-281 22-57 (201)
235 3c8u_A Fructokinase; YP_612366 95.9 0.0042 1.4E-07 56.8 3.5 26 249-274 22-47 (208)
236 1lvg_A Guanylate kinase, GMP k 95.9 0.0041 1.4E-07 56.5 3.4 26 249-274 4-29 (198)
237 2dr3_A UPF0273 protein PH0284; 95.9 0.007 2.4E-07 56.2 5.0 38 247-284 21-61 (247)
238 1vma_A Cell division protein F 95.9 0.011 3.7E-07 57.7 6.4 37 247-283 102-141 (306)
239 2z43_A DNA repair and recombin 95.9 0.0071 2.4E-07 59.5 5.1 37 248-284 106-151 (324)
240 3ney_A 55 kDa erythrocyte memb 95.8 0.0074 2.5E-07 55.0 4.6 26 249-274 19-44 (197)
241 3gmt_A Adenylate kinase; ssgci 95.8 0.0056 1.9E-07 57.2 3.8 30 251-280 10-39 (230)
242 2ehv_A Hypothetical protein PH 95.8 0.005 1.7E-07 57.4 3.5 23 248-270 29-51 (251)
243 2xze_A STAM-binding protein; h 95.8 0.071 2.4E-06 46.0 10.5 77 50-126 33-115 (146)
244 4a74_A DNA repair and recombin 95.8 0.0048 1.6E-07 56.7 3.3 27 247-273 23-49 (231)
245 4eaq_A DTMP kinase, thymidylat 95.8 0.007 2.4E-07 56.4 4.4 31 249-279 26-58 (229)
246 1gtv_A TMK, thymidylate kinase 95.8 0.0025 8.5E-08 58.1 1.2 25 251-275 2-26 (214)
247 1x6v_B Bifunctional 3'-phospho 95.7 0.0083 2.9E-07 64.1 5.3 34 249-282 52-88 (630)
248 1v5w_A DMC1, meiotic recombina 95.7 0.012 4.1E-07 58.4 6.0 38 247-284 120-166 (343)
249 2px0_A Flagellar biosynthesis 95.7 0.013 4.4E-07 56.9 6.1 61 222-283 79-143 (296)
250 3kl4_A SRP54, signal recogniti 95.7 0.015 5E-07 59.6 6.7 35 248-282 96-133 (433)
251 4gp7_A Metallophosphoesterase; 95.6 0.0061 2.1E-07 53.9 3.2 22 249-270 9-30 (171)
252 3b9q_A Chloroplast SRP recepto 95.6 0.015 5E-07 56.7 6.2 52 222-273 70-124 (302)
253 1pzn_A RAD51, DNA repair and r 95.5 0.011 3.7E-07 58.9 5.1 38 247-284 129-175 (349)
254 1z6g_A Guanylate kinase; struc 95.5 0.0085 2.9E-07 55.3 3.8 25 249-273 23-47 (218)
255 1znw_A Guanylate kinase, GMP k 95.5 0.0092 3.2E-07 54.4 3.9 26 249-274 20-45 (207)
256 3tqf_A HPR(Ser) kinase; transf 95.5 0.011 3.7E-07 52.6 4.2 29 249-278 16-44 (181)
257 2zts_A Putative uncharacterize 95.5 0.014 4.7E-07 54.2 5.3 37 247-283 28-68 (251)
258 1htw_A HI0065; nucleotide-bind 95.5 0.0098 3.4E-07 52.1 3.9 25 249-273 33-57 (158)
259 2zr9_A Protein RECA, recombina 95.5 0.011 3.8E-07 58.7 4.8 36 248-283 60-98 (349)
260 3hdt_A Putative kinase; struct 95.5 0.0089 3.1E-07 55.6 3.9 30 250-279 15-44 (223)
261 1u94_A RECA protein, recombina 95.4 0.013 4.3E-07 58.5 5.1 36 248-283 62-100 (356)
262 1rj9_A FTSY, signal recognitio 95.4 0.015 5E-07 56.8 5.4 26 248-273 101-126 (304)
263 1zu4_A FTSY; GTPase, signal re 95.4 0.028 9.7E-07 55.1 7.5 37 247-283 103-142 (320)
264 1odf_A YGR205W, hypothetical 3 95.3 0.023 8E-07 54.9 6.5 27 248-274 30-56 (290)
265 3io5_A Recombination and repai 95.3 0.013 4.6E-07 57.2 4.7 34 251-284 30-68 (333)
266 1s96_A Guanylate kinase, GMP k 95.3 0.011 3.8E-07 54.8 3.9 27 248-274 15-41 (219)
267 2og2_A Putative signal recogni 95.3 0.021 7.2E-07 57.0 6.1 53 221-273 126-181 (359)
268 1p9r_A General secretion pathw 95.3 0.025 8.7E-07 57.6 6.8 50 212-274 143-192 (418)
269 1c9k_A COBU, adenosylcobinamid 95.2 0.011 3.9E-07 52.9 3.6 31 252-283 2-32 (180)
270 2v9p_A Replication protein E1; 95.1 0.013 4.3E-07 57.2 3.9 32 247-278 124-155 (305)
271 2jeo_A Uridine-cytidine kinase 95.1 0.013 4.6E-07 54.8 4.0 27 250-276 26-52 (245)
272 2i3b_A HCR-ntpase, human cance 95.1 0.011 3.9E-07 53.3 3.3 23 251-273 3-25 (189)
273 2eyu_A Twitching motility prot 95.1 0.013 4.5E-07 55.8 3.9 25 249-273 25-49 (261)
274 3e70_C DPA, signal recognition 95.1 0.02 6.9E-07 56.4 5.3 27 247-273 127-153 (328)
275 1a7j_A Phosphoribulokinase; tr 95.1 0.0076 2.6E-07 58.4 2.2 37 250-286 6-45 (290)
276 1nlf_A Regulatory protein REPA 95.0 0.013 4.4E-07 56.1 3.6 25 249-273 30-54 (279)
277 2gk6_A Regulator of nonsense t 95.0 0.021 7.2E-07 61.3 5.5 48 221-283 182-233 (624)
278 2ocp_A DGK, deoxyguanosine kin 95.0 0.018 6.1E-07 53.8 4.3 26 249-274 2-27 (241)
279 1cr0_A DNA primase/helicase; R 95.0 0.014 4.9E-07 56.2 3.7 35 248-282 34-72 (296)
280 2i1q_A DNA repair and recombin 94.9 0.019 6.4E-07 56.2 4.5 25 248-272 97-121 (322)
281 3lnc_A Guanylate kinase, GMP k 94.9 0.01 3.4E-07 55.1 2.4 26 249-274 27-53 (231)
282 3cmw_A Protein RECA, recombina 94.9 0.035 1.2E-06 65.5 7.4 38 247-284 730-770 (1706)
283 1m8p_A Sulfate adenylyltransfe 94.9 0.019 6.4E-07 61.0 4.7 36 249-284 396-435 (573)
284 1p5z_B DCK, deoxycytidine kina 94.9 0.008 2.7E-07 57.0 1.6 26 249-274 24-49 (263)
285 1sq5_A Pantothenate kinase; P- 94.8 0.017 5.7E-07 56.3 3.7 26 249-274 80-105 (308)
286 2ged_A SR-beta, signal recogni 94.7 0.034 1.1E-06 49.3 5.4 25 249-273 48-72 (193)
287 2crb_A Nuclear receptor bindin 94.7 0.18 6.2E-06 39.3 8.5 50 56-105 14-63 (97)
288 1x3s_A RAS-related protein RAB 94.7 0.12 4.3E-06 45.4 9.1 23 250-272 16-38 (195)
289 2b8t_A Thymidine kinase; deoxy 94.6 0.029 9.8E-07 52.1 4.7 33 249-281 12-47 (223)
290 3aez_A Pantothenate kinase; tr 94.6 0.02 6.9E-07 56.0 3.9 27 248-274 89-115 (312)
291 4dsu_A GTPase KRAS, isoform 2B 94.6 0.095 3.3E-06 45.8 8.1 23 250-272 5-27 (189)
292 1xjc_A MOBB protein homolog; s 94.6 0.022 7.6E-07 50.5 3.7 24 250-273 5-28 (169)
293 2yhs_A FTSY, cell division pro 94.6 0.027 9.1E-07 58.4 4.8 26 248-273 292-317 (503)
294 3lda_A DNA repair protein RAD5 94.6 0.03 1E-06 56.7 5.1 38 247-284 176-222 (400)
295 3jvv_A Twitching mobility prot 94.6 0.02 7E-07 57.0 3.8 24 250-273 124-147 (356)
296 3tqc_A Pantothenate kinase; bi 94.6 0.024 8.1E-07 55.7 4.2 26 249-274 92-117 (321)
297 2ewv_A Twitching motility prot 94.4 0.022 7.5E-07 57.1 3.7 26 248-273 135-160 (372)
298 2j37_W Signal recognition part 94.4 0.053 1.8E-06 56.5 6.7 35 248-282 100-137 (504)
299 1np6_A Molybdopterin-guanine d 94.4 0.028 9.5E-07 50.1 3.8 24 250-273 7-30 (174)
300 3lv8_A DTMP kinase, thymidylat 94.4 0.025 8.4E-07 53.0 3.6 25 249-273 27-51 (236)
301 2wjy_A Regulator of nonsense t 94.4 0.036 1.2E-06 61.2 5.5 48 221-283 358-409 (800)
302 3tif_A Uncharacterized ABC tra 94.3 0.022 7.6E-07 53.2 3.2 27 248-274 30-56 (235)
303 2v3c_C SRP54, signal recogniti 94.3 0.046 1.6E-06 55.9 5.8 35 248-282 98-135 (432)
304 3bh0_A DNAB-like replicative h 94.3 0.046 1.6E-06 53.4 5.5 36 247-282 66-104 (315)
305 3kta_A Chromosome segregation 94.3 0.025 8.6E-07 50.0 3.3 24 251-274 28-51 (182)
306 2cbz_A Multidrug resistance-as 94.2 0.024 8.3E-07 53.1 3.2 26 248-273 30-55 (237)
307 3b85_A Phosphate starvation-in 94.2 0.019 6.6E-07 52.6 2.4 23 250-272 23-45 (208)
308 1bif_A 6-phosphofructo-2-kinas 94.2 0.015 5.1E-07 60.2 1.8 26 249-274 39-64 (469)
309 3oes_A GTPase rhebl1; small GT 94.2 0.16 5.4E-06 45.4 8.5 23 250-272 25-47 (201)
310 2f9l_A RAB11B, member RAS onco 94.1 0.026 9E-07 50.6 3.3 22 251-272 7-28 (199)
311 4edh_A DTMP kinase, thymidylat 94.1 0.032 1.1E-06 51.4 3.8 33 249-281 6-41 (213)
312 2pcj_A ABC transporter, lipopr 94.1 0.023 7.8E-07 52.7 2.8 25 249-273 30-54 (224)
313 2onk_A Molybdate/tungstate ABC 94.1 0.029 1E-06 52.6 3.6 25 250-274 25-49 (240)
314 3tmk_A Thymidylate kinase; pho 94.1 0.048 1.6E-06 50.3 5.0 30 249-278 5-34 (216)
315 1nrj_B SR-beta, signal recogni 94.1 0.034 1.2E-06 50.4 3.9 25 249-273 12-36 (218)
316 1oix_A RAS-related protein RAB 94.1 0.026 8.9E-07 50.4 3.0 23 251-273 31-53 (191)
317 1w36_D RECD, exodeoxyribonucle 94.0 0.036 1.2E-06 59.3 4.5 24 250-273 165-188 (608)
318 1g8f_A Sulfate adenylyltransfe 94.0 0.026 9E-07 58.9 3.3 26 250-275 396-421 (511)
319 1b0u_A Histidine permease; ABC 93.9 0.029 1E-06 53.3 3.2 26 249-274 32-57 (262)
320 3cr8_A Sulfate adenylyltranfer 93.9 0.021 7.4E-07 60.2 2.4 26 249-274 369-394 (552)
321 3v9p_A DTMP kinase, thymidylat 93.9 0.031 1.1E-06 52.0 3.2 25 249-273 25-49 (227)
322 2dyk_A GTP-binding protein; GT 93.9 0.034 1.1E-06 47.4 3.3 22 251-272 3-24 (161)
323 1lw7_A Transcriptional regulat 93.8 0.032 1.1E-06 55.6 3.5 28 249-276 170-197 (365)
324 1mv5_A LMRA, multidrug resista 93.8 0.031 1E-06 52.5 3.1 26 248-273 27-52 (243)
325 1z2a_A RAS-related protein RAB 93.8 0.036 1.2E-06 47.5 3.3 23 250-272 6-28 (168)
326 2xzl_A ATP-dependent helicase 93.8 0.053 1.8E-06 59.9 5.3 33 251-283 377-413 (802)
327 3sop_A Neuronal-specific septi 93.8 0.032 1.1E-06 53.4 3.2 23 251-273 4-26 (270)
328 3fvq_A Fe(3+) IONS import ATP- 93.7 0.036 1.2E-06 55.2 3.5 24 250-273 31-54 (359)
329 1sgw_A Putative ABC transporte 93.7 0.031 1.1E-06 51.5 2.9 26 249-274 35-60 (214)
330 2zu0_C Probable ATP-dependent 93.7 0.04 1.4E-06 52.6 3.7 24 249-272 46-69 (267)
331 2d2e_A SUFC protein; ABC-ATPas 93.7 0.039 1.3E-06 52.0 3.6 24 249-272 29-52 (250)
332 2ghi_A Transport protein; mult 93.7 0.034 1.2E-06 52.8 3.2 26 248-273 45-70 (260)
333 2f1r_A Molybdopterin-guanine d 93.6 0.023 7.8E-07 50.5 1.8 25 250-274 3-27 (171)
334 1kao_A RAP2A; GTP-binding prot 93.6 0.039 1.3E-06 47.1 3.3 23 250-272 4-26 (167)
335 1g6h_A High-affinity branched- 93.6 0.034 1.2E-06 52.7 3.1 26 249-274 33-58 (257)
336 2olj_A Amino acid ABC transpor 93.6 0.035 1.2E-06 52.8 3.2 26 249-274 50-75 (263)
337 3ld9_A DTMP kinase, thymidylat 93.6 0.047 1.6E-06 50.7 3.9 27 249-275 21-47 (223)
338 2ffh_A Protein (FFH); SRP54, s 93.6 0.11 3.8E-06 52.8 7.1 35 248-282 97-134 (425)
339 2ce2_X GTPase HRAS; signaling 93.6 0.037 1.3E-06 47.1 3.1 22 251-272 5-26 (166)
340 2ixe_A Antigen peptide transpo 93.6 0.036 1.2E-06 53.0 3.2 26 249-274 45-70 (271)
341 2oap_1 GSPE-2, type II secreti 93.6 0.028 9.7E-07 58.8 2.6 34 249-282 260-295 (511)
342 2pze_A Cystic fibrosis transme 93.6 0.035 1.2E-06 51.6 3.0 26 249-274 34-59 (229)
343 2q6t_A DNAB replication FORK h 93.5 0.072 2.5E-06 54.6 5.6 38 246-283 197-238 (444)
344 2wji_A Ferrous iron transport 93.5 0.039 1.3E-06 47.8 3.1 23 250-272 4-26 (165)
345 1j8m_F SRP54, signal recogniti 93.5 0.1 3.5E-06 50.5 6.4 35 249-283 98-135 (297)
346 2gza_A Type IV secretion syste 93.5 0.033 1.1E-06 55.6 2.9 26 249-274 175-200 (361)
347 1ji0_A ABC transporter; ATP bi 93.5 0.037 1.2E-06 51.9 3.1 26 249-274 32-57 (240)
348 2ff7_A Alpha-hemolysin translo 93.5 0.036 1.2E-06 52.2 3.1 26 249-274 35-60 (247)
349 2r6a_A DNAB helicase, replicat 93.5 0.075 2.6E-06 54.6 5.7 36 247-282 201-240 (454)
350 2zej_A Dardarin, leucine-rich 93.5 0.033 1.1E-06 49.3 2.6 21 251-271 4-24 (184)
351 1ek0_A Protein (GTP-binding pr 93.5 0.043 1.5E-06 47.1 3.3 23 250-272 4-26 (170)
352 1z47_A CYSA, putative ABC-tran 93.5 0.036 1.2E-06 55.1 3.1 25 250-274 42-66 (355)
353 2yyz_A Sugar ABC transporter, 93.5 0.044 1.5E-06 54.6 3.7 26 249-274 29-54 (359)
354 2it1_A 362AA long hypothetical 93.4 0.044 1.5E-06 54.7 3.7 26 249-274 29-54 (362)
355 1u8z_A RAS-related protein RAL 93.4 0.044 1.5E-06 46.8 3.3 23 250-272 5-27 (168)
356 3gfo_A Cobalt import ATP-bindi 93.4 0.037 1.3E-06 53.0 3.0 26 249-274 34-59 (275)
357 2qi9_C Vitamin B12 import ATP- 93.4 0.038 1.3E-06 52.1 3.0 26 249-274 26-51 (249)
358 1vpl_A ABC transporter, ATP-bi 93.4 0.04 1.4E-06 52.2 3.2 26 249-274 41-66 (256)
359 3rlf_A Maltose/maltodextrin im 93.4 0.045 1.6E-06 54.9 3.7 26 249-274 29-54 (381)
360 2yz2_A Putative ABC transporte 93.4 0.041 1.4E-06 52.4 3.2 26 249-274 33-58 (266)
361 4g1u_C Hemin import ATP-bindin 93.4 0.039 1.3E-06 52.6 3.0 25 249-273 37-61 (266)
362 1z0j_A RAB-22, RAS-related pro 93.4 0.046 1.6E-06 47.0 3.3 24 250-273 7-30 (170)
363 2nzj_A GTP-binding protein REM 93.3 0.043 1.5E-06 47.5 3.1 23 250-272 5-27 (175)
364 1wms_A RAB-9, RAB9, RAS-relate 93.3 0.046 1.6E-06 47.5 3.3 23 250-272 8-30 (177)
365 1v43_A Sugar-binding transport 93.3 0.047 1.6E-06 54.7 3.7 26 249-274 37-62 (372)
366 2wsm_A Hydrogenase expression/ 93.3 0.042 1.4E-06 50.0 3.1 25 250-274 31-55 (221)
367 1z08_A RAS-related protein RAB 93.3 0.048 1.6E-06 46.9 3.3 23 250-272 7-29 (170)
368 1q57_A DNA primase/helicase; d 93.3 0.077 2.6E-06 55.3 5.4 37 247-283 240-280 (503)
369 1ky3_A GTP-binding protein YPT 93.3 0.048 1.6E-06 47.4 3.3 24 249-272 8-31 (182)
370 1g16_A RAS-related protein SEC 93.2 0.046 1.6E-06 47.0 3.1 23 250-272 4-26 (170)
371 3d31_A Sulfate/molybdate ABC t 93.2 0.039 1.3E-06 54.7 2.9 26 249-274 26-51 (348)
372 2a9u_A Ubiquitin carboxyl-term 93.2 0.38 1.3E-05 41.2 8.6 79 49-127 34-117 (144)
373 2ihy_A ABC transporter, ATP-bi 93.2 0.043 1.5E-06 52.7 3.0 26 249-274 47-72 (279)
374 2lkc_A Translation initiation 93.2 0.068 2.3E-06 46.4 4.1 23 249-271 8-30 (178)
375 2xxa_A Signal recognition part 93.2 0.12 4E-06 52.9 6.5 37 247-283 98-138 (433)
376 1g29_1 MALK, maltose transport 93.2 0.05 1.7E-06 54.5 3.6 24 250-273 30-53 (372)
377 1r2q_A RAS-related protein RAB 93.1 0.052 1.8E-06 46.5 3.3 23 250-272 7-29 (170)
378 2nq2_C Hypothetical ABC transp 93.1 0.044 1.5E-06 51.8 3.0 26 249-274 31-56 (253)
379 1c1y_A RAS-related protein RAP 93.1 0.053 1.8E-06 46.4 3.3 23 250-272 4-26 (167)
380 4a1f_A DNAB helicase, replicat 93.1 0.1 3.5E-06 51.5 5.6 36 247-282 44-82 (338)
381 3q85_A GTP-binding protein REM 93.1 0.05 1.7E-06 46.8 3.1 21 251-271 4-24 (169)
382 4tmk_A Protein (thymidylate ki 93.1 0.048 1.7E-06 50.1 3.1 24 250-273 4-27 (213)
383 3bc1_A RAS-related protein RAB 93.1 0.053 1.8E-06 47.6 3.3 23 250-272 12-34 (195)
384 2erx_A GTP-binding protein DI- 93.0 0.051 1.8E-06 46.7 3.1 22 250-271 4-25 (172)
385 1r8s_A ADP-ribosylation factor 93.0 0.056 1.9E-06 46.2 3.3 22 251-272 2-23 (164)
386 1upt_A ARL1, ADP-ribosylation 93.0 0.07 2.4E-06 45.9 3.9 24 249-272 7-30 (171)
387 2gj8_A MNME, tRNA modification 93.0 0.054 1.9E-06 47.4 3.2 24 249-272 4-27 (172)
388 2pt7_A CAG-ALFA; ATPase, prote 92.9 0.03 1E-06 55.2 1.5 25 250-274 172-196 (330)
389 2wjg_A FEOB, ferrous iron tran 92.9 0.054 1.8E-06 47.7 3.1 23 250-272 8-30 (188)
390 3q72_A GTP-binding protein RAD 92.9 0.048 1.6E-06 46.8 2.7 21 251-271 4-24 (166)
391 2vp4_A Deoxynucleoside kinase; 92.9 0.059 2E-06 49.8 3.5 29 249-278 20-48 (230)
392 2y8e_A RAB-protein 6, GH09086P 92.9 0.055 1.9E-06 46.9 3.1 23 250-272 15-37 (179)
393 1vt4_I APAF-1 related killer D 92.9 0.094 3.2E-06 59.1 5.5 43 219-272 131-173 (1221)
394 2pjz_A Hypothetical protein ST 92.9 0.044 1.5E-06 52.1 2.6 25 249-273 30-54 (263)
395 4ag6_A VIRB4 ATPase, type IV s 92.8 0.1 3.4E-06 52.4 5.3 35 249-283 35-72 (392)
396 3p32_A Probable GTPase RV1496/ 92.8 0.1 3.6E-06 51.7 5.4 33 249-281 79-114 (355)
397 2hxs_A RAB-26, RAS-related pro 92.8 0.054 1.8E-06 47.1 2.9 23 250-272 7-29 (178)
398 1z0f_A RAB14, member RAS oncog 92.8 0.061 2.1E-06 46.6 3.3 23 250-272 16-38 (179)
399 2oil_A CATX-8, RAS-related pro 92.8 0.062 2.1E-06 47.6 3.3 23 250-272 26-48 (193)
400 3con_A GTPase NRAS; structural 92.8 0.062 2.1E-06 47.4 3.3 23 250-272 22-44 (190)
401 3clv_A RAB5 protein, putative; 92.8 0.061 2.1E-06 47.5 3.3 24 249-272 7-30 (208)
402 1m7b_A RND3/RHOE small GTP-bin 92.7 0.058 2E-06 47.5 3.1 23 250-272 8-30 (184)
403 2hf9_A Probable hydrogenase ni 92.7 0.091 3.1E-06 47.9 4.5 25 249-273 38-62 (226)
404 2a9k_A RAS-related protein RAL 92.7 0.064 2.2E-06 46.8 3.3 23 250-272 19-41 (187)
405 3gd7_A Fusion complex of cysti 92.7 0.061 2.1E-06 54.2 3.5 25 249-273 47-71 (390)
406 2efe_B Small GTP-binding prote 92.7 0.065 2.2E-06 46.7 3.3 23 250-272 13-35 (181)
407 1oxx_K GLCV, glucose, ABC tran 92.7 0.041 1.4E-06 54.7 2.2 25 249-273 31-55 (353)
408 2fn4_A P23, RAS-related protei 92.7 0.06 2.1E-06 46.7 3.0 23 250-272 10-32 (181)
409 3tw8_B RAS-related protein RAB 92.6 0.059 2E-06 46.8 2.9 22 250-271 10-31 (181)
410 1f2t_A RAD50 ABC-ATPase; DNA d 92.6 0.064 2.2E-06 46.2 3.1 24 250-273 24-47 (149)
411 2bme_A RAB4A, RAS-related prot 92.6 0.062 2.1E-06 47.1 3.1 23 250-272 11-33 (186)
412 1ko7_A HPR kinase/phosphatase; 92.5 0.087 3E-06 51.4 4.2 29 249-278 144-172 (314)
413 3t1o_A Gliding protein MGLA; G 92.5 0.068 2.3E-06 47.1 3.2 24 250-273 15-38 (198)
414 1ls1_A Signal recognition part 92.5 0.12 4.2E-06 49.8 5.3 35 248-282 97-134 (295)
415 2bbs_A Cystic fibrosis transme 92.5 0.06 2.1E-06 52.0 3.0 26 248-273 63-88 (290)
416 2qm8_A GTPase/ATPase; G protei 92.5 0.078 2.7E-06 52.3 3.9 25 249-273 55-79 (337)
417 3kkq_A RAS-related protein M-R 92.5 0.072 2.5E-06 46.6 3.3 24 249-272 18-41 (183)
418 1yrb_A ATP(GTP)binding protein 92.4 0.13 4.4E-06 48.1 5.2 33 249-281 14-48 (262)
419 2g6b_A RAS-related protein RAB 92.4 0.074 2.5E-06 46.2 3.3 23 250-272 11-33 (180)
420 2obl_A ESCN; ATPase, hydrolase 92.4 0.098 3.3E-06 51.9 4.5 28 250-277 72-99 (347)
421 3bgw_A DNAB-like replicative h 92.4 0.12 3.9E-06 53.1 5.1 37 247-283 195-234 (444)
422 1mh1_A RAC1; GTP-binding, GTPa 92.4 0.076 2.6E-06 46.4 3.3 23 250-272 6-28 (186)
423 2gf9_A RAS-related protein RAB 92.4 0.075 2.6E-06 46.9 3.3 23 250-272 23-45 (189)
424 3tkl_A RAS-related protein RAB 92.3 0.075 2.6E-06 47.0 3.1 23 250-272 17-39 (196)
425 1m2o_B GTP-binding protein SAR 92.2 0.073 2.5E-06 47.3 3.1 24 249-272 23-46 (190)
426 2cxx_A Probable GTP-binding pr 92.2 0.067 2.3E-06 46.9 2.8 22 251-272 3-24 (190)
427 3ihw_A Centg3; RAS, centaurin, 92.2 0.08 2.7E-06 46.9 3.3 23 250-272 21-43 (184)
428 1knx_A Probable HPR(Ser) kinas 92.2 0.088 3E-06 51.3 3.8 31 248-279 146-176 (312)
429 3bwd_D RAC-like GTP-binding pr 92.2 0.082 2.8E-06 46.0 3.3 23 250-272 9-31 (182)
430 1svi_A GTP-binding protein YSX 92.2 0.084 2.9E-06 46.7 3.4 24 249-272 23-46 (195)
431 2bov_A RAla, RAS-related prote 92.2 0.081 2.8E-06 47.2 3.3 23 250-272 15-37 (206)
432 3c5c_A RAS-like protein 12; GD 92.1 0.082 2.8E-06 46.8 3.3 23 250-272 22-44 (187)
433 3dz8_A RAS-related protein RAB 92.1 0.081 2.8E-06 46.8 3.2 24 250-273 24-47 (191)
434 2npi_A Protein CLP1; CLP1-PCF1 92.1 0.069 2.4E-06 55.0 3.1 25 249-273 138-162 (460)
435 2dpy_A FLII, flagellum-specifi 92.1 0.11 3.7E-06 53.2 4.5 27 250-276 158-184 (438)
436 1dek_A Deoxynucleoside monopho 92.1 0.078 2.7E-06 49.8 3.1 27 251-277 3-29 (241)
437 3k53_A Ferrous iron transport 92.0 0.079 2.7E-06 50.3 3.2 23 250-272 4-26 (271)
438 1pui_A ENGB, probable GTP-bind 92.0 0.039 1.3E-06 49.7 1.0 24 249-272 26-49 (210)
439 3t5g_A GTP-binding protein RHE 92.0 0.081 2.8E-06 46.1 3.1 22 250-271 7-28 (181)
440 1zd9_A ADP-ribosylation factor 92.0 0.079 2.7E-06 46.9 3.0 23 250-272 23-45 (188)
441 1vg8_A RAS-related protein RAB 92.0 0.086 2.9E-06 47.1 3.3 24 249-272 8-31 (207)
442 2fg5_A RAB-22B, RAS-related pr 92.0 0.08 2.7E-06 47.0 3.0 23 250-272 24-46 (192)
443 2a5j_A RAS-related protein RAB 92.0 0.089 3E-06 46.6 3.3 23 250-272 22-44 (191)
444 3nh6_A ATP-binding cassette SU 92.0 0.061 2.1E-06 52.4 2.3 27 248-274 79-105 (306)
445 2gks_A Bifunctional SAT/APS ki 92.0 0.083 2.8E-06 55.7 3.5 34 249-282 372-408 (546)
446 2p5s_A RAS and EF-hand domain 91.9 0.089 3.1E-06 47.0 3.3 24 249-272 28-51 (199)
447 4hlc_A DTMP kinase, thymidylat 91.9 0.16 5.4E-06 46.3 5.0 31 250-280 3-35 (205)
448 3reg_A RHO-like small GTPase; 91.9 0.09 3.1E-06 46.6 3.3 23 250-272 24-46 (194)
449 1z06_A RAS-related protein RAB 91.9 0.09 3.1E-06 46.4 3.3 23 250-272 21-43 (189)
450 2atv_A RERG, RAS-like estrogen 91.9 0.1 3.6E-06 46.3 3.7 24 249-272 28-51 (196)
451 2iwr_A Centaurin gamma 1; ANK 91.9 0.068 2.3E-06 46.5 2.4 23 250-272 8-30 (178)
452 3pqc_A Probable GTP-binding pr 91.9 0.078 2.7E-06 46.7 2.8 23 250-272 24-46 (195)
453 3cph_A RAS-related protein SEC 91.8 0.092 3.2E-06 47.1 3.3 24 249-272 20-43 (213)
454 3tui_C Methionine import ATP-b 91.8 0.099 3.4E-06 52.1 3.7 25 249-273 54-78 (366)
455 1zbd_A Rabphilin-3A; G protein 91.8 0.089 3E-06 47.0 3.1 23 250-272 9-31 (203)
456 2bcg_Y Protein YP2, GTP-bindin 91.8 0.087 3E-06 47.2 3.1 23 250-272 9-31 (206)
457 2yv5_A YJEQ protein; hydrolase 91.8 0.14 4.6E-06 49.7 4.6 23 250-273 166-188 (302)
458 1tf7_A KAIC; homohexamer, hexa 91.7 0.091 3.1E-06 55.1 3.5 26 248-273 280-305 (525)
459 1ksh_A ARF-like protein 2; sma 91.7 0.1 3.5E-06 45.8 3.4 24 249-272 18-41 (186)
460 1gwn_A RHO-related GTP-binding 91.7 0.092 3.1E-06 47.5 3.1 23 250-272 29-51 (205)
461 2rcn_A Probable GTPase ENGC; Y 91.7 0.1 3.4E-06 51.9 3.6 25 250-274 216-240 (358)
462 1xx6_A Thymidine kinase; NESG, 91.6 0.17 5.7E-06 45.6 4.7 32 250-281 9-43 (191)
463 1fzq_A ADP-ribosylation factor 91.6 0.085 2.9E-06 46.4 2.7 24 249-272 16-39 (181)
464 1moz_A ARL1, ADP-ribosylation 91.6 0.073 2.5E-06 46.5 2.3 24 248-271 17-40 (183)
465 2www_A Methylmalonic aciduria 91.6 0.11 3.8E-06 51.4 3.8 25 249-273 74-98 (349)
466 2hr2_A Hypothetical protein; a 91.6 0.35 1.2E-05 42.2 6.6 46 51-96 24-96 (159)
467 3ch4_B Pmkase, phosphomevalona 91.5 0.16 5.5E-06 46.2 4.5 41 247-287 9-50 (202)
468 2ew1_A RAS-related protein RAB 91.5 0.098 3.3E-06 47.2 3.1 23 250-272 27-49 (201)
469 1tf7_A KAIC; homohexamer, hexa 91.5 0.099 3.4E-06 54.8 3.5 21 249-269 39-59 (525)
470 2gf0_A GTP-binding protein DI- 91.5 0.13 4.3E-06 45.6 3.8 24 249-272 8-31 (199)
471 1tq4_A IIGP1, interferon-induc 91.4 0.15 5.2E-06 51.7 4.7 22 251-272 71-92 (413)
472 2fh5_B SR-beta, signal recogni 91.4 0.11 3.8E-06 46.8 3.3 23 250-272 8-30 (214)
473 3hjn_A DTMP kinase, thymidylat 91.3 0.21 7.1E-06 45.2 5.1 30 252-281 3-35 (197)
474 3lxx_A GTPase IMAP family memb 91.3 0.11 3.6E-06 48.2 3.1 23 250-272 30-52 (239)
475 2fu5_C RAS-related protein RAB 91.3 0.066 2.3E-06 46.8 1.6 23 250-272 9-31 (183)
476 2cjw_A GTP-binding protein GEM 91.2 0.13 4.3E-06 45.9 3.4 23 250-272 7-29 (192)
477 2qag_B Septin-6, protein NEDD5 91.2 0.094 3.2E-06 53.4 2.8 21 252-272 45-65 (427)
478 1f6b_A SAR1; gtpases, N-termin 91.1 0.12 4.1E-06 46.3 3.2 23 249-271 25-47 (198)
479 1zj6_A ADP-ribosylation factor 91.1 0.13 4.4E-06 45.3 3.4 23 249-271 16-38 (187)
480 1u0l_A Probable GTPase ENGC; p 91.1 0.087 3E-06 51.0 2.4 25 250-274 170-194 (301)
481 2o52_A RAS-related protein RAB 91.1 0.11 3.7E-06 46.5 2.9 22 250-271 26-47 (200)
482 2b6h_A ADP-ribosylation factor 91.0 0.15 5.2E-06 45.3 3.8 23 249-271 29-51 (192)
483 2atx_A Small GTP binding prote 91.0 0.12 4E-06 45.8 3.0 23 250-272 19-41 (194)
484 2fv8_A H6, RHO-related GTP-bin 91.0 0.12 4E-06 46.6 3.0 23 250-272 26-48 (207)
485 4bas_A ADP-ribosylation factor 91.0 0.11 3.8E-06 46.0 2.8 23 249-271 17-39 (199)
486 3b6e_A Interferon-induced heli 91.0 0.27 9.3E-06 44.0 5.5 24 250-273 49-72 (216)
487 2q3h_A RAS homolog gene family 91.0 0.12 4.2E-06 45.9 3.1 23 249-271 20-42 (201)
488 2f7s_A C25KG, RAS-related prot 90.9 0.12 4.2E-06 46.6 3.1 23 250-272 26-48 (217)
489 3cbq_A GTP-binding protein REM 90.9 0.1 3.4E-06 46.7 2.4 22 250-271 24-45 (195)
490 1e9r_A Conjugal transfer prote 90.8 0.18 6E-06 51.3 4.5 35 249-283 53-90 (437)
491 2gco_A H9, RHO-related GTP-bin 90.8 0.13 4.3E-06 46.1 3.1 23 250-272 26-48 (201)
492 3ice_A Transcription terminati 90.8 0.14 5E-06 51.3 3.7 25 249-273 174-198 (422)
493 2h17_A ADP-ribosylation factor 90.8 0.11 3.6E-06 45.6 2.5 23 250-272 22-44 (181)
494 2hup_A RAS-related protein RAB 90.8 0.13 4.3E-06 46.2 3.0 23 250-272 30-52 (201)
495 2il1_A RAB12; G-protein, GDP, 90.7 0.12 4.3E-06 45.7 2.9 21 251-271 28-48 (192)
496 2qnr_A Septin-2, protein NEDD5 90.7 0.1 3.5E-06 50.6 2.5 23 250-272 19-41 (301)
497 1w4r_A Thymidine kinase; type 90.7 0.22 7.5E-06 45.0 4.5 35 249-283 20-57 (195)
498 2j0v_A RAC-like GTP-binding pr 90.6 0.13 4.6E-06 46.2 3.1 23 250-272 10-32 (212)
499 3qks_A DNA double-strand break 90.6 0.16 5.3E-06 46.2 3.5 26 250-275 24-49 (203)
500 3cpj_B GTP-binding protein YPT 90.5 0.15 5E-06 46.5 3.3 23 250-272 14-36 (223)
No 1
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=100.00 E-value=6.2e-57 Score=470.48 Aligned_cols=384 Identities=38% Similarity=0.587 Sum_probs=227.1
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 012000 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQVSDRLQALNR 130 (473)
Q Consensus 52 ~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~raek~k~~i~~rl~~l~~ 130 (473)
+++++|++++++||++|++|+|++|+.+|++|+++|+.+++++ .++..++.++.|+.+|++|+|+++..+++..+.-.
T Consensus 6 ~~~~~A~~~~~~Av~~D~~g~~~eA~~~Y~~a~~~l~~~~k~e~~~~~~k~~ir~k~~ey~~Rae~Lk~~l~k~~~~~~- 84 (444)
T 2zan_A 6 TNLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLKKKEKKPQ- 84 (444)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHhhccccccc-
Confidence 4789999999999999999999999999999999999999998 78878999999999999999999988643321100
Q ss_pred hhCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccccccccccCCCccccccCCCcChHHHHHhhhccccCC
Q 012000 131 RAGGTSTSKSTSPHAQTAAVSSTSNFRKNISPNSPRSSRNNPVVRNQTEKTGSSKPLAEAGNGYDSKLVEMINTAIVDRS 210 (473)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iv~~~ 210 (473)
.+.+. ... + . . ..+...+.............+.+.+...++.+.
T Consensus 85 ------~~~~~-------~~~----~--------~--~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 128 (444)
T 2zan_A 85 ------KPVKE-------EQS----G--------P--V---------DEKGNDSDGEAESDDPEKKKLQNQLQGAIVIER 128 (444)
T ss_dssp ---------------------------------------------------------------------------CBCCC
T ss_pred ------ccccc-------ccC----C--------c--c---------cccCCCCcccccccchHHHHHHHHhhcceeccC
Confidence 00000 000 0 0 0 000001111122234455677788888899999
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~~~~l~~~~ 289 (473)
|+++|+||+|++++++.|++.+.+|+.++++|.+...+++++|||||||||||+||+++|+++ +.+|+.++++++.+.|
T Consensus 129 ~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~~~ 208 (444)
T 2zan_A 129 PNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVSKW 208 (444)
T ss_dssp CCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC------
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHhhh
Confidence 999999999999999999999999999999998767788999999999999999999999999 8999999999999988
Q ss_pred hhhhhhhh-----------cceeeeeccccc---cccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 290 VGEGEKLV-----------RTLFMIDSIMST---RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 290 ~g~~~~~~-----------~~if~IDei~~~---~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
+|..+..+ +.+++|||++.. +.........++.++|+..|+++.. ...+++||+|||+|+.||++
T Consensus 209 ~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~~~-~~~~v~vI~atn~~~~ld~a 287 (444)
T 2zan_A 209 LGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPWVLDSA 287 (444)
T ss_dssp ---CCCTHHHHHHHHHHSCSEEEEESCTTTTCCCSSCCCCGGGHHHHHHHHTTTTCSSC-CCSSCEEEEEESCGGGSCHH
T ss_pred cchHHHHHHHHHHHHHHcCCeEEEEechHhhccCCCCccccHHHHHHHHHHHHHhCccc-CCCCEEEEecCCCccccCHH
Confidence 88765443 357789999875 3344566778899999999998753 34569999999999999999
Q ss_pred HhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc-------
Q 012000 356 VLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI------- 428 (473)
Q Consensus 356 l~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~------- 428 (473)
++|||+..+++++|+.++|..||+.++...+..+++.++..|+..|+||+|+||..+|++|++.+++++....
T Consensus 288 l~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~a~~~a~r~~~~~~~~~~~~~ 367 (444)
T 2zan_A 288 IRRRFEKRIYIPLPEAHARAAMFRLHLGSTQNSLTEADFQELGRKTDGYSGADISIIVRDALMQPVRKVQSATHFKKVRG 367 (444)
T ss_dssp HHTTCCEEEECCCCCHHHHHHHHHHHHTTSCEECCHHHHHHHHHHTTTCCHHHHHHHHHHHHTHHHHHHHHCSEEEEECC
T ss_pred HHhhcceEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhhhhhcc
Confidence 9999999999999999999999999999888777899999999999999999999999999999999864310
Q ss_pred -------------c----------------cc--ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCC
Q 012000 429 -------------L----------------TV--KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 473 (473)
Q Consensus 429 -------------~----------------~~--~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~~ 473 (473)
. .. .....++|+++||..||+.++||++.++++.|++|+++||++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~a~~~~~ps~~~~~~~~~~~~~~~~~~~ 443 (444)
T 2zan_A 368 PSRADPNCIVNDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMWDMLRSLSSTKPTVNEQDLLKLKKFTEDFGQE 443 (444)
T ss_dssp BCSSCTTSBCSCEEEEECTTSTTEEECCTTTSCTTCBCCCCEEHHHHHHHHHTCCCSCCHHHHHHHHHHTSSCTTT
T ss_pred ccccccccccccccccCCCCcccchhcccccCchhhccCCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcCC
Confidence 0 00 001235899999999999999999999999999999999985
No 2
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.4e-46 Score=381.44 Aligned_cols=250 Identities=30% Similarity=0.545 Sum_probs=212.8
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 203 ~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
....+.+.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..||+|+|||||||||||+||+|+|++++.+|+.++
T Consensus 135 ~~~~~~~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~ 214 (405)
T 4b4t_J 135 SLMMVEKVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVS 214 (405)
T ss_dssp TSCEEECSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEE
T ss_pred hhccccCCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEE
Confidence 3456788899999999999999999999999999999999875 578899999999999999999999999999999999
Q ss_pred cCccchhhhhhhhhhhcc-----------eeeeeccccccc---cC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEe
Q 012000 282 ASSLTSKWVGEGEKLVRT-----------LFMIDSIMSTRM---AN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 344 (473)
Q Consensus 282 ~~~l~~~~~g~~~~~~~~-----------if~IDei~~~~~---~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~ 344 (473)
++++.++|+|++++.++. +++|||++.... .. .+....+++++||.+|||+.. ..+|+||+
T Consensus 215 ~s~l~sk~vGese~~vr~lF~~Ar~~aP~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~V~vIa 292 (405)
T 4b4t_J 215 GAELVQKYIGEGSRMVRELFVMAREHAPSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFET--SKNIKIIM 292 (405)
T ss_dssp GGGGSCSSTTHHHHHHHHHHHHHHHTCSEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTC--CCCEEEEE
T ss_pred hHHhhccccchHHHHHHHHHHHHHHhCCceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCC--CCCeEEEe
Confidence 999999999999888764 556888876432 22 223456788999999999964 45699999
Q ss_pred ecCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 012000 345 ATNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 422 (473)
Q Consensus 345 tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~ 422 (473)
|||+|+.||+|++| ||++.|+|++|+.++|.+||+.++++.++. ++.++..||+.|+||||+||.++|++|++.|++
T Consensus 293 ATNrpd~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l~-~dvdl~~lA~~t~G~SGADi~~l~~eA~~~Air 371 (405)
T 4b4t_J 293 ATNRLDILDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNLT-RGINLRKVAEKMNGCSGADVKGVCTEAGMYALR 371 (405)
T ss_dssp EESCSSSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBCC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHH
T ss_pred ccCChhhCCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCCC-ccCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Confidence 99999999999999 999999999999999999999999987765 677899999999999999999999999999998
Q ss_pred HhcccccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHH
Q 012000 423 ELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQW 466 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w 466 (473)
+. ...|+++||+.|++++.|...+..+..++.|
T Consensus 372 ~~-----------~~~vt~~Df~~Al~~v~~~~~~~~~s~~k~~ 404 (405)
T 4b4t_J 372 ER-----------RIHVTQEDFELAVGKVMNKNQETAISVAKLF 404 (405)
T ss_dssp TT-----------CSBCCHHHHHHHHHHHHHHHTCC--------
T ss_pred cC-----------CCCcCHHHHHHHHHHHhCccccccchhHhhh
Confidence 72 2469999999999998765444444444444
No 3
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=5.8e-45 Score=373.79 Aligned_cols=248 Identities=34% Similarity=0.559 Sum_probs=209.1
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
-+++.|+|+|+||+|++++|+.|++.|.+|+.+|++|... ..||+|||||||||||||+||+|+|++++.+|+.+++++
T Consensus 199 ~v~e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 199 TVEEKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp EEESSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred eecCCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 3667899999999999999999999999999999999876 478999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeeccccc---cccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMST---RMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~~---~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+.++|+|++++.++ ++++||+++.. |... ......+.+.++|.+|++... ..+|+||+|||
T Consensus 279 L~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~ViVIaATN 356 (467)
T 4b4t_H 279 LVQKYVGEGARMVRELFEMARTKKACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDP--RGNIKVMFATN 356 (467)
T ss_dssp GCCCSSSHHHHHHHHHHHHHHHTCSEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCC--TTTEEEEEECS
T ss_pred hhcccCCHHHHHHHHHHHHHHhcCCceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCC--CCcEEEEeCCC
Confidence 99999999988775 45568887654 3222 223445678899999998864 45699999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+|+.||+|++| ||++.|+|++|+.++|.+||+.++++..+. .+.+++.||+.|+||||+||.++|++|++.|+++.
T Consensus 357 rpd~LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eAa~~Air~~- 434 (467)
T 4b4t_H 357 RPNTLDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR- 434 (467)
T ss_dssp CTTSBCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHT-
T ss_pred CcccCChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC-
Confidence 99999999999 999999999999999999999999987765 56789999999999999999999999999999873
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhCCCCCH-HHHHHHHHHH
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIRPSLNK-SKWEELEQWN 467 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~ps~~~-~~~~~~~~w~ 467 (473)
...|+++||..|++++.++..+ ....+|.+|+
T Consensus 435 ----------~~~it~~Df~~Al~kV~~g~~k~s~~~~y~~~n 467 (467)
T 4b4t_H 435 ----------RKVATEKDFLKAVDKVISGYKKFSSTSRYMQYN 467 (467)
T ss_dssp ----------CSSBCHHHHHHHHHHHHHHHCC-----------
T ss_pred ----------CCccCHHHHHHHHHHHhcCcccchhHHHHHhhC
Confidence 2468999999999998765433 4566788885
No 4
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=100.00 E-value=7.3e-44 Score=356.86 Aligned_cols=267 Identities=46% Similarity=0.758 Sum_probs=234.6
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~~~~ 284 (473)
|+.+.|+++|+||+|++++|+.|++.+.+|+.++++|.+...|++++|||||||||||+||+++|+++ +.+|+.+++++
T Consensus 2 i~~~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~ 81 (322)
T 1xwi_A 2 IVIERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSD 81 (322)
T ss_dssp CEEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCS
T ss_pred eeecCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHH
Confidence 56678999999999999999999999999999999999777888999999999999999999999999 89999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeecccccc---ccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMSTR---MANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~~~---~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
+.+.|.|+.+..++ .+++|||++... .........++.++|+..|+++.. ...+++||+|||+|+
T Consensus 82 l~~~~~g~~~~~~~~lf~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~ld~~~~-~~~~v~vI~atn~~~ 160 (322)
T 1xwi_A 82 LVSKWLGESEKLVKNLFQLARENKPSIIFIDEIDSLCGSRSENESEAARRIKTEFLVQMQGVGV-DNDGILVLGATNIPW 160 (322)
T ss_dssp SCCSSCCSCHHHHHHHHHHHHHTSSEEEEEETTTGGGCCSSSCCTTHHHHHHHHHHHHHHCSSS-CCTTEEEEEEESCTT
T ss_pred HHhhhhhHHHHHHHHHHHHHHhcCCcEEEeecHHHhccccccccchHHHHHHHHHHHHHhcccc-cCCCEEEEEecCCcc
Confidence 99988887665443 577799998763 334556678899999999998863 245699999999999
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc-
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL- 429 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~- 429 (473)
.+|++++|||+..+++++|+.++|..||+.++...+..+++.++..|+..|+||+|+||..+|++|++.++++......
T Consensus 161 ~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~l~~~~l~~la~~t~G~sgadl~~l~~~A~~~a~r~~~~~~~~ 240 (322)
T 1xwi_A 161 VLDSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQNSLTEADFRELGRKTDGYSGADISIIVRDALMQPVRKVQSATHF 240 (322)
T ss_dssp TSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCBCCCHHHHHHHHHTCTTCCHHHHHHHHHHHHTHHHHHHHHCSEE
T ss_pred cCCHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999999999998888788999999999999999999999999999999998642100
Q ss_pred -----------------------------------cc--ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 430 -----------------------------------TV--KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 430 -----------------------------------~~--~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
.. .....++|+++||..||+.++|+++.++++.|++|.++||+
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~ 320 (322)
T 1xwi_A 241 KKVRGPSRADPNHLVDDLLTPCSPGDPGAIEMTWMDVPGDKLLEPVVSMSDMLRSLSNTKPTVNEHDLLKLKKFTEDFGQ 320 (322)
T ss_dssp EEEEEECSSCTTSEEEEEEEECCSSSTTEEECCGGGSCGGGBCCCCBCHHHHHHHHHTCCCSCCHHHHHHHHHHHHTTCS
T ss_pred hhhccccccccccccccccccccccccchhhccccccccccccCCCcCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHcc
Confidence 00 01123589999999999999999999999999999999997
Q ss_pred C
Q 012000 473 N 473 (473)
Q Consensus 473 ~ 473 (473)
+
T Consensus 321 ~ 321 (322)
T 1xwi_A 321 E 321 (322)
T ss_dssp C
T ss_pred C
Confidence 5
No 5
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.5e-45 Score=373.18 Aligned_cols=242 Identities=34% Similarity=0.564 Sum_probs=212.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
..+++.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..+++|||||||||||||+||+|+|++++.+|+.++++
T Consensus 171 ~~~~~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 171 MKMDKSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CEEESSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred eeeccCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 45678899999999999999999999999999999999876 46789999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhc-----------ceeeeeccccc---cccC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVR-----------TLFMIDSIMST---RMAN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~-----------~if~IDei~~~---~~~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++.++|+|++++.++ +|++|||++.. |... .+....+.+++||.+||++.. ..+|+||+||
T Consensus 251 ~l~sk~vGesek~ir~lF~~Ar~~aP~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~--~~~ViVIaAT 328 (437)
T 4b4t_I 251 ELIQKYLGDGPRLCRQIFKVAGENAPSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDD--RGDVKVIMAT 328 (437)
T ss_dssp GGCCSSSSHHHHHHHHHHHHHHHTCSEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCC--SSSEEEEEEE
T ss_pred HhhhccCchHHHHHHHHHHHHHhcCCcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCC--CCCEEEEEeC
Confidence 999999999988775 45567877654 3222 223446788999999999864 4559999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+|+.||+|++| ||++.|+|++|+.++|.+||+.++.+..+. ++.+++.||..|+||||+||.++|++|++.|+++.
T Consensus 329 Nrpd~LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l~-~dvdl~~LA~~T~GfSGADI~~l~~eA~~~Air~~ 407 (437)
T 4b4t_I 329 NKIETLDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNLS-EDVNLETLVTTKDDLSGADIQAMCTEAGLLALRER 407 (437)
T ss_dssp SCSTTCCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCBC-SCCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHTT
T ss_pred CChhhcCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999987765 56789999999999999999999999999999872
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCCCCCHHHH
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKW 460 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~ 460 (473)
...|+++||.+|++++.|+..++.+
T Consensus 408 -----------~~~It~eDf~~Al~rv~~~~~~e~l 432 (437)
T 4b4t_I 408 -----------RMQVTAEDFKQAKERVMKNKVEENL 432 (437)
T ss_dssp -----------CSCBCHHHHHHHHHHHHHHHCCCSS
T ss_pred -----------CCccCHHHHHHHHHHHhCCCChhhH
Confidence 2459999999999999887666554
No 6
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.7e-44 Score=370.09 Aligned_cols=242 Identities=29% Similarity=0.502 Sum_probs=210.9
Q ss_pred hccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 204 TAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 204 ~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
...+.+.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..||+|+|||||||||||+||+|+|++++.+|+.+++
T Consensus 169 ~~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~ 248 (437)
T 4b4t_L 169 NMTSFEQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPA 248 (437)
T ss_dssp SCEEEESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEG
T ss_pred eeeeccCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 355677899999999999999999999999999999999876 5788999999999999999999999999999999999
Q ss_pred Cccchhhhhhhhhhhc-----------ceeeeeccccccc---cC---cchHHHHHHHHHHHHhcCcCCCCCCcEEEEee
Q 012000 283 SSLTSKWVGEGEKLVR-----------TLFMIDSIMSTRM---AN---ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA 345 (473)
Q Consensus 283 ~~l~~~~~g~~~~~~~-----------~if~IDei~~~~~---~~---~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~t 345 (473)
+++.++|+|+++..++ +|++|||++.... .. .+....+.+++||.+|||+.. ..+|+||+|
T Consensus 249 s~l~sk~~Gese~~ir~~F~~A~~~~P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~--~~~vivI~A 326 (437)
T 4b4t_L 249 SGIVDKYIGESARIIREMFAYAKEHEPCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDN--LGQTKIIMA 326 (437)
T ss_dssp GGTCCSSSSHHHHHHHHHHHHHHHSCSEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSC--TTSSEEEEE
T ss_pred hhhccccchHHHHHHHHHHHHHHhcCCceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccC--CCCeEEEEe
Confidence 9999999999887765 5666888876432 21 233456788999999999864 355999999
Q ss_pred cCCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Q 012000 346 TNKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 346 Tn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
||+|+.||+|++| ||++.|+||+|+.++|.+||+.++.+..+. ++.++..||..|+||||+||.++|++|++.|+++
T Consensus 327 TNrp~~LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~d~dl~~lA~~t~G~sGADi~~l~~eA~~~air~ 405 (437)
T 4b4t_L 327 TNRPDTLDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKKT-GEFDFEAAVKMSDGFNGADIRNCATEAGFFAIRD 405 (437)
T ss_dssp ESSTTSSCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCBC-SCCCHHHHHHTCCSCCHHHHHHHHHHHHHHHHHT
T ss_pred cCCchhhCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHc
Confidence 9999999999998 799999999999999999999999987664 6778999999999999999999999999999987
Q ss_pred hcccccccccccCCCCcHHHHHHHHHhhCCCCCHHH
Q 012000 424 LGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSK 459 (473)
Q Consensus 424 ~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~ 459 (473)
. ...|+++||..|++++.|+...+.
T Consensus 406 ~-----------~~~i~~~d~~~Al~~v~~~~k~e~ 430 (437)
T 4b4t_L 406 D-----------RDHINPDDLMKAVRKVAEVKKLEG 430 (437)
T ss_dssp T-----------CSSBCHHHHHHHHHHHHHTCC---
T ss_pred C-----------CCCCCHHHHHHHHHHHHhccCccc
Confidence 2 246999999999999988766544
No 7
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.2e-44 Score=369.23 Aligned_cols=239 Identities=37% Similarity=0.631 Sum_probs=210.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
..+++.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..+|+|+|||||||||||+||+|+|++++.+|+.++++
T Consensus 170 ~~~~~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s 249 (434)
T 4b4t_M 170 MEVDEKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAP 249 (434)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGG
T ss_pred cccCCCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehh
Confidence 34667899999999999999999999999999999999876 46789999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhc-----------ceeeeeccccc---cccCcc---hHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVR-----------TLFMIDSIMST---RMANEN---DASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~-----------~if~IDei~~~---~~~~~~---~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++.++|+|++++.++ ++++|||++.. |..... ....+.+.+||.+|||+.. ..+|+|||||
T Consensus 250 ~l~~~~vGese~~ir~lF~~A~~~aP~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~--~~~ViVIaaT 327 (434)
T 4b4t_M 250 QLVQMYIGEGAKLVRDAFALAKEKAPTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSS--DDRVKVLAAT 327 (434)
T ss_dssp GGCSSCSSHHHHHHHHHHHHHHHHCSEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCS--SCSSEEEEEC
T ss_pred hhhhcccchHHHHHHHHHHHHHhcCCeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCC--CCCEEEEEeC
Confidence 999999999988775 45568888754 322222 2345678899999999965 4569999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+|+.||+|++| ||++.|+|++|+.++|.+||+.++++..+. ++.++..||+.|+||||+||.++|++|++.|+++.
T Consensus 328 Nrp~~LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~sGADi~~l~~eA~~~a~r~~ 406 (434)
T 4b4t_M 328 NRVDVLDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTTD-DDINWQELARSTDEFNGAQLKAVTVEAGMIALRNG 406 (434)
T ss_dssp SSCCCCCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCBC-SCCCHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhcCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCCC-CcCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHcC
Confidence 999999999999 999999999999999999999999987665 56789999999999999999999999999999873
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
...|+++||.+|+++++|+.++
T Consensus 407 -----------~~~i~~~Df~~Al~~v~~~~~~ 428 (434)
T 4b4t_M 407 -----------QSSVKHEDFVEGISEVQARKSK 428 (434)
T ss_dssp -----------CSSBCHHHHHHHHHSCSSSCCC
T ss_pred -----------CCCcCHHHHHHHHHHHhCCCCc
Confidence 2469999999999999998764
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=100.00 E-value=8.9e-43 Score=348.99 Aligned_cols=268 Identities=46% Similarity=0.751 Sum_probs=233.8
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.++.++|+++|+||+|++.+++.|++++.+|+.++++|.....+++++|||||||||||+||+++|++++.+|+.+++++
T Consensus 7 ~~~~~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~ 86 (322)
T 3eie_A 7 AILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSD 86 (322)
T ss_dssp CSEEECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHH
T ss_pred ceeecCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHH
Confidence 56778999999999999999999999999999999999988888999999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeeccccccc---cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ 350 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~ 350 (473)
+.+.|+++.+..++ .+++|||++.... ........++.++++..|+++.. ...+++||+|||.++
T Consensus 87 l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~atn~~~ 165 (322)
T 3eie_A 87 LVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGN-DSQGVLVLGATNIPW 165 (322)
T ss_dssp HHTTTGGGHHHHHHHHHHHHHHTSSEEEEEECGGGGSCC------CCTHHHHHHHHHHHGGGGT-SCCCEEEEEEESCGG
T ss_pred HhhcccchHHHHHHHHHHHHHhcCCeEEEechhhhhhccCCCCcchHHHHHHHHHHHHhccccc-cCCceEEEEecCChh
Confidence 99999888766553 5777999986543 33455667889999999998863 345699999999999
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccc
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT 430 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~ 430 (473)
.||++++|||+..+++++|+.++|..||+.++.+.+..+++.++..|+..++||+|+||.++|++|++.++++.......
T Consensus 166 ~ld~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~l~~la~~t~g~sg~di~~l~~~a~~~a~r~~~~~~~~ 245 (322)
T 3eie_A 166 QLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPCVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQPIRKIQSATHF 245 (322)
T ss_dssp GSCHHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCCCCCHHHHHHHHHTTTTCCHHHHHHHHHHHTTHHHHHHHHCEEE
T ss_pred hCCHHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999999998888899999999999999999999999999999999987542100
Q ss_pred --------------------------------cccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCC
Q 012000 431 --------------------------------VKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 473 (473)
Q Consensus 431 --------------------------------~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~~ 473 (473)
......++|+++||.+|++.++|+++.+++++|++|+++||++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~~~~~~~~~ 320 (322)
T 3eie_A 246 KDVSTEDDETRKLTPCSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTRDFGQE 320 (322)
T ss_dssp EECC----CCCCEEECCSSCTTEEEEEGGGSCSSCBCCCCCCHHHHHHHHHHSCCSSCTTHHHHHHHHHHHHC--
T ss_pred hhhccccccccccccccccccccccccccccccccccCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhcCC
Confidence 0011236799999999999999999999999999999999974
No 9
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.1e-43 Score=362.93 Aligned_cols=242 Identities=35% Similarity=0.592 Sum_probs=210.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
..+++.|+++|+||+|++++|+.|++.+.+|+.+|++|... ..|++|+|||||||||||+||+|+|++++.+|+.++++
T Consensus 161 ~~~~~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 161 MGENEKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CEEESSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred ccCCCCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 34567899999999999999999999999999999999875 57889999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhhc-----------ceeeeeccccc---ccc---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLVR-----------TLFMIDSIMST---RMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~~-----------~if~IDei~~~---~~~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++.++|+|+++..++ ++++||+++.. +.. ..+....+++++||.+|||+... .+|+||+||
T Consensus 241 ~l~~~~~Ge~e~~ir~lF~~A~~~aP~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~--~~v~vI~aT 318 (428)
T 4b4t_K 241 EFVHKYLGEGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQS--TNVKVIMAT 318 (428)
T ss_dssp GTCCSSCSHHHHHHHHHHHHHHHTCSEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSS--CSEEEEEEE
T ss_pred hhhccccchhHHHHHHHHHHHHHcCCCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCC--CCEEEEEec
Confidence 999999999887775 45568888653 321 23345678999999999999654 459999999
Q ss_pred CCCCCCCHHHhc--ccccccccC-CCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Q 012000 347 NKPQELDDAVLR--RLVKRIYVP-LPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~-~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
|+|+.||+|++| ||++.|+|| +|+.++|..||+.++.+.++. ++.+++.||..|+||||+||.++|++|++.|+++
T Consensus 319 N~~~~LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l~-~~~dl~~lA~~t~G~sgadi~~l~~eA~~~a~r~ 397 (428)
T 4b4t_K 319 NRADTLDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRK 397 (428)
T ss_dssp SCSSSCCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCBC-TTCCHHHHHHHTTTCCHHHHHHHHHHHHHHHHHT
T ss_pred CChhhcChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence 999999999999 999999996 899999999999999987765 6778999999999999999999999999999987
Q ss_pred hcccccccccccCCCCcHHHHHHHHHh-hCCCCCHHHH
Q 012000 424 LGTNILTVKANQLRPLRYEDFQKAMAV-IRPSLNKSKW 460 (473)
Q Consensus 424 ~~~~~~~~~~~~~~~it~~df~~al~~-~~ps~~~~~~ 460 (473)
. ...|+++||.+|+.. ++++.+.+++
T Consensus 398 ~-----------~~~i~~~d~~~A~~~~~~~~~~~~~~ 424 (428)
T 4b4t_K 398 N-----------RYVILQSDLEEAYATQVKTDNTVDKF 424 (428)
T ss_dssp T-----------CSSBCHHHHHHHHHHHSCSCCCSSCC
T ss_pred C-----------CCCCCHHHHHHHHHHhhCccCCccHh
Confidence 3 246999999999976 5666555443
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=100.00 E-value=1.4e-42 Score=352.11 Aligned_cols=278 Identities=45% Similarity=0.737 Sum_probs=223.3
Q ss_pred ChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 195 DSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 195 ~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...+.+.+...++.+.|+++|+||+|++++++.|++.+.+|+.++++|.....+++++|||||||||||+||+++|++++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~ 109 (355)
T 2qp9_X 30 NKKLRGALSSAILSEKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEAN 109 (355)
T ss_dssp -----------------CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhhhcccCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhC
Confidence 35566677778888999999999999999999999999999999999998888889999999999999999999999999
Q ss_pred CcEEEEecCccchhhhhhhhhhh-----------cceeeeeccccccc---cCcchHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 275 ATFFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 275 ~~~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
.+|+.++++++...|.+..+..+ +.+++|||++.... ........++.++|+..|+++... ..++
T Consensus 110 ~~~~~v~~~~l~~~~~g~~~~~~~~~f~~a~~~~~~vl~iDEid~l~~~r~~~~~~~~~~~~~~ll~~l~~~~~~-~~~v 188 (355)
T 2qp9_X 110 STFFSVSSSDLVSKWMGESEKLVKQLFAMARENKPSIIFIDQVDALTGTRGEGESEASRRIKTELLVQMNGVGND-SQGV 188 (355)
T ss_dssp CEEEEEEHHHHHSCC---CHHHHHHHHHHHHHTSSEEEEEECGGGGTC------CTHHHHHHHHHHHHHHHCC----CCE
T ss_pred CCEEEeeHHHHhhhhcchHHHHHHHHHHHHHHcCCeEEEEechHhhcccCCCCcchHHHHHHHHHHHHhhccccc-CCCe
Confidence 99999999999888877765443 35778999986543 345566788899999999988532 4569
Q ss_pred EEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 012000 341 IVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 341 ~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a 420 (473)
+||+|||.++.||++++|||+..+++++|+.++|..||+.++...+..+++.++..|+..++||+|+||.++|++|++.|
T Consensus 189 ~vI~atn~~~~ld~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~~~~~~~l~~la~~t~G~sg~dl~~l~~~A~~~a 268 (355)
T 2qp9_X 189 LVLGATNIPWQLDSAIRRRFERRIYIPLPDLAARTTMFEINVGDTPSVLTKEDYRTLGAMTEGYSGSDIAVVVKDALMQP 268 (355)
T ss_dssp EEEEEESCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCBCCCHHHHHHHHHHTTTCCHHHHHHHHHHHHHHH
T ss_pred EEEeecCCcccCCHHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998887778999999999999999999999999999999
Q ss_pred HHHhccccc------------------------------c--cccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHH
Q 012000 421 IRELGTNIL------------------------------T--VKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNR 468 (473)
Q Consensus 421 ~~~~~~~~~------------------------------~--~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~ 468 (473)
+++...... . ......++|+++||..||+.++|+++.++++.|++|.+
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~df~~Al~~~~ps~~~~~~~~~~~~~~ 348 (355)
T 2qp9_X 269 IRKIQSATHFKDVSTEDDETRKLTPSSPGDDGAIEMSWTDIEADELKEPDLTIKDFLKAIKSTRPTVNEDDLLKQEQFTR 348 (355)
T ss_dssp HHHHHHCSEEEECCC-----CCEEEECTTSSSEEECCGGGSCGGGBCCCCBCHHHHHHHHHHSCCSSCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccccccccccCcCCccccchhhcccccccccccccCCccHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 998532100 0 01112467999999999999999999999999999999
Q ss_pred hhCCC
Q 012000 469 EFGSN 473 (473)
Q Consensus 469 ~~g~~ 473 (473)
+||++
T Consensus 349 ~~~~~ 353 (355)
T 2qp9_X 349 DFGQE 353 (355)
T ss_dssp HTC--
T ss_pred HhccC
Confidence 99975
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=3.8e-45 Score=400.63 Aligned_cols=263 Identities=36% Similarity=0.652 Sum_probs=180.0
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
....|+++|+||+|++++|+.|++.+.+|+.+|++|..+ ..+++|+|||||||||||++|+++|++++.+|+.++++++
T Consensus 468 ~~~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l 547 (806)
T 3cf2_A 468 VVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPEL 547 (806)
T ss_dssp CCBCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHH
T ss_pred cccCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchh
Confidence 445689999999999999999999999999999999876 5788999999999999999999999999999999999999
Q ss_pred chhhhhhhhhhhc-----------ceeeeeccccccc---c---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 286 TSKWVGEGEKLVR-----------TLFMIDSIMSTRM---A---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 286 ~~~~~g~~~~~~~-----------~if~IDei~~~~~---~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
+++|+|++++.++ +|++|||++.... . ..++..++++++||.+|||+.. ..+|+||||||+
T Consensus 548 ~s~~vGese~~vr~lF~~Ar~~~P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~--~~~V~vi~aTN~ 625 (806)
T 3cf2_A 548 LTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATNR 625 (806)
T ss_dssp HTTTCSSCHHHHHHHHHHHHTTCSEEEECSCGGGCC--------------CHHHHHHHHHHHSSCS--SSSEEEECC-CC
T ss_pred hccccchHHHHHHHHHHHHHHcCCceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCC--CCCEEEEEeCCC
Confidence 9999999988775 4556888876432 2 2344567899999999999965 456999999999
Q ss_pred CCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 349 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 349 ~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
|+.||+|++| ||+++|+|++|+.++|.+||+.++++.++. ++.++..||+.|+||||+||.++|++|++.|+++...
T Consensus 626 p~~lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~~-~~~dl~~la~~t~g~SGadi~~l~~~A~~~a~r~~~~ 704 (806)
T 3cf2_A 626 PDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESIE 704 (806)
T ss_dssp SSSSCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC--C-CC----------------CHHHHHHHHHHHHHHHHHC
T ss_pred chhCCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCCC-CCCCHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999 999999999999999999999999887765 6789999999999999999999999999999998643
Q ss_pred ccc--------------ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 427 NIL--------------TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 427 ~~~--------------~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
... .......++|+++||++||+.++||+++++++.|++|.++|+.
T Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSvs~~~l~~y~~~~~~f~~ 764 (806)
T 3cf2_A 705 SEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQQ 764 (806)
T ss_dssp -----------------------CCC----CCTTTC---------------CCCC-----
T ss_pred hhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHhc
Confidence 110 1112334689999999999999999999999999999999874
No 12
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.9e-39 Score=329.46 Aligned_cols=287 Identities=46% Similarity=0.852 Sum_probs=243.6
Q ss_pred ccccCCCcChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHH
Q 012000 187 LAEAGNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLA 266 (473)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La 266 (473)
........+..+.+.+...+++++++++|+||+|++.+++.|++.+.+|+..+++|.....+++++||+||||||||+||
T Consensus 55 ~~~~l~~~~~~~~~~i~~~i~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la 134 (357)
T 3d8b_A 55 VDERLKNLEPKMIELIMNEIMDHGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIG 134 (357)
T ss_dssp --CCSTTSCHHHHHHHHHHTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHH
T ss_pred HHHHhccCChHHHHHHHhhcccCCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHH
Confidence 34555677888889999999999999999999999999999999999999999998877778899999999999999999
Q ss_pred HHHHHHcCCcEEEEecCccchhhhhhhhhhh-----------cceeeeeccccccc---cCcchHHHHHHHHHHHHhcCc
Q 012000 267 KAVASESQATFFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 267 ~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~ 332 (473)
+++|++++.+|+.++++++...|.+..+..+ +.+++|||++.... ........++.+.++..+++.
T Consensus 135 ~aia~~~~~~~~~i~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~lL~~l~~~ 214 (357)
T 3d8b_A 135 KCIASQSGATFFSISASSLTSKWVGEGEKMVRALFAVARCQQPAVIFIDEIDSLLSQRGDGEHESSRRIKTEFLVQLDGA 214 (357)
T ss_dssp HHHHHHTTCEEEEEEGGGGCCSSTTHHHHHHHHHHHHHHHTCSEEEEEETHHHHTBC------CHHHHHHHHHHHHHHC-
T ss_pred HHHHHHcCCeEEEEehHHhhccccchHHHHHHHHHHHHHhcCCeEEEEeCchhhhccCCCCcchHHHHHHHHHHHHHhcc
Confidence 9999999999999999999888877655433 36788999976543 233455678889999999988
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
......+++||+|||.++.+++++++||...+++++|+.++|..++..++...++.+++.++..|+..++||+++||..|
T Consensus 215 ~~~~~~~v~vI~atn~~~~l~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~l~~la~~t~G~s~~dl~~l 294 (357)
T 3d8b_A 215 TTSSEDRILVVGATNRPQEIDEAARRRLVKRLYIPLPEASARKQIVINLMSKEQCCLSEEEIEQIVQQSDAFSGADMTQL 294 (357)
T ss_dssp ---CCCCEEEEEEESCGGGBCHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCBCCCHHHHHHHHHHTTTCCHHHHHHH
T ss_pred cccCCCCEEEEEecCChhhCCHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCCCccHHHHHHHHHHcCCCCHHHHHHH
Confidence 65556679999999999999999999999999999999999999999999888888899999999999999999999999
Q ss_pred HHHHHHHhHHHhcccc-cccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCC
Q 012000 413 CEEAAMMPIRELGTNI-LTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 473 (473)
Q Consensus 413 ~~~A~~~a~~~~~~~~-~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~~ 473 (473)
|+.|+..+++++.... ......+.++|+++||..|+..++|+++.++++.|++|.++||+.
T Consensus 295 ~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~ps~~~~~~~~~~~~~~~~g~~ 356 (357)
T 3d8b_A 295 CREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRPSVSPKDLELYENWNKTFGCG 356 (357)
T ss_dssp HHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCCCCCHHHHHHHHHHHHHhCCC
Confidence 9999999999875421 122234457899999999999999999999999999999999973
No 13
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=100.00 E-value=1.6e-38 Score=313.79 Aligned_cols=276 Identities=52% Similarity=0.865 Sum_probs=229.4
Q ss_pred HHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 197 KLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 197 ~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
++.+.+...++.++|+++|++|+|++.+++.|.+.+..|..++++|.+...+++++||+||||||||++|+++|++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~ 81 (297)
T 3b9p_A 2 KLVQLILDEIVEGGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSAT 81 (297)
T ss_dssp CHHHHHHTTTBCCSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCE
T ss_pred cHHHHHHHHhccCCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCC
Confidence 45667778899999999999999999999999999999999999988777788999999999999999999999999999
Q ss_pred EEEEecCccchhhhhhhhhhh-----------cceeeeeccccccccC---cchHHHHHHHHHHHHhcCcCCCC-CCcEE
Q 012000 277 FFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRMAN---ENDASRRLKSEFLIQFDGVTSNP-NDLVI 341 (473)
Q Consensus 277 ~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~~~---~~~~~~~~~~~ll~~ldg~~~~~-~~~v~ 341 (473)
|+.++++++...+.+.....+ +.+++|||++...... ......++.+.++..+++..... ..+++
T Consensus 82 ~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~ 161 (297)
T 3b9p_A 82 FLNISAASLTSKYVGDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIV 161 (297)
T ss_dssp EEEEESTTTSSSSCSCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEE
T ss_pred eEEeeHHHHhhcccchHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEE
Confidence 999999999888776654433 3678899997764432 23334677888999998875432 25699
Q ss_pred EEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhH
Q 012000 342 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 342 vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~ 421 (473)
||++||.++.+++++++||+..+++++|+.++|..|++.++...+..+++.++..|+..+.||+++||..+|+.|+..++
T Consensus 162 vi~~tn~~~~l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~~~~~~~~~~la~~~~g~~~~~l~~l~~~a~~~a~ 241 (297)
T 3b9p_A 162 VLAATNRPQELDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGSPLDTEALRRLAKITDGYSGSDLTALAKDAALEPI 241 (297)
T ss_dssp EEEEESCGGGBCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSCCSCHHHHHHHHHHTTTCCHHHHHHHHHHHTTHHH
T ss_pred EEeecCChhhCCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999988877889999999999999999999999999999999
Q ss_pred HHhcccc-cccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCC
Q 012000 422 RELGTNI-LTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGS 472 (473)
Q Consensus 422 ~~~~~~~-~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~ 472 (473)
+++.... .........+|+.+||..|+..++|++++++++.|++|.++||+
T Consensus 242 r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~~s~~~~~~~~~~~~~~~~~~ 293 (297)
T 3b9p_A 242 RELNVEQVKCLDISAMRAITEQDFHSSLKRIRRSVAPQSLNSYEKWSQDYGD 293 (297)
T ss_dssp HTCC--------CCCCCCCCHHHHHHHTTSCCCSSCHHHHHHHHHHC-----
T ss_pred HHHhhhhcccccccccCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCC
Confidence 9865421 11222344689999999999999999999999999999999996
No 14
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=100.00 E-value=2.6e-38 Score=324.66 Aligned_cols=283 Identities=56% Similarity=0.871 Sum_probs=231.7
Q ss_pred CCCcChHHHHHhhhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHH
Q 012000 191 GNGYDSKLVEMINTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVA 270 (473)
Q Consensus 191 ~~~~~~~~~~~~~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA 270 (473)
....+..+.+.+...+++++++++|+||+|++.+++.|.+++.+|..++++|.....+++++|||||||||||+||+++|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia 169 (389)
T 3vfd_A 90 FRNVDSNLANLIMNEIVDNGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVA 169 (389)
T ss_dssp -------CCTTGGGTTBCCSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHH
T ss_pred cccccHHHHHHHHhhhhccCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHH
Confidence 34455666677788899999999999999999999999999999999999998887788999999999999999999999
Q ss_pred HHcCCcEEEEecCccchhhhhhhhhhh-----------cceeeeeccccccc---cCcchHHHHHHHHHHHHhcCcCCCC
Q 012000 271 SESQATFFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGVTSNP 336 (473)
Q Consensus 271 ~e~~~~~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~~~~~ 336 (473)
.+++.+|+.+++.++...|.+..+..+ ..+++|||++.... ........++...|+..+++.....
T Consensus 170 ~~~~~~~~~v~~~~l~~~~~g~~~~~~~~~~~~a~~~~~~il~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~ 249 (389)
T 3vfd_A 170 AESNATFFNISAASLTSKYVGEGEKLVRALFAVARELQPSIIFIDQVDSLLCERREGEHDASRRLKTEFLIEFDGVQSAG 249 (389)
T ss_dssp HHTTCEEEEECSCCC-------CHHHHHHHHHHHHHSSSEEEEEETGGGGC--------CTHHHHHHHHHHHHHHHC---
T ss_pred HhhcCcEEEeeHHHhhccccchHHHHHHHHHHHHHhcCCeEEEEECchhhcccCCCccchHHHHHHHHHHHHhhcccccC
Confidence 999999999999999888877655433 25788999977533 2234456788899999999887655
Q ss_pred CCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 012000 337 NDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 416 (473)
Q Consensus 337 ~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A 416 (473)
..+++||+|||.++.|++++++||...+++++|+.++|..||+.++...+..+++.++..|+..++||++++|..||+.|
T Consensus 250 ~~~v~vI~atn~~~~l~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~l~~~~~~~la~~~~g~~~~~l~~L~~~a 329 (389)
T 3vfd_A 250 DDRVLVMGATNRPQELDEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGSPLTQKELAQLARMTDGYSGSDLTALAKDA 329 (389)
T ss_dssp --CEEEEEEESCGGGCCHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCCCSCHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred CCCEEEEEecCCchhcCHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 67799999999999999999999998899999999999999999999988888999999999999999999999999999
Q ss_pred HHHhHHHhccccc-ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhCCC
Q 012000 417 AMMPIRELGTNIL-TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFGSN 473 (473)
Q Consensus 417 ~~~a~~~~~~~~~-~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g~~ 473 (473)
+..+++++..... .........|+.+||..+++.++|+++.+.++.|++|.++||+.
T Consensus 330 ~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~~~s~~~~~l~~~~~~~~~~g~~ 387 (389)
T 3vfd_A 330 ALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKIKRSVSPQTLEAYIRWNKDFGDT 387 (389)
T ss_dssp TTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHCCCSSCHHHHHHHHHHHHHCC--
T ss_pred HHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCc
Confidence 9999998765322 22233457899999999999999999999999999999999963
No 15
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=100.00 E-value=1.9e-38 Score=314.59 Aligned_cols=264 Identities=36% Similarity=0.649 Sum_probs=221.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
+++.+.|+++|+||+|++++++.|++++.+|+.+++.|.... .+++++|||||||||||+||+++|++++.+|+.++++
T Consensus 4 ~~~~~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~ 83 (301)
T 3cf0_A 4 ETVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGP 83 (301)
T ss_dssp CCCEECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHH
T ss_pred cccccCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhH
Confidence 456678999999999999999999999999999999998653 6778999999999999999999999999999999999
Q ss_pred ccchhhhhhhhhhh-----------cceeeeecccccccc------CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKLV-----------RTLFMIDSIMSTRMA------NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~~-----------~~if~IDei~~~~~~------~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++.+.|+|+.+..+ +.+++|||++..... .......++.++++..|+++.. ..+++||+||
T Consensus 84 ~l~~~~~g~~~~~~~~~f~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~--~~~v~vi~at 161 (301)
T 3cf0_A 84 ELLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGAT 161 (301)
T ss_dssp HHHHHHHTTCTTHHHHHHHHHHHTCSEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCT--TSSEEEEEEE
T ss_pred HHHhhhcCchHHHHHHHHHHHHhcCCeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccC--CCCEEEEEec
Confidence 99888887765433 357789999764321 1122345678899999998753 4569999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|+++.||++++| ||+..+++++|+.++|.+|++.++...++. .+.++..++..++||+|+||.++|++|++.++++.
T Consensus 162 n~~~~ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~~-~~~~~~~la~~~~g~sg~dl~~l~~~a~~~a~~~~ 240 (301)
T 3cf0_A 162 NRPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRES 240 (301)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-SSCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred CCccccChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCCC-ccchHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 999999999999999999999999887664 56789999999999999999999999999998875
Q ss_pred cccccc-----------c---ccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhC
Q 012000 425 GTNILT-----------V---KANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471 (473)
Q Consensus 425 ~~~~~~-----------~---~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g 471 (473)
...... . ......+|+++||..||+.++|+++.++++.|++|.++|.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~~s~~~~~~~~~~~~~~~~~ 301 (301)
T 3cf0_A 241 IESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 301 (301)
T ss_dssp HHHHC--------------------CCCBCHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHC
T ss_pred HHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhC
Confidence 321000 0 0122367999999999999999999999999999999983
No 16
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=100.00 E-value=4e-38 Score=345.11 Aligned_cols=246 Identities=35% Similarity=0.570 Sum_probs=213.2
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
..|.++|+||+|++++++.|++.+.+|+.+|++|..++ .||+|||||||||||||+||+++|++++.+|+.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 45789999999999999999999999999999999874 78999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhc-----------ceeeeeccccc---cccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCC
Q 012000 288 KWVGEGEKLVR-----------TLFMIDSIMST---RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD 353 (473)
Q Consensus 288 ~~~g~~~~~~~-----------~if~IDei~~~---~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld 353 (473)
+|.|+++..++ +|++|||++.. +....++..++++++|+.+|+++.. ..+|+||+|||+++.||
T Consensus 277 k~~gese~~lr~lF~~A~~~~PsIIfIDEiDal~~~r~~~~~~~~~riv~~LL~~mdg~~~--~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSCSEEEEEESGGGTCCTTTTCCCTTHHHHHHHHHTHHHHCCG--GGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcCCeEEEEehhcccccccCCCCChHHHHHHHHHHHHHhcccc--cCCEEEEEecCChhhcC
Confidence 99999887765 45667877654 4445666778999999999999965 34599999999999999
Q ss_pred HHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccc
Q 012000 354 DAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTV 431 (473)
Q Consensus 354 ~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~ 431 (473)
++++| ||++.|++++|+.++|.+||+.++.+..+. ++.++..||..|+||+|+||.+||++|++.|+++........
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~~-~dvdl~~lA~~T~GfsgaDL~~Lv~eA~~~A~~r~~~~i~~~ 433 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEEC-TTCCHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHHHHHGGGT
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCCC-cccCHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccccccc
Confidence 99999 999999999999999999999999887665 678999999999999999999999999999998854321110
Q ss_pred ------ccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 432 ------KANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 432 ------~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
.......|+++||..|++.++|+...
T Consensus 434 ~~~~~~e~~~~~~v~~~Df~~Al~~~~ps~~r 465 (806)
T 3cf2_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSALR 465 (806)
T ss_dssp CCCCSHHHHHHCEECTTHHHHHHSSSSCCCCC
T ss_pred ccccchhhhccceeeHHHHHHHHHhCCCcccc
Confidence 11122468899999999999987643
No 17
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=100.00 E-value=2e-36 Score=296.04 Aligned_cols=250 Identities=32% Similarity=0.517 Sum_probs=189.1
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
..|+++|+||+|++++|+.|++.+.+|+.++..+.... .+++|++|+||||||||+|++++|.+++..++.+++.++..
T Consensus 3 ~~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~ 82 (274)
T 2x8a_A 3 TVPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLN 82 (274)
T ss_dssp ---------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCS
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHh
Confidence 35789999999999999999999999999999998764 66789999999999999999999999999999999999988
Q ss_pred hhhhhhhhhh-----------cceeeeecccccccc---CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCC
Q 012000 288 KWVGEGEKLV-----------RTLFMIDSIMSTRMA---NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD 353 (473)
Q Consensus 288 ~~~g~~~~~~-----------~~if~IDei~~~~~~---~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld 353 (473)
.+.++.+..+ +.++++|+++..... .......++.++++..|+|... ...++++++||+|+.||
T Consensus 83 ~~~~~~~~~i~~vf~~a~~~~p~i~~~Deid~~~~~r~~~~~~~~~~~~~~~l~~Lsgg~~--~~~~i~ia~tn~p~~LD 160 (274)
T 2x8a_A 83 MYVGESERAVRQVFQRAKNSAPCVIFFDEVDALCPRRSDRETGASVRVVNQLLTEMDGLEA--RQQVFIMAATNRPDIID 160 (274)
T ss_dssp STTHHHHHHHHHHHHHHHHTCSEEEEEETCTTTCC---------CTTHHHHHHHHHHTCCS--TTCEEEEEEESCGGGSC
T ss_pred hhhhHHHHHHHHHHHHHHhcCCCeEeeehhhhhhcccCCCcchHHHHHHHHHHHhhhcccc--cCCEEEEeecCChhhCC
Confidence 8777665443 345668888754321 1122234677899999998854 34589999999999999
Q ss_pred HHHhc--ccccccccCCCcHHHHHHHHHHHhccCC-CC-CChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 354 DAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQA-FS-LPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 354 ~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~-~~-l~~~~l~~La~~--t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
++++| ||++.|++++|+.++|.+||+.+++... .. ..+.++..||.. |+||||+||.++|++|++.|+++....
T Consensus 161 ~al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~~~~~~~~~~~la~~~~~~g~sgadl~~l~~~a~~~a~~~~~~~ 240 (274)
T 2x8a_A 161 PAILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKPPLDADVNLEAIAGDLRCDCYTGADLSALVREASICALRQEMAR 240 (274)
T ss_dssp HHHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTTBBCTTCCHHHHHTCSGGGSCCHHHHHHHHHHHHHHHHHHHC--
T ss_pred HhhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCCCCccccCHHHHHHhhccCCcCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999 9999999999999999999999986532 22 256789999986 459999999999999999999875432
Q ss_pred ccccccccCCCCcHHHHHHHHHhhCCCCCHHHH
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKW 460 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~ 460 (473)
...........|+++||++|++.++|+++++++
T Consensus 241 ~~~~~~~~~~~i~~~df~~al~~~~ps~~~~~~ 273 (274)
T 2x8a_A 241 QKSGNEKGELKVSHKHFEEAFKKVRSSISKKDQ 273 (274)
T ss_dssp ---------CCBCHHHHHHHHTTCCCCC-----
T ss_pred ccccccccCCeecHHHHHHHHHHhcCCCChhhc
Confidence 111111223579999999999999999998864
No 18
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=100.00 E-value=1.1e-31 Score=263.07 Aligned_cols=252 Identities=39% Similarity=0.626 Sum_probs=198.2
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
+...|+++|++|+|++++++.|.+++..|+..++++.... .+++++|||||||||||++|+++|++++.+++.+++.++
T Consensus 8 ~~~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~ 87 (285)
T 3h4m_A 8 VDERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSEL 87 (285)
T ss_dssp EESSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGG
T ss_pred ccCCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHH
Confidence 4567889999999999999999999999999999988764 567899999999999999999999999999999999999
Q ss_pred chhhhhhhhhhh-----------cceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 286 TSKWVGEGEKLV-----------RTLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 286 ~~~~~g~~~~~~-----------~~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
...+.+.....+ +.+++|||++...... ........+..++..+++... ..+++||+|||.
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vI~ttn~ 165 (285)
T 3h4m_A 88 VKKFIGEGASLVKDIFKLAKEKAPSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDA--RGDVKIIGATNR 165 (285)
T ss_dssp CCCSTTHHHHHHHHHHHHHHHTCSEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCS--SSSEEEEEECSC
T ss_pred HHhccchHHHHHHHHHHHHHHcCCeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCC--CCCEEEEEeCCC
Confidence 888877654433 2578899997653221 122334566777788877643 345999999999
Q ss_pred CCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 349 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 349 ~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
++.+++++++ ||+..+.++.|+.++|.+|++.++...++. .+.++..++..+.||+++||..+|+.|...|+++.
T Consensus 166 ~~~l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~~-~~~~~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~-- 242 (285)
T 3h4m_A 166 PDILDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNLA-EDVNLEEIAKMTEGCVGAELKAICTEAGMNAIREL-- 242 (285)
T ss_dssp GGGBCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHHCTTCCHHHHHHHHHHHHHHHHHTT--
T ss_pred chhcCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc--
Confidence 9999999999 999999999999999999999999877655 56689999999999999999999999999998763
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCCC--CCHHHHHHHHHHHHhhCC
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRPS--LNKSKWEELEQWNREFGS 472 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~ps--~~~~~~~~~~~w~~~~g~ 472 (473)
...|+.+||.+|++.+.+. .....-..+..|...||.
T Consensus 243 ---------~~~I~~~d~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (285)
T 3h4m_A 243 ---------RDYVTMDDFRKAVEKIMEKKKVKVKEPAHLDVLYRLEHH 281 (285)
T ss_dssp ---------CSSBCHHHHHHHHHHHHHHHCCC----------------
T ss_pred ---------cCcCCHHHHHHHHHHHHhccccccCCchHHHHHHHHhcc
Confidence 2469999999999987642 333345678899999986
No 19
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.98 E-value=1.7e-32 Score=288.20 Aligned_cols=259 Identities=34% Similarity=0.556 Sum_probs=210.4
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
++++|++|+|++.+++.|++++..|+.++++|..+ ..++.++|||||||||||++|+++|++++.+|+.++++++.+.+
T Consensus 199 ~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~~ 278 (489)
T 3hu3_A 199 NEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSKL 278 (489)
T ss_dssp TCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTSC
T ss_pred CCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhhh
Confidence 56899999999999999999999999999999877 46788999999999999999999999999999999999998888
Q ss_pred hhhhhhhhc-----------ceeeeeccccccc---cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHH
Q 012000 290 VGEGEKLVR-----------TLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDA 355 (473)
Q Consensus 290 ~g~~~~~~~-----------~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~a 355 (473)
+|+....++ .+++|||++.... ....+...++...|+..|++... ...++||+|||+++.|+++
T Consensus 279 ~g~~~~~~~~~f~~A~~~~p~iLfLDEId~l~~~~~~~~~~~~~~~~~~LL~~ld~~~~--~~~v~vIaaTn~~~~Ld~a 356 (489)
T 3hu3_A 279 AGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQ--RAHVIVMAATNRPNSIDPA 356 (489)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEESHHHHCBCTTSCCCHHHHHHHHHHHHHHHHSCT--TSCEEEEEEESCGGGBCGG
T ss_pred cchhHHHHHHHHHHHHhcCCcEEEecchhhhccccccccchHHHHHHHHHHHHhhcccc--CCceEEEEecCCccccCHH
Confidence 877654432 4778999976543 23456677899999999998753 4459999999999999999
Q ss_pred Hhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccc---
Q 012000 356 VLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILT--- 430 (473)
Q Consensus 356 l~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~--- 430 (473)
+++ ||...+++++|+.++|.+||+.++....+. .+.++..++..+.||+++||..||++|++.++++....+..
T Consensus 357 l~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l~-~~~~l~~la~~t~g~s~~dL~~L~~~A~~~a~r~~~~~i~~~~~ 435 (489)
T 3hu3_A 357 LRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLEDE 435 (489)
T ss_dssp GGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTTTTCCTTCS
T ss_pred HhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCCc-chhhHHHHHHHccCCcHHHHHHHHHHHHHHHHHhcccccccccc
Confidence 999 999999999999999999999999887665 56689999999999999999999999999999875432110
Q ss_pred ---cccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHH--HHHHhhCC
Q 012000 431 ---VKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELE--QWNREFGS 472 (473)
Q Consensus 431 ---~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~--~w~~~~g~ 472 (473)
........|+++||..|++.++|+..++-+..+. .|.+.+|-
T Consensus 436 ~~~~~~~~~~~vt~edf~~Al~~~~ps~~re~~~e~p~v~W~dig~~ 482 (489)
T 3hu3_A 436 TIDAEVMNSLAVTMDDFRWALSQSNPSALRETVVEVPQVTWEDIGGR 482 (489)
T ss_dssp SCCHHHHHHCCBCHHHHHHHHTSHHHHHHHGGGC-------------
T ss_pred ccchhhcccCcCCHHHHHHHHHhCCchhhhcccccCCCCCHHHcCCC
Confidence 0111224799999999999999988777655554 49999884
No 20
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.97 E-value=3.7e-34 Score=318.08 Aligned_cols=263 Identities=36% Similarity=0.652 Sum_probs=196.2
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.+...|.++|+|++|++++++.|.+++.+|+.++..+..+. .++.++|||||||||||+||+++|.+++.+|+.+++++
T Consensus 467 ~~~~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~ 546 (806)
T 1ypw_A 467 TVVEVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPE 546 (806)
T ss_dssp CCCCCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSS
T ss_pred hcccCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechH
Confidence 34567889999999999999999999999999998887764 56789999999999999999999999999999999999
Q ss_pred cchhhhhhhhhhhc-----------ceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEKLVR-----------TLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~~~~-----------~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+.++|+++.+..++ .+++|||++...... ......+++++||..|+++.. ..+++||+|||
T Consensus 547 l~~~~~g~~~~~i~~~f~~a~~~~p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~--~~~v~vI~tTN 624 (806)
T 1ypw_A 547 LLTMWFGESEANVREIFDKARQAAPCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMST--KKNVFIIGATN 624 (806)
T ss_dssp STTCCTTTSSHHHHHHHHHHHHHCSBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC--------CCBCCCCCB
T ss_pred hhhhhcCccHHHHHHHHHHHHhcCCeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccc--cCCeEEEEecC
Confidence 99999888765443 467799987643321 123567889999999998854 35699999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
+++.||++++| ||+..|++++|+.++|..||+.++.+.++. .+.++..|++.++|||++||.++|+.|+..|+++..
T Consensus 625 ~~~~ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~~-~~~~l~~la~~t~g~sgadi~~l~~~a~~~a~~~~~ 703 (806)
T 1ypw_A 625 RPDIIDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPVA-KDVDLEFLAKMTNGFSGADLTEICQRACKLAIRESI 703 (806)
T ss_dssp SCGGGSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----CCCCSCSCGGGSSSCCHHHHHHHHHHHHHHHSCC-
T ss_pred CcccCCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCCC-cccCHHHHHHhccccCHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999 999999999999999999999999887654 567888999999999999999999999999988753
Q ss_pred cccc--------------ccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHHHHHHhhC
Q 012000 426 TNIL--------------TVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELEQWNREFG 471 (473)
Q Consensus 426 ~~~~--------------~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~~w~~~~g 471 (473)
.... .......++|+++||.+|++.++|+++.++++.|++|.++|+
T Consensus 704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~a~~~~~~svs~~~~~~ye~~~~~~~ 763 (806)
T 1ypw_A 704 ESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSVSDNDIRKYEMFAQTLQ 763 (806)
T ss_dssp -----------------------CCTTTTTTSSCCCCCC---------------------
T ss_pred HHHHhhhhhhcccccccccccccccCccCHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHH
Confidence 2100 001123467999999999999999999999999999999875
No 21
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.97 E-value=8.4e-30 Score=265.90 Aligned_cols=230 Identities=35% Similarity=0.570 Sum_probs=191.6
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
.+.++|+||+|++++++.|++.+.. +..+..|... ..+++|+||+||||||||+||+++|.+++.+|+.++++++...
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~-l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~ 88 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEF-LKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVEL 88 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHH-HHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHH-hhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHH
Confidence 5789999999999999999998865 4566666655 4667899999999999999999999999999999999999888
Q ss_pred hhhhhhhhh-----------cceeeeecccccccc------CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 289 WVGEGEKLV-----------RTLFMIDSIMSTRMA------NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 289 ~~g~~~~~~-----------~~if~IDei~~~~~~------~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
++|.....+ +.+++|||++..... +.+....+.+++|+..|+++.. ..+++||++||+++.
T Consensus 89 ~~g~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~--~~~viVIaaTn~~~~ 166 (476)
T 2ce7_A 89 FVGVGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDS--KEGIIVMAATNRPDI 166 (476)
T ss_dssp CTTHHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCG--GGTEEEEEEESCGGG
T ss_pred HhcccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCC--CCCEEEEEecCChhh
Confidence 877654433 357889999775432 1233445778999999998753 346999999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
||++++| ||++.+.+++|+.++|..|++.++.+.++. ++.++..++..|+||+|+||.++|++|+..+.++.
T Consensus 167 Ld~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l~-~~v~l~~la~~t~G~sgadL~~lv~~Aal~A~~~~----- 240 (476)
T 2ce7_A 167 LDPALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPLA-EDVNLEIIAKRTPGFVGADLENLVNEAALLAAREG----- 240 (476)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----
T ss_pred hchhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCCc-chhhHHHHHHhcCCCcHHHHHHHHHHHHHHHHHcC-----
Confidence 9999998 999999999999999999999999887654 56679999999999999999999999999887641
Q ss_pred ccccccCCCCcHHHHHHHHHhhCCC
Q 012000 430 TVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~~ps 454 (473)
...|+.+||..|+.++.+.
T Consensus 241 ------~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 241 ------RDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp ------CSSBCHHHHHHHHHHHC--
T ss_pred ------CCeecHHHHHHHHHHHhcC
Confidence 2469999999999988653
No 22
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.97 E-value=8.3e-30 Score=246.31 Aligned_cols=232 Identities=34% Similarity=0.562 Sum_probs=187.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
+++++.+|+||+|++.+++.|.+.+.+ +..+..+... ..+++++||+||||||||++|+++|++++.+++.+++.++.
T Consensus 4 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~ 82 (257)
T 1lv7_A 4 EDQIKTTFADVAGCDEAKEEVAELVEY-LREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFV 82 (257)
T ss_dssp ECSSCCCGGGSCSCHHHHHHTHHHHHH-HHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSST
T ss_pred ccCCCCCHHHhcCcHHHHHHHHHHHHH-HhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHH
Confidence 467889999999999999999998765 5556655544 35678999999999999999999999999999999999887
Q ss_pred hhhhhhhhhhh-----------cceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 287 SKWVGEGEKLV-----------RTLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 287 ~~~~g~~~~~~-----------~~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
..+.+.....+ +.+++||+++...... ......+..+.++..+++... ..+++||++||.+
T Consensus 83 ~~~~~~~~~~~~~~~~~a~~~~~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~--~~~~~vI~~tn~~ 160 (257)
T 1lv7_A 83 EMFVGVGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEG--NEGIIVIAATNRP 160 (257)
T ss_dssp TSCCCCCHHHHHHHHHHHHTTCSEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCS--SSCEEEEEEESCT
T ss_pred HHhhhhhHHHHHHHHHHHHHcCCeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCccc--CCCEEEEEeeCCc
Confidence 76665543322 3477899986543321 122334678889999998753 4559999999999
Q ss_pred CCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccc
Q 012000 350 QELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTN 427 (473)
Q Consensus 350 ~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~ 427 (473)
+.++++++| ||++.+++++|+.++|.+|++.++...++. ++.++..++..++||+++||.++|+.|+..|.++.
T Consensus 161 ~~l~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~--- 236 (257)
T 1lv7_A 161 DVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPLA-PDIDAAIIARGTPGFSGADLANLVNEAALFAARGN--- 236 (257)
T ss_dssp TTSCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT---
T ss_pred hhCCHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCCC-ccccHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC---
Confidence 999999998 999999999999999999999999876654 56678899999999999999999999999987652
Q ss_pred ccccccccCCCCcHHHHHHHHHhhCCC
Q 012000 428 ILTVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 428 ~~~~~~~~~~~it~~df~~al~~~~ps 454 (473)
...|+.+||..|++.+...
T Consensus 237 --------~~~i~~~~~~~a~~~~~~~ 255 (257)
T 1lv7_A 237 --------KRVVSMVEFEKAKDKIMMG 255 (257)
T ss_dssp --------CSSBCHHHHHHHHHHHTTC
T ss_pred --------CCcccHHHHHHHHHHHhcC
Confidence 2569999999999987643
No 23
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=7.3e-30 Score=246.58 Aligned_cols=230 Identities=32% Similarity=0.524 Sum_probs=176.4
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW 289 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~ 289 (473)
|+++|++|+|++++++.|++.+.. +..++.|... ..+++++|||||||||||++|+++|++++.+++.++++++...+
T Consensus 1 ~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 79 (262)
T 2qz4_A 1 MGVSFKDVAGMHEAKLEVREFVDY-LKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVI 79 (262)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHH-HHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSS
T ss_pred CCCCHHHhCCHHHHHHHHHHHHHH-HHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhc
Confidence 578999999999999999998865 5556655544 35678999999999999999999999999999999999987766
Q ss_pred hhhhhhhh-----------cceeeeeccccccccCc-------chHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 290 VGEGEKLV-----------RTLFMIDSIMSTRMANE-------NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 290 ~g~~~~~~-----------~~if~IDei~~~~~~~~-------~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
.+.....+ +.+++|||++....... +......+..++..+++... ..+++||+|||.++.
T Consensus 80 ~~~~~~~~~~~~~~a~~~~~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~--~~~~~vi~~tn~~~~ 157 (262)
T 2qz4_A 80 GGLGAARVRSLFKEARARAPCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGT--TDHVIVLASTNRADI 157 (262)
T ss_dssp TTHHHHHHHHHHHHHHHTCSEEEEEECC-------------------CHHHHHHHHHHHTCCT--TCCEEEEEEESCGGG
T ss_pred cChhHHHHHHHHHHHHhcCCeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCC--CCCEEEEecCCChhh
Confidence 66544332 46788999977543211 12233566788888887643 456999999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChh-hHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGG-DLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 428 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~-~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~ 428 (473)
+|+++++ ||+..+++++|+.++|.+|++.++...++..+.. .+..++..+.||+++||..+|+.|+..++++.
T Consensus 158 ld~~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~~~~~~~~~~l~~~~~g~~~~~l~~l~~~a~~~a~~~~---- 233 (262)
T 2qz4_A 158 LDGALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLTQSSTFYSQRLAELTPGFSGADIANICNEAALHAAREG---- 233 (262)
T ss_dssp GGSGGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCCBTHHHHHHHHHHTCTTCCHHHHHHHHHHHHTC---------
T ss_pred cCHHHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCCcchhhHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHcC----
Confidence 9999999 9999999999999999999999999887765544 45889999999999999999999999887652
Q ss_pred cccccccCCCCcHHHHHHHHHhhCCC
Q 012000 429 LTVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 429 ~~~~~~~~~~it~~df~~al~~~~ps 454 (473)
...|+.+||..|++.+.++
T Consensus 234 -------~~~i~~~d~~~a~~~~~~~ 252 (262)
T 2qz4_A 234 -------HTSVHTLNFEYAVERVLAG 252 (262)
T ss_dssp ----------CCBCCHHHHHHHHHHH
T ss_pred -------CCCCCHHHHHHHHHHhccC
Confidence 2468899999999987654
No 24
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.96 E-value=1e-28 Score=259.18 Aligned_cols=230 Identities=35% Similarity=0.577 Sum_probs=189.3
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK 288 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~ 288 (473)
.++++|+||+|++++++.|++.+.. +..+..+... ...++|+||+||||||||+||++||.+++.+++.++++++...
T Consensus 25 ~~~~~f~dv~G~~~~k~~l~~lv~~-l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~ 103 (499)
T 2dhr_A 25 APKVTFKDVAGAEEAKEELKEIVEF-LKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 103 (499)
T ss_dssp CCCCCTTSSCSCHHHHHHHHHHHHH-HHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSS
T ss_pred CCCCCHHHcCCcHHHHHHHHHHHHH-hhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHh
Confidence 3789999999999999999998865 4555666554 3567899999999999999999999999999999999998877
Q ss_pred hhhhhhhhh-----------cceeeeecccccccc------CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 289 WVGEGEKLV-----------RTLFMIDSIMSTRMA------NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 289 ~~g~~~~~~-----------~~if~IDei~~~~~~------~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
+.+.....+ +.+++||+++..... .........+++++..|++... ...+++|++||+|+.
T Consensus 104 ~~g~~~~~v~~lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~--~~~viviAatn~p~~ 181 (499)
T 2dhr_A 104 FVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATNRPDI 181 (499)
T ss_dssp CTTHHHHHHHHHTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCS--SCCCEEEECCSCGGG
T ss_pred hhhhHHHHHHHHHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhccccc--CccEEEEEecCChhh
Confidence 766554333 357779999654321 1233445678899999998753 345899999999999
Q ss_pred CCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 352 LDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 352 Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
||++++| ||++.+.+++|+.++|.+||+.++....+. ++.++..||..|+||+|+||.++|++|+..+.++
T Consensus 182 LD~aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~l~-~dv~l~~lA~~t~G~~gadL~~lv~~Aa~~A~~~------ 254 (499)
T 2dhr_A 182 LDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAARE------ 254 (499)
T ss_dssp SCTTTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSCCC-CSSTTHHHHTTSCSCCHHHHHHHHHHHHHHHTTT------
T ss_pred cCcccccccccceEEecCCCCHHHHHHHHHHHHhcCCCC-hHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHh------
Confidence 9999998 999999999999999999999998765543 5667999999999999999999999999887553
Q ss_pred ccccccCCCCcHHHHHHHHHhhCCC
Q 012000 430 TVKANQLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~~ps 454 (473)
....|+++||..|+.++.+.
T Consensus 255 -----~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 255 -----GRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp -----CCSSCCSHHHHHHHHHHTTC
T ss_pred -----CCCccCHHHHHHHHHHHhcc
Confidence 12469999999999998765
No 25
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.96 E-value=2e-28 Score=236.17 Aligned_cols=229 Identities=35% Similarity=0.585 Sum_probs=179.7
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
.++...|+++|+||+|+++++..+++.+... ..+..+... ...++|++|+||||||||+|++++|..++..++.+++.
T Consensus 5 ~~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~ 83 (254)
T 1ixz_A 5 SVLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGS 83 (254)
T ss_dssp ---CCCCSCCGGGCCSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccccCCCCCCHHHhCCcHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHH
Confidence 4567789999999999999999999987653 445555544 35567899999999999999999999999999999987
Q ss_pred ccchhhhhhhhhh-----------hcceeeeecccccccc------CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec
Q 012000 284 SLTSKWVGEGEKL-----------VRTLFMIDSIMSTRMA------NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT 346 (473)
Q Consensus 284 ~l~~~~~g~~~~~-----------~~~if~IDei~~~~~~------~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT 346 (473)
++...+.+..... ...++.+|+++..... ..........+.++..|++... ...++++++|
T Consensus 84 ~~~~~~~~~~~~~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~--~~~~i~~a~t 161 (254)
T 1ixz_A 84 DFVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAAT 161 (254)
T ss_dssp HHHHSCTTHHHHHHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCT--TCCEEEEEEE
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCC--CCCEEEEEcc
Confidence 7755544433222 2357778998643221 1223345677888999987753 3458999999
Q ss_pred CCCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 347 NKPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 347 n~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
|.|+.||++++| ||++.++++.|+.++|.+||+.++....+. ++.++..+|..++||+|+||.++|++|+..+.++.
T Consensus 162 ~~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~ 240 (254)
T 1ixz_A 162 NRPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG 240 (254)
T ss_dssp SCGGGSCGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred CCchhCCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 999999999999 899999999999999999999988765443 45679999999999999999999999998887641
Q ss_pred cccccccccccCCCCcHHHHHHHH
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAM 448 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al 448 (473)
...|+.+||.+|+
T Consensus 241 -----------~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 241 -----------RRKITMKDLEEAA 253 (254)
T ss_dssp -----------CSSBCHHHHHHHT
T ss_pred -----------CCCcCHHHHHHHh
Confidence 2469999999886
No 26
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.95 E-value=4.3e-30 Score=249.63 Aligned_cols=238 Identities=34% Similarity=0.555 Sum_probs=187.9
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
.+.|+++|++|+|++.+++.|++.+.. +..++.|... ..+++++|||||||||||++|+++|.+++.+++.+++.++.
T Consensus 3 ~~~~~~~~~~i~G~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~ 81 (268)
T 2r62_A 3 AEKPNVRFKDMAGNEEAKEEVVEIVDF-LKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFI 81 (268)
T ss_dssp CCCCCCCSTTSSSCTTTHHHHHHHHHH-HHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTT
T ss_pred ccCCCCCHHHhCCcHHHHHHHHHHHHH-HHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHH
Confidence 456889999999999999999998764 6667766654 35678999999999999999999999999999999998887
Q ss_pred hhhhhhhhhh-----------hcceeeeeccccccccCc-------chHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 287 SKWVGEGEKL-----------VRTLFMIDSIMSTRMANE-------NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 287 ~~~~g~~~~~-----------~~~if~IDei~~~~~~~~-------~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
..+.+..... -..+++|||++....... +......++.++..+++... ...+++||+|||.
T Consensus 82 ~~~~~~~~~~~~~~~~~a~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~-~~~~v~vi~ttn~ 160 (268)
T 2r62_A 82 EMFVGLGASRVRDLFETAKKQAPSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGS-ENAPVIVLAATNR 160 (268)
T ss_dssp TSCSSSCSSSSSTTHHHHHHSCSCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSC-SCSCCEEEECBSC
T ss_pred HhhcchHHHHHHHHHHHHHhcCCeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCccc-CCCCEEEEEecCC
Confidence 7666544322 236888999976543211 11112345667777776643 2445899999999
Q ss_pred CCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 349 PQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 349 ~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
++.+|+++++ ||+..+++++|+.++|..+|+.++....+. ++.++..|+..+.||+|+||.++|+.|+..+.++
T Consensus 161 ~~~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~g~~g~dl~~l~~~a~~~a~~~--- 236 (268)
T 2r62_A 161 PEILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKLA-NDVNLQEVAKLTAGLAGADLANIINEAALLAGRN--- 236 (268)
T ss_dssp CTTSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCCC-SSCCTTTTTSSSCSSCHHHHHHHHHHHHHTTSSS---
T ss_pred chhcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHh---
Confidence 9999999999 999999999999999999999999876554 5567888999999999999999999999887432
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCCCCCHHH
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRPSLNKSK 459 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~ 459 (473)
....|+.+||..|+..+.|+...+.
T Consensus 237 --------~~~~i~~~~~~~a~~~~~~~~~~~~ 261 (268)
T 2r62_A 237 --------NQKEVRQQHLKEAVERGIAGLEKKL 261 (268)
T ss_dssp --------CCCSCCHHHHHTSCTTCCCCCC---
T ss_pred --------ccCCcCHHHHHHHHHHHhhcchhhh
Confidence 1256999999999999998876643
No 27
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.95 E-value=4.8e-27 Score=229.82 Aligned_cols=228 Identities=35% Similarity=0.587 Sum_probs=178.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGL-RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
++...|+++|+||+|++++++.+++.+... ..+..+... ...++|++|+||||||||+|+++++..++..++.+++.+
T Consensus 30 ~~~~~~~~~~~~i~g~~~~~~~l~~l~~~~-~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~ 108 (278)
T 1iy2_A 30 VLTEAPKVTFKDVAGAEEAKEELKEIVEFL-KNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSD 108 (278)
T ss_dssp CBCCCCCCCGGGSSSCHHHHHHHHHHHHHH-HCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCCCCHHHhCChHHHHHHHHHHHHHH-HCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHH
Confidence 445568899999999999999999887653 344445444 345678999999999999999999999999999999877
Q ss_pred cchhhhhhhhh-----------hhcceeeeecccccccc------CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecC
Q 012000 285 LTSKWVGEGEK-----------LVRTLFMIDSIMSTRMA------NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATN 347 (473)
Q Consensus 285 l~~~~~g~~~~-----------~~~~if~IDei~~~~~~------~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn 347 (473)
+...+.+.... ....++.+|+++..... ............++..+++... ...++++++||
T Consensus 109 ~~~~~~~~~~~~i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~--~~~~i~~a~t~ 186 (278)
T 1iy2_A 109 FVEMFVGVGAARVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEK--DTAIVVMAATN 186 (278)
T ss_dssp HHHSTTTHHHHHHHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCT--TCCEEEEEEES
T ss_pred HHHHHhhHHHHHHHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCC--CCCEEEEEecC
Confidence 65544433222 22357778998643211 1123345667888888887653 34589999999
Q ss_pred CCCCCCHHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 348 KPQELDDAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 348 ~~~~Ld~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
.|+.||++++| ||+..+++++|+.++|.+||+.++....+. ++.++..++..++||+++||.++|++|+..+.++-
T Consensus 187 ~p~~ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~~-~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~- 264 (278)
T 1iy2_A 187 RPDILDPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPLA-EDVDLALLAKRTPGFVGADLENLLNEAALLAAREG- 264 (278)
T ss_dssp CTTSSCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCBC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-
T ss_pred CchhCCHhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-
Confidence 99999999998 999999999999999999999988765443 45679999999999999999999999998886541
Q ss_pred ccccccccccCCCCcHHHHHHHH
Q 012000 426 TNILTVKANQLRPLRYEDFQKAM 448 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al 448 (473)
...|+.+||.+|+
T Consensus 265 ----------~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 265 ----------RRKITMKDLEEAA 277 (278)
T ss_dssp ----------CCSBCHHHHHHHT
T ss_pred ----------CCCcCHHHHHHHh
Confidence 2469999999886
No 28
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.92 E-value=3.5e-25 Score=246.03 Aligned_cols=245 Identities=35% Similarity=0.558 Sum_probs=204.5
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCC-CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLR-RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~-~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
..++++|+||+|++.+++.|++++.+|+.++++|..+. .++.++||+||||||||+||+++|.+++.+++.+++.++.+
T Consensus 197 ~~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~ 276 (806)
T 1ypw_A 197 SLNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSS
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhh
Confidence 45679999999999999999999999999999999874 67889999999999999999999999999999999999888
Q ss_pred hhhhhhhhhh-----------cceeeeeccccccc---cCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCC
Q 012000 288 KWVGEGEKLV-----------RTLFMIDSIMSTRM---ANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELD 353 (473)
Q Consensus 288 ~~~g~~~~~~-----------~~if~IDei~~~~~---~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld 353 (473)
.+.++.+..+ ..+++|||++.... ....+...++...++..+++.... ..+++|++||+++.+|
T Consensus 277 ~~~g~~~~~l~~vf~~a~~~~p~il~iDEid~l~~~~~~~~~~~~~~~~~~Ll~ll~g~~~~--~~v~vI~atn~~~~ld 354 (806)
T 1ypw_A 277 KLAGESESNLRKAFEEAEKNAPAIIFIDELDAIAPKREKTHGEVERRIVSQLLTLMDGLKQR--AHVIVMAATNRPNSID 354 (806)
T ss_dssp SSTTHHHHHHHHHHHHHHHHCSEEEEEESGGGTSCTTSCCCSHHHHHHHHHHHHHHHSSCTT--SCCEEEEECSCTTTSC
T ss_pred hhhhhHHHHHHHHHHHHHhcCCcEEEeccHHHhhhccccccchHHHHHHHHHHHHhhhhccc--ccEEEecccCCchhcC
Confidence 8777665544 34677999976543 234556678889999999988643 4589999999999999
Q ss_pred HHHhc--ccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc--
Q 012000 354 DAVLR--RLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL-- 429 (473)
Q Consensus 354 ~al~r--Rf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~-- 429 (473)
+++++ ||+..+.++.|+.++|.++++.++....+. .+.++..++..+.||+++|+..+|..|+..++++......
T Consensus 355 ~al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l~-~~~~l~~la~~t~g~~g~dl~~l~~ea~~~a~r~~~~~i~~~ 433 (806)
T 1ypw_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKLA-DDVDLEQVANETHGHVGADLAALCSEAALQAIRKKMDLIDLE 433 (806)
T ss_dssp TTTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCCC-TTCCTHHHHHSCSSCCHHHHHHHHHHHHHHHHHHTTTTTSCH
T ss_pred HHHhcccccccccccCCCCHHHHHHHHHHHHhcCCCc-ccchhHHHHHhhcCcchHHHHHHHHHHHHHHHhhhccccchh
Confidence 99998 999999999999999999999998876654 5668999999999999999999999999998886433110
Q ss_pred ----ccccccCCCCcHHHHHHHHHhhCCCCC
Q 012000 430 ----TVKANQLRPLRYEDFQKAMAVIRPSLN 456 (473)
Q Consensus 430 ----~~~~~~~~~it~~df~~al~~~~ps~~ 456 (473)
.........++.+||..++....|+..
T Consensus 434 ~~~~~~~~~~~~~v~~~d~~~al~~~~~s~~ 464 (806)
T 1ypw_A 434 DETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (806)
T ss_dssp HHHCCHHHHTTCCCCTTHHHHHHHHSCCCCC
T ss_pred hhccchhhhhhhhhhhhhhhccccccCchhh
Confidence 011123356889999999999887644
No 29
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.88 E-value=1.6e-22 Score=199.36 Aligned_cols=159 Identities=18% Similarity=0.210 Sum_probs=118.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhh---------------cceeeeecccccc
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLV---------------RTLFMIDSIMSTR 310 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~---------------~~if~IDei~~~~ 310 (473)
..+|+++|||||||||||+||+++|++++.+|+.++++++.+.|+|.....+ +.+++|||++...
T Consensus 33 ~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i~~~f~~a~~~~~~~~~~vl~iDEiD~~~ 112 (293)
T 3t15_A 33 IKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLIRQRYREAAEIIRKGNMCCLFINDLDAGA 112 (293)
T ss_dssp CCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHHHHHHHHHHHHHTTSSCCCEEEECCC---
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHHHHHHHHHHHHHhcCCCeEEEEechhhhc
Confidence 4567899999999999999999999999999999999999888887765433 4678899997654
Q ss_pred ccCc-----chHHHHHHHHHHHHhcCcC---------CCCCCcEEEEeecCCCCCCCHHHhc--ccccccccCCCcHHHH
Q 012000 311 MANE-----NDASRRLKSEFLIQFDGVT---------SNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPLPDENVR 374 (473)
Q Consensus 311 ~~~~-----~~~~~~~~~~ll~~ldg~~---------~~~~~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~P~~~~r 374 (473)
.... ......+.+.|+..||+.. .....+++||+|||.++.||++++| ||+..++ .|+.++|
T Consensus 113 ~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~~~~ld~al~R~~R~d~~i~--~P~~~~r 190 (293)
T 3t15_A 113 GRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGNDFSTLYAPLIRDGRMEKFYW--APTREDR 190 (293)
T ss_dssp -----------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSSCCC--CHHHHHHHEEEEEE--CCCHHHH
T ss_pred CCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCCcccCCHHHhCCCCCceeEe--CcCHHHH
Confidence 4211 1123456788888887553 1123569999999999999999997 9998776 5799999
Q ss_pred HHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHH
Q 012000 375 RLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQA 411 (473)
Q Consensus 375 ~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~ 411 (473)
.+|++.++...++ ++..++..++||++++|..
T Consensus 191 ~~Il~~~~~~~~~-----~~~~l~~~~~~~~~~~l~~ 222 (293)
T 3t15_A 191 IGVCTGIFRTDNV-----PAEDVVKIVDNFPGQSIDF 222 (293)
T ss_dssp HHHHHHHHGGGCC-----CHHHHHHHHHHSCSCCHHH
T ss_pred HHHHHHhccCCCC-----CHHHHHHHhCCCCcccHHH
Confidence 9999998876443 4677888888999888753
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.87 E-value=2.2e-21 Score=196.45 Aligned_cols=209 Identities=16% Similarity=0.200 Sum_probs=158.3
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC--cEEEEecCccchhh
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSLTSKW 289 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--~~~~v~~~~l~~~~ 289 (473)
..+|++++|.+.+++.+..++.. ......+++++||+||||||||++|+++|++++. +++.+++..+...+
T Consensus 40 ~~~~~~ivG~~~~~~~l~~l~~~-------~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 112 (368)
T 3uk6_A 40 RQASQGMVGQLAARRAAGVVLEM-------IREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLE 112 (368)
T ss_dssp CSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSS
T ss_pred CcchhhccChHHHHHHHHHHHHH-------HHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcc
Confidence 34599999999999987765532 1223344689999999999999999999999874 78888766533222
Q ss_pred hhhhh-----------------------------------------------------hh----------------hcce
Q 012000 290 VGEGE-----------------------------------------------------KL----------------VRTL 300 (473)
Q Consensus 290 ~g~~~-----------------------------------------------------~~----------------~~~i 300 (473)
.+..+ .. .+.+
T Consensus 113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~v 192 (368)
T 3uk6_A 113 MSKTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGV 192 (368)
T ss_dssp SCHHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCE
T ss_pred cchhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCce
Confidence 11100 00 0248
Q ss_pred eeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec-----------CCCCCCCHHHhcccccccccCCC
Q 012000 301 FMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT-----------NKPQELDDAVLRRLVKRIYVPLP 369 (473)
Q Consensus 301 f~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT-----------n~~~~Ld~al~rRf~~~i~~~~P 369 (473)
++|||++... ....+.|+..++.. ..+++++++. |.+..+++++++||.. +.|++|
T Consensus 193 l~IDEi~~l~--------~~~~~~L~~~le~~----~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~~-i~~~~~ 259 (368)
T 3uk6_A 193 LFIDEVHMLD--------IESFSFLNRALESD----MAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLLI-VSTTPY 259 (368)
T ss_dssp EEEESGGGSB--------HHHHHHHHHHTTCT----TCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEEE-EEECCC
T ss_pred EEEhhccccC--------hHHHHHHHHHhhCc----CCCeeeeecccceeeeeccCCCCcccCCHHHHhhccE-EEecCC
Confidence 8999995442 34556677766532 3345555554 4578899999999987 799999
Q ss_pred cHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHH
Q 012000 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 370 ~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~ 449 (473)
+.+++..+++..+...++.++++.+..|+..+.+.+++++.++|+.|+..|..+ ....|+.+|+.+++.
T Consensus 260 ~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~-----------~~~~It~~~v~~a~~ 328 (368)
T 3uk6_A 260 SEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKR-----------KGTEVQVDDIKRVYS 328 (368)
T ss_dssp CHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh-----------CCCCCCHHHHHHHHH
Confidence 999999999999998888899999999999999458999999999999887554 235799999999998
Q ss_pred hh
Q 012000 450 VI 451 (473)
Q Consensus 450 ~~ 451 (473)
.+
T Consensus 329 ~~ 330 (368)
T 3uk6_A 329 LF 330 (368)
T ss_dssp HS
T ss_pred Hh
Confidence 74
No 31
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.86 E-value=5.4e-22 Score=196.16 Aligned_cols=226 Identities=17% Similarity=0.198 Sum_probs=167.2
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhc----CCCCCceEEEEcCCCCcHHHHHHHHHHHc-------CCcEEEEecCc
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTG----LRRPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSASS 284 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~----~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~~~~~v~~~~ 284 (473)
.+|+|++++++.|.+++..+.. +..+.. ...+..++||+||||||||++|+++|+.+ ..+++.+++.+
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~-~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~ 109 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLV-ERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDD 109 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHH-HHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGG
T ss_pred HHccChHHHHHHHHHHHHHHHh-HHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHH
Confidence 3899999999999999886553 332221 13455689999999999999999999987 34899999999
Q ss_pred cchhhhhhhhhhh--------cceeeeeccccccccC-cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC-----
Q 012000 285 LTSKWVGEGEKLV--------RTLFMIDSIMSTRMAN-ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ----- 350 (473)
Q Consensus 285 l~~~~~g~~~~~~--------~~if~IDei~~~~~~~-~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~----- 350 (473)
+...+++.....+ ..+++|||++...... ...........|+..|+.. ..+++||++||.+.
T Consensus 110 l~~~~~g~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~Ll~~l~~~----~~~~~~i~~~~~~~~~~~~ 185 (309)
T 3syl_A 110 LVGQYIGHTAPKTKEVLKRAMGGVLFIDEAYYLYRPDNERDYGQEAIEILLQVMENN----RDDLVVILAGYADRMENFF 185 (309)
T ss_dssp TCCSSTTCHHHHHHHHHHHHTTSEEEEETGGGSCCCC---CCTHHHHHHHHHHHHHC----TTTCEEEEEECHHHHHHHH
T ss_pred hhhhcccccHHHHHHHHHhcCCCEEEEEChhhhccCCCcccccHHHHHHHHHHHhcC----CCCEEEEEeCChHHHHHHH
Confidence 9888877554322 4688899998654321 1233456778888888743 34578888887654
Q ss_pred CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc-------CCCCHHHHHHHHHHHHHHhHHH
Q 012000 351 ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET-------EGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 351 ~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t-------~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
.+++++++||+.+++|+.|+.+++..|++.++...++.++++.+..++... ...+++++.++++.|+..+..+
T Consensus 186 ~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~gn~r~l~~~l~~a~~~~~~r 265 (309)
T 3syl_A 186 QSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNYQMTPEAETALRAYIGLRRNQPHFANARSIRNALDRARLRQANR 265 (309)
T ss_dssp HHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHTTSSSCCHHHHHHHHHHHHHHHHHHH
T ss_pred hhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhccCCCCCcHHHHHHHHHHHHHHHHHH
Confidence 357999999999999999999999999999999988888999999998863 2335899999999999887776
Q ss_pred hccc-ccccccccCCCCcHHHHHH
Q 012000 424 LGTN-ILTVKANQLRPLRYEDFQK 446 (473)
Q Consensus 424 ~~~~-~~~~~~~~~~~it~~df~~ 446 (473)
+... ...........|+.+||..
T Consensus 266 ~~~~~~~~~~~~~l~~i~~~d~~~ 289 (309)
T 3syl_A 266 LFTASSGPLDARALSTIAEEDIRA 289 (309)
T ss_dssp HHHC---CEEHHHHHEECHHHHHT
T ss_pred HHhccCCCCCHHHHhhccHHHhcc
Confidence 5431 1111112234466666665
No 32
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.86 E-value=2e-20 Score=187.49 Aligned_cols=220 Identities=14% Similarity=0.135 Sum_probs=165.4
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
...+++++.+|++++|.+.+++.|..++..... ...++.++||+||||||||++|+++|++++.+|+.+++..
T Consensus 18 ~~~~~~~p~~~~~iiG~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~ 90 (338)
T 3pfi_A 18 TYETSLRPSNFDGYIGQESIKKNLNVFIAAAKK-------RNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPM 90 (338)
T ss_dssp -----CCCCSGGGCCSCHHHHHHHHHHHHHHHH-------TTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred hhhhccCCCCHHHhCChHHHHHHHHHHHHHHHh-------cCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchh
Confidence 345677888999999999999999998864321 1234578999999999999999999999999999999876
Q ss_pred cchhhhhhhh-----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC--------------CCCCcEEEEee
Q 012000 285 LTSKWVGEGE-----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS--------------NPNDLVIVMGA 345 (473)
Q Consensus 285 l~~~~~g~~~-----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~--------------~~~~~v~vI~t 345 (473)
+.. .+... ..-..+++|||++... ......|+..++.... ....++++|++
T Consensus 91 ~~~--~~~~~~~~~~~~~~~vl~lDEi~~l~--------~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~a 160 (338)
T 3pfi_A 91 IEK--SGDLAAILTNLSEGDILFIDEIHRLS--------PAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGA 160 (338)
T ss_dssp CCS--HHHHHHHHHTCCTTCEEEEETGGGCC--------HHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEE
T ss_pred ccc--hhHHHHHHHhccCCCEEEEechhhcC--------HHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEe
Confidence 532 11111 1235688899995443 3445556666653321 00114899999
Q ss_pred cCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhc
Q 012000 346 TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELG 425 (473)
Q Consensus 346 Tn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~ 425 (473)
||....+++++++||+..+.++.|+.+++..++..++...++.++++.+..|+..+.| ..+.+.++++.+...+...
T Consensus 161 tn~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~-- 237 (338)
T 3pfi_A 161 TTRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNKTCEEKAALEIAKRSRS-TPRIALRLLKRVRDFADVN-- 237 (338)
T ss_dssp ESCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCEECHHHHHHHHHTTTT-CHHHHHHHHHHHHHHHHHT--
T ss_pred CCCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHCc-CHHHHHHHHHHHHHHHHhh--
Confidence 9999999999999998889999999999999999999988888889999999997777 6788999999887665332
Q ss_pred ccccccccccCCCCcHHHHHHHHHhhCC
Q 012000 426 TNILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 426 ~~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
....|+.+++..++.....
T Consensus 238 ---------~~~~i~~~~~~~~~~~~~~ 256 (338)
T 3pfi_A 238 ---------DEEIITEKRANEALNSLGV 256 (338)
T ss_dssp ---------TCSEECHHHHHHHHHHHTC
T ss_pred ---------cCCccCHHHHHHHHHHhCC
Confidence 1234777888877776554
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.84 E-value=9.6e-20 Score=181.06 Aligned_cols=236 Identities=19% Similarity=0.186 Sum_probs=169.7
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
.++++.+|++++|.+.+++.|.+++..... ...++.++||+||||||||++|++++++++.+++.+++..+..
T Consensus 4 ~~~~p~~~~~~ig~~~~~~~l~~~l~~~~~-------~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~ 76 (324)
T 1hqc_A 4 LALRPKTLDEYIGQERLKQKLRVYLEAAKA-------RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK 76 (324)
T ss_dssp -CCCCCSTTTCCSCHHHHHHHHHHHHHHHH-------HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS
T ss_pred cccCcccHHHhhCHHHHHHHHHHHHHHHHc-------cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC
Confidence 356788999999999999999988753211 1234578999999999999999999999999999998876532
Q ss_pred --hhhhhhhh--hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----CC---------CCCcEEEEeecCCC
Q 012000 288 --KWVGEGEK--LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SN---------PNDLVIVMGATNKP 349 (473)
Q Consensus 288 --~~~g~~~~--~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~~---------~~~~v~vI~tTn~~ 349 (473)
...+.... .-..+++|||++... ......++..++... .. ...++++|++||.+
T Consensus 77 ~~~l~~~l~~~~~~~~~l~lDEi~~l~--------~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~t~~~ 148 (324)
T 1hqc_A 77 PGDLAAILANSLEEGDILFIDEIHRLS--------RQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGATTRP 148 (324)
T ss_dssp HHHHHHHHTTTCCTTCEEEETTTTSCC--------HHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEEESCC
T ss_pred hHHHHHHHHHhccCCCEEEEECCcccc--------cchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEeCCCc
Confidence 12222221 235688899995443 223344444444221 00 01247899999999
Q ss_pred CCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccc
Q 012000 350 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNIL 429 (473)
Q Consensus 350 ~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~ 429 (473)
..+++++++||...+.++.|+.+++..++..++...+..++++.+..|+..+.| .++.+.++++.+...+...
T Consensus 149 ~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~l~~~l~~~~~~a~~~------ 221 (324)
T 1hqc_A 149 GLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGVRITEEAALEIGRRSRG-TMRVAKRLFRRVRDFAQVA------ 221 (324)
T ss_dssp SSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHSCS-CHHHHHHHHHHHTTTSTTT------
T ss_pred ccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh------
Confidence 999999999998889999999999999999999888888899999999999987 5788999988876554211
Q ss_pred ccccccCCCCcHHHHHHHHHhhCCC---CCHHHHHHHHHHHHhh
Q 012000 430 TVKANQLRPLRYEDFQKAMAVIRPS---LNKSKWEELEQWNREF 470 (473)
Q Consensus 430 ~~~~~~~~~it~~df~~al~~~~ps---~~~~~~~~~~~w~~~~ 470 (473)
....|+.+++..++...... ....+.+.+....+.|
T Consensus 222 -----~~~~i~~~~~~~~~~~~~~~~~~l~~~e~~~i~~~~~~~ 260 (324)
T 1hqc_A 222 -----GEEVITRERALEALAALGLDELGLEKRDREILEVLILRF 260 (324)
T ss_dssp -----SCSCCCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred -----cCCCCCHHHHHHHHHHhcccccCCCHHHHHHHHHHHHHh
Confidence 12457788888777765432 3333334444444444
No 34
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.83 E-value=4.4e-20 Score=181.98 Aligned_cols=232 Identities=17% Similarity=0.247 Sum_probs=164.0
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcC--CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhh
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGL--RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~--~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~ 292 (473)
++|+|++++++.|...+..+.....+.... ..++.++||+||||||||++|+++|+.++.+++.++++.+.. .+++.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 468999999999999887654333322111 234678999999999999999999999999999999987754 33332
Q ss_pred h----------------hh-hhcceeeeeccccccccC----cchHHHHHHHHHHHHhcCcCC------CCCCcEEEEee
Q 012000 293 G----------------EK-LVRTLFMIDSIMSTRMAN----ENDASRRLKSEFLIQFDGVTS------NPNDLVIVMGA 345 (473)
Q Consensus 293 ~----------------~~-~~~~if~IDei~~~~~~~----~~~~~~~~~~~ll~~ldg~~~------~~~~~v~vI~t 345 (473)
. .. .-..+++|||++...... .......+.+.|+..+++... ....+++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 1 00 125788899998766443 222223346778888875411 01235788888
Q ss_pred ----cCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHH-----------hccCC--CCCChhhHHHHHHHcC------
Q 012000 346 ----TNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHK-----------LKGQA--FSLPGGDLERLVRETE------ 402 (473)
Q Consensus 346 ----Tn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~-----------l~~~~--~~l~~~~l~~La~~t~------ 402 (473)
++.+..+++++++||+..+.|+.|+.+++..|++.. +...+ +.++++.++.|+..+.
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~ 254 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKT 254 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHHTTCEEEECHHHHHHHHHHHHHHHHHS
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHHHHHhcCCeeccCHHHHHHHHHHhhhhcccc
Confidence 567889999999999988999999999999999831 11223 4578999999998873
Q ss_pred -CCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 403 -GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 403 -g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+...+.+.++++.+...+..+... .......|+.+|+.+++....
T Consensus 255 ~~g~~R~l~~~l~~~~~~~~~~~~~-----~~~~~~~i~~~~v~~~l~~~~ 300 (310)
T 1ofh_A 255 ENIGARRLHTVMERLMDKISFSASD-----MNGQTVNIDAAYVADALGEVV 300 (310)
T ss_dssp CCCTTHHHHHHHHHHSHHHHHHGGG-----CTTCEEEECHHHHHHHTCSSS
T ss_pred cccCcHHHHHHHHHHHHhhhcCCcc-----ccCCEEEEeeHHHHHHHHhhh
Confidence 458899999999887665433211 111122499999999997653
No 35
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.81 E-value=1.1e-18 Score=162.30 Aligned_cols=200 Identities=16% Similarity=0.148 Sum_probs=151.3
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
+++++..|++++|.+.+++.|.+++... ...++||+||||||||++|+++++++ ...++.+++
T Consensus 9 ~~~~p~~~~~~~g~~~~~~~l~~~l~~~------------~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~ 76 (226)
T 2chg_A 9 EKYRPRTLDEVVGQDEVIQRLKGYVERK------------NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNA 76 (226)
T ss_dssp HHTSCSSGGGCCSCHHHHHHHHHHHHTT------------CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEET
T ss_pred HhcCCCCHHHHcCcHHHHHHHHHHHhCC------------CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEecc
Confidence 4577899999999999999999888521 12359999999999999999999975 456888887
Q ss_pred Cccchhh-----hhhhh------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 283 SSLTSKW-----VGEGE------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 283 ~~l~~~~-----~g~~~------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
....... ..... ..-+.++.||+++... ......++..++.. ..++.+|++||.+..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~l~~~l~~~----~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 77 SDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEMY----SKSCRFILSCNYVSR 144 (226)
T ss_dssp TCTTCHHHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC--------HHHHHHHHHHHHHT----TTTEEEEEEESCGGG
T ss_pred ccccChHHHHHHHHHHhcccCCCccCceEEEEeChhhcC--------HHHHHHHHHHHHhc----CCCCeEEEEeCChhh
Confidence 6543211 11110 1234678899995443 22344555555532 334788889999999
Q ss_pred CCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhccccccc
Q 012000 352 LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTV 431 (473)
Q Consensus 352 Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~ 431 (473)
+++++.+||. .+.+++|+.++...++..++...+..+++..+..|+..+.| ..+.+.++++.++..+
T Consensus 145 ~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~~----------- 211 (226)
T 2chg_A 145 IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAAAIG----------- 211 (226)
T ss_dssp SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHHHTC-----------
T ss_pred cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHHhcC-----------
Confidence 9999999998 79999999999999999998877778889999999999888 6777777777665442
Q ss_pred ccccCCCCcHHHHHHHHH
Q 012000 432 KANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 432 ~~~~~~~it~~df~~al~ 449 (473)
..|+.+|+.+++.
T Consensus 212 -----~~I~~~~v~~~~~ 224 (226)
T 2chg_A 212 -----EVVDADTIYQITA 224 (226)
T ss_dssp -----SCBCHHHHHHHHH
T ss_pred -----ceecHHHHHHHhc
Confidence 3699999999875
No 36
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.80 E-value=3.3e-19 Score=185.39 Aligned_cols=216 Identities=20% Similarity=0.263 Sum_probs=156.0
Q ss_pred ccccCCCCCCcccccChHHHH---HHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 205 AIVDRSPSVKWEDVAGLEKAK---QALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k---~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.+.++.+|.+|++++|+++++ ..|...+.. .. ..++|||||||||||++|++||+.++.+|+.++
T Consensus 15 pla~r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-----------~~-~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 15 PLAARMRPENLAQYIGQQHLLAAGKPLPRAIEA-----------GH-LHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHSTTSHHHHHHHH-----------TC-CCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred ChHHHhCCCCHHHhCCcHHHHhchHHHHHHHHc-----------CC-CcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 344567889999999999999 777777742 11 258999999999999999999999999999999
Q ss_pred cCccchhhhhh----hh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeec--CCCCC
Q 012000 282 ASSLTSKWVGE----GE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGAT--NKPQE 351 (473)
Q Consensus 282 ~~~l~~~~~g~----~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tT--n~~~~ 351 (473)
+.......+.. .. ..-+.+++|||++..... ....|+..++. ..+++|++| |....
T Consensus 83 a~~~~~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~~--------~q~~LL~~le~------~~v~lI~att~n~~~~ 148 (447)
T 3pvs_A 83 AVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKS--------QQDAFLPHIED------GTITFIGATTENPSFE 148 (447)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHTTCCEEEEEETTTCC--------------CCHHHHHT------TSCEEEEEESSCGGGS
T ss_pred eccCCHHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCHH--------HHHHHHHHHhc------CceEEEecCCCCcccc
Confidence 76543322211 11 112578899999665432 34456666653 236666666 55568
Q ss_pred CCHHHhcccccccccCCCcHHHHHHHHHHHhcc-------CCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 352 LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG-------QAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 352 Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~-------~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
+++++++||. ++.++.|+.+++..++..++.. .++.++++.++.|+..+.| ..+.+.++++.++..+...
T Consensus 149 l~~aL~sR~~-v~~l~~l~~edi~~il~~~l~~~~~~~~~~~~~i~~~al~~L~~~~~G-d~R~lln~Le~a~~~a~~~- 225 (447)
T 3pvs_A 149 LNSALLSRAR-VYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNG-DARRALNTLEMMADMAEVD- 225 (447)
T ss_dssp SCHHHHTTEE-EEECCCCCHHHHHHHHHHHHHCTTTSSTTSSEECCHHHHHHHHHHHCS-CHHHHHHHHHHHHHHSCBC-
T ss_pred cCHHHhCcee-EEeeCCcCHHHHHHHHHHHHHHHhhhhccccCcCCHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccc-
Confidence 9999999997 4779999999999999999876 5566789999999999888 6788888888887654110
Q ss_pred cccccccccccCCCCcHHHHHHHHHhhCCCCCH
Q 012000 425 GTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK 457 (473)
Q Consensus 425 ~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~ 457 (473)
......||.+++.+++....+.+.+
T Consensus 226 --------~~~~~~It~e~v~~~l~~~~~~~dk 250 (447)
T 3pvs_A 226 --------DSGKRVLKPELLTEIAGERSARFDN 250 (447)
T ss_dssp --------TTSCEECCHHHHHHHHTCCCCC---
T ss_pred --------cCCCCccCHHHHHHHHhhhhhccCC
Confidence 0122469999999999876655544
No 37
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.80 E-value=1.5e-18 Score=181.30 Aligned_cols=233 Identities=17% Similarity=0.196 Sum_probs=163.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC--CcEEEEecCccchh
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSASSLTSK 288 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~v~~~~l~~~ 288 (473)
|...|++|+|++++++.+.+++.. +.....+++++|||||||||||++|+++|++++ .+|+.++++++.++
T Consensus 32 ~~~~~~~iiG~~~~~~~l~~~~~~-------~~~~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~ 104 (456)
T 2c9o_A 32 AKQAASGLVGQENAREACGVIVEL-------IKSKKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYST 104 (456)
T ss_dssp BCSEETTEESCHHHHHHHHHHHHH-------HHTTCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCS
T ss_pred hhhchhhccCHHHHHHHHHHHHHH-------HHhCCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHH
Confidence 456799999999999999987743 222345678999999999999999999999999 99999999999888
Q ss_pred hhhhhhhh-------------hcceeeeeccccccccCc-----------------------------------------
Q 012000 289 WVGEGEKL-------------VRTLFMIDSIMSTRMANE----------------------------------------- 314 (473)
Q Consensus 289 ~~g~~~~~-------------~~~if~IDei~~~~~~~~----------------------------------------- 314 (473)
|+++.+.. -+.+++|||++.......
T Consensus 105 ~~~~~~~~~~~f~~a~~~~~~~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~ 184 (456)
T 2c9o_A 105 EIKKTEVLMENFRRAIGLRIKETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKER 184 (456)
T ss_dssp SSCHHHHHHHHHHHTEEEEEEEEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTT
T ss_pred hhhhhHHHHHHHHHHHhhhhcCCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhcc
Confidence 88776541 123455565532211000
Q ss_pred --------------------------------------------------------------------------------
Q 012000 315 -------------------------------------------------------------------------------- 314 (473)
Q Consensus 315 -------------------------------------------------------------------------------- 314 (473)
T Consensus 185 ~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~ 264 (456)
T 2c9o_A 185 VEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLM 264 (456)
T ss_dssp CCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC-----------------
T ss_pred CCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhc
Confidence
Q ss_pred ----------------------------------------chHHHHHHHHHHHHhcCcCCCCCCcEEEEee---------
Q 012000 315 ----------------------------------------NDASRRLKSEFLIQFDGVTSNPNDLVIVMGA--------- 345 (473)
Q Consensus 315 ----------------------------------------~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~t--------- 345 (473)
+.......+.|+..|+ .+..+++|+++
T Consensus 265 ~p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lE----e~~~~~~il~tn~~~~~i~~ 340 (456)
T 2c9o_A 265 KPKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALE----SSIAPIVIFASNRGNCVIRG 340 (456)
T ss_dssp ------------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTT----STTCCEEEEEECCSEEECBT
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhh----ccCCCEEEEecCCccccccc
Confidence 0000112333444443 23334555455
Q ss_pred cC---CCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHc-CCCCHHHHHHHHHHHHHHhH
Q 012000 346 TN---KPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRET-EGYSGSDLQALCEEAAMMPI 421 (473)
Q Consensus 346 Tn---~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t-~g~s~~dL~~l~~~A~~~a~ 421 (473)
|+ .+..|++.+++||.. +.|++|+.++...+++..+...++.++++.+..++..+ .| +++....+++.|...|.
T Consensus 341 ~~~~~~~~~l~~~i~sR~~~-~~~~~~~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g-~~r~a~~ll~~a~~~A~ 418 (456)
T 2c9o_A 341 TEDITSPHGIPLDLLDRVMI-IRTMLYTPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKT-TLRYSVQLLTPANLLAK 418 (456)
T ss_dssp TSSCEEETTCCHHHHTTEEE-EECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHS-CHHHHHHTHHHHHHHHH
T ss_pred cccccccccCChhHHhhcce-eeCCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCC-CHHHHHHHHHHHHHHHh
Confidence 32 277899999999988 69999999999999999888777888999999999998 77 78888889998877765
Q ss_pred HHhcccccccccccCCCCcHHHHHHHHHhhCCCCCH-HHHHHHHHHHHhh
Q 012000 422 RELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNK-SKWEELEQWNREF 470 (473)
Q Consensus 422 ~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~-~~~~~~~~w~~~~ 470 (473)
.+ +...|+.+|+..++.-+- +. ...+.+.+|..+|
T Consensus 419 ~~-----------~~~~v~~~~v~~~~~~~~---d~~~~~~~~~~~~~~~ 454 (456)
T 2c9o_A 419 IN-----------GKDSIEKEHVEEISELFY---DAKSSAKILADQQDKY 454 (456)
T ss_dssp HT-----------TCSSBCHHHHHHHHHHSC---CHHHHHHHHHC-----
T ss_pred hc-----------CCCccCHHHHHHHHHHhc---ChHHHHHHHHHHHHhc
Confidence 43 225699999999998753 22 2344455555554
No 38
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.79 E-value=3.4e-19 Score=189.89 Aligned_cols=225 Identities=18% Similarity=0.216 Sum_probs=149.9
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch----
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS---- 287 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~---- 287 (473)
..-++|++|++++++.+.+.+.+...... .+..++||+||||||||+||+++|..++.++..+++..+..
T Consensus 77 ~~l~~di~G~~~vk~~i~~~~~l~~~~~~------~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~ 150 (543)
T 3m6a_A 77 RLLDEEHHGLEKVKERILEYLAVQKLTKS------LKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEI 150 (543)
T ss_dssp GTHHHHCSSCHHHHHHHHHHHHHHHHSSS------CCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-------
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHhccc------CCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhh
Confidence 34567899999999999988765433222 14568999999999999999999999999999998876432
Q ss_pred -----hhhhhhhhh----------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-----------CCCcEE
Q 012000 288 -----KWVGEGEKL----------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-----------PNDLVI 341 (473)
Q Consensus 288 -----~~~g~~~~~----------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-----------~~~~v~ 341 (473)
.|+|..... ...+++|||++....... ....+.|+..|+..... ....++
T Consensus 151 ~g~~~~~ig~~~~~~~~~~~~a~~~~~vl~lDEid~l~~~~~----~~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~ 226 (543)
T 3m6a_A 151 RGHRRTYVGAMPGRIIQGMKKAGKLNPVFLLDEIDKMSSDFR----GDPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVL 226 (543)
T ss_dssp -------------CHHHHHHTTCSSSEEEEEEESSSCC-------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCE
T ss_pred hhHHHHHhccCchHHHHHHHHhhccCCEEEEhhhhhhhhhhc----cCHHHHHHHHHhhhhcceeecccCCeeecccceE
Confidence 334332221 234788999977654322 12345666666543211 014589
Q ss_pred EEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhc-----cC-----CCCCChhhHHHHHHHcCC-CCHHHHH
Q 012000 342 VMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK-----GQ-----AFSLPGGDLERLVRETEG-YSGSDLQ 410 (473)
Q Consensus 342 vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~-----~~-----~~~l~~~~l~~La~~t~g-~s~~dL~ 410 (473)
||+|||.++.+++++++||. .|+++.|+.+++..|++.++. .. .+.+++..+..|+....+ ...++|.
T Consensus 227 iI~ttN~~~~l~~aL~~R~~-vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~~~~i~i~~~~l~~l~~~~~~~~~vR~L~ 305 (543)
T 3m6a_A 227 FIATANNLATIPGPLRDRME-IINIAGYTEIEKLEIVKDHLLPKQIKEHGLKKSNLQLRDQAILDIIRYYTREAGVRSLE 305 (543)
T ss_dssp EEEECSSTTTSCHHHHHHEE-EEECCCCCHHHHHHHHHHTHHHHHHHHTTCCGGGCEECHHHHHHHHHHHCCCSSSHHHH
T ss_pred EEeccCccccCCHHHHhhcc-eeeeCCCCHHHHHHHHHHHHHHHHHHHcCCCcccccCCHHHHHHHHHhCChhhchhHHH
Confidence 99999999999999999995 689999999999999998762 22 345678888888875543 4556666
Q ss_pred HHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 411 ALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 411 ~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+.+..++..+..+.... ......|+.+|+.+++...+
T Consensus 306 ~~i~~~~~~aa~~~~~~-----~~~~~~It~~~l~~~Lg~~~ 342 (543)
T 3m6a_A 306 RQLAAICRKAAKAIVAE-----ERKRITVTEKNLQDFIGKRI 342 (543)
T ss_dssp HHHHHHHHHHHHHHHTT-----CCSCCEECTTTTHHHHCSCC
T ss_pred HHHHHHHHHHHHHHHhc-----CCcceecCHHHHHHHhCCcc
Confidence 66655555444332211 12234688899999886543
No 39
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.78 E-value=2.8e-18 Score=161.45 Aligned_cols=202 Identities=23% Similarity=0.242 Sum_probs=149.5
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC-----------
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA----------- 275 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~----------- 275 (473)
.+++++..|++++|.+..++.|.+++.. ...+..++|+||||||||++++++++++..
T Consensus 14 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~ 82 (250)
T 1njg_A 14 ARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGV 82 (250)
T ss_dssp HHHTCCCSGGGCCSCHHHHHHHHHHHHH-----------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSC
T ss_pred hhccCCccHHHHhCcHHHHHHHHHHHHc-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcc
Confidence 4567788999999999999999988752 223457999999999999999999998743
Q ss_pred -------------cEEEEecCccch-hhhhhhh--------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC
Q 012000 276 -------------TFFNVSASSLTS-KWVGEGE--------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT 333 (473)
Q Consensus 276 -------------~~~~v~~~~l~~-~~~g~~~--------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~ 333 (473)
.++.++...... ....... ..-+.++.|||++.. .......++..++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l--------~~~~~~~l~~~l~~~- 153 (250)
T 1njg_A 83 CDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML--------SRHSFNALLKTLEEP- 153 (250)
T ss_dssp SHHHHHHHTTCCSSEEEEETTCGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS--------CHHHHHHHHHHHHSC-
T ss_pred cHHHHHHhccCCcceEEecCcccccHHHHHHHHHHhhhchhcCCceEEEEECcccc--------cHHHHHHHHHHHhcC-
Confidence 233333322100 0000000 111357789999543 233455666666532
Q ss_pred CCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHH
Q 012000 334 SNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALC 413 (473)
Q Consensus 334 ~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~ 413 (473)
...+.+|++||.+..+++++++|+ ..+.++.|+.++...++..++...+..+++..+..|++.+.| .++.+.+++
T Consensus 154 ---~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~~~~~~~~ 228 (250)
T 1njg_A 154 ---PEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSLT 228 (250)
T ss_dssp ---CTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHTT-CHHHHHHHH
T ss_pred ---CCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHcCC-CHHHHHHHH
Confidence 345888899999999999999997 568999999999999999999888888889999999999988 789999999
Q ss_pred HHHHHHhHHHhcccccccccccCCCCcHHHHHHHH
Q 012000 414 EEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAM 448 (473)
Q Consensus 414 ~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al 448 (473)
+.|+..+ ...|+.+|+.+++
T Consensus 229 ~~~~~~~---------------~~~i~~~~v~~~~ 248 (250)
T 1njg_A 229 DQAIASG---------------DGQVSTQAVSAML 248 (250)
T ss_dssp HHHHTTT---------------TSSBCHHHHHHHS
T ss_pred HHHHhcc---------------CceecHHHHHHHh
Confidence 8885332 1369999998876
No 40
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.78 E-value=7.5e-20 Score=188.42 Aligned_cols=159 Identities=22% Similarity=0.295 Sum_probs=77.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCC--CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch-hhhhh
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLR--RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS-KWVGE 292 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~--~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~-~~~g~ 292 (473)
++|+|++++|+.|..++..|..++.++.... .+++++||+||||||||++|+++|..++.+|+.++++.+.. .|+|.
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 4789999999999999988887777666553 35689999999999999999999999999999999998887 58885
Q ss_pred -hhhhhcceee-------eeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEee-cCCCCCCCHHHhc--ccc
Q 012000 293 -GEKLVRTLFM-------IDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGA-TNKPQELDDAVLR--RLV 361 (473)
Q Consensus 293 -~~~~~~~if~-------IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~t-Tn~~~~Ld~al~r--Rf~ 361 (473)
.+..++.+|. +|+++..+........+++++.|+.+|||+..... + +++ ||+++.||++|+| ||+
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~--v--~a~~TN~~~~ld~aL~rggr~D 170 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVE--N--HDSHSSTRQAFRKKLREGQLDD 170 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccc--c--ccccccCHHHHHHHHHcCCCcc
Confidence 5666655543 78888777766777788999999999999864322 3 455 9999999999998 999
Q ss_pred cccccCCCcHH-HHHHHH
Q 012000 362 KRIYVPLPDEN-VRRLLL 378 (473)
Q Consensus 362 ~~i~~~~P~~~-~r~~il 378 (473)
+.|++++|+.. .|.+|+
T Consensus 171 ~~i~i~lP~~~~~~~ei~ 188 (444)
T 1g41_A 171 KEIEIDVSAGVSMGVEIM 188 (444)
T ss_dssp ------------------
T ss_pred eEEEEcCCCCccchhhhh
Confidence 99999999987 666664
No 41
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.77 E-value=6.6e-17 Score=162.04 Aligned_cols=238 Identities=17% Similarity=0.151 Sum_probs=166.3
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
.+...++.+|++++|.+.+++.|...+..... ...++.+++|+||||||||||++++|++++.++...++..+
T Consensus 15 ~~~~lr~~~l~~~~g~~~~~~~l~~~i~~~~~-------~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~ 87 (334)
T 1in4_A 15 GVQFLRPKSLDEFIGQENVKKKLSLALEAAKM-------RGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVL 87 (334)
T ss_dssp --CTTSCSSGGGCCSCHHHHHHHHHHHHHHHH-------HTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTC
T ss_pred HHHHcCCccHHHccCcHHHHHHHHHHHHHHHh-------cCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHh
Confidence 34556778999999999999988877642111 12345689999999999999999999999998887776544
Q ss_pred chh--hhhhhhh-hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC------C--------CCCcEEEEeecCC
Q 012000 286 TSK--WVGEGEK-LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS------N--------PNDLVIVMGATNK 348 (473)
Q Consensus 286 ~~~--~~g~~~~-~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~------~--------~~~~v~vI~tTn~ 348 (473)
... ....... ....+++||+++.... .....++..+..... . .-..+.++++|+.
T Consensus 88 ~~~~~l~~~~~~~~~~~v~~iDE~~~l~~--------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~~ 159 (334)
T 1in4_A 88 VKQGDMAAILTSLERGDVLFIDEIHRLNK--------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATTR 159 (334)
T ss_dssp CSHHHHHHHHHHCCTTCEEEEETGGGCCH--------HHHHHHHHHHHTSCCCC---------------CCCEEEEEESC
T ss_pred cCHHHHHHHHHHccCCCEEEEcchhhcCH--------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecCC
Confidence 211 1110111 1346888999865432 122223333321110 0 0123677889999
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccc
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNI 428 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~ 428 (473)
+..|++++++||...+.+++|+.+++..+++......++.++++.+..||.++.| +++++.++++.+...|..+
T Consensus 160 ~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~~~~~~~~~~ia~~~~G-~~R~a~~ll~~~~~~a~~~----- 233 (334)
T 1in4_A 160 SGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDVEIEDAAAEMIAKRSRG-TPRIAIRLTKRVRDMLTVV----- 233 (334)
T ss_dssp GGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHTSTT-CHHHHHHHHHHHHHHHHHH-----
T ss_pred cccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCCCcCHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHHHc-----
Confidence 9999999999998888999999999999999988877888889999999999998 6788889998887666433
Q ss_pred cccccccCCCCcHHHHHHHHHhhCC---CCCHHHHHHHHHHHHhh
Q 012000 429 LTVKANQLRPLRYEDFQKAMAVIRP---SLNKSKWEELEQWNREF 470 (473)
Q Consensus 429 ~~~~~~~~~~it~~df~~al~~~~p---s~~~~~~~~~~~w~~~~ 470 (473)
....||.+++.+++..... ..+..+..-+..+.+.|
T Consensus 234 ------~~~~It~~~v~~al~~~~~~~~~l~~~~~~~l~~~~~~~ 272 (334)
T 1in4_A 234 ------KADRINTDIVLKTMEVLNIDDEGLDEFDRKILKTIIEIY 272 (334)
T ss_dssp ------TCSSBCHHHHHHHHHHHTCCTTCCCHHHHHHHHHHHHHS
T ss_pred ------CCCCcCHHHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHh
Confidence 1245888889888887653 22333434455555555
No 42
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.77 E-value=1.2e-18 Score=173.51 Aligned_cols=188 Identities=13% Similarity=0.123 Sum_probs=139.4
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
.+++++|.+|++++|++++++.|++++. ....++.+|++||||||||++|+++|++++.+++.+++++.
T Consensus 16 ~~~k~rP~~~~~ivg~~~~~~~l~~~l~-----------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~ 84 (324)
T 3u61_B 16 LEQKYRPSTIDECILPAFDKETFKSITS-----------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDC 84 (324)
T ss_dssp HHHHSCCCSTTTSCCCHHHHHHHHHHHH-----------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTC
T ss_pred HHHhhCCCCHHHHhCcHHHHHHHHHHHH-----------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEccccc
Confidence 4566889999999999999999999885 23345678899999999999999999999999999998765
Q ss_pred chhhhhh----hhhh-----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHH
Q 012000 286 TSKWVGE----GEKL-----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 356 (473)
Q Consensus 286 ~~~~~g~----~~~~-----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al 356 (473)
....+.. .... -..+++|||++.... ....+.|+..++.. ..++.+|++||.+..+++++
T Consensus 85 ~~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~-------~~~~~~L~~~le~~----~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 85 KIDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL-------AESQRHLRSFMEAY----SSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp CHHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG-------HHHHHHHHHHHHHH----GGGCEEEEEESSGGGSCTTH
T ss_pred CHHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc-------HHHHHHHHHHHHhC----CCCcEEEEEeCCccccCHHH
Confidence 3222111 1111 346888999955431 33455566666533 23478889999999999999
Q ss_pred hcccccccccCCCcHHHHHHHHHH-------HhccCCCCCCh-hhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 357 LRRLVKRIYVPLPDENVRRLLLKH-------KLKGQAFSLPG-GDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 357 ~rRf~~~i~~~~P~~~~r~~il~~-------~l~~~~~~l~~-~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
++||. .+.|+.|+.+++..+++. .+...++.+++ +.+..|+..+.|.. +++.+.++.++
T Consensus 154 ~sR~~-~i~~~~~~~~e~~~il~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~gd~-R~a~~~L~~~~ 220 (324)
T 3u61_B 154 QSRCR-VITFGQPTDEDKIEMMKQMIRRLTEICKHEGIAIADMKVVAALVKKNFPDF-RKTIGELDSYS 220 (324)
T ss_dssp HHHSE-EEECCCCCHHHHHHHHHHHHHHHHHHHHHHTCCBSCHHHHHHHHHHTCSCT-THHHHHHHHHG
T ss_pred HhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHhCCCCH-HHHHHHHHHHh
Confidence 99996 599999998887655443 34556778888 99999999988844 44445555554
No 43
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=1e-17 Score=177.70 Aligned_cols=199 Identities=18% Similarity=0.186 Sum_probs=138.7
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhch-hcchhhhhcCC----CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILP-AKRRDLFTGLR----RPARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p-~~~~~~~~~~~----~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
-+++++|.+|++|+|.+.+++.|.+++... ...+..+...+ .+++++||+||||||||++|+++|++++.+++.+
T Consensus 29 W~ekyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~i 108 (516)
T 1sxj_A 29 WTVKYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQ 108 (516)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEE
T ss_pred cccccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEE
Confidence 355788999999999999999999998742 22222232221 2457999999999999999999999999999999
Q ss_pred ecCccchhhhhhh-----------------------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCC
Q 012000 281 SASSLTSKWVGEG-----------------------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 337 (473)
Q Consensus 281 ~~~~l~~~~~g~~-----------------------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~ 337 (473)
+++++........ ...-+.+++|||++........ ....|+..++. ..
T Consensus 109 n~s~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~~-----~l~~L~~~l~~----~~ 179 (516)
T 1sxj_A 109 NASDVRSKTLLNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDRG-----GVGQLAQFCRK----TS 179 (516)
T ss_dssp CTTSCCCHHHHHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTSTT-----HHHHHHHHHHH----CS
T ss_pred eCCCcchHHHHHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhHH-----HHHHHHHHHHh----cC
Confidence 9987655432111 0123468889999876543221 23344444442 23
Q ss_pred CcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 012000 338 DLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 416 (473)
Q Consensus 338 ~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A 416 (473)
.++++|+++.....+. .+++|+ ..+.|+.|+.+++..++...+...++.++++.+..|++.+.| ..+.+.++++.+
T Consensus 180 ~~iIli~~~~~~~~l~-~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~~i~~~~l~~la~~s~G-diR~~i~~L~~~ 255 (516)
T 1sxj_A 180 TPLILICNERNLPKMR-PFDRVC-LDIQFRRPDANSIKSRLMTIAIREKFKLDPNVIDRLIQTTRG-DIRQVINLLSTI 255 (516)
T ss_dssp SCEEEEESCTTSSTTG-GGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHTTT-CHHHHHHHHTHH
T ss_pred CCEEEEEcCCCCccch-hhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-cHHHHHHHHHHH
Confidence 3366665554444454 355554 579999999999999999988888888889999999999987 344444444433
No 44
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.77 E-value=1e-17 Score=158.44 Aligned_cols=205 Identities=13% Similarity=0.101 Sum_probs=146.2
Q ss_pred CCCcccccC---hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCcc
Q 012000 212 SVKWEDVAG---LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (473)
Q Consensus 212 ~~~~~divG---l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l 285 (473)
+.+|++++| ...+.+.|..++.. ....++||+||||||||++|++++.++. .+++.+++.++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~l~~~~~~------------~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~ 91 (242)
T 3bos_A 24 DETFTSYYPAAGNDELIGALKSAASG------------DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIH 91 (242)
T ss_dssp TCSTTTSCC--CCHHHHHHHHHHHHT------------CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGG
T ss_pred CCChhhccCCCCCHHHHHHHHHHHhC------------CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHH
Confidence 479999997 34667777666532 1357899999999999999999999874 77888888776
Q ss_pred chhhhhhhhh-hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcE-EEEeecCCCC---CCCHHHhccc
Q 012000 286 TSKWVGEGEK-LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV-IVMGATNKPQ---ELDDAVLRRL 360 (473)
Q Consensus 286 ~~~~~g~~~~-~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v-~vI~tTn~~~---~Ld~al~rRf 360 (473)
.......... .-..++.|||++...... .....++..++..... ..+ +|++++..+. .+++++.+||
T Consensus 92 ~~~~~~~~~~~~~~~vliiDe~~~~~~~~------~~~~~l~~~l~~~~~~--~~~~ii~~~~~~~~~~~~~~~~l~~r~ 163 (242)
T 3bos_A 92 ASISTALLEGLEQFDLICIDDVDAVAGHP------LWEEAIFDLYNRVAEQ--KRGSLIVSASASPMEAGFVLPDLVSRM 163 (242)
T ss_dssp GGSCGGGGTTGGGSSEEEEETGGGGTTCH------HHHHHHHHHHHHHHHH--CSCEEEEEESSCTTTTTCCCHHHHHHH
T ss_pred HHHHHHHHHhccCCCEEEEeccccccCCH------HHHHHHHHHHHHHHHc--CCCeEEEEcCCCHHHHHHhhhhhhhHh
Confidence 5543222211 224688899996543221 1122333333322111 123 4444444444 4569999999
Q ss_pred c--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCC
Q 012000 361 V--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRP 438 (473)
Q Consensus 361 ~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~ 438 (473)
. ..+.++.|+.+++..++..++...++.++++.+..|+..+.| +.+++.++++.+...+..+ .+.
T Consensus 164 ~~~~~i~l~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~l~~~l~~~~~~a~~~------------~~~ 230 (242)
T 3bos_A 164 HWGLTYQLQPMMDDEKLAALQRRAAMRGLQLPEDVGRFLLNRMAR-DLRTLFDVLDRLDKASMVH------------QRK 230 (242)
T ss_dssp HHSEEEECCCCCGGGHHHHHHHHHHHTTCCCCHHHHHHHHHHTTT-CHHHHHHHHHHHHHHHHHH------------TCC
T ss_pred hcCceEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHccC-CHHHHHHHHHHHHHHHHHh------------CCC
Confidence 6 779999999999999999999888888899999999999987 7899999999888776433 146
Q ss_pred CcHHHHHHHHH
Q 012000 439 LRYEDFQKAMA 449 (473)
Q Consensus 439 it~~df~~al~ 449 (473)
|+.+|+.+++.
T Consensus 231 It~~~v~~~l~ 241 (242)
T 3bos_A 231 LTIPFVKEMLR 241 (242)
T ss_dssp CCHHHHHHHHT
T ss_pred CcHHHHHHHhh
Confidence 99999998874
No 45
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.76 E-value=2.1e-17 Score=165.14 Aligned_cols=212 Identities=17% Similarity=0.190 Sum_probs=149.7
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc-c
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS-L 285 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~-l 285 (473)
+++..+..+++++|++++++.+...+.. ..++||+||||||||+||+++|+.++.+++.+++.. .
T Consensus 18 ~~~~~~~~~~~i~g~~~~~~~l~~~l~~--------------~~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~ 83 (331)
T 2r44_A 18 IKEVIDEVGKVVVGQKYMINRLLIGICT--------------GGHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDL 83 (331)
T ss_dssp HHHHHHHHTTTCCSCHHHHHHHHHHHHH--------------TCCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTC
T ss_pred HHHHHHHhccceeCcHHHHHHHHHHHHc--------------CCeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCC
Confidence 3334455678999999999998877642 258999999999999999999999999999888731 1
Q ss_pred -chhhhhh---------hh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-------CCCCCCcEEEEe
Q 012000 286 -TSKWVGE---------GE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMG 344 (473)
Q Consensus 286 -~~~~~g~---------~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-------~~~~~~~v~vI~ 344 (473)
.....+. .. .....+++|||++.. .....+.|+..|+.. ....+.+++||+
T Consensus 84 ~~~~l~g~~~~~~~~~~~~~~~g~l~~~vl~iDEi~~~--------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~via 155 (331)
T 2r44_A 84 LPSDLIGTMIYNQHKGNFEVKKGPVFSNFILADEVNRS--------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLA 155 (331)
T ss_dssp CHHHHHEEEEEETTTTEEEEEECTTCSSEEEEETGGGS--------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEE
T ss_pred ChhhcCCceeecCCCCceEeccCcccccEEEEEccccC--------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEE
Confidence 1111111 00 011258889999543 334455555555421 111234578888
Q ss_pred ecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhccC----------------------CCCCChhhHHHH
Q 012000 345 ATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQ----------------------AFSLPGGDLERL 397 (473)
Q Consensus 345 tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~----------------------~~~l~~~~l~~L 397 (473)
|+|... .+++++++||...+.++.|+.+++.+|++..+... ++.++++.++.+
T Consensus 156 t~np~~~~~~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i 235 (331)
T 2r44_A 156 TQNPVEQEGTYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFNYQVQKIVSKNDVLEIRNEINKVTISESLEKYI 235 (331)
T ss_dssp EECTTCCSCCCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCCCCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHH
T ss_pred ecCCCcccCcccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcchhccccCCHHHHHHHHHHhccCCCCHHHHHHH
Confidence 888543 38999999998889999999999999999887653 455677777777
Q ss_pred HHHc-----C--------------CCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 398 VRET-----E--------------GYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 398 a~~t-----~--------------g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
+... . |.|.+.+..+++.|...|.-+ ....|+.+|+.+++..+
T Consensus 236 ~~~~~~~r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~-----------g~~~v~~~dv~~~~~~v 297 (331)
T 2r44_A 236 IELVFATRFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFN-----------NRDYVLPEDIKEVAYDI 297 (331)
T ss_dssp HHHHHHHHSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHT-----------TCSBCCHHHHHHHHHHH
T ss_pred HHHHHHHhccccccccccccccccCcChhHHHHHHHHHHHHHHHc-----------CCCCCCHHHHHHHHHHH
Confidence 6543 1 558898888888876665432 22458999999988764
No 46
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.76 E-value=1.2e-17 Score=173.54 Aligned_cols=211 Identities=17% Similarity=0.242 Sum_probs=153.5
Q ss_pred CCCCccccc-C--hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEec
Q 012000 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~div-G--l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~ 282 (473)
|..+|++++ | ...+...+...+..| .. +.+++||||||||||+||+++++++ +.+++.+++
T Consensus 100 ~~~tfd~fv~g~~n~~a~~~~~~~a~~~----------~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 100 PDYTFENFVVGPGNSFAYHAALEVAKHP----------GR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp TTCSGGGCCCCTTTHHHHHHHHHHHHST----------TS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCCChhhcCCCCchHHHHHHHHHHHhCC----------CC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 456899988 5 444555555444322 11 4689999999999999999999988 888999998
Q ss_pred Cccchhhhhhhhh--------h---hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC
Q 012000 283 SSLTSKWVGEGEK--------L---VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE 351 (473)
Q Consensus 283 ~~l~~~~~g~~~~--------~---~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~ 351 (473)
.++...+...... . -..+++|||++..... ......|+..++.... .+..+||++.+.+..
T Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~------~~~q~~l~~~l~~l~~--~~~~iIitt~~~~~~ 240 (440)
T 2z4s_A 169 EKFLNDLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGK------TGVQTELFHTFNELHD--SGKQIVICSDREPQK 240 (440)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSC------HHHHHHHHHHHHHHHT--TTCEEEEEESSCGGG
T ss_pred HHHHHHHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCC------hHHHHHHHHHHHHHHH--CCCeEEEEECCCHHH
Confidence 8776554432211 1 3468889999665431 0123334444433321 223566666665665
Q ss_pred ---CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcc
Q 012000 352 ---LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGT 426 (473)
Q Consensus 352 ---Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~ 426 (473)
+++++++||. ..+.+++|+.++|..+++..+...++.++++.+..|+..+.| +.+++..+++.+...+...
T Consensus 241 l~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~~i~~e~l~~la~~~~g-n~R~l~~~L~~~~~~a~~~--- 316 (440)
T 2z4s_A 241 LSEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHGELPEEVLNFVAENVDD-NLRRLRGAIIKLLVYKETT--- 316 (440)
T ss_dssp CSSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTCCCCTTHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHS---
T ss_pred HHHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHHh---
Confidence 8899999996 779999999999999999999888888899999999999987 8999999999987766321
Q ss_pred cccccccccCCCCcHHHHHHHHHhhCC
Q 012000 427 NILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 427 ~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
..+|+.+++.++++...+
T Consensus 317 ---------~~~It~~~~~~~l~~~~~ 334 (440)
T 2z4s_A 317 ---------GKEVDLKEAILLLKDFIK 334 (440)
T ss_dssp ---------SSCCCHHHHHHHTSTTTC
T ss_pred ---------CCCCCHHHHHHHHHHHhh
Confidence 135999999999988764
No 47
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=5.3e-18 Score=170.23 Aligned_cols=210 Identities=15% Similarity=0.149 Sum_probs=150.5
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC------CcEE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ------ATFF 278 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~------~~~~ 278 (473)
..+++++|.+|++++|++++++.|..++.. .. ..++||+||||||||++|+++|+.++ ..++
T Consensus 26 ~~~~k~~p~~~~~i~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~ 93 (353)
T 1sxj_D 26 PWVEKYRPKNLDEVTAQDHAVTVLKKTLKS-----------AN-LPHMLFYGPPGTGKTSTILALTKELYGPDLMKSRIL 93 (353)
T ss_dssp CHHHHTCCSSTTTCCSCCTTHHHHHHHTTC-----------TT-CCCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEE
T ss_pred cHHHhcCCCCHHHhhCCHHHHHHHHHHHhc-----------CC-CCEEEEECCCCCCHHHHHHHHHHHhCCCcccccceE
Confidence 344567899999999999999999888741 11 23599999999999999999999864 4688
Q ss_pred EEecCccch-hhhh----hhhh----------------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCC
Q 012000 279 NVSASSLTS-KWVG----EGEK----------------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 337 (473)
Q Consensus 279 ~v~~~~l~~-~~~g----~~~~----------------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~ 337 (473)
.+++++... ..+. .... ....+++|||++... ....+.|+..|+.. .
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~--------~~~~~~Ll~~le~~----~ 161 (353)
T 1sxj_D 94 ELNASDERGISIVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT--------ADAQSALRRTMETY----S 161 (353)
T ss_dssp EECSSSCCCHHHHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC--------HHHHHHHHHHHHHT----T
T ss_pred EEccccccchHHHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC--------HHHHHHHHHHHHhc----C
Confidence 888776321 1111 1000 122488899985443 23345666666643 2
Q ss_pred CcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 338 DLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 338 ~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
....+|.+||.+..+++++++||. .+.+++|+.++...++...+...++.++++.+..|+..+.| ..+.+.++++.++
T Consensus 162 ~~~~~il~~~~~~~l~~~l~sR~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 239 (353)
T 1sxj_D 162 GVTRFCLICNYVTRIIDPLASQCS-KFRFKALDASNAIDRLRFISEQENVKCDDGVLERILDISAG-DLRRGITLLQSAS 239 (353)
T ss_dssp TTEEEEEEESCGGGSCHHHHHHSE-EEECCCCCHHHHHHHHHHHHHTTTCCCCHHHHHHHHHHTSS-CHHHHHHHHHHTH
T ss_pred CCceEEEEeCchhhCcchhhccCc-eEEeCCCCHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 336677788999999999999997 68999999999999999999888888899999999999998 4666666666665
Q ss_pred HHhHHHhcccccccccccCCCCcHHHHHHHHHh
Q 012000 418 MMPIRELGTNILTVKANQLRPLRYEDFQKAMAV 450 (473)
Q Consensus 418 ~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~ 450 (473)
..+-+. .....|+.+|+.+++..
T Consensus 240 ~~~~~~----------~~~~~It~~~v~~~~~~ 262 (353)
T 1sxj_D 240 KGAQYL----------GDGKNITSTQVEELAGV 262 (353)
T ss_dssp HHHHHH----------CSCCCCCHHHHHHHHTC
T ss_pred HhcCCC----------ccCccccHHHHHHHhCC
Confidence 443221 00114777777776653
No 48
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.75 E-value=2.2e-17 Score=164.57 Aligned_cols=210 Identities=19% Similarity=0.242 Sum_probs=148.5
Q ss_pred CCCCccccc-C--hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 211 PSVKWEDVA-G--LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 211 ~~~~~~div-G--l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
|..+|++++ | ...+...++.++..| ...+.+++||||||||||+||+++++++ +.+++.+++.+
T Consensus 6 ~~~~f~~fv~g~~~~~a~~~~~~~~~~~----------~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~ 75 (324)
T 1l8q_A 6 PKYTLENFIVGEGNRLAYEVVKEALENL----------GSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADD 75 (324)
T ss_dssp TTCCSSSCCCCTTTHHHHHHHHHHHHTT----------TTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred CCCCcccCCCCCcHHHHHHHHHHHHhCc----------CCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHH
Confidence 567899997 4 555666666665432 1235689999999999999999999998 89999999888
Q ss_pred cchhhhhhhhhh----------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC---C
Q 012000 285 LTSKWVGEGEKL----------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---E 351 (473)
Q Consensus 285 l~~~~~g~~~~~----------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~---~ 351 (473)
+...+.+..... -..+++|||++..... ......++..++.... .+..+|+++++.+. .
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~vL~iDEi~~l~~~------~~~~~~l~~~l~~~~~--~~~~iii~~~~~~~~l~~ 147 (324)
T 1l8q_A 76 FAQAMVEHLKKGTINEFRNMYKSVDLLLLDDVQFLSGK------ERTQIEFFHIFNTLYL--LEKQIILASDRHPQKLDG 147 (324)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHTCSEEEEECGGGGTTC------HHHHHHHHHHHHHHHH--TTCEEEEEESSCGGGCTT
T ss_pred HHHHHHHHHHcCcHHHHHHHhcCCCEEEEcCcccccCC------hHHHHHHHHHHHHHHH--CCCeEEEEecCChHHHHH
Confidence 765554432211 1468889999664421 0122333333332221 22357777777776 6
Q ss_pred CCHHHhcccc--cccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHH---hHHHhcc
Q 012000 352 LDDAVLRRLV--KRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMM---PIRELGT 426 (473)
Q Consensus 352 Ld~al~rRf~--~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~---a~~~~~~ 426 (473)
+++++++||. ..+.+++ +.+++..+++.++...++.++++.+..|+..+ | ..+++.+++..++.. ++. .
T Consensus 148 l~~~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~~l~~~~l~~l~~~~-g-~~r~l~~~l~~~~~~~~~~l~-~-- 221 (324)
T 1l8q_A 148 VSDRLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNLELRKEVIDYLLENT-K-NVREIEGKIKLIKLKGFEGLE-R-- 221 (324)
T ss_dssp SCHHHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHC-S-SHHHHHHHHHHHHHHCHHHHH-H--
T ss_pred hhhHhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHhC-C-CHHHHHHHHHHHHHcCHHHhc-c--
Confidence 8999999996 5688999 99999999999999888899999999999999 6 788888888887655 111 0
Q ss_pred cccccccccCCCC-cHHHHHHHHHhh
Q 012000 427 NILTVKANQLRPL-RYEDFQKAMAVI 451 (473)
Q Consensus 427 ~~~~~~~~~~~~i-t~~df~~al~~~ 451 (473)
...+.| +.+++.+++...
T Consensus 222 -------~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 222 -------KERKERDKLMQIVEFVANY 240 (324)
T ss_dssp -------HHHHHHHHHHHHHHHHHHH
T ss_pred -------ccccCCCCHHHHHHHHHHH
Confidence 111346 777777777653
No 49
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.75 E-value=4.3e-18 Score=172.51 Aligned_cols=228 Identities=21% Similarity=0.256 Sum_probs=155.5
Q ss_pred cccChHHHHHHHHHHHhchhcchhhh---hcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh-hhhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLF---TGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-WVGE 292 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~---~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-~~g~ 292 (473)
.|+|++.+++.|...+.......... .....++.++||+||||||||++|+++|+.++.+|+.++++++... |+|.
T Consensus 16 ~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g~ 95 (363)
T 3hws_A 16 YVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVGE 95 (363)
T ss_dssp HCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHHH
T ss_pred hccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhcccccccc
Confidence 37999999999999886443332211 1122467899999999999999999999999999999999887643 5555
Q ss_pred h-h---------------hhhcceeeeeccccccccC------cchHHHHHHHHHHHHhcCcCCC---------------
Q 012000 293 G-E---------------KLVRTLFMIDSIMSTRMAN------ENDASRRLKSEFLIQFDGVTSN--------------- 335 (473)
Q Consensus 293 ~-~---------------~~~~~if~IDei~~~~~~~------~~~~~~~~~~~ll~~ldg~~~~--------------- 335 (473)
. . ..-..+++|||++...... .+.....+.+.|+..|++....
T Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~~ 175 (363)
T 3hws_A 96 DVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEFL 175 (363)
T ss_dssp HHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------CC
T ss_pred cHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCceE
Confidence 3 1 1234688899998654431 1222334788999999853210
Q ss_pred --CCCcEEEEeecCCC----------CC-----------------------------------CCHHHhcccccccccCC
Q 012000 336 --PNDLVIVMGATNKP----------QE-----------------------------------LDDAVLRRLVKRIYVPL 368 (473)
Q Consensus 336 --~~~~v~vI~tTn~~----------~~-----------------------------------Ld~al~rRf~~~i~~~~ 368 (473)
...++++|+++|.. .. +.++|++||+.++.+++
T Consensus 176 ~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~p 255 (363)
T 3hws_A 176 QVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLNE 255 (363)
T ss_dssp CCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECCC
T ss_pred EEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecCC
Confidence 11234455554432 11 78999999999999999
Q ss_pred CcHHHHHHHHHH----Hh-------c--cCCCCCChhhHHHHHHH--cCCCCHHHHHHHHHHHHHHhHHHhccccccccc
Q 012000 369 PDENVRRLLLKH----KL-------K--GQAFSLPGGDLERLVRE--TEGYSGSDLQALCEEAAMMPIRELGTNILTVKA 433 (473)
Q Consensus 369 P~~~~r~~il~~----~l-------~--~~~~~l~~~~l~~La~~--t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~ 433 (473)
|+.+.+..|+.. ++ . ...+.++++.++.|+.. ...+.+++|.+++++++..++.++.... .
T Consensus 256 l~~~~~~~I~~~~~~~l~~~~~~~~~~~~~~l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~~~~l~~~~~~~----~ 331 (363)
T 3hws_A 256 LSEEALIQILKEPKNALTKQYQALFNLEGVDLEFRDEALDAIAKKAMARKTGARGLRSIVEAALLDTMYDLPSME----D 331 (363)
T ss_dssp CCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHHHHHHHSTTTCC----C
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcCceEEECHHHHHHHHHhhcCCccCchHHHHHHHHHHHHHHHhccccc----C
Confidence 999999998875 21 2 22345688899999964 4556679999999999988887753310 0
Q ss_pred ccCCCCcHHHHHHHH
Q 012000 434 NQLRPLRYEDFQKAM 448 (473)
Q Consensus 434 ~~~~~it~~df~~al 448 (473)
.....|+.+++.+.+
T Consensus 332 ~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 332 VEKVVIDESVIDGQS 346 (363)
T ss_dssp SEEEECHHHHTTCCS
T ss_pred CceeEEcHHHHhCcC
Confidence 011246666665543
No 50
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.75 E-value=2e-17 Score=165.90 Aligned_cols=211 Identities=18% Similarity=0.242 Sum_probs=141.1
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC--------------
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA-------------- 275 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~-------------- 275 (473)
.++.+|++++|.+.+++.+...+..+ ...++||+||||||||++|+++++.++.
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~~~~------------~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~ 85 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTAVDP------------GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNV 85 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHHHCG------------GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSG
T ss_pred CCCCCchhccChHHHHHHHHHHhhCC------------CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccc
Confidence 36789999999999888765444321 1246999999999999999999998863
Q ss_pred -------------------cEEEEecCccchhhhhh---------h---------hhhhcceeeeeccccccccCcchHH
Q 012000 276 -------------------TFFNVSASSLTSKWVGE---------G---------EKLVRTLFMIDSIMSTRMANENDAS 318 (473)
Q Consensus 276 -------------------~~~~v~~~~l~~~~~g~---------~---------~~~~~~if~IDei~~~~~~~~~~~~ 318 (473)
+++.+..........|. . ...-..+++|||++...
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l~-------- 157 (350)
T 1g8p_A 86 EMIPDWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLLE-------- 157 (350)
T ss_dssp GGSCTTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGSC--------
T ss_pred ccccchhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhCC--------
Confidence 22222211111111211 0 11114688899995433
Q ss_pred HHHHHHHHHHhcC----cCCCC-----CCcEEEEeecCCCC-CCCHHHhcccccccccCCC-cHHHHHHHHHHHh-----
Q 012000 319 RRLKSEFLIQFDG----VTSNP-----NDLVIVMGATNKPQ-ELDDAVLRRLVKRIYVPLP-DENVRRLLLKHKL----- 382 (473)
Q Consensus 319 ~~~~~~ll~~ldg----~~~~~-----~~~v~vI~tTn~~~-~Ld~al~rRf~~~i~~~~P-~~~~r~~il~~~l----- 382 (473)
......|+..++. +.... +.++++|+|||... .+++++++||..++.++.| +.+.+..|++..+
T Consensus 158 ~~~~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~ 237 (350)
T 1g8p_A 158 DHIVDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDAD 237 (350)
T ss_dssp HHHHHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccC
Confidence 3345556655542 11111 12589999999744 8999999999988999999 6777778876521
Q ss_pred ------------------------ccCCCCCChhhHHHHHHHcCC---CCHHHHHHHHHHHHHHhHHHhccccccccccc
Q 012000 383 ------------------------KGQAFSLPGGDLERLVRETEG---YSGSDLQALCEEAAMMPIRELGTNILTVKANQ 435 (473)
Q Consensus 383 ------------------------~~~~~~l~~~~l~~La~~t~g---~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~ 435 (473)
...++.++++.+..|+..+.+ .+.+.+.++++.|...|..+ +
T Consensus 238 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~-----------~ 306 (350)
T 1g8p_A 238 PKAFLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALE-----------G 306 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHT-----------T
T ss_pred chhhccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHc-----------C
Confidence 122346788888888887664 25689999999887776443 1
Q ss_pred CCCCcHHHHHHHHHhh
Q 012000 436 LRPLRYEDFQKAMAVI 451 (473)
Q Consensus 436 ~~~it~~df~~al~~~ 451 (473)
...|+.+|+..|+..+
T Consensus 307 ~~~v~~~~v~~a~~~~ 322 (350)
T 1g8p_A 307 ATAVGRDHLKRVATMA 322 (350)
T ss_dssp CSBCCHHHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHH
Confidence 2358999999988764
No 51
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.75 E-value=1.2e-17 Score=165.00 Aligned_cols=187 Identities=17% Similarity=0.159 Sum_probs=140.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFN 279 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~ 279 (473)
..+++++|.+|++++|++.+++.|.+++.. ... .++|||||||||||++|+++++.+ +.+++.
T Consensus 6 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~ 73 (319)
T 2chq_A 6 IWVEKYRPRTLDEVVGQDEVIQRLKGYVER-----------KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIE 73 (319)
T ss_dssp CTTTTTSCSSGGGSCSCHHHHHHHHTTTTT-----------TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEE
T ss_pred cHHHhcCCCCHHHHhCCHHHHHHHHHHHhC-----------CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEE
Confidence 346788999999999999999999877641 122 349999999999999999999986 346788
Q ss_pred EecCccchh-----hhhhhh------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 280 VSASSLTSK-----WVGEGE------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 280 v~~~~l~~~-----~~g~~~------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
+++++.... .+.... ..-+.++.||+++... ....+.|+..++. .+..+.+|++||.
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~----~~~~~~~i~~~~~ 141 (319)
T 2chq_A 74 MNASDERGIDVVRHKIKEFARTAPIGGAPFKIIFLDEADALT--------ADAQAALRRTMEM----YSKSCRFILSCNY 141 (319)
T ss_dssp EETTSTTCTTTSSHHHHHHHHSCCSSSCCCEEEEEETGGGSC--------HHHHHTTGGGTSS----SSSSEEEEEEESC
T ss_pred EeCccccChHHHHHHHHHHHhcCCCCCCCceEEEEeCCCcCC--------HHHHHHHHHHHHh----cCCCCeEEEEeCC
Confidence 887654211 111111 0124678899985442 2334455555543 3455888999999
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
+..+.+++++||. .+.+++|+.+++..++..++...++.++++.+..|+..+.| ..+.+.++++.++
T Consensus 142 ~~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~i~~~~l~~l~~~~~G-~~r~~~~~l~~~~ 208 (319)
T 2chq_A 142 VSRIIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGVKITEDGLEALIYISGG-DFRKAINALQGAA 208 (319)
T ss_dssp GGGSCHHHHTTCE-EEECCCCCHHHHHHHHHHHHHTTCCCBCHHHHHHHHHTTTT-CHHHHHHHHHHHH
T ss_pred hhhcchHHHhhCe-EEEecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 9999999999997 69999999999999999999998988999999999988887 5556666666554
No 52
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.74 E-value=4e-17 Score=161.81 Aligned_cols=188 Identities=19% Similarity=0.192 Sum_probs=141.9
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEE
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFN 279 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~ 279 (473)
..+++++|.+|++++|++++++.|..++.. .. ..++||+||||||||++|+++++.+. ..++.
T Consensus 14 ~~~~k~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~-~~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~ 81 (327)
T 1iqp_A 14 PWVEKYRPQRLDDIVGQEHIVKRLKHYVKT-----------GS-MPHLLFAGPPGVGKTTAALALARELFGENWRHNFLE 81 (327)
T ss_dssp CHHHHTCCCSTTTCCSCHHHHHHHHHHHHH-----------TC-CCEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEE
T ss_pred chhhccCCCCHHHhhCCHHHHHHHHHHHHc-----------CC-CCeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEE
Confidence 445678999999999999999999988752 12 23599999999999999999999863 34788
Q ss_pred EecCccchh-----hhhhhhh------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC
Q 012000 280 VSASSLTSK-----WVGEGEK------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK 348 (473)
Q Consensus 280 v~~~~l~~~-----~~g~~~~------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~ 348 (473)
+++++.... .+..... .-+.++.||+++... ....+.|+..++.. ...+.+|++||.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~L~~~le~~----~~~~~~i~~~~~ 149 (327)
T 1iqp_A 82 LNASDERGINVIREKVKEFARTKPIGGASFKIIFLDEADALT--------QDAQQALRRTMEMF----SSNVRFILSCNY 149 (327)
T ss_dssp EETTCHHHHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGSC--------HHHHHHHHHHHHHT----TTTEEEEEEESC
T ss_pred eeccccCchHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcCC--------HHHHHHHHHHHHhc----CCCCeEEEEeCC
Confidence 887654221 1111100 125688899995442 23445566666532 344778889999
Q ss_pred CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 349 PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 349 ~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
+..+.+++.+||. .+.+++|+.++...++...+...++.++++.+..|+..+.| +.+.+.++++.++.
T Consensus 150 ~~~l~~~l~sr~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~g-~~r~~~~~l~~~~~ 217 (327)
T 1iqp_A 150 SSKIIEPIQSRCA-IFRFRPLRDEDIAKRLRYIAENEGLELTEEGLQAILYIAEG-DMRRAINILQAAAA 217 (327)
T ss_dssp GGGSCHHHHHTEE-EEECCCCCHHHHHHHHHHHHHTTTCEECHHHHHHHHHHHTT-CHHHHHHHHHHHHT
T ss_pred ccccCHHHHhhCc-EEEecCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHCCC-CHHHHHHHHHHHHh
Confidence 9999999999997 58999999999999999999888888899999999999988 66666677776653
No 53
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.74 E-value=1.2e-16 Score=161.79 Aligned_cols=214 Identities=19% Similarity=0.144 Sum_probs=150.5
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecC
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSAS 283 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~ 283 (473)
...++++|.+...+.|..++...+. ...+.+++|+||||||||++|+++++++ +..++.+++.
T Consensus 16 ~~p~~~~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (387)
T 2v1u_A 16 YVPDVLPHREAELRRLAEVLAPALR--------GEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNAR 87 (387)
T ss_dssp CCCSCCTTCHHHHHHHHHTTGGGTS--------SCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETT
T ss_pred cCCCCCCCHHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECC
Confidence 3448999999999999987742211 2335689999999999999999999988 8889999976
Q ss_pred ccchhh--------------------hhh----hhhh-----hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC
Q 012000 284 SLTSKW--------------------VGE----GEKL-----VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS 334 (473)
Q Consensus 284 ~l~~~~--------------------~g~----~~~~-----~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~ 334 (473)
...+.. ... .... .+.+++|||++...... .....+..++..+.....
T Consensus 88 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~---~~~~~l~~l~~~~~~~~~ 164 (387)
T 2v1u_A 88 HRETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP---GGQDLLYRITRINQELGD 164 (387)
T ss_dssp TSCSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST---THHHHHHHHHHGGGCC--
T ss_pred cCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC---CCChHHHhHhhchhhcCC
Confidence 532210 001 0001 13478899996543211 022334444444432210
Q ss_pred CCCCcEEEEeecCCC---CCCCHHHhccccc-ccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---CCC
Q 012000 335 NPNDLVIVMGATNKP---QELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE---GYS 405 (473)
Q Consensus 335 ~~~~~v~vI~tTn~~---~~Ld~al~rRf~~-~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~---g~s 405 (473)
..++.+|++||.+ ..+++.+++||.. .+.+++|+.+++..++...+.. .+..++++.+..++..+. | .
T Consensus 165 --~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~ 241 (387)
T 2v1u_A 165 --RVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHG-D 241 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSC-C
T ss_pred --CceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcc-C
Confidence 3457899999887 7789999999975 7999999999999999988764 455667888999999888 7 5
Q ss_pred HHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 406 GSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
++.+.++|+.|+..+..+ ....|+.+|+..++..+
T Consensus 242 ~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 242 ARRALDLLRVAGEIAERR-----------REERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHHHT-----------TCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHc-----------CCCCcCHHHHHHHHHHH
Confidence 778888999887766432 12458888888888765
No 54
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.73 E-value=1.5e-17 Score=161.61 Aligned_cols=216 Identities=18% Similarity=0.194 Sum_probs=141.4
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh-----
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW----- 289 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~----- 289 (473)
.+.++|.....+.+....... ...+......++.++||+||||||||++|+++|++++.+|+.+++++.....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l--~~~l~~~~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELL--VQQTKNSDRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHH--HHHHHHCSSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHH--HHHHhccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 345677766665555532110 0111111245568999999999999999999999999999999876422111
Q ss_pred -------hhhhhhhhcceeeeeccccccccC--cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCH-HHhcc
Q 012000 290 -------VGEGEKLVRTLFMIDSIMSTRMAN--ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDD-AVLRR 359 (473)
Q Consensus 290 -------~g~~~~~~~~if~IDei~~~~~~~--~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~-al~rR 359 (473)
+......-..+++|||++...... .......+...|...+++... ....++||+|||.++.+++ .+++|
T Consensus 110 ~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~-~~~~~~ii~ttn~~~~l~~~~l~~r 188 (272)
T 1d2n_A 110 CQAMKKIFDDAYKSQLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPP-QGRKLLIIGTTSRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHHHHTSSEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCS-TTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhcCCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccC-CCCCEEEEEecCChhhcchhhhhcc
Confidence 111111225688899997652211 122334566667777765532 3456899999999988888 67889
Q ss_pred cccccccCCCcH-HHHHHHHHHHhccCCCCCChhhHHHHHHHcCCC----CHHHHHHHHHHHHHHhHHHhcccccccccc
Q 012000 360 LVKRIYVPLPDE-NVRRLLLKHKLKGQAFSLPGGDLERLVRETEGY----SGSDLQALCEEAAMMPIRELGTNILTVKAN 434 (473)
Q Consensus 360 f~~~i~~~~P~~-~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~----s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~ 434 (473)
|...+.+|.++. ++...++.. .. .++++++..++..+.|| ..+++.++++.|...+
T Consensus 189 f~~~i~~p~l~~r~~i~~i~~~---~~--~~~~~~~~~l~~~~~g~~~~g~ir~l~~~l~~a~~~~-------------- 249 (272)
T 1d2n_A 189 FSTTIHVPNIATGEQLLEALEL---LG--NFKDKERTTIAQQVKGKKVWIGIKKLLMLIEMSLQMD-------------- 249 (272)
T ss_dssp SSEEEECCCEEEHHHHHHHHHH---HT--CSCHHHHHHHHHHHTTSEEEECHHHHHHHHHHHTTSC--------------
T ss_pred cceEEcCCCccHHHHHHHHHHh---cC--CCCHHHHHHHHHHhcCCCccccHHHHHHHHHHHhhhc--------------
Confidence 998888877665 444444443 22 35788999999999997 5777888887775432
Q ss_pred cCCCCcHHHHHHHHHhhCCC
Q 012000 435 QLRPLRYEDFQKAMAVIRPS 454 (473)
Q Consensus 435 ~~~~it~~df~~al~~~~ps 454 (473)
.....++|..++.....+
T Consensus 250 --~~~~~~~~~~~l~~~~~~ 267 (272)
T 1d2n_A 250 --PEYRVRKFLALLREEGAS 267 (272)
T ss_dssp --GGGHHHHHHHHHHHTSCC
T ss_pred --hHHHHHHHHHHHHHcCCc
Confidence 124567888888776543
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.73 E-value=5.8e-17 Score=163.88 Aligned_cols=189 Identities=24% Similarity=0.300 Sum_probs=140.9
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC----------
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA---------- 275 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~---------- 275 (473)
+.++++|.+|++++|.+.+++.|...+.. ...++.+||+||||||||++|+++|+.++.
T Consensus 6 l~~k~rp~~~~~~vg~~~~~~~L~~~l~~-----------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~ 74 (373)
T 1jr3_A 6 LARKWRPQTFADVVGQEHVLTALANGLSL-----------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCG 74 (373)
T ss_dssp HHHHTCCCSTTTSCSCHHHHHHHHHHHHH-----------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCS
T ss_pred HHHhhCCCchhhccCcHHHHHHHHHHHHh-----------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCc
Confidence 34568899999999999999999988741 223457999999999999999999998754
Q ss_pred --------------cEEEEecCccc-----hhhhhhhh----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 276 --------------TFFNVSASSLT-----SKWVGEGE----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 276 --------------~~~~v~~~~l~-----~~~~g~~~----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
.++.+++..-. ........ ..-+.++.||+++... ....+.|+..++.
T Consensus 75 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l~--------~~~~~~Ll~~le~- 145 (373)
T 1jr3_A 75 VCDNCREIEQGRFVDLIEIDAASRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHMLS--------RHSFNALLKTLEE- 145 (373)
T ss_dssp SSHHHHHHHTSCCSSCEEEETTCSCCSSCHHHHHHHTTSCCSSSSSEEEEEECGGGSC--------HHHHHHHHHHHHS-
T ss_pred ccHHHHHHhccCCCceEEecccccCCHHHHHHHHHHHhhccccCCeEEEEEECcchhc--------HHHHHHHHHHHhc-
Confidence 23444433210 00011000 0113578899985432 3345667777763
Q ss_pred CCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 333 TSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 333 ~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
++..+++|++|+.+..+.+.+++|| ..+.++.|+.++...++..++...++.++++.+..|+..+.| +.+++.++
T Consensus 146 ---~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~~~~~~a~~~l~~~~~G-~~r~~~~~ 220 (373)
T 1jr3_A 146 ---PPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHIAHEPRALQLLARAAEG-SLRDALSL 220 (373)
T ss_dssp ---CCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHSSS-CHHHHHHH
T ss_pred ---CCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHCCC-CHHHHHHH
Confidence 3455888888999999999999998 568999999999999999999888888889999999999988 68888888
Q ss_pred HHHHHHH
Q 012000 413 CEEAAMM 419 (473)
Q Consensus 413 ~~~A~~~ 419 (473)
++.+...
T Consensus 221 l~~~~~~ 227 (373)
T 1jr3_A 221 TDQAIAS 227 (373)
T ss_dssp HHHHHHH
T ss_pred HHHHHHh
Confidence 8877543
No 56
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.73 E-value=2.3e-17 Score=162.91 Aligned_cols=197 Identities=17% Similarity=0.254 Sum_probs=143.6
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh----
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK---- 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~---- 288 (473)
++++|++.+++.|...+...... ......|..++||+||||||||++|+++|..+ +.+++.++++.+...
T Consensus 17 ~~i~G~~~~~~~l~~~i~~~~~~---~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (311)
T 4fcw_A 17 KRVVGQDEAIRAVADAIRRARAG---LKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS 93 (311)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHT---CSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH
T ss_pred hhcCCHHHHHHHHHHHHHHHhcC---CCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH
Confidence 46889999999999888632110 11122344679999999999999999999987 567999988765332
Q ss_pred -hhh------------hhhh----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCC-------CCcEEEEe
Q 012000 289 -WVG------------EGEK----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------NDLVIVMG 344 (473)
Q Consensus 289 -~~g------------~~~~----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~-------~~~v~vI~ 344 (473)
++| .... .-..+++|||++.. .....+.|+..|+...... -.++++|+
T Consensus 94 ~l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l--------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 94 RLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA--------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS--------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred HhcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc--------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 111 0111 11368889999543 3456667777765432111 12577999
Q ss_pred ecCC--------------------------CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc---------CCCCC
Q 012000 345 ATNK--------------------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFSL 389 (473)
Q Consensus 345 tTn~--------------------------~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---------~~~~l 389 (473)
|||. ...+++++++||+..+.+++|+.+++..|+++++.. ..+.+
T Consensus 166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~ 245 (311)
T 4fcw_A 166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAEKRISLEL 245 (311)
T ss_dssp EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHTTTCEEEE
T ss_pred ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHhCCcEEEe
Confidence 9998 457899999999988999999999999999988764 23456
Q ss_pred ChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 390 PGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 390 ~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
++..+..|+.... .+..++|.++++.++..++.+
T Consensus 246 ~~~~~~~l~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 281 (311)
T 4fcw_A 246 TEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 281 (311)
T ss_dssp CHHHHHHHHHHSCBTTTBTTTHHHHHHHHTHHHHHH
T ss_pred CHHHHHHHHHhCCCccCCchhHHHHHHHHHHHHHHH
Confidence 8899999999876 568999999999988877654
No 57
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=7.5e-17 Score=159.56 Aligned_cols=185 Identities=13% Similarity=0.104 Sum_probs=137.5
Q ss_pred ccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEe
Q 012000 207 VDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----QATFFNVS 281 (473)
Q Consensus 207 v~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~ 281 (473)
.++++|.+|++++|.+.+++.|.+++.. ...+ ++|||||||||||++|+++++.+ +..++.++
T Consensus 12 ~~~~~p~~~~~~~g~~~~~~~l~~~l~~-----------~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~ 79 (323)
T 1sxj_B 12 VEKYRPQVLSDIVGNKETIDRLQQIAKD-----------GNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELN 79 (323)
T ss_dssp HHHTCCSSGGGCCSCTHHHHHHHHHHHS-----------CCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEEC
T ss_pred HHhcCCCCHHHHHCCHHHHHHHHHHHHc-----------CCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEec
Confidence 4567889999999999999999988741 2223 49999999999999999999986 45688888
Q ss_pred cCccch-----hhhhhhh-------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 282 ASSLTS-----KWVGEGE-------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 282 ~~~l~~-----~~~g~~~-------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
+++... ..+.... ..-+.++.||+++.... ...+.|+..++. +...+.+|++||.+
T Consensus 80 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~~--------~~~~~L~~~le~----~~~~~~~il~~~~~ 147 (323)
T 1sxj_B 80 ASDDRGIDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMTA--------GAQQALRRTMEL----YSNSTRFAFACNQS 147 (323)
T ss_dssp TTSCCSHHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSCH--------HHHHTTHHHHHH----TTTTEEEEEEESCG
T ss_pred CccccChHHHHHHHHHHHhccccCCCCCceEEEEECcccCCH--------HHHHHHHHHHhc----cCCCceEEEEeCCh
Confidence 765321 1111111 11256888999955432 234445555553 23447788889999
Q ss_pred CCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHH
Q 012000 350 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAA 417 (473)
Q Consensus 350 ~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~ 417 (473)
..+.+++++||. .+.+++|+.++...++...+...++.++++.+..|+..+.| ..+.+.++++.++
T Consensus 148 ~~l~~~l~sr~~-~i~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~G-~~r~a~~~l~~~~ 213 (323)
T 1sxj_B 148 NKIIEPLQSQCA-ILRYSKLSDEDVLKRLLQIIKLEDVKYTNDGLEAIIFTAEG-DMRQAINNLQSTV 213 (323)
T ss_dssp GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHTT-CHHHHHHHHHHHH
T ss_pred hhchhHHHhhce-EEeecCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHHH
Confidence 999999999997 69999999999999999998877888889999999999988 4555555555554
No 58
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=1.5e-17 Score=174.15 Aligned_cols=182 Identities=22% Similarity=0.282 Sum_probs=130.6
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------C
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~ 274 (473)
.+.++.++.+|++|+|.+..++.+.+.+.. ....++||+||||||||++|+++|..+ +
T Consensus 169 ~l~~~~r~~~ld~iiGr~~~i~~l~~~l~r------------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~ 236 (468)
T 3pxg_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (468)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHhcCCCCCccCcHHHHHHHHHHHhc------------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcC
Confidence 444556788999999999999999887742 224689999999999999999999996 7
Q ss_pred CcEEEEecCccchhhhhhhhhh-----------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEE
Q 012000 275 ATFFNVSASSLTSKWVGEGEKL-----------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 343 (473)
Q Consensus 275 ~~~~~v~~~~l~~~~~g~~~~~-----------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI 343 (473)
.+++.+++. ..+.|+.+.. -+.+++|| + .....+.|+..|. .+.+.||
T Consensus 237 ~~~~~l~~~---~~~~g~~e~~~~~~~~~~~~~~~~iLfiD--------~----~~~a~~~L~~~L~------~g~v~vI 295 (468)
T 3pxg_A 237 KRVMTLDMG---TKYRGEFEDRLKKVMDEIRQAGNIILFID--------A----AIDASNILKPSLA------RGELQCI 295 (468)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--------C------------CCCTT------SSSCEEE
T ss_pred CeEEEeeCC---ccccchHHHHHHHHHHHHHhcCCeEEEEe--------C----chhHHHHHHHhhc------CCCEEEE
Confidence 888888876 3344433222 24577788 0 1112233333332 3358899
Q ss_pred eecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCCCC-----HHHH
Q 012000 344 GATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEGYS-----GSDL 409 (473)
Q Consensus 344 ~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g~s-----~~dL 409 (473)
++||.+. .+++++++||.. +.|+.|+.+++..|++.++.. +++.+++..+..++..+.+|. +...
T Consensus 296 ~at~~~e~~~~~~~~~al~~Rf~~-i~v~~p~~e~~~~iL~~~~~~~~~~~~~~i~~~al~~l~~~s~~~~~~~~lp~~a 374 (468)
T 3pxg_A 296 GATTLDEYRKYIEKDAALERRFQP-IQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (468)
T ss_dssp EECCTTTTHHHHTTCSHHHHSEEE-EECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred ecCCHHHHHHHhhcCHHHHHhCcc-ceeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhccCcCCcHH
Confidence 9999987 689999999985 999999999999999988876 678889999999998877655 4477
Q ss_pred HHHHHHHHHHh
Q 012000 410 QALCEEAAMMP 420 (473)
Q Consensus 410 ~~l~~~A~~~a 420 (473)
..+++.|+..+
T Consensus 375 i~ll~~a~~~~ 385 (468)
T 3pxg_A 375 IDLIDEAGSKV 385 (468)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 78888777554
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.70 E-value=1e-16 Score=163.02 Aligned_cols=228 Identities=18% Similarity=0.209 Sum_probs=151.5
Q ss_pred cccChHHHHHHHHHHHhchhcchhh------------------hhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDL------------------FTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~------------------~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
+|+|++.+++.|..++..+..+... ......++.++||+||||||||++|+++|+.++.+|+
T Consensus 22 ~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~~ 101 (376)
T 1um8_A 22 YVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPIA 101 (376)
T ss_dssp TCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEE
T ss_pred HccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 5899999999999988544333221 1123445678999999999999999999999999999
Q ss_pred EEecCccc-hhhhhhh----------------hhhhcceeeeeccccccccCc------chHHHHHHHHHHHHhcCcCC-
Q 012000 279 NVSASSLT-SKWVGEG----------------EKLVRTLFMIDSIMSTRMANE------NDASRRLKSEFLIQFDGVTS- 334 (473)
Q Consensus 279 ~v~~~~l~-~~~~g~~----------------~~~~~~if~IDei~~~~~~~~------~~~~~~~~~~ll~~ldg~~~- 334 (473)
.+++..+. ..+.|.. ...-..+++|||++....... +.....+.+.|+..|++...
T Consensus 102 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~ 181 (376)
T 1um8_A 102 ISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLVN 181 (376)
T ss_dssp EEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEEC
T ss_pred EecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhcccee
Confidence 99988764 2333322 112357888999977544311 11112367788888875310
Q ss_pred ---C-------------CCCcEEEEeecCC-----------------------------------------CCCCCHHHh
Q 012000 335 ---N-------------PNDLVIVMGATNK-----------------------------------------PQELDDAVL 357 (473)
Q Consensus 335 ---~-------------~~~~v~vI~tTn~-----------------------------------------~~~Ld~al~ 357 (473)
. ...++++|+++|. ...+.++++
T Consensus 182 ~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l~ 261 (376)
T 1um8_A 182 IPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPELI 261 (376)
T ss_dssp ---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHHH
T ss_pred cccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHHh
Confidence 0 0133577777762 123678899
Q ss_pred cccccccccCCCcHHHHHHHHHH----H-------h--ccCCCCCChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHH
Q 012000 358 RRLVKRIYVPLPDENVRRLLLKH----K-------L--KGQAFSLPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIR 422 (473)
Q Consensus 358 rRf~~~i~~~~P~~~~r~~il~~----~-------l--~~~~~~l~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~ 422 (473)
+||+.++.|++++.++...++.. + + ....+.++++.+..|+..+. ....+.|.++++.++..++.
T Consensus 262 ~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~le~~~~~~~~ 341 (376)
T 1um8_A 262 GRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQLFKMDEVDLIFEEEAIKEIAQLALERKTGARGLRAIIEDFCLDIMF 341 (376)
T ss_dssp TTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHTTCTGGGHHHHHHHHHHHHHH
T ss_pred cCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHHHhhcCceEEECHHHHHHHHHHhcccccCcHHHHHHHHHHHHHHHh
Confidence 99988899999999999988862 1 1 12345578899999998855 34789999999999888777
Q ss_pred HhcccccccccccCCCCcHHHHHHHHH
Q 012000 423 ELGTNILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 423 ~~~~~~~~~~~~~~~~it~~df~~al~ 449 (473)
+.... ......|+.+++..+++
T Consensus 342 ~~~~~-----~~~~~~i~~~~v~~~~~ 363 (376)
T 1um8_A 342 DLPKL-----KGSEVRITKDCVLKQAE 363 (376)
T ss_dssp TGGGG-----TTSEEEECHHHHTTSSC
T ss_pred hccCC-----CCCEEEEeHHHhcCCCC
Confidence 64321 11223588888877543
No 60
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.69 E-value=2.3e-16 Score=158.72 Aligned_cols=191 Identities=15% Similarity=0.177 Sum_probs=136.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC---------
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA--------- 275 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~--------- 275 (473)
..+++++|.+|++++|++.+++.|+.++.. ....+. ++|+||||||||++++++|+++..
T Consensus 3 ~w~~kyrP~~~~~~vg~~~~~~~l~~~~~~----------~~~~~~-~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~ 71 (354)
T 1sxj_E 3 LWVDKYRPKSLNALSHNEELTNFLKSLSDQ----------PRDLPH-LLLYGPNGTGKKTRCMALLESIFGPGVYRLKID 71 (354)
T ss_dssp -CTTTTCCCSGGGCCSCHHHHHHHHTTTTC----------TTCCCC-EEEECSTTSSHHHHHHTHHHHHSCTTCCC----
T ss_pred cchhccCCCCHHHhcCCHHHHHHHHHHHhh----------CCCCCe-EEEECCCCCCHHHHHHHHHHHHcCCCCCeEEec
Confidence 356889999999999999999999877610 122234 999999999999999999996411
Q ss_pred --------------------cEEEEecCccch-------hhhhhhh--------------hhhcceeeeeccccccccCc
Q 012000 276 --------------------TFFNVSASSLTS-------KWVGEGE--------------KLVRTLFMIDSIMSTRMANE 314 (473)
Q Consensus 276 --------------------~~~~v~~~~l~~-------~~~g~~~--------------~~~~~if~IDei~~~~~~~~ 314 (473)
.++.+++.+... ..+.... ..-+.++.|||++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L----- 146 (354)
T 1sxj_E 72 VRQFVTASNRKLELNVVSSPYHLEITPSDMGNNDRIVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL----- 146 (354)
T ss_dssp --------------CCEECSSEEEECCC----CCHHHHHHHHHHHTTTTC------------CCEEEEEECTTSS-----
T ss_pred ceeecccccccceeeeecccceEEecHhhcCCcchHHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc-----
Confidence 234444332111 0111100 012348889998542
Q ss_pred chHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCC-hhh
Q 012000 315 NDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLP-GGD 393 (473)
Q Consensus 315 ~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~-~~~ 393 (473)
.....+.++..++.. ..++.+|.+|+.+..+.+++++|| ..+.|++|+.+++..+++..+...++.++ ++.
T Consensus 147 ---~~~~~~~L~~~le~~----~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 218 (354)
T 1sxj_E 147 ---TKDAQAALRRTMEKY----SKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQLETKDI 218 (354)
T ss_dssp ---CHHHHHHHHHHHHHS----TTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCEECCSHH
T ss_pred ---CHHHHHHHHHHHHhh----cCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCCCCcHHH
Confidence 223345566666543 234778888999999999999999 56999999999999999999988888888 999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHh
Q 012000 394 LERLVRETEGYSGSDLQALCEEAAMMP 420 (473)
Q Consensus 394 l~~La~~t~g~s~~dL~~l~~~A~~~a 420 (473)
+..|+..+.| +.+++.++++.++...
T Consensus 219 l~~i~~~~~G-~~r~a~~~l~~~~~~~ 244 (354)
T 1sxj_E 219 LKRIAQASNG-NLRVSLLMLESMALNN 244 (354)
T ss_dssp HHHHHHHHTT-CHHHHHHHHTHHHHTT
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHHhC
Confidence 9999999988 6777777777766543
No 61
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.69 E-value=4.2e-16 Score=158.18 Aligned_cols=203 Identities=15% Similarity=0.118 Sum_probs=145.3
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-----------CCcEEEEecCc
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-----------QATFFNVSASS 284 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-----------~~~~~~v~~~~ 284 (473)
++++|.+..++.|.+++..... ...+++++|+||||||||++|+++++++ +.+++.+++..
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~--------~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~ 91 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK--------NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCRE 91 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT--------TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHH
T ss_pred CCCCChHHHHHHHHHHHHHHHc--------CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECcc
Confidence 7899999999999988753221 2335689999999999999999999987 88999998764
Q ss_pred cc-h----------hh---------------hhhhhhh---hcceeeeeccccccccCcchHHHHH-HHHHHHHhcCcCC
Q 012000 285 LT-S----------KW---------------VGEGEKL---VRTLFMIDSIMSTRMANENDASRRL-KSEFLIQFDGVTS 334 (473)
Q Consensus 285 l~-~----------~~---------------~g~~~~~---~~~if~IDei~~~~~~~~~~~~~~~-~~~ll~~ldg~~~ 334 (473)
.. . .. ....... .+.++.|||++....... ... +..++...
T Consensus 92 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~vlilDEi~~l~~~~~----~~~~l~~l~~~~----- 162 (384)
T 2qby_B 92 VGGTPQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRNIRAIIYLDEVDTLVKRRG----GDIVLYQLLRSD----- 162 (384)
T ss_dssp HCSCHHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSSSCEEEEEETTHHHHHSTT----SHHHHHHHHTSS-----
T ss_pred CCCCHHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhccCCCEEEEECHHHhccCCC----CceeHHHHhcCC-----
Confidence 32 1 00 0000000 112888999965432210 111 22222211
Q ss_pred CCCCcEEEEeecCCC---CCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---CCCH
Q 012000 335 NPNDLVIVMGATNKP---QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE---GYSG 406 (473)
Q Consensus 335 ~~~~~v~vI~tTn~~---~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~---g~s~ 406 (473)
.++.||++||.+ ..+++++++||...+.+++|+.++...++...+.. .+..++++.+..+++.+. | ..
T Consensus 163 ---~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G-~~ 238 (384)
T 2qby_B 163 ---ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHG-DA 238 (384)
T ss_dssp ---SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCC-CH
T ss_pred ---cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccC-CH
Confidence 458899999887 67899999999889999999999999999998763 345667888999999887 6 56
Q ss_pred HHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 407 SDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 407 ~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+.+.++|+.|...+. ....|+.+|+..++....
T Consensus 239 r~a~~~l~~a~~~a~-------------~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 239 RKAVNLLFRAAQLAS-------------GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp HHHHHHHHHHHHHTT-------------SSSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-------------CCCccCHHHHHHHHHHHh
Confidence 777788888876652 125688888888887754
No 62
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.68 E-value=1e-15 Score=153.50 Aligned_cols=185 Identities=16% Similarity=0.176 Sum_probs=134.0
Q ss_pred cccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEEE
Q 012000 206 IVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ-----ATFFNV 280 (473)
Q Consensus 206 iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~v 280 (473)
.+++++|.+|++++|++.+++.|...+. .+..+ ++||+||||||||++|+++|+.+. ..++.+
T Consensus 15 ~~~k~rp~~~~~~~g~~~~~~~L~~~i~-----------~g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~ 82 (340)
T 1sxj_C 15 WVEKYRPETLDEVYGQNEVITTVRKFVD-----------EGKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLEL 82 (340)
T ss_dssp HHHHTCCSSGGGCCSCHHHHHHHHHHHH-----------TTCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEE
T ss_pred hHHHhCCCcHHHhcCcHHHHHHHHHHHh-----------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEE
Confidence 4456789999999999999999988874 12223 499999999999999999999863 346777
Q ss_pred ecCccch-----hhhhhhhh------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 281 SASSLTS-----KWVGEGEK------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 281 ~~~~l~~-----~~~g~~~~------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
++++... ..++.... .-..++.||+++... ....+.|+..++.. +..+.+|++||.+
T Consensus 83 ~~~~~~~~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~--------~~~~~~L~~~le~~----~~~~~~il~~n~~ 150 (340)
T 1sxj_C 83 NASDDRGIDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT--------NAAQNALRRVIERY----TKNTRFCVLANYA 150 (340)
T ss_dssp CTTSCCSHHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC--------HHHHHHHHHHHHHT----TTTEEEEEEESCG
T ss_pred cCcccccHHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC--------HHHHHHHHHHHhcC----CCCeEEEEEecCc
Confidence 7665311 01111110 014677899985443 23345566666633 3446778889999
Q ss_pred CCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHH
Q 012000 350 QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEA 416 (473)
Q Consensus 350 ~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A 416 (473)
..+.+++++||. .+.++.++.++....+...+...++.+++..+..++..+.| ..+.+.++++.+
T Consensus 151 ~~i~~~i~sR~~-~~~~~~l~~~~~~~~l~~~~~~~~~~i~~~~~~~i~~~s~G-~~r~~~~~l~~~ 215 (340)
T 1sxj_C 151 HKLTPALLSQCT-RFRFQPLPQEAIERRIANVLVHEKLKLSPNAEKALIELSNG-DMRRVLNVLQSC 215 (340)
T ss_dssp GGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHTTTCCBCHHHHHHHHHHHTT-CHHHHHHHTTTT
T ss_pred cccchhHHhhce-eEeccCCCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 999999999997 58888888899999999888878888899999999999888 444444444433
No 63
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.67 E-value=5.6e-15 Score=149.87 Aligned_cols=220 Identities=14% Similarity=0.072 Sum_probs=155.1
Q ss_pred CcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCc--eEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecCccch
Q 012000 214 KWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPAR--GLLLFGPPGNGKTMLAKAVASES----QATFFNVSASSLTS 287 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~--~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~~l~~ 287 (473)
..++++|.+...+.|.+++..... + ..+. +++|+||||||||++++++++.+ +..++.+++.....
T Consensus 15 ~p~~l~gr~~~~~~l~~~l~~~~~------~--~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~ 86 (389)
T 1fnn_A 15 VPKRLPHREQQLQQLDILLGNWLR------N--PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRN 86 (389)
T ss_dssp CCSCCTTCHHHHHHHHHHHHHHHH------S--TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCS
T ss_pred CCCCCCChHHHHHHHHHHHHHHHc------C--CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCC
Confidence 348899999999999988853221 1 1233 89999999999999999999988 67888888765432
Q ss_pred h--hh--------------h----hh----h-----hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 288 K--WV--------------G----EG----E-----KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 288 ~--~~--------------g----~~----~-----~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
. .+ + .. . ..-+.++.|||++.. .......|+..++........
T Consensus 87 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l--------~~~~~~~L~~~~~~~~~~~~~ 158 (389)
T 1fnn_A 87 FTAIIGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL--------APDILSTFIRLGQEADKLGAF 158 (389)
T ss_dssp HHHHHHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS--------CHHHHHHHHHHTTCHHHHSSC
T ss_pred HHHHHHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc--------chHHHHHHHHHHHhCCCCCcC
Confidence 1 00 0 00 0 011347889999554 234555666666543210013
Q ss_pred cEEEEeecCCC---CCCCHHHhccccc-ccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHc---------CC
Q 012000 339 LVIVMGATNKP---QELDDAVLRRLVK-RIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRET---------EG 403 (473)
Q Consensus 339 ~v~vI~tTn~~---~~Ld~al~rRf~~-~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t---------~g 403 (473)
++.||++||.+ ..+++.+.+||.. .+.+++++.++...++...+.. ....++++.+..++..+ .|
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G 238 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRG 238 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSC
T ss_pred CEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCC
Confidence 58889999888 6789999999985 7999999999999999988764 22356889999999999 55
Q ss_pred CCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCHHHHH
Q 012000 404 YSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWE 461 (473)
Q Consensus 404 ~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~ 461 (473)
..+.+.++|+.|+..+..+ ....|+.+|+..++....+....+.+.
T Consensus 239 -~~r~~~~~l~~a~~~a~~~-----------~~~~i~~~~v~~~~~~~~~~~~~~~l~ 284 (389)
T 1fnn_A 239 -DARLAIDILYRSAYAAQQN-----------GRKHIAPEDVRKSSKEVLFGISEEVLI 284 (389)
T ss_dssp -CHHHHHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHHSCCCCHHHHH
T ss_pred -cHHHHHHHHHHHHHHHHHh-----------CCCCcCHHHHHHHHHHHhhhhHHHHHH
Confidence 5788888999888776443 124578888888888776655444333
No 64
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=7.1e-16 Score=170.87 Aligned_cols=217 Identities=19% Similarity=0.226 Sum_probs=150.9
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------CCcEEE
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFN 279 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~~ 279 (473)
.++-+|++++|.++.++.+.+.+. .....++||+||||||||++|+++|..+ +..++.
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~------------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~ 247 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC------------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYS 247 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT------------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEE
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh------------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEE
Confidence 346689999999999999888774 1235689999999999999999999987 677888
Q ss_pred EecCccc--hhhhhhhhhhh-----------cceeeeeccccccccCcch-HHHHHHHHHHHHhcCcCCCCCCcEEEEee
Q 012000 280 VSASSLT--SKWVGEGEKLV-----------RTLFMIDSIMSTRMANEND-ASRRLKSEFLIQFDGVTSNPNDLVIVMGA 345 (473)
Q Consensus 280 v~~~~l~--~~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~-~~~~~~~~ll~~ldg~~~~~~~~v~vI~t 345 (473)
++...+. ..+.|..+..+ +.+++|||++.....+... ......+.| ..+.. ...+.+|++
T Consensus 248 ~~~~~l~~~~~~~g~~e~~l~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~~~~~~~~~~L----~~~l~--~~~~~~I~a 321 (758)
T 1r6b_X 248 LDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLI----KPLLS--SGKIRVIGS 321 (758)
T ss_dssp CCCC---CCCCCSSCHHHHHHHHHHHHSSSSCEEEEETTTTTTTTSCCSSSCHHHHHHHH----SSCSS--SCCCEEEEE
T ss_pred EcHHHHhccccccchHHHHHHHHHHHHHhcCCeEEEEechHHHhhcCCCCcchHHHHHHH----HHHHh--CCCeEEEEE
Confidence 8776665 23444433222 3678899998764433221 122222222 22221 234788888
Q ss_pred cCCC-----CCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcCC-----CCHHHHHH
Q 012000 346 TNKP-----QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETEG-----YSGSDLQA 411 (473)
Q Consensus 346 Tn~~-----~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~g-----~s~~dL~~ 411 (473)
||.+ ..+|+++.+||. .+.|+.|+.+++..+|+.++.. +++.+++..+..++..+.| +.+..+..
T Consensus 322 t~~~~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~v~~~~~al~~~~~~s~~~i~~~~lp~~~i~ 400 (758)
T 1r6b_X 322 TTYQEFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAID 400 (758)
T ss_dssp ECHHHHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHCTTSCTTHHHHH
T ss_pred eCchHHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhhhcccccCchHHHH
Confidence 8864 357899999998 5999999999999999987754 5677788888888887665 45667888
Q ss_pred HHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 412 LCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 412 l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
++.+|+..+... . .......|+.+|+..++....
T Consensus 401 lld~a~~~~~~~--~-----~~~~~~~v~~~di~~~~~~~~ 434 (758)
T 1r6b_X 401 VIDEAGARARLM--P-----VSKRKKTVNVADIESVVARIA 434 (758)
T ss_dssp HHHHHHHHHHHS--S-----SCCCCCSCCHHHHHHHHHHHS
T ss_pred HHHHHHHHHhcc--c-----ccccCCccCHHHHHHHHHHhc
Confidence 888876543221 1 011235689999999998864
No 65
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.65 E-value=7.9e-16 Score=170.43 Aligned_cols=198 Identities=16% Similarity=0.207 Sum_probs=145.9
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhh
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVG 291 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g 291 (473)
.++|+|++.+++.|.+.+...... ......|..++||+||||||||++|+++|+.+ +.+|+.++++++...+..
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~---~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~ 566 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAG---LKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHST 566 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTT---CSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCC
T ss_pred hCcCcChHHHHHHHHHHHHHHHcc---cCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhccccccc
Confidence 357899999999999988642211 11112333479999999999999999999997 689999999988765432
Q ss_pred h-------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC-------CCCcEEEEeecCCCCC------
Q 012000 292 E-------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN-------PNDLVIVMGATNKPQE------ 351 (473)
Q Consensus 292 ~-------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~-------~~~~v~vI~tTn~~~~------ 351 (473)
. ....-..+++|||++. ....+.+.|+..|+.-... ...+++||+|||.+..
T Consensus 567 ~~~~l~~~~~~~~~~vl~lDEi~~--------~~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~~~ 638 (758)
T 3pxi_A 567 SGGQLTEKVRRKPYSVVLLDAIEK--------AHPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDKVM 638 (758)
T ss_dssp C---CHHHHHHCSSSEEEEECGGG--------SCHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHHHH
T ss_pred ccchhhHHHHhCCCeEEEEeCccc--------cCHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHHHH
Confidence 1 2223346889999943 3456777788877642211 1235789999997665
Q ss_pred ------CCHHHhcccccccccCCCcHHHHHHHHHHHhcc---------CCCCCChhhHHHHHHH--cCCCCHHHHHHHHH
Q 012000 352 ------LDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFSLPGGDLERLVRE--TEGYSGSDLQALCE 414 (473)
Q Consensus 352 ------Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---------~~~~l~~~~l~~La~~--t~g~s~~dL~~l~~ 414 (473)
+.|++++||+.+|.|++|+.+++..|+..++.. ..+.++++.++.|+.. ...+..++|.++++
T Consensus 639 ~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 639 GELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLKEQDLSIELTDAAKAKVAEEGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp HHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHHTTTCEEEECHHHHHHHHGGGCCTTTTTTTHHHHHH
T ss_pred HHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHHhCCCeEEECHHHHHHHHHhCCCCCCCChHHHHHHH
Confidence 789999999989999999999999999887754 3455688999999875 34567889999999
Q ss_pred HHHHHhHHH
Q 012000 415 EAAMMPIRE 423 (473)
Q Consensus 415 ~A~~~a~~~ 423 (473)
++...++.+
T Consensus 719 ~~v~~~l~~ 727 (758)
T 3pxi_A 719 KHVEDRLSE 727 (758)
T ss_dssp HHTHHHHHH
T ss_pred HHHHHHHHH
Confidence 988777654
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.65 E-value=7.8e-16 Score=170.53 Aligned_cols=196 Identities=17% Similarity=0.218 Sum_probs=145.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh--------
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-------- 288 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-------- 288 (473)
+|+|++++++.|...+..... .......|..++||+||||||||++|+++|..++.+++.++++++...
T Consensus 459 ~v~g~~~~~~~l~~~i~~~~~---g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g 535 (758)
T 1r6b_X 459 LVFGQDKAIEALTEAIKMARA---GLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIG 535 (758)
T ss_dssp TSCSCHHHHHHHHHHHHHHHT---TCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCC
T ss_pred hccCHHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcC
Confidence 478999999888887753211 011123455679999999999999999999999999999999877542
Q ss_pred ----hhhhhh---------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCC--C-----CCcEEEEeecCC
Q 012000 289 ----WVGEGE---------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSN--P-----NDLVIVMGATNK 348 (473)
Q Consensus 289 ----~~g~~~---------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~--~-----~~~v~vI~tTn~ 348 (473)
|+|..+ ..-..+++|||++. ....+.+.|+..|+.-... . -.+++||+|||.
T Consensus 536 ~~~g~~g~~~~~~l~~~~~~~~~~vl~lDEi~~--------~~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN~ 607 (758)
T 1r6b_X 536 APPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEK--------AHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNA 607 (758)
T ss_dssp CCSCSHHHHHTTHHHHHHHHCSSEEEEEETGGG--------SCHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEECS
T ss_pred CCCCCcCccccchHHHHHHhCCCcEEEEeCccc--------cCHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecCc
Confidence 333211 12246889999953 3455778888888732110 0 135789999998
Q ss_pred CC-------------------------CCCHHHhcccccccccCCCcHHHHHHHHHHHhccC---------CCCCChhhH
Q 012000 349 PQ-------------------------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQ---------AFSLPGGDL 394 (473)
Q Consensus 349 ~~-------------------------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~---------~~~l~~~~l 394 (473)
+. .+++++++||+.+|.|++|+.+++..|+..++... .+.++++.+
T Consensus 608 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~a~ 687 (758)
T 1r6b_X 608 GVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEAR 687 (758)
T ss_dssp SCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHHHHHTTEEEEECHHHH
T ss_pred chhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHHHHHCCcEEEeCHHHH
Confidence 54 67899999999889999999999999999887621 345688999
Q ss_pred HHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 395 ERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 395 ~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
..|+.... .+..++|.++++.++..++.+
T Consensus 688 ~~l~~~~~~~~~g~R~l~~~i~~~~~~~l~~ 718 (758)
T 1r6b_X 688 NWLAEKGYDRAMGARPMARVIQDNLKKPLAN 718 (758)
T ss_dssp HHHHHHHCBTTTBTTTHHHHHHHHHTHHHHH
T ss_pred HHHHHhCCCcCCCchHHHHHHHHHHHHHHHH
Confidence 99998653 456899999999988876544
No 67
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.64 E-value=8.1e-17 Score=146.13 Aligned_cols=155 Identities=21% Similarity=0.323 Sum_probs=106.1
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------C
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~ 274 (473)
.+.+++++..|++++|.++..+.+.+.+.. ..+.++||+||||||||++|+++++++ +
T Consensus 11 ~l~~~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~ 78 (195)
T 1jbk_A 11 DLTERAEQGKLDPVIGRDEEIRRTIQVLQR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKG 78 (195)
T ss_dssp EHHHHHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTT
T ss_pred HHHHHHhhccccccccchHHHHHHHHHHhc------------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcC
Confidence 344455678999999999999999887742 235689999999999999999999986 7
Q ss_pred CcEEEEecCccch--hhhhhhhh------------hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcE
Q 012000 275 ATFFNVSASSLTS--KWVGEGEK------------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLV 340 (473)
Q Consensus 275 ~~~~~v~~~~l~~--~~~g~~~~------------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v 340 (473)
.+++.+++..+.. .+.+.... .-+.++.|||++.............+...+...++ ..++
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~l~~~~~------~~~~ 152 (195)
T 1jbk_A 79 RRVLALDMGALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADGAMDAGNMLKPALA------RGEL 152 (195)
T ss_dssp CEEEEECHHHHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT------CCCCHHHHHHHHH------TTSC
T ss_pred CcEEEeeHHHHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccchHHHHHHHHHhhc------cCCe
Confidence 8888888766542 22222111 11347889999776432211111111222222232 1236
Q ss_pred EEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHH
Q 012000 341 IVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLL 378 (473)
Q Consensus 341 ~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il 378 (473)
.+|++||.+. .+++++++||. .+.++.|+.+++.+|+
T Consensus 153 ~~i~~~~~~~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 153 HCVGATTLDEYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp CEEEEECHHHHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred EEEEeCCHHHHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 7888888876 78999999998 5899999999998775
No 68
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.64 E-value=6.3e-16 Score=171.25 Aligned_cols=183 Identities=21% Similarity=0.276 Sum_probs=130.3
Q ss_pred ccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------C
Q 012000 205 AIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------Q 274 (473)
Q Consensus 205 ~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~ 274 (473)
.+.++.++..|++|+|.++.++.|.+.+.. ....++||+||||||||++|+++|+.+ +
T Consensus 169 ~l~~~~~~~~ld~iiG~~~~i~~l~~~l~~------------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~ 236 (758)
T 3pxi_A 169 DLTAIAKEDSLDPVIGRSKEIQRVIEVLSR------------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRD 236 (758)
T ss_dssp BHHHHTTSSCSCCCCCCHHHHHHHHHHHHC------------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSS
T ss_pred HHHHHHhhCCCCCccCchHHHHHHHHHHhC------------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcC
Confidence 444556778999999999999999888742 234689999999999999999999997 7
Q ss_pred CcEEEEecCccchhhhhhhhhhh-----------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEE
Q 012000 275 ATFFNVSASSLTSKWVGEGEKLV-----------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVM 343 (473)
Q Consensus 275 ~~~~~v~~~~l~~~~~g~~~~~~-----------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI 343 (473)
.+++.+++ ..+|.|+.+..+ +.+++|| + .....+.|+..++ ...+.+|
T Consensus 237 ~~~~~~~~---g~~~~G~~e~~l~~~~~~~~~~~~~iLfiD--------~----~~~~~~~L~~~l~------~~~v~~I 295 (758)
T 3pxi_A 237 KRVMTLDM---GTKYRGEFEDRLKKVMDEIRQAGNIILFID--------A----AIDASNILKPSLA------RGELQCI 295 (758)
T ss_dssp CCEECC-------------CTTHHHHHHHHHTCCCCEEEEC--------C------------CCCTT------SSSCEEE
T ss_pred CeEEEecc---cccccchHHHHHHHHHHHHHhcCCEEEEEc--------C----chhHHHHHHHHHh------cCCEEEE
Confidence 88888776 333444433332 4577788 0 1112233333332 3458899
Q ss_pred eecCCCC-----CCCHHHhcccccccccCCCcHHHHHHHHHHHhcc----CCCCCChhhHHHHHHHcC-----CCCHHHH
Q 012000 344 GATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG----QAFSLPGGDLERLVRETE-----GYSGSDL 409 (473)
Q Consensus 344 ~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~----~~~~l~~~~l~~La~~t~-----g~s~~dL 409 (473)
++||... .+|++++|||. .|.|+.|+.+++..||+.++.. .++.+++..+..++..+. ++.+...
T Consensus 296 ~at~~~~~~~~~~~d~al~rRf~-~i~v~~p~~~~~~~il~~~~~~~~~~~~~~i~~~al~~~~~~s~~~i~~~~~p~~a 374 (758)
T 3pxi_A 296 GATTLDEYRKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHRVSITDDAIEAAVKLSDRYISDRFLPDKA 374 (758)
T ss_dssp EECCTTTTHHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSSCSCCHHHHHHHHHHHHHSSCCSCTTHHH
T ss_pred eCCChHHHHHHhhccHHHHhhCc-EEEeCCCCHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcccccCcCCcHH
Confidence 9999988 79999999995 4999999999999999987766 677788998888887654 4566777
Q ss_pred HHHHHHHHHHhH
Q 012000 410 QALCEEAAMMPI 421 (473)
Q Consensus 410 ~~l~~~A~~~a~ 421 (473)
..++..|+..+.
T Consensus 375 i~ll~~a~~~~~ 386 (758)
T 3pxi_A 375 IDLIDEAGSKVR 386 (758)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 788888766543
No 69
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.62 E-value=6.9e-15 Score=148.65 Aligned_cols=213 Identities=15% Similarity=0.150 Sum_probs=146.6
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc------CCcEEEEecCccc
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------QATFFNVSASSLT 286 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~------~~~~~~v~~~~l~ 286 (473)
...++++|.+...+.|.+++...+. ...+..++|+||||||||+|++++++.+ +..++.+++....
T Consensus 17 ~~p~~~~gr~~e~~~l~~~l~~~~~--------~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~ 88 (386)
T 2qby_A 17 YIPDELPHREDQIRKIASILAPLYR--------EEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQID 88 (386)
T ss_dssp CCCSCCTTCHHHHHHHHHSSGGGGG--------TCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHC
T ss_pred cCCCCCCChHHHHHHHHHHHHHHHc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCC
Confidence 4458899999999999887742211 2335689999999999999999999988 8889988865321
Q ss_pred h------hh--------------hhh----hhh-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCC
Q 012000 287 S------KW--------------VGE----GEK-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPN 337 (473)
Q Consensus 287 ~------~~--------------~g~----~~~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~ 337 (473)
. .. ... ... ..+.++.|||++....... ......++..++.. ..
T Consensus 89 ~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~----~~~l~~l~~~~~~~---~~ 161 (386)
T 2qby_A 89 TPYRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN----DDILYKLSRINSEV---NK 161 (386)
T ss_dssp SHHHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC----STHHHHHHHHHHSC---CC
T ss_pred CHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc----CHHHHHHhhchhhc---CC
Confidence 1 00 000 000 1145788999965442211 12445555555543 23
Q ss_pred CcEEEEeecCCC---CCCCHHHhcccc-cccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC---CCCHHH
Q 012000 338 DLVIVMGATNKP---QELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE---GYSGSD 408 (473)
Q Consensus 338 ~~v~vI~tTn~~---~~Ld~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~---g~s~~d 408 (473)
.++.+|++|+.+ ..+++.+.+||. ..+.+++++.++...++...+.. ....+++..+..++..+. | .++.
T Consensus 162 ~~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G-~~r~ 240 (386)
T 2qby_A 162 SKISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHG-DARR 240 (386)
T ss_dssp --EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTC-CHHH
T ss_pred CeEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcC-CHHH
Confidence 458888899877 467889999986 47999999999999999987653 234567888999998887 7 5667
Q ss_pred HHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 409 LQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 409 L~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
+.++|+.|+..+..+ ....|+.+|+..++..+.
T Consensus 241 ~~~ll~~a~~~a~~~-----------~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 241 ALDLLRVSGEIAERM-----------KDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp HHHHHHHHHHHHHHT-----------TCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc-----------CCCccCHHHHHHHHHHHh
Confidence 777888887666432 123577777777766543
No 70
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.61 E-value=9.1e-15 Score=141.24 Aligned_cols=190 Identities=16% Similarity=0.151 Sum_probs=120.7
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCccchhh
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSKW 289 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l~~~~ 289 (473)
.+|++++|.+...+.+.+.+.... ....++||+||||||||++|++++..+. .+|+.++++.+....
T Consensus 3 ~~f~~~ig~~~~~~~~~~~~~~~~----------~~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~ 72 (265)
T 2bjv_A 3 EYKDNLLGEANSFLEVLEQVSHLA----------PLDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL 72 (265)
T ss_dssp -------CCCHHHHHHHHHHHHHT----------TSCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH
T ss_pred cccccceeCCHHHHHHHHHHHHHh----------CCCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH
Confidence 479999999999988887775321 1246799999999999999999999875 689999988764321
Q ss_pred -----hhh---------------hhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-------CCCCCcEEE
Q 012000 290 -----VGE---------------GEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-------SNPNDLVIV 342 (473)
Q Consensus 290 -----~g~---------------~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-------~~~~~~v~v 342 (473)
+|. .+..-..+++|||++... ......|+..++... ......+.|
T Consensus 73 ~~~~l~g~~~~~~~g~~~~~~~~l~~a~~~~l~lDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~~i 144 (265)
T 2bjv_A 73 LDSELFGHEAGAFTGAQKRHPGRFERADGGTLFLDELATAP--------MMVQEKLLRVIEYGELERVGGSQPLQVNVRL 144 (265)
T ss_dssp HHHHHHCCC---------CCCCHHHHTTTSEEEEESGGGSC--------HHHHHHHHHHHHHCEECCCCC--CEECCCEE
T ss_pred HHHHhcCCcccccccccccccchhhhcCCcEEEEechHhcC--------HHHHHHHHHHHHhCCeecCCCcccccCCeEE
Confidence 111 111224688899995443 234455665555221 011234788
Q ss_pred EeecCCC-------CCCCHHHhccccc-ccccCCCcH--HHHHHHHHHHhc----cCCC----CCChhhHHHHHHHcCCC
Q 012000 343 MGATNKP-------QELDDAVLRRLVK-RIYVPLPDE--NVRRLLLKHKLK----GQAF----SLPGGDLERLVRETEGY 404 (473)
Q Consensus 343 I~tTn~~-------~~Ld~al~rRf~~-~i~~~~P~~--~~r~~il~~~l~----~~~~----~l~~~~l~~La~~t~g~ 404 (473)
|+|||.+ ..+++++.+||.. .+.+|.... ++...++++++. ..+. .++++.+..|.......
T Consensus 145 I~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~~~~~~~~~~~a~~~L~~~~~~g 224 (265)
T 2bjv_A 145 VCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIKLPLFPGFTERARETLLNYRWPG 224 (265)
T ss_dssp EEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCSSCCCBCHHHHHHHHHSCCTT
T ss_pred EEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhCCCcccCcCHHHHHHHHhCCCCC
Confidence 9999875 2478999999963 455555443 344455554443 2333 56788888888765444
Q ss_pred CHHHHHHHHHHHHHHh
Q 012000 405 SGSDLQALCEEAAMMP 420 (473)
Q Consensus 405 s~~dL~~l~~~A~~~a 420 (473)
..++|.++++.++..+
T Consensus 225 n~reL~~~l~~~~~~~ 240 (265)
T 2bjv_A 225 NIRELKNVVERSVYRH 240 (265)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC
Confidence 7889999999887553
No 71
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.61 E-value=7.7e-16 Score=172.59 Aligned_cols=200 Identities=19% Similarity=0.252 Sum_probs=132.7
Q ss_pred hhccccCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---------
Q 012000 203 NTAIVDRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES--------- 273 (473)
Q Consensus 203 ~~~iv~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~--------- 273 (473)
...+.++.++.+|++++|.++..+.+.+.+.. ....++||+||||||||++|+++|..+
T Consensus 157 ~~~l~~~~r~~~ld~viGr~~~i~~l~~~l~~------------~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l 224 (854)
T 1qvr_A 157 GIDLTRLAAEGKLDPVIGRDEEIRRVIQILLR------------RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGL 224 (854)
T ss_dssp EEEHHHHHHTTCSCCCCSCHHHHHHHHHHHHC------------SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTS
T ss_pred HHhHHHHHhcCCCcccCCcHHHHHHHHHHHhc------------CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhh
Confidence 33455556788999999999999888887631 234679999999999999999999987
Q ss_pred -CCcEEEEecCccc--hhhhhhhhhhh------------cceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 274 -QATFFNVSASSLT--SKWVGEGEKLV------------RTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 274 -~~~~~~v~~~~l~--~~~~g~~~~~~------------~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
+.+++.++++.+. ..+.|+.+..+ +.+++|||++...............+.+...+. ..
T Consensus 225 ~~~~~~~l~~~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g~~~~~~~L~~~l~------~~ 298 (854)
T 1qvr_A 225 KGKRIVSLQMGSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEGAVDAGNMLKPALA------RG 298 (854)
T ss_dssp TTCEEEEECC-----------CHHHHHHHHHHHHHTTCSSEEEEECCC-------------------HHHHH------TT
T ss_pred cCCeEEEeehHHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccchHHHHHHHHHHHh------CC
Confidence 8899999988775 34444333222 348889999876533322222223333444443 23
Q ss_pred cEEEEeecCCCC----CCCHHHhcccccccccCCCcHHHHHHHHHHHhc----cCCCCCChhhHHHHHHHcC-----CCC
Q 012000 339 LVIVMGATNKPQ----ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLK----GQAFSLPGGDLERLVRETE-----GYS 405 (473)
Q Consensus 339 ~v~vI~tTn~~~----~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~----~~~~~l~~~~l~~La~~t~-----g~s 405 (473)
.+.+|++||.++ .+++++++||.. +.++.|+.+++..|++.++. .+++.+++..+..++..+. +|.
T Consensus 299 ~i~~I~at~~~~~~~~~~d~aL~rRf~~-i~l~~p~~~e~~~iL~~~~~~~~~~~~~~i~~~al~~~~~ls~r~i~~~~l 377 (854)
T 1qvr_A 299 ELRLIGATTLDEYREIEKDPALERRFQP-VYVDEPTVEETISILRGLKEKYEVHHGVRISDSAIIAAATLSHRYITERRL 377 (854)
T ss_dssp CCCEEEEECHHHHHHHTTCTTTCSCCCC-EEECCCCHHHHHHHHHHHHHHHHHHTTCEECHHHHHHHHHHHHHHCCSSCT
T ss_pred CeEEEEecCchHHhhhccCHHHHhCCce-EEeCCCCHHHHHHHHHhhhhhhhhhcCCCCCHHHHHHHHHHHhhhcccccC
Confidence 367888888764 579999999986 99999999999999987665 3467778888888888654 456
Q ss_pred HHHHHHHHHHHHHHhH
Q 012000 406 GSDLQALCEEAAMMPI 421 (473)
Q Consensus 406 ~~dL~~l~~~A~~~a~ 421 (473)
+.....++.+|+....
T Consensus 378 p~kai~lldea~a~~~ 393 (854)
T 1qvr_A 378 PDKAIDLIDEAAARLR 393 (854)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHH
Confidence 7777788887765543
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.59 E-value=9.3e-15 Score=163.79 Aligned_cols=198 Identities=19% Similarity=0.263 Sum_probs=146.0
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh---
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--- 288 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~--- 288 (473)
+++|+|++.+++.|...+..... .......|..++||+||||||||++|++++..+ +.+|+.++++.+...
T Consensus 557 ~~~viG~~~a~~~l~~~i~~~~~---g~~~~~~p~~~vLl~Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~ 633 (854)
T 1qvr_A 557 HKRVVGQDEAIRAVADAIRRARA---GLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAV 633 (854)
T ss_dssp HHHSCSCHHHHHHHHHHHHHHGG---GCSCSSSCSEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGG
T ss_pred hcccCCcHHHHHHHHHHHHHHhc---ccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHH
Confidence 57899999999999988853211 011122344689999999999999999999998 789999999876442
Q ss_pred ---------hhhhhh---------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCC-------CCcEEEE
Q 012000 289 ---------WVGEGE---------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNP-------NDLVIVM 343 (473)
Q Consensus 289 ---------~~g~~~---------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~-------~~~v~vI 343 (473)
|+|..+ ..-..+++|||++ .....+.+.|+..|+.-.... -.+++||
T Consensus 634 s~l~g~~~~~~G~~~~g~l~~~~~~~~~~vl~lDEi~--------~l~~~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI 705 (854)
T 1qvr_A 634 SRLIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDEIE--------KAHPDVFNILLQILDDGRLTDSHGRTVDFRNTVII 705 (854)
T ss_dssp GGC--------------CHHHHHHHCSSEEEEESSGG--------GSCHHHHHHHHHHHTTTEECCSSSCCEECTTEEEE
T ss_pred HHHcCCCCCCcCccccchHHHHHHhCCCeEEEEeccc--------ccCHHHHHHHHHHhccCceECCCCCEeccCCeEEE
Confidence 122211 1123688899994 334567888888887432110 1357899
Q ss_pred eecCC--------------------------CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhcc---------CCCC
Q 012000 344 GATNK--------------------------PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKG---------QAFS 388 (473)
Q Consensus 344 ~tTn~--------------------------~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~---------~~~~ 388 (473)
+|||. ...+.++|+.||+.++.+++|+.+++..|+..++.. ..+.
T Consensus 706 ~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~~~~~~~~ 785 (854)
T 1qvr_A 706 LTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLAEKRISLE 785 (854)
T ss_dssp EECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSCHHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHHTTTCEEE
T ss_pred EecCcChHHHhhhcccccchHHHHHHHHHHHHhhCCHHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHHhCCceEE
Confidence 99997 235688999999988888899999999999988762 2345
Q ss_pred CChhhHHHHHHHcC--CCCHHHHHHHHHHHHHHhHHH
Q 012000 389 LPGGDLERLVRETE--GYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 389 l~~~~l~~La~~t~--g~s~~dL~~l~~~A~~~a~~~ 423 (473)
++++.+..|+.... .+..++|.++++.++..++.+
T Consensus 786 ~~~~a~~~L~~~~~~~~gn~R~L~~~i~~~~~~~~~~ 822 (854)
T 1qvr_A 786 LTEAAKDFLAERGYDPVFGARPLRRVIQRELETPLAQ 822 (854)
T ss_dssp ECHHHHHHHHHHHCBTTTBTSTHHHHHHHHTHHHHHH
T ss_pred ECHHHHHHHHHcCCCCCCChHHHHHHHHHHHHHHHHH
Confidence 78999999999876 678999999999998877655
No 73
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.57 E-value=5e-14 Score=147.86 Aligned_cols=186 Identities=15% Similarity=0.180 Sum_probs=123.9
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC--CcEEEEecC-----ccchh
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSAS-----SLTSK 288 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~v~~~-----~l~~~ 288 (473)
..|+|.+++++.+...+.. ..++||+||||||||+||+++|..++ .+|..+.+. ++...
T Consensus 22 ~~ivGq~~~i~~l~~al~~--------------~~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~ 87 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS--------------GESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGP 87 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH--------------TCEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCC
T ss_pred hhhHHHHHHHHHHHHHHhc--------------CCeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCc
Confidence 3589999999888766531 25899999999999999999999884 345444442 22221
Q ss_pred hhh-------hhhhh------hcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-------CCCCCCcEEEEeecCC
Q 012000 289 WVG-------EGEKL------VRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-------TSNPNDLVIVMGATNK 348 (473)
Q Consensus 289 ~~g-------~~~~~------~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-------~~~~~~~v~vI~tTn~ 348 (473)
+.+ ..... ...+++||||. .......+.|+..|+.. ....+.+ ++|+|||.
T Consensus 88 ~~~~~~~~~g~~~~~~~g~l~~~~IL~IDEI~--------r~~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~ 158 (500)
T 3nbx_X 88 LSIQALKDEGRYERLTSGYLPEAEIVFLDEIW--------KAGPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNE 158 (500)
T ss_dssp BC----------CBCCTTSGGGCSEEEEESGG--------GCCHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESS
T ss_pred ccHHHHhhchhHHhhhccCCCcceeeeHHhHh--------hhcHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhcccc
Confidence 111 01101 23468899994 33455667777777521 1112233 45677775
Q ss_pred CCC---CCHHHhcccccccccCCCcH-HHHHHHHHHHhccC-----------------------CCCCChhhHHHHHHHc
Q 012000 349 PQE---LDDAVLRRLVKRIYVPLPDE-NVRRLLLKHKLKGQ-----------------------AFSLPGGDLERLVRET 401 (473)
Q Consensus 349 ~~~---Ld~al~rRf~~~i~~~~P~~-~~r~~il~~~l~~~-----------------------~~~l~~~~l~~La~~t 401 (473)
+.. +.+++++||...+.++.|+. +++..|+....... .+.+++..++.++...
T Consensus 159 lpe~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~ 238 (500)
T 3nbx_X 159 LPEADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNPVPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLR 238 (500)
T ss_dssp CCCTTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCCSCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCCCCccceecHHHHHHHHhcCCcccCchHHHHHHHHHH
Confidence 433 45799999998899999987 77888887654311 3456677777777655
Q ss_pred ---------CCCCHHHHHHHHHHHHHHhHHHh
Q 012000 402 ---------EGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 402 ---------~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
.|.|++.+..+++.|...|..+.
T Consensus 239 ~~lr~~r~~~~iS~R~~~~llr~A~A~A~l~g 270 (500)
T 3nbx_X 239 QQLDKLPDAPYVSDRRWKKAIRLLQASAFFSG 270 (500)
T ss_dssp HHHHHCSSSCCCCHHHHHHHHHHHHHHHHHTT
T ss_pred HHhhcCCCCCccchhHHHHHHHHHHHHHhhcC
Confidence 47899999999988877665543
No 74
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.57 E-value=1.5e-15 Score=163.17 Aligned_cols=215 Identities=19% Similarity=0.169 Sum_probs=138.0
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhh-cCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE----ecCccchhhh
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFT-GLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNV----SASSLTSKWV 290 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~-~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v----~~~~l~~~~~ 290 (473)
..|+|++++|+.|...+.. ..+.... .......++||+||||||||+||+++|+.++..++.. ++..+.....
T Consensus 295 ~~I~G~e~vk~al~~~l~~--g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~~ 372 (595)
T 3f9v_A 295 PSIYGHWELKEALALALFG--GVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAVV 372 (595)
T ss_dssp STTSCCHHHHHHHTTTTTC--CCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEECS
T ss_pred chhcChHHHHHHHHHHHhC--CCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCccccccccceee
Confidence 4689999998887543321 1000000 1112234899999999999999999999987666543 2222222111
Q ss_pred h------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC---------CCCCCcEEEEeecCCC
Q 012000 291 G------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT---------SNPNDLVIVMGATNKP 349 (473)
Q Consensus 291 g------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~---------~~~~~~v~vI~tTn~~ 349 (473)
. .....-+.+++|||++... ......|+..|+.-. ...+.++.||+|||++
T Consensus 373 ~~~~~g~~~~~~G~l~~A~~gil~IDEid~l~--------~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vIaatNp~ 444 (595)
T 3f9v_A 373 REKGTGEYYLEAGALVLADGGIAVIDEIDKMR--------DEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVIAAGNPK 444 (595)
T ss_dssp SGGGTSSCSEEECHHHHHSSSEECCTTTTCCC--------SHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEEEEECCT
T ss_pred eccccccccccCCeeEecCCCcEEeehhhhCC--------HhHhhhhHHHHhCCEEEEecCCcEEEecCceEEEEEcCCc
Confidence 1 1111224788899996543 234555666665321 1123458899999998
Q ss_pred C-------------CCCHHHhcccc-cccccCCCcHHHHHHHHHHHhccCCC-------------------------CCC
Q 012000 350 Q-------------ELDDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQAF-------------------------SLP 390 (473)
Q Consensus 350 ~-------------~Ld~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~~~~-------------------------~l~ 390 (473)
+ .|++++++||+ ..+..+.|+.+ ...|.++.+..+.. .++
T Consensus 445 ~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~~~p~ls 523 (595)
T 3f9v_A 445 FGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKYVTPKIT 523 (595)
T ss_dssp TCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHHHCCCCC
T ss_pred CCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHhCCCCCC
Confidence 7 89999999997 55677888888 88888877754321 334
Q ss_pred hhhHHHHHHH--------------cCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhC
Q 012000 391 GGDLERLVRE--------------TEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIR 452 (473)
Q Consensus 391 ~~~l~~La~~--------------t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ 452 (473)
++..+.|... ..+.|.+.+..+++.|...|..+. ...|+.+|+..|++-++
T Consensus 524 ~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~-----------~~~V~~~dv~~Ai~l~~ 588 (595)
T 3f9v_A 524 SEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMAL-----------KAEVTREDAERAINIMR 588 (595)
T ss_dssp CCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTS-----------SCCSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhC-----------cCCCCHHHHHHHHHHHH
Confidence 4455555554 346788888888888876664332 24589999999987654
No 75
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=99.54 E-value=7.4e-15 Score=115.65 Aligned_cols=70 Identities=21% Similarity=0.279 Sum_probs=66.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHH
Q 012000 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQ 120 (473)
Q Consensus 51 k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~ 120 (473)
.+++++|++++++||+.|+.|+|++|+.+|++|+++|+.++++++++..++.++.|+.+|++|||+++..
T Consensus 13 ~~~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~alk~e~d~~~k~~ir~K~~eY~~RAE~LK~~ 82 (83)
T 2w2u_A 13 VMLEEMARKYAINAVKADKEGNAEEAITNYKKAIEVLAQLVSLYRDGSTAAIYEQMINEYKRRIEVLKEL 82 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSTTSSTHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3588999999999999999999999999999999999999999999999999999999999999999864
No 76
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.54 E-value=5.8e-14 Score=138.73 Aligned_cols=187 Identities=17% Similarity=0.200 Sum_probs=124.9
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhh---
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKW--- 289 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~--- 289 (473)
++++|.....+.+.+.+... .....++||+||||||||++|++++... +.+|+.++|+.+....
T Consensus 2 ~~iig~s~~~~~~~~~~~~~----------a~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~ 71 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMV----------APSDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLES 71 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHH----------CSTTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHH
T ss_pred CCcEECCHHHHHHHHHHHHH----------hCCCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHH
Confidence 46899999888888877532 1234689999999999999999999965 6789999988764322
Q ss_pred --hh---------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-------CCCCcEEEEee
Q 012000 290 --VG---------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-------NPNDLVIVMGA 345 (473)
Q Consensus 290 --~g---------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~-------~~~~~v~vI~t 345 (473)
+| ..+..-..+++|||++... ......|+..++.... .....+.||+|
T Consensus 72 ~lfg~~~g~~tg~~~~~~g~~~~a~~g~L~LDEi~~l~--------~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~a 143 (304)
T 1ojl_A 72 ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDIS--------PLMQVRLLRAIQEREVQRVGSNQTISVDVRLIAA 143 (304)
T ss_dssp HHTCCCSSCCC---CCCCCHHHHHTTSEEEEESCTTCC--------HHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEEE
T ss_pred HhcCccccccCchhhhhcCHHHhcCCCEEEEeccccCC--------HHHHHHHHHHHhcCEeeecCCcccccCCeEEEEe
Confidence 11 1112224578899995443 2345566666654321 11234789999
Q ss_pred cCCC-------CCCCHHHhccccc-ccccCCCc--HHHHHHHHHHHhcc-------CCCCCChhhHHHHHHHcCCCCHHH
Q 012000 346 TNKP-------QELDDAVLRRLVK-RIYVPLPD--ENVRRLLLKHKLKG-------QAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 346 Tn~~-------~~Ld~al~rRf~~-~i~~~~P~--~~~r~~il~~~l~~-------~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
||.+ ..+++.+..||.. .|.+|+.. .++...++.+++.. ....++++.+..|......-+.++
T Consensus 144 tn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~~~~~~s~~a~~~L~~~~wpGnvRe 223 (304)
T 1ojl_A 144 THRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRKVVKGFTPQAMDLLIHYDWPGNIRE 223 (304)
T ss_dssp ESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHHCCCSSHHHH
T ss_pred cCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhccCccCCCHHHHHHHHcCCCCCCHHH
Confidence 9975 2467788888862 24454444 33444566655432 234568889999998874447899
Q ss_pred HHHHHHHHHHHh
Q 012000 409 LQALCEEAAMMP 420 (473)
Q Consensus 409 L~~l~~~A~~~a 420 (473)
|.++++.|+..+
T Consensus 224 L~~~l~~~~~~~ 235 (304)
T 1ojl_A 224 LENAIERAVVLL 235 (304)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHhC
Confidence 999999987654
No 77
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.54 E-value=3e-15 Score=135.39 Aligned_cols=143 Identities=22% Similarity=0.313 Sum_probs=97.4
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------CCcEE
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFF 278 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~ 278 (473)
++++..|++++|.+...+.+.+.+.. ....++||+||||||||++|+++++++ +.+++
T Consensus 15 ~~~~~~~~~~~g~~~~~~~l~~~l~~------------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~ 82 (187)
T 2p65_A 15 LARAGKLDPVIGRDTEIRRAIQILSR------------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLV 82 (187)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHTS------------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEE
T ss_pred HHhccccchhhcchHHHHHHHHHHhC------------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEE
Confidence 34567899999999999988887742 224689999999999999999999987 77888
Q ss_pred EEecCccchh--hhhhhhh-----------h-hcceeeeeccccccccCc-chHHHHHHHHHHHHhcCcCCCCCCcEEEE
Q 012000 279 NVSASSLTSK--WVGEGEK-----------L-VRTLFMIDSIMSTRMANE-NDASRRLKSEFLIQFDGVTSNPNDLVIVM 343 (473)
Q Consensus 279 ~v~~~~l~~~--~~g~~~~-----------~-~~~if~IDei~~~~~~~~-~~~~~~~~~~ll~~ldg~~~~~~~~v~vI 343 (473)
.+++..+... +.+.... . -+.+++|||++....... ......+.+.+...++ ...+++|
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~~------~~~~~ii 156 (187)
T 2p65_A 83 SLDLSSLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPMLA------RGELRCI 156 (187)
T ss_dssp EECHHHHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHHH------TTCSCEE
T ss_pred EEeHHHhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHHh------cCCeeEE
Confidence 8877655321 1121111 1 135888999987652211 1111112233333333 1337788
Q ss_pred eecCCCC-----CCCHHHhcccccccccCCCc
Q 012000 344 GATNKPQ-----ELDDAVLRRLVKRIYVPLPD 370 (473)
Q Consensus 344 ~tTn~~~-----~Ld~al~rRf~~~i~~~~P~ 370 (473)
++||.+. .+++++++||.. +.++.|+
T Consensus 157 ~~~~~~~~~~~~~~~~~l~~R~~~-i~i~~p~ 187 (187)
T 2p65_A 157 GATTVSEYRQFIEKDKALERRFQQ-ILVEQPS 187 (187)
T ss_dssp EEECHHHHHHHTTTCHHHHHHEEE-EECCSCC
T ss_pred EecCHHHHHHHHhccHHHHHhcCc-ccCCCCC
Confidence 8888765 689999999996 8999885
No 78
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=99.52 E-value=9.8e-15 Score=115.26 Aligned_cols=69 Identities=26% Similarity=0.338 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQV 121 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i 121 (473)
++++|++++++||+.|+.|+|++|+.+|++||++|+.++++++++..++.++.|+.+|++|||+++..+
T Consensus 7 ~~~~Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~l~~~lk~e~d~~~k~~ir~K~~eY~~RAE~Lk~~l 75 (83)
T 2v6y_A 7 LEDMARKYAILAVKADKEGKVEDAITYYKKAIEVLSQIIVLYPESVARTAYEQMINEYKKRISYLEKVL 75 (83)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 688999999999999999999999999999999999999999999999999999999999999998774
No 79
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.50 E-value=2.4e-13 Score=134.53 Aligned_cols=187 Identities=11% Similarity=0.109 Sum_probs=126.1
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----------CCcEEEEecCccch
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----------QATFFNVSASSLTS 287 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----------~~~~~~v~~~~l~~ 287 (473)
+.|.++..+.|...+.-.+. ...+.+++||||||||||++++++++++ ...++.++|..+.+
T Consensus 22 L~~Re~E~~~i~~~L~~~i~--------~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t 93 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDSLM--------SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAG 93 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHH--------TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC-
T ss_pred cCCHHHHHHHHHHHHHHHhc--------CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCC
Confidence 66777777777777643221 2346799999999999999999999998 35788899765432
Q ss_pred h----------hhh------hh-------------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCC
Q 012000 288 K----------WVG------EG-------------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPND 338 (473)
Q Consensus 288 ~----------~~g------~~-------------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~ 338 (473)
. ..| .. ......++.|||++... . ..++..|+.... ....
T Consensus 94 ~~~~~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~---~----q~~L~~l~~~~~----~~~s 162 (318)
T 3te6_A 94 MDALYEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL---S----EKILQYFEKWIS----SKNS 162 (318)
T ss_dssp -HHHHHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC---C----THHHHHHHHHHH----CSSC
T ss_pred HHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh---c----chHHHHHHhccc----ccCC
Confidence 1 101 01 01123577899997766 1 123334444322 2345
Q ss_pred cEEEEeecCCCCCC----CHHHhcccc-cccccCCCcHHHHHHHHHHHhccCC---------------------------
Q 012000 339 LVIVMGATNKPQEL----DDAVLRRLV-KRIYVPLPDENVRRLLLKHKLKGQA--------------------------- 386 (473)
Q Consensus 339 ~v~vI~tTn~~~~L----d~al~rRf~-~~i~~~~P~~~~r~~il~~~l~~~~--------------------------- 386 (473)
+++||+++|..+.. ++++++||. .+|.|++++.++...|++..+....
T Consensus 163 ~~~vI~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 242 (318)
T 3te6_A 163 KLSIICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSLLKPFHVKVNDKKEMTIYNNIREGQNQKI 242 (318)
T ss_dssp CEEEEEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHHCCCEEEEECTTCCEEECCCC--------
T ss_pred cEEEEEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhhhccccccccccccccccccccccccccc
Confidence 68999999987643 445567886 6799999999999999998876521
Q ss_pred --------CCCChhhHHHHHHH---cCCCCHHHHHHHHHHHHHHhHHHh
Q 012000 387 --------FSLPGGDLERLVRE---TEGYSGSDLQALCEEAAMMPIREL 424 (473)
Q Consensus 387 --------~~l~~~~l~~La~~---t~g~s~~dL~~l~~~A~~~a~~~~ 424 (473)
..+++..++.+|+. ..|. .+-.-++|+.|+..+-++.
T Consensus 243 ~~~~~~~~~~i~~~ai~~~A~~vA~~~GD-~R~Al~ilr~A~~~ae~e~ 290 (318)
T 3te6_A 243 PDNVIVINHKINNKITQLIAKNVANVSGS-TEKAFKICEAAVEISKKDF 290 (318)
T ss_dssp CTTEEEECEECCHHHHHHHHHHHHHHHCS-HHHHHHHHHHHHHHHHHHH
T ss_pred cccccccccccCHHHHHHHHHHHHhhCCh-HHHHHHHHHHHHHHHHHHH
Confidence 12577888888884 5674 4444467888888776554
No 80
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.49 E-value=4.5e-13 Score=134.04 Aligned_cols=164 Identities=18% Similarity=0.197 Sum_probs=115.1
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCC------------------------c
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQA------------------------T 276 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~------------------------~ 276 (473)
++++.+.|...+. ....++++||+||||+|||++|+++|+.+.. .
T Consensus 7 ~~~~~~~l~~~i~-----------~~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d 75 (334)
T 1a5t_A 7 LRPDFEKLVASYQ-----------AGRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPD 75 (334)
T ss_dssp GHHHHHHHHHHHH-----------TTCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTT
T ss_pred hHHHHHHHHHHHH-----------cCCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCC
Confidence 4566667766653 2344678999999999999999999998753 3
Q ss_pred EEEEecC----ccchhhhhhh--------hhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEe
Q 012000 277 FFNVSAS----SLTSKWVGEG--------EKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMG 344 (473)
Q Consensus 277 ~~~v~~~----~l~~~~~g~~--------~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~ 344 (473)
++.+++. ......+.+. ...-+.++.||+++... ....+.|+..++ .++.++++|.
T Consensus 76 ~~~~~~~~~~~~~~i~~ir~l~~~~~~~~~~~~~kvviIdead~l~--------~~a~naLLk~lE----ep~~~~~~Il 143 (334)
T 1a5t_A 76 YYTLAPEKGKNTLGVDAVREVTEKLNEHARLGGAKVVWVTDAALLT--------DAAANALLKTLE----EPPAETWFFL 143 (334)
T ss_dssp EEEECCCTTCSSBCHHHHHHHHHHTTSCCTTSSCEEEEESCGGGBC--------HHHHHHHHHHHT----SCCTTEEEEE
T ss_pred EEEEeccccCCCCCHHHHHHHHHHHhhccccCCcEEEEECchhhcC--------HHHHHHHHHHhc----CCCCCeEEEE
Confidence 4555542 1110001010 01124678899995543 334567888887 3455688888
Q ss_pred ecCCCCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 345 ATNKPQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 345 tTn~~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
+||.++.+.+++++||. .+.|+.|+.++...++...+ .++++.+..++..+.| +.+.+.++++
T Consensus 144 ~t~~~~~l~~ti~SRc~-~~~~~~~~~~~~~~~L~~~~-----~~~~~~~~~l~~~s~G-~~r~a~~~l~ 206 (334)
T 1a5t_A 144 ATREPERLLATLRSRCR-LHYLAPPPEQYAVTWLSREV-----TMSQDALLAALRLSAG-SPGAALALFQ 206 (334)
T ss_dssp EESCGGGSCHHHHTTSE-EEECCCCCHHHHHHHHHHHC-----CCCHHHHHHHHHHTTT-CHHHHHHTTS
T ss_pred EeCChHhCcHHHhhcce-eeeCCCCCHHHHHHHHHHhc-----CCCHHHHHHHHHHcCC-CHHHHHHHhc
Confidence 99999999999999996 48999999999999888775 4578888999999988 4555444443
No 81
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.48 E-value=5.6e-13 Score=109.43 Aligned_cols=88 Identities=19% Similarity=0.194 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCC-CCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 46 TAYKLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVP-SYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 46 ~~~~~k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~-~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
....+|.+|++|+++|.+|+++||.|+.++|+.+|++||++|.+++.++.+ +......|++++.+++||.+++.++++|
T Consensus 11 ~l~~ik~~h~~AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~~~~~~g~~we~Ar~lq~KM~~nL~~v~~R 90 (116)
T 2dl1_A 11 EIKIIREAYKKAFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSKESEHTGPGWESARQMQQKMKETLQNVRTR 90 (116)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCCCTTCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 455699999999999999999999999999999999999999999999854 4588999999999999999999999999
Q ss_pred HHHHhhhhC
Q 012000 125 LQALNRRAG 133 (473)
Q Consensus 125 l~~l~~~~~ 133 (473)
+..|.....
T Consensus 91 L~~Le~~~~ 99 (116)
T 2dl1_A 91 LEILEKGLA 99 (116)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHhcCC
Confidence 999998653
No 82
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=99.48 E-value=6.1e-14 Score=113.15 Aligned_cols=74 Identities=12% Similarity=0.138 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 51 KGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 51 k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
+.++++|++++.+||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||+++..++..
T Consensus 9 ~~~l~~Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl~RAE~LK~~l~~~ 82 (93)
T 1wfd_A 9 DSDSTAAVAVLKRAVELDAESRYQQALVCYQEGIDMLLQVLKGTKESSKRCVLRTKISGYMDRAENIKKYLDQE 82 (93)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 46788999999999999999999999999999999999999999999999999999999999999999997644
No 83
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=99.46 E-value=7.8e-14 Score=110.63 Aligned_cols=69 Identities=13% Similarity=0.187 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 012000 55 ELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSD 123 (473)
Q Consensus 55 ~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~ 123 (473)
.+|++++++||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||+++..+..
T Consensus 14 ~~A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~RAE~LK~~l~~ 82 (86)
T 4a5x_A 14 TAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQ 82 (86)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 579999999999999999999999999999999999999999999999999999999999999998653
No 84
>3eab_A Spastin; spastin, MIT, ESCRT, alternative splicing, ATP- binding, cytoplasm, disease mutation, hereditary spastic paraplegia, nucleotide-binding; 2.50A {Homo sapiens}
Probab=99.45 E-value=2.5e-13 Score=106.24 Aligned_cols=81 Identities=25% Similarity=0.293 Sum_probs=76.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhC---CChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHH
Q 012000 47 AYKLKGYFELAKEEIAKAVRAEEW---GLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSD 123 (473)
Q Consensus 47 ~~~~k~~~~~A~~~i~~Av~~D~~---g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~ 123 (473)
..++|++|++|+++|.+|+..||. |+.++|+.+|++||+.|.+++.++.+. ....|++++.+++||.+++.++++
T Consensus 6 ~~~ik~~h~~AF~~Is~aL~~DE~~~~G~k~~A~~~YkkGi~eL~~Gi~V~~~g--~G~~we~Ar~LQ~KM~~nL~~v~~ 83 (89)
T 3eab_A 6 AERVRVFHKQAFEYISIALRIDEDEKAGQKEQAVEWYKKGIEELEKGIAVIVTG--QGEQCERARRLQAKMMTNLVMAKD 83 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSCSSSGGGSHHHHHHHHHHHHHHHHSCCCC--CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCHHHHHHHHHHHHHHHHhhcCCccCC--CChhHHHHHHHHHHHHHHHHHHHH
Confidence 568999999999999999999999 999999999999999999999988764 788899999999999999999999
Q ss_pred HHHHHh
Q 012000 124 RLQALN 129 (473)
Q Consensus 124 rl~~l~ 129 (473)
|+..|+
T Consensus 84 RL~~Le 89 (89)
T 3eab_A 84 RLQLLE 89 (89)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 999874
No 85
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.43 E-value=7.3e-13 Score=142.92 Aligned_cols=222 Identities=20% Similarity=0.273 Sum_probs=138.8
Q ss_pred cCCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcE---EEEecCc
Q 012000 208 DRSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATF---FNVSASS 284 (473)
Q Consensus 208 ~~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~---~~v~~~~ 284 (473)
.++++..|++++|++.+++.|...+.. ..+++|+||||||||+||++||..+.... +.+.+..
T Consensus 33 ~~~rp~~l~~i~G~~~~l~~l~~~i~~--------------g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~ 98 (604)
T 3k1j_A 33 IEVPEKLIDQVIGQEHAVEVIKTAANQ--------------KRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNP 98 (604)
T ss_dssp SCCCSSHHHHCCSCHHHHHHHHHHHHT--------------TCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCT
T ss_pred ccccccccceEECchhhHhhccccccC--------------CCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCc
Confidence 357889999999999999988877741 25799999999999999999999874321 1111000
Q ss_pred c-------------------------------------------------------------------chhhhh------
Q 012000 285 L-------------------------------------------------------------------TSKWVG------ 291 (473)
Q Consensus 285 l-------------------------------------------------------------------~~~~~g------ 291 (473)
. ....+|
T Consensus 99 ~~~~~p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~ 178 (604)
T 3k1j_A 99 EDENMPRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDP 178 (604)
T ss_dssp TCTTSCEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCC
T ss_pred ccccCCcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEech
Confidence 0 000011
Q ss_pred -----------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----------------CCCC
Q 012000 292 -----------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----------------SNPN 337 (473)
Q Consensus 292 -----------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----------------~~~~ 337 (473)
.....-..+++|||++... ......|+..|+.-. ...+
T Consensus 179 ~~~g~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l~--------~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p 250 (604)
T 3k1j_A 179 FQSGGLGTPAHERVEPGMIHRAHKGVLFIDEIATLS--------LKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVP 250 (604)
T ss_dssp C----CCCCGGGGEECCHHHHTTTSEEEETTGGGSC--------HHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEE
T ss_pred hhcCCccccccccccCceeeecCCCEEEEechhhCC--------HHHHHHHHHHHHcCcEEecccccccccccCCCCccc
Confidence 0111123478899995542 234445555554110 0112
Q ss_pred CcEEEEeecCCC--CCCCHHHhcccc---cccccCC--C-cHHHHHHHHHHHhcc-----CCCCCChhhHHHHHHHc---
Q 012000 338 DLVIVMGATNKP--QELDDAVLRRLV---KRIYVPL--P-DENVRRLLLKHKLKG-----QAFSLPGGDLERLVRET--- 401 (473)
Q Consensus 338 ~~v~vI~tTn~~--~~Ld~al~rRf~---~~i~~~~--P-~~~~r~~il~~~l~~-----~~~~l~~~~l~~La~~t--- 401 (473)
..+.||+|||+. ..++++|++||. ..+.++. + ..+....+++.+... ....++++.+..|++..
T Consensus 251 ~~~~vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ls~eAl~~Li~~~~r~ 330 (604)
T 3k1j_A 251 CDFVLVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDGKIPHFTKEAVEEIVREAQKR 330 (604)
T ss_dssp CCCEEEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHCSSCCBBHHHHHHHHHHHHHT
T ss_pred eeEEEEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhccCcccCCHHHHHHHHHHHhhh
Confidence 357899999986 679999999996 3344433 2 334455555443321 22456888888888754
Q ss_pred CCC------CHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHH
Q 012000 402 EGY------SGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEEL 463 (473)
Q Consensus 402 ~g~------s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~ 463 (473)
.|. +.++|.++++.|...|..+ ....|+.+|+.+|+.. ...+....++.|
T Consensus 331 ~g~r~~l~~~~R~l~~llr~A~~~A~~~-----------~~~~I~~edv~~A~~~-~~~i~~~~~e~~ 386 (604)
T 3k1j_A 331 AGRKGHLTLRLRDLGGIVRAAGDIAVKK-----------GKKYVEREDVIEAVKM-AKPLEKQLADWY 386 (604)
T ss_dssp TCSTTEEECCHHHHHHHHHHHHHHHHHT-----------TCSSBCHHHHHHHHHH-TCCHHHHHHHHH
T ss_pred hccccccccCHHHHHHHHHHHHHHHHhc-----------CcccccHHHHHHHHHh-hhhhHHHHHHHH
Confidence 453 6899999999987666332 2246999999999965 333333334433
No 86
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=99.42 E-value=2.5e-13 Score=107.98 Aligned_cols=73 Identities=14% Similarity=0.137 Sum_probs=68.6
Q ss_pred HHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 52 GYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 52 ~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
.++++|+.++.+||+.|+.|+|++|+.+|++|+++|+.++++++++..+..++.|+.+|++|||+++..++..
T Consensus 8 ~~l~~A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~RAE~Lk~~l~~~ 80 (85)
T 2v6x_A 8 DFLTKGIELVQKAIDLDTATQYEEAYTAYYNGLDYLMLALKYEKNPKSKDLIRAKFTEYLNRAEQLKKHLESE 80 (85)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3688999999999999999999999999999999999999999999999999999999999999999987543
No 87
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=99.38 E-value=5.8e-13 Score=111.78 Aligned_cols=70 Identities=16% Similarity=0.187 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-CCCCCchhhhHHHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VPSYISTSEHEKVKSYRQKISKWQSQVS 122 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~~~~~~~~~~k~~~y~~raek~k~~i~ 122 (473)
++++|++++.+||+.|++|+|++|+.+|++|+++|+.+++++ .++..+..++.|+.+|++|||+|+.+++
T Consensus 14 ~l~kAi~lv~~Ave~D~ag~y~eAl~lY~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~RAE~LK~~l~ 84 (117)
T 2cpt_A 14 NLQKAIDLASKAAQEDKAGNYEEALQLYQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLDRAEKLKEYLK 84 (117)
T ss_dssp HHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999999999999988 6777789999999999999999999843
No 88
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=99.38 E-value=7e-13 Score=106.21 Aligned_cols=86 Identities=24% Similarity=0.318 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHH
Q 012000 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 370 ~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~ 449 (473)
|.++|.+||+.++++.++. ++.++..||+.|+||||+||.++|++|++.|+++. ...|+++||..|++
T Consensus 2 d~~~R~~Il~~~~~~~~~~-~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~-----------~~~i~~~df~~Al~ 69 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSVE-RGIRWELISRLCPNSTGAELRSVCTEAGMFAIRAR-----------RKVATEKDFLKAVD 69 (88)
T ss_dssp CSSHHHHHHHHHHTTSCBC-SCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHS-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHCCCCCC-CccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhc-----------cccCCHHHHHHHHH
Confidence 5678999999999987765 67899999999999999999999999999999983 24699999999999
Q ss_pred hhCCCCCHH-HHHHHHHHH
Q 012000 450 VIRPSLNKS-KWEELEQWN 467 (473)
Q Consensus 450 ~~~ps~~~~-~~~~~~~w~ 467 (473)
++.++..+. ....|.+|+
T Consensus 70 ~v~~~~~~~~~~~~y~~w~ 88 (88)
T 3vlf_B 70 KVISGYKKFSSTSRYMQYN 88 (88)
T ss_dssp HHTC---------------
T ss_pred HHhcCcccccchhHHhccC
Confidence 999988654 578888896
No 89
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.36 E-value=1.2e-12 Score=114.73 Aligned_cols=129 Identities=9% Similarity=0.055 Sum_probs=86.0
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchh--hhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSK--WVG 291 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~--~~g 291 (473)
+++|.....+.+.+.+... .....++||+||||||||++|++++... +.+|+ +++..+... ..+
T Consensus 2 ~iiG~s~~~~~~~~~~~~~----------a~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~~~~~~ 70 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQL----------SETDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNAPQLND 70 (145)
T ss_dssp --CCSSHHHHHHHHHHHHH----------TTCCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTSSCHHH
T ss_pred CceeCCHHHHHHHHHHHHH----------hCCCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcchhhhc
Confidence 6789888888888877522 2234679999999999999999999987 77899 998876543 223
Q ss_pred hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC-------CCCHHHhccccc-c
Q 012000 292 EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ-------ELDDAVLRRLVK-R 363 (473)
Q Consensus 292 ~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~-------~Ld~al~rRf~~-~ 363 (473)
..+..-..+++|||++... ......++..|... ...+.+|+|||.+. .+.+.+..|+.. .
T Consensus 71 ~~~~a~~g~l~ldei~~l~--------~~~q~~Ll~~l~~~----~~~~~~I~~t~~~~~~~~~~~~~~~~L~~rl~~~~ 138 (145)
T 3n70_A 71 FIALAQGGTLVLSHPEHLT--------REQQYHLVQLQSQE----HRPFRLIGIGDTSLVELAASNHIIAELYYCFAMTQ 138 (145)
T ss_dssp HHHHHTTSCEEEECGGGSC--------HHHHHHHHHHHHSS----SCSSCEEEEESSCHHHHHHHSCCCHHHHHHHHHHE
T ss_pred HHHHcCCcEEEEcChHHCC--------HHHHHHHHHHHhhc----CCCEEEEEECCcCHHHHHHcCCCCHHHHHHhcCCE
Confidence 3333445788899995443 33455566666432 23367888888642 456677667653 2
Q ss_pred cccCC
Q 012000 364 IYVPL 368 (473)
Q Consensus 364 i~~~~ 368 (473)
|.+|+
T Consensus 139 i~lPp 143 (145)
T 3n70_A 139 IACLP 143 (145)
T ss_dssp EECCC
T ss_pred EeCCC
Confidence 44443
No 90
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=99.34 E-value=1.3e-12 Score=103.50 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=65.5
Q ss_pred cHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHH
Q 012000 370 DENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMA 449 (473)
Q Consensus 370 ~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~ 449 (473)
|.++|.+||+.++++.++. ++.++..||+.|+||||+||.++|++|++.|+++. ..+|+++||..|++
T Consensus 2 d~~~R~~Il~~~l~~~~~~-~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~df~~Al~ 69 (83)
T 3aji_B 2 DRRQKRLIFSTITSKMNLS-EEVDLEDYVARPDKISGADINSICQESGMLAVREN-----------RYIVLAKDFEKAYK 69 (83)
T ss_dssp CHHHHHHHHHHHHTTSCBC-TTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC-----------CSSBCHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHH
Confidence 6789999999999987765 67899999999999999999999999999998763 25799999999999
Q ss_pred hhCCCCCHHHHHHHH
Q 012000 450 VIRPSLNKSKWEELE 464 (473)
Q Consensus 450 ~~~ps~~~~~~~~~~ 464 (473)
+++|+++ ++++.|+
T Consensus 70 ~~~ps~~-~~l~~y~ 83 (83)
T 3aji_B 70 TVIKKDE-QEHEFYK 83 (83)
T ss_dssp HHCC-----------
T ss_pred HHccCch-HHHHhcC
Confidence 9999999 7777663
No 91
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.31 E-value=3.5e-13 Score=117.98 Aligned_cols=130 Identities=12% Similarity=0.133 Sum_probs=83.7
Q ss_pred cccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhh-hhhhhh
Q 012000 217 DVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKW-VGEGEK 295 (473)
Q Consensus 217 divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~-~g~~~~ 295 (473)
+++|.+...+.+.+.+.... ....++||+||||||||++|++++.... +|+.+++..+...+ .+..+.
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~----------~~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~~~~~~~~~~ 73 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAA----------KRTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLIDMPMELLQK 73 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHH----------TCSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHHHCHHHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHh----------CCCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCChHhhhhHHHh
Confidence 57899999988888875321 2245799999999999999999999888 99999998875543 222223
Q ss_pred hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC-CC----CCHHHhccccc-ccccCC
Q 012000 296 LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP-QE----LDDAVLRRLVK-RIYVPL 368 (473)
Q Consensus 296 ~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~-~~----Ld~al~rRf~~-~i~~~~ 368 (473)
.-..+++|||++... ......++..++... ...+.+|+|||.+ .. +++.+..||.. .|.+|+
T Consensus 74 a~~~~l~lDei~~l~--------~~~q~~Ll~~l~~~~---~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~i~lPp 141 (143)
T 3co5_A 74 AEGGVLYVGDIAQYS--------RNIQTGITFIIGKAE---RCRVRVIASCSYAAGSDGISCEEKLAGLFSESVVRIPP 141 (143)
T ss_dssp TTTSEEEEEECTTCC--------HHHHHHHHHHHHHHT---TTTCEEEEEEEECTTTC--CHHHHHHHHSSSEEEEECC
T ss_pred CCCCeEEEeChHHCC--------HHHHHHHHHHHHhCC---CCCEEEEEecCCCHHHHHhCccHHHHHHhcCcEEeCCC
Confidence 335688899995543 223344555554321 2346788888754 33 34455556543 345544
No 92
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.30 E-value=3.7e-11 Score=122.60 Aligned_cols=199 Identities=14% Similarity=0.064 Sum_probs=127.3
Q ss_pred CcccccChHHHHHHHHHHH-hchhcchhhhhcCCCCCceEEE--EcCCCCcHHHHHHHHHHHc---------CCcEEEEe
Q 012000 214 KWEDVAGLEKAKQALMEMV-ILPAKRRDLFTGLRRPARGLLL--FGPPGNGKTMLAKAVASES---------QATFFNVS 281 (473)
Q Consensus 214 ~~~divGl~~~k~~L~e~v-~~p~~~~~~~~~~~~~~~~iLL--~GPpGtGKT~La~aiA~e~---------~~~~~~v~ 281 (473)
..++++|.+...+.|.+.+ ..... +....+..++| +||||+|||+|++++++++ +..++.++
T Consensus 20 ~p~~l~gR~~el~~l~~~l~~~~~~------~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (412)
T 1w5s_A 20 IPPELRVRRGEAEALARIYLNRLLS------GAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVN 93 (412)
T ss_dssp CCSSCSSSCHHHHHHHHHHHHHHHT------SSCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEE
T ss_pred CCCCCCChHHHHHHHHHHHhHHHhc------CCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEE
Confidence 3478999999999988877 42211 10123467999 9999999999999999876 45677777
Q ss_pred cCccc------hhh---h-------h----h----hhh-----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc
Q 012000 282 ASSLT------SKW---V-------G----E----GEK-----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV 332 (473)
Q Consensus 282 ~~~l~------~~~---~-------g----~----~~~-----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~ 332 (473)
+.... ... + + . ... ..+.++.|||++....... ........++..+...
T Consensus 94 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~--~~~~~l~~l~~~~~~~ 171 (412)
T 1w5s_A 94 AFNAPNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPR--IAAEDLYTLLRVHEEI 171 (412)
T ss_dssp GGGCCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTT--SCHHHHHHHHTHHHHS
T ss_pred CCCCCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccC--cchHHHHHHHHHHHhc
Confidence 53211 000 0 0 0 000 1134778999965432100 0122333344444322
Q ss_pred CCCCC--CcEEEEeecCCCC---CCC---HHHhcccccccccCCCcHHHHHHHHHHHhcc--CCCCCChhhHHHHHHHcC
Q 012000 333 TSNPN--DLVIVMGATNKPQ---ELD---DAVLRRLVKRIYVPLPDENVRRLLLKHKLKG--QAFSLPGGDLERLVRETE 402 (473)
Q Consensus 333 ~~~~~--~~v~vI~tTn~~~---~Ld---~al~rRf~~~i~~~~P~~~~r~~il~~~l~~--~~~~l~~~~l~~La~~t~ 402 (473)
. ... .++.||++|+.+. .++ +.+.+||..++.+++++.++..+++...+.. ....+++..+..++..+.
T Consensus 172 ~-~~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~~~~~~~~~~~i~~~~~ 250 (412)
T 1w5s_A 172 P-SRDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRDTVWEPRHLELISDVYG 250 (412)
T ss_dssp C-CTTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCTTSCCHHHHHHHHHHHC
T ss_pred c-cCCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHH
Confidence 1 112 5688888887665 234 6677788766999999999999999876642 122457888999999999
Q ss_pred ------CCCHHHHHHHHHHHHHHhHH
Q 012000 403 ------GYSGSDLQALCEEAAMMPIR 422 (473)
Q Consensus 403 ------g~s~~dL~~l~~~A~~~a~~ 422 (473)
| .++.+..++..|+..+..
T Consensus 251 ~~~~~~G-~p~~~~~l~~~a~~~a~~ 275 (412)
T 1w5s_A 251 EDKGGDG-SARRAIVALKMACEMAEA 275 (412)
T ss_dssp GGGTSCC-CHHHHHHHHHHHHHHHHH
T ss_pred HhccCCC-cHHHHHHHHHHHHHHHHH
Confidence 8 577888888887665543
No 93
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.29 E-value=1.3e-11 Score=121.75 Aligned_cols=157 Identities=13% Similarity=0.115 Sum_probs=106.6
Q ss_pred ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc------CCcEEEEecCc--cc----h
Q 012000 220 GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES------QATFFNVSASS--LT----S 287 (473)
Q Consensus 220 Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~------~~~~~~v~~~~--l~----~ 287 (473)
|++++.+.|+..+. ... .+++|||||||+|||++|+++|+.+ ...++.+++.+ .. .
T Consensus 1 g~~~~~~~L~~~i~-----------~~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~~~~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIE-----------KSE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGENIGIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHH-----------TCS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSSCBCHHHHH
T ss_pred ChHHHHHHHHHHHH-----------CCC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcCCCCHHHHH
Confidence 67778888888774 122 4689999999999999999999874 35778887653 21 1
Q ss_pred hhhhhhhh----hhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccc
Q 012000 288 KWVGEGEK----LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKR 363 (473)
Q Consensus 288 ~~~g~~~~----~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~ 363 (473)
..+..... .-+.++.||+++... ....+.|+..|+ .++.++++|.+|+.+..+.+++++| .
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt--------~~a~naLLk~LE----ep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT--------QQAANAFLKALE----EPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC--------HHHHHHTHHHHH----SCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC--------HHHHHHHHHHHh----CCCCCeEEEEEECChHhChHHHHce---e
Confidence 11111110 114688899995543 334677888887 4456688888889999999999999 7
Q ss_pred cccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHH
Q 012000 364 IYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQAL 412 (473)
Q Consensus 364 i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l 412 (473)
+.|++|+.++....+...+ + ++++.+ ....|..+..|..+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~---~--i~~~~~----~~~~g~~~~al~~l 173 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI---G--DLWEEL----PLLERDFKTALEAY 173 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH---T--THHHHC----GGGGTCHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh---C--CCHHHH----HHHCCCHHHHHHHH
Confidence 8999999999999888876 2 333333 33566555554433
No 94
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=99.29 E-value=3.9e-12 Score=101.28 Aligned_cols=78 Identities=27% Similarity=0.417 Sum_probs=70.3
Q ss_pred ccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHH
Q 012000 365 YVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDF 444 (473)
Q Consensus 365 ~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df 444 (473)
.-.+|+.++|.+||+.++++..+. ++.++..||+.|+||||+||.+||++|++.|+++. ..+|+++||
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l~-~dvdl~~LA~~T~G~SGADL~~l~~eAa~~alr~~-----------~~~I~~~df 74 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDF 74 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEEC-TTCCCHHHHHTCSSCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCCC-cccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHc-----------CCCCCHHHH
Confidence 457899999999999999987765 67899999999999999999999999999999874 257999999
Q ss_pred HHHHHhhCCC
Q 012000 445 QKAMAVIRPS 454 (473)
Q Consensus 445 ~~al~~~~ps 454 (473)
..|+++++|.
T Consensus 75 ~~Al~~v~p~ 84 (86)
T 2krk_A 75 EMAVAKVMQK 84 (86)
T ss_dssp HHHHHHHHCC
T ss_pred HHHHHHHccC
Confidence 9999999875
No 95
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=99.28 E-value=7.9e-12 Score=97.69 Aligned_cols=75 Identities=29% Similarity=0.481 Sum_probs=67.3
Q ss_pred CCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHH
Q 012000 367 PLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQK 446 (473)
Q Consensus 367 ~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~ 446 (473)
|+|+.++|.+||+.++.+..+. ++.++..||..|+||||+||.++|++|++.++++. ...|+++||..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~~-~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~~~-----------~~~i~~~d~~~ 68 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNLT-RGINLRKIAELMPGASGAEVKGVCTEAGMYALRER-----------RVHVTQEDFEM 68 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEEC-TTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCCC-CccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhC-----------CCCCCHHHHHH
Confidence 7899999999999999987664 67899999999999999999999999999999872 25699999999
Q ss_pred HHHhhCC
Q 012000 447 AMAVIRP 453 (473)
Q Consensus 447 al~~~~p 453 (473)
|++++..
T Consensus 69 Al~~v~~ 75 (78)
T 3kw6_A 69 AVAKVMQ 75 (78)
T ss_dssp HHHHHHC
T ss_pred HHHHHHh
Confidence 9998754
No 96
>2ymb_A MITD1, MIT domain-containing protein 1; protein transport, membrane, PLD; 3.40A {Homo sapiens}
Probab=99.15 E-value=3.7e-12 Score=120.23 Aligned_cols=72 Identities=13% Similarity=0.160 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhHHHHHHHHHHHHHHHHHHHH
Q 012000 53 YFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHEKVKSYRQKISKWQSQVSDR 124 (473)
Q Consensus 53 ~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~k~~~y~~raek~k~~i~~r 124 (473)
+...|++++++||++|++|+|++|+.+|++|+++|+.++++++++..++.++.|+.+|++|||++|+.+++.
T Consensus 19 ~~~~Ai~lv~~AVe~D~~g~y~eAl~lY~eaIe~Ll~alk~e~d~~~k~~lr~Ki~eYl~RAE~LK~~L~k~ 90 (257)
T 2ymb_A 19 QSTAAATVLKRAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMDRAENIKKYLDQE 90 (257)
T ss_dssp ------------------------------------------------------------------------
T ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 578899999999999999999999999999999999999999999999999999999999999999997644
No 97
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=99.06 E-value=3.1e-11 Score=95.28 Aligned_cols=80 Identities=21% Similarity=0.331 Sum_probs=49.4
Q ss_pred HHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhh
Q 012000 372 NVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVI 451 (473)
Q Consensus 372 ~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~ 451 (473)
++|.+||+.++++.++. ++.++..||..|+||||+||.++|++|++.|+++. ...|+++||..|++++
T Consensus 1 ~~R~~Il~~~l~~~~~~-~~vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~-----------~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 1 MERRLIFGTIASKMSLA-PEADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKN-----------RYVILQSDLEEAYATQ 68 (82)
T ss_dssp -------------CEEC-TTCCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTT-----------CSEECHHHHHHHHHTT
T ss_pred CHHHHHHHHHHcCCCCC-CcCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc-----------cCCcCHHHHHHHHHHH
Confidence 46899999999886654 57789999999999999999999999999999873 2469999999999998
Q ss_pred -CCCCCHHHHHHH
Q 012000 452 -RPSLNKSKWEEL 463 (473)
Q Consensus 452 -~ps~~~~~~~~~ 463 (473)
.|+.++++++.|
T Consensus 69 ~~~~~~~~~~~~y 81 (82)
T 2dzn_B 69 VKTDNTVDKFDFY 81 (82)
T ss_dssp CC-----------
T ss_pred HcCcCChHHHHhh
Confidence 477777777655
No 98
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.05 E-value=5.9e-10 Score=100.81 Aligned_cols=126 Identities=21% Similarity=0.161 Sum_probs=73.9
Q ss_pred cCCCCCCcccccC----hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEE
Q 012000 208 DRSPSVKWEDVAG----LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFN 279 (473)
Q Consensus 208 ~~~~~~~~~divG----l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~ 279 (473)
+++++.+|+++++ +..+.+.+++++.... ..+..+++|+||||||||+|+++++..+ +..++.
T Consensus 2 ~r~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~ 72 (180)
T 3ec2_A 2 KRYWNANLDTYHPKNVSQNRALLTIRVFVHNFN---------PEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF 72 (180)
T ss_dssp CSCTTCCSSSCCCCSHHHHHHHHHHHHHHHSCC---------GGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE
T ss_pred chhhhCccccccCCCHHHHHHHHHHHHHHHhcc---------ccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE
Confidence 4567889999987 3444455554443110 1224689999999999999999999876 556666
Q ss_pred EecCccchhhhhhhh----------hhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 280 VSASSLTSKWVGEGE----------KLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 280 v~~~~l~~~~~g~~~----------~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
++..++...+..... -.-..++.|||+... ..+......+..++.... .. +..+|.|||.+
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDE~~~~---~~~~~~~~~l~~ll~~~~---~~---~~~ii~tsn~~ 143 (180)
T 3ec2_A 73 FDTKDLIFRLKHLMDEGKDTKFLKTVLNSPVLVLDDLGSE---RLSDWQRELISYIITYRY---NN---LKSTIITTNYS 143 (180)
T ss_dssp EEHHHHHHHHHHHHHHTCCSHHHHHHHTCSEEEEETCSSS---CCCHHHHHHHHHHHHHHH---HT---TCEEEEECCCC
T ss_pred EEHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEeCCCCC---cCCHHHHHHHHHHHHHHH---Hc---CCCEEEEcCCC
Confidence 776666543321110 112468889999532 122333334444443331 11 13456677765
Q ss_pred CC
Q 012000 350 QE 351 (473)
Q Consensus 350 ~~ 351 (473)
..
T Consensus 144 ~~ 145 (180)
T 3ec2_A 144 LQ 145 (180)
T ss_dssp SC
T ss_pred hh
Confidence 43
No 99
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.02 E-value=5.6e-09 Score=107.21 Aligned_cols=209 Identities=18% Similarity=0.137 Sum_probs=123.8
Q ss_pred ccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHH-HHHcCCcEEEEe-cC---ccchh----
Q 012000 218 VAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAV-ASESQATFFNVS-AS---SLTSK---- 288 (473)
Q Consensus 218 ivGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~ai-A~e~~~~~~~v~-~~---~l~~~---- 288 (473)
|.|++.+|..|.-.+.-... . ....-++||.|+||| ||+||+++ +..+....+... ++ .+...
T Consensus 215 I~G~e~vK~aLll~L~GG~~--k-----~rgdihVLL~G~PGt-KS~Lar~i~~~i~pR~~ft~g~~ss~~gLt~s~r~~ 286 (506)
T 3f8t_A 215 LPGAEEVGKMLALQLFSCVG--K-----NSERLHVLLAGYPVV-CSEILHHVLDHLAPRGVYVDLRRTELTDLTAVLKED 286 (506)
T ss_dssp STTCHHHHHHHHHHHTTCCS--S-----GGGCCCEEEESCHHH-HHHHHHHHHHHTCSSEEEEEGGGCCHHHHSEEEEES
T ss_pred cCCCHHHHHHHHHHHcCCcc--c-----cCCceeEEEECCCCh-HHHHHHHHHHHhCCCeEEecCCCCCccCceEEEEcC
Confidence 89999998888766542100 0 011237999999999 99999999 776544333211 11 11100
Q ss_pred --h---hhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcCC-----CCCCcEEEEeecCCCC--------
Q 012000 289 --W---VGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVTS-----NPNDLVIVMGATNKPQ-------- 350 (473)
Q Consensus 289 --~---~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~~-----~~~~~v~vI~tTn~~~-------- 350 (473)
| .|.....-..++++|||. .........|+..|+.-.- .-+.++.||+|+|+..
T Consensus 287 tG~~~~~G~l~LAdgGvl~lDEIn--------~~~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~ 358 (506)
T 3f8t_A 287 RGWALRAGAAVLADGGILAVDHLE--------GAPEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPI 358 (506)
T ss_dssp SSEEEEECHHHHTTTSEEEEECCT--------TCCHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGG
T ss_pred CCcccCCCeeEEcCCCeeehHhhh--------hCCHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCc
Confidence 1 122222235788899993 4445566666666652110 1234589999999875
Q ss_pred ---CCCHHHhccccc-ccccCCCcHHHH---------HHHHHH---Hhc--cCCCCCChhhHHHHHH-------------
Q 012000 351 ---ELDDAVLRRLVK-RIYVPLPDENVR---------RLLLKH---KLK--GQAFSLPGGDLERLVR------------- 399 (473)
Q Consensus 351 ---~Ld~al~rRf~~-~i~~~~P~~~~r---------~~il~~---~l~--~~~~~l~~~~l~~La~------------- 399 (473)
.|++++++||+. .+.++.|+.+.- .+.++. +.+ .....++++..++|..
T Consensus 359 ~~~~Lp~alLDRFDLi~i~~d~pd~e~d~e~~~~~ls~e~L~~yi~~ar~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~ 438 (506)
T 3f8t_A 359 ARIDLDQDFLSHFDLIAFLGVDPRPGEPEEQDTEVPSYTLLRRYLLYAIREHPAPELTEEARKRLEHWYETRREEVEERL 438 (506)
T ss_dssp GGCCSCHHHHTTCSEEEETTC--------------CCHHHHHHHHHHHHHHCSCCEECHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccCCChHHhhheeeEEEecCCCChhHhhcccCCCCCHHHHHHHHHHHHhcCCCceeCHHHHHHHHHHHHHHhcCccccc
Confidence 889999999974 445666654431 111222 222 2234456665544432
Q ss_pred ----HcCCCCHHHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHHHhhCC
Q 012000 400 ----ETEGYSGSDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAMAVIRP 453 (473)
Q Consensus 400 ----~t~g~s~~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al~~~~p 453 (473)
..-|.|++.+..|++.|...|.-+.. ..++.+|+..|++-+..
T Consensus 439 ~~~~~~~giSpR~leaLiRlA~A~A~L~gR-----------~~V~~eDV~~Ai~L~~~ 485 (506)
T 3f8t_A 439 GMGLPTLPVTRRQLESVERLAKAHARMRLS-----------DDVEPEDVDIAAELVDW 485 (506)
T ss_dssp HTTCCCCCCCHHHHHHHHHHHHHHHHHTTC-----------SEECHHHHHHHHHHHHH
T ss_pred ccccccccccHHHHHHHHHHHHHHHHHcCc-----------CCCCHHHHHHHHHHHHH
Confidence 12378899999999988777755543 34888999999887643
No 100
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.00 E-value=6.4e-10 Score=135.31 Aligned_cols=134 Identities=19% Similarity=0.360 Sum_probs=89.4
Q ss_pred CceEEEEcCCCCcHHHHHHH-HHHHcCCcEEEEecCccchh-----hhhh----h-----------hhhhcceeeeeccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKA-VASESQATFFNVSASSLTSK-----WVGE----G-----------EKLVRTLFMIDSIM 307 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~a-iA~e~~~~~~~v~~~~l~~~-----~~g~----~-----------~~~~~~if~IDei~ 307 (473)
.+++||+||||||||++|+. ++...+..++.++.+...+. .+.. . ....+.|++|||+.
T Consensus 1267 ~~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFiDEin 1346 (2695)
T 4akg_A 1267 KRGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFCDEIN 1346 (2695)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEEETTT
T ss_pred CCeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHHhhhccccCCccccCCCCCceEEEEecccc
Confidence 46899999999999999955 55545677777776643221 1110 0 01223588899986
Q ss_pred cccccC-cchHHHHHHHHHHHHhcCcCCCCC------CcEEEEeecCCCC-----CCCHHHhcccccccccCCCcHHHHH
Q 012000 308 STRMAN-ENDASRRLKSEFLIQFDGVTSNPN------DLVIVMGATNKPQ-----ELDDAVLRRLVKRIYVPLPDENVRR 375 (473)
Q Consensus 308 ~~~~~~-~~~~~~~~~~~ll~~ldg~~~~~~------~~v~vI~tTn~~~-----~Ld~al~rRf~~~i~~~~P~~~~r~ 375 (473)
....+. .......++.+++ ...|+..... .++.+|||||+|. .|+++++||| ..++++.|+.+++.
T Consensus 1347 mp~~d~yg~q~~lelLRq~l-e~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P~~~~l~ 1424 (2695)
T 4akg_A 1347 LPKLDKYGSQNVVLFLRQLM-EKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYPSGKSLS 1424 (2695)
T ss_dssp CSCCCSSSCCHHHHHHHHHH-HTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCCTTTHHH
T ss_pred cccccccCchhHHHHHHHHH-hcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCCCHHHHH
Confidence 544332 2222333444444 3334432211 2489999999994 8999999999 66999999999999
Q ss_pred HHHHHHhcc
Q 012000 376 LLLKHKLKG 384 (473)
Q Consensus 376 ~il~~~l~~ 384 (473)
.|+..++..
T Consensus 1425 ~I~~~il~~ 1433 (2695)
T 4akg_A 1425 QIYEIYYKA 1433 (2695)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999988754
No 101
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=98.96 E-value=6.4e-09 Score=105.94 Aligned_cols=201 Identities=17% Similarity=0.157 Sum_probs=125.0
Q ss_pred cccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCccchh---
Q 012000 215 WEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLTSK--- 288 (473)
Q Consensus 215 ~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l~~~--- 288 (473)
++.++|.....+.+.+.+.. .......+||+|++||||+++|+++..... .+|+.++|+.+...
T Consensus 136 ~~~~ig~s~~m~~l~~~i~~----------~a~~~~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~ 205 (387)
T 1ny5_A 136 EEEYVFESPKMKEILEKIKK----------ISCAECPVLITGESGVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFE 205 (387)
T ss_dssp CCCCCCCSHHHHHHHHHHHH----------HTTCCSCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHH
T ss_pred chhhhhccHHhhHHHHHHHH----------hcCCCCCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHH
Confidence 45788877777777766642 122345689999999999999999988764 78999999876432
Q ss_pred --hhh---------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCc-----CCC--CCCcEEEEe
Q 012000 289 --WVG---------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGV-----TSN--PNDLVIVMG 344 (473)
Q Consensus 289 --~~g---------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~-----~~~--~~~~v~vI~ 344 (473)
.+| ..+..-..++++|+|+.. .......|+..++.- ... ..-.+.||+
T Consensus 206 ~elfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~l--------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~ 277 (387)
T 1ny5_A 206 AELFGYEKGAFTGAVSSKEGFFELADGGTLFLDEIGEL--------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILA 277 (387)
T ss_dssp HHHHCBCTTSSTTCCSCBCCHHHHTTTSEEEEESGGGC--------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEE
T ss_pred HHhcCCCCCCCCCcccccCCceeeCCCcEEEEcChhhC--------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEE
Confidence 111 112233457789999443 344555566555421 111 112478999
Q ss_pred ecCCC-------CCCCHHHhcccccccccCCCcH----HHHHHHHHHHhc----cCC---CCCChhhHHHHHHHcCCCCH
Q 012000 345 ATNKP-------QELDDAVLRRLVKRIYVPLPDE----NVRRLLLKHKLK----GQA---FSLPGGDLERLVRETEGYSG 406 (473)
Q Consensus 345 tTn~~-------~~Ld~al~rRf~~~i~~~~P~~----~~r~~il~~~l~----~~~---~~l~~~~l~~La~~t~g~s~ 406 (473)
|||.. ..+.+.+..|+.. +.+.+|.. +....|+.+++. +.+ ..++++.+..|.....-.+.
T Consensus 278 at~~~l~~~~~~g~fr~dl~~rl~~-~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~l~~~~wpGNv 356 (387)
T 1ny5_A 278 ATNRNIKELVKEGKFREDLYYRLGV-IEIEIPPLRERKEDIIPLANHFLKKFSRKYAKEVEGFTKSAQELLLSYPWYGNV 356 (387)
T ss_dssp EESSCHHHHHHTTSSCHHHHHHHTT-EEEECCCGGGCHHHHHHHHHHHHHHHHHHTTCCCCEECHHHHHHHHHSCCTTHH
T ss_pred eCCCCHHHHHHcCCccHHHHHhhcC-CeecCCcchhccccHHHHHHHHHHHHHHHcCCCCCCCCHHHHHHHHhCCCCcHH
Confidence 99863 2345555556542 33444544 344455555543 222 23577888888876554467
Q ss_pred HHHHHHHHHHHHHhHHHhcccccccccccCCCCcHHHHHHHH
Q 012000 407 SDLQALCEEAAMMPIRELGTNILTVKANQLRPLRYEDFQKAM 448 (473)
Q Consensus 407 ~dL~~l~~~A~~~a~~~~~~~~~~~~~~~~~~it~~df~~al 448 (473)
++|.+++++|+..+ ....|+.+|+...+
T Consensus 357 reL~~~i~~~~~~~--------------~~~~i~~~~l~~~~ 384 (387)
T 1ny5_A 357 RELKNVIERAVLFS--------------EGKFIDRGELSCLV 384 (387)
T ss_dssp HHHHHHHHHHHHHC--------------CSSEECHHHHHHHC
T ss_pred HHHHHHHHHHHHhC--------------CCCcCcHHHCcHhh
Confidence 89999999998764 11347777775543
No 102
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.92 E-value=1.1e-09 Score=128.24 Aligned_cols=136 Identities=15% Similarity=0.215 Sum_probs=86.7
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcc----------hhhhhc-----------------CCCCCce--EEEEcCCCCc
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKR----------RDLFTG-----------------LRRPARG--LLLFGPPGNG 261 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~----------~~~~~~-----------------~~~~~~~--iLL~GPpGtG 261 (473)
+.++|+||.|++++|+.+.+.+.+|+.. ++.|.. .+.+|+| +|||||||||
T Consensus 1015 ~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~G 1094 (1706)
T 3cmw_A 1015 SGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESSG 1094 (1706)
T ss_dssp ---------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTSS
T ss_pred CCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCCC
Confidence 4589999999999999999999999944 344443 2335566 9999999999
Q ss_pred HHHHHHHHHHHc---CCcEEEEecCccc------------hhhhhh----hhhhh-----------cceeeeeccccccc
Q 012000 262 KTMLAKAVASES---QATFFNVSASSLT------------SKWVGE----GEKLV-----------RTLFMIDSIMSTRM 311 (473)
Q Consensus 262 KT~La~aiA~e~---~~~~~~v~~~~l~------------~~~~g~----~~~~~-----------~~if~IDei~~~~~ 311 (473)
||+||++++.+. +.+.+.++..... ++|+++ +++.+ .+++++|+++....
T Consensus 1095 KT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~~~~i~~d~~~al~~ 1174 (1706)
T 3cmw_A 1095 KTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTP 1174 (1706)
T ss_dssp HHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCGGGCCC
T ss_pred hHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcCCeEEEeCchHhcCc
Confidence 999999999876 4455555554433 456655 54333 35666888763221
Q ss_pred c-------C--cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC
Q 012000 312 A-------N--ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP 349 (473)
Q Consensus 312 ~-------~--~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~ 349 (473)
. + +.....|.++++|..|+++... .+|+|| +||+.
T Consensus 1175 ~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~--~~v~v~-~~n~~ 1218 (1706)
T 3cmw_A 1175 KAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQ--SNTLLI-FINQI 1218 (1706)
T ss_dssp HHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHH--TTCEEE-EEECE
T ss_pred ccccccccccccccHHHHHHHHHHHHHHhhhcc--CCeEEE-Eeccc
Confidence 1 1 2356678899999999986543 336776 66653
No 103
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=98.81 E-value=1e-08 Score=94.17 Aligned_cols=93 Identities=22% Similarity=0.169 Sum_probs=59.0
Q ss_pred CCCCCCcccccChHH----HHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 209 RSPSVKWEDVAGLEK----AKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 209 ~~~~~~~~divGl~~----~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
++.+.+|+++++... +.+.+.+++... + ...++.+++|+||||||||+||++++.++ +.+++.++
T Consensus 18 ~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~---~-----~~~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 18 EILRASLSDVDLNDDGRIKAIRFAERFVAEY---E-----PGKKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp GGGCCCTTSSCCSSHHHHHHHHHHHHHHHHC---C-----SSCCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred HHHcCCHhhccCCChhHHHHHHHHHHHHHHh---h-----hccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 345679999998553 333344333211 0 01123789999999999999999999987 67788888
Q ss_pred cCccchhhhhhh--------hh--hhcceeeeeccccc
Q 012000 282 ASSLTSKWVGEG--------EK--LVRTLFMIDSIMST 309 (473)
Q Consensus 282 ~~~l~~~~~g~~--------~~--~~~~if~IDei~~~ 309 (473)
+.++...+.... .. .-..++.|||++..
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDei~~~ 127 (202)
T 2w58_A 90 VPELFRELKHSLQDQTMNEKLDYIKKVPVLMLDDLGAE 127 (202)
T ss_dssp HHHHHHHHHHC---CCCHHHHHHHHHSSEEEEEEECCC
T ss_pred hHHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 776554332110 00 11357889999553
No 104
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=98.79 E-value=6.4e-08 Score=97.82 Aligned_cols=187 Identities=21% Similarity=0.289 Sum_probs=118.7
Q ss_pred ccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCc--EEEEecCccchhh----
Q 012000 216 EDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQAT--FFNVSASSLTSKW---- 289 (473)
Q Consensus 216 ~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~--~~~v~~~~l~~~~---- 289 (473)
.+++|.......+.+.+... ......+|++|++||||+++|+++....+.. |+.++|..+....
T Consensus 129 ~~~ig~s~~~~~~~~~~~~~----------a~~~~~vli~GesGtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~ 198 (368)
T 3dzd_A 129 IEFVGEHPKILEIKRLIPKI----------AKSKAPVLITGESGTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESE 198 (368)
T ss_dssp CCCCCCSHHHHHHHHHHHHH----------HTSCSCEEEECCTTSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHH
T ss_pred ccccccchHHHHHHhhhhhh----------hccchhheEEeCCCchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHH
Confidence 56888888777777666421 1123469999999999999999998877543 9999998753321
Q ss_pred -hh---------------hhhhhhcceeeeeccccccccCcchHHHHHHHHHHHHhcCcC-----CCC--CCcEEEEeec
Q 012000 290 -VG---------------EGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQFDGVT-----SNP--NDLVIVMGAT 346 (473)
Q Consensus 290 -~g---------------~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ldg~~-----~~~--~~~v~vI~tT 346 (473)
+| ..+..-...+++|||+. ....+...|+..++.-. ... .-.+.+|++|
T Consensus 199 lfg~~~g~~tga~~~~~g~~~~a~~gtlfldei~~--------l~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at 270 (368)
T 3dzd_A 199 LFGHEKGAFTGALTRKKGKLELADQGTLFLDEVGE--------LDQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISAT 270 (368)
T ss_dssp HHEECSCSSSSCCCCEECHHHHTTTSEEEEETGGG--------SCHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEE
T ss_pred hcCccccccCCcccccCChHhhcCCCeEEecChhh--------CCHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEec
Confidence 11 12223345778999943 34455666666664211 110 1136789999
Q ss_pred CCC-------CCCCHHHhccccc-ccccCCCcH--HHHHHHHHHHhcc-------CCCCCChhhHHHHHHHcCCCCHHHH
Q 012000 347 NKP-------QELDDAVLRRLVK-RIYVPLPDE--NVRRLLLKHKLKG-------QAFSLPGGDLERLVRETEGYSGSDL 409 (473)
Q Consensus 347 n~~-------~~Ld~al~rRf~~-~i~~~~P~~--~~r~~il~~~l~~-------~~~~l~~~~l~~La~~t~g~s~~dL 409 (473)
|.. ..+.+.+..|+.. .|.+|+... +....++.+++.. ....++++.+..|......-+.++|
T Consensus 271 ~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di~~l~~~~l~~~~~~~~~~~~~~~~~a~~~L~~~~wpGNvreL 350 (368)
T 3dzd_A 271 NKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDVILLAEYFLKKFAKEYKKNCFELSEETKEYLMKQEWKGNVREL 350 (368)
T ss_dssp SSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHHHHHHHHHHHHHHHHTTCCCCCBCHHHHHHHHTCCCTTHHHHH
T ss_pred CCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhHHHHHHHHHHHHHHHcCCCCCCcCHHHHHHHHhCCCCcHHHHH
Confidence 853 2344566666653 355555444 4455555555532 2245788889999887644478999
Q ss_pred HHHHHHHHHHh
Q 012000 410 QALCEEAAMMP 420 (473)
Q Consensus 410 ~~l~~~A~~~a 420 (473)
.++++.|+..+
T Consensus 351 ~n~i~~~~~~~ 361 (368)
T 3dzd_A 351 KNLIERAVILC 361 (368)
T ss_dssp HHHHHHHHHTC
T ss_pred HHHHHHHHHhC
Confidence 99999987653
No 105
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=98.73 E-value=5.3e-08 Score=85.53 Aligned_cols=106 Identities=15% Similarity=0.245 Sum_probs=64.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEF 325 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~l 325 (473)
...++|+||+|+|||+|+++++..+ |...+.++..++....+ ..-..++.|||+...... . ...+-.+
T Consensus 36 g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~~----~~~~~lLilDE~~~~~~~----~-~~~l~~l 106 (149)
T 2kjq_A 36 GQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTDA----AFEAEYLAVDQVEKLGNE----E-QALLFSI 106 (149)
T ss_dssp CSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCGG----GGGCSEEEEESTTCCCSH----H-HHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHHH----HhCCCEEEEeCccccChH----H-HHHHHHH
Confidence 4679999999999999999999987 66688888777654311 122568889999653211 1 2222233
Q ss_pred HHHhcCcCCCCCCcEEEEeecCCCCCCC--HHHhcccccccccC
Q 012000 326 LIQFDGVTSNPNDLVIVMGATNKPQELD--DAVLRRLVKRIYVP 367 (473)
Q Consensus 326 l~~ldg~~~~~~~~v~vI~tTn~~~~Ld--~al~rRf~~~i~~~ 367 (473)
+..+ ... +..++||++...|..+. +.+++||..-..+.
T Consensus 107 i~~~---~~~-g~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 107 FNRF---RNS-GKGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp HHHH---HHH-TCCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred HHHH---HHc-CCcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 3322 111 12224444433555443 89999987544443
No 106
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=98.73 E-value=2e-07 Score=92.29 Aligned_cols=182 Identities=18% Similarity=0.214 Sum_probs=112.4
Q ss_pred CCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc---
Q 012000 210 SPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT--- 286 (473)
Q Consensus 210 ~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~--- 286 (473)
.|+..-+.++|.+...+.|.+.+.. ...++|+||+|+|||+|++.++++.+ ++.+++....
T Consensus 6 ~~~~~~~~~~gR~~el~~L~~~l~~--------------~~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~ 69 (350)
T 2qen_A 6 RPKTRREDIFDREEESRKLEESLEN--------------YPLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAER 69 (350)
T ss_dssp SCCCSGGGSCSCHHHHHHHHHHHHH--------------CSEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTT
T ss_pred CCCCChHhcCChHHHHHHHHHHHhc--------------CCeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccc
Confidence 4566778899999999999887741 14799999999999999999999886 5555543210
Q ss_pred ---------h---hhh----------------------------hh----hhh----hhcceeeeeccccccccCcchHH
Q 012000 287 ---------S---KWV----------------------------GE----GEK----LVRTLFMIDSIMSTRMANENDAS 318 (473)
Q Consensus 287 ---------~---~~~----------------------------g~----~~~----~~~~if~IDei~~~~~~~~~~~~ 318 (473)
. ..+ .. ... .-+.++.|||++....... ...
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vlvlDe~~~~~~~~~-~~~ 148 (350)
T 2qen_A 70 GHITREELIKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELGEFIVAFDEAQYLRFYGS-RGG 148 (350)
T ss_dssp TCBCHHHHHHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHSCEEEEEETGGGGGGBTT-TTT
T ss_pred cCCCHHHHHHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccCCEEEEEeCHHHHhccCc-cch
Confidence 0 000 00 000 0145777999965442100 011
Q ss_pred HHHHHHHHHHhcCcCCCCCCcEEEEeecCCCC---------CCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCC
Q 012000 319 RRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQ---------ELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSL 389 (473)
Q Consensus 319 ~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~---------~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l 389 (473)
......+...++.. .++.+|.|+.... .....+..|+...+.+++.+.++..+++...+...+..+
T Consensus 149 ~~~~~~L~~~~~~~-----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~~~ 223 (350)
T 2qen_A 149 KELLALFAYAYDSL-----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNLDV 223 (350)
T ss_dssp HHHHHHHHHHHHHC-----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTCCC
T ss_pred hhHHHHHHHHHHhc-----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCCCC
Confidence 12222222222211 1355555554321 112223346656789999999999999998887777777
Q ss_pred ChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 390 PGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 390 ~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
++..+..+...|.|+ +.-+..++.
T Consensus 224 ~~~~~~~i~~~tgG~-P~~l~~~~~ 247 (350)
T 2qen_A 224 PENEIEEAVELLDGI-PGWLVVFGV 247 (350)
T ss_dssp CHHHHHHHHHHHTTC-HHHHHHHHH
T ss_pred CHHHHHHHHHHhCCC-HHHHHHHHH
Confidence 888999999999995 445555554
No 107
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.70 E-value=2.3e-07 Score=92.00 Aligned_cols=178 Identities=11% Similarity=0.073 Sum_probs=108.0
Q ss_pred CCCCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc---
Q 012000 209 RSPSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL--- 285 (473)
Q Consensus 209 ~~~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l--- 285 (473)
..|+...+.++|.+...+.|.+ +.. ..++|+||+|+|||+|++.++++.+..++.+++...
T Consensus 6 ~~~~~~~~~~~gR~~el~~L~~-l~~---------------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~ 69 (357)
T 2fna_A 6 TSPKDNRKDFFDREKEIEKLKG-LRA---------------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEER 69 (357)
T ss_dssp SSCCCSGGGSCCCHHHHHHHHH-TCS---------------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTC
T ss_pred CCCCCCHHHhcChHHHHHHHHH-hcC---------------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccc
Confidence 3456677889999999988887 531 379999999999999999999998777777765432
Q ss_pred --ch--hh----------------------------------------------hhh----hhhh--hcceeeeeccccc
Q 012000 286 --TS--KW----------------------------------------------VGE----GEKL--VRTLFMIDSIMST 309 (473)
Q Consensus 286 --~~--~~----------------------------------------------~g~----~~~~--~~~if~IDei~~~ 309 (473)
.+ .. +.. .... -+.++.|||++..
T Consensus 70 ~~~~~~~~~~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~ 149 (357)
T 2fna_A 70 NYISYKDFLLELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQEL 149 (357)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGG
T ss_pred cCCCHHHHHHHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHh
Confidence 00 00 000 0000 1446779999665
Q ss_pred cccCcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCC---------CCHHHhcccccccccCCCcHHHHHHHHHH
Q 012000 310 RMANENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQE---------LDDAVLRRLVKRIYVPLPDENVRRLLLKH 380 (473)
Q Consensus 310 ~~~~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~---------Ld~al~rRf~~~i~~~~P~~~~r~~il~~ 380 (473)
........ ...+..+... . .++.+|.|++.... ....+..|+...+.+++.+.++..+++..
T Consensus 150 ~~~~~~~~-~~~l~~~~~~---~-----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~ 220 (357)
T 2fna_A 150 VKLRGVNL-LPALAYAYDN---L-----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRR 220 (357)
T ss_dssp GGCTTCCC-HHHHHHHHHH---C-----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHH
T ss_pred hccCchhH-HHHHHHHHHc---C-----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHH
Confidence 43111111 1122222221 1 13556656553211 11223346556789999999999999988
Q ss_pred HhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHH
Q 012000 381 KLKGQAFSLPGGDLERLVRETEGYSGSDLQALCE 414 (473)
Q Consensus 381 ~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~ 414 (473)
.+...+...++ ...+...|.|+ +.-+..++.
T Consensus 221 ~~~~~~~~~~~--~~~i~~~t~G~-P~~l~~~~~ 251 (357)
T 2fna_A 221 GFQEADIDFKD--YEVVYEKIGGI-PGWLTYFGF 251 (357)
T ss_dssp HHHHHTCCCCC--HHHHHHHHCSC-HHHHHHHHH
T ss_pred HHHHcCCCCCc--HHHHHHHhCCC-HHHHHHHHH
Confidence 77644444333 37888889985 445555544
No 108
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.68 E-value=8.9e-08 Score=88.01 Aligned_cols=108 Identities=15% Similarity=0.180 Sum_probs=61.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchhhhhhhhhhhcceeeeeccccccccCcchHHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSKWVGEGEKLVRTLFMIDSIMSTRMANENDASRRLKSEFLIQ 328 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~~~g~~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~ 328 (473)
.+++|||||||||||++|.++|+.+...++.+..+. ...|..... -..++.|||++. ...+.+...+...
T Consensus 58 kn~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s~f~l~~l~--~~kIiiLDEad~-------~~~~~~d~~lrn~ 127 (212)
T 1tue_A 58 KNCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-SHFWLEPLT--DTKVAMLDDATT-------TCWTYFDTYMRNA 127 (212)
T ss_dssp CSEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-SCGGGGGGT--TCSSEEEEEECH-------HHHHHHHHHCHHH
T ss_pred ccEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-chhhhcccC--CCCEEEEECCCc-------hhHHHHHHHHHHH
Confidence 358999999999999999999999876655432111 111111111 135778999852 1222333445556
Q ss_pred hcCcC----CCCC-----CcEEEEeecCCCC---CCCHHHhcccccccccC
Q 012000 329 FDGVT----SNPN-----DLVIVMGATNKPQ---ELDDAVLRRLVKRIYVP 367 (473)
Q Consensus 329 ldg~~----~~~~-----~~v~vI~tTn~~~---~Ld~al~rRf~~~i~~~ 367 (473)
++|.. .... ....+|.|||..- ..-+.|.+|+.. +.|+
T Consensus 128 ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi~~-f~F~ 177 (212)
T 1tue_A 128 LDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRITV-FEFP 177 (212)
T ss_dssp HHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSCEE-EECC
T ss_pred hCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhEEE-EEcC
Confidence 67641 1111 1124666888632 234678888763 4444
No 109
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.59 E-value=7.8e-08 Score=94.82 Aligned_cols=90 Identities=20% Similarity=0.217 Sum_probs=56.6
Q ss_pred CCCCcccccChH----HHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC----CcEEEEec
Q 012000 211 PSVKWEDVAGLE----KAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSA 282 (473)
Q Consensus 211 ~~~~~~divGl~----~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~----~~~~~v~~ 282 (473)
.+.+|+++++.. .+.+.+.+++... + ..+..+++||||||||||+||+++|.++. .+++.+++
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~---~------~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~ 189 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQY---P------SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHF 189 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHC---S------CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhc---c------ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEH
Confidence 457899998743 2333444444311 0 11247899999999999999999998654 77777877
Q ss_pred Cccchhhhhhh--------hh--hhcceeeeeccccc
Q 012000 283 SSLTSKWVGEG--------EK--LVRTLFMIDSIMST 309 (473)
Q Consensus 283 ~~l~~~~~g~~--------~~--~~~~if~IDei~~~ 309 (473)
++++..+.... .. .-..++.|||++..
T Consensus 190 ~~l~~~l~~~~~~~~~~~~~~~~~~~~lLiiDdig~~ 226 (308)
T 2qgz_A 190 PSFAIDVKNAISNGSVKEEIDAVKNVPVLILDDIGAE 226 (308)
T ss_dssp HHHHHHHHCCCC----CCTTHHHHTSSEEEEETCCC-
T ss_pred HHHHHHHHHHhccchHHHHHHHhcCCCEEEEcCCCCC
Confidence 76654332210 01 11357889999543
No 110
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.53 E-value=4.4e-07 Score=90.50 Aligned_cols=156 Identities=14% Similarity=0.067 Sum_probs=102.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CC-c--EEEEecCccchhhhhhhh----hhhcceeeeecccc-ccccCcchH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QA-T--FFNVSASSLTSKWVGEGE----KLVRTLFMIDSIMS-TRMANENDA 317 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~-~--~~~v~~~~l~~~~~g~~~----~~~~~if~IDei~~-~~~~~~~~~ 317 (473)
++.+|||||+|+||++.++++++.+ +. + .+.++...-......... ..-+.++.||+.+. ..
T Consensus 18 ~~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~------- 90 (343)
T 1jr3_D 18 RAAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDPNTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN------- 90 (343)
T ss_dssp CSEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCTTCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC-------
T ss_pred CcEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecCCCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC-------
Confidence 5689999999999999999998865 32 2 233332211111111110 01146778998854 21
Q ss_pred HHHHHHHHHHHhcCcCCCCCCcEEEEeecCCC------CCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCCh
Q 012000 318 SRRLKSEFLIQFDGVTSNPNDLVIVMGATNKP------QELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPG 391 (473)
Q Consensus 318 ~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~------~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~ 391 (473)
....+.|+..++. ++..+++|.+|+.+ ..+.+++.+|+. ++.+..++..+....++..+...++.+++
T Consensus 91 -~~~~~aLl~~le~----p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~~-~~~~~~l~~~~l~~~l~~~~~~~g~~i~~ 164 (343)
T 1jr3_D 91 -AAINEQLLTLTGL----LHDDLLLIVRGNKLSKAQENAAWFTALANRSV-QVTCQTPEQAQLPRWVAARAKQLNLELDD 164 (343)
T ss_dssp -TTHHHHHHHHHTT----CBTTEEEEEEESCCCTTTTTSHHHHHHTTTCE-EEEECCCCTTHHHHHHHHHHHHTTCEECH
T ss_pred -hHHHHHHHHHHhc----CCCCeEEEEEcCCCChhhHhhHHHHHHHhCce-EEEeeCCCHHHHHHHHHHHHHHcCCCCCH
Confidence 1234556666653 23334444444432 346788888985 48888889999999999999999999999
Q ss_pred hhHHHHHHHcCCCCHHHHHHHHHHHHH
Q 012000 392 GDLERLVRETEGYSGSDLQALCEEAAM 418 (473)
Q Consensus 392 ~~l~~La~~t~g~s~~dL~~l~~~A~~ 418 (473)
+.+..|+..+.| +.+++.+.++..+.
T Consensus 165 ~a~~~l~~~~~g-dl~~~~~elekl~l 190 (343)
T 1jr3_D 165 AANQVLCYCYEG-NLLALAQALERLSL 190 (343)
T ss_dssp HHHHHHHHSSTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhch-HHHHHHHHHHHHHH
Confidence 999999998887 56666666666554
No 111
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.45 E-value=3.9e-07 Score=87.32 Aligned_cols=27 Identities=37% Similarity=0.571 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
.++++||||||||||++|++||+.+..
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l 130 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF 130 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc
Confidence 568999999999999999999998654
No 112
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.34 E-value=2.5e-06 Score=104.99 Aligned_cols=133 Identities=20% Similarity=0.238 Sum_probs=83.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEEecCccch--hhhhhhh-------------------hhhcceeeeecc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES-QATFFNVSASSLTS--KWVGEGE-------------------KLVRTLFMIDSI 306 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~~~~l~~--~~~g~~~-------------------~~~~~if~IDei 306 (473)
.+++||+||||||||+++......+ +.+++.++++.-.+ ...+..+ ...+.+++||||
T Consensus 1304 ~~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFiDDi 1383 (3245)
T 3vkg_A 1304 HRPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFCDEI 1383 (3245)
T ss_dssp TCCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEETTT
T ss_pred CCcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEeccc
Confidence 3579999999999998876654443 55677777654322 0111000 012357889999
Q ss_pred ccccccC-cchHHHHHHHHHHHHhcCcCCCC------CCcEEEEeecCCC-----CCCCHHHhcccccccccCCCcHHHH
Q 012000 307 MSTRMAN-ENDASRRLKSEFLIQFDGVTSNP------NDLVIVMGATNKP-----QELDDAVLRRLVKRIYVPLPDENVR 374 (473)
Q Consensus 307 ~~~~~~~-~~~~~~~~~~~ll~~ldg~~~~~------~~~v~vI~tTn~~-----~~Ld~al~rRf~~~i~~~~P~~~~r 374 (473)
.-...+. .....-.++.+++.. .|..... -..+.+|||+|+| ..|+++++|||.. ++++.|+.++.
T Consensus 1384 Nmp~~D~yGtQ~~ielLrqlld~-~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F~v-i~i~~ps~esL 1461 (3245)
T 3vkg_A 1384 NLPSTDKYGTQRVITFIRQMVEK-GGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHAPI-LLVDFPSTSSL 1461 (3245)
T ss_dssp TCCCCCTTSCCHHHHHHHHHHHH-SEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTCCE-EECCCCCHHHH
T ss_pred CCCCccccccccHHHHHHHHHHc-CCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhceE-EEeCCCCHHHH
Confidence 6544332 111222333444432 2222211 1347899999998 4699999999976 89999999999
Q ss_pred HHHHHHHhc
Q 012000 375 RLLLKHKLK 383 (473)
Q Consensus 375 ~~il~~~l~ 383 (473)
..|+..++.
T Consensus 1462 ~~If~til~ 1470 (3245)
T 3vkg_A 1462 TQIYGTFNR 1470 (3245)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999876554
No 113
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.30 E-value=4.7e-07 Score=83.40 Aligned_cols=116 Identities=14% Similarity=0.160 Sum_probs=71.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH--------cC-CcEEEEecCccchhhh----------h---------hh------hh
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE--------SQ-ATFFNVSASSLTSKWV----------G---------EG------EK 295 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e--------~~-~~~~~v~~~~l~~~~~----------g---------~~------~~ 295 (473)
.-+|++|+||||||++|.+++.. .| .+++..+..++...+. . .. ..
T Consensus 6 mi~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~ 85 (199)
T 2r2a_A 6 EICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPE 85 (199)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGG
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhccc
Confidence 46889999999999999886543 23 5565555554422111 0 00 11
Q ss_pred hhcceeeeeccccccccC--cchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCCCcHHH
Q 012000 296 LVRTLFMIDSIMSTRMAN--ENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPLPDENV 373 (473)
Q Consensus 296 ~~~~if~IDei~~~~~~~--~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~P~~~~ 373 (473)
....++.|||........ ..+.. .++..+.. .....+-||.+|+.+..|+.++++|+...++++.|....
T Consensus 86 ~~~~vliIDEAq~l~~~~~~~~e~~-----rll~~l~~---~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~~ 157 (199)
T 2r2a_A 86 NIGSIVIVDEAQDVWPARSAGSKIP-----ENVQWLNT---HRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMGM 157 (199)
T ss_dssp GTTCEEEETTGGGTSBCCCTTCCCC-----HHHHGGGG---TTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSCC
T ss_pred cCceEEEEEChhhhccCccccchhH-----HHHHHHHh---cCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccCc
Confidence 226788899997753211 11111 24444432 223345677788889999999999999888888765443
No 114
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.27 E-value=2.8e-06 Score=103.83 Aligned_cols=164 Identities=13% Similarity=0.111 Sum_probs=98.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh-hhhh---hhhhhcceeeeeccccccccCcchHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-WVGE---GEKLVRTLFMIDSIMSTRMANENDASRRLKSE 324 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-~~g~---~~~~~~~if~IDei~~~~~~~~~~~~~~~~~~ 324 (473)
..|.++.||||||||.+++++|+.+|.+++.++|++-+.. .++. ........+.+||+.+...+........ +..
T Consensus 645 ~~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~~~lg~~~~g~~~~Gaw~~~DE~nr~~~evLs~l~~~-l~~ 723 (2695)
T 4akg_A 645 KYGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDYQVLSRLLVGITQIGAWGCFDEFNRLDEKVLSAVSAN-IQQ 723 (2695)
T ss_dssp TCEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHH-HHH
T ss_pred CCCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCChhHhhHHHHHHHhcCCEeeehhhhhcChHHHHHHHHH-HHH
Confidence 3579999999999999999999999999999999865432 1111 1112246777999965443221111111 111
Q ss_pred HHHHh---------cCcCCCCCCcEEEEeecCC----CCCCCHHHhcccccccccCCCcHHHHHHHHHHHhccCCCCCCh
Q 012000 325 FLIQF---------DGVTSNPNDLVIVMGATNK----PQELDDAVLRRLVKRIYVPLPDENVRRLLLKHKLKGQAFSLPG 391 (473)
Q Consensus 325 ll~~l---------dg~~~~~~~~v~vI~tTn~----~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~ 391 (473)
+...+ .|-.-.-...+.|++|.|+ ...|++++++||. .+.+..||.+...+++.... |+....
T Consensus 724 i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~g~~eLP~~Lk~~Fr-~v~m~~Pd~~~i~ei~l~s~---Gf~~a~ 799 (2695)
T 4akg_A 724 IQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYNGRSELPENLKKSFR-EFSMKSPQSGTIAEMILQIM---GFEDSK 799 (2695)
T ss_dssp HHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSSSSCCCCHHHHTTEE-EEECCCCCHHHHHHHHHHHH---HCSSHH
T ss_pred HHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCccCcccccHHHHhheE-EEEeeCCCHHHHHHHHHHhc---CCCchH
Confidence 11211 1111111234667788884 4479999999995 58999999998888754322 232122
Q ss_pred hhHHH-------HHHHcC-----CCCHHHHHHHHHHHH
Q 012000 392 GDLER-------LVRETE-----GYSGSDLQALCEEAA 417 (473)
Q Consensus 392 ~~l~~-------La~~t~-----g~s~~dL~~l~~~A~ 417 (473)
..... +.+... .|.-+.|+.++..|.
T Consensus 800 ~la~kiv~~~~l~~e~ls~q~hydfglRalksvL~~ag 837 (2695)
T 4akg_A 800 SLASKIVHFLELLSSKCSSMNHYHFGLRTLKGVLRNCS 837 (2695)
T ss_dssp HHHHHHHHHHHHHHHHSCCCTTCCCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCcCCcccccHHHHHHHHHHHH
Confidence 21111 112222 366788888877653
No 115
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=98.22 E-value=6.7e-07 Score=90.42 Aligned_cols=113 Identities=18% Similarity=0.094 Sum_probs=66.3
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc-hhhhhhhhhhhcceeeeeccccccc---cCcchHHHHH
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT-SKWVGEGEKLVRTLFMIDSIMSTRM---ANENDASRRL 321 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~-~~~~g~~~~~~~~if~IDei~~~~~---~~~~~~~~~~ 321 (473)
..++..++|+||||+|||||+++++...+..++.+....-. ..+++..- -..++.+|++..... ..........
T Consensus 166 i~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~~~~~~~lg~~~--q~~~~l~dd~~~~~~~~r~l~~~~~~~~ 243 (377)
T 1svm_A 166 IPKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPLDRLNFELGVAI--DQFLVVFEDVKGTGGESRDLPSGQGINN 243 (377)
T ss_dssp CTTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCTTTHHHHHGGGT--TCSCEEETTCCCSTTTTTTCCCCSHHHH
T ss_pred cCCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccchhHHHHHHHhc--chhHHHHHHHHHHHHHHhhccccCcchH
Confidence 34557899999999999999999999998877664433211 11222211 123345777754332 0000000012
Q ss_pred HHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhc--ccccccccCC
Q 012000 322 KSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVKRIYVPL 368 (473)
Q Consensus 322 ~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~r--Rf~~~i~~~~ 368 (473)
...+...++|. +.|+.+||+++.+ +++.+ |++..++...
T Consensus 244 ~~~l~~~ldG~-------v~v~~~tn~~~~l-~alf~pg~ld~~~~~l~ 284 (377)
T 1svm_A 244 LDNLRDYLDGS-------VKVNLEKKHLNKR-TQIFPPGIVTMNEYSVP 284 (377)
T ss_dssp HHTTHHHHHCS-------SCEEECCSSSCCE-EECCCCEEEEECSCCCC
T ss_pred HHHHHHHhcCC-------CeEeeccCchhhH-HHhhcCcccChhHHhhc
Confidence 23445556653 4567789999998 56665 6766665544
No 116
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.17 E-value=9.8e-07 Score=86.70 Aligned_cols=104 Identities=19% Similarity=0.223 Sum_probs=55.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC--cEEEEecCccchhhhhhh----------hhhhcceeeeeccccccccCcc-
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA--TFFNVSASSLTSKWVGEG----------EKLVRTLFMIDSIMSTRMANEN- 315 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~--~~~~v~~~~l~~~~~g~~----------~~~~~~if~IDei~~~~~~~~~- 315 (473)
...++|+||||||||+||.++|.+.+. .|+.+...+.++.+.... -...+ ++.||++.........
T Consensus 123 gsviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~~-LLVIDsI~aL~~~~~~~ 201 (331)
T 2vhj_A 123 SGMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQHR-VIVIDSLKNVIGAAGGN 201 (331)
T ss_dssp SEEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHCS-EEEEECCTTTC------
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhCC-EEEEecccccccccccc
Confidence 355799999999999999999987543 466652122211111111 11112 7889999876443221
Q ss_pred ---hHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCCCCCCCHHH
Q 012000 316 ---DASRRLKSEFLIQFDGVTSNPNDLVIVMGATNKPQELDDAV 356 (473)
Q Consensus 316 ---~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al 356 (473)
....+...+++..|.++... .++.+|+++| +...++++
T Consensus 202 s~~G~v~~~lrqlL~~L~~~~k~--~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 202 TTSGGISRGAFDLLSDIGAMAAS--RGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp -----CCHHHHHHHHHHHHHHHH--HTCEEEEECC-CSSCSSSH
T ss_pred cccchHHHHHHHHHHHHHHHHhh--CCCEEEEEeC-CcccchhH
Confidence 01123344444444433221 2256777888 45555543
No 117
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=97.82 E-value=6.1e-05 Score=92.99 Aligned_cols=129 Identities=15% Similarity=0.087 Sum_probs=80.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccchh-hhhhh---hhhhcceeeeeccccccccCcchHHHHHH---
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTSK-WVGEG---EKLVRTLFMIDSIMSTRMANENDASRRLK--- 322 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~~-~~g~~---~~~~~~if~IDei~~~~~~~~~~~~~~~~--- 322 (473)
.|..+.||+|||||.+++.+|+.+|.+++.++|++-+.- .+|.. -........+||+.+...+...-....+.
T Consensus 605 ~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~~~~g~i~~G~~~~GaW~cfDEfNrl~~~vLSvv~~qi~~I~ 684 (3245)
T 3vkg_A 605 MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDLQAMSRIFVGLCQCGAWGCFDEFNRLEERILSAVSQQIQTIQ 684 (3245)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCHHHHHHHHHHHHHHTCEEEEETTTSSCHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCHHHHHHHHhhHhhcCcEEEehhhhcCCHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999865432 12211 11234555689995543221111111111
Q ss_pred HHHHHH-----hc-CcCCCCCCcEEEEeecCC----CCCCCHHHhcccccccccCCCcHHHHHHHHH
Q 012000 323 SEFLIQ-----FD-GVTSNPNDLVIVMGATNK----PQELDDAVLRRLVKRIYVPLPDENVRRLLLK 379 (473)
Q Consensus 323 ~~ll~~-----ld-g~~~~~~~~v~vI~tTn~----~~~Ld~al~rRf~~~i~~~~P~~~~r~~il~ 379 (473)
..+... +. |-.-.-...+.|+.|.|+ ...|++.++.||.. +.+..||.+...+|+-
T Consensus 685 ~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY~gr~eLP~nLk~lFr~-v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 685 VALKENSKEVELLGGKNISLHQDMGIFVTMNPGYAGRSNLPDNLKKLFRS-MAMIKPDREMIAQVML 750 (3245)
T ss_dssp HHHHHTCSEECCC---CEECCTTCEEEECBCCCGGGCCCSCHHHHTTEEE-EECCSCCHHHHHHHHH
T ss_pred HHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCccCcccChHHHHhhcEE-EEEeCCCHHHHHHHHH
Confidence 111110 01 211111234667778884 45899999999965 9999999998888754
No 118
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.79 E-value=0.00015 Score=69.02 Aligned_cols=32 Identities=28% Similarity=0.406 Sum_probs=29.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
-++|.|||||||||||+.||..++..++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 47899999999999999999999998887665
No 119
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.73 E-value=2e-05 Score=70.28 Aligned_cols=38 Identities=21% Similarity=0.347 Sum_probs=32.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
+.-|+|+||||+||||++++++..++.+++.++...+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~D~~~ 40 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGVDSLI 40 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcCCCeEEeccchHh
Confidence 35689999999999999999999999888877655443
No 120
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.68 E-value=2.2e-05 Score=70.51 Aligned_cols=33 Identities=21% Similarity=0.407 Sum_probs=29.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
++.|+|+|||||||||+++.+|..++.+++..+
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~d 37 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDSD 37 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEECh
Confidence 457999999999999999999999999888643
No 121
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=97.64 E-value=0.00034 Score=71.82 Aligned_cols=159 Identities=13% Similarity=0.182 Sum_probs=109.1
Q ss_pred cceeeeecccccccc---Ccch-HHHHHHHHHHHHhcCcCCC------CCCcEEEEeec----CCCCCCCHHHhcccccc
Q 012000 298 RTLFMIDSIMSTRMA---NEND-ASRRLKSEFLIQFDGVTSN------PNDLVIVMGAT----NKPQELDDAVLRRLVKR 363 (473)
Q Consensus 298 ~~if~IDei~~~~~~---~~~~-~~~~~~~~ll~~ldg~~~~------~~~~v~vI~tT----n~~~~Ld~al~rRf~~~ 363 (473)
..++++|+++..... .... ....+...||..|++-... ...+|++|+|. +.|.++.|+|++||..+
T Consensus 251 ~~il~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~ 330 (444)
T 1g41_A 251 NGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIR 330 (444)
T ss_dssp HCEEEEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEE
T ss_pred CCeeeHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhccccee
Confidence 457889999876543 1222 2334677899999874211 23568999887 35566779999999999
Q ss_pred cccCCCcHHHHHHHHH--------H---Hh--ccCCCCCChhhHHHHHHH-------cCCCCHHHHHHHHHHHHHHhHHH
Q 012000 364 IYVPLPDENVRRLLLK--------H---KL--KGQAFSLPGGDLERLVRE-------TEGYSGSDLQALCEEAAMMPIRE 423 (473)
Q Consensus 364 i~~~~P~~~~r~~il~--------~---~l--~~~~~~l~~~~l~~La~~-------t~g~s~~dL~~l~~~A~~~a~~~ 423 (473)
+.++.++.++...|+. . .+ ....+.++++.+..|++. |...-++-|..++..++.....+
T Consensus 331 i~l~~lt~~e~~~Il~~~~~~l~~q~~~~~~~~~~~l~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ie~~~~~~~~~ 410 (444)
T 1g41_A 331 VELTALSAADFERILTEPHASLTEQYKALMATEGVNIAFTTDAVKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFS 410 (444)
T ss_dssp EECCCCCHHHHHHHHHSSTTCHHHHHHHHHHTTTCEEEECHHHHHHHHHHHHHHHHHSCCCGGGHHHHHHHHHHHHHHHH
T ss_pred eeCCCCCHHHHHHHHHHHHHhHHHHHHHHhcccCceEEECHHHHHHHHHHHHHhccCCccCCchHHHHHHHHHHHHHHhh
Confidence 9999999999999983 1 12 233445688999999874 45666788888888877766655
Q ss_pred hcccccccccccCCCCcHHHHHHHHHhhCCCCCHHHHHHHH
Q 012000 424 LGTNILTVKANQLRPLRYEDFQKAMAVIRPSLNKSKWEELE 464 (473)
Q Consensus 424 ~~~~~~~~~~~~~~~it~~df~~al~~~~ps~~~~~~~~~~ 464 (473)
+... ....-.||.+++...+ .|.+..+++.+|.
T Consensus 411 ~~~~-----~~~~~~i~~~~v~~~l---~~~~~~~dl~~~~ 443 (444)
T 1g41_A 411 ASDM-----NGQTVNIDAAYVADAL---GEVVENEDLSRFI 443 (444)
T ss_dssp GGGC-----TTCEEEECHHHHHHHH---TTTTTCHHHHHHH
T ss_pred cccc-----CCCeEEEeHHHHHHhc---CccccCCChhccc
Confidence 4321 1122458888888765 4567777877763
No 122
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=97.62 E-value=0.00012 Score=72.05 Aligned_cols=35 Identities=31% Similarity=0.495 Sum_probs=31.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
+.|+|+||+|||||+|++.+|..++..++.++.-.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds~q 40 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDSAL 40 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECTTT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccchh
Confidence 47899999999999999999999999888887543
No 123
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.59 E-value=0.00024 Score=73.55 Aligned_cols=56 Identities=23% Similarity=0.425 Sum_probs=35.0
Q ss_pred ccccCCCCCCccccc-ChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 205 AIVDRSPSVKWEDVA-GLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 205 ~iv~~~~~~~~~div-Gl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..+.+++|.+|+++- ++..+...+...+.. ....++|.||||||||+++.+++..+
T Consensus 13 ~~~~~~~p~~~~~Ln~~Q~~av~~~~~~i~~-------------~~~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 13 GLVPRGSHMTFDDLTEGQKNAFNIVMKAIKE-------------KKHHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp --------CCSSCCCHHHHHHHHHHHHHHHS-------------SSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCccccCCCccccCCHHHHHHHHHHHHHHhc-------------CCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 345678899999875 455555555444421 12379999999999999999998876
No 124
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.57 E-value=4e-05 Score=69.98 Aligned_cols=34 Identities=32% Similarity=0.464 Sum_probs=29.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+...|+|.|||||||||+++++|..++.+++..+
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~d 57 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDLD 57 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEHH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcch
Confidence 3467999999999999999999999999887543
No 125
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.49 E-value=0.00016 Score=86.17 Aligned_cols=97 Identities=18% Similarity=0.274 Sum_probs=58.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc----hhhhh---------------h----hh----hh
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT----SKWVG---------------E----GE----KL 296 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~----~~~~g---------------~----~~----~~ 296 (473)
.++.+++||||||||||+||.+++.++ |.....++..... ....| . .. ..
T Consensus 1425 ~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~~ 1504 (2050)
T 3cmu_A 1425 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSG 1504 (2050)
T ss_dssp ETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHT
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhcC
Confidence 456889999999999999999998775 4455555554332 11111 1 11 11
Q ss_pred hcceeeeecccccccc-------Ccch--HHHHHHHHHHHHhcCcCCCCCCcEEEEee
Q 012000 297 VRTLFMIDSIMSTRMA-------NEND--ASRRLKSEFLIQFDGVTSNPNDLVIVMGA 345 (473)
Q Consensus 297 ~~~if~IDei~~~~~~-------~~~~--~~~~~~~~ll~~ldg~~~~~~~~v~vI~t 345 (473)
-..++.||++...... ++.. ...+++.++|..|.+.....+ ++||++
T Consensus 1505 ~~~lVVIDsi~al~p~~~~~g~~~~~~~~~~~R~lsqlL~~L~~~~~~~~--v~VI~t 1560 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSN--TLLIFI 1560 (2050)
T ss_dssp CCSEEEESCGGGCCCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHTTT--CEEEEE
T ss_pred CCCEEEEcChhHhcccccccccccccccchHHHHHHHHHHHHHHHHHhCC--cEEEEE
Confidence 2467789999643321 1111 245677888887777654333 555544
No 126
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.49 E-value=6.6e-05 Score=66.20 Aligned_cols=31 Identities=23% Similarity=0.205 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
-|+|.||||+||||+++.++..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5889999999999999999999998887544
No 127
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.48 E-value=6.4e-05 Score=67.23 Aligned_cols=32 Identities=47% Similarity=0.688 Sum_probs=28.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
...|+|+|+||+||||+++.++..++..++..
T Consensus 11 ~~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 11 LPNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 45699999999999999999999999888754
No 128
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=97.47 E-value=0.0021 Score=68.41 Aligned_cols=50 Identities=16% Similarity=0.128 Sum_probs=39.3
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
|.....++|.+...+.|.+.+... ....+.++|+||+|+|||+||..++.
T Consensus 120 P~~~~~~vGR~~~l~~L~~~L~~~----------~~~~~~v~I~G~~GiGKTtLa~~~~~ 169 (591)
T 1z6t_A 120 PQRPVVFVTRKKLVNAIQQKLSKL----------KGEPGWVTIHGMAGCGKSVLAAEAVR 169 (591)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHTTS----------TTSCEEEEEECCTTSSHHHHHHHHHC
T ss_pred CCCCCeecccHHHHHHHHHHHhcc----------cCCCceEEEEcCCCCCHHHHHHHHHh
Confidence 445567999999999999887421 12245789999999999999999864
No 129
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.46 E-value=6.5e-05 Score=67.40 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|+|.|+|||||||+|+.|+..++.+++..+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~D 34 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDTD 34 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeCc
Confidence 5899999999999999999999999887543
No 130
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.45 E-value=6.1e-05 Score=67.11 Aligned_cols=30 Identities=30% Similarity=0.588 Sum_probs=27.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.|||||||||+++.||..++.+++..
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d~ 35 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLDS 35 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 589999999999999999999999887753
No 131
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.43 E-value=0.00011 Score=66.13 Aligned_cols=32 Identities=25% Similarity=0.435 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|+||+||||+++.++..++..++..
T Consensus 5 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~i~~ 36 (193)
T 2rhm_A 5 PALIIVTGHPATGKTTLSQALATGLRLPLLSK 36 (193)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcCCeEecH
Confidence 45789999999999999999999999887653
No 132
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.40 E-value=8e-05 Score=67.11 Aligned_cols=33 Identities=33% Similarity=0.585 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH-cCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE-SQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e-~~~~~~~v~ 281 (473)
+..|+|+|+|||||||+++.+|.. ++.+++.++
T Consensus 10 ~~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~d 43 (184)
T 1y63_A 10 GINILITGTPGTGKTSMAEMIAAELDGFQHLEVG 43 (184)
T ss_dssp SCEEEEECSTTSSHHHHHHHHHHHSTTEEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcCCCEEeeHH
Confidence 356999999999999999999999 787776543
No 133
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.40 E-value=8.6e-05 Score=65.59 Aligned_cols=31 Identities=26% Similarity=0.423 Sum_probs=28.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
..|+|.|+|||||||+++.+|..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 5799999999999999999999999998864
No 134
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.39 E-value=0.00013 Score=64.62 Aligned_cols=30 Identities=30% Similarity=0.742 Sum_probs=26.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
..|.|.|||||||||+++.+|..++..++.
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~id 34 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYD 34 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEe
Confidence 469999999999999999999999876654
No 135
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.39 E-value=0.00022 Score=69.22 Aligned_cols=38 Identities=32% Similarity=0.528 Sum_probs=30.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
.+..++|.||||+||||+++.++.+++..++.+++..+
T Consensus 32 ~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~D~~ 69 (287)
T 1gvn_B 32 SPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDNDTF 69 (287)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECTHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEechHh
Confidence 35678999999999999999999998655666775443
No 136
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=0.00011 Score=66.86 Aligned_cols=32 Identities=31% Similarity=0.462 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|||||||||+|+.++..++.+++.+
T Consensus 20 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 20 HMRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 45689999999999999999999999887654
No 137
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.35 E-value=0.0001 Score=66.22 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 34 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVEKYGYTHLSA 34 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 45689999999999999999999999877643
No 138
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=97.34 E-value=0.0004 Score=68.66 Aligned_cols=35 Identities=26% Similarity=0.385 Sum_probs=31.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
+-|+|.||+|+|||+|+..||+.++..+++.+.-.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds~q 75 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDKMQ 75 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCSST
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccccc
Confidence 46899999999999999999999999888877553
No 139
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.34 E-value=0.00011 Score=66.21 Aligned_cols=33 Identities=18% Similarity=0.367 Sum_probs=28.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+.-|+|.|||||||||+++.+|..++.+++..+
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~d 41 (196)
T 2c95_A 9 TNIIFVVGGPGSGKGTQCEKIVQKYGYTHLSTG 41 (196)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcHH
Confidence 457999999999999999999999998877543
No 140
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.33 E-value=0.00012 Score=67.79 Aligned_cols=32 Identities=28% Similarity=0.507 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+..|+|.||||+||||+++.||..++.+++..
T Consensus 4 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 4 SIRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 45799999999999999999999999877654
No 141
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.33 E-value=0.0001 Score=64.76 Aligned_cols=29 Identities=34% Similarity=0.534 Sum_probs=26.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
-|+|.||||+||||+++.+ ..++.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 5889999999999999999 8889887764
No 142
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.30 E-value=0.00012 Score=64.76 Aligned_cols=31 Identities=19% Similarity=0.402 Sum_probs=27.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
..|+|.|+|||||||+++.++..++.+++..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARALGYEFVDT 33 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCcEEcc
Confidence 3589999999999999999999999887753
No 143
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.28 E-value=0.00018 Score=65.59 Aligned_cols=31 Identities=23% Similarity=0.515 Sum_probs=27.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
+.-|+|.||||+||||+++.|+..++..++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 4579999999999999999999999877765
No 144
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.26 E-value=0.00014 Score=66.96 Aligned_cols=30 Identities=23% Similarity=0.450 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.||||+||||+|+.++.+++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 388999999999999999999999877754
No 145
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.26 E-value=0.00028 Score=66.98 Aligned_cols=38 Identities=26% Similarity=0.372 Sum_probs=31.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
.+..++|.||||+||||+++.++..++..++.++...+
T Consensus 31 ~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 31 QPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp SCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 35679999999999999999999999866666666544
No 146
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.24 E-value=0.00015 Score=65.51 Aligned_cols=32 Identities=19% Similarity=0.403 Sum_probs=27.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|+||+||||+++.++..++..++..
T Consensus 12 ~~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 43 (199)
T 2bwj_A 12 CKIIFIIGGPGSGKGTQCEKLVEKYGFTHLST 43 (199)
T ss_dssp SCEEEEEECTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 35699999999999999999999999776654
No 147
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.24 E-value=0.00017 Score=64.86 Aligned_cols=37 Identities=32% Similarity=0.465 Sum_probs=30.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
..-+.|.||||+||||+++.|+...+...+.++..++
T Consensus 9 g~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d~~ 45 (191)
T 1zp6_A 9 GNILLLSGHPGSGKSTIAEALANLPGVPKVHFHSDDL 45 (191)
T ss_dssp TEEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTTHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHhccCCCeEEEcccch
Confidence 4568899999999999999999987777777766544
No 148
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.24 E-value=0.00016 Score=64.24 Aligned_cols=29 Identities=24% Similarity=0.378 Sum_probs=24.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH-HcCCcEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS-ESQATFF 278 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~-e~~~~~~ 278 (473)
.-|+|.||||+||||+|+.++. .++..++
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~~i 32 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcEEe
Confidence 4689999999999999999998 4554444
No 149
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.23 E-value=0.00016 Score=66.65 Aligned_cols=30 Identities=23% Similarity=0.482 Sum_probs=26.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.||||+||||+|+.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 378999999999999999999999877754
No 150
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.23 E-value=0.00018 Score=64.40 Aligned_cols=30 Identities=30% Similarity=0.549 Sum_probs=26.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
..|+|.|||||||||+++.+++.++.+++.
T Consensus 5 ~~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 5 QAVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 458999999999999999999999876654
No 151
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.22 E-value=0.00016 Score=67.30 Aligned_cols=32 Identities=16% Similarity=0.400 Sum_probs=28.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|||||||||+++.||..++..++.+
T Consensus 7 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 7 LLRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 35699999999999999999999999877654
No 152
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=97.22 E-value=0.00069 Score=68.50 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=29.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
++-|+|.||+|+|||+|+..+|..++..+++.+.
T Consensus 2 ~~~i~i~GptgsGKttla~~La~~~~~~iis~Ds 35 (409)
T 3eph_A 2 KKVIVIAGTTGVGKSQLSIQLAQKFNGEVINSDS 35 (409)
T ss_dssp CEEEEEEECSSSSHHHHHHHHHHHHTEEEEECCT
T ss_pred CcEEEEECcchhhHHHHHHHHHHHCCCeEeecCc
Confidence 4568899999999999999999999987776654
No 153
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.22 E-value=0.00017 Score=64.76 Aligned_cols=32 Identities=16% Similarity=0.340 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|+|.|+|||||||+++.++..++.+++..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 35689999999999999999999999777654
No 154
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.22 E-value=0.00014 Score=65.15 Aligned_cols=30 Identities=17% Similarity=0.313 Sum_probs=26.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC-----CcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ-----ATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~-----~~~~~ 279 (473)
.-|+|.||||+||||+++.++..++ .+++.
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~i~ 38 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNYKMVS 38 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCcceEEEe
Confidence 4689999999999999999999887 55553
No 155
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.22 E-value=0.00019 Score=67.84 Aligned_cols=33 Identities=18% Similarity=0.390 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
++..|+|.||||+||||+|+.|++.++..++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 456799999999999999999999998777654
No 156
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.21 E-value=0.00018 Score=63.30 Aligned_cols=30 Identities=20% Similarity=0.407 Sum_probs=27.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.|+||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 488999999999999999999999887753
No 157
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.20 E-value=0.00021 Score=66.90 Aligned_cols=32 Identities=28% Similarity=0.431 Sum_probs=28.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+..|+|.|+|||||||+++.||..++..++..
T Consensus 16 ~~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 16 GVRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 35799999999999999999999999877654
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.20 E-value=0.00017 Score=64.40 Aligned_cols=30 Identities=27% Similarity=0.379 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
+.-|+|.|+|||||||+++.++..++.+++
T Consensus 5 ~~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 5 SPIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CCEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 356899999999999999999999998877
No 159
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.20 E-value=0.00023 Score=66.23 Aligned_cols=38 Identities=21% Similarity=0.406 Sum_probs=30.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccch
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLTS 287 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~~ 287 (473)
.++-|+|.||||+||+|.|+.||+.++.+.+ +..+++.
T Consensus 28 k~kiI~llGpPGsGKgTqa~~L~~~~g~~hI--stGdllR 65 (217)
T 3umf_A 28 KAKVIFVLGGPGSGKGTQCEKLVQKFHFNHL--SSGDLLR 65 (217)
T ss_dssp SCEEEEEECCTTCCHHHHHHHHHHHHCCEEE--CHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHCCceE--cHHHHHH
Confidence 3567889999999999999999999987655 4455543
No 160
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=97.20 E-value=0.00084 Score=65.49 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=31.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCcc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASSL 285 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l 285 (473)
++-++|.||+|+|||+||..+|..++..+++.+.-.+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~qv 46 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKILPVELISVDSALI 46 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHSCEEEEECCTTTT
T ss_pred CcEEEEECCCccCHHHHHHHHHHhCCCcEEecccccc
Confidence 4568899999999999999999999988887765443
No 161
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.20 E-value=0.00032 Score=62.21 Aligned_cols=31 Identities=32% Similarity=0.548 Sum_probs=26.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
...++|.||||+||||+++.++..+|..++.
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i~ 38 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFLD 38 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEEe
Confidence 3568899999999999999999998876654
No 162
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.20 E-value=0.00022 Score=64.99 Aligned_cols=33 Identities=15% Similarity=0.364 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+.-|+|.|+|||||||+++.+++.++..++..+
T Consensus 15 ~~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~d 47 (203)
T 1ukz_A 15 VSVIFVLGGPGAGKGTQCEKLVKDYSFVHLSAG 47 (203)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHSSCEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCceEEeHH
Confidence 356899999999999999999999998776543
No 163
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.19 E-value=0.0049 Score=57.35 Aligned_cols=155 Identities=18% Similarity=0.209 Sum_probs=80.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc--------cchh----------hh----h--hhh---hhhcc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS--------LTSK----------WV----G--EGE---KLVRT 299 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~--------l~~~----------~~----g--~~~---~~~~~ 299 (473)
..|++.|+||+||||++-.+|..+ |..++.++... +... +. . ... ..-..
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L~~~pd 86 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALLKAAPS 86 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHHHHCCS
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHHhcCCC
Confidence 458999999999999999988765 55555444321 1110 00 0 001 12246
Q ss_pred eeeeecccccccc-CcchHHHHHHHHHHHHhcCcCCCCCCcEEEEeecCC--C----------------CCCCHHHhccc
Q 012000 300 LFMIDSIMSTRMA-NENDASRRLKSEFLIQFDGVTSNPNDLVIVMGATNK--P----------------QELDDAVLRRL 360 (473)
Q Consensus 300 if~IDei~~~~~~-~~~~~~~~~~~~ll~~ldg~~~~~~~~v~vI~tTn~--~----------------~~Ld~al~rRf 360 (473)
++.||++...... ......-..+..+ +. ..+=|++|+|. . +.++..+..+.
T Consensus 87 lvIVDElG~~~~~~~r~~~~~qDV~~~---l~-------sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~~~a 156 (228)
T 2r8r_A 87 LVLVDELAHTNAPGSRHTKRWQDIQEL---LA-------AGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVLQEA 156 (228)
T ss_dssp EEEESCTTCBCCTTCSSSBHHHHHHHH---HH-------TTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHHHTC
T ss_pred EEEEeCCCCCCcccchhHHHHHHHHHH---Hc-------CCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHHhhC
Confidence 7789999754222 1111111111221 11 11335666652 1 34566777777
Q ss_pred ccccccCCCcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Q 012000 361 VKRIYVPLPDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSDLQALCEEAAMMPIR 422 (473)
Q Consensus 361 ~~~i~~~~P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~dL~~l~~~A~~~a~~ 422 (473)
+.+..++.|..+-+.. +....+-.++..-..+. .-|+..-|.+|.+-|......
T Consensus 157 ~~v~lvD~~p~~l~~r-----l~~g~vy~~~~~~~a~~---~~f~~~nl~~lrelal~~~a~ 210 (228)
T 2r8r_A 157 FDLVLIDLPPRELLER-----LRDGKVYVPEQARAAID---AFFTQTNLTALREMAMQTAAA 210 (228)
T ss_dssp SEEEEBCCCHHHHHHH-----HHTTCCCCTTCCHHHHH---HHCCHHHHHHHHHHHHHHHHT
T ss_pred CeEEEecCCHHHHHHH-----HHCCCccChhHHHHHHH---hhhchhhHHHHHHHHHHHHHH
Confidence 7777888887774433 22222222222222222 226777787777766555433
No 164
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.16 E-value=0.00026 Score=65.23 Aligned_cols=34 Identities=35% Similarity=0.547 Sum_probs=28.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCccc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSASSLT 286 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~l~ 286 (473)
-|+|.||||+||+|.|+.||+.++.+.+ +..+++
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~i--stGdll 35 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHI--STGDIL 35 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEE--EHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEE--cHHHHH
Confidence 3789999999999999999999987765 444544
No 165
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.14 E-value=0.00035 Score=63.70 Aligned_cols=30 Identities=37% Similarity=0.616 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
+.-+.|.||+|+||||+++.|+..+|..++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~~~i 58 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGLEFA 58 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCCeEE
Confidence 456889999999999999999999976554
No 166
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.13 E-value=0.0002 Score=66.28 Aligned_cols=31 Identities=26% Similarity=0.500 Sum_probs=27.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
..|+|.|+|||||||+++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4689999999999999999999999877754
No 167
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.12 E-value=0.00017 Score=66.86 Aligned_cols=31 Identities=16% Similarity=0.344 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
+..|+|.||||+||||+++.||..++..++.
T Consensus 5 ~~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 5 PLKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp SCCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 3569999999999999999999999976553
No 168
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=97.12 E-value=0.00016 Score=71.97 Aligned_cols=53 Identities=15% Similarity=0.313 Sum_probs=37.0
Q ss_pred cChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 219 vGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
+..+.+.+.+...+...+.. .....++|+||||+|||++++++|..++.+|+.
T Consensus 2 ~~~~~L~~~il~~l~~~i~~--------g~~~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 2 VDTHKLADDVLQLLDNRIED--------NYRVCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp CCHHHHHHHHHHHHHHTTTT--------CSCEEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhcc--------CCeeEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 45556666665555422111 112469999999999999999999999888744
No 169
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.08 E-value=0.0024 Score=73.52 Aligned_cols=168 Identities=13% Similarity=0.118 Sum_probs=93.9
Q ss_pred CCCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc-------CCcEEEEecC
Q 012000 211 PSVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES-------QATFFNVSAS 283 (473)
Q Consensus 211 ~~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~-------~~~~~~v~~~ 283 (473)
.|.....++|.++..+.|.+.+... ....+-+.|+|++|+|||+||+.+++.. ...++.++.+
T Consensus 119 ~p~~~~~~vgR~~~~~~l~~~l~~~----------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~ 188 (1249)
T 3sfz_A 119 VPQRPVIFVTRKKLVHAIQQKLWKL----------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIG 188 (1249)
T ss_dssp CCCCCSSCCCCHHHHHHHHHHHHTT----------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECC
T ss_pred CCCCCceeccHHHHHHHHHHHHhhc----------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEEC
Confidence 4455667999999999999887421 1224568899999999999999987652 2223344433
Q ss_pred ccch-----hh------hh--------------hhhh---------hhcceeeeeccccccccCcchHHHHHHHHHHHHh
Q 012000 284 SLTS-----KW------VG--------------EGEK---------LVRTLFMIDSIMSTRMANENDASRRLKSEFLIQF 329 (473)
Q Consensus 284 ~l~~-----~~------~g--------------~~~~---------~~~~if~IDei~~~~~~~~~~~~~~~~~~ll~~l 329 (473)
.... .. ++ .... ..+-++.+|++... ..+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------------~~~ 251 (1249)
T 3sfz_A 189 KQDKSGLLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------------WVL 251 (1249)
T ss_dssp SCCHHHHHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------------HHH
T ss_pred CcCchHHHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------------HHH
Confidence 2100 00 00 0000 11345567776311 012
Q ss_pred cCcCCCCCCcEEEEeecCCCCCCCHHHhcccccccccCC-CcHHHHHHHHHHHhccCCCCCChhhHHHHHHHcCCCCHHH
Q 012000 330 DGVTSNPNDLVIVMGATNKPQELDDAVLRRLVKRIYVPL-PDENVRRLLLKHKLKGQAFSLPGGDLERLVRETEGYSGSD 408 (473)
Q Consensus 330 dg~~~~~~~~v~vI~tTn~~~~Ld~al~rRf~~~i~~~~-P~~~~r~~il~~~l~~~~~~l~~~~l~~La~~t~g~s~~d 408 (473)
..+ ..+..||.||..+.-... . ......+.++. .+.++-.++|..+.....-. ......+|++.+.|. +-.
T Consensus 252 ~~~----~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~~~~~~~-~~~~~~~i~~~~~gl-PLa 323 (1249)
T 3sfz_A 252 KAF----DNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFVNMKKED-LPAEAHSIIKECKGS-PLV 323 (1249)
T ss_dssp TTT----CSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHHTSCSTT-CCTHHHHHHHHTTTC-HHH
T ss_pred Hhh----cCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhhCCChhh-CcHHHHHHHHHhCCC-HHH
Confidence 222 112356667765432211 0 11234466664 77888888888776443222 234678899999985 444
Q ss_pred HHHHH
Q 012000 409 LQALC 413 (473)
Q Consensus 409 L~~l~ 413 (473)
|..+.
T Consensus 324 l~~~~ 328 (1249)
T 3sfz_A 324 VSLIG 328 (1249)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44433
No 170
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=97.08 E-value=0.00095 Score=68.21 Aligned_cols=32 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.+.-|+|+|+||+||||+|+.++..++..++.
T Consensus 257 ~~~lIil~G~pGSGKSTla~~L~~~~~~~~i~ 288 (416)
T 3zvl_A 257 NPEVVVAVGFPGAGKSTFIQEHLVSAGYVHVN 288 (416)
T ss_dssp SCCEEEEESCTTSSHHHHHHHHTGGGTCEECC
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHhcCcEEEc
Confidence 35678899999999999999999988765543
No 171
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=97.06 E-value=0.00027 Score=65.12 Aligned_cols=30 Identities=20% Similarity=0.325 Sum_probs=26.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.|+|.||||+||||+++.++..++..++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 389999999999999999999999877654
No 172
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=97.03 E-value=0.00042 Score=65.32 Aligned_cols=31 Identities=23% Similarity=0.495 Sum_probs=27.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
+.-+.|.||||+||||+++.|++.++...+.
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~ 57 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHLS 57 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 4679999999999999999999999876543
No 173
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=97.02 E-value=0.0012 Score=64.58 Aligned_cols=34 Identities=18% Similarity=0.250 Sum_probs=29.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
+-|+|.||+|+|||+|+..+|..++..+++.+.-
T Consensus 4 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds~ 37 (322)
T 3exa_A 4 KLVAIVGPTAVGKTKTSVMLAKRLNGEVISGDSM 37 (322)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHTTTEEEEECCGG
T ss_pred cEEEEECCCcCCHHHHHHHHHHhCccceeecCcc
Confidence 4578999999999999999999998877766644
No 174
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=97.01 E-value=0.00053 Score=61.51 Aligned_cols=31 Identities=23% Similarity=0.045 Sum_probs=27.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
-|.|.|+|||||||+++.++..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88888765
No 175
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=96.99 E-value=0.00064 Score=60.56 Aligned_cols=35 Identities=20% Similarity=0.290 Sum_probs=30.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..-|.|.|++|+||||+++.++..+ |.+++.++..
T Consensus 5 g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~~ 42 (179)
T 2pez_A 5 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDGD 42 (179)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECCh
Confidence 4568899999999999999999987 8888877643
No 176
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.98 E-value=0.0005 Score=65.54 Aligned_cols=36 Identities=22% Similarity=0.339 Sum_probs=29.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---cCCcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e---~~~~~~~v~~~~ 284 (473)
+.-|+|.|+||+||||+|+.++.. .|..++.++...
T Consensus 4 ~~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~D~ 42 (260)
T 3a4m_A 4 IMLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGSDL 42 (260)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECTHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECchH
Confidence 346899999999999999999998 677777555433
No 177
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.96 E-value=0.00062 Score=61.75 Aligned_cols=33 Identities=15% Similarity=0.128 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES-QATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v~ 281 (473)
+.-|.|.|+||+||||+++.++..+ +.+++.+.
T Consensus 4 ~~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 4 GALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 4568999999999999999999998 57777664
No 178
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=96.95 E-value=0.015 Score=61.44 Aligned_cols=44 Identities=20% Similarity=0.137 Sum_probs=35.0
Q ss_pred cChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHH
Q 012000 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 219 vGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
+|.+..++.|.+++... .....+.+.|+|++|+|||+||+.+++
T Consensus 131 ~GR~~~~~~l~~~L~~~---------~~~~~~vv~I~G~gGvGKTtLA~~v~~ 174 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM---------CDLDSFFLFLHGRAGSGKSVIASQALS 174 (549)
T ss_dssp CCCHHHHHHHHHHHHHH---------TTSSSEEEEEECSTTSSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc---------cCCCceEEEEEcCCCCCHHHHHHHHHH
Confidence 49999999999887421 112246788999999999999999997
No 179
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.95 E-value=0.00053 Score=63.71 Aligned_cols=30 Identities=27% Similarity=0.530 Sum_probs=26.1
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
-|+|.||||+||||+++.++..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 378999999999999999999998766543
No 180
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.95 E-value=0.00051 Score=62.17 Aligned_cols=28 Identities=21% Similarity=0.522 Sum_probs=25.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.|.|.|+|||||||+++.+++.++..++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4789999999999999999999998665
No 181
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=96.93 E-value=0.0022 Score=57.86 Aligned_cols=31 Identities=16% Similarity=0.083 Sum_probs=22.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v 280 (473)
.-++++||||+|||+++..++..+ +..++.+
T Consensus 4 ~i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 4 KLTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 357899999999999997766543 4444433
No 182
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.92 E-value=0.00033 Score=62.73 Aligned_cols=24 Identities=25% Similarity=0.270 Sum_probs=22.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
-|+|.||||+||||+++.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999999876
No 183
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.92 E-value=0.00065 Score=62.79 Aligned_cols=30 Identities=33% Similarity=0.465 Sum_probs=26.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
..|.|.||+||||||+++.++..++.+++.
T Consensus 6 ~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d 35 (227)
T 1cke_A 6 PVITIDGPSGAGKGTLCKAMAEALQWHLLD 35 (227)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCccc
Confidence 458899999999999999999999987764
No 184
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.90 E-value=0.00067 Score=61.77 Aligned_cols=35 Identities=20% Similarity=0.232 Sum_probs=27.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++.-+.|.||+||||||++++++..+ |...+.++.
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 34668899999999999999999988 444334443
No 185
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=96.88 E-value=0.0033 Score=66.87 Aligned_cols=32 Identities=34% Similarity=0.379 Sum_probs=25.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
..++|.||||||||+++.+++..+ +..++.+.
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~A 239 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCA 239 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEec
Confidence 578999999999999999998754 55665553
No 186
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.87 E-value=0.00048 Score=62.69 Aligned_cols=30 Identities=23% Similarity=0.277 Sum_probs=26.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
-|.|.||+||||||+++.++. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 488999999999999999999 887777643
No 187
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.87 E-value=0.0008 Score=60.57 Aligned_cols=31 Identities=16% Similarity=0.147 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
|.|.|++||||||+++.+++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888876543
No 188
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.83 E-value=0.00086 Score=62.96 Aligned_cols=32 Identities=22% Similarity=0.454 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+..+.|.|||||||||+++.||..++..++..
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~ 40 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDT 40 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccC
Confidence 35689999999999999999999999877653
No 189
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.78 E-value=0.00095 Score=63.37 Aligned_cols=31 Identities=39% Similarity=0.593 Sum_probs=28.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
..|.|.||+|+||||+++.+|..++.+|+..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 4699999999999999999999999988764
No 190
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=96.77 E-value=1.5e-05 Score=82.73 Aligned_cols=81 Identities=14% Similarity=0.253 Sum_probs=47.3
Q ss_pred HHHHhcCcCCCCCCcEEEEeecCCCCCCCHHHhc--cccc--ccccCCCc--HHHHHHHHHHHhccCCCCCChhhHHHHH
Q 012000 325 FLIQFDGVTSNPNDLVIVMGATNKPQELDDAVLR--RLVK--RIYVPLPD--ENVRRLLLKHKLKGQAFSLPGGDLERLV 398 (473)
Q Consensus 325 ll~~ldg~~~~~~~~v~vI~tTn~~~~Ld~al~r--Rf~~--~i~~~~P~--~~~r~~il~~~l~~~~~~l~~~~l~~La 398 (473)
++..++......++.++|++|||+++.+|++++| ||++ .+++|.|+ ..+|.+|++.+. ..+++.++
T Consensus 176 ll~~l~~~~~~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~--------~~dl~~~a 247 (456)
T 2c9o_A 176 IFESLQKERVEAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVT--------LHDLDVAN 247 (456)
T ss_dssp HHHHHHHTTCCTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEE--------HHHHHHTC
T ss_pred HHHHHhhccCCCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHH--------HHHHHHHH
Confidence 5556653322345557777999999999999987 9998 66778885 467777766443 34799999
Q ss_pred HHcCCCCHHHHHHHHHH
Q 012000 399 RETEGYSGSDLQALCEE 415 (473)
Q Consensus 399 ~~t~g~s~~dL~~l~~~ 415 (473)
..++| |+||.++|..
T Consensus 248 ~~t~g--gadl~~l~~~ 262 (456)
T 2c9o_A 248 ARPQG--GQDILSMMGQ 262 (456)
T ss_dssp -----------------
T ss_pred HhCCC--hhHHHHHHhh
Confidence 99999 9999999954
No 191
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.77 E-value=0.00072 Score=61.52 Aligned_cols=31 Identities=23% Similarity=0.315 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
-|.|+|++||||||+++.++..+|.+++..+
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~D 44 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNVD 44 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEECc
Confidence 4779999999999999999999898887643
No 192
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.77 E-value=0.00095 Score=60.61 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
.|.|.|++||||||+++.+|..++.+++..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~d 34 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSSG 34 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceeccc
Confidence 5889999999999999999999998888643
No 193
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.75 E-value=0.00087 Score=60.97 Aligned_cols=28 Identities=18% Similarity=0.128 Sum_probs=24.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
+.-|+|.|+||+||||+++.++..++..
T Consensus 4 ~~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 4 GVLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 3468999999999999999999998763
No 194
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00085 Score=61.17 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=25.3
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
-+.|.||+||||||+++.++. +|.+++..
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id~ 32 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVDA 32 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccch
Confidence 478999999999999999998 88877743
No 195
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.72 E-value=0.00042 Score=63.33 Aligned_cols=29 Identities=14% Similarity=0.143 Sum_probs=24.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
+.-|+|.|+|||||||+++.++..++...
T Consensus 10 ~~~I~l~G~~GsGKST~~~~L~~~l~~~~ 38 (212)
T 2wwf_A 10 GKFIVFEGLDRSGKSTQSKLLVEYLKNNN 38 (212)
T ss_dssp SCEEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 45689999999999999999999876443
No 196
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.71 E-value=0.0009 Score=60.53 Aligned_cols=32 Identities=19% Similarity=0.199 Sum_probs=27.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
+..|.|.|++||||||+++.++.. |.+++..+
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-g~~~id~d 39 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-GYPVLDLD 39 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-TCCEEEHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-CCEEEccc
Confidence 456899999999999999999998 87777543
No 197
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=96.68 E-value=0.0041 Score=62.02 Aligned_cols=37 Identities=27% Similarity=0.307 Sum_probs=29.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
+..-++|+||||+|||+|+..++..+ +..++.++...
T Consensus 60 ~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~ 99 (356)
T 3hr8_A 60 RGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEH 99 (356)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccc
Confidence 34568999999999999999998764 56666666554
No 198
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.67 E-value=0.00051 Score=62.78 Aligned_cols=27 Identities=19% Similarity=0.193 Sum_probs=23.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
+.-|+|.|+|||||||+++.++..++.
T Consensus 9 ~~~I~l~G~~GsGKsT~~~~L~~~l~~ 35 (215)
T 1nn5_A 9 GALIVLEGVDRAGKSTQSRKLVEALCA 35 (215)
T ss_dssp CCEEEEEESTTSSHHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 456899999999999999999998653
No 199
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.62 E-value=0.0017 Score=61.43 Aligned_cols=31 Identities=32% Similarity=0.449 Sum_probs=27.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
...|.|.||+||||||+++.||..+|..++.
T Consensus 27 g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d 57 (252)
T 4e22_A 27 APVITVDGPSGAGKGTLCKALAESLNWRLLD 57 (252)
T ss_dssp SCEEEEECCTTSSHHHHHHHHHHHTTCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcCCCcCC
Confidence 3468899999999999999999999987764
No 200
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.56 E-value=0.0013 Score=59.97 Aligned_cols=27 Identities=41% Similarity=0.503 Sum_probs=24.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
++.-++|.||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 356799999999999999999999885
No 201
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=96.56 E-value=0.0016 Score=58.35 Aligned_cols=28 Identities=29% Similarity=0.484 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.+.|.||+|+|||||++.++..++..+.
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~~~ 29 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKRAI 29 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcCC
Confidence 4789999999999999999998765443
No 202
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.51 E-value=0.0045 Score=57.03 Aligned_cols=31 Identities=29% Similarity=0.379 Sum_probs=27.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
-.|-|+|..||||||+++.++. +|.+++..+
T Consensus 10 ~~iglTGgigsGKStv~~~l~~-~g~~vidaD 40 (210)
T 4i1u_A 10 YAIGLTGGIGSGKTTVADLFAA-RGASLVDTD 40 (210)
T ss_dssp CEEEEECCTTSCHHHHHHHHHH-TTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-CCCcEEECc
Confidence 4688999999999999999998 899888654
No 203
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=96.50 E-value=0.0031 Score=57.60 Aligned_cols=38 Identities=26% Similarity=0.277 Sum_probs=30.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~~ 284 (473)
.+..-++|+||||+|||+|++.+|...+..++.++...
T Consensus 18 ~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 18 APGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp CTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred cCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 34456899999999999999999986566777776544
No 204
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.50 E-value=0.0022 Score=59.92 Aligned_cols=32 Identities=25% Similarity=0.461 Sum_probs=28.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+..|.|.|++||||||+++.++..+|.+++..
T Consensus 16 ~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~ 47 (236)
T 1q3t_A 16 TIQIAIDGPASSGKSTVAKIIAKDFGFTYLDT 47 (236)
T ss_dssp CCEEEEECSSCSSHHHHHHHHHHHHCCEEEEH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHcCCceecC
Confidence 45688999999999999999999999877753
No 205
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=96.50 E-value=0.009 Score=59.82 Aligned_cols=36 Identities=31% Similarity=0.423 Sum_probs=28.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+..-++|+||||+|||+||..+|..+ +.+++.++..
T Consensus 73 ~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E 111 (366)
T 1xp8_A 73 RGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAE 111 (366)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECC
Confidence 34568999999999999999988764 5566666654
No 206
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.50 E-value=0.0017 Score=58.20 Aligned_cols=25 Identities=28% Similarity=0.480 Sum_probs=21.9
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
-++|.||+|+||||+++.++...+.
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4789999999999999999986654
No 207
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.49 E-value=0.0021 Score=59.09 Aligned_cols=32 Identities=34% Similarity=0.506 Sum_probs=28.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~ 281 (473)
..|.|.|++|||||++++.++..+|.+++..+
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~d 35 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDTG 35 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecCC
Confidence 46899999999999999999999998877643
No 208
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.47 E-value=0.0011 Score=64.24 Aligned_cols=29 Identities=24% Similarity=0.387 Sum_probs=24.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc-CCcEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES-QATFF 278 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~-~~~~~ 278 (473)
.-|+|.|+||+||||+++.++..+ +..++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 468999999999999999999974 55444
No 209
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.46 E-value=0.0023 Score=58.79 Aligned_cols=30 Identities=27% Similarity=0.303 Sum_probs=26.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.-|.|.|++||||||+++.++. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 4688999999999999999998 88777654
No 210
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.44 E-value=0.0019 Score=61.11 Aligned_cols=28 Identities=11% Similarity=0.071 Sum_probs=25.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
+.-|.|.|+|||||||+|+.|+..++.+
T Consensus 22 ~~iI~I~G~~GSGKST~a~~L~~~lg~~ 49 (252)
T 1uj2_A 22 PFLIGVSGGTASGKSSVCAKIVQLLGQN 49 (252)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHTTGG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhhhh
Confidence 3468899999999999999999999876
No 211
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.43 E-value=0.0014 Score=59.83 Aligned_cols=32 Identities=22% Similarity=0.228 Sum_probs=25.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc-CCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES-QATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~-~~~~~~v 280 (473)
+.-+.|.||||+||||+++.++..+ +..++..
T Consensus 21 ~~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i~~ 53 (207)
T 2qt1_A 21 TFIIGISGVTNSGKTTLAKNLQKHLPNCSVISQ 53 (207)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTTSTTEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhcCCcEEEeC
Confidence 3457899999999999999999987 5555543
No 212
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.39 E-value=0.0019 Score=64.01 Aligned_cols=34 Identities=24% Similarity=0.336 Sum_probs=29.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
.-|+|.||+|+|||+||+.||..++..++..+.-
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~~~iis~Ds~ 41 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFNGEIISGDSM 41 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTEEEEECCSS
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcCCceeccccc
Confidence 4688999999999999999999999777666543
No 213
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.39 E-value=0.0018 Score=62.54 Aligned_cols=31 Identities=26% Similarity=0.269 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
+.-|.|.|+|||||||+|+.++ .+|.+++..
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred CEEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 3568999999999999999999 688777654
No 214
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.38 E-value=0.0022 Score=57.44 Aligned_cols=34 Identities=29% Similarity=0.289 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEe
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVS 281 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~ 281 (473)
++.-|+|.|+||+||||+++.++..++ .++..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 346688999999999999999998874 3444444
No 215
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.35 E-value=0.011 Score=55.37 Aligned_cols=39 Identities=28% Similarity=0.415 Sum_probs=30.6
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC-ccchhh
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNVSAS-SLTSKW 289 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~-~l~~~~ 289 (473)
.++++||+|+|||.++.+++...+..++.+.+. .+...|
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~ 149 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQW 149 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHH
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHH
Confidence 499999999999999999998887777666554 444333
No 216
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.34 E-value=0.0021 Score=58.20 Aligned_cols=25 Identities=28% Similarity=0.464 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.-+.|.||+|+||||+++.++..+
T Consensus 6 g~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 6 GLLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CCEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4568899999999999999999876
No 217
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.30 E-value=0.0023 Score=58.68 Aligned_cols=28 Identities=29% Similarity=0.445 Sum_probs=24.0
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
++.-+.|.||+|+|||||++.|+..+..
T Consensus 7 ~g~~i~l~GpsGsGKsTl~~~L~~~~~~ 34 (208)
T 3tau_A 7 RGLLIVLSGPSGVGKGTVREAVFKDPET 34 (208)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHSTTC
T ss_pred CCcEEEEECcCCCCHHHHHHHHHhhCCC
Confidence 3456889999999999999999998753
No 218
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.29 E-value=0.0028 Score=57.34 Aligned_cols=28 Identities=36% Similarity=0.667 Sum_probs=23.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
+.|+|.||+|+|||+|++.+..+....|
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~~~ 29 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPDSF 29 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTTTE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCCCe
Confidence 4599999999999999999998865433
No 219
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.29 E-value=0.0026 Score=56.86 Aligned_cols=25 Identities=20% Similarity=0.514 Sum_probs=22.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.-+.|.||+|+|||||++.++....
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4688999999999999999998764
No 220
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.28 E-value=0.0031 Score=57.77 Aligned_cols=34 Identities=18% Similarity=0.276 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC----CcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~----~~~~~v~~ 282 (473)
+.-|+|.|+||+||||+++.++..++ .+++.++.
T Consensus 25 ~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 25 GLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 45688999999999999999998764 45666653
No 221
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.28 E-value=0.002 Score=58.70 Aligned_cols=33 Identities=21% Similarity=0.344 Sum_probs=27.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~ 282 (473)
.++++|.||+|+|||+||..++.... .++..+.
T Consensus 34 g~~ilI~GpsGsGKStLA~~La~~g~-~iIsdDs 66 (205)
T 2qmh_A 34 GLGVLITGDSGVGKSETALELVQRGH-RLIADDR 66 (205)
T ss_dssp TEEEEEECCCTTTTHHHHHHHHTTTC-EEEESSE
T ss_pred CEEEEEECCCCCCHHHHHHHHHHhCC-eEEecch
Confidence 57899999999999999999998866 6655443
No 222
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.22 E-value=0.0033 Score=66.09 Aligned_cols=37 Identities=16% Similarity=0.255 Sum_probs=28.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCcc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSL 285 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l 285 (473)
+.-|+|.|.||+||||+|+.+|..++ .....++..++
T Consensus 35 ~~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s~D~~ 74 (520)
T 2axn_A 35 PTVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFNVGEY 74 (520)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEecccHH
Confidence 45689999999999999999999884 44444554444
No 223
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=96.21 E-value=0.0048 Score=73.69 Aligned_cols=41 Identities=24% Similarity=0.280 Sum_probs=32.5
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCccc
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASSLT 286 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~l~ 286 (473)
..+...++|+||||||||+||.+++.+. |.+.+.++..+..
T Consensus 1078 i~~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~ 1121 (2050)
T 3cmu_A 1078 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 1121 (2050)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCC
T ss_pred cCCCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccH
Confidence 4456789999999999999999997654 6677777766543
No 224
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=96.18 E-value=0.028 Score=59.28 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=35.4
Q ss_pred CcEEEEeecCCCC--CCCHHHhcccccccccCCCcHHHHHHHHH
Q 012000 338 DLVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPDENVRRLLLK 379 (473)
Q Consensus 338 ~~v~vI~tTn~~~--~Ld~al~rRf~~~i~~~~P~~~~r~~il~ 379 (473)
-+|-+|.+|.+|. .|+..++.-|..+|.+...+..+...++-
T Consensus 377 ~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr~ILd 420 (574)
T 2iut_A 377 AGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSRTILD 420 (574)
T ss_dssp TTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHHHHHS
T ss_pred CCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHHHhcC
Confidence 3488899999988 79999999999889999998888777763
No 225
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=96.18 E-value=0.0097 Score=64.19 Aligned_cols=57 Identities=18% Similarity=0.258 Sum_probs=36.3
Q ss_pred CCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 213 VKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 213 ~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..|-+---.+.+++++...+.. ..-.|++||||||||+++-.+...+ +..++.+..+
T Consensus 183 ~~~~~~~LN~~Q~~AV~~al~~--------------~~~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~T 242 (646)
T 4b3f_X 183 LTFFNTCLDTSQKEAVLFALSQ--------------KELAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPS 242 (646)
T ss_dssp CCCSSTTCCHHHHHHHHHHHHC--------------SSEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred ccccCCCCCHHHHHHHHHHhcC--------------CCceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCc
Confidence 3343334577888888776631 1247899999999998655544332 5566666554
No 226
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.16 E-value=0.0034 Score=56.81 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||+|+|||||++.++....
T Consensus 7 g~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 7 ANLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999864
No 227
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=96.16 E-value=0.0084 Score=61.46 Aligned_cols=36 Identities=25% Similarity=0.188 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
++.-|++.||+|+||||++..+|..+ |..+..+++.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D 137 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSD 137 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECC
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 46789999999999999999998765 5566655543
No 228
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=96.14 E-value=0.0045 Score=57.42 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=28.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH--c-------CCcEEEEecCc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASE--S-------QATFFNVSASS 284 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e--~-------~~~~~~v~~~~ 284 (473)
+..-++|+||||+|||+|++.++.. . +...+.++...
T Consensus 23 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 23 TGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 3456899999999999999999985 2 34566666544
No 229
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.05 E-value=0.004 Score=56.91 Aligned_cols=29 Identities=17% Similarity=0.264 Sum_probs=27.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
-|.|.||+|||||++++.||..+|.+|+.
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58899999999999999999999999984
No 230
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.03 E-value=0.0037 Score=56.99 Aligned_cols=26 Identities=31% Similarity=0.284 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-+.|.||+|+|||||++.|+..++
T Consensus 6 ~~~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 6 PFVIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHHG
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34578999999999999999999887
No 231
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=95.95 E-value=0.0042 Score=55.70 Aligned_cols=25 Identities=36% Similarity=0.638 Sum_probs=22.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+-+.|.||+|+|||||++.++..+.
T Consensus 2 ~ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 2 RPIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CCEEEESSSSSSHHHHHHHHHHHCG
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3478999999999999999998764
No 232
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=95.95 E-value=0.021 Score=59.54 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=34.4
Q ss_pred cEEEEeecCCCC--CCCHHHhcccccccccCCCcHHHHHHHHHH
Q 012000 339 LVIVMGATNKPQ--ELDDAVLRRLVKRIYVPLPDENVRRLLLKH 380 (473)
Q Consensus 339 ~v~vI~tTn~~~--~Ld~al~rRf~~~i~~~~P~~~~r~~il~~ 380 (473)
.+-+|.+|.+|. .++..++.-|..+|-+...+..+...++..
T Consensus 332 GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ilg~ 375 (512)
T 2ius_A 332 GIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQ 375 (512)
T ss_dssp TEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHHHHSS
T ss_pred CcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHHhcCC
Confidence 377788888887 589999998988899999998888877653
No 233
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=95.94 E-value=0.0043 Score=56.97 Aligned_cols=35 Identities=23% Similarity=0.346 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
+...++|+||||+|||+|++.++... +..++.++.
T Consensus 22 ~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~ 59 (235)
T 2w0m_A 22 QGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTT 59 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEES
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEc
Confidence 34568899999999999999998654 455555554
No 234
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=95.93 E-value=0.0071 Score=54.93 Aligned_cols=33 Identities=21% Similarity=0.130 Sum_probs=26.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
+.-+.|.||+|+||||+++.++..+ +.+++.++
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~ 57 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFH 57 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEec
Confidence 4568899999999999999999875 55555554
No 235
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=95.92 E-value=0.0042 Score=56.76 Aligned_cols=26 Identities=31% Similarity=0.521 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||+|+|||||++.|+..+.
T Consensus 22 g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 22 RQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp CEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45678999999999999999999875
No 236
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=95.91 E-value=0.0041 Score=56.51 Aligned_cols=26 Identities=38% Similarity=0.625 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.+.+.|.||+|+|||||++.++..+.
T Consensus 4 g~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 4 PRPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp -CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 45689999999999999999998763
No 237
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=95.89 E-value=0.007 Score=56.20 Aligned_cols=38 Identities=24% Similarity=0.308 Sum_probs=28.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.+..-++|+||||+|||+|+..+|... +..++.++...
T Consensus 21 ~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~ 61 (247)
T 2dr3_A 21 PERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE 61 (247)
T ss_dssp ETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC
Confidence 344568999999999999998887643 55666666543
No 238
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=95.87 E-value=0.011 Score=57.73 Aligned_cols=37 Identities=22% Similarity=0.270 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.++.-++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 102 ~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D 141 (306)
T 1vma_A 102 EPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAAD 141 (306)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccc
Confidence 345678999999999999999999865 4555555543
No 239
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=95.85 E-value=0.0071 Score=59.45 Aligned_cols=37 Identities=19% Similarity=0.276 Sum_probs=28.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecCc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~~ 284 (473)
+..-++|+||||+|||+||..+|... +...+.++...
T Consensus 106 ~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~ 151 (324)
T 2z43_A 106 TRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEG 151 (324)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred CCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 34568999999999999999999875 44566666544
No 240
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=95.82 E-value=0.0074 Score=55.02 Aligned_cols=26 Identities=27% Similarity=0.562 Sum_probs=23.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.+-+.|.||+|+|||+|+++|+....
T Consensus 19 g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 19 RKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 45688999999999999999998865
No 241
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.79 E-value=0.0056 Score=57.17 Aligned_cols=30 Identities=27% Similarity=0.433 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcEEEE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATFFNV 280 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~~~v 280 (473)
.+-|.||||+||||+|+.|+..++.+.+..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 467899999999999999999999887743
No 242
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=95.79 E-value=0.005 Score=57.39 Aligned_cols=23 Identities=35% Similarity=0.483 Sum_probs=20.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHH
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVA 270 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA 270 (473)
+..-+.|.||+|+|||||++.++
T Consensus 29 ~G~~~~l~GpnGsGKSTLl~~i~ 51 (251)
T 2ehv_A 29 EGTTVLLTGGTGTGKTTFAAQFI 51 (251)
T ss_dssp TTCEEEEECCTTSSHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHH
Confidence 34568999999999999999998
No 243
>2xze_A STAM-binding protein; hydrolase-protein transport complex; 1.75A {Homo sapiens}
Probab=95.78 E-value=0.071 Score=45.96 Aligned_cols=77 Identities=19% Similarity=0.186 Sum_probs=57.9
Q ss_pred HHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCC-----CchhhhHHHHHH-HHHHHHHHHHHHH
Q 012000 50 LKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSY-----ISTSEHEKVKSY-RQKISKWQSQVSD 123 (473)
Q Consensus 50 ~k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~-----~~~~~~~k~~~y-~~raek~k~~i~~ 123 (473)
++.|+..|..++.+|-..-..|+++.|+.+|.....++...+..-++-. .......++..- ++++|++|..+.+
T Consensus 33 l~~ylrta~~llr~A~~y~~egd~e~AYily~R~~~L~~e~IpkHpdy~~~~~~~~~~~l~~l~~~~~~~lE~LK~~L~~ 112 (146)
T 2xze_A 33 PRRYFRSGVEIIRMASIYSEEGNIEHAFILYNKYITLFIEKLPKHRDYKSAVIPEKKDTVKKLKEIAFPKAEELKAELLK 112 (146)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTGGGSTTTTTCCCTTHHHHHHHHHHTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHcccCccchhhhhHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999987764222211 122233344433 7778888888776
Q ss_pred HHH
Q 012000 124 RLQ 126 (473)
Q Consensus 124 rl~ 126 (473)
+-.
T Consensus 113 rY~ 115 (146)
T 2xze_A 113 RYT 115 (146)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 244
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=95.78 E-value=0.0048 Score=56.70 Aligned_cols=27 Identities=33% Similarity=0.357 Sum_probs=22.7
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+..-+.|.||+|+|||||++.++...
T Consensus 23 ~~G~~~~l~G~nGsGKSTll~~l~g~~ 49 (231)
T 4a74_A 23 ETQAITEVFGEFGSGKTQLAHTLAVMV 49 (231)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 344568899999999999999999853
No 245
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.76 E-value=0.007 Score=56.45 Aligned_cols=31 Identities=23% Similarity=0.261 Sum_probs=25.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC--CcEEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ--ATFFN 279 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~ 279 (473)
..-|.|.||||+||||+++.++..++ ..++.
T Consensus 26 g~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 26 SAFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 45688999999999999999999986 34443
No 246
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.76 E-value=0.0025 Score=58.12 Aligned_cols=25 Identities=24% Similarity=0.332 Sum_probs=22.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
-|.|.||+|+||||+++.|+..++.
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~ 26 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRA 26 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHh
Confidence 3789999999999999999998853
No 247
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.72 E-value=0.0083 Score=64.14 Aligned_cols=34 Identities=21% Similarity=0.294 Sum_probs=30.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
+.-|+|.|+||+||||+|++|+..+ +.+++.++.
T Consensus 52 g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 52 GCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 4568999999999999999999998 889988864
No 248
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=95.69 E-value=0.012 Score=58.36 Aligned_cols=38 Identities=16% Similarity=0.197 Sum_probs=28.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~~ 284 (473)
.+..-++|+||||+|||+||..+|... +...+.++...
T Consensus 120 ~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 120 ESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp CSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 334568899999999999999999863 44566666544
No 249
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=95.69 E-value=0.013 Score=56.90 Aligned_cols=61 Identities=21% Similarity=0.206 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 222 EKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 222 ~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
+.+++.+.+.+...+..... .....++..++|.||+|+||||++..+|..+ |..+..+++.
T Consensus 79 ~~~~~~~~~~l~~~l~~~~~-~~~~~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D 143 (296)
T 2px0_A 79 ENVVGKLQEILCDMLPSADK-WQEPIHSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTD 143 (296)
T ss_dssp TTHHHHHHHHHHTTSCCGGG-SCCCCCSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECC
T ss_pred HHHHHHHHHHHHHHhCCccc-ccccCCCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecC
Confidence 44556666555433322111 1122345678999999999999999998754 4466655543
No 250
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=95.67 E-value=0.015 Score=59.55 Aligned_cols=35 Identities=29% Similarity=0.151 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++.-++|.||+|+||||++..+|..+ +..+..+++
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~ 133 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAA 133 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 45678999999999999999998765 555555553
No 251
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.62 E-value=0.0061 Score=53.92 Aligned_cols=22 Identities=32% Similarity=0.475 Sum_probs=18.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVA 270 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA 270 (473)
..-+.|.||+|+|||||++++.
T Consensus 9 gei~~l~G~nGsGKSTl~~~~~ 30 (171)
T 4gp7_A 9 LSLVVLIGSSGSGKSTFAKKHF 30 (171)
T ss_dssp SEEEEEECCTTSCHHHHHHHHS
T ss_pred CEEEEEECCCCCCHHHHHHHHc
Confidence 3458899999999999999844
No 252
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.62 E-value=0.015 Score=56.67 Aligned_cols=52 Identities=23% Similarity=0.227 Sum_probs=32.5
Q ss_pred HHHHHHHHHHHhchhcchh---hhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 222 EKAKQALMEMVILPAKRRD---LFTGLRRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 222 ~~~k~~L~e~v~~p~~~~~---~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.+++.+.+.+...+.... -..-...++.-+.|.||.|+||||+++.+|..+
T Consensus 70 ~~~~~~~~~~l~~~l~~~~~~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 70 SEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp HHHHHHHHHHHHHHHCC--CCCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCcccccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4555666665543332211 011012345678899999999999999999875
No 253
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=95.55 E-value=0.011 Score=58.88 Aligned_cols=38 Identities=24% Similarity=0.302 Sum_probs=29.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~~ 284 (473)
.+..-+.|+||||+|||+|++.++... +...+.++..+
T Consensus 129 ~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 129 ETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp ESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 344568899999999999999999876 24556666654
No 254
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.48 E-value=0.0085 Score=55.28 Aligned_cols=25 Identities=36% Similarity=0.521 Sum_probs=22.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||+|+|||||++.|+...
T Consensus 23 G~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 23 IYPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhC
Confidence 4568899999999999999999876
No 255
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.46 E-value=0.0092 Score=54.39 Aligned_cols=26 Identities=23% Similarity=0.452 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||+|+|||||+++|+..+.
T Consensus 20 Gei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 20 GRVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCC
Confidence 34578999999999999999999874
No 256
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=95.46 E-value=0.011 Score=52.64 Aligned_cols=29 Identities=24% Similarity=0.367 Sum_probs=24.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.+|+||.|++|+|||++|.++... |..++
T Consensus 16 G~gvli~G~SGaGKStlal~L~~r-G~~lv 44 (181)
T 3tqf_A 16 KMGVLITGEANIGKSELSLALIDR-GHQLV 44 (181)
T ss_dssp TEEEEEEESSSSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc-CCeEe
Confidence 579999999999999999999874 54443
No 257
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=95.46 E-value=0.014 Score=54.21 Aligned_cols=37 Identities=24% Similarity=0.223 Sum_probs=26.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHH----cCCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASE----SQATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e----~~~~~~~v~~~ 283 (473)
.+..-++|+|+||+|||+||..+|.. .+.+++.++..
T Consensus 28 ~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E 68 (251)
T 2zts_A 28 PEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLE 68 (251)
T ss_dssp ETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeeccc
Confidence 34456899999999999999887643 25566655543
No 258
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.46 E-value=0.0098 Score=52.15 Aligned_cols=25 Identities=32% Similarity=0.356 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...+.|.||.|+|||||+++++..+
T Consensus 33 Ge~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 33 AIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhC
Confidence 3458899999999999999999987
No 259
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=95.46 E-value=0.011 Score=58.75 Aligned_cols=36 Identities=22% Similarity=0.350 Sum_probs=27.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+..-++|+||||+|||+||..++..+ +..++.++..
T Consensus 60 ~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E 98 (349)
T 2zr9_A 60 RGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAE 98 (349)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 34569999999999999999998654 4566666544
No 260
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.46 E-value=0.0089 Score=55.56 Aligned_cols=30 Identities=20% Similarity=0.308 Sum_probs=27.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
.-|.|.|++|||||++++.||..+|.+|+.
T Consensus 15 ~iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 15 LIITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred eEEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 357899999999999999999999999875
No 261
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=95.42 E-value=0.013 Score=58.54 Aligned_cols=36 Identities=28% Similarity=0.373 Sum_probs=28.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+..-++|+||||+|||+||..+|..+ +.+++.++..
T Consensus 62 ~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E 100 (356)
T 1u94_A 62 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAE 100 (356)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 34568999999999999999998764 5567777653
No 262
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.41 E-value=0.015 Score=56.77 Aligned_cols=26 Identities=27% Similarity=0.304 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
++.-+.|.||+|+||||+++.+|..+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll 126 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYY 126 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 34568899999999999999999875
No 263
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=95.41 E-value=0.028 Score=55.10 Aligned_cols=37 Identities=22% Similarity=0.201 Sum_probs=29.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.++..++|.||+|+||||++..+|..+ +..+..+++.
T Consensus 103 ~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D 142 (320)
T 1zu4_A 103 NRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAAD 142 (320)
T ss_dssp TSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCC
Confidence 446678999999999999999998765 5566666543
No 264
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.35 E-value=0.023 Score=54.92 Aligned_cols=27 Identities=19% Similarity=0.308 Sum_probs=23.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
++.-|.|.||+|+|||||++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345678999999999999999998875
No 265
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=95.32 E-value=0.013 Score=57.18 Aligned_cols=34 Identities=21% Similarity=0.181 Sum_probs=26.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc-----CCcEEEEecCc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES-----QATFFNVSASS 284 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~-----~~~~~~v~~~~ 284 (473)
-++|+||||+|||+|+..++..+ +..++.++...
T Consensus 30 iteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~ 68 (333)
T 3io5_A 30 LLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEF 68 (333)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSC
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccc
Confidence 57899999999999988876553 56677777543
No 266
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.31 E-value=0.011 Score=54.75 Aligned_cols=27 Identities=22% Similarity=0.370 Sum_probs=23.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+..-+.|.||+|+|||||+++++....
T Consensus 15 ~G~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 15 QGTLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCcEEEEECCCCCCHHHHHHHHhccCC
Confidence 345688999999999999999999865
No 267
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=95.28 E-value=0.021 Score=56.97 Aligned_cols=53 Identities=25% Similarity=0.234 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHHhchhcchh--hhhcC-CCCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 221 LEKAKQALMEMVILPAKRRD--LFTGL-RRPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~--~~~~~-~~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+.+++.|.+.+...+.... ..-.+ ..++.-+.|.||.|+||||+++.||..+
T Consensus 126 ~~~~~~~l~~~l~~~l~~~~~~~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 126 GSEIKDALKESVLEMLAKKNSKTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp HHHHHHHHHHHHHHHHCCC---CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCcccCCCcceecCCCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 35566666666643332211 00011 2345678899999999999999999875
No 268
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.27 E-value=0.025 Score=57.57 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=35.2
Q ss_pred CCCcccccChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 212 SVKWEDVAGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 212 ~~~~~divGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...++++.-....+..|...+. .+..-++|.||+|+|||||+++++..+.
T Consensus 143 ~~~l~~Lg~~~~~~~~L~~l~~-------------~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 143 RLDLHSLGMTAHNHDNFRRLIK-------------RPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCCGGGSCCCHHHHHHHHHHHT-------------SSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCCHHHcCCCHHHHHHHHHHHH-------------hcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 4567777655555555555431 1223478999999999999999999874
No 269
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=95.22 E-value=0.011 Score=52.89 Aligned_cols=31 Identities=23% Similarity=0.401 Sum_probs=26.5
Q ss_pred EEEEcCCCCcHHHHHHHHHHHcCCcEEEEecC
Q 012000 252 LLLFGPPGNGKTMLAKAVASESQATFFNVSAS 283 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~~~~~~~v~~~ 283 (473)
+|++|++|+|||++|..++.. +.+.+.+...
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~ 32 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATS 32 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecC
Confidence 789999999999999999987 7777766653
No 270
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.14 E-value=0.013 Score=57.23 Aligned_cols=32 Identities=25% Similarity=0.468 Sum_probs=26.2
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
.+...+.|+||+|+|||||++.|+..+...++
T Consensus 124 ~~Ge~vaIvGpsGsGKSTLl~lL~gl~~G~I~ 155 (305)
T 2v9p_A 124 PKKNCLAFIGPPNTGKSMLCNSLIHFLGGSVL 155 (305)
T ss_dssp TTCSEEEEECSSSSSHHHHHHHHHHHHTCEEE
T ss_pred cCCCEEEEECCCCCcHHHHHHHHhhhcCceEE
Confidence 34567899999999999999999998755443
No 271
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.12 E-value=0.013 Score=54.82 Aligned_cols=27 Identities=11% Similarity=0.090 Sum_probs=23.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
.-+-|.||.|+|||||++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 347799999999999999999988744
No 272
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=95.12 E-value=0.011 Score=53.34 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+.|.||+|+|||||++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 47899999999999999999876
No 273
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=95.11 E-value=0.013 Score=55.79 Aligned_cols=25 Identities=24% Similarity=0.377 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-++|.||+|+|||||+++++..+
T Consensus 25 g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 25 MGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCEEEEECCCCccHHHHHHHHHHhC
Confidence 3458899999999999999998864
No 274
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=95.09 E-value=0.02 Score=56.40 Aligned_cols=27 Identities=22% Similarity=0.244 Sum_probs=23.3
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.++.-+.|.||+|+||||+++.+|..+
T Consensus 127 ~~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 127 EKPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp CSSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 345678899999999999999999865
No 275
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.08 E-value=0.0076 Score=58.35 Aligned_cols=37 Identities=8% Similarity=0.189 Sum_probs=25.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEecCccc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSASSLT 286 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~~~l~ 286 (473)
.-|.|.||+|+||||+++.++..++ ..+..++..++.
T Consensus 6 ~iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 6 PIISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp CEEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 3588999999999999999999776 334555555443
No 276
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=95.03 E-value=0.013 Score=56.11 Aligned_cols=25 Identities=36% Similarity=0.442 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-++|+||||+|||+|+..++..+
T Consensus 30 G~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 30 GTVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp TSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHHH
Confidence 4568999999999999999998643
No 277
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=94.99 E-value=0.021 Score=61.31 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=32.3
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
.+.+++++...+. ....+++||||||||+++..++..+ +..++.+..+
T Consensus 182 n~~Q~~av~~~l~---------------~~~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~t 233 (624)
T 2gk6_A 182 NHSQVYAVKTVLQ---------------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 233 (624)
T ss_dssp CHHHHHHHHHHHT---------------CSEEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESS
T ss_pred CHHHHHHHHHHhc---------------CCCeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 5666666665542 2358899999999999887776543 3455555444
No 278
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.96 E-value=0.018 Score=53.76 Aligned_cols=26 Identities=23% Similarity=0.275 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-|.|.|++|+||||+++.++..++
T Consensus 2 ~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 2 PRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 34688999999999999999999984
No 279
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=94.95 E-value=0.014 Score=56.18 Aligned_cols=35 Identities=11% Similarity=0.054 Sum_probs=26.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~ 282 (473)
+..-++|.||||+|||+|++.+|..+ |.+++.++.
T Consensus 34 ~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~ 72 (296)
T 1cr0_A 34 GGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAML 72 (296)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEES
T ss_pred CCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 34568899999999999999998764 335555543
No 280
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=94.92 E-value=0.019 Score=56.21 Aligned_cols=25 Identities=20% Similarity=0.189 Sum_probs=21.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHH
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
+..-++|+||||+|||+||..+|..
T Consensus 97 ~g~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 97 SQSVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3456899999999999999999875
No 281
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=94.92 E-value=0.01 Score=55.09 Aligned_cols=26 Identities=31% Similarity=0.433 Sum_probs=15.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHH-HHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVA-SESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA-~e~~ 274 (473)
..-+.|.||+|+|||||++.|+ ..+.
T Consensus 27 G~ii~l~Gp~GsGKSTl~~~L~~~~~~ 53 (231)
T 3lnc_A 27 GVILVLSSPSGCGKTTVANKLLEKQKN 53 (231)
T ss_dssp CCEEEEECSCC----CHHHHHHC----
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCCC
Confidence 3458899999999999999999 7653
No 282
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=94.88 E-value=0.035 Score=65.54 Aligned_cols=38 Identities=26% Similarity=0.343 Sum_probs=30.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~~ 284 (473)
.+...++|+||||+|||+||..+|..+ +.+++.++...
T Consensus 730 ~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ee 770 (1706)
T 3cmw_A 730 PMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 770 (1706)
T ss_dssp ETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTS
T ss_pred CCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccc
Confidence 456779999999999999999998765 45677776543
No 283
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=94.87 E-value=0.019 Score=61.01 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=29.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC----CcEEEEecCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ----ATFFNVSASS 284 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~----~~~~~v~~~~ 284 (473)
+.-|+|.|+||+||||+|++|+..++ .+++.++...
T Consensus 396 ~~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~D~ 435 (573)
T 1m8p_A 396 GFTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLGDT 435 (573)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEHHH
T ss_pred ceEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECcHH
Confidence 45688999999999999999999886 6777776433
No 284
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.87 E-value=0.008 Score=57.01 Aligned_cols=26 Identities=12% Similarity=0.221 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-|.|.|++|+||||+++.|+..+.
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45688999999999999999999984
No 285
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.78 E-value=0.017 Score=56.33 Aligned_cols=26 Identities=15% Similarity=0.147 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-+.|.||+|+|||||++.|+..++
T Consensus 80 g~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 80 PYIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 34577999999999999999999765
No 286
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=94.73 E-value=0.034 Score=49.32 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...|+|.|++|+|||+|+.++....
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~~ 72 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTDS 72 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998753
No 287
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=94.70 E-value=0.18 Score=39.29 Aligned_cols=50 Identities=24% Similarity=0.155 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCCCCCCCchhhhH
Q 012000 56 LAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTPVPSYISTSEHE 105 (473)
Q Consensus 56 ~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~~~~~~~~~~~~ 105 (473)
.|-.+=.+|=.+-..|+|++||.|++++..||.++++....+....++.-
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~yL~eAmkltqs~qa~~SLqL 63 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATTYLSEAMKLTESEQAHLSLEL 63 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence 45555567777788999999999999999999999998755444444333
No 288
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=94.68 E-value=0.12 Score=45.38 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 289
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=94.64 E-value=0.029 Score=52.12 Aligned_cols=33 Identities=15% Similarity=0.068 Sum_probs=25.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
..-++++||||+||||++..++..+ +..++.+.
T Consensus 12 G~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~ 47 (223)
T 2b8t_A 12 GWIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFK 47 (223)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred cEEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEE
Confidence 3457889999999999999888765 55555553
No 290
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=94.64 E-value=0.02 Score=55.96 Aligned_cols=27 Identities=15% Similarity=0.057 Sum_probs=22.9
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 345577999999999999999998763
No 291
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.62 E-value=0.095 Score=45.83 Aligned_cols=23 Identities=26% Similarity=0.442 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
-.|+|.|++|+|||+|+.++...
T Consensus 5 ~ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 5 YKLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 292
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=94.59 E-value=0.022 Score=50.49 Aligned_cols=24 Identities=21% Similarity=0.203 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.+.|.|++|+|||||+..++..+
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l 28 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAA 28 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhh
Confidence 468899999999999999998875
No 293
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=94.59 E-value=0.027 Score=58.44 Aligned_cols=26 Identities=27% Similarity=0.298 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
++.-++|.||+|+|||||++.||..+
T Consensus 292 ~GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 292 APFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCcccHHHHHHHHHHHh
Confidence 34568899999999999999999865
No 294
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=94.58 E-value=0.03 Score=56.72 Aligned_cols=38 Identities=18% Similarity=0.274 Sum_probs=27.4
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---------CCcEEEEecCc
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---------QATFFNVSASS 284 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---------~~~~~~v~~~~ 284 (473)
.+..-++|+||||||||+|++.+|-.. +...+.++...
T Consensus 176 ~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 176 ETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred CCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 344568999999999999999776432 23466666554
No 295
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=94.58 E-value=0.02 Score=57.02 Aligned_cols=24 Identities=29% Similarity=0.391 Sum_probs=21.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..+++.||+|+|||||.++++..+
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~ 147 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYL 147 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358899999999999999998865
No 296
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=94.55 E-value=0.024 Score=55.67 Aligned_cols=26 Identities=12% Similarity=0.098 Sum_probs=22.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-+.|.||+|||||||++.|+..++
T Consensus 92 p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 92 PYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 44678999999999999999998875
No 297
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=94.44 E-value=0.022 Score=57.14 Aligned_cols=26 Identities=23% Similarity=0.355 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+...++|.||+|+||||++++++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 34568999999999999999999865
No 298
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=94.42 E-value=0.053 Score=56.50 Aligned_cols=35 Identities=20% Similarity=0.182 Sum_probs=27.1
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++..|+|.|+||+||||++..+|..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 45679999999999999999999765 556665554
No 299
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.37 E-value=0.028 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.235 Sum_probs=21.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-+.|.||+|+|||||++.++..+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468899999999999999998864
No 300
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=94.36 E-value=0.025 Score=53.03 Aligned_cols=25 Identities=24% Similarity=0.339 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.-|.|.||+|+||||+++.++..+
T Consensus 27 ~~~i~~eG~~GsGKsT~~~~l~~~l 51 (236)
T 3lv8_A 27 AKFIVIEGLEGAGKSTAIQVVVETL 51 (236)
T ss_dssp CCEEEEEESTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4568899999999999999999876
No 301
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=94.35 E-value=0.036 Score=61.22 Aligned_cols=48 Identities=21% Similarity=0.290 Sum_probs=31.6
Q ss_pred hHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 221 LEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 221 l~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
.+.+++++...+. ...+++.||||||||+++..++..+ +..++.+..+
T Consensus 358 n~~Q~~Av~~~l~---------------~~~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~t 409 (800)
T 2wjy_A 358 NHSQVYAVKTVLQ---------------RPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPS 409 (800)
T ss_dssp CHHHHHHHHHHHT---------------SSEEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESS
T ss_pred CHHHHHHHHHhcc---------------CCeEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCc
Confidence 5566666665542 1357899999999999888776643 3445544433
No 302
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.31 E-value=0.022 Score=53.24 Aligned_cols=27 Identities=19% Similarity=0.453 Sum_probs=22.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+...+.|.||.|+|||||++.++....
T Consensus 30 ~Ge~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 30 EGEFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCCC
Confidence 345688999999999999999997653
No 303
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=94.29 E-value=0.046 Score=55.91 Aligned_cols=35 Identities=29% Similarity=0.243 Sum_probs=27.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++..|+|+|+||+||||++..+|..+ |..+..+++
T Consensus 98 ~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~ 135 (432)
T 2v3c_C 98 KQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAA 135 (432)
T ss_dssp SCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEec
Confidence 34679999999999999999999865 345555554
No 304
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=94.27 E-value=0.046 Score=53.38 Aligned_cols=36 Identities=22% Similarity=0.147 Sum_probs=27.1
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
.+..-++|.|+||+|||+|+..+|... +.+++.++.
T Consensus 66 ~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 66 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 445569999999999999999998654 345555543
No 305
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.25 E-value=0.025 Score=50.00 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
-.+|+||.|+|||+|++||+-.++
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTT
T ss_pred cEEEECCCCCCHHHHHHHHHHHHc
Confidence 568999999999999999998765
No 306
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.19 E-value=0.024 Score=53.05 Aligned_cols=26 Identities=27% Similarity=0.335 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+..-+.|.||.|+|||||++.|+...
T Consensus 30 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 30 EGALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999999764
No 307
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.17 E-value=0.019 Score=52.65 Aligned_cols=23 Identities=43% Similarity=0.574 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.-+.|.||.|+|||||+++++..
T Consensus 23 e~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 23 TIVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp SEEEEECCTTSSTTHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 35789999999999999999875
No 308
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=94.16 E-value=0.015 Score=60.21 Aligned_cols=26 Identities=23% Similarity=0.422 Sum_probs=23.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+.-|+|.|.||+||||+++.++..++
T Consensus 39 ~~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 39 PTLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred cEEEEEECCCCCCHHHHHHHHHHHHh
Confidence 45699999999999999999999875
No 309
>3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens}
Probab=94.15 E-value=0.16 Score=45.39 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 25 ~ki~vvG~~~~GKSsli~~l~~~ 47 (201)
T 3oes_A 25 RKVVILGYRCVGKTSLAHQFVEG 47 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCcCHHHHHHHHHhC
Confidence 46999999999999999999874
No 310
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.15 E-value=0.026 Score=50.59 Aligned_cols=22 Identities=27% Similarity=0.471 Sum_probs=20.4
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
.+.|.||+|+|||+|++.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999975
No 311
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.11 E-value=0.032 Score=51.37 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=25.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~ 281 (473)
..-|.|.||+|+||||+++.++..+. .+++.+.
T Consensus 6 g~~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 6 GLFVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 34578999999999999999998873 4554443
No 312
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.10 E-value=0.023 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.301 Sum_probs=21.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||.|+|||||+++++...
T Consensus 30 Ge~~~iiG~nGsGKSTLl~~l~Gl~ 54 (224)
T 2pcj_A 30 GEFVSIIGASGSGKSTLLYILGLLD 54 (224)
T ss_dssp TCEEEEEECTTSCHHHHHHHHTTSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 3457899999999999999999755
No 313
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.09 E-value=0.029 Score=52.62 Aligned_cols=25 Identities=28% Similarity=0.534 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.-+.|.||.|+|||||++.++....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 5678999999999999999998653
No 314
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.08 E-value=0.048 Score=50.29 Aligned_cols=30 Identities=20% Similarity=0.184 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
..-|.|.|++|+||||+++.+++.++....
T Consensus 5 g~~i~~eG~~g~GKst~~~~l~~~l~~~~~ 34 (216)
T 3tmk_A 5 GKLILIEGLDRTGKTTQCNILYKKLQPNCK 34 (216)
T ss_dssp CCEEEEEECSSSSHHHHHHHHHHHHCSSEE
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhcccce
Confidence 356889999999999999999999986433
No 315
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.07 E-value=0.034 Score=50.43 Aligned_cols=25 Identities=28% Similarity=0.562 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...|+|.|++|+|||+|+.+++...
T Consensus 12 ~~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 12 QPSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCC
Confidence 4579999999999999999998754
No 316
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.05 E-value=0.026 Score=50.42 Aligned_cols=23 Identities=26% Similarity=0.453 Sum_probs=20.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
-+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 48899999999999999999754
No 317
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=94.02 E-value=0.036 Score=59.32 Aligned_cols=24 Identities=29% Similarity=0.403 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.+++.||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 569999999999999988876543
No 318
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=93.99 E-value=0.026 Score=58.86 Aligned_cols=26 Identities=15% Similarity=0.019 Sum_probs=23.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
..|+|.|++||||||++++||+.++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 56889999999999999999999974
No 319
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=93.88 E-value=0.029 Score=53.31 Aligned_cols=26 Identities=15% Similarity=0.385 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||+++|+....
T Consensus 32 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 32 GDVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34578999999999999999998653
No 320
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.88 E-value=0.021 Score=60.22 Aligned_cols=26 Identities=31% Similarity=0.457 Sum_probs=23.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...+.|.|++|||||||+++||..++
T Consensus 369 G~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 369 GFTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp CEEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred ceEEEEECCCCChHHHHHHHHHHhhc
Confidence 35688999999999999999999874
No 321
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=93.86 E-value=0.031 Score=52.02 Aligned_cols=25 Identities=20% Similarity=0.177 Sum_probs=19.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-|.|.||+|+||||+++.+++.+
T Consensus 25 g~~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 25 GKFITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp CCEEEEECCC---CHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3458889999999999999999887
No 322
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=93.86 E-value=0.034 Score=47.44 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
.+++.|++|+|||+|++++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
No 323
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.85 E-value=0.032 Score=55.63 Aligned_cols=28 Identities=25% Similarity=0.442 Sum_probs=24.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
..-+.|.||+|+|||||++.|+..+...
T Consensus 170 g~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 170 AKTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred hCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 3568899999999999999999987654
No 324
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=93.80 E-value=0.031 Score=52.51 Aligned_cols=26 Identities=23% Similarity=0.404 Sum_probs=22.4
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+..-+.|.||.|+|||||+++|+...
T Consensus 27 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 27 PNSIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp TTEEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 34568899999999999999999865
No 325
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.76 E-value=0.036 Score=47.55 Aligned_cols=23 Identities=13% Similarity=0.247 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 6 ~~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 6 IKMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 35899999999999999999874
No 326
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=93.76 E-value=0.053 Score=59.92 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=23.7
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
.+|+.||||||||+++..++..+ +..++.+..+
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~t 413 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPS 413 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCc
Confidence 57999999999999877665432 4556655544
No 327
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=93.76 E-value=0.032 Score=53.36 Aligned_cols=23 Identities=22% Similarity=0.501 Sum_probs=21.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHc
Q 012000 251 GLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.+.|.||+|+|||||.++|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999999865
No 328
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=93.70 E-value=0.036 Score=55.24 Aligned_cols=24 Identities=33% Similarity=0.506 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-+.|.||.|||||||.++||...
T Consensus 31 e~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 31 EILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCchHHHHHHHHhcCC
Confidence 457899999999999999999865
No 329
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=93.69 E-value=0.031 Score=51.47 Aligned_cols=26 Identities=31% Similarity=0.462 Sum_probs=22.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||+++++....
T Consensus 35 Ge~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 35 GNVVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp TCCEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34588999999999999999997653
No 330
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.69 E-value=0.04 Score=52.56 Aligned_cols=24 Identities=29% Similarity=0.566 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..-+.|.||.|+|||||++.|+..
T Consensus 46 Ge~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 46 GEVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 446889999999999999999975
No 331
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.67 E-value=0.039 Score=52.05 Aligned_cols=24 Identities=38% Similarity=0.620 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..-+.|.||.|+|||||++.|+..
T Consensus 29 Ge~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 29 GEVHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 345889999999999999999975
No 332
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.66 E-value=0.034 Score=52.77 Aligned_cols=26 Identities=27% Similarity=0.330 Sum_probs=22.5
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+...+.|.||.|+|||||+++|+...
T Consensus 45 ~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 45 SGTTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp TTCEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 34568899999999999999999765
No 333
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=93.64 E-value=0.023 Score=50.48 Aligned_cols=25 Identities=24% Similarity=0.250 Sum_probs=21.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..+.|.||+|+|||||++.|+..+.
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhh
Confidence 3588999999999999999998763
No 334
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=93.63 E-value=0.039 Score=47.11 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 4 YKVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 335
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.62 E-value=0.034 Score=52.70 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||+++++....
T Consensus 33 Ge~~~liG~nGsGKSTLlk~l~Gl~~ 58 (257)
T 1g6h_A 33 GDVTLIIGPNGSGKSTLINVITGFLK 58 (257)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999998653
No 336
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.61 E-value=0.035 Score=52.84 Aligned_cols=26 Identities=19% Similarity=0.494 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||++.|+....
T Consensus 50 Gei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 50 GEVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 34588999999999999999998653
No 337
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.61 E-value=0.047 Score=50.67 Aligned_cols=27 Identities=22% Similarity=0.187 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
+.-|.|.|++|+||||+++.+++.++.
T Consensus 21 ~~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 21 SMFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 455788899999999999999987654
No 338
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=93.60 E-value=0.11 Score=52.85 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=27.6
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++..+++.||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 45678899999999999999999865 455555554
No 339
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.59 E-value=0.037 Score=47.11 Aligned_cols=22 Identities=27% Similarity=0.475 Sum_probs=20.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
.|++.|++|+|||+|++++...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999865
No 340
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.58 E-value=0.036 Score=52.98 Aligned_cols=26 Identities=31% Similarity=0.464 Sum_probs=22.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||++.|+....
T Consensus 45 Ge~~~i~G~nGsGKSTLlk~l~Gl~~ 70 (271)
T 2ixe_A 45 GKVTALVGPNGSGKSTVAALLQNLYQ 70 (271)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 45688999999999999999998653
No 341
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=93.57 E-value=0.028 Score=58.78 Aligned_cols=34 Identities=18% Similarity=0.218 Sum_probs=26.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC--CcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ--ATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~--~~~~~v~~ 282 (473)
...++|.||+|+||||++++++..+. ...+.+..
T Consensus 260 g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied 295 (511)
T 2oap_1 260 KFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIED 295 (511)
T ss_dssp TCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEES
T ss_pred CCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcC
Confidence 34699999999999999999998763 33454443
No 342
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.57 E-value=0.035 Score=51.62 Aligned_cols=26 Identities=31% Similarity=0.397 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||.+.++....
T Consensus 34 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 34 GQLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 34688999999999999999998653
No 343
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=93.54 E-value=0.072 Score=54.59 Aligned_cols=38 Identities=21% Similarity=0.164 Sum_probs=28.2
Q ss_pred CCCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 246 RRPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 246 ~~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
..+..-++|.|+||+|||+||..+|... +.+++.++..
T Consensus 197 l~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE 238 (444)
T 2q6t_A 197 LGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLE 238 (444)
T ss_dssp CCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESS
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 3445568999999999999999987653 4456655543
No 344
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.54 E-value=0.039 Score=47.83 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.-+.|.|++|+|||+|.++++..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~ 26 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGE 26 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 35899999999999999999863
No 345
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=93.52 E-value=0.1 Score=50.47 Aligned_cols=35 Identities=29% Similarity=0.190 Sum_probs=27.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
+.-+++.|++|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 5668889999999999999998765 5666666554
No 346
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=93.51 E-value=0.033 Score=55.59 Aligned_cols=26 Identities=38% Similarity=0.548 Sum_probs=23.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...++|.||+|+|||||+++++....
T Consensus 175 G~~i~ivG~sGsGKSTll~~l~~~~~ 200 (361)
T 2gza_A 175 ERVIVVAGETGSGKTTLMKALMQEIP 200 (361)
T ss_dssp TCCEEEEESSSSCHHHHHHHHHTTSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHhcCC
Confidence 35699999999999999999998764
No 347
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.50 E-value=0.037 Score=51.89 Aligned_cols=26 Identities=31% Similarity=0.394 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||.+.|+....
T Consensus 32 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 32 GQIVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34578999999999999999998653
No 348
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.50 E-value=0.036 Score=52.17 Aligned_cols=26 Identities=23% Similarity=0.319 Sum_probs=22.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||++.|+....
T Consensus 35 Ge~~~i~G~nGsGKSTLl~~l~Gl~~ 60 (247)
T 2ff7_A 35 GEVIGIVGRSGSGKSTLTKLIQRFYI 60 (247)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999998653
No 349
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=93.50 E-value=0.075 Score=54.60 Aligned_cols=36 Identities=19% Similarity=0.224 Sum_probs=27.6
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEec
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSA 282 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~ 282 (473)
.+..-++|.|+||+|||+|+..+|..+ +.+++.++.
T Consensus 201 ~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 201 QRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 445568999999999999999988754 446666654
No 350
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.49 E-value=0.033 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.618 Sum_probs=19.5
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~ 271 (473)
-++|.|++|+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 489999999999999999986
No 351
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.48 E-value=0.043 Score=47.08 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 4 IKLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35899999999999999999864
No 352
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.48 E-value=0.036 Score=55.14 Aligned_cols=25 Identities=32% Similarity=0.561 Sum_probs=21.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.-+.|.||.|||||||.++||.-..
T Consensus 42 e~~~llGpnGsGKSTLLr~iaGl~~ 66 (355)
T 1z47_A 42 EMVGLLGPSGSGKTTILRLIAGLER 66 (355)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Confidence 4578999999999999999998653
No 353
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.47 E-value=0.044 Score=54.61 Aligned_cols=26 Identities=31% Similarity=0.381 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||+|||||||.+.||.-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (359)
T 2yyz_A 29 GEFVALLGPSGCGKTTTLLMLAGIYK 54 (359)
T ss_dssp TCEEEEECSTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHCCCC
Confidence 34578999999999999999998653
No 354
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.45 E-value=0.044 Score=54.67 Aligned_cols=26 Identities=31% Similarity=0.516 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|||||||.+.||.-..
T Consensus 29 Ge~~~llGpnGsGKSTLLr~iaGl~~ 54 (362)
T 2it1_A 29 GEFMALLGPSGSGKSTLLYTIAGIYK 54 (362)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCchHHHHHHHHhcCCC
Confidence 34578999999999999999998653
No 355
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.44 E-value=0.044 Score=46.82 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 356
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.43 E-value=0.037 Score=53.02 Aligned_cols=26 Identities=19% Similarity=0.244 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||+++|+....
T Consensus 34 Ge~~~iiGpnGsGKSTLl~~l~Gl~~ 59 (275)
T 3gfo_A 34 GEVTAILGGNGVGKSTLFQNFNGILK 59 (275)
T ss_dssp TSEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHHcCCC
Confidence 34588999999999999999998653
No 357
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.41 E-value=0.038 Score=52.13 Aligned_cols=26 Identities=35% Similarity=0.498 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
...+.|.||.|+|||||.+.++....
T Consensus 26 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 51 (249)
T 2qi9_C 26 GEILHLVGPNGAGKSTLLARMAGMTS 51 (249)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998654
No 358
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.41 E-value=0.04 Score=52.22 Aligned_cols=26 Identities=27% Similarity=0.415 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||+++|+....
T Consensus 41 Gei~~l~G~NGsGKSTLlk~l~Gl~~ 66 (256)
T 1vpl_A 41 GEIFGLIGPNGAGKTTTLRIISTLIK 66 (256)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhcCCC
Confidence 34688999999999999999998653
No 359
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.40 E-value=0.045 Score=54.91 Aligned_cols=26 Identities=27% Similarity=0.509 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||+|||||||.++||.-..
T Consensus 29 Ge~~~llGpsGsGKSTLLr~iaGl~~ 54 (381)
T 3rlf_A 29 GEFVVFVGPSGCGKSTLLRMIAGLET 54 (381)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEEcCCCchHHHHHHHHHcCCC
Confidence 34578999999999999999998653
No 360
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.39 E-value=0.041 Score=52.44 Aligned_cols=26 Identities=35% Similarity=0.478 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||++.|+....
T Consensus 33 Ge~~~liG~nGsGKSTLl~~i~Gl~~ 58 (266)
T 2yz2_A 33 GECLLVAGNTGSGKSTLLQIVAGLIE 58 (266)
T ss_dssp TCEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 44688999999999999999998653
No 361
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.37 E-value=0.039 Score=52.62 Aligned_cols=25 Identities=24% Similarity=0.460 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||.|+|||||+++|+...
T Consensus 37 Ge~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 37 GEMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp TCEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhcCC
Confidence 3458899999999999999999865
No 362
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.36 E-value=0.046 Score=46.97 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
-.|++.|++|+|||+|++++....
T Consensus 7 ~~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 7 LKVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHSC
T ss_pred eEEEEECcCCCCHHHHHHHHHcCC
Confidence 469999999999999999998753
No 363
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.34 E-value=0.043 Score=47.46 Aligned_cols=23 Identities=43% Similarity=0.653 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|+||+|||+|++++...
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~~ 27 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAGK 27 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHCC
T ss_pred EEEEEECCCCccHHHHHHHHhcC
Confidence 46999999999999999999753
No 364
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.34 E-value=0.046 Score=47.46 Aligned_cols=23 Identities=26% Similarity=0.433 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 365
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.34 E-value=0.047 Score=54.68 Aligned_cols=26 Identities=35% Similarity=0.553 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|||||||.++||.-..
T Consensus 37 Ge~~~llGpnGsGKSTLLr~iaGl~~ 62 (372)
T 1v43_A 37 GEFLVLLGPSGCGKTTTLRMIAGLEE 62 (372)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCChHHHHHHHHHcCCC
Confidence 34578999999999999999998653
No 366
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.31 E-value=0.042 Score=50.04 Aligned_cols=25 Identities=24% Similarity=0.393 Sum_probs=22.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..++|.|++|+|||+|+..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 5789999999999999999998753
No 367
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.27 E-value=0.048 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.268 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 7 FKVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 368
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=93.27 E-value=0.077 Score=55.26 Aligned_cols=37 Identities=8% Similarity=-0.035 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
.+..-++|.|+||+|||+|+..+|... +.+++.++..
T Consensus 240 ~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E 280 (503)
T 1q57_A 240 RGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLE 280 (503)
T ss_dssp CTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESS
T ss_pred CCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEecc
Confidence 445568999999999999999998765 4466666543
No 369
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.25 E-value=0.048 Score=47.42 Aligned_cols=24 Identities=25% Similarity=0.457 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|++.|++|+|||+|++.+...
T Consensus 8 ~~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 8 ILKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 370
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.23 E-value=0.046 Score=46.96 Aligned_cols=23 Identities=30% Similarity=0.489 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|+.++...
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 4 MKILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 35899999999999999999864
No 371
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.19 E-value=0.039 Score=54.74 Aligned_cols=26 Identities=27% Similarity=0.543 Sum_probs=22.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|||||||.+.||.-..
T Consensus 26 Ge~~~llGpnGsGKSTLLr~iaGl~~ 51 (348)
T 3d31_A 26 GEYFVILGPTGAGKTLFLELIAGFHV 51 (348)
T ss_dssp TCEEEEECCCTHHHHHHHHHHHTSSC
T ss_pred CCEEEEECCCCccHHHHHHHHHcCCC
Confidence 34578999999999999999998653
No 372
>2a9u_A Ubiquitin carboxyl-terminal hydrolase 8; coil-COIL, protease, SH3-binding, thiol protease, UBL conjugation pathway, structural genomics; 2.10A {Homo sapiens} SCOP: a.118.23.1
Probab=93.19 E-value=0.38 Score=41.19 Aligned_cols=79 Identities=13% Similarity=0.125 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhhCCChHHHHHHHHHHHHHHHHHcCCC-CC---CCCchh-hhHHHHHHHHHHHHHHHHHHH
Q 012000 49 KLKGYFELAKEEIAKAVRAEEWGLVDDAIIHYKNAQRILTEASSTP-VP---SYISTS-EHEKVKSYRQKISKWQSQVSD 123 (473)
Q Consensus 49 ~~k~~~~~A~~~i~~Av~~D~~g~~~~Al~~Y~~~i~~l~~~~~~~-~~---~~~~~~-~~~k~~~y~~raek~k~~i~~ 123 (473)
.++.|+.-|..++.+|-.....|+.+.|+.+|.+-+.++....+.+ .. ...+.. ....+..-++++|+++..+.+
T Consensus 34 pl~~y~rsa~~L~r~A~~y~~EGd~E~AYilymRy~~L~~kIpkHpdyk~~~~~~k~~l~k~~~~~vl~~lE~LK~~L~~ 113 (144)
T 2a9u_A 34 STKSYVHSALKIFKTAEECRLDRDEERAYVLYMKYVTVYNLIKKRPDFKQQQDYFHSILGPGNIKKAVEEAERLSESLKL 113 (144)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTTSHHHHHTHHHHHHHHCHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhcCcchhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 4568999999999999999999999999999999999985433322 00 011112 234456778999999999988
Q ss_pred HHHH
Q 012000 124 RLQA 127 (473)
Q Consensus 124 rl~~ 127 (473)
|.+.
T Consensus 114 rYe~ 117 (144)
T 2a9u_A 114 RYEE 117 (144)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8766
No 373
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.18 E-value=0.043 Score=52.71 Aligned_cols=26 Identities=27% Similarity=0.442 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||++.|+....
T Consensus 47 Ge~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 47 GDKWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp TCEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Confidence 34588999999999999999998653
No 374
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.18 E-value=0.068 Score=46.37 Aligned_cols=23 Identities=26% Similarity=0.374 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|+|.|++|+|||+|++++..
T Consensus 8 ~~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 8 PPVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CCEEEEESCTTTTHHHHHHHHHT
T ss_pred CCEEEEECCCCCCHHHHHHHHhC
Confidence 45799999999999999999976
No 375
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=93.17 E-value=0.12 Score=52.86 Aligned_cols=37 Identities=27% Similarity=0.329 Sum_probs=29.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc----CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES----QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~----~~~~~~v~~~ 283 (473)
.+++.|++.|++|+||||++-.+|..+ |..+..+++.
T Consensus 98 ~~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D 138 (433)
T 2xxa_A 98 QPPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSAD 138 (433)
T ss_dssp SSSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECC
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecC
Confidence 346788999999999999999988654 6677776655
No 376
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.15 E-value=0.05 Score=54.49 Aligned_cols=24 Identities=33% Similarity=0.566 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-+.|.||.|||||||.+.||.-.
T Consensus 30 e~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 30 EFMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp CEEEEECSTTSSHHHHHHHHHTSS
T ss_pred CEEEEECCCCcHHHHHHHHHHcCC
Confidence 457899999999999999999865
No 377
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.14 E-value=0.052 Score=46.52 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 7 ~~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 7 FKLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 378
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.14 E-value=0.044 Score=51.83 Aligned_cols=26 Identities=23% Similarity=0.322 Sum_probs=22.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..-+.|.||.|+|||||.+.++....
T Consensus 31 Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 56 (253)
T 2nq2_C 31 GDILAVLGQNGCGKSTLLDLLLGIHR 56 (253)
T ss_dssp TCEEEEECCSSSSHHHHHHHHTTSSC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 34588999999999999999998653
No 379
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.11 E-value=0.053 Score=46.38 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 4 ~ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 4 YKLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999864
No 380
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=93.09 E-value=0.1 Score=51.51 Aligned_cols=36 Identities=17% Similarity=0.118 Sum_probs=27.8
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
.+..-++|.|+||+|||+|+..+|..+ +.++..++.
T Consensus 44 ~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 44 NKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 344568999999999999999998764 556665554
No 381
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.09 E-value=0.05 Score=46.78 Aligned_cols=21 Identities=33% Similarity=0.574 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~ 271 (473)
-|+|.|+||+|||+|++++..
T Consensus 4 ki~ivG~~~~GKSsli~~l~~ 24 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFGG 24 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999999963
No 382
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.08 E-value=0.048 Score=50.14 Aligned_cols=24 Identities=25% Similarity=0.343 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-|.|.|++|+||||+++.++..+
T Consensus 4 ~~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 4 KYIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 458899999999999999999876
No 383
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.05 E-value=0.053 Score=47.63 Aligned_cols=23 Identities=26% Similarity=0.326 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999863
No 384
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.04 E-value=0.051 Score=46.67 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=20.0
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~ 271 (473)
..|++.|++|+|||+|++++..
T Consensus 4 ~~i~v~G~~~~GKssli~~l~~ 25 (172)
T 2erx_A 4 YRVAVFGAGGVGKSSLVLRFVK 25 (172)
T ss_dssp EEEEEECCTTSSHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHc
Confidence 3589999999999999999986
No 385
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.03 E-value=0.056 Score=46.25 Aligned_cols=22 Identities=23% Similarity=0.332 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
.|++.|++|+|||+|++++...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 386
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=92.99 E-value=0.07 Score=45.88 Aligned_cols=24 Identities=25% Similarity=0.407 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|++.|++|+|||+|+.++...
T Consensus 7 ~~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 7 EMRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 456999999999999999999763
No 387
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=92.96 E-value=0.054 Score=47.40 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..-++|.|+||+|||+|.++++..
T Consensus 4 ~~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 4 GMKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999864
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=92.93 E-value=0.03 Score=55.20 Aligned_cols=25 Identities=24% Similarity=0.444 Sum_probs=22.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..++|.||+|+|||||+++++....
T Consensus 172 ~~v~i~G~~GsGKTTll~~l~g~~~ 196 (330)
T 2pt7_A 172 KNVIVCGGTGSGKTTYIKSIMEFIP 196 (330)
T ss_dssp CCEEEEESTTSCHHHHHHHGGGGSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 4699999999999999999998763
No 389
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=92.93 E-value=0.054 Score=47.65 Aligned_cols=23 Identities=30% Similarity=0.527 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.-++|.|++|+|||+|+++++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999863
No 390
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=92.92 E-value=0.048 Score=46.76 Aligned_cols=21 Identities=43% Similarity=0.786 Sum_probs=19.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~ 271 (473)
-|+|.|+||+|||+|++++..
T Consensus 4 ki~~vG~~~~GKSsli~~l~~ 24 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFGG 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHcC
Confidence 589999999999999999863
No 391
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=92.89 E-value=0.059 Score=49.84 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=23.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
..-+.|.||.|+||||+++.|+.. +..+.
T Consensus 20 g~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 20 PFTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 345789999999999999999987 44433
No 392
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.88 E-value=0.055 Score=46.90 Aligned_cols=23 Identities=26% Similarity=0.340 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46899999999999999999863
No 393
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=92.86 E-value=0.094 Score=59.11 Aligned_cols=43 Identities=28% Similarity=0.335 Sum_probs=34.8
Q ss_pred cChHHHHHHHHHHHhchhcchhhhhcCCCCCceEEEEcCCCCcHHHHHHHHHHH
Q 012000 219 AGLEKAKQALMEMVILPAKRRDLFTGLRRPARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 219 vGl~~~k~~L~e~v~~p~~~~~~~~~~~~~~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
+|.+..++.|.+.+... ...+-+.|+||+|.|||+||+.+++.
T Consensus 131 VGRe~eLeeL~elL~~~-----------d~~RVV~IvGmGGIGKTTLAk~Vy~d 173 (1221)
T 1vt4_I 131 VSRLQPYLKLRQALLEL-----------RPAKNVLIDGVLGSGKTWVALDVCLS 173 (1221)
T ss_dssp CCCHHHHHHHHHHHHHC-----------CSSCEEEECCSTTSSHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHhcc-----------CCCeEEEEEcCCCccHHHHHHHHHHh
Confidence 89999999998887410 12357889999999999999999863
No 394
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=92.85 E-value=0.044 Score=52.13 Aligned_cols=25 Identities=32% Similarity=0.658 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||.|+|||||.+.++...
T Consensus 30 Ge~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 30 GEKVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp SSEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEEECCCCCCHHHHHHHHhCCC
Confidence 3458899999999999999999765
No 395
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.84 E-value=0.1 Score=52.41 Aligned_cols=35 Identities=17% Similarity=0.329 Sum_probs=28.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
..++++.||+|+|||++++.++..+ +..++.++..
T Consensus 35 ~~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~ 72 (392)
T 4ag6_A 35 NSNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPE 72 (392)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESS
T ss_pred cCceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCC
Confidence 4589999999999999999998754 6677777654
No 396
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=92.84 E-value=0.1 Score=51.70 Aligned_cols=33 Identities=21% Similarity=0.252 Sum_probs=25.6
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
..-|.|.|+||+|||+|+..++..+ +..+..++
T Consensus 79 ~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 79 AHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 4568999999999999999998775 44444433
No 397
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.83 E-value=0.054 Score=47.05 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~~ 29 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQE 29 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHGG
T ss_pred EEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999753
No 398
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.82 E-value=0.061 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 399
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.76 E-value=0.062 Score=47.59 Aligned_cols=23 Identities=30% Similarity=0.421 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 26 FKVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 400
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=92.76 E-value=0.062 Score=47.39 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|+.+++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46899999999999999999874
No 401
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.75 E-value=0.061 Score=47.53 Aligned_cols=24 Identities=17% Similarity=0.344 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.-.|+|.|++|+|||+|+.++...
T Consensus 7 ~~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 7 SYKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp SEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346999999999999999999875
No 402
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.75 E-value=0.058 Score=47.51 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46899999999999999999874
No 403
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.73 E-value=0.091 Score=47.89 Aligned_cols=25 Identities=24% Similarity=0.420 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-++|.|++|+|||+|+..++...
T Consensus 38 ~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 38 VVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3568899999999999999999875
No 404
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.73 E-value=0.064 Score=46.84 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 46999999999999999999864
No 405
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=92.72 E-value=0.061 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.368 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||+|||||||.++|+...
T Consensus 47 Ge~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 47 GQRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp TCEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CCEEEEECCCCChHHHHHHHHhCCC
Confidence 4568899999999999999999754
No 406
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.69 E-value=0.065 Score=46.66 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 407
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.69 E-value=0.041 Score=54.71 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||.|||||||.+.||.-.
T Consensus 31 Ge~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 31 GERFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp TCEEEEECSCHHHHHHHHHHHHTSS
T ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Confidence 3457899999999999999999865
No 408
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.67 E-value=0.06 Score=46.72 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999875
No 409
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.63 E-value=0.059 Score=46.77 Aligned_cols=22 Identities=36% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~ 271 (473)
..|+|.|++|+|||+|++++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 4699999999999999999864
No 410
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=92.63 E-value=0.064 Score=46.23 Aligned_cols=24 Identities=29% Similarity=0.361 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-.+|+||.|+|||++..||.--+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 346899999999999999998654
No 411
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.61 E-value=0.062 Score=47.07 Aligned_cols=23 Identities=26% Similarity=0.463 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 11 ~ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 11 FKFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 412
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.54 E-value=0.087 Score=51.36 Aligned_cols=29 Identities=24% Similarity=0.363 Sum_probs=24.5
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcCCcEE
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQATFF 278 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~~~~~ 278 (473)
..+++|.|++|+|||++|.++... |..++
T Consensus 144 g~~vl~~G~sG~GKSt~a~~l~~~-g~~lv 172 (314)
T 1ko7_A 144 GVGVLITGDSGIGKSETALELIKR-GHRLV 172 (314)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHHT-TCEEE
T ss_pred CEEEEEEeCCCCCHHHHHHHHHhc-CCcee
Confidence 578999999999999999999875 54444
No 413
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=92.53 E-value=0.068 Score=47.14 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..|+|.|++|+|||+|++.+....
T Consensus 15 ~ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 15 FKIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHTS
T ss_pred cEEEEECCCCCCHHHHHHHHHhhc
Confidence 469999999999999999888754
No 414
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=92.52 E-value=0.12 Score=49.84 Aligned_cols=35 Identities=29% Similarity=0.206 Sum_probs=27.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEec
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSA 282 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~ 282 (473)
++..+.+.|++|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 45678889999999999999998765 555555554
No 415
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.48 E-value=0.06 Score=51.98 Aligned_cols=26 Identities=31% Similarity=0.364 Sum_probs=22.3
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+..-+.|.||.|+|||||++.|+...
T Consensus 63 ~Ge~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 63 RGQLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCCcHHHHHHHHhcCC
Confidence 34568899999999999999999865
No 416
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=92.46 E-value=0.078 Score=52.30 Aligned_cols=25 Identities=32% Similarity=0.333 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||||+|||||.++++..+
T Consensus 55 g~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 55 AIRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHhh
Confidence 3458899999999999999999764
No 417
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.46 E-value=0.072 Score=46.57 Aligned_cols=24 Identities=25% Similarity=0.365 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|++++...
T Consensus 18 ~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 18 TYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 346899999999999999999864
No 418
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=92.44 E-value=0.13 Score=48.07 Aligned_cols=33 Identities=21% Similarity=0.256 Sum_probs=26.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc--CCcEEEEe
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES--QATFFNVS 281 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~--~~~~~~v~ 281 (473)
...+++.|.+|+||||++..+|..+ +..+..++
T Consensus 14 ~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 14 SMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred eEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 4568899999999999999998765 55555554
No 419
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.41 E-value=0.074 Score=46.21 Aligned_cols=23 Identities=30% Similarity=0.384 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 420
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.41 E-value=0.098 Score=51.85 Aligned_cols=28 Identities=21% Similarity=0.388 Sum_probs=24.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
.-+.|.||+|+|||||++.|+.......
T Consensus 72 q~~gIiG~nGaGKTTLl~~I~g~~~~~~ 99 (347)
T 2obl_A 72 QRIGIFAGSGVGKSTLLGMICNGASADI 99 (347)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCSE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCE
Confidence 3588999999999999999999876543
No 421
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=92.37 E-value=0.12 Score=53.12 Aligned_cols=37 Identities=22% Similarity=0.144 Sum_probs=28.5
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEecC
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASES---QATFFNVSAS 283 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~~~ 283 (473)
.+..-++|.|+||+|||+||..+|... +.+++.++..
T Consensus 195 ~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlE 234 (444)
T 3bgw_A 195 KRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLE 234 (444)
T ss_dssp CSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSS
T ss_pred CCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECC
Confidence 444569999999999999999987754 5566666543
No 422
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.37 E-value=0.076 Score=46.37 Aligned_cols=23 Identities=22% Similarity=0.239 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
-.|+|.|++|+|||+|++++...
T Consensus 6 ~~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 6 IKCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 35899999999999999999863
No 423
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.37 E-value=0.075 Score=46.93 Aligned_cols=23 Identities=35% Similarity=0.368 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 23 ~ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 23 FKLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 424
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.26 E-value=0.075 Score=46.98 Aligned_cols=23 Identities=39% Similarity=0.517 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 46999999999999999999874
No 425
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.25 E-value=0.073 Score=47.34 Aligned_cols=24 Identities=29% Similarity=0.448 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|++.|++|+|||+|++++...
T Consensus 23 ~~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 23 HGKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp -CEEEEEESTTSSHHHHHHHHHHS
T ss_pred ccEEEEECCCCCCHHHHHHHHhcC
Confidence 346999999999999999999873
No 426
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.22 E-value=0.067 Score=46.95 Aligned_cols=22 Identities=18% Similarity=0.360 Sum_probs=19.8
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
.|++.|++|+|||+|+.++...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 4899999999999999999853
No 427
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.21 E-value=0.08 Score=46.85 Aligned_cols=23 Identities=17% Similarity=0.216 Sum_probs=20.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
--|+|.|++|+|||+|++.+...
T Consensus 21 ~ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 21 LKVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 45999999999999999888764
No 428
>1knx_A Probable HPR(Ser) kinase/phosphatase; HPR kinase, HPR kinase/phosphatase, HPRK/P, P-loop, walker A BOX, catabolite repression; 2.50A {Mycoplasma pneumoniae} SCOP: c.98.2.1 c.91.1.2
Probab=92.21 E-value=0.088 Score=51.27 Aligned_cols=31 Identities=29% Similarity=0.374 Sum_probs=24.8
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcCCcEEE
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQATFFN 279 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~~~~~~ 279 (473)
...|+||.|++|+|||++|.++.. -|..++.
T Consensus 146 ~g~gvli~G~sG~GKStlal~l~~-~G~~lv~ 176 (312)
T 1knx_A 146 FGVGVLLTGRSGIGKSECALDLIN-KNHLFVG 176 (312)
T ss_dssp TTEEEEEEESSSSSHHHHHHHHHT-TTCEEEE
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHH-cCCEEEe
Confidence 357999999999999999998865 4555543
No 429
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.18 E-value=0.082 Score=46.01 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 430
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.18 E-value=0.084 Score=46.65 Aligned_cols=24 Identities=17% Similarity=0.279 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|+.++...
T Consensus 23 ~~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 23 LPEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CCEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 431
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.17 E-value=0.081 Score=47.16 Aligned_cols=23 Identities=22% Similarity=0.434 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 432
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.14 E-value=0.082 Score=46.80 Aligned_cols=23 Identities=26% Similarity=0.462 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
--|+|.|++|+|||+|++.+...
T Consensus 22 ~ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 22 VNLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCcHHHHHHHHHhC
Confidence 35999999999999999999864
No 433
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.11 E-value=0.081 Score=46.84 Aligned_cols=24 Identities=29% Similarity=0.357 Sum_probs=21.2
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
-.|+|.|++|+|||+|++.+....
T Consensus 24 ~ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 24 FKLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred eEEEEECCCCcCHHHHHHHHhcCC
Confidence 359999999999999999998754
No 434
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.11 E-value=0.069 Score=55.05 Aligned_cols=25 Identities=24% Similarity=0.430 Sum_probs=22.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+.|.||.|+|||||++.|+...
T Consensus 138 Ge~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 138 GPRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CCEEEEECCCCCCHHHHHHHHhCcc
Confidence 3468999999999999999999865
No 435
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.08 E-value=0.11 Score=53.22 Aligned_cols=27 Identities=30% Similarity=0.421 Sum_probs=23.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCCc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQAT 276 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~~ 276 (473)
.-+.|.||+|||||||++.|+......
T Consensus 158 q~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 158 QRMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcccCCC
Confidence 458899999999999999999987544
No 436
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.05 E-value=0.078 Score=49.75 Aligned_cols=27 Identities=26% Similarity=0.213 Sum_probs=24.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHHcCCcE
Q 012000 251 GLLLFGPPGNGKTMLAKAVASESQATF 277 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e~~~~~ 277 (473)
-|.|+|++|||||++++.++..+|.+.
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 377999999999999999999888665
No 437
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=92.05 E-value=0.079 Score=50.25 Aligned_cols=23 Identities=30% Similarity=0.482 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|.|.|+||+|||+|.+++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 46899999999999999999754
No 438
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.05 E-value=0.039 Score=49.67 Aligned_cols=24 Identities=13% Similarity=0.248 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..-+.|.|++|+|||+|+++++..
T Consensus 26 ~~~v~lvG~~g~GKSTLl~~l~g~ 49 (210)
T 1pui_A 26 GIEVAFAGRSNAGKSSALNTLTNQ 49 (210)
T ss_dssp SEEEEEEECTTSSHHHHHTTTCCC
T ss_pred CcEEEEECCCCCCHHHHHHHHhCC
Confidence 345899999999999999998743
No 439
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.03 E-value=0.081 Score=46.14 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=20.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~ 271 (473)
..|+|.|++|+|||+|++++..
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECcCCCCHHHHHHHHHc
Confidence 4699999999999999999985
No 440
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=92.02 E-value=0.079 Score=46.86 Aligned_cols=23 Identities=35% Similarity=0.391 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 23 ~ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 23 MELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999864
No 441
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.02 E-value=0.086 Score=47.11 Aligned_cols=24 Identities=25% Similarity=0.439 Sum_probs=21.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|++++...
T Consensus 8 ~~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 8 LLKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECcCCCCHHHHHHHHHcC
Confidence 356999999999999999999874
No 442
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.01 E-value=0.08 Score=46.99 Aligned_cols=23 Identities=22% Similarity=0.377 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 24 ~ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 24 LKVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 443
>2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A*
Probab=91.98 E-value=0.089 Score=46.58 Aligned_cols=23 Identities=22% Similarity=0.378 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 22 ~ki~v~G~~~~GKSsli~~l~~~ 44 (191)
T 2a5j_A 22 FKYIIIGDTGVGKSCLLLQFTDK 44 (191)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999864
No 444
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=91.98 E-value=0.061 Score=52.37 Aligned_cols=27 Identities=30% Similarity=0.550 Sum_probs=23.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
+...+.|.||.|+|||||++.|+..+.
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~~ 105 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFYD 105 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSSC
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCCC
Confidence 345688999999999999999998663
No 445
>2gks_A Bifunctional SAT/APS kinase; transferase, sulfurylase; HET: ADP; 2.31A {Aquifex aeolicus}
Probab=91.96 E-value=0.083 Score=55.69 Aligned_cols=34 Identities=24% Similarity=0.253 Sum_probs=26.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHcC---CcEEEEec
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASESQ---ATFFNVSA 282 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~~---~~~~~v~~ 282 (473)
+.-|+|.|+||+||||+++.++..++ .++..++.
T Consensus 372 ~~~I~l~G~~GsGKSTia~~La~~L~~~G~~~~~ld~ 408 (546)
T 2gks_A 372 GFCVWLTGLPCAGKSTIAEILATMLQARGRKVTLLDG 408 (546)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECH
T ss_pred ceEEEccCCCCCCHHHHHHHHHHHhhhcCCeEEEECc
Confidence 35688999999999999999998764 45555553
No 446
>2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens}
Probab=91.95 E-value=0.089 Score=46.96 Aligned_cols=24 Identities=21% Similarity=0.311 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|+.++...
T Consensus 28 ~~ki~v~G~~~~GKSsli~~l~~~ 51 (199)
T 2p5s_A 28 AYKIVLAGDAAVGKSSFLMRLCKN 51 (199)
T ss_dssp CEEEEEESSTTSSHHHHHHHHHHC
T ss_pred CeEEEEECcCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 447
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=91.95 E-value=0.16 Score=46.30 Aligned_cols=31 Identities=23% Similarity=0.275 Sum_probs=24.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc--CCcEEEE
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES--QATFFNV 280 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~--~~~~~~v 280 (473)
+-|.|-|+.|+||||+++.++..+ +.+++..
T Consensus 3 kFI~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~ 35 (205)
T 4hlc_A 3 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIMT 35 (205)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEEE
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHCCCCEEEe
Confidence 347889999999999999999987 4455444
No 448
>3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A*
Probab=91.93 E-value=0.09 Score=46.61 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 24 ~ki~~vG~~~~GKSsl~~~l~~~ 46 (194)
T 3reg_A 24 LKIVVVGDGAVGKTCLLLAFSKG 46 (194)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 449
>1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B*
Probab=91.92 E-value=0.09 Score=46.39 Aligned_cols=23 Identities=22% Similarity=0.332 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 21 ~ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 21 FKIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999763
No 450
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.91 E-value=0.1 Score=46.33 Aligned_cols=24 Identities=29% Similarity=0.472 Sum_probs=21.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|++.+...
T Consensus 28 ~~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 28 EVKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHS
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999874
No 451
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=91.89 E-value=0.068 Score=46.53 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++.+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999874
No 452
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=91.89 E-value=0.078 Score=46.69 Aligned_cols=23 Identities=22% Similarity=0.319 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 24 GEVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 46999999999999999999764
No 453
>3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.84 E-value=0.092 Score=47.12 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|+.++...
T Consensus 20 ~~~i~v~G~~~~GKSsli~~l~~~ 43 (213)
T 3cph_A 20 IMKILLIGDSGVGKSCLLVRFVED 43 (213)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHhC
Confidence 356999999999999999999864
No 454
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=91.82 E-value=0.099 Score=52.13 Aligned_cols=25 Identities=24% Similarity=0.335 Sum_probs=21.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
..-+-|.||.|+|||||+++|+.-.
T Consensus 54 Gei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 54 GQIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CCEEEEEcCCCchHHHHHHHHhcCC
Confidence 3457899999999999999999865
No 455
>1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8
Probab=91.81 E-value=0.089 Score=46.96 Aligned_cols=23 Identities=26% Similarity=0.333 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (203)
T 1zbd_A 9 FKILIIGNSSVGKTSFLFRYADD 31 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999764
No 456
>2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A*
Probab=91.80 E-value=0.087 Score=47.20 Aligned_cols=23 Identities=35% Similarity=0.495 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (206)
T 2bcg_Y 9 FKLLLIGNSGVGKSCLLLRFSDD 31 (206)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHC
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 457
>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}
Probab=91.78 E-value=0.14 Score=49.70 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
.-+.|.||+|+|||||+++|+ ..
T Consensus 166 ~i~~l~G~sG~GKSTLln~l~-~~ 188 (302)
T 2yv5_A 166 FICILAGPSGVGKSSILSRLT-GE 188 (302)
T ss_dssp CEEEEECSTTSSHHHHHHHHH-SC
T ss_pred cEEEEECCCCCCHHHHHHHHH-Hh
Confidence 457899999999999999999 64
No 458
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.73 E-value=0.091 Score=55.07 Aligned_cols=26 Identities=27% Similarity=0.424 Sum_probs=22.2
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+...++|.||||+|||+|++.++...
T Consensus 280 ~G~i~~i~G~~GsGKSTLl~~l~g~~ 305 (525)
T 1tf7_A 280 KDSIILATGATGTGKTLLVSRFVENA 305 (525)
T ss_dssp SSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999998754
No 459
>1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A*
Probab=91.71 E-value=0.1 Score=45.77 Aligned_cols=24 Identities=33% Similarity=0.462 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|++.|++|+|||+|++++...
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~ 41 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGE 41 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcC
Confidence 467999999999999999999753
No 460
>1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8
Probab=91.67 E-value=0.092 Score=47.48 Aligned_cols=23 Identities=26% Similarity=0.394 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++.+...
T Consensus 29 ~ki~vvG~~~vGKSsLi~~l~~~ 51 (205)
T 1gwn_A 29 CKIVVVGDSQCGKTALLHVFAKD 51 (205)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 461
>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V
Probab=91.66 E-value=0.1 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.359 Sum_probs=21.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
..+.|.||+|+|||||+++|+....
T Consensus 216 ~~~~lvG~sG~GKSTLln~L~g~~~ 240 (358)
T 2rcn_A 216 RISIFAGQSGVGKSSLLNALLGLQN 240 (358)
T ss_dssp SEEEEECCTTSSHHHHHHHHHCCSS
T ss_pred CEEEEECCCCccHHHHHHHHhcccc
Confidence 4688999999999999999997543
No 462
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=91.64 E-value=0.17 Score=45.64 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=24.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
.-.+++||+|+|||+.+..++..+ +..++.+.
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k 43 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFK 43 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 457889999999999998888765 55555543
No 463
>1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A*
Probab=91.61 E-value=0.085 Score=46.42 Aligned_cols=24 Identities=46% Similarity=0.570 Sum_probs=21.0
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..-|+|.|++|+|||+|++++...
T Consensus 16 ~~ki~ivG~~~vGKSsL~~~l~~~ 39 (181)
T 1fzq_A 16 EVRILLLGLDNAGKTTLLKQLASE 39 (181)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCCS
T ss_pred ceEEEEECCCCCCHHHHHHHHhcC
Confidence 356999999999999999999754
No 464
>1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=91.61 E-value=0.073 Score=46.46 Aligned_cols=24 Identities=25% Similarity=0.391 Sum_probs=20.7
Q ss_pred CCceEEEEcCCCCcHHHHHHHHHH
Q 012000 248 PARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 248 ~~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
....|++.|++|+|||+|+.++..
T Consensus 17 ~~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 17 KELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp SCEEEEEEEETTSSHHHHHHHTCC
T ss_pred CccEEEEECCCCCCHHHHHHHHhc
Confidence 346799999999999999998863
No 465
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=91.59 E-value=0.11 Score=51.39 Aligned_cols=25 Identities=32% Similarity=0.433 Sum_probs=21.7
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...+.|.|+||+|||||.++++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468899999999999999998754
No 466
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=91.58 E-value=0.35 Score=42.21 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=38.7
Q ss_pred HHHHHHHHHHHHHHHHhhhC---------------------------CChHHHHHHHHHHHHHHHHHcCCCCC
Q 012000 51 KGYFELAKEEIAKAVRAEEW---------------------------GLVDDAIIHYKNAQRILTEASSTPVP 96 (473)
Q Consensus 51 k~~~~~A~~~i~~Av~~D~~---------------------------g~~~~Al~~Y~~~i~~l~~~~~~~~~ 96 (473)
.+-|+.|++.+.+|++.+.. |+|++|+.+|.++|++|...+...++
T Consensus 24 ~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 24 AGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred CCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 34578888888888888865 99999999999999999999876553
No 467
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=91.55 E-value=0.16 Score=46.19 Aligned_cols=41 Identities=24% Similarity=0.230 Sum_probs=31.0
Q ss_pred CCCceEEEEcCCCCcHHHHHHHHHHHcCCc-EEEEecCccch
Q 012000 247 RPARGLLLFGPPGNGKTMLAKAVASESQAT-FFNVSASSLTS 287 (473)
Q Consensus 247 ~~~~~iLL~GPpGtGKT~La~aiA~e~~~~-~~~v~~~~l~~ 287 (473)
.|..-|+|+|.||+||+++|..+.+.++.. +..++.++.+.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~~~~~vv~msD~iK 50 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGADVCAVLRLSGPLK 50 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCTTTEEEECTHHHHH
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCCCCceEEEccHHHH
Confidence 456778999999999999999998877642 44456555443
No 468
>2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.52 E-value=0.098 Score=47.18 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=20.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 27 ~ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 27 FKIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 46899999999999999999864
No 469
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=91.51 E-value=0.099 Score=54.76 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=18.8
Q ss_pred CceEEEEcCCCCcHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAV 269 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~ai 269 (473)
...++|.||+|||||||++.+
T Consensus 39 Ge~~~l~G~nGsGKSTL~~~~ 59 (525)
T 1tf7_A 39 GRSTLVSGTSGTGKTLFSIQF 59 (525)
T ss_dssp TSEEEEEESTTSSHHHHHHHH
T ss_pred CeEEEEEcCCCCCHHHHHHHH
Confidence 457999999999999999994
No 470
>2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.50 E-value=0.13 Score=45.59 Aligned_cols=24 Identities=25% Similarity=0.415 Sum_probs=21.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e 272 (473)
...|+|.|++|+|||+|++++...
T Consensus 8 ~~ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 8 DYRVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp CEEEEEEECTTSSHHHHHHHHHHS
T ss_pred eeEEEEECCCCCcHHHHHHHHHcC
Confidence 356999999999999999999873
No 471
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=91.42 E-value=0.15 Score=51.66 Aligned_cols=22 Identities=18% Similarity=0.391 Sum_probs=20.0
Q ss_pred eEEEEcCCCCcHHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~e 272 (473)
-+.|.||+|+|||||.++|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5779999999999999999983
No 472
>2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2
Probab=91.38 E-value=0.11 Score=46.82 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=20.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 8 ~ki~vvG~~~~GKTsli~~l~~~ 30 (214)
T 2fh5_B 8 RAVLFVGLCDSGKTLLFVRLLTG 30 (214)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999874
No 473
>3hjn_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynth nucleotide-binding, transferase, structural genomics; HET: ADP TYD; 2.10A {Thermotoga maritima}
Probab=91.35 E-value=0.21 Score=45.16 Aligned_cols=30 Identities=17% Similarity=0.152 Sum_probs=24.7
Q ss_pred EEEEcCCCCcHHHHHHHHHHHc---CCcEEEEe
Q 012000 252 LLLFGPPGNGKTMLAKAVASES---QATFFNVS 281 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e~---~~~~~~v~ 281 (473)
|.|-|+.|+||||.++.+++.+ |.+++...
T Consensus 3 I~~EG~DGsGKsTq~~~L~~~L~~~g~~v~~tr 35 (197)
T 3hjn_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKR 35 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 6688999999999999999876 56666554
No 474
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=91.27 E-value=0.11 Score=48.22 Aligned_cols=23 Identities=22% Similarity=0.469 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 46999999999999999999864
No 475
>2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A*
Probab=91.26 E-value=0.066 Score=46.82 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=9.9
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 9 ~ki~v~G~~~~GKssl~~~l~~~ 31 (183)
T 2fu5_C 9 FKLLLIGDSGVGKTCVLFRFSED 31 (183)
T ss_dssp EEEEEECCCCC------------
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999998753
No 476
>2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A*
Probab=91.19 E-value=0.13 Score=45.92 Aligned_cols=23 Identities=35% Similarity=0.496 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
.-|+|.|+||+|||+|...++..
T Consensus 7 ~kv~lvG~~~vGKSsL~~~~~~~ 29 (192)
T 2cjw_A 7 YRVVLIGEQGVGKSTLANIFAGV 29 (192)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 35999999999999999999863
No 477
>2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens}
Probab=91.17 E-value=0.094 Score=53.38 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=19.6
Q ss_pred EEEEcCCCCcHHHHHHHHHHH
Q 012000 252 LLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 252 iLL~GPpGtGKT~La~aiA~e 272 (473)
+.|.||+|+|||||+++|+..
T Consensus 45 vaLvG~nGaGKSTLln~L~G~ 65 (427)
T 2qag_B 45 ILCVGETGLGKSTLMDTLFNT 65 (427)
T ss_dssp EEEECSTTSSSHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhCc
Confidence 789999999999999999875
No 478
>1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A*
Probab=91.12 E-value=0.12 Score=46.29 Aligned_cols=23 Identities=26% Similarity=0.411 Sum_probs=20.2
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|+|.|++|+|||+|++++..
T Consensus 25 ~~ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 25 TGKLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 34699999999999999999964
No 479
>1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=91.12 E-value=0.13 Score=45.28 Aligned_cols=23 Identities=17% Similarity=0.313 Sum_probs=20.8
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|++.|++|+|||+|++++..
T Consensus 16 ~~~i~v~G~~~~GKssl~~~l~~ 38 (187)
T 1zj6_A 16 EHKVIIVGLDNAGKTTILYQFSM 38 (187)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHT
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 45799999999999999999984
No 480
>1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8
Probab=91.11 E-value=0.087 Score=51.01 Aligned_cols=25 Identities=24% Similarity=0.296 Sum_probs=21.5
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQ 274 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~ 274 (473)
.-+.|.||+|+|||||+++|+....
T Consensus 170 eiv~l~G~sG~GKSTll~~l~g~~~ 194 (301)
T 1u0l_A 170 KISTMAGLSGVGKSSLLNAINPGLK 194 (301)
T ss_dssp SEEEEECSTTSSHHHHHHHHSTTCC
T ss_pred CeEEEECCCCCcHHHHHHHhccccc
Confidence 4578999999999999999987653
No 481
>2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens}
Probab=91.08 E-value=0.11 Score=46.54 Aligned_cols=22 Identities=27% Similarity=0.486 Sum_probs=19.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~ 271 (473)
..|+|.|++|+|||+|++++..
T Consensus 26 ~ki~v~G~~~~GKSsLi~~l~~ 47 (200)
T 2o52_A 26 FKFLVIGSAGTGKSCLLHQFIE 47 (200)
T ss_dssp EEEEEEESTTSSHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHh
Confidence 4699999999999999999874
No 482
>2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A*
Probab=91.05 E-value=0.15 Score=45.25 Aligned_cols=23 Identities=22% Similarity=0.302 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|++.|++|+|||+|+..+..
T Consensus 29 ~~ki~v~G~~~vGKSsLi~~l~~ 51 (192)
T 2b6h_A 29 QMRILMVGLDAAGKTTILYKLKL 51 (192)
T ss_dssp CEEEEEEESTTSSHHHHHHHHCS
T ss_pred ccEEEEECCCCCCHHHHHHHHHh
Confidence 45699999999999999999864
No 483
>2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.12 Score=45.77 Aligned_cols=23 Identities=26% Similarity=0.296 Sum_probs=20.8
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 19 ~ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 19 LKCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36899999999999999999875
No 484
>2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=91.01 E-value=0.12 Score=46.56 Aligned_cols=23 Identities=26% Similarity=0.414 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (207)
T 2fv8_A 26 KKLVVVGDGACGKTCLLIVFSKD 48 (207)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred cEEEEECcCCCCHHHHHHHHhcC
Confidence 46999999999999999999874
No 485
>4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927}
Probab=90.99 E-value=0.11 Score=45.97 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.3
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|+|.|++|+|||+|++.+..
T Consensus 17 ~~ki~v~G~~~~GKSsl~~~l~~ 39 (199)
T 4bas_A 17 KLQVVMCGLDNSGKTTIINQVKP 39 (199)
T ss_dssp EEEEEEECCTTSCHHHHHHHHSC
T ss_pred CcEEEEECCCCCCHHHHHHHHhc
Confidence 35699999999999999999864
No 486
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=90.97 E-value=0.27 Score=44.03 Aligned_cols=24 Identities=29% Similarity=0.563 Sum_probs=20.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
+.+++++|+|+|||.++-.++...
T Consensus 49 ~~~li~~~tGsGKT~~~~~~~~~~ 72 (216)
T 3b6e_A 49 KNIIICLPTGSGKTRVAVYIAKDH 72 (216)
T ss_dssp CCEEEECSCHHHHHHHHHHHHHHH
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHH
Confidence 469999999999999988877643
No 487
>2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens}
Probab=90.96 E-value=0.12 Score=45.94 Aligned_cols=23 Identities=26% Similarity=0.289 Sum_probs=20.4
Q ss_pred CceEEEEcCCCCcHHHHHHHHHH
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~ 271 (473)
...|+|.|++|+|||+|++.+..
T Consensus 20 ~~ki~~~G~~~~GKssl~~~l~~ 42 (201)
T 2q3h_A 20 GVKCVLVGDGAVGKTSLVVSYTT 42 (201)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHC
T ss_pred ceEEEEECCCCCCHHHHHHHHHh
Confidence 35699999999999999999974
No 488
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=90.87 E-value=0.12 Score=46.59 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 26 ~ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 26 IKLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEEECcCCCCHHHHHHHHhcC
Confidence 35999999999999999999853
No 489
>3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens}
Probab=90.86 E-value=0.1 Score=46.71 Aligned_cols=22 Identities=32% Similarity=0.499 Sum_probs=19.4
Q ss_pred ceEEEEcCCCCcHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~ 271 (473)
.-|+|.|++|+|||+|++.++.
T Consensus 24 ~ki~vvG~~~vGKSsLi~~l~~ 45 (195)
T 3cbq_A 24 FKVMLVGESGVGKSTLAGTFGG 45 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHTCC
T ss_pred EEEEEECCCCCCHHHHHHHHHh
Confidence 4589999999999999999853
No 490
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=90.82 E-value=0.18 Score=51.31 Aligned_cols=35 Identities=29% Similarity=0.451 Sum_probs=28.1
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHH---cCCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASE---SQATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e---~~~~~~~v~~~ 283 (473)
..|+++.||+|+|||++++.+... .+..++.++..
T Consensus 53 ~~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpk 90 (437)
T 1e9r_A 53 PRHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPN 90 (437)
T ss_dssp GGCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEET
T ss_pred cceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCC
Confidence 468999999999999998877654 36777777754
No 491
>2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ...
Probab=90.82 E-value=0.13 Score=46.09 Aligned_cols=23 Identities=26% Similarity=0.429 Sum_probs=20.7
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|+.++...
T Consensus 26 ~ki~vvG~~~~GKSsli~~l~~~ 48 (201)
T 2gco_A 26 KKLVIVGDGACGKTCLLIVFSKD 48 (201)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 35999999999999999999874
No 492
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=90.80 E-value=0.14 Score=51.28 Aligned_cols=25 Identities=36% Similarity=0.567 Sum_probs=21.9
Q ss_pred CceEEEEcCCCCcHHHHHHHHHHHc
Q 012000 249 ARGLLLFGPPGNGKTMLAKAVASES 273 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT~La~aiA~e~ 273 (473)
...++|+||+|||||+|++.|++..
T Consensus 174 GQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 174 GQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp TCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred CcEEEEecCCCCChhHHHHHHHHHH
Confidence 4569999999999999999998754
No 493
>2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A*
Probab=90.80 E-value=0.11 Score=45.63 Aligned_cols=23 Identities=17% Similarity=0.326 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|++.|++|+|||+|++++...
T Consensus 22 ~~i~v~G~~~~GKSsli~~l~~~ 44 (181)
T 2h17_A 22 HKVIIVGLDNAGKTTILYQFSMN 44 (181)
T ss_dssp EEEEEEEETTSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999853
No 494
>2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens}
Probab=90.77 E-value=0.13 Score=46.18 Aligned_cols=23 Identities=26% Similarity=0.358 Sum_probs=20.3
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++.+...
T Consensus 30 ~ki~vvG~~~vGKSsli~~l~~~ 52 (201)
T 2hup_A 30 FKLVLVGDASVGKTCVVQRFKTG 52 (201)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHhhC
Confidence 35999999999999999999763
No 495
>2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens}
Probab=90.74 E-value=0.12 Score=45.74 Aligned_cols=21 Identities=29% Similarity=0.539 Sum_probs=19.2
Q ss_pred eEEEEcCCCCcHHHHHHHHHH
Q 012000 251 GLLLFGPPGNGKTMLAKAVAS 271 (473)
Q Consensus 251 ~iLL~GPpGtGKT~La~aiA~ 271 (473)
.|+|.|++|+|||+|++++..
T Consensus 28 ki~vvG~~~~GKSsLi~~l~~ 48 (192)
T 2il1_A 28 QVIIIGSRGVGKTSLMERFTD 48 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 599999999999999999864
No 496
>2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A*
Probab=90.72 E-value=0.1 Score=50.56 Aligned_cols=23 Identities=26% Similarity=0.401 Sum_probs=19.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
-.|+|.||+|+|||||++.|+..
T Consensus 19 ~~I~lvG~nG~GKSTLl~~L~g~ 41 (301)
T 2qnr_A 19 FTLMVVGESGLGKSTLINSLFLT 41 (301)
T ss_dssp EEEEEEEETTSSHHHHHHHHHC-
T ss_pred EEEEEECCCCCCHHHHHHHHhCC
Confidence 35799999999999999998753
No 497
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=90.72 E-value=0.22 Score=45.03 Aligned_cols=35 Identities=20% Similarity=0.251 Sum_probs=26.3
Q ss_pred CceEEEEcCCCCcHH-HHHHHHHHH--cCCcEEEEecC
Q 012000 249 ARGLLLFGPPGNGKT-MLAKAVASE--SQATFFNVSAS 283 (473)
Q Consensus 249 ~~~iLL~GPpGtGKT-~La~aiA~e--~~~~~~~v~~~ 283 (473)
.+=.++|||.|+||| .|.+++.+. .+..++.+.+.
T Consensus 20 g~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~ 57 (195)
T 1w4r_A 20 GQIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYA 57 (195)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEET
T ss_pred eEEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccc
Confidence 345789999999999 888888664 36667766543
No 498
>2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana}
Probab=90.61 E-value=0.13 Score=46.17 Aligned_cols=23 Identities=22% Similarity=0.179 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++.+...
T Consensus 10 ~ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 10 IKCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999864
No 499
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=90.58 E-value=0.16 Score=46.15 Aligned_cols=26 Identities=27% Similarity=0.266 Sum_probs=22.1
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHHcCC
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASESQA 275 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e~~~ 275 (473)
.-.+|+||.|+|||++..||.--++.
T Consensus 24 ~~~~I~G~NgsGKStil~ai~~~l~g 49 (203)
T 3qks_A 24 GINLIIGQNGSGKSSLLDAILVGLYW 49 (203)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHT
T ss_pred CeEEEEcCCCCCHHHHHHHHHHHhcC
Confidence 45789999999999999999876654
No 500
>3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae}
Probab=90.54 E-value=0.15 Score=46.54 Aligned_cols=23 Identities=26% Similarity=0.423 Sum_probs=20.6
Q ss_pred ceEEEEcCCCCcHHHHHHHHHHH
Q 012000 250 RGLLLFGPPGNGKTMLAKAVASE 272 (473)
Q Consensus 250 ~~iLL~GPpGtGKT~La~aiA~e 272 (473)
..|+|.|++|+|||+|++++...
T Consensus 14 ~ki~v~G~~~vGKSsli~~l~~~ 36 (223)
T 3cpj_B 14 FKIVLIGDSGVGKSNLLSRFTKN 36 (223)
T ss_dssp EEEEEESCTTSSHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHhcC
Confidence 46899999999999999999864
Done!