Query 012001
Match_columns 473
No_of_seqs 361 out of 3514
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 07:34:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012001.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012001hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4341 F-box protein containi 100.0 1.3E-35 2.9E-40 252.5 13.2 382 12-463 72-459 (483)
2 KOG4341 F-box protein containi 100.0 1.1E-28 2.4E-33 210.5 7.2 298 151-473 139-443 (483)
3 KOG2120 SCF ubiquitin ligase, 99.9 1.2E-26 2.6E-31 189.4 11.1 271 11-313 97-373 (419)
4 PLN00113 leucine-rich repeat r 99.9 8.8E-25 1.9E-29 226.5 18.4 378 63-466 85-462 (968)
5 PLN00113 leucine-rich repeat r 99.9 1E-24 2.2E-29 226.1 16.1 382 63-468 156-583 (968)
6 KOG4194 Membrane glycoprotein 99.9 1.1E-23 2.4E-28 187.6 3.4 349 96-467 75-427 (873)
7 KOG4194 Membrane glycoprotein 99.9 6.8E-24 1.5E-28 188.9 -1.6 363 72-463 79-446 (873)
8 cd00116 LRR_RI Leucine-rich re 99.8 3.1E-17 6.7E-22 148.7 23.1 284 155-467 3-318 (319)
9 KOG0444 Cytoskeletal regulator 99.8 1.6E-20 3.4E-25 169.4 -4.4 372 70-472 6-378 (1255)
10 cd00116 LRR_RI Leucine-rich re 99.8 2.4E-16 5.2E-21 142.9 21.9 283 129-440 2-317 (319)
11 KOG2120 SCF ubiquitin ligase, 99.7 4.3E-18 9.4E-23 139.8 7.4 234 229-468 139-375 (419)
12 PLN03210 Resistant to P. syrin 99.7 1.3E-17 2.7E-22 173.5 12.1 269 175-470 633-907 (1153)
13 PLN03210 Resistant to P. syrin 99.7 3.6E-17 7.9E-22 170.2 12.9 371 65-471 552-945 (1153)
14 KOG0444 Cytoskeletal regulator 99.6 1.8E-18 3.9E-23 156.2 -6.6 346 98-470 6-353 (1255)
15 KOG1947 Leucine rich repeat pr 99.6 1.4E-15 3.1E-20 146.4 11.9 273 10-285 43-328 (482)
16 KOG1947 Leucine rich repeat pr 99.6 1.1E-14 2.4E-19 140.2 10.3 235 225-471 187-442 (482)
17 KOG1909 Ran GTPase-activating 99.5 4.9E-13 1.1E-17 113.0 13.4 201 251-456 91-325 (382)
18 KOG0618 Serine/threonine phosp 99.4 3.3E-14 7.2E-19 134.6 1.1 128 330-468 361-488 (1081)
19 KOG1909 Ran GTPase-activating 99.4 5E-12 1.1E-16 107.0 12.3 193 272-468 86-310 (382)
20 KOG0472 Leucine-rich repeat pr 99.4 1.5E-14 3.3E-19 124.1 -3.3 105 200-314 204-308 (565)
21 KOG3207 Beta-tubulin folding c 99.3 9.1E-13 2E-17 114.6 3.0 212 224-440 119-336 (505)
22 KOG3207 Beta-tubulin folding c 99.3 7.3E-13 1.6E-17 115.2 1.2 216 198-420 117-340 (505)
23 KOG0618 Serine/threonine phosp 99.2 2.8E-13 6E-18 128.5 -3.8 357 70-465 44-439 (1081)
24 KOG4237 Extracellular matrix p 99.0 1.2E-11 2.6E-16 106.4 -2.7 88 350-441 270-357 (498)
25 PF12937 F-box-like: F-box-lik 99.0 1.5E-10 3.3E-15 70.5 2.6 38 12-51 1-38 (47)
26 KOG4237 Extracellular matrix p 99.0 3.3E-11 7.2E-16 103.7 -0.6 275 177-467 68-357 (498)
27 KOG0472 Leucine-rich repeat pr 99.0 1.3E-11 2.9E-16 106.4 -3.8 278 171-468 247-540 (565)
28 PRK15387 E3 ubiquitin-protein 99.0 8.6E-10 1.9E-14 107.7 6.9 265 125-451 201-465 (788)
29 PRK15387 E3 ubiquitin-protein 99.0 4.3E-10 9.4E-15 109.7 4.1 256 150-467 201-456 (788)
30 KOG3665 ZYG-1-like serine/thre 98.9 7E-09 1.5E-13 100.9 9.9 158 252-414 122-283 (699)
31 KOG3665 ZYG-1-like serine/thre 98.9 6.4E-09 1.4E-13 101.2 8.5 156 304-466 123-285 (699)
32 KOG2982 Uncharacterized conser 98.9 4.5E-09 9.7E-14 87.5 6.2 108 153-262 48-156 (418)
33 KOG2982 Uncharacterized conser 98.8 5.6E-09 1.2E-13 86.9 5.3 91 245-337 64-155 (418)
34 COG5238 RNA1 Ran GTPase-activa 98.8 1.3E-07 2.8E-12 78.0 12.7 42 276-317 90-134 (388)
35 PF00646 F-box: F-box domain; 98.6 1.5E-08 3.2E-13 62.2 2.2 39 11-51 2-40 (48)
36 PF14580 LRR_9: Leucine-rich r 98.6 2.3E-08 5.1E-13 79.4 3.7 105 353-464 41-148 (175)
37 COG5238 RNA1 Ran GTPase-activa 98.6 8.8E-07 1.9E-11 73.2 11.5 194 246-445 87-317 (388)
38 PRK15370 E3 ubiquitin-protein 98.6 1.6E-07 3.5E-12 92.5 8.4 255 150-451 178-435 (754)
39 PF14580 LRR_9: Leucine-rich r 98.6 1.8E-08 3.9E-13 80.1 0.9 107 353-468 18-125 (175)
40 KOG4658 Apoptotic ATPase [Sign 98.5 2.5E-08 5.3E-13 99.8 1.5 132 175-312 544-677 (889)
41 smart00256 FBOX A Receptor for 98.5 2E-07 4.3E-12 55.1 3.4 35 15-51 1-35 (41)
42 KOG1259 Nischarin, modulator o 98.4 1.4E-07 3.1E-12 78.9 3.5 126 329-467 285-410 (490)
43 PRK15370 E3 ubiquitin-protein 98.4 1.4E-06 3.1E-11 86.0 8.6 254 125-424 178-433 (754)
44 KOG4658 Apoptotic ATPase [Sign 98.3 5.3E-07 1.1E-11 90.5 4.2 34 11-46 404-439 (889)
45 PF13855 LRR_8: Leucine rich r 98.3 2.3E-07 4.9E-12 60.3 0.4 60 406-467 1-60 (61)
46 KOG3864 Uncharacterized conser 98.2 1.5E-06 3.2E-11 68.7 4.1 83 330-415 103-185 (221)
47 KOG3864 Uncharacterized conser 98.2 1.5E-06 3.2E-11 68.7 4.0 104 304-409 102-207 (221)
48 KOG0617 Ras suppressor protein 98.2 1.3E-08 2.9E-13 77.6 -7.5 155 277-444 32-186 (264)
49 PF13855 LRR_8: Leucine rich r 98.1 1.2E-06 2.5E-11 56.9 0.8 59 380-440 1-59 (61)
50 KOG1259 Nischarin, modulator o 98.1 1.5E-06 3.2E-11 73.0 1.4 101 328-440 307-409 (490)
51 KOG0617 Ras suppressor protein 98.0 6.9E-08 1.5E-12 73.8 -7.5 32 203-235 34-65 (264)
52 KOG1859 Leucine-rich repeat pr 97.9 4.9E-06 1.1E-10 78.4 2.0 107 350-467 183-290 (1096)
53 KOG1859 Leucine-rich repeat pr 97.8 2.2E-06 4.8E-11 80.7 -1.7 211 194-441 76-290 (1096)
54 PF12799 LRR_4: Leucine Rich r 97.5 0.00014 3E-09 43.0 3.8 38 406-445 1-38 (44)
55 PLN03150 hypothetical protein; 97.5 0.00022 4.8E-09 70.2 6.3 108 356-468 420-527 (623)
56 COG4886 Leucine-rich repeat (L 97.2 0.00046 9.9E-09 64.6 4.5 130 298-440 158-287 (394)
57 KOG2123 Uncharacterized conser 97.1 0.00016 3.4E-09 60.5 0.8 111 327-450 18-134 (388)
58 PLN03150 hypothetical protein; 97.1 0.0011 2.4E-08 65.4 6.6 106 305-416 420-525 (623)
59 COG4886 Leucine-rich repeat (L 97.1 0.00063 1.4E-08 63.7 4.6 173 278-468 116-289 (394)
60 KOG4308 LRR-containing protein 97.1 0.00021 4.5E-09 67.2 1.1 111 327-440 203-328 (478)
61 smart00367 LRR_CC Leucine-rich 96.9 0.0012 2.7E-08 33.8 2.9 24 429-452 1-24 (26)
62 KOG2739 Leucine-rich acidic nu 96.9 0.00017 3.7E-09 59.8 -0.6 63 175-237 64-127 (260)
63 PF12799 LRR_4: Leucine Rich r 96.9 0.00099 2.2E-08 39.4 2.7 35 430-467 1-35 (44)
64 KOG2123 Uncharacterized conser 96.8 0.00025 5.4E-09 59.3 -0.3 101 354-462 19-123 (388)
65 smart00367 LRR_CC Leucine-rich 96.8 0.002 4.3E-08 33.0 2.9 24 379-402 1-24 (26)
66 KOG2739 Leucine-rich acidic nu 96.7 0.00041 8.9E-09 57.7 0.1 112 352-468 41-155 (260)
67 KOG4308 LRR-containing protein 96.6 0.00072 1.6E-08 63.6 1.3 208 254-466 89-328 (478)
68 KOG1644 U2-associated snRNP A' 96.6 0.00074 1.6E-08 53.8 1.0 36 200-235 62-97 (233)
69 PRK15386 type III secretion pr 96.6 0.0052 1.1E-07 55.9 6.2 11 381-391 157-167 (426)
70 PLN03215 ascorbic acid mannose 96.4 0.0026 5.6E-08 57.0 3.4 40 10-50 2-41 (373)
71 KOG4579 Leucine-rich repeat (L 96.4 0.0015 3.3E-08 48.6 1.4 107 354-466 27-133 (177)
72 PRK15386 type III secretion pr 96.4 0.0079 1.7E-07 54.8 6.1 139 274-440 48-187 (426)
73 KOG4579 Leucine-rich repeat (L 96.4 0.0018 4E-08 48.2 1.7 125 329-460 28-152 (177)
74 KOG1644 U2-associated snRNP A' 96.3 0.003 6.4E-08 50.5 2.6 105 354-465 42-149 (233)
75 KOG2997 F-box protein FBX9 [Ge 96.1 0.0036 7.7E-08 53.4 2.2 42 8-50 103-148 (366)
76 PF13516 LRR_6: Leucine Rich r 96.0 0.0035 7.6E-08 31.4 1.1 20 406-425 2-21 (24)
77 KOG0281 Beta-TrCP (transducin 95.3 0.013 2.9E-07 50.5 2.5 40 9-50 72-115 (499)
78 PF13516 LRR_6: Leucine Rich r 95.2 0.024 5.1E-07 28.3 2.4 23 429-452 1-23 (24)
79 KOG0531 Protein phosphatase 1, 94.2 0.0066 1.4E-07 57.1 -2.1 55 175-235 117-171 (414)
80 KOG0531 Protein phosphatase 1, 93.8 0.029 6.2E-07 52.8 1.5 106 326-444 93-199 (414)
81 PF13013 F-box-like_2: F-box-l 92.9 0.15 3.3E-06 36.9 3.6 30 11-42 21-50 (109)
82 smart00368 LRR_RI Leucine rich 92.4 0.11 2.5E-06 27.0 1.9 22 406-427 2-23 (28)
83 smart00368 LRR_RI Leucine rich 91.8 0.24 5.2E-06 25.8 2.6 25 430-455 2-26 (28)
84 KOG0532 Leucine-rich repeat (L 91.6 0.0083 1.8E-07 55.9 -5.0 32 408-440 213-244 (722)
85 KOG3763 mRNA export factor TAP 90.8 0.51 1.1E-05 44.4 5.4 39 352-390 216-254 (585)
86 PF13504 LRR_7: Leucine rich r 90.1 0.23 4.9E-06 22.3 1.4 10 408-417 3-12 (17)
87 KOG0532 Leucine-rich repeat (L 89.8 0.011 2.4E-07 55.1 -5.9 87 378-472 164-250 (722)
88 PF00560 LRR_1: Leucine Rich R 87.9 0.31 6.7E-06 23.6 1.1 13 407-419 1-13 (22)
89 KOG0274 Cdc4 and related F-box 87.2 0.24 5.2E-06 47.8 0.8 44 6-51 102-145 (537)
90 PF13306 LRR_5: Leucine rich r 85.3 0.072 1.6E-06 40.6 -3.2 11 123-133 10-20 (129)
91 KOG3763 mRNA export factor TAP 85.1 1.4 3.1E-05 41.6 4.5 41 95-135 214-254 (585)
92 PF09372 PRANC: PRANC domain; 83.1 1.1 2.3E-05 32.1 2.4 27 9-37 69-95 (97)
93 KOG3926 F-box proteins [Amino 79.8 3.5 7.7E-05 34.9 4.5 41 8-49 198-238 (332)
94 smart00369 LRR_TYP Leucine-ric 77.2 1.9 4.2E-05 21.7 1.6 16 406-421 2-17 (26)
95 smart00370 LRR Leucine-rich re 77.2 1.9 4.2E-05 21.7 1.6 16 406-421 2-17 (26)
96 PF13306 LRR_5: Leucine rich r 76.5 0.95 2.1E-05 34.3 0.4 105 350-465 8-112 (129)
97 PF07723 LRR_2: Leucine Rich R 65.5 4.8 0.0001 20.4 1.4 8 330-337 2-9 (26)
98 smart00365 LRR_SD22 Leucine-ri 59.7 7.4 0.00016 19.8 1.4 12 407-418 3-14 (26)
99 KOG2502 Tub family proteins [G 51.4 14 0.00029 33.0 2.6 41 10-51 43-90 (355)
100 KOG3735 Tropomodulin and leiom 49.9 47 0.001 29.7 5.5 87 352-439 196-292 (353)
101 smart00364 LRR_BAC Leucine-ric 41.0 16 0.00034 18.6 0.9 13 407-419 3-15 (26)
102 KOG4242 Predicted myosin-I-bin 36.0 78 0.0017 30.0 5.0 74 379-454 412-491 (553)
103 KOG3735 Tropomodulin and leiom 31.1 1.2E+02 0.0026 27.3 5.1 30 241-270 187-216 (353)
104 PF03382 DUF285: Mycoplasma pr 26.3 51 0.0011 24.6 2.0 10 404-414 59-68 (120)
105 KOG1665 AFH1-interacting prote 25.3 84 0.0018 26.2 3.0 9 328-336 171-179 (302)
No 1
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=252.48 Aligned_cols=382 Identities=23% Similarity=0.400 Sum_probs=261.7
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccchhhHHHHhccCCCccEEecCCCC-CCChhhHH
Q 012001 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCP-RANDDALS 90 (473)
Q Consensus 12 ~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~-~~~~~~~~ 90 (473)
--.||+|++..||+ ++. .+.+++++++|+.|+-.+... .+.++.++.... .+....+.
T Consensus 72 ~~~LPpEl~lkvFS-~LD-tksl~r~a~~c~~~n~~AlD~-------------------~~~q~idL~t~~rDv~g~VV~ 130 (483)
T KOG4341|consen 72 SRSLPPELLLKVFS-MLD-TKSLCRAAQCCTMWNKLALDG-------------------SCWQHIDLFTFQRDVDGGVVE 130 (483)
T ss_pred cccCCHHHHHHHHH-HHh-HHHHHHHHHHHHHhhhhhhcc-------------------ccceeeehhcchhcCCCccee
Confidence 34699999999999 995 999999999999999765432 122333433221 11222333
Q ss_pred hhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHH
Q 012001 91 IVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIG 169 (473)
Q Consensus 91 ~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~ 169 (473)
.+ .......|+.|.+.+++......+..+...||++++|.+.+|..+++.....+++ |++|++|++..|..+++..++
T Consensus 131 ~~-~~Rcgg~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk 209 (483)
T KOG4341|consen 131 NM-ISRCGGFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK 209 (483)
T ss_pred hH-hhhhccccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH
Confidence 33 3455567778888777777777777777777777777777777777666555553 666777777766666666666
Q ss_pred HHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHh
Q 012001 170 RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEY 249 (473)
Q Consensus 170 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~ 249 (473)
.+.+.|++|+++++++|+.+.+.++..+.+++. .++.+...||.......+.....
T Consensus 210 ~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~------------------------~l~~~~~kGC~e~~le~l~~~~~ 265 (483)
T KOG4341|consen 210 YLAEGCRKLKYLNLSWCPQISGNGVQALQRGCK------------------------ELEKLSLKGCLELELEALLKAAA 265 (483)
T ss_pred HHHHhhhhHHHhhhccCchhhcCcchHHhccch------------------------hhhhhhhcccccccHHHHHHHhc
Confidence 666666666666666666555555554444444 34444445566666666666665
Q ss_pred cCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCC
Q 012001 250 SCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (473)
Q Consensus 250 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (473)
.++-+..+++..|..+++.++..+..++..|+.|..+++.. +++..+..++..+++
T Consensus 266 ~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~------------------------~~d~~l~aLg~~~~~ 321 (483)
T KOG4341|consen 266 YCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD------------------------ITDEVLWALGQHCHN 321 (483)
T ss_pred cChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC------------------------CchHHHHHHhcCCCc
Confidence 56667777777776677766666666666666666655533 344555566666777
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh---cCc
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQ 406 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~ 406 (473)
|+.|.++.|..+++.++..+-.+++.|+.+++..|..+++..+..++.+|+.|+.+.+++|..++++++..+.. .+.
T Consensus 322 L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~ 401 (483)
T KOG4341|consen 322 LQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLE 401 (483)
T ss_pred eEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcccccc
Confidence 77777777777777777777777777777777777767776677777777888888888777777777766643 455
Q ss_pred cCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 407 YLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 407 ~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|+.+.+.++ .+++..+..+..|++|+.+++.+|..++..++..+..++|++++...
T Consensus 402 ~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a~ 459 (483)
T KOG4341|consen 402 GLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHAY 459 (483)
T ss_pred ccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHHHhhCccceehhh
Confidence 6777788876 67777777777888888888888888888888888888888776543
No 2
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.95 E-value=1.1e-28 Score=210.49 Aligned_cols=298 Identities=26% Similarity=0.445 Sum_probs=232.1
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
.|++|.+.++..+.+..+..+...||++++|.+.+|..+++.....+.+.|++|+ +
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~------------------------~ 194 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLR------------------------H 194 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhh------------------------h
Confidence 4555555555555555555555555555555555555555555555555555444 4
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh-CCCCCCeeE
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH-NFPMLQSIK 309 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~ 309 (473)
+.+..|..+++..+..++.+|++|+++++++|+.+...++..+.+++..++.+...+|.....+...... .++-+..++
T Consensus 195 l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~ln 274 (483)
T KOG4341|consen 195 LNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLN 274 (483)
T ss_pred hhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccc
Confidence 4455566667777777777777777777777777777777777777777777766677655544443333 445566666
Q ss_pred ecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012001 310 FEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (473)
Q Consensus 310 l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (473)
+..|. +++..+..+...+..|+.|..++|..+++..+..+.+++++|+.+.+..|..+++..+..+..+++.|+.+++.
T Consensus 275 l~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e 354 (483)
T KOG4341|consen 275 LQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLE 354 (483)
T ss_pred hhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhccc
Confidence 66664 78888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhc----CCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISR----CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|..+++..+..+..+|+.|+.+.++.| .++|.++..+.. ...|+.+.+++|+.+++..+..+. .|++|+.+++
T Consensus 355 ~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~-~c~~Leri~l 433 (483)
T KOG4341|consen 355 ECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLS-ICRNLERIEL 433 (483)
T ss_pred ccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHh-hCcccceeee
Confidence 9999999989999999999999999998 899998777763 578999999999888887776666 8999999999
Q ss_pred CCCCCcccCC
Q 012001 464 YRFVTFHLSA 473 (473)
Q Consensus 464 ~~c~~l~~~~ 473 (473)
.+|.+++++|
T Consensus 434 ~~~q~vtk~~ 443 (483)
T KOG4341|consen 434 IDCQDVTKEA 443 (483)
T ss_pred echhhhhhhh
Confidence 9999998765
No 3
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.2e-26 Score=189.43 Aligned_cols=271 Identities=23% Similarity=0.342 Sum_probs=167.7
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh--hhccc----ccchhhHHHHhccCCCccEEecCCCCCC
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH--RKILK----PLCAETLSRTSARYPFITQLDLSLCPRA 84 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~--~~~~~----~~~~~~l~~~~~~~~~l~~L~l~~~~~~ 84 (473)
.|++|||||+..||+ .|+ .+++.+++.|||||+++.... |.... .++++.+.++.++- +..+.+.... .
T Consensus 97 ~~~slpDEill~IFs-~L~-kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rg--V~v~Rlar~~-~ 171 (419)
T KOG2120|consen 97 SWDSLPDEILLGIFS-CLC-KKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRG--VIVFRLARSF-M 171 (419)
T ss_pred CcccCCHHHHHHHHH-hcc-HHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCC--eEEEEcchhh-h
Confidence 489999999999999 999 999999999999999986543 22211 12233444444332 2223322211 1
Q ss_pred ChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccC
Q 012001 85 NDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLIT 164 (473)
Q Consensus 85 ~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 164 (473)
.+..+... ....-..|++++++.. .++...+..+..+|.+|+.|.+.|. .++|.....+++..+|+.|++++|.+++
T Consensus 172 ~~prlae~-~~~frsRlq~lDLS~s-~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN~~L~~lnlsm~sG~t 248 (419)
T KOG2120|consen 172 DQPRLAEH-FSPFRSRLQHLDLSNS-VITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKNSNLVRLNLSMCSGFT 248 (419)
T ss_pred cCchhhhh-hhhhhhhhHHhhcchh-heeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhccccceeeccccccccc
Confidence 12212222 2344456888888764 3677777777778888888888877 5777666777777888888888877777
Q ss_pred HHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHH
Q 012001 165 DLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGL 244 (473)
Q Consensus 165 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~ 244 (473)
..++.-+..+|..|..|++++|...++..-..+..-.++|+.|+++++. .++....+
T Consensus 249 ~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~r-----------------------rnl~~sh~ 305 (419)
T KOG2120|consen 249 ENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYR-----------------------RNLQKSHL 305 (419)
T ss_pred hhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhH-----------------------hhhhhhHH
Confidence 7777777777777777777776554444222222222444444444431 12333345
Q ss_pred HHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCC
Q 012001 245 ASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC 313 (473)
Q Consensus 245 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~ 313 (473)
..+.+.||+|.+|+++++..+++ +....+.+++.|++|.++.|..+.....-.+...|.|.+|++.||
T Consensus 306 ~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 306 STLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred HHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 55666677777777777766665 333444556777777777776555544444445555555555543
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.93 E-value=8.8e-25 Score=226.54 Aligned_cols=378 Identities=17% Similarity=0.134 Sum_probs=202.1
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
++..+..+++|+.|+++++.. .......+ ...+.+|++|+++++....... ...+++|++|+++++. +....
T Consensus 85 ~~~~~~~l~~L~~L~Ls~n~~-~~~ip~~~--~~~l~~L~~L~Ls~n~l~~~~p----~~~l~~L~~L~Ls~n~-~~~~~ 156 (968)
T PLN00113 85 ISSAIFRLPYIQTINLSNNQL-SGPIPDDI--FTTSSSLRYLNLSNNNFTGSIP----RGSIPNLETLDLSNNM-LSGEI 156 (968)
T ss_pred CChHHhCCCCCCEEECCCCcc-CCcCChHH--hccCCCCCEEECcCCccccccC----ccccCCCCEEECcCCc-ccccC
Confidence 344566777888888876532 11111111 2345777788777654211111 0246777777777763 33333
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (473)
...+..+++|++|+++++.... .....+. .+++|++|+++++......+ .....+++|+.|++++|.+.+.....+
T Consensus 157 p~~~~~l~~L~~L~L~~n~l~~-~~p~~~~-~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~L~~n~l~~~~p~~l 232 (968)
T PLN00113 157 PNDIGSFSSLKVLDLGGNVLVG-KIPNSLT-NLTSLEFLTLASNQLVGQIP--RELGQMKSLKWIYLGYNNLSGEIPYEI 232 (968)
T ss_pred ChHHhcCCCCCEEECccCcccc-cCChhhh-hCcCCCeeeccCCCCcCcCC--hHHcCcCCccEEECcCCccCCcCChhH
Confidence 3556777888888887764221 1112222 27778888877764322111 122366777777777777766666667
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCC
Q 012001 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNF 302 (473)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 302 (473)
.++++|++|++++|. +.......+.. +++|+.|+++++..... +...+..+++|++|+++++. +....+..+.++
T Consensus 233 ~~l~~L~~L~L~~n~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~l~~l~~L~~L~Ls~n~-l~~~~p~~~~~l 307 (968)
T PLN00113 233 GGLTSLNHLDLVYNN-LTGPIPSSLGN-LKNLQYLFLYQNKLSGP--IPPSIFSLQKLISLDLSDNS-LSGEIPELVIQL 307 (968)
T ss_pred hcCCCCCEEECcCce-eccccChhHhC-CCCCCEEECcCCeeecc--CchhHhhccCcCEEECcCCe-eccCCChhHcCC
Confidence 777777777777743 33222333444 67777777776653221 12223456777777777663 334455566677
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++|+.|++.+|.+....+..+. .+++|+.|++.+| .+... ++..+..+++|+.|+++++. ++...... ...+++|
T Consensus 308 ~~L~~L~l~~n~~~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~p~~l~~~~~L~~L~Ls~n~-l~~~~p~~-~~~~~~L 382 (968)
T PLN00113 308 QNLEILHLFSNNFTGKIPVALT-SLPRLQVLQLWSN-KFSGE-IPKNLGKHNNLTVLDLSTNN-LTGEIPEG-LCSSGNL 382 (968)
T ss_pred CCCcEEECCCCccCCcCChhHh-cCCCCCEEECcCC-CCcCc-CChHHhCCCCCcEEECCCCe-eEeeCChh-HhCcCCC
Confidence 7777777777766655544444 5677777777764 33221 33344556677777776654 22111111 1234555
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeee
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELD 462 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~ 462 (473)
+.|+++++. +.......+. .+++|+.|++++|.++...+..+..+++|+.|++++| .++.. ++.....+++|+.|+
T Consensus 383 ~~L~l~~n~-l~~~~p~~~~-~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L~ 458 (968)
T PLN00113 383 FKLILFSNS-LEGEIPKSLG-ACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN-NLQGR-INSRKWDMPSLQMLS 458 (968)
T ss_pred CEEECcCCE-ecccCCHHHh-CCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC-cccCc-cChhhccCCCCcEEE
Confidence 555555533 2222112222 4555555555555555444444445555555555555 44321 112222444555555
Q ss_pred cCCC
Q 012001 463 LYRF 466 (473)
Q Consensus 463 l~~c 466 (473)
+++|
T Consensus 459 L~~n 462 (968)
T PLN00113 459 LARN 462 (968)
T ss_pred CcCc
Confidence 5444
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.92 E-value=1e-24 Score=226.10 Aligned_cols=382 Identities=17% Similarity=0.122 Sum_probs=178.9
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
++..+..+++|+.|+++++.... .... ....+++|++|+++++.. .......+ ..+++|+.|+++++. +....
T Consensus 156 ~p~~~~~l~~L~~L~L~~n~l~~-~~p~---~~~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~-l~~~~ 228 (968)
T PLN00113 156 IPNDIGSFSSLKVLDLGGNVLVG-KIPN---SLTNLTSLEFLTLASNQL-VGQIPREL-GQMKSLKWIYLGYNN-LSGEI 228 (968)
T ss_pred CChHHhcCCCCCEEECccCcccc-cCCh---hhhhCcCCCeeeccCCCC-cCcCChHH-cCcCCccEEECcCCc-cCCcC
Confidence 45566778888888888764211 1111 123456777777766542 21111222 256667777766653 33222
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV 222 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l 222 (473)
...+.++++|++|++.++.. .......+ ..+++|+.|++.++......+ .....+++|+.|++++|.+.......+
T Consensus 229 p~~l~~l~~L~~L~L~~n~l-~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p--~~l~~l~~L~~L~Ls~n~l~~~~p~~~ 304 (968)
T PLN00113 229 PYEIGGLTSLNHLDLVYNNL-TGPIPSSL-GNLKNLQYLFLYQNKLSGPIP--PSIFSLQKLISLDLSDNSLSGEIPELV 304 (968)
T ss_pred ChhHhcCCCCCEEECcCcee-ccccChhH-hCCCCCCEEECcCCeeeccCc--hhHhhccCcCEEECcCCeeccCCChhH
Confidence 34556666666666666532 11111112 225566666665543211111 111244555555555555444444444
Q ss_pred ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccc-------------
Q 012001 223 VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF------------- 289 (473)
Q Consensus 223 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~------------- 289 (473)
.++++|+.|++.++. +.......+.. +++|+.|+++++..... +...+..+++|+.|+++++.
T Consensus 305 ~~l~~L~~L~l~~n~-~~~~~~~~~~~-l~~L~~L~L~~n~l~~~--~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~ 380 (968)
T PLN00113 305 IQLQNLEILHLFSNN-FTGKIPVALTS-LPRLQVLQLWSNKFSGE--IPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSG 380 (968)
T ss_pred cCCCCCcEEECCCCc-cCCcCChhHhc-CCCCCEEECcCCCCcCc--CChHHhCCCCCcEEECCCCeeEeeCChhHhCcC
Confidence 445555555555432 22111222222 44555555544432111 11112233344444443331
Q ss_pred ----------cCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC-----
Q 012001 290 ----------WVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK----- 354 (473)
Q Consensus 290 ----------~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~----- 354 (473)
.+....+..+..+++|+.|++.+|.+....+..+. .+++|+.|+++++ .++.. +...+..++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L~~L 457 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFT-KLPLVYFLDISNN-NLQGR-INSRKWDMPSLQML 457 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHh-cCCCCCEEECcCC-cccCc-cChhhccCCCCcEE
Confidence 11122333344455555555555544433333332 3444444444442 22211 111112233
Q ss_pred ------------------CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 355 ------------------ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 355 ------------------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
+|+.|++++|. ++.... .....+++|+.|++++|. +.......+. .+++|+.|++++|
T Consensus 458 ~L~~n~~~~~~p~~~~~~~L~~L~ls~n~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~p~~~~-~l~~L~~L~Ls~N 533 (968)
T PLN00113 458 SLARNKFFGGLPDSFGSKRLENLDLSRNQ-FSGAVP-RKLGSLSELMQLKLSENK-LSGEIPDELS-SCKKLVSLDLSHN 533 (968)
T ss_pred ECcCceeeeecCcccccccceEEECcCCc-cCCccC-hhhhhhhccCEEECcCCc-ceeeCChHHc-CccCCCEEECCCC
Confidence 44444444443 221111 112345666666666643 3222222222 5677777777777
Q ss_pred ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
.++...+..+..+++|+.|++++| +++. .++.....+++|+++++++|+-
T Consensus 534 ~l~~~~p~~~~~l~~L~~L~Ls~N-~l~~-~~p~~l~~l~~L~~l~ls~N~l 583 (968)
T PLN00113 534 QLSGQIPASFSEMPVLSQLDLSQN-QLSG-EIPKNLGNVESLVQVNISHNHL 583 (968)
T ss_pred cccccCChhHhCcccCCEEECCCC-cccc-cCChhHhcCcccCEEeccCCcc
Confidence 777666666667777777777777 5553 2344444677777777777763
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.88 E-value=1.1e-23 Score=187.57 Aligned_cols=349 Identities=19% Similarity=0.167 Sum_probs=176.9
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHHHHHhc
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAAC 174 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~ 174 (473)
...+..+.|+++++. +....+..+. .+|+|+++++..+ .++.++ .++. ..+|+.|+|..+. ++...-+.+..
T Consensus 75 ~lp~~t~~LdlsnNk-l~~id~~~f~-nl~nLq~v~l~~N-~Lt~IP--~f~~~sghl~~L~L~~N~-I~sv~se~L~~- 147 (873)
T KOG4194|consen 75 FLPSQTQTLDLSNNK-LSHIDFEFFY-NLPNLQEVNLNKN-ELTRIP--RFGHESGHLEKLDLRHNL-ISSVTSEELSA- 147 (873)
T ss_pred cCccceeeeeccccc-cccCcHHHHh-cCCcceeeeeccc-hhhhcc--cccccccceeEEeeeccc-cccccHHHHHh-
Confidence 344556677777654 3333333333 6777777777766 344432 2332 4457777777653 33332233322
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.|.|++|+++.+ .+.......+. .-+++++|++++|.+++-....+..+.+|-.|.++. +.++..+...+.+ +|+|
T Consensus 148 l~alrslDLSrN-~is~i~~~sfp-~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsr-NrittLp~r~Fk~-L~~L 223 (873)
T KOG4194|consen 148 LPALRSLDLSRN-LISEIPKPSFP-AKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSR-NRITTLPQRSFKR-LPKL 223 (873)
T ss_pred Hhhhhhhhhhhc-hhhcccCCCCC-CCCCceEEeeccccccccccccccccchheeeeccc-CcccccCHHHhhh-cchh
Confidence 667777777664 23332222111 235677777777777766666677777777777776 4555555544544 7777
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
+.|++..+..-...+ ..+.++++|+.|.+..+. +..---..+..+.++++|++..|.+..-.-..+. .+..|+.|+
T Consensus 224 ~~LdLnrN~irive~--ltFqgL~Sl~nlklqrN~-I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lf-gLt~L~~L~ 299 (873)
T KOG4194|consen 224 ESLDLNRNRIRIVEG--LTFQGLPSLQNLKLQRND-ISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLF-GLTSLEQLD 299 (873)
T ss_pred hhhhccccceeeehh--hhhcCchhhhhhhhhhcC-cccccCcceeeecccceeecccchhhhhhccccc-ccchhhhhc
Confidence 777776554211111 124556677777665442 2211123344556666666666654433322232 455666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
++. +.+..... ..+..+++|+.|+++++. ++...-..+ ..+..|+.|.++. +.++...-..+. .+.+|++|++.
T Consensus 300 lS~-NaI~rih~-d~WsftqkL~~LdLs~N~-i~~l~~~sf-~~L~~Le~LnLs~-Nsi~~l~e~af~-~lssL~~LdLr 373 (873)
T KOG4194|consen 300 LSY-NAIQRIHI-DSWSFTQKLKELDLSSNR-ITRLDEGSF-RVLSQLEELNLSH-NSIDHLAEGAFV-GLSSLHKLDLR 373 (873)
T ss_pred cch-hhhheeec-chhhhcccceeEeccccc-cccCChhHH-HHHHHhhhhcccc-cchHHHHhhHHH-HhhhhhhhcCc
Confidence 655 33322111 112345666666666543 333322222 1245555555555 223322211222 45556666665
Q ss_pred ccccCh---hhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 415 ENEVND---EGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 415 ~~~~~~---~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|.++- ++...+..+++|+.|.+.+| ++....-.++. ++++|++|++.+++
T Consensus 374 ~N~ls~~IEDaa~~f~gl~~LrkL~l~gN-qlk~I~krAfs-gl~~LE~LdL~~Na 427 (873)
T KOG4194|consen 374 SNELSWCIEDAAVAFNGLPSLRKLRLTGN-QLKSIPKRAFS-GLEALEHLDLGDNA 427 (873)
T ss_pred CCeEEEEEecchhhhccchhhhheeecCc-eeeecchhhhc-cCcccceecCCCCc
Confidence 553321 12223334556666666666 55543333333 55666666655554
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=6.8e-24 Score=188.93 Aligned_cols=363 Identities=21% Similarity=0.219 Sum_probs=228.7
Q ss_pred CccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCC
Q 012001 72 FITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKN 151 (473)
Q Consensus 72 ~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 151 (473)
..+.|++++.. +.+..+..+ ...++|+.+++.++. -..++.+.....+|+.|+|.++ .+.......++.++.
T Consensus 79 ~t~~LdlsnNk-l~~id~~~f---~nl~nLq~v~l~~N~---Lt~IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~l~a 150 (873)
T KOG4194|consen 79 QTQTLDLSNNK-LSHIDFEFF---YNLPNLQEVNLNKNE---LTRIPRFGHESGHLEKLDLRHN-LISSVTSEELSALPA 150 (873)
T ss_pred ceeeeeccccc-cccCcHHHH---hcCCcceeeeeccch---hhhcccccccccceeEEeeecc-ccccccHHHHHhHhh
Confidence 35677877653 344344333 667888888887653 2334555545667888888877 466655577777888
Q ss_pred CCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCee
Q 012001 152 LERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDL 231 (473)
Q Consensus 152 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 231 (473)
|++|+|+.+. +.......+.. -.++++|++.++ .+++.....+. .+.+|..|.++.|+++.-....+.++++|+.|
T Consensus 151 lrslDLSrN~-is~i~~~sfp~-~~ni~~L~La~N-~It~l~~~~F~-~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~L 226 (873)
T KOG4194|consen 151 LRSLDLSRNL-ISEIPKPSFPA-KVNIKKLNLASN-RITTLETGHFD-SLNSLLTLKLSRNRITTLPQRSFKRLPKLESL 226 (873)
T ss_pred hhhhhhhhch-hhcccCCCCCC-CCCceEEeeccc-ccccccccccc-ccchheeeecccCcccccCHHHhhhcchhhhh
Confidence 8888888753 44333333222 467888888875 45555544443 45688888888888876666667778888888
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEecCCCCc--cchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 232 VLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
++.. +.+.......+.. +++|+.|.+..+.. +++.. +-.+.++++|++..+ .+...-..++.++..|+.|+
T Consensus 227 dLnr-N~irive~ltFqg-L~Sl~nlklqrN~I~kL~DG~----Fy~l~kme~l~L~~N-~l~~vn~g~lfgLt~L~~L~ 299 (873)
T KOG4194|consen 227 DLNR-NRIRIVEGLTFQG-LPSLQNLKLQRNDISKLDDGA----FYGLEKMEHLNLETN-RLQAVNEGWLFGLTSLEQLD 299 (873)
T ss_pred hccc-cceeeehhhhhcC-chhhhhhhhhhcCcccccCcc----eeeecccceeecccc-hhhhhhcccccccchhhhhc
Confidence 8876 4454443333443 77788887776542 22222 344677888888765 23333345566778888888
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
++.|.+.......+. .+++|+.|+++. +.++... +..+..+..|+.|.++.+. ++...-.++ ..+.+|++|+++.
T Consensus 300 lS~NaI~rih~d~Ws-ftqkL~~LdLs~-N~i~~l~-~~sf~~L~~Le~LnLs~Ns-i~~l~e~af-~~lssL~~LdLr~ 374 (873)
T KOG4194|consen 300 LSYNAIQRIHIDSWS-FTQKLKELDLSS-NRITRLD-EGSFRVLSQLEELNLSHNS-IDHLAEGAF-VGLSSLHKLDLRS 374 (873)
T ss_pred cchhhhheeecchhh-hcccceeEeccc-cccccCC-hhHHHHHHHhhhhcccccc-hHHHHhhHH-HHhhhhhhhcCcC
Confidence 888877666555555 678888888877 4444321 2224455678888887764 443322222 3467888888876
Q ss_pred CCCCCH---HHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 390 CKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 390 ~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
+. ++. ++...+. +++.|+.|++.+|++....-.++..+++|++|++.+| .+......+|. .+ .|++|.+
T Consensus 375 N~-ls~~IEDaa~~f~-gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~N-aiaSIq~nAFe-~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 375 NE-LSWCIEDAAVAFN-GLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDN-AIASIQPNAFE-PM-ELKELVM 446 (873)
T ss_pred Ce-EEEEEecchhhhc-cchhhhheeecCceeeecchhhhccCcccceecCCCC-cceeecccccc-cc-hhhhhhh
Confidence 32 321 2223333 6888888888888887777777778888888888888 66554444444 33 5555543
No 8
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.79 E-value=3.1e-17 Score=148.71 Aligned_cols=284 Identities=19% Similarity=0.179 Sum_probs=162.4
Q ss_pred EecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHH---HHHHhhCCCCcEEeeccccCCC--CcccccccCcccC
Q 012001 155 LWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQEIRTLDLSYLPITE--KCLPPVVKLQYLE 229 (473)
Q Consensus 155 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~L~ 229 (473)
|+|.++ .+.......+...+++|+.|++.++. +++.+. .......+.+++++++++.+.. ..+.
T Consensus 3 l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~--------- 71 (319)
T cd00116 3 LSLKGE-LLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQ--------- 71 (319)
T ss_pred cccccC-cccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHH---------
Confidence 444432 23333334444446667777777753 433332 2233345566677666654431 1100
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCch---hHHHhhhCC-C
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSA---DLSKCLHNF-P 303 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~-~ 303 (473)
.....+.. +++|+.|+++++.... ...+..+... ++|++|+++++..... .+...+..+ +
T Consensus 72 ------------~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~ 137 (319)
T cd00116 72 ------------SLLQGLTK-GCGLQELDLSDNALGPDGCGVLESLLRS-SSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137 (319)
T ss_pred ------------HHHHHHHh-cCceeEEEccCCCCChhHHHHHHHHhcc-CcccEEEeeCCccchHHHHHHHHHHHhCCC
Confidence 01112222 4566666665554321 1122222222 4466666665532211 122334455 7
Q ss_pred CCCeeEecCCcCChhHHHHHH---hhCCCCCeEecCCCCCCChHHHHHHH---HhCCCCcEEecCCCCCCCHHHHHHH--
Q 012001 304 MLQSIKFEDCPVARSGIKAIG---NWHGSLKELSLSKCSGVTDEELSFVV---QSHKELRKLDITCCRKITYASINSI-- 375 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~-- 375 (473)
+|+.|++++|.++......+. ..+++|++|++++| .+++.++..+. ..+++|++|++++|. +++.....+
T Consensus 138 ~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~ 215 (319)
T cd00116 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAE 215 (319)
T ss_pred CceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHH
Confidence 778888888877754433332 24567888888874 56655544433 344588888888775 655544333
Q ss_pred -HhcCCCCCEEEccCCCCCCHHHHHHHHhcC----ccCCeeeecccccChhhhhhh----hcCCCCCeeecCCCCCcchH
Q 012001 376 -TKTCTSLTSLRMECCKLVSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSI----SRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 376 -~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l----~~~~~L~~L~l~~~~~l~~~ 446 (473)
...+++|+.|++++|. +++.++..+...+ +.|++|++++|.+++.+...+ ..+++|+.+++++| .+++.
T Consensus 216 ~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N-~l~~~ 293 (319)
T cd00116 216 TLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGN-KFGEE 293 (319)
T ss_pred HhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCC-CCcHH
Confidence 3457788888888864 6776666665443 689999999888886655443 34678999999998 88877
Q ss_pred HHHHHHh---cC-ccCCeeecCCCC
Q 012001 447 GLKHVGS---TC-SMLKELDLYRFV 467 (473)
Q Consensus 447 ~~~~~~~---~~-~~L~~L~l~~c~ 467 (473)
+...+.+ .. +.|++++|.+.+
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 294 GAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHHHHHHhhcCCchhhcccCCCC
Confidence 6554443 33 588888887764
No 9
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.76 E-value=1.6e-20 Score=169.35 Aligned_cols=372 Identities=18% Similarity=0.181 Sum_probs=246.4
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.|.++-+++++...-.+.....+ ..+..++-|.+.... -..++.-...+.+|++|.+.++. +.... ..+..+
T Consensus 6 LpFVrGvDfsgNDFsg~~FP~~v---~qMt~~~WLkLnrt~---L~~vPeEL~~lqkLEHLs~~HN~-L~~vh-GELs~L 77 (1255)
T KOG0444|consen 6 LPFVRGVDFSGNDFSGDRFPHDV---EQMTQMTWLKLNRTK---LEQVPEELSRLQKLEHLSMAHNQ-LISVH-GELSDL 77 (1255)
T ss_pred cceeecccccCCcCCCCcCchhH---HHhhheeEEEechhh---hhhChHHHHHHhhhhhhhhhhhh-hHhhh-hhhccc
Confidence 45677777777643333333333 455777777775532 23333434478889999888773 43332 567778
Q ss_pred CCCCEEecccCcccCHHHHHH-HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc
Q 012001 150 KNLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (473)
|.|+.+.+..+. +...++.. +.. +..|+.|+++.+. +...+ .-.+..+++-.|++++|++....-+-+.++.-|
T Consensus 78 p~LRsv~~R~N~-LKnsGiP~diF~-l~dLt~lDLShNq-L~EvP--~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDL 152 (1255)
T KOG0444|consen 78 PRLRSVIVRDNN-LKNSGIPTDIFR-LKDLTILDLSHNQ-LREVP--TNLEYAKNSIVLNLSYNNIETIPNSLFINLTDL 152 (1255)
T ss_pred hhhHHHhhhccc-cccCCCCchhcc-cccceeeecchhh-hhhcc--hhhhhhcCcEEEEcccCccccCCchHHHhhHhH
Confidence 888888877643 33333322 222 7788888888753 32222 223356788899999988764444445577788
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCee
Q 012001 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSI 308 (473)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 308 (473)
-.|+++. +.+...+ ..+.. +..|++|.+++++. .-..+.. +..+.+|+.|++++.......++..+..+.+|+.+
T Consensus 153 LfLDLS~-NrLe~LP-PQ~RR-L~~LqtL~Ls~NPL-~hfQLrQ-LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dv 227 (1255)
T KOG0444|consen 153 LFLDLSN-NRLEMLP-PQIRR-LSMLQTLKLSNNPL-NHFQLRQ-LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDV 227 (1255)
T ss_pred hhhcccc-chhhhcC-HHHHH-HhhhhhhhcCCChh-hHHHHhc-CccchhhhhhhcccccchhhcCCCchhhhhhhhhc
Confidence 8888887 3343322 23444 77899999998773 2222222 22345667777777655555677778888999999
Q ss_pred EecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEcc
Q 012001 309 KFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRME 388 (473)
Q Consensus 309 ~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 388 (473)
+++.|++.. .+..+. .+++|+.|++++ +.++... .....-.+|++|+++.+. ++ .++...-.+++|++|.+.
T Consensus 228 DlS~N~Lp~-vPecly-~l~~LrrLNLS~-N~iteL~--~~~~~W~~lEtLNlSrNQ-Lt--~LP~avcKL~kL~kLy~n 299 (1255)
T KOG0444|consen 228 DLSENNLPI-VPECLY-KLRNLRRLNLSG-NKITELN--MTEGEWENLETLNLSRNQ-LT--VLPDAVCKLTKLTKLYAN 299 (1255)
T ss_pred cccccCCCc-chHHHh-hhhhhheeccCc-Cceeeee--ccHHHHhhhhhhccccch-hc--cchHHHhhhHHHHHHHhc
Confidence 999987642 333333 678999999998 6666422 222233588999998765 44 233333468899999887
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+ +.++-++++.-...+.+|+.++..+|.+.- .+..+++|++|+.|.++.|.-+| ++.-+.-++-|+.|++.++|+
T Consensus 300 ~-NkL~FeGiPSGIGKL~~Levf~aanN~LEl-VPEglcRC~kL~kL~L~~NrLiT---LPeaIHlL~~l~vLDlreNpn 374 (1255)
T KOG0444|consen 300 N-NKLTFEGIPSGIGKLIQLEVFHAANNKLEL-VPEGLCRCVKLQKLKLDHNRLIT---LPEAIHLLPDLKVLDLRENPN 374 (1255)
T ss_pred c-CcccccCCccchhhhhhhHHHHhhcccccc-CchhhhhhHHHHHhcccccceee---chhhhhhcCCcceeeccCCcC
Confidence 7 557777766555577889999998876643 34778899999999999995555 666666789999999999999
Q ss_pred cccC
Q 012001 469 FHLS 472 (473)
Q Consensus 469 l~~~ 472 (473)
+.+.
T Consensus 375 LVMP 378 (1255)
T KOG0444|consen 375 LVMP 378 (1255)
T ss_pred ccCC
Confidence 8754
No 10
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.75 E-value=2.4e-16 Score=142.90 Aligned_cols=283 Identities=22% Similarity=0.236 Sum_probs=166.6
Q ss_pred EEEcCCCCccc-HHHHHHHHcCCCCCEEecccCcccCHHHHHH---HHhcCCcCceeecccCCCCC-HHHH---HHHHhh
Q 012001 129 EIDLSNGTEMG-DAAAAAIAEAKNLERLWLARCKLITDLGIGR---IAACCRKLKLLCLKWCIRVT-DLGV---ELVALK 200 (473)
Q Consensus 129 ~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~-~~~~---~~~~~~ 200 (473)
.|+|..+ .+. ......+..+.+|++|++.++. +++.+... .....++++++++.++.... ...+ ......
T Consensus 2 ~l~L~~~-~l~~~~~~~~~~~l~~L~~l~l~~~~-l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~ 79 (319)
T cd00116 2 QLSLKGE-LLKTERATELLPKLLCLQVLRLEGNT-LGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK 79 (319)
T ss_pred ccccccC-cccccchHHHHHHHhhccEEeecCCC-CcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence 4556554 333 3333455667889999999975 55544333 34457789999998754321 2222 223335
Q ss_pred CCCCcEEeeccccCCCCcccccccC---cccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcC
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKL---QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGA 277 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~---~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 277 (473)
+++|+.|+++++.+.......+..+ ++|++|++++|. +.+.+...+.. .+..+
T Consensus 80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~-~~~~~~~~l~~-----------------------~l~~~ 135 (319)
T cd00116 80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNG-LGDRGLRLLAK-----------------------GLKDL 135 (319)
T ss_pred cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCc-cchHHHHHHHH-----------------------HHHhC
Confidence 6788888888876654333333222 235555555532 33222221111 11222
Q ss_pred -cccceeeccccccCc---hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHH---
Q 012001 278 -DYLQQLILAYSFWVS---ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELS--- 347 (473)
Q Consensus 278 -~~L~~L~l~~~~~~~---~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~--- 347 (473)
++|+.|+++++.... ..+...+..+++|+.|++.+|.+.+.....+.. ..++|++|++++| .+++.+..
T Consensus 136 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~ 214 (319)
T cd00116 136 PPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALA 214 (319)
T ss_pred CCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHH
Confidence 444555554443221 122334455667777777777777655554443 3357888888874 45544433
Q ss_pred HHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCCCHHHHHHH---HhcCccCCeeeecccccCh
Q 012001 348 FVVQSHKELRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAFVLI---GQQCQYLEELDITENEVND 420 (473)
Q Consensus 348 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~ 420 (473)
..+..+++|++|++++|. +++..+..++..+ +.|++|++++|. +++.+...+ ...+++|+.+++++|.+++
T Consensus 215 ~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~l~~n~-i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~ 292 (319)
T cd00116 215 ETLASLKSLEVLNLGDNN-LTDAGAAALASALLSPNISLLTLSLSCND-ITDDGAKDLAEVLAEKESLLELDLRGNKFGE 292 (319)
T ss_pred HHhcccCCCCEEecCCCc-CchHHHHHHHHHHhccCCCceEEEccCCC-CCcHHHHHHHHHHhcCCCccEEECCCCCCcH
Confidence 334456788888888875 7776666665543 788999998865 654444333 2355789999999999998
Q ss_pred hhhhhhh----cC-CCCCeeecCCC
Q 012001 421 EGLKSIS----RC-SKLSSLKLGIC 440 (473)
Q Consensus 421 ~~~~~l~----~~-~~L~~L~l~~~ 440 (473)
.+...++ .. +.|+++++.++
T Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~~~ 317 (319)
T cd00116 293 EGAQLLAESLLEPGNELESLWVKDD 317 (319)
T ss_pred HHHHHHHHHHhhcCCchhhcccCCC
Confidence 8766555 23 68888888876
No 11
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.74 E-value=4.3e-18 Score=139.79 Aligned_cols=234 Identities=21% Similarity=0.333 Sum_probs=174.6
Q ss_pred CeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHh-cCcccceeeccccccCchhHHHhhhCCCCCCe
Q 012001 229 EDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQS 307 (473)
Q Consensus 229 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~ 307 (473)
+.+++.+ ..+....+..+.. .....+.+.... ..+..+.+.+. .-..|++|+++....-...+...+..|.+|+.
T Consensus 139 ~~lDl~~-r~i~p~~l~~l~~--rgV~v~Rlar~~-~~~prlae~~~~frsRlq~lDLS~s~it~stl~~iLs~C~kLk~ 214 (419)
T KOG2120|consen 139 QTLDLTG-RNIHPDVLGRLLS--RGVIVFRLARSF-MDQPRLAEHFSPFRSRLQHLDLSNSVITVSTLHGILSQCSKLKN 214 (419)
T ss_pred eeeccCC-CccChhHHHHHHh--CCeEEEEcchhh-hcCchhhhhhhhhhhhhHHhhcchhheeHHHHHHHHHHHHhhhh
Confidence 3455555 4455555555553 445555554322 22222322222 23468888888775444566677888999999
Q ss_pred eEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEc
Q 012001 308 IKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRM 387 (473)
Q Consensus 308 L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 387 (473)
|.+.|..+.|.....++ .-.+|+.|+++.|++++..++..++.+|..|..|+++.|...++.-...+.+--++|+.|++
T Consensus 215 lSlEg~~LdD~I~~~iA-kN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNl 293 (419)
T KOG2120|consen 215 LSLEGLRLDDPIVNTIA-KNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNL 293 (419)
T ss_pred ccccccccCcHHHHHHh-ccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhh
Confidence 99999999998888888 55889999999999999999999999999999999999986666644444445689999999
Q ss_pred cCCCC-CCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 388 ECCKL-VSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 388 ~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
+||.. +.+..+..+...||+|.+||+++| .+++.....+.+++.|++|.++.|..+....+..+. ..|+|.+|++.|
T Consensus 294 sG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~-s~psl~yLdv~g 372 (419)
T KOG2120|consen 294 SGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLELN-SKPSLVYLDVFG 372 (419)
T ss_pred hhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeeeec-cCcceEEEEecc
Confidence 98754 355667778889999999999996 788877777888999999999999888776665555 789999999998
Q ss_pred CCC
Q 012001 466 FVT 468 (473)
Q Consensus 466 c~~ 468 (473)
|-.
T Consensus 373 ~vs 375 (419)
T KOG2120|consen 373 CVS 375 (419)
T ss_pred ccC
Confidence 854
No 12
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.73 E-value=1.3e-17 Score=173.55 Aligned_cols=269 Identities=19% Similarity=0.218 Sum_probs=149.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
+++|+.|+++++..+...+- ...+++|+.|++.+|......+..+.++++|+.|++++|..+...+.. + .+++|
T Consensus 633 l~~Lk~L~Ls~~~~l~~ip~---ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~-i--~l~sL 706 (1153)
T PLN03210 633 LTGLRNIDLRGSKNLKEIPD---LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG-I--NLKSL 706 (1153)
T ss_pred CCCCCEEECCCCCCcCcCCc---cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc-C--CCCCC
Confidence 55666666655433322221 124566666666665333334444555666666666665544432211 1 25566
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh------hHHHHHHhhCC
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR------SGIKAIGNWHG 328 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~------~~~~~l~~~~~ 328 (473)
+.|++++|..... +....++|+.|+++++. +. .++.. ..+++|+.|.+.++.... .........++
T Consensus 707 ~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~-~lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~l~~~~~~~~~ 778 (1153)
T PLN03210 707 YRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IE-EFPSN-LRLENLDELILCEMKSEKLWERVQPLTPLMTMLSP 778 (1153)
T ss_pred CEEeCCCCCCccc-----cccccCCcCeeecCCCc-cc-ccccc-ccccccccccccccchhhccccccccchhhhhccc
Confidence 6666666543221 11123456666665543 11 12211 134566666665432100 00001111346
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
+|+.|++++|..+.. ++..+..+++|+.|++++|..++... ... .+++|+.|++++|..+... ....++|
T Consensus 779 sL~~L~Ls~n~~l~~--lP~si~~L~~L~~L~Ls~C~~L~~LP--~~~-~L~sL~~L~Ls~c~~L~~~-----p~~~~nL 848 (1153)
T PLN03210 779 SLTRLFLSDIPSLVE--LPSSIQNLHKLEHLEIENCINLETLP--TGI-NLESLESLDLSGCSRLRTF-----PDISTNI 848 (1153)
T ss_pred cchheeCCCCCCccc--cChhhhCCCCCCEEECCCCCCcCeeC--CCC-CccccCEEECCCCCccccc-----ccccccc
Confidence 788888887654432 44456677888888888877665322 111 4678888888888765321 1123678
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
+.|++++|.++... ..+..+++|+.|++++|.+++. ++.....+++|+.+++++|.+++
T Consensus 849 ~~L~Ls~n~i~~iP-~si~~l~~L~~L~L~~C~~L~~--l~~~~~~L~~L~~L~l~~C~~L~ 907 (1153)
T PLN03210 849 SDLNLSRTGIEEVP-WWIEKFSNLSFLDMNGCNNLQR--VSLNISKLKHLETVDFSDCGALT 907 (1153)
T ss_pred CEeECCCCCCccCh-HHHhcCCCCCEEECCCCCCcCc--cCcccccccCCCeeecCCCcccc
Confidence 88888888776543 4566788888888888877774 33334467888888888888775
No 13
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.72 E-value=3.6e-17 Score=170.17 Aligned_cols=371 Identities=16% Similarity=0.174 Sum_probs=224.3
Q ss_pred HHhccCCCccEEecCCCCC--CCh---hhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCccc
Q 012001 65 RTSARYPFITQLDLSLCPR--AND---DALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMG 139 (473)
Q Consensus 65 ~~~~~~~~l~~L~l~~~~~--~~~---~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 139 (473)
..+..+++|+.|.+..... ... .....+ .....+|+.|.+.++.. ..++..+ ...+|++|++.++ .+.
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~--~~lp~~Lr~L~~~~~~l---~~lP~~f-~~~~L~~L~L~~s-~l~ 624 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGF--DYLPPKLRLLRWDKYPL---RCMPSNF-RPENLVKLQMQGS-KLE 624 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcch--hhcCcccEEEEecCCCC---CCCCCcC-CccCCcEEECcCc-ccc
Confidence 3466677788887754310 000 000111 12235688888766431 1122222 4678999999887 344
Q ss_pred HHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcc
Q 012001 140 DAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCL 219 (473)
Q Consensus 140 ~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 219 (473)
.. +..+..+++|+.|++.++..+...+ .+. .+++|+.|++.+|..+...+. ....+++|+.|++++|..-.. +
T Consensus 625 ~L-~~~~~~l~~Lk~L~Ls~~~~l~~ip--~ls-~l~~Le~L~L~~c~~L~~lp~--si~~L~~L~~L~L~~c~~L~~-L 697 (1153)
T PLN03210 625 KL-WDGVHSLTGLRNIDLRGSKNLKEIP--DLS-MATNLETLKLSDCSSLVELPS--SIQYLNKLEDLDMSRCENLEI-L 697 (1153)
T ss_pred cc-ccccccCCCCCEEECCCCCCcCcCC--ccc-cCCcccEEEecCCCCccccch--hhhccCCCCEEeCCCCCCcCc-c
Confidence 43 2445678999999998865444322 222 378999999998876654432 234788999999998733222 2
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccC------ch
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWV------SA 293 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~------~~ 293 (473)
+...++++|+.|++++|..+.. +....++|+.|++.++. +.. ++.. ..+++|++|.+.++... ..
T Consensus 698 p~~i~l~sL~~L~Lsgc~~L~~-----~p~~~~nL~~L~L~~n~-i~~--lP~~-~~l~~L~~L~l~~~~~~~l~~~~~~ 768 (1153)
T PLN03210 698 PTGINLKSLYRLNLSGCSRLKS-----FPDISTNISWLDLDETA-IEE--FPSN-LRLENLDELILCEMKSEKLWERVQP 768 (1153)
T ss_pred CCcCCCCCCCEEeCCCCCCccc-----cccccCCcCeeecCCCc-ccc--cccc-ccccccccccccccchhhccccccc
Confidence 2222688999999999865443 22225688899888765 221 1111 13577787777653210 00
Q ss_pred hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH
Q 012001 294 DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
..+.....+++|+.|++++|......+..+. .+++|+.|++.+|..+.. ++... .+++|++|++++|..+...
T Consensus 769 l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~-~L~~L~~L~Ls~C~~L~~--LP~~~-~L~sL~~L~Ls~c~~L~~~--- 841 (1153)
T PLN03210 769 LTPLMTMLSPSLTRLFLSDIPSLVELPSSIQ-NLHKLEHLEIENCINLET--LPTGI-NLESLESLDLSGCSRLRTF--- 841 (1153)
T ss_pred cchhhhhccccchheeCCCCCCccccChhhh-CCCCCCEEECCCCCCcCe--eCCCC-CccccCEEECCCCCccccc---
Confidence 0111122356899999998875555555555 788999999998876553 22222 4688999999988765432
Q ss_pred HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHH--
Q 012001 374 SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-- 450 (473)
Q Consensus 374 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-- 450 (473)
....++|+.|+++++ .++. ++.....+++|+.|++.+| .+... ...+..+++|+.+++++|..++...+..
T Consensus 842 --p~~~~nL~~L~Ls~n-~i~~--iP~si~~l~~L~~L~L~~C~~L~~l-~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~ 915 (1153)
T PLN03210 842 --PDISTNISDLNLSRT-GIEE--VPWWIEKFSNLSFLDMNGCNNLQRV-SLNISKLKHLETVDFSDCGALTEASWNGSP 915 (1153)
T ss_pred --cccccccCEeECCCC-CCcc--ChHHHhcCCCCCEEECCCCCCcCcc-CcccccccCCCeeecCCCcccccccCCCCc
Confidence 123468889998874 3542 2222337889999999886 55543 2345578888889999987776432211
Q ss_pred ---------HHhcCccCCeeecCCCCCccc
Q 012001 451 ---------VGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 451 ---------~~~~~~~L~~L~l~~c~~l~~ 471 (473)
....+|....+.+.+|.++..
T Consensus 916 ~~~~~~~~n~~~~~p~~~~l~f~nC~~L~~ 945 (1153)
T PLN03210 916 SEVAMATDNIHSKLPSTVCINFINCFNLDQ 945 (1153)
T ss_pred hhhhhhcccccccCCchhccccccccCCCc
Confidence 011344445567777777654
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.64 E-value=1.8e-18 Score=156.24 Aligned_cols=346 Identities=16% Similarity=0.151 Sum_probs=238.2
Q ss_pred CCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCc
Q 012001 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (473)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (473)
++-++-.+++++. ++...++.-...+..++-|.|... .+...+ ..++++.+|++|.+..+..++.. ..+. .+|.
T Consensus 6 LpFVrGvDfsgND-Fsg~~FP~~v~qMt~~~WLkLnrt-~L~~vP-eEL~~lqkLEHLs~~HN~L~~vh--GELs-~Lp~ 79 (1255)
T KOG0444|consen 6 LPFVRGVDFSGND-FSGDRFPHDVEQMTQMTWLKLNRT-KLEQVP-EELSRLQKLEHLSMAHNQLISVH--GELS-DLPR 79 (1255)
T ss_pred cceeecccccCCc-CCCCcCchhHHHhhheeEEEechh-hhhhCh-HHHHHHhhhhhhhhhhhhhHhhh--hhhc-cchh
Confidence 4556667777765 444445555558899999999876 455554 67899999999999886533221 2222 3889
Q ss_pred CceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEE
Q 012001 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (473)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (473)
|+.+.+..+. +...++..=+-.+..|+.|+++.|++. +.+..+...+++-.|++++ +++...+-..+.+ +.-|-.|
T Consensus 80 LRsv~~R~N~-LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfin-LtDLLfL 155 (1255)
T KOG0444|consen 80 LRSVIVRDNN-LKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSY-NNIETIPNSLFIN-LTDLLFL 155 (1255)
T ss_pred hHHHhhhccc-cccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEccc-CccccCCchHHHh-hHhHhhh
Confidence 9999888753 333333222237889999999999876 5777788888999999998 4555444333444 7778888
Q ss_pred ecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChh-HHHHHHhhCCCCCeEecC
Q 012001 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARS-GIKAIGNWHGSLKELSLS 336 (473)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~~L~~L~l~ 336 (473)
+++.+.. ..++.-...+..|++|.+++++.. ..-...+..+.+|+.|.+++..-+-. .+..+ ..+.||+.++++
T Consensus 156 DLS~NrL---e~LPPQ~RRL~~LqtL~Ls~NPL~-hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsl-d~l~NL~dvDlS 230 (1255)
T KOG0444|consen 156 DLSNNRL---EMLPPQIRRLSMLQTLKLSNNPLN-HFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSL-DDLHNLRDVDLS 230 (1255)
T ss_pred ccccchh---hhcCHHHHHHhhhhhhhcCCChhh-HHHHhcCccchhhhhhhcccccchhhcCCCch-hhhhhhhhcccc
Confidence 9987652 223334556788999999988532 22333444566777888887653322 22222 256789999998
Q ss_pred CCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
. ++++- ++..+-.+++|+.|+++++. ++.... -...+.+|++|+++.+. ++. ++.-...++.|+.|.+.+|
T Consensus 231 ~-N~Lp~--vPecly~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrNQ-Lt~--LP~avcKL~kL~kLy~n~N 301 (1255)
T KOG0444|consen 231 E-NNLPI--VPECLYKLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRNQ-LTV--LPDAVCKLTKLTKLYANNN 301 (1255)
T ss_pred c-cCCCc--chHHHhhhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccch-hcc--chHHHhhhHHHHHHHhccC
Confidence 7 55553 45556677999999999875 654332 22347899999999843 432 2222237789999999999
Q ss_pred ccChhhhh-hhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 417 EVNDEGLK-SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 417 ~~~~~~~~-~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
.++-+|+. .++++.+|+.+...+| ++. -++.-...|+.|+.|.+..+.-||
T Consensus 302 kL~FeGiPSGIGKL~~Levf~aanN-~LE--lVPEglcRC~kL~kL~L~~NrLiT 353 (1255)
T KOG0444|consen 302 KLTFEGIPSGIGKLIQLEVFHAANN-KLE--LVPEGLCRCVKLQKLKLDHNRLIT 353 (1255)
T ss_pred cccccCCccchhhhhhhHHHHhhcc-ccc--cCchhhhhhHHHHHhcccccceee
Confidence 88877644 4788999999999998 776 355556689999999999888776
No 15
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.63 E-value=1.4e-15 Score=146.40 Aligned_cols=273 Identities=28% Similarity=0.364 Sum_probs=125.3
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhccccc-----chhhHHHHhccCCCccEEecCCCCCC
Q 012001 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPL-----CAETLSRTSARYPFITQLDLSLCPRA 84 (473)
Q Consensus 10 ~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~-----~~~~l~~~~~~~~~l~~L~l~~~~~~ 84 (473)
......|++....++. ..+ ..+......+++.|..........+... ...........+...+.+........
T Consensus 43 ~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (482)
T KOG1947|consen 43 RFTLLLPDELLADLLL-KLV-VLDRESVSLVTRLWLTLLGSLRLRLKSLSVSSVDLDLLASLLVRFKSLTLLDLLSLSKV 120 (482)
T ss_pred eeeeccccchhhhccc-ccc-cccccccchhhhhhhhhhhhhhhhhhhcccCCcCHHHhhhhhhcchhhHHHHhccCccc
Confidence 3566777778777777 665 7777778888888887654432221111 11223333333333333333222211
Q ss_pred ChhhHHhh-hccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCccc-HH-HHHHHHcCCCCCEEecccCc
Q 012001 85 NDDALSIV-SSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMG-DA-AAAAIAEAKNLERLWLARCK 161 (473)
Q Consensus 85 ~~~~~~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~-~~-~~~~l~~~~~L~~L~l~~~~ 161 (473)
.......+ +........ .................+...+..++.+++..+.... .. .......++.|+.|.+.++.
T Consensus 121 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~l~l~~~~ 199 (482)
T KOG1947|consen 121 STLSLLSIFSLLVKLRNL-LLNLSLRSLLSGERLLELSRGLANLESLSLSCCGSLLLDKILLRLLSSCPLLKRLSLSGCS 199 (482)
T ss_pred cccchhhhhhhhhhcchh-hccccccccccccchHHHHHHHHHHheeeeecccccccHHHHHHHHhhCchhhHhhhcccc
Confidence 11111111 000111111 1111111111222222233234444444444332211 11 11222235666666666666
Q ss_pred ccCHHHHHHHHhcCCcCceeeccc-CCCCCHHH--HHHHHhhCCCCcEEeecccc-CCCCccccccc-CcccCeeeccCC
Q 012001 162 LITDLGIGRIAACCRKLKLLCLKW-CIRVTDLG--VELVALKCQEIRTLDLSYLP-ITEKCLPPVVK-LQYLEDLVLEGC 236 (473)
Q Consensus 162 ~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~--~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~-~~~L~~L~l~~~ 236 (473)
.+.+.++..+...++.|+.|++.+ +..+...+ ...+...|++|+.|++..+. +++..+..++. +++|+.|.+..|
T Consensus 200 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c 279 (482)
T KOG1947|consen 200 KITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNC 279 (482)
T ss_pred cCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCC
Confidence 666555555555566666666655 22222111 22234455556666665553 55555555443 555555555555
Q ss_pred CCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeec
Q 012001 237 HGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLIL 285 (473)
Q Consensus 237 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 285 (473)
..+++.++..+...++.|++|++++|..+++.++......+++++.|.+
T Consensus 280 ~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~ 328 (482)
T KOG1947|consen 280 SNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKL 328 (482)
T ss_pred CccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhh
Confidence 5455555555555555555555555555545444444444555544443
No 16
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=99.56 E-value=1.1e-14 Score=140.21 Aligned_cols=235 Identities=31% Similarity=0.481 Sum_probs=124.1
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCC-CccchH--HHHHHHhcCcccceeeccccccCchhHHHhhhC
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC-QNISHV--GLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~-~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (473)
++.|+.+.+.+|..+.+.....+...++.|+.|+++++ ...... ........+++|+.|+++++..+++.....+..
T Consensus 187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~ 266 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS 266 (482)
T ss_pred CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence 56666666666666666555555555667777776652 222211 122234445666666666655444444444443
Q ss_pred -CCCCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC---CCCCHHHHHHHH
Q 012001 302 -FPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC---RKITYASINSIT 376 (473)
Q Consensus 302 -~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~---~~~~~~~~~~~~ 376 (473)
|++|+.|.+.+|. +++.++..++..+++|++|++++|..+++.++......|++|+.|.+..+ ..+++..+....
T Consensus 267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~ 346 (482)
T KOG1947|consen 267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLL 346 (482)
T ss_pred hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhh
Confidence 5666666665555 56666666666666666666666666666666666555665555443322 223333222222
Q ss_pred ------------hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhh-cCCCCCeeecCCCCCc
Q 012001 377 ------------KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNI 443 (473)
Q Consensus 377 ------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l 443 (473)
.++++++.+.+.+|. ..+.+......+||+| + ..+.... .+..++.|.++.|..+
T Consensus 347 ~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l----------~-~~l~~~~~~~~~l~~L~l~~~~~~ 414 (482)
T KOG1947|consen 347 TLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNL----------T-ESLELRLCRSDSLRVLNLSDCRLV 414 (482)
T ss_pred ccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCccc----------c-hHHHHHhccCCccceEecccCccc
Confidence 223333333333322 2222222222222222 1 1111111 2223688888888777
Q ss_pred chHHHHHHHhcCccCCeeecCCCCCccc
Q 012001 444 TDEGLKHVGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 444 ~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 471 (473)
++..+......+.++..+++.+|+.++.
T Consensus 415 t~~~l~~~~~~~~~~~~l~~~~~~~~~~ 442 (482)
T KOG1947|consen 415 TDKGLRCLADSCSNLKDLDLSGCRVITL 442 (482)
T ss_pred cccchHHHhhhhhccccCCccCcccccc
Confidence 7777777665577888888888877764
No 17
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.50 E-value=4.9e-13 Score=113.03 Aligned_cols=201 Identities=21% Similarity=0.293 Sum_probs=142.6
Q ss_pred CCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCchhHHH-------------hhhCCCCCCeeEecCCcC
Q 012001 251 CKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSADLSK-------------CLHNFPMLQSIKFEDCPV 315 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------------~l~~~~~L~~L~l~~~~~ 315 (473)
+|+|+.++++++-.-. ..++..++.++.+|++|.+.+|. +....-. ....-++|+.+...+|.+
T Consensus 91 ~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~G-lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrl 169 (382)
T KOG1909|consen 91 CPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCG-LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRL 169 (382)
T ss_pred CCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCC-CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccc
Confidence 6788888888775322 23566677788888888888874 3332222 223457899999999987
Q ss_pred ChhHHHHH---HhhCCCCCeEecCCCCCCChHHH---HHHHHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEE
Q 012001 316 ARSGIKAI---GNWHGSLKELSLSKCSGVTDEEL---SFVVQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLR 386 (473)
Q Consensus 316 ~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~ 386 (473)
.+.+...+ .+..++|+.+.+.. +.+...++ ...+..||+|+.|++..+. ++..+-..++ ..++.|+.|+
T Consensus 170 en~ga~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~LakaL~s~~~L~El~ 247 (382)
T KOG1909|consen 170 ENGGATALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKALSSWPHLRELN 247 (382)
T ss_pred ccccHHHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHHhcccchheeec
Confidence 66554443 44678999999987 56655544 3345678999999998765 5555444443 3578899999
Q ss_pred ccCCCCCCHHHH----HHHHhcCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCc--chHHHHHHHhcCc
Q 012001 387 MECCKLVSWEAF----VLIGQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNI--TDEGLKHVGSTCS 456 (473)
Q Consensus 387 l~~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l--~~~~~~~~~~~~~ 456 (473)
+++|. +...|. ..+....|.|+.|.+.+|.++..+...+. ..|.|+.|++++| .+ .+.++..+...++
T Consensus 248 l~dcl-l~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN-~l~e~de~i~ei~~~~~ 325 (382)
T KOG1909|consen 248 LGDCL-LENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGN-RLGEKDEGIDEIASKFD 325 (382)
T ss_pred ccccc-cccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcc-cccccchhHHHHHHhcc
Confidence 99987 544443 34445678999999999998887766544 4689999999999 88 6777877776654
No 18
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.42 E-value=3.3e-14 Score=134.60 Aligned_cols=128 Identities=20% Similarity=0.243 Sum_probs=61.3
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
|+.|++.+ +.++|.-++ .+.++++|+.|+++++. ++..+...+ .+++.|+.|+++| +.++.-. ..++ .|+.|+
T Consensus 361 Lq~Lylan-N~Ltd~c~p-~l~~~~hLKVLhLsyNr-L~~fpas~~-~kle~LeeL~LSG-NkL~~Lp-~tva-~~~~L~ 433 (1081)
T KOG0618|consen 361 LQELYLAN-NHLTDSCFP-VLVNFKHLKVLHLSYNR-LNSFPASKL-RKLEELEELNLSG-NKLTTLP-DTVA-NLGRLH 433 (1081)
T ss_pred HHHHHHhc-Ccccccchh-hhccccceeeeeecccc-cccCCHHHH-hchHHhHHHhccc-chhhhhh-HHHH-hhhhhH
Confidence 33444444 344444332 23355666666666553 222222122 3456666666666 3233222 1112 455555
Q ss_pred eeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 410 ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+|...+|++.... .+++++.|+.++++.| +++...++.-. -.|+|++|+++|++.
T Consensus 434 tL~ahsN~l~~fP--e~~~l~qL~~lDlS~N-~L~~~~l~~~~-p~p~LkyLdlSGN~~ 488 (1081)
T KOG0618|consen 434 TLRAHSNQLLSFP--ELAQLPQLKVLDLSCN-NLSEVTLPEAL-PSPNLKYLDLSGNTR 488 (1081)
T ss_pred HHhhcCCceeech--hhhhcCcceEEecccc-hhhhhhhhhhC-CCcccceeeccCCcc
Confidence 5555555554432 4455566666666665 55554444333 235666666666553
No 19
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=99.39 E-value=5e-12 Score=107.02 Aligned_cols=193 Identities=18% Similarity=0.246 Sum_probs=140.5
Q ss_pred HHHhcCcccceeeccccccCch---hHHHhhhCCCCCCeeEecCCcCChhHHHHHHh------------hCCCCCeEecC
Q 012001 272 SLIKGADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGN------------WHGSLKELSLS 336 (473)
Q Consensus 272 ~~~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~------------~~~~L~~L~l~ 336 (473)
..+.++|+|++|+++++..-.. .+-..+.++..|++|.+.+|.++..+-..+++ .-+.|+.+..+
T Consensus 86 ~aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~ 165 (382)
T KOG1909|consen 86 KALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICG 165 (382)
T ss_pred HHHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEee
Confidence 3455688999999998753322 33455678899999999999888766555432 35688888887
Q ss_pred CCCCCChH---HHHHHHHhCCCCcEEecCCCCCCCHHHH---HHHHhcCCCCCEEEccCCCCCCHHHHHHHHh---cCcc
Q 012001 337 KCSGVTDE---ELSFVVQSHKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQ---QCQY 407 (473)
Q Consensus 337 ~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~ 407 (473)
. +.+.+. .+...++.+|.|+.+.++.+. +...+. ..-+.+||.|+.|++.. +.++..+-..++. .+++
T Consensus 166 r-Nrlen~ga~~~A~~~~~~~~leevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~ 242 (382)
T KOG1909|consen 166 R-NRLENGGATALAEAFQSHPTLEEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPH 242 (382)
T ss_pred c-cccccccHHHHHHHHHhccccceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccch
Confidence 7 444433 355567788999999998765 443333 23345799999999998 4466655555443 5678
Q ss_pred CCeeeecccccChhhhhhhh-----cCCCCCeeecCCCCCcchHHHHHHH---hcCccCCeeecCCCCC
Q 012001 408 LEELDITENEVNDEGLKSIS-----RCSKLSSLKLGICSNITDEGLKHVG---STCSMLKELDLYRFVT 468 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~-----~~~~L~~L~l~~~~~l~~~~~~~~~---~~~~~L~~L~l~~c~~ 468 (473)
|++|++++|.+.+.|..++. ..|+|+.|.+.+| .++..+...+. ...|.|..|++.+|.-
T Consensus 243 L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gN-eIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 243 LRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGN-EITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred heeecccccccccccHHHHHHHHhccCCCCceeccCcc-hhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 99999999999998877765 3789999999999 88876655433 2578999999999864
No 20
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.38 E-value=1.5e-14 Score=124.10 Aligned_cols=105 Identities=23% Similarity=0.192 Sum_probs=66.4
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+.+|+.|++..+++. .++.|..+..|++++++. +.+.... ....++++++..|++.++. +... +.-+..+.+
T Consensus 204 ~l~~L~~LyL~~Nki~--~lPef~gcs~L~Elh~g~-N~i~~lp-ae~~~~L~~l~vLDLRdNk-lke~--Pde~clLrs 276 (565)
T KOG0472|consen 204 GLESLELLYLRRNKIR--FLPEFPGCSLLKELHVGE-NQIEMLP-AEHLKHLNSLLVLDLRDNK-LKEV--PDEICLLRS 276 (565)
T ss_pred chhhhHHHHhhhcccc--cCCCCCccHHHHHHHhcc-cHHHhhH-HHHhcccccceeeeccccc-cccC--chHHHHhhh
Confidence 4556667777777663 455777777888888776 3444333 3344458889999998876 2221 122334677
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP 314 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 314 (473)
|++|+++++.. ...+..++++ .|+.|.+.|++
T Consensus 277 L~rLDlSNN~i--s~Lp~sLgnl-hL~~L~leGNP 308 (565)
T KOG0472|consen 277 LERLDLSNNDI--SSLPYSLGNL-HLKFLALEGNP 308 (565)
T ss_pred hhhhcccCCcc--ccCCcccccc-eeeehhhcCCc
Confidence 88888887632 2445556666 67777777765
No 21
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=9.1e-13 Score=114.64 Aligned_cols=212 Identities=18% Similarity=0.203 Sum_probs=139.4
Q ss_pred cCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCC
Q 012001 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (473)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (473)
++.+|+++.+.++. +...+.......|++++.|+++.+-...-..+..++..+|+|+.|+++.+.......-..-..++
T Consensus 119 n~kkL~~IsLdn~~-V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 119 NLKKLREISLDNYR-VEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred hHHhhhheeecCcc-ccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 57889999998853 44444334555699999999998776556678888889999999999876432211111112567
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
.|+.|.++.|.++...+..+...+|+|+.|++..+..+.-.... .+.+..|+.|+++++..++....... ..+|.|+
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~--~~i~~~L~~LdLs~N~li~~~~~~~~-~~l~~L~ 274 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATS--TKILQTLQELDLSNNNLIDFDQGYKV-GTLPGLN 274 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecch--hhhhhHHhhccccCCccccccccccc-ccccchh
Confidence 88888888888888777777778888888888874332211111 22345788888888775554433333 4688888
Q ss_pred EEEccCCCCCCHHH-----HHHHHhcCccCCeeeecccccChh-hhhhhhcCCCCCeeecCCC
Q 012001 384 SLRMECCKLVSWEA-----FVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 384 ~L~l~~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 440 (473)
.|+++.|. +++.. ........|+|+.|++..|++.+- .+..+..+++|+.|.+..+
T Consensus 275 ~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n 336 (505)
T KOG3207|consen 275 QLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLN 336 (505)
T ss_pred hhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhcccc
Confidence 88887754 33221 122233667888888888877553 2233445677777776666
No 22
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.28 E-value=7.3e-13 Score=115.24 Aligned_cols=216 Identities=20% Similarity=0.191 Sum_probs=144.4
Q ss_pred HhhCCCCcEEeeccccCCCCccc-ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhc
Q 012001 198 ALKCQEIRTLDLSYLPITEKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKG 276 (473)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 276 (473)
...+.+|+.+.+.++.+...... ....+++++.|+++.+-...-..+..++..+|+|+.|+++.+......+ ......
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~-s~~~~~ 195 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFIS-SNTTLL 195 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcc-ccchhh
Confidence 34667888889998877655443 3346999999999984333344556777779999999999775322111 111224
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCc-CChh-HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP-VARS-GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
+++|+.|.++.|.....++...+..+|+|+.|++.+|. +... .... .+..|++|+|++.+.++... ......+|
T Consensus 196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~-~~~~~~l~ 271 (505)
T KOG3207|consen 196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQ-GYKVGTLP 271 (505)
T ss_pred hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCccccccc-cccccccc
Confidence 78899999999976666777777889999999999984 2221 1122 34689999999865554332 23445678
Q ss_pred CCcEEecCCCCCCCHHHHHH-----HHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 355 ELRKLDITCCRKITYASINS-----ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~-----~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
.|+.|+++.+. +.+..... ....+|+|++|++..+.-.....+..+. .+++|+.|.+..|.++.
T Consensus 272 ~L~~Lnls~tg-i~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~-~l~nlk~l~~~~n~ln~ 340 (505)
T KOG3207|consen 272 GLNQLNLSSTG-IASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLR-TLENLKHLRITLNYLNK 340 (505)
T ss_pred chhhhhccccC-cchhcCCCccchhhhcccccceeeecccCccccccccchhh-ccchhhhhhcccccccc
Confidence 88888887664 44333222 2346899999999885533334455444 67888888887765554
No 23
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.24 E-value=2.8e-13 Score=128.50 Aligned_cols=357 Identities=20% Similarity=0.189 Sum_probs=179.2
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.-+|+.|++++... .+... ......+|+.|.++.+. ... .+.-...+.+|+.+.|.++ .+... ...+..+
T Consensus 44 ~v~L~~l~lsnn~~-~~fp~----~it~l~~L~~ln~s~n~--i~~-vp~s~~~~~~l~~lnL~~n-~l~~l-P~~~~~l 113 (1081)
T KOG0618|consen 44 RVKLKSLDLSNNQI-SSFPI----QITLLSHLRQLNLSRNY--IRS-VPSSCSNMRNLQYLNLKNN-RLQSL-PASISEL 113 (1081)
T ss_pred eeeeEEeecccccc-ccCCc----hhhhHHHHhhcccchhh--Hhh-Cchhhhhhhcchhheeccc-hhhcC-chhHHhh
Confidence 34488888876532 22111 22345677777776542 111 1222236788888888766 23332 2567777
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHH--------------HHHhhCCCCcE-EeeccccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVE--------------LVALKCQEIRT-LDLSYLPI 214 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--------------~~~~~~~~L~~-L~l~~~~~ 214 (473)
.+|+.|+++++.... .+. ....+..++.+..+++..+...+.. .+......++. |++.++.+
T Consensus 114 knl~~LdlS~N~f~~-~Pl--~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~ 190 (1081)
T KOG0618|consen 114 KNLQYLDLSFNHFGP-IPL--VIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEM 190 (1081)
T ss_pred hcccccccchhccCC-Cch--hHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchh
Confidence 888888888765322 111 1111333333333332111000000 00000112222 44444433
Q ss_pred CCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchh
Q 012001 215 TEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD 294 (473)
Q Consensus 215 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 294 (473)
. ...+..+++|+.+.... +.+. .+...-++|+.|+...+...+.. ....-.+|++++++.+. +. .
T Consensus 191 ~---~~dls~~~~l~~l~c~r-n~ls-----~l~~~g~~l~~L~a~~n~l~~~~----~~p~p~nl~~~dis~n~-l~-~ 255 (1081)
T KOG0618|consen 191 E---VLDLSNLANLEVLHCER-NQLS-----ELEISGPSLTALYADHNPLTTLD----VHPVPLNLQYLDISHNN-LS-N 255 (1081)
T ss_pred h---hhhhhhccchhhhhhhh-cccc-----eEEecCcchheeeeccCcceeec----cccccccceeeecchhh-hh-c
Confidence 2 12222233333333222 1111 11111355556655555432110 01112467777777652 22 3
Q ss_pred HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHH--
Q 012001 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI-- 372 (473)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-- 372 (473)
++.++..+.+|+.+....|.+.. .+..+. ...+|+.|.+..| .+. .++......+.|++|++..+. +.....
T Consensus 256 lp~wi~~~~nle~l~~n~N~l~~-lp~ri~-~~~~L~~l~~~~n-el~--yip~~le~~~sL~tLdL~~N~-L~~lp~~~ 329 (1081)
T KOG0618|consen 256 LPEWIGACANLEALNANHNRLVA-LPLRIS-RITSLVSLSAAYN-ELE--YIPPFLEGLKSLRTLDLQSNN-LPSLPDNF 329 (1081)
T ss_pred chHHHHhcccceEecccchhHHh-hHHHHh-hhhhHHHHHhhhh-hhh--hCCCcccccceeeeeeehhcc-ccccchHH
Confidence 44777778888888887777632 222222 3445555555442 221 122223334556666655432 211100
Q ss_pred --------HHHH--------------hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 373 --------NSIT--------------KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 373 --------~~~~--------------~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
..+- ...+.|+.|.+.+ +.+++..++.+. +.++||.|++++|.++.-.-..+.+++
T Consensus 330 l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~~kle 407 (1081)
T KOG0618|consen 330 LAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKLRKLE 407 (1081)
T ss_pred HhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHHhchH
Confidence 0000 1134566666766 457777777776 888999999999988776666777888
Q ss_pred CCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.|++|+++|| +++. ++.-+..|+.|++|..-+
T Consensus 408 ~LeeL~LSGN-kL~~--Lp~tva~~~~L~tL~ahs 439 (1081)
T KOG0618|consen 408 ELEELNLSGN-KLTT--LPDTVANLGRLHTLRAHS 439 (1081)
T ss_pred HhHHHhcccc-hhhh--hhHHHHhhhhhHHHhhcC
Confidence 9999999999 8884 455555788888875543
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.04 E-value=1.2e-11 Score=106.38 Aligned_cols=88 Identities=18% Similarity=0.187 Sum_probs=52.6
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
++.+|+|+.|+++++. ++...-.++ .....+++|.+.. +.+.... ..+.+++..|+.|++++|+|+...+.++...
T Consensus 270 f~~L~~L~~lnlsnN~-i~~i~~~aF-e~~a~l~eL~L~~-N~l~~v~-~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 270 FKKLPNLRKLNLSNNK-ITRIEDGAF-EGAAELQELYLTR-NKLEFVS-SGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred HhhcccceEeccCCCc-cchhhhhhh-cchhhhhhhhcCc-chHHHHH-HHhhhccccceeeeecCCeeEEEeccccccc
Confidence 5566667777776654 444333333 2345666666655 2232211 1233367778888888888887777777777
Q ss_pred CCCCeeecCCCC
Q 012001 430 SKLSSLKLGICS 441 (473)
Q Consensus 430 ~~L~~L~l~~~~ 441 (473)
..|.+|.+-.|+
T Consensus 346 ~~l~~l~l~~Np 357 (498)
T KOG4237|consen 346 FSLSTLNLLSNP 357 (498)
T ss_pred ceeeeeehccCc
Confidence 777777776653
No 25
>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B.
Probab=99.03 E-value=1.5e-10 Score=70.49 Aligned_cols=38 Identities=26% Similarity=0.496 Sum_probs=33.1
Q ss_pred cccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 12 FDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 12 ~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
|..||+||+.+||+ |++ .+|+.++++|||+|++++...
T Consensus 1 i~~LP~Eil~~If~-~L~-~~dl~~~~~vcr~w~~~~~~~ 38 (47)
T PF12937_consen 1 ISSLPDEILLEIFS-YLD-PRDLLRLSLVCRRWRRIANDN 38 (47)
T ss_dssp CCCS-HHHHHHHHT-TS--HHHHHHHTTSSHHHHHHHTCC
T ss_pred ChHhHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHCCh
Confidence 57899999999999 996 999999999999999998543
No 26
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.02 E-value=3.3e-11 Score=103.73 Aligned_cols=275 Identities=17% Similarity=0.090 Sum_probs=151.0
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
.-..+.+..+ .++..+-..+ +.+++|+.|+++.|.++.....++..+++|..|.+.+.+.+++..-..+.. +..|+.
T Consensus 68 ~tveirLdqN-~I~~iP~~aF-~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~g-L~slqr 144 (498)
T KOG4237|consen 68 ETVEIRLDQN-QISSIPPGAF-KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGG-LSSLQR 144 (498)
T ss_pred cceEEEeccC-CcccCChhhc-cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhh-HHHHHH
Confidence 4455666553 3444443333 367888888888888877777778788888888877767777766555555 666666
Q ss_pred EecCCCCccchHHHHHHHhcCcccceeeccccccCchhHH-HhhhCCCCCCeeEecCCcC-ChhHHHHHHh---------
Q 012001 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCPV-ARSGIKAIGN--------- 325 (473)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~-~~~~~~~l~~--------- 325 (473)
|.+.-+. +.. .....+..+++|..|.+.++.. ..+. ..+..+..++.+.+..+++ .+-.++.+..
T Consensus 145 LllNan~-i~C-ir~~al~dL~~l~lLslyDn~~--q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iet 220 (498)
T KOG4237|consen 145 LLLNANH-INC-IRQDALRDLPSLSLLSLYDNKI--QSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIET 220 (498)
T ss_pred HhcChhh-hcc-hhHHHHHHhhhcchhcccchhh--hhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhc
Confidence 6655433 111 1233455567777777665421 1122 2445556666666665542 1111111110
Q ss_pred -hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE--ec-CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHH
Q 012001 326 -WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL--DI-TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLI 401 (473)
Q Consensus 326 -~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L--~l-~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~ 401 (473)
.+....-..+.. ..+....-..+. -.++.+ .+ +.|. ........-.+.+|+|++|++++ +.++...-.++
T Consensus 221 sgarc~~p~rl~~-~Ri~q~~a~kf~---c~~esl~s~~~~~d~-~d~~cP~~cf~~L~~L~~lnlsn-N~i~~i~~~aF 294 (498)
T KOG4237|consen 221 SGARCVSPYRLYY-KRINQEDARKFL---CSLESLPSRLSSEDF-PDSICPAKCFKKLPNLRKLNLSN-NKITRIEDGAF 294 (498)
T ss_pred ccceecchHHHHH-HHhcccchhhhh---hhHHhHHHhhccccC-cCCcChHHHHhhcccceEeccCC-Cccchhhhhhh
Confidence 000011111110 000000000000 012222 11 1221 22222233346789999999988 55665444444
Q ss_pred HhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. ....+++|.+..|.+....-..+..+..|+.|++++| +++-..... .+...+|.+|.+-.+|
T Consensus 295 e-~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N-~it~~~~~a-F~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 295 E-GAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDN-QITTVAPGA-FQTLFSLSTLNLLSNP 357 (498)
T ss_pred c-chhhhhhhhcCcchHHHHHHHhhhccccceeeeecCC-eeEEEeccc-ccccceeeeeehccCc
Confidence 4 6778899999888877666566677888999999999 887543333 3367788888876654
No 27
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.00 E-value=1.3e-11 Score=106.37 Aligned_cols=278 Identities=16% Similarity=0.126 Sum_probs=147.2
Q ss_pred HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhc
Q 012001 171 IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYS 250 (473)
Q Consensus 171 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 250 (473)
..+.++++..|+++++ .+...+.+.. .+++|++|+++++.++ .....++++ +|+.|.+.|+. +....-+-+..+
T Consensus 247 ~~~~L~~l~vLDLRdN-klke~Pde~c--lLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNP-lrTiRr~ii~~g 320 (565)
T KOG0472|consen 247 HLKHLNSLLVLDLRDN-KLKEVPDEIC--LLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNP-LRTIRREIISKG 320 (565)
T ss_pred Hhcccccceeeecccc-ccccCchHHH--HhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCc-hHHHHHHHHccc
Confidence 3345788888999885 4554444433 4578999999998776 355667777 88889888843 222111101000
Q ss_pred ----CCCCcE----EecCCCCccchH------HHHHHHhcCcccceeeccccc--cCchhHHHhhhCCCCCCeeEecCCc
Q 012001 251 ----CKSLKA----LNLSKCQNISHV------GLSSLIKGADYLQQLILAYSF--WVSADLSKCLHNFPMLQSIKFEDCP 314 (473)
Q Consensus 251 ----~~~L~~----L~l~~~~~~~~~------~~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~l~~~~~L~~L~l~~~~ 314 (473)
++.|+. =.++.....+.. ....-.....+.+.|+++.-. .+.++++++. .-.-...++++.+.
T Consensus 321 T~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~-~~~~Vt~VnfskNq 399 (565)
T KOG0472|consen 321 TQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAA-KSEIVTSVNFSKNQ 399 (565)
T ss_pred HHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHh-hhcceEEEecccch
Confidence 011111 011111100000 000001123445666655421 1222333221 22336677777776
Q ss_pred CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 012001 315 VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394 (473)
Q Consensus 315 ~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (473)
+.. .+..+...-.-++.+.++. +.++. .+..+..+++|..|+++++. +.+...+. ..+..|+.|+++... +.
T Consensus 400 L~e-lPk~L~~lkelvT~l~lsn-n~isf--v~~~l~~l~kLt~L~L~NN~-Ln~LP~e~--~~lv~Lq~LnlS~Nr-Fr 471 (565)
T KOG0472|consen 400 LCE-LPKRLVELKELVTDLVLSN-NKISF--VPLELSQLQKLTFLDLSNNL-LNDLPEEM--GSLVRLQTLNLSFNR-FR 471 (565)
T ss_pred Hhh-hhhhhHHHHHHHHHHHhhc-Ccccc--chHHHHhhhcceeeecccch-hhhcchhh--hhhhhhheecccccc-cc
Confidence 432 2222221111222334443 44443 45556677888888888764 44333322 245668888888742 21
Q ss_pred HHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
.++........++.+-.++|++.......+..+.+|..|++.+| .+. .++...++|.+|++|++.|+|-
T Consensus 472 --~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nN-dlq--~IPp~LgnmtnL~hLeL~gNpf 540 (565)
T KOG0472|consen 472 --MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNN-DLQ--QIPPILGNMTNLRHLELDGNPF 540 (565)
T ss_pred --cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCC-chh--hCChhhccccceeEEEecCCcc
Confidence 12222212334556666667777776666777888888888887 554 4667777888888888888763
No 28
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.97 E-value=8.6e-10 Score=107.67 Aligned_cols=265 Identities=17% Similarity=0.141 Sum_probs=134.4
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
.+-..|+++++ .++..+ ..+. ++|+.|.+.++. ++. +....++|++|+++++ .++..+. ..++|
T Consensus 201 ~~~~~LdLs~~-~LtsLP-~~l~--~~L~~L~L~~N~-Lt~-----LP~lp~~Lk~LdLs~N-~LtsLP~-----lp~sL 264 (788)
T PRK15387 201 NGNAVLNVGES-GLTTLP-DCLP--AHITTLVIPDNN-LTS-----LPALPPELRTLEVSGN-QLTSLPV-----LPPGL 264 (788)
T ss_pred CCCcEEEcCCC-CCCcCC-cchh--cCCCEEEccCCc-CCC-----CCCCCCCCcEEEecCC-ccCcccC-----ccccc
Confidence 34555666655 333322 1121 356666666542 222 1112456666666654 2332211 23466
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.|++.+|.+.. +.. ..++|+.|+++++ .+... ....++|+.|+++++... . +. ....+|+.|.
T Consensus 265 ~~L~Ls~N~L~~--Lp~--lp~~L~~L~Ls~N-~Lt~L-----P~~p~~L~~LdLS~N~L~-~--Lp---~lp~~L~~L~ 328 (788)
T PRK15387 265 LELSIFSNPLTH--LPA--LPSGLCKLWIFGN-QLTSL-----PVLPPGLQELSVSDNQLA-S--LP---ALPSELCKLW 328 (788)
T ss_pred ceeeccCCchhh--hhh--chhhcCEEECcCC-ccccc-----cccccccceeECCCCccc-c--CC---CCcccccccc
Confidence 666666654431 111 1245666666653 23321 112356677766665421 1 11 1123456666
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++. +. .++. -..+|+.|++++|.+..-. . ..++|+.|.+++ +.++. ++.. .++|+.|+++++
T Consensus 329 Ls~N~-L~-~LP~---lp~~Lq~LdLS~N~Ls~LP--~---lp~~L~~L~Ls~-N~L~~--LP~l---~~~L~~LdLs~N 392 (788)
T PRK15387 329 AYNNQ-LT-SLPT---LPSGLQELSVSDNQLASLP--T---LPSELYKLWAYN-NRLTS--LPAL---PSGLKELIVSGN 392 (788)
T ss_pred cccCc-cc-cccc---cccccceEecCCCccCCCC--C---CCcccceehhhc-ccccc--Cccc---ccccceEEecCC
Confidence 65542 11 1111 1136777777777665311 1 235677777766 34442 2221 246788888776
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ++. ++ ...++|+.|+++++. ++. ++. ...+|+.|++++|.++.. +..+.++++|+.|++++| .++
T Consensus 393 ~-Lt~--LP---~l~s~L~~LdLS~N~-Lss--IP~---l~~~L~~L~Ls~NqLt~L-P~sl~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 393 R-LTS--LP---VLPSELKELMVSGNR-LTS--LPM---LPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred c-ccC--CC---CcccCCCEEEccCCc-CCC--CCc---chhhhhhhhhccCccccc-ChHHhhccCCCeEECCCC-CCC
Confidence 4 442 11 123578888888754 432 221 124677888888877743 355667888888888888 777
Q ss_pred hHHHHHH
Q 012001 445 DEGLKHV 451 (473)
Q Consensus 445 ~~~~~~~ 451 (473)
...+..+
T Consensus 459 ~~~~~~L 465 (788)
T PRK15387 459 ERTLQAL 465 (788)
T ss_pred chHHHHH
Confidence 6544444
No 29
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=98.96 E-value=4.3e-10 Score=109.69 Aligned_cols=256 Identities=20% Similarity=0.078 Sum_probs=139.9
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
..-..|+++.+. ++..+. .+ .++|+.|.+.++. ++..+ ...++|++|++++|.++. ++. ..++|+
T Consensus 201 ~~~~~LdLs~~~-LtsLP~-~l---~~~L~~L~L~~N~-Lt~LP-----~lp~~Lk~LdLs~N~Lts--LP~--lp~sL~ 265 (788)
T PRK15387 201 NGNAVLNVGESG-LTTLPD-CL---PAHITTLVIPDNN-LTSLP-----ALPPELRTLEVSGNQLTS--LPV--LPPGLL 265 (788)
T ss_pred CCCcEEEcCCCC-CCcCCc-ch---hcCCCEEEccCCc-CCCCC-----CCCCCCcEEEecCCccCc--ccC--cccccc
Confidence 445567776652 332111 11 2467777777643 33322 134778888888776652 222 245777
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.|++.++ .+.. +....++|+.|+++++.. ... ....++|+.|+++++. +.. ++. -..+|+.|+
T Consensus 266 ~L~Ls~N-~L~~-----Lp~lp~~L~~L~Ls~N~L-t~L-----P~~p~~L~~LdLS~N~-L~~-Lp~---lp~~L~~L~ 328 (788)
T PRK15387 266 ELSIFSN-PLTH-----LPALPSGLCKLWIFGNQL-TSL-----PVLPPGLQELSVSDNQ-LAS-LPA---LPSELCKLW 328 (788)
T ss_pred eeeccCC-chhh-----hhhchhhcCEEECcCCcc-ccc-----cccccccceeECCCCc-ccc-CCC---Ccccccccc
Confidence 7777764 2322 222235677777777652 211 1124677888877763 221 111 123577777
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
+.+|.+..- .. ..++|+.|++++ +.++. ++. ..++|+.|+++++. ++. ++. ...+|+.|++++
T Consensus 329 Ls~N~L~~L--P~---lp~~Lq~LdLS~-N~Ls~--LP~---lp~~L~~L~Ls~N~-L~~--LP~---l~~~L~~LdLs~ 391 (788)
T PRK15387 329 AYNNQLTSL--PT---LPSGLQELSVSD-NQLAS--LPT---LPSELYKLWAYNNR-LTS--LPA---LPSGLKELIVSG 391 (788)
T ss_pred cccCccccc--cc---cccccceEecCC-CccCC--CCC---CCcccceehhhccc-ccc--Ccc---cccccceEEecC
Confidence 777766531 11 124677888877 45442 221 12467777776654 432 221 235677888877
Q ss_pred CCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+. ++. ++. ..++|+.|++++|.++... . ...+|+.|++++| +++. ++.-...+++|+.|++++|+
T Consensus 392 N~-Lt~--LP~---l~s~L~~LdLS~N~LssIP-~---l~~~L~~L~Ls~N-qLt~--LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 392 NR-LTS--LPV---LPSELKELMVSGNRLTSLP-M---LPSGLLSLSVYRN-QLTR--LPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred Cc-ccC--CCC---cccCCCEEEccCCcCCCCC-c---chhhhhhhhhccC-cccc--cChHHhhccCCCeEECCCCC
Confidence 43 432 111 2356778888887776432 1 1346777788777 6763 44444467788888887775
No 30
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.90 E-value=7e-09 Score=100.88 Aligned_cols=158 Identities=18% Similarity=0.153 Sum_probs=101.1
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (473)
.+|++|+++|...+.......+...+|+|++|.+.+.....+++.....++|+|..|+|++++++.- ..+. .+++|+
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS-~LknLq 198 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGIS-RLKNLQ 198 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHh-ccccHH
Confidence 5778888877666555555566666788888888776656666666667788888888888776653 3333 567777
Q ss_pred eEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH----HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCcc
Q 012001 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN----SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (473)
.|.+.+-.-.+...+..++ .+.+|+.|++|...+..+..+. .....+|+|+.|+.++ ..++...++.+...-|+
T Consensus 199 ~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSg-Tdi~~~~le~ll~sH~~ 276 (699)
T KOG3665|consen 199 VLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSG-TDINEEILEELLNSHPN 276 (699)
T ss_pred HHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCC-cchhHHHHHHHHHhCcc
Confidence 7777764333334555555 5778888888765544333111 1112367777777777 55666777766666666
Q ss_pred CCeeeec
Q 012001 408 LEELDIT 414 (473)
Q Consensus 408 L~~L~l~ 414 (473)
|+.+.+-
T Consensus 277 L~~i~~~ 283 (699)
T KOG3665|consen 277 LQQIAAL 283 (699)
T ss_pred Hhhhhhh
Confidence 6666544
No 31
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.87 E-value=6.4e-09 Score=101.18 Aligned_cols=156 Identities=22% Similarity=0.251 Sum_probs=85.1
Q ss_pred CCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 304 MLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 304 ~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+|++|+++|.. +....+..++..+|+|++|.+.+ ..+..+.+..++.++|+|..|+|+++. +++. ...+++++|
T Consensus 123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn-I~nl---~GIS~LknL 197 (699)
T KOG3665|consen 123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN-ISNL---SGISRLKNL 197 (699)
T ss_pred hhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC-ccCc---HHHhccccH
Confidence 44555554433 22334445555666666666666 344444466666666666666666643 4433 223456666
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh---hhhhhh---cCCCCCeeecCCCCCcchHHHHHHHhcCc
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE---GLKSIS---RCSKLSSLKLGICSNITDEGLKHVGSTCS 456 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~l~---~~~~L~~L~l~~~~~l~~~~~~~~~~~~~ 456 (473)
+.|.+.+-+.-+...+..+. ++++|+.||++.....+. ...++. .+|+|+.|+.++. .++...+..+...-|
T Consensus 198 q~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgT-di~~~~le~ll~sH~ 275 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGT-DINEEILEELLNSHP 275 (699)
T ss_pred HHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCc-chhHHHHHHHHHhCc
Confidence 66666554332334445555 667777777766321111 111222 2667777777776 666666666666666
Q ss_pred cCCeeecCCC
Q 012001 457 MLKELDLYRF 466 (473)
Q Consensus 457 ~L~~L~l~~c 466 (473)
+|+.+.+-+|
T Consensus 276 ~L~~i~~~~~ 285 (699)
T KOG3665|consen 276 NLQQIAALDC 285 (699)
T ss_pred cHhhhhhhhh
Confidence 6666554443
No 32
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=4.5e-09 Score=87.47 Aligned_cols=108 Identities=19% Similarity=0.147 Sum_probs=63.9
Q ss_pred CEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCccccc-ccCcccCee
Q 012001 153 ERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPV-VKLQYLEDL 231 (473)
Q Consensus 153 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L 231 (473)
+-|.+.++..-+...+..+...+..++.+++.++..-.-..+..+.+++|.|+.|+++.|.+. ..+..+ ....+|+.+
T Consensus 48 ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~-s~I~~lp~p~~nl~~l 126 (418)
T KOG2982|consen 48 ELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLS-SDIKSLPLPLKNLRVL 126 (418)
T ss_pred hhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCC-CccccCcccccceEEE
Confidence 344444443222233455666677888888877643344456777778888888888888665 233444 255677777
Q ss_pred eccCCCCCChHHHHHHHhcCCCCcEEecCCC
Q 012001 232 VLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (473)
Q Consensus 232 ~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (473)
.+.+ +.+.-.....+...+|.+++|.++.+
T Consensus 127 VLNg-T~L~w~~~~s~l~~lP~vtelHmS~N 156 (418)
T KOG2982|consen 127 VLNG-TGLSWTQSTSSLDDLPKVTELHMSDN 156 (418)
T ss_pred EEcC-CCCChhhhhhhhhcchhhhhhhhccc
Confidence 7777 44444433334444566666655543
No 33
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.82 E-value=5.6e-09 Score=86.89 Aligned_cols=91 Identities=16% Similarity=0.143 Sum_probs=43.3
Q ss_pred HHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh-hCCCCCCeeEecCCcCChhHHHHH
Q 012001 245 ASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL-HNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 245 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
..++..+..++.+++.++....-..+..+...+|.|+.|+++.+...+ .+ ..+ ....+|+.|-+.|..+.-.....+
T Consensus 64 ~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~ 141 (418)
T KOG2982|consen 64 MLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DI-KSLPLPLKNLRVLVLNGTGLSWTQSTSS 141 (418)
T ss_pred HHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-cc-ccCcccccceEEEEEcCCCCChhhhhhh
Confidence 334444555566666555432223444555556666666665542211 11 111 233455666666555544444444
Q ss_pred HhhCCCCCeEecCC
Q 012001 324 GNWHGSLKELSLSK 337 (473)
Q Consensus 324 ~~~~~~L~~L~l~~ 337 (473)
...+|.+++|.++.
T Consensus 142 l~~lP~vtelHmS~ 155 (418)
T KOG2982|consen 142 LDDLPKVTELHMSD 155 (418)
T ss_pred hhcchhhhhhhhcc
Confidence 44455555555544
No 34
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.81 E-value=1.3e-07 Score=77.98 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=19.6
Q ss_pred cCcccceeecccccc---CchhHHHhhhCCCCCCeeEecCCcCCh
Q 012001 276 GADYLQQLILAYSFW---VSADLSKCLHNFPMLQSIKFEDCPVAR 317 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~---~~~~~~~~l~~~~~L~~L~l~~~~~~~ 317 (473)
+||+|+..+++++.. ....+...+.+...|++|.+++|.++.
T Consensus 90 kcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp 134 (388)
T COG5238 90 KCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGP 134 (388)
T ss_pred cCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCc
Confidence 345555555544322 112233344455556666666655443
No 35
>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]. This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.
Probab=98.64 E-value=1.5e-08 Score=62.20 Aligned_cols=39 Identities=26% Similarity=0.377 Sum_probs=33.2
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
+|.+||+|++.+||+ +++ ..|+.+++.|||+|++++...
T Consensus 2 ~~~~LP~~il~~Il~-~l~-~~~~~~l~~vsk~~~~~~~~~ 40 (48)
T PF00646_consen 2 PLSDLPDEILQEILS-YLD-PKDLLRLSLVSKRWRSLVDSP 40 (48)
T ss_dssp HHHHS-HHHHHHHHH-TS--HHHHHHHCTT-HHHHHHHTTH
T ss_pred CHHHCCHHHHHHHHH-HCc-HHHHHHHHHHhhHHHHHHcCC
Confidence 578999999999999 997 999999999999999987654
No 36
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.64 E-value=2.3e-08 Score=79.45 Aligned_cols=105 Identities=23% Similarity=0.242 Sum_probs=36.4
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~ 431 (473)
+.+|+.|++++|. ++.. ..+ ..+++|+.|++++ +.++..+ ..+...+|+|++|++++|.+.+. .+..++.+|+
T Consensus 41 l~~L~~L~Ls~N~-I~~l--~~l-~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~ 114 (175)
T PF14580_consen 41 LDKLEVLDLSNNQ-ITKL--EGL-PGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSNNKISDLNELEPLSSLPK 114 (175)
T ss_dssp -TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT
T ss_pred hcCCCEEECCCCC-Cccc--cCc-cChhhhhhcccCC-CCCCccc-cchHHhCCcCCEEECcCCcCCChHHhHHHHcCCC
Confidence 3455666665544 3321 111 2356666666666 3344321 11222467777777777766552 2344556777
Q ss_pred CCeeecCCCCCcchH-HHH-HHHhcCccCCeeecC
Q 012001 432 LSSLKLGICSNITDE-GLK-HVGSTCSMLKELDLY 464 (473)
Q Consensus 432 L~~L~l~~~~~l~~~-~~~-~~~~~~~~L~~L~l~ 464 (473)
|+.|++.+| .+++. ... .++..+|+|+.||-.
T Consensus 115 L~~L~L~~N-Pv~~~~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 115 LRVLSLEGN-PVCEKKNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp --EEE-TT--GGGGSTTHHHHHHHH-TT-SEETTE
T ss_pred cceeeccCC-cccchhhHHHHHHHHcChhheeCCE
Confidence 777777777 34322 222 334467777777643
No 37
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=98.59 E-value=8.8e-07 Score=73.16 Aligned_cols=194 Identities=20% Similarity=0.188 Sum_probs=116.3
Q ss_pred HHHhcCCCCcEEecCCCCccc--hHHHHHHHhcCcccceeeccccccCchh----HH---------HhhhCCCCCCeeEe
Q 012001 246 SVEYSCKSLKALNLSKCQNIS--HVGLSSLIKGADYLQQLILAYSFWVSAD----LS---------KCLHNFPMLQSIKF 310 (473)
Q Consensus 246 ~l~~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~l~~~~~~~~~----~~---------~~l~~~~~L~~L~l 310 (473)
++.. ||+|+..+++++.+-. ...+..++.+...|++|.+++|. +... +. .-..+-|.|+.+..
T Consensus 87 aLlk-cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~aG~rigkal~~la~nKKaa~kp~Le~vic 164 (388)
T COG5238 87 ALLK-CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNG-LGPIAGGRIGKALFHLAYNKKAADKPKLEVVIC 164 (388)
T ss_pred HHhc-CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCC-CCccchhHHHHHHHHHHHHhhhccCCCceEEEe
Confidence 3444 7888888888765322 23556667777888888887763 2211 11 11234578888888
Q ss_pred cCCcCChhH---HHHHHhhCCCCCeEecCCCCCCChHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHHHH---hcCC
Q 012001 311 EDCPVARSG---IKAIGNWHGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASINSIT---KTCT 380 (473)
Q Consensus 311 ~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~ 380 (473)
..|++.... .......-.+|+.+.+.. +++...++..++ ..+.+|+.|++..+. ++-.+-..++ ..++
T Consensus 165 grNRlengs~~~~a~~l~sh~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDNt-ft~~gS~~La~al~~W~ 242 (388)
T COG5238 165 GRNRLENGSKELSAALLESHENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDNT-FTLEGSRYLADALCEWN 242 (388)
T ss_pred ccchhccCcHHHHHHHHHhhcCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeeccccc-hhhhhHHHHHHHhcccc
Confidence 887654332 222332335888888877 677666554432 345788888888765 4444433333 3567
Q ss_pred CCCEEEccCCCCCCHHHHHHHHh-----cCccCCeeeecccccChhhh-----hhhh--cCCCCCeeecCCCCCcch
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVNDEGL-----KSIS--RCSKLSSLKLGICSNITD 445 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~-----~~l~--~~~~L~~L~l~~~~~l~~ 445 (473)
.|+.|.+..|- ++..+...... ..|+|..|-..+|.+....+ ..+. ..|-|..|.+.+| .++.
T Consensus 243 ~lrEL~lnDCl-ls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngN-r~~E 317 (388)
T COG5238 243 LLRELRLNDCL-LSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGN-RIKE 317 (388)
T ss_pred hhhhccccchh-hccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccC-cchh
Confidence 78888888876 34333333322 35788888777764433322 2222 3677888888888 6654
No 38
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.58 E-value=1.6e-07 Score=92.51 Aligned_cols=255 Identities=15% Similarity=0.129 Sum_probs=139.7
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
.+...|++.+.. ++..+. .+ .++|+.|+++++ .++..+.. ..++|+.|++++|.++. ....+ .++|+
T Consensus 178 ~~~~~L~L~~~~-LtsLP~-~I---p~~L~~L~Ls~N-~LtsLP~~----l~~nL~~L~Ls~N~Lts-LP~~l--~~~L~ 244 (754)
T PRK15370 178 NNKTELRLKILG-LTTIPA-CI---PEQITTLILDNN-ELKSLPEN----LQGNIKTLYANSNQLTS-IPATL--PDTIQ 244 (754)
T ss_pred cCceEEEeCCCC-cCcCCc-cc---ccCCcEEEecCC-CCCcCChh----hccCCCEEECCCCcccc-CChhh--hcccc
Confidence 456677776642 332111 11 256888888775 34433322 23578888888876652 22222 34688
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
.|++++|. +...+ ..+ ..+|+.|+++++. +.. ++. .-.++|+.|+++++. +. .++..+ .++|+.|+
T Consensus 245 ~L~Ls~N~-L~~LP-~~l---~s~L~~L~Ls~N~-L~~--LP~--~l~~sL~~L~Ls~N~-Lt-~LP~~l--p~sL~~L~ 310 (754)
T PRK15370 245 EMELSINR-ITELP-ERL---PSALQSLDLFHNK-ISC--LPE--NLPEELRYLSVYDNS-IR-TLPAHL--PSGITHLN 310 (754)
T ss_pred EEECcCCc-cCcCC-hhH---hCCCCEEECcCCc-cCc--ccc--ccCCCCcEEECCCCc-cc-cCcccc--hhhHHHHH
Confidence 88888753 33221 112 2478888887654 221 111 112478888887763 22 122111 13677788
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC 389 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 389 (473)
+++|.+... +.. ..++|+.|.+++| .++. ++..+ .++|+.|++++|. ++.. +.. ..++|+.|++++
T Consensus 311 Ls~N~Lt~L-P~~---l~~sL~~L~Ls~N-~Lt~--LP~~l--~~sL~~L~Ls~N~-L~~L--P~~--lp~~L~~LdLs~ 376 (754)
T PRK15370 311 VQSNSLTAL-PET---LPPGLKTLEAGEN-ALTS--LPASL--PPELQVLDVSKNQ-ITVL--PET--LPPTITTLDVSR 376 (754)
T ss_pred hcCCccccC-Ccc---ccccceeccccCC-cccc--CChhh--cCcccEEECCCCC-CCcC--Chh--hcCCcCEEECCC
Confidence 887776532 111 2367888888774 3432 22212 3688888888775 4422 111 136788888888
Q ss_pred CCCCCHHHHHHHHhcCccCCeeeecccccChhh---hhhhhcCCCCCeeecCCCCCcchHHHHHH
Q 012001 390 CKLVSWEAFVLIGQQCQYLEELDITENEVNDEG---LKSISRCSKLSSLKLGICSNITDEGLKHV 451 (473)
Q Consensus 390 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~---~~~l~~~~~L~~L~l~~~~~l~~~~~~~~ 451 (473)
|. ++... ..+. +.|+.|++++|.++... ......++++..|++.+| .++...+..+
T Consensus 377 N~-Lt~LP-~~l~---~sL~~LdLs~N~L~~LP~sl~~~~~~~~~l~~L~L~~N-pls~~tl~~L 435 (754)
T PRK15370 377 NA-LTNLP-ENLP---AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYN-PFSERTIQNM 435 (754)
T ss_pred Cc-CCCCC-HhHH---HHHHHHhhccCCcccCchhHHHHhhcCCCccEEEeeCC-CccHHHHHHH
Confidence 65 43211 1121 35788888888776432 112234578888888888 6765554443
No 39
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.55 E-value=1.8e-08 Score=80.11 Aligned_cols=107 Identities=21% Similarity=0.226 Sum_probs=40.2
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhh-hcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSI-SRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l-~~~~~ 431 (473)
+..+++|++.++. ++. ++.+...+.+|+.|++++|.-.+-+++. .++.|+.|++++|.+++.+. .+ ..+|+
T Consensus 18 ~~~~~~L~L~~n~-I~~--Ie~L~~~l~~L~~L~Ls~N~I~~l~~l~----~L~~L~~L~L~~N~I~~i~~-~l~~~lp~ 89 (175)
T PF14580_consen 18 PVKLRELNLRGNQ-IST--IENLGATLDKLEVLDLSNNQITKLEGLP----GLPRLKTLDLSNNRISSISE-GLDKNLPN 89 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--TT--------TT--EEE--SS---S-CH-HHHHH-TT
T ss_pred ccccccccccccc-ccc--ccchhhhhcCCCEEECCCCCCccccCcc----ChhhhhhcccCCCCCCcccc-chHHhCCc
Confidence 3467888888765 442 3344345789999999996633323433 67999999999999988642 33 36899
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|+.|.+++| ++.+.+--...+.+|+|+.|++.+||-
T Consensus 90 L~~L~L~~N-~I~~l~~l~~L~~l~~L~~L~L~~NPv 125 (175)
T PF14580_consen 90 LQELYLSNN-KISDLNELEPLSSLPKLRVLSLEGNPV 125 (175)
T ss_dssp --EEE-TTS----SCCCCGGGGG-TT--EEE-TT-GG
T ss_pred CCEEECcCC-cCCChHHhHHHHcCCCcceeeccCCcc
Confidence 999999999 887533223334899999999999884
No 40
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.53 E-value=2.5e-08 Score=99.83 Aligned_cols=132 Identities=23% Similarity=0.162 Sum_probs=63.5
Q ss_pred CCcCceeecccCCC-CCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCC
Q 012001 175 CRKLKLLCLKWCIR-VTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKS 253 (473)
Q Consensus 175 ~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~ 253 (473)
++.|++|-+.++.. +...+ ..++..+|.|+.|++++|.-....+..++++-+|+.|++++ +.+... +..+.+ +..
T Consensus 544 ~~~L~tLll~~n~~~l~~is-~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~-t~I~~L-P~~l~~-Lk~ 619 (889)
T KOG4658|consen 544 NPKLRTLLLQRNSDWLLEIS-GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSD-TGISHL-PSGLGN-LKK 619 (889)
T ss_pred CCccceEEEeecchhhhhcC-HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccC-CCcccc-chHHHH-HHh
Confidence 45666666655431 11111 12233566666677666543334555566666666666666 334422 222333 556
Q ss_pred CcEEecCCCCccchHHHHHHHhcCcccceeeccccc-cCchhHHHhhhCCCCCCeeEecC
Q 012001 254 LKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSF-WVSADLSKCLHNFPMLQSIKFED 312 (473)
Q Consensus 254 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~L~~L~l~~ 312 (473)
|.+|++......... ......+++|++|.+.... ..+......+.++.+|+.+.+..
T Consensus 620 L~~Lnl~~~~~l~~~--~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 620 LIYLNLEVTGRLESI--PGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITI 677 (889)
T ss_pred hheeccccccccccc--cchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeec
Confidence 666666544322211 2333445666666665432 22223333444455555555433
No 41
>smart00256 FBOX A Receptor for Ubiquitination Targets.
Probab=98.45 E-value=2e-07 Score=55.05 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=32.2
Q ss_pred CcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 15 LSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 15 LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
||+|++..||. +++ ..|+.+++.|||+|+.++...
T Consensus 1 lP~~ll~~I~~-~l~-~~d~~~~~~vc~~~~~~~~~~ 35 (41)
T smart00256 1 LPDEILEEILS-KLP-PKDLLRLRKVSRRWRSLIDSH 35 (41)
T ss_pred CCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhcCh
Confidence 79999999999 997 999999999999999987544
No 42
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.44 E-value=1.4e-07 Score=78.89 Aligned_cols=126 Identities=19% Similarity=0.158 Sum_probs=51.4
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
.|+++++++ +.++. +....+-.|.++.|+++++.-..... + ..+++|+.|+++++. ++. +..+-..+-|+
T Consensus 285 ~LtelDLS~-N~I~~--iDESvKL~Pkir~L~lS~N~i~~v~n---L-a~L~~L~~LDLS~N~-Ls~--~~Gwh~KLGNI 354 (490)
T KOG1259|consen 285 ELTELDLSG-NLITQ--IDESVKLAPKLRRLILSQNRIRTVQN---L-AELPQLQLLDLSGNL-LAE--CVGWHLKLGNI 354 (490)
T ss_pred hhhhccccc-cchhh--hhhhhhhccceeEEeccccceeeehh---h-hhcccceEeecccch-hHh--hhhhHhhhcCE
Confidence 344555554 23321 22223334555555555443222111 1 234555555555422 211 11122234455
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|.+..|.+.+. ..+.++-+|..|++++| ++....-..-++++|.|+++.+.++|
T Consensus 355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N-~Ie~ldeV~~IG~LPCLE~l~L~~NP 410 (490)
T KOG1259|consen 355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSN-QIEELDEVNHIGNLPCLETLRLTGNP 410 (490)
T ss_pred eeeehhhhhHhhh--hhhHhhhhheecccccc-chhhHHHhcccccccHHHHHhhcCCC
Confidence 5555555544331 23334445555555555 44432212222245555555555544
No 43
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=98.35 E-value=1.4e-06 Score=86.03 Aligned_cols=254 Identities=15% Similarity=0.128 Sum_probs=140.3
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
.+...|++++. .++..+. .+ .++|+.|++.++. ++..+... .++|+.|+++++. +...+.. ..++|
T Consensus 178 ~~~~~L~L~~~-~LtsLP~-~I--p~~L~~L~Ls~N~-LtsLP~~l----~~nL~~L~Ls~N~-LtsLP~~----l~~~L 243 (754)
T PRK15370 178 NNKTELRLKIL-GLTTIPA-CI--PEQITTLILDNNE-LKSLPENL----QGNIKTLYANSNQ-LTSIPAT----LPDTI 243 (754)
T ss_pred cCceEEEeCCC-CcCcCCc-cc--ccCCcEEEecCCC-CCcCChhh----ccCCCEEECCCCc-cccCChh----hhccc
Confidence 45677887765 3443321 12 2468888887763 44322111 3578888887753 4332211 12468
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.|++++|.+.. ....+ ..+|+.|++++ +.+...+ ..+ .++|+.|+++++.. +.. ...+ .++|+.|+
T Consensus 244 ~~L~Ls~N~L~~-LP~~l--~s~L~~L~Ls~-N~L~~LP-~~l---~~sL~~L~Ls~N~L-t~L--P~~l--p~sL~~L~ 310 (754)
T PRK15370 244 QEMELSINRITE-LPERL--PSALQSLDLFH-NKISCLP-ENL---PEELRYLSVYDNSI-RTL--PAHL--PSGITHLN 310 (754)
T ss_pred cEEECcCCccCc-CChhH--hCCCCEEECcC-CccCccc-ccc---CCCCcEEECCCCcc-ccC--cccc--hhhHHHHH
Confidence 888888886652 22222 24688888876 3444221 111 35788888887652 211 1101 13577777
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++.. . .++.. -.++|+.|++.+|.++.- +..+ +++|+.|+++++ .++. ++..+ .++|+.|++++|
T Consensus 311 Ls~N~L-t-~LP~~--l~~sL~~L~Ls~N~Lt~L-P~~l---~~sL~~L~Ls~N-~L~~--LP~~l--p~~L~~LdLs~N 377 (754)
T PRK15370 311 VQSNSL-T-ALPET--LPPGLKTLEAGENALTSL-PASL---PPELQVLDVSKN-QITV--LPETL--PPTITTLDVSRN 377 (754)
T ss_pred hcCCcc-c-cCCcc--ccccceeccccCCccccC-Chhh---cCcccEEECCCC-CCCc--CChhh--cCCcCEEECCCC
Confidence 776532 2 11211 135788888888776542 2222 368888888874 4442 22222 267888888877
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCH--HHHHHHHhcCccCCeeeecccccChhhhh
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSW--EAFVLIGQQCQYLEELDITENEVNDEGLK 424 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 424 (473)
. ++.... .+ .+.|+.|+++++. ++. ..+..+...++++..|++.+|.++...+.
T Consensus 378 ~-Lt~LP~-~l---~~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Npls~~tl~ 433 (754)
T PRK15370 378 A-LTNLPE-NL---PAALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNPFSERTIQ 433 (754)
T ss_pred c-CCCCCH-hH---HHHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCCccHHHHH
Confidence 5 442211 11 1357777777754 432 23444444567888888888887765444
No 44
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=98.29 E-value=5.3e-07 Score=90.51 Aligned_cols=34 Identities=9% Similarity=-0.093 Sum_probs=16.2
Q ss_pred CcccCcHHHHHHHHhhhcCC--hhhhhhhhhhhhhHHH
Q 012001 11 PFDFLSEEIIFNILDHLNND--PFARKSFSLTCRNFYS 46 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~--~~d~~~~~~vc~~w~~ 46 (473)
+.+.|| +-+-+-|- |+.- ...-...-.+...|-+
T Consensus 404 Syd~L~-~~lK~CFL-ycalFPED~~I~~e~Li~yWia 439 (889)
T KOG4658|consen 404 SYDNLP-EELKSCFL-YCALFPEDYEIKKEKLIEYWIA 439 (889)
T ss_pred cHhhhh-HHHHHHHH-hhccCCcccccchHHHHHHHHh
Confidence 456666 44445554 3321 2333445555566653
No 45
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.26 E-value=2.3e-07 Score=60.32 Aligned_cols=60 Identities=28% Similarity=0.262 Sum_probs=34.0
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|+|++|++++|.++......+..+++|++|++++| .++.... .....+++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNN-NLTSIPP-DAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSS-SESEEET-TTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCC-ccCccCH-HHHcCCCCCCEEeCcCCc
Confidence 45666666666666555555556666666666666 5553222 223356666666666653
No 46
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.5e-06 Score=68.72 Aligned_cols=83 Identities=14% Similarity=0.302 Sum_probs=54.5
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
++.++-++ ..+..+++..+ ..++.++.|.+.+|..+.|..+..+.+-.++|+.|++++|+.||+.++..+. .+++|+
T Consensus 103 IeaVDAsd-s~I~~eGle~L-~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 103 IEAVDASD-SSIMYEGLEHL-RDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred EEEEecCC-chHHHHHHHHH-hccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 34444454 34555555543 3566777777777777777777777666677777777777777777777666 667777
Q ss_pred eeeecc
Q 012001 410 ELDITE 415 (473)
Q Consensus 410 ~L~l~~ 415 (473)
.|++.+
T Consensus 180 ~L~l~~ 185 (221)
T KOG3864|consen 180 RLHLYD 185 (221)
T ss_pred HHHhcC
Confidence 776655
No 47
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.21 E-value=1.5e-06 Score=68.70 Aligned_cols=104 Identities=18% Similarity=0.242 Sum_probs=82.6
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
.++.++-+++.+..+++..+. .++.++.|.+.+|..+.|..+..+-...++|+.|+|++|+.||+.++..+. .+++|+
T Consensus 102 ~IeaVDAsds~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~-~lknLr 179 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLL-KLKNLR 179 (221)
T ss_pred eEEEEecCCchHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHH-HhhhhH
Confidence 467778888888889999987 889999999999999999998888777799999999999999999998774 689999
Q ss_pred EEEccCCCCCCHHHH--HHHHhcCccCC
Q 012001 384 SLRMECCKLVSWEAF--VLIGQQCQYLE 409 (473)
Q Consensus 384 ~L~l~~~~~~~~~~~--~~~~~~~~~L~ 409 (473)
.|.+.+-..+...+. ..+...+|+++
T Consensus 180 ~L~l~~l~~v~~~e~~~~~Le~aLP~c~ 207 (221)
T KOG3864|consen 180 RLHLYDLPYVANLELVQRQLEEALPKCD 207 (221)
T ss_pred HHHhcCchhhhchHHHHHHHHHhCcccc
Confidence 999987655543222 22333455544
No 48
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=98.18 E-value=1.3e-08 Score=77.56 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=75.7
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
..+++.|.++++... .++..+..+.+|+.|++.++.+.+ .+..+. .+++|+.|.++- +.+. .++.-+.++|.|
T Consensus 32 ~s~ITrLtLSHNKl~--~vppnia~l~nlevln~~nnqie~-lp~~is-sl~klr~lnvgm-nrl~--~lprgfgs~p~l 104 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT--VVPPNIAELKNLEVLNLSNNQIEE-LPTSIS-SLPKLRILNVGM-NRLN--ILPRGFGSFPAL 104 (264)
T ss_pred hhhhhhhhcccCcee--ecCCcHHHhhhhhhhhcccchhhh-cChhhh-hchhhhheecch-hhhh--cCccccCCCchh
Confidence 345666666665322 334455666677777777766543 222233 566666666654 2221 123334556666
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
+.|++.++. +....++.-.-.+..|+-|.++..+ + +.++.-...+.+|+.|.+.+|.+-.. +..++.+..|++|+
T Consensus 105 evldltynn-l~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdndll~l-pkeig~lt~lrelh 179 (264)
T KOG0617|consen 105 EVLDLTYNN-LNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDNDLLSL-PKEIGDLTRLRELH 179 (264)
T ss_pred hhhhccccc-cccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCchhhC-cHHHHHHHHHHHHh
Confidence 666666543 3322222111122344444444322 1 11111122556666666666544332 24455566666666
Q ss_pred cCCCCCcc
Q 012001 437 LGICSNIT 444 (473)
Q Consensus 437 l~~~~~l~ 444 (473)
+.+| .++
T Consensus 180 iqgn-rl~ 186 (264)
T KOG0617|consen 180 IQGN-RLT 186 (264)
T ss_pred cccc-eee
Confidence 6666 554
No 49
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.06 E-value=1.2e-06 Score=56.94 Aligned_cols=59 Identities=20% Similarity=0.161 Sum_probs=46.6
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|+|+.|++++| .++.-.-..+. .+++|+.|++++|.++......+..+++|++|++++|
T Consensus 1 p~L~~L~l~~n-~l~~i~~~~f~-~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 1 PNLESLDLSNN-KLTEIPPDSFS-NLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TTESEEEETSS-TESEECTTTTT-TGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred CcCcEEECCCC-CCCccCHHHHc-CCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 57788888875 35433222232 7899999999999999888788889999999999998
No 50
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.06 E-value=1.5e-06 Score=72.99 Aligned_cols=101 Identities=17% Similarity=0.227 Sum_probs=43.8
Q ss_pred CCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH-HHHHHHHhcCc
Q 012001 328 GSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW-EAFVLIGQQCQ 406 (473)
Q Consensus 328 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~ 406 (473)
|.++.|+++. +.+...+ . ++.+++|+.|+++++. ++ .+...-..+-+++.|.++++. +.+ .++. .+-
T Consensus 307 Pkir~L~lS~-N~i~~v~--n-La~L~~L~~LDLS~N~-Ls--~~~Gwh~KLGNIKtL~La~N~-iE~LSGL~----KLY 374 (490)
T KOG1259|consen 307 PKLRRLILSQ-NRIRTVQ--N-LAELPQLQLLDLSGNL-LA--ECVGWHLKLGNIKTLKLAQNK-IETLSGLR----KLY 374 (490)
T ss_pred cceeEEeccc-cceeeeh--h-hhhcccceEeecccch-hH--hhhhhHhhhcCEeeeehhhhh-HhhhhhhH----hhh
Confidence 5555555555 3333211 1 3344555555555543 11 111111134455555555422 211 1222 233
Q ss_pred cCCeeeecccccChh-hhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDE-GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~ 440 (473)
+|..|++++|+|... .+..++++|.|+.+.+.+|
T Consensus 375 SLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 375 SLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGN 409 (490)
T ss_pred hheeccccccchhhHHHhcccccccHHHHHhhcCC
Confidence 455555555544432 2334555555555555555
No 51
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=97.95 E-value=6.9e-08 Score=73.78 Aligned_cols=32 Identities=34% Similarity=0.381 Sum_probs=13.0
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
+++.|.+++++++ ...+.++.+.+|+.|++.+
T Consensus 34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~n 65 (264)
T KOG0617|consen 34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSN 65 (264)
T ss_pred hhhhhhcccCcee-ecCCcHHHhhhhhhhhccc
Confidence 3344444444433 2333344444444444443
No 52
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.90 E-value=4.9e-06 Score=78.43 Aligned_cols=107 Identities=17% Similarity=0.151 Sum_probs=64.0
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh-cCccCCeeeecccccChhhhhhhhc
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-QCQYLEELDITENEVNDEGLKSISR 428 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (473)
++-+|.|+.|+++.+. +++.. ....|+.|+.|+|+++. +.. +..+.. .|. |..|.+.+|.++.. ..+.+
T Consensus 183 Lqll~ale~LnLshNk-~~~v~---~Lr~l~~LkhLDlsyN~-L~~--vp~l~~~gc~-L~~L~lrnN~l~tL--~gie~ 252 (1096)
T KOG1859|consen 183 LQLLPALESLNLSHNK-FTKVD---NLRRLPKLKHLDLSYNC-LRH--VPQLSMVGCK-LQLLNLRNNALTTL--RGIEN 252 (1096)
T ss_pred HHHHHHhhhhccchhh-hhhhH---HHHhcccccccccccch-hcc--ccccchhhhh-heeeeecccHHHhh--hhHHh
Confidence 4445677778887765 44322 22467888888887633 322 112211 333 77788887766543 34667
Q ss_pred CCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+.+|+.|++++| -+.+..--.....+..|+.|.+.|+|
T Consensus 253 LksL~~LDlsyN-ll~~hseL~pLwsLs~L~~L~LeGNP 290 (1096)
T KOG1859|consen 253 LKSLYGLDLSYN-LLSEHSELEPLWSLSSLIVLWLEGNP 290 (1096)
T ss_pred hhhhhccchhHh-hhhcchhhhHHHHHHHHHHHhhcCCc
Confidence 778888888887 55443322233356678888888776
No 53
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.82 E-value=2.2e-06 Score=80.68 Aligned_cols=211 Identities=18% Similarity=0.203 Sum_probs=115.1
Q ss_pred HHHHHhhCCCCcEEeeccccCCC-CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHH
Q 012001 194 VELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSS 272 (473)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 272 (473)
+..+..-.++++.|.+-...-.+ ..+-.+..+..|++|.+.+|+--+..++..+.. .|++|.-.+. -.++..
T Consensus 76 Lq~i~d~lqkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~~~GL~~lr~---qLe~LIC~~S----l~Al~~ 148 (1096)
T KOG1859|consen 76 LQRILDFLQKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLSTAKGLQELRH---QLEKLICHNS----LDALRH 148 (1096)
T ss_pred HHHHHHHHhhheeeeecccCCCCCCCCceeccccceeeEEecCcchhhhhhhHHHHH---hhhhhhhhcc----HHHHHH
Confidence 34444455666666665542211 124456678888999988876544444433333 4555433211 122333
Q ss_pred HHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcC--ChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH
Q 012001 273 LIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV--ARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV 350 (473)
Q Consensus 273 ~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (473)
++..+- ..+.+. + ....|...+.+.|.+ .|..++. ++.|+.|++++ +.+++.+ .+
T Consensus 149 v~ascg----------gd~~ns-~----~Wn~L~~a~fsyN~L~~mD~SLql----l~ale~LnLsh-Nk~~~v~---~L 205 (1096)
T KOG1859|consen 149 VFASCG----------GDISNS-P----VWNKLATASFSYNRLVLMDESLQL----LPALESLNLSH-NKFTKVD---NL 205 (1096)
T ss_pred HHHHhc----------cccccc-h----hhhhHhhhhcchhhHHhHHHHHHH----HHHhhhhccch-hhhhhhH---HH
Confidence 332210 000000 0 001334444444442 2334433 36888888888 5665433 46
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRC 429 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~ 429 (473)
..|+.|++|+|+++. +....-... ..|. |..|.++++.--+-.+++ ++.+|+.||+++|-+.+-. +.-+..+
T Consensus 206 r~l~~LkhLDlsyN~-L~~vp~l~~-~gc~-L~~L~lrnN~l~tL~gie----~LksL~~LDlsyNll~~hseL~pLwsL 278 (1096)
T KOG1859|consen 206 RRLPKLKHLDLSYNC-LRHVPQLSM-VGCK-LQLLNLRNNALTTLRGIE----NLKSLYGLDLSYNLLSEHSELEPLWSL 278 (1096)
T ss_pred Hhcccccccccccch-hccccccch-hhhh-heeeeecccHHHhhhhHH----hhhhhhccchhHhhhhcchhhhHHHHH
Confidence 678899999998764 332211111 1233 889999885432334444 7789999999998666532 2234457
Q ss_pred CCCCeeecCCCC
Q 012001 430 SKLSSLKLGICS 441 (473)
Q Consensus 430 ~~L~~L~l~~~~ 441 (473)
..|+.|.|.||+
T Consensus 279 s~L~~L~LeGNP 290 (1096)
T KOG1859|consen 279 SSLIVLWLEGNP 290 (1096)
T ss_pred HHHHHHhhcCCc
Confidence 789999999993
No 54
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.55 E-value=0.00014 Score=43.02 Aligned_cols=38 Identities=34% Similarity=0.517 Sum_probs=26.8
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
++|++|++++|.+++.. ..++++++|+.|++++| .+++
T Consensus 1 ~~L~~L~l~~N~i~~l~-~~l~~l~~L~~L~l~~N-~i~~ 38 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLP-PELSNLPNLETLNLSNN-PISD 38 (44)
T ss_dssp TT-SEEEETSSS-SSHG-GHGTTCTTSSEEEETSS-CCSB
T ss_pred CcceEEEccCCCCcccC-chHhCCCCCCEEEecCC-CCCC
Confidence 46888888888888654 24778888888888888 6663
No 55
>PLN03150 hypothetical protein; Provisional
Probab=97.46 E-value=0.00022 Score=70.21 Aligned_cols=108 Identities=15% Similarity=0.108 Sum_probs=63.3
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
++.|+++++. +... +......+++|+.|+++++. +....-..+. .+++|+.|++++|.++...+..++++++|+.|
T Consensus 420 v~~L~L~~n~-L~g~-ip~~i~~L~~L~~L~Ls~N~-l~g~iP~~~~-~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L 495 (623)
T PLN03150 420 IDGLGLDNQG-LRGF-IPNDISKLRHLQSINLSGNS-IRGNIPPSLG-SITSLEVLDLSYNSFNGSIPESLGQLTSLRIL 495 (623)
T ss_pred EEEEECCCCC-cccc-CCHHHhCCCCCCEEECCCCc-ccCcCChHHh-CCCCCCEEECCCCCCCCCCchHHhcCCCCCEE
Confidence 5667776654 3222 11223457788888887754 3322222232 67788888888887777666677778888888
Q ss_pred ecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++++| .++...-..+.....++..+++.+|+.
T Consensus 496 ~Ls~N-~l~g~iP~~l~~~~~~~~~l~~~~N~~ 527 (623)
T PLN03150 496 NLNGN-SLSGRVPAALGGRLLHRASFNFTDNAG 527 (623)
T ss_pred ECcCC-cccccCChHHhhccccCceEEecCCcc
Confidence 88887 565322222332334556666665544
No 56
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.15 E-value=0.00046 Score=64.60 Aligned_cols=130 Identities=20% Similarity=0.204 Sum_probs=57.7
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++|+.|++.+|++.+-..... ..++|+.|++++ +.+.+ ++........|+++.++++..+... ....
T Consensus 158 ~~~~l~~L~~L~l~~N~l~~l~~~~~--~~~~L~~L~ls~-N~i~~--l~~~~~~~~~L~~l~~~~N~~~~~~---~~~~ 229 (394)
T COG4886 158 PLRNLPNLKNLDLSFNDLSDLPKLLS--NLSNLNNLDLSG-NKISD--LPPEIELLSALEELDLSNNSIIELL---SSLS 229 (394)
T ss_pred hhhccccccccccCCchhhhhhhhhh--hhhhhhheeccC-Ccccc--CchhhhhhhhhhhhhhcCCcceecc---hhhh
Confidence 34455555555555555443222210 235555555555 33332 2222222233555555554212111 1112
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
.+.++..+.+.+.. +.+ +......+++++.|++++|.+++... ++...+++.|+++++
T Consensus 230 ~~~~l~~l~l~~n~-~~~--~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n 287 (394)
T COG4886 230 NLKNLSGLELSNNK-LED--LPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGN 287 (394)
T ss_pred hcccccccccCCce-eee--ccchhccccccceecccccccccccc--ccccCccCEEeccCc
Confidence 33444444433311 211 01112255566666666666666543 555666666666665
No 57
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.00016 Score=60.52 Aligned_cols=111 Identities=21% Similarity=0.323 Sum_probs=59.0
Q ss_pred CCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH-HHHHHHHhcC
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW-EAFVLIGQQC 405 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 405 (473)
+.+.++|+.-+| +++|.. ++..+|.|+.|.++-+. ++. +..+ ..|.+|++|.+..+. |.+ ..+..+. ++
T Consensus 18 l~~vkKLNcwg~-~L~DIs---ic~kMp~lEVLsLSvNk-Iss--L~pl-~rCtrLkElYLRkN~-I~sldEL~YLk-nl 87 (388)
T KOG2123|consen 18 LENVKKLNCWGC-GLDDIS---ICEKMPLLEVLSLSVNK-ISS--LAPL-QRCTRLKELYLRKNC-IESLDELEYLK-NL 87 (388)
T ss_pred HHHhhhhcccCC-CccHHH---HHHhcccceeEEeeccc-ccc--chhH-HHHHHHHHHHHHhcc-cccHHHHHHHh-cC
Confidence 346666766665 455433 35566777777776543 332 2222 356777777776532 433 3344444 67
Q ss_pred ccCCeeeecccccChh-hhhh----hhcCCCCCeeecCCCCCcchHHHHH
Q 012001 406 QYLEELDITENEVNDE-GLKS----ISRCSKLSSLKLGICSNITDEGLKH 450 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~-~~~~----l~~~~~L~~L~l~~~~~l~~~~~~~ 450 (473)
|+|+.|+|..|.-... |..+ +.-+|+|+.|+ |..++...+..
T Consensus 88 psLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD---nv~VteeEle~ 134 (388)
T KOG2123|consen 88 PSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD---NVPVTEEELEE 134 (388)
T ss_pred chhhhHhhccCCcccccchhHHHHHHHHcccchhcc---CccccHHHHHH
Confidence 7777777766533222 2222 22366666663 33555555543
No 58
>PLN03150 hypothetical protein; Provisional
Probab=97.09 E-value=0.0011 Score=65.43 Aligned_cols=106 Identities=16% Similarity=0.149 Sum_probs=52.0
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
++.|++.++.+....+..+. .+++|+.|+++++ .+.. .++..+..+++|+.|+++++. ++.. ++.....+++|+.
T Consensus 420 v~~L~L~~n~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~-lsg~-iP~~l~~L~~L~~ 494 (623)
T PLN03150 420 IDGLGLDNQGLRGFIPNDIS-KLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNS-FNGS-IPESLGQLTSLRI 494 (623)
T ss_pred EEEEECCCCCccccCCHHHh-CCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCC-CCCC-CchHHhcCCCCCE
Confidence 55566666655544444444 5566666666653 3322 133344556666666666654 3221 1222235666666
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
|+++++. ++...-..+.....++..+++.+|
T Consensus 495 L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N 525 (623)
T PLN03150 495 LNLNGNS-LSGRVPAALGGRLLHRASFNFTDN 525 (623)
T ss_pred EECcCCc-ccccCChHHhhccccCceEEecCC
Confidence 6666643 332222222212234555666655
No 59
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=97.07 E-value=0.00063 Score=63.67 Aligned_cols=173 Identities=20% Similarity=0.257 Sum_probs=111.5
Q ss_pred cccceeeccccccCchhHHHhhhCC-CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|++.+... ..+....... ++|+.|+++++.+.... ..+. .+++|+.|++++ +.+++ +.......++|
T Consensus 116 ~~l~~L~l~~n~i--~~i~~~~~~~~~nL~~L~l~~N~i~~l~-~~~~-~l~~L~~L~l~~-N~l~~--l~~~~~~~~~L 188 (394)
T COG4886 116 TNLTSLDLDNNNI--TDIPPLIGLLKSNLKELDLSDNKIESLP-SPLR-NLPNLKNLDLSF-NDLSD--LPKLLSNLSNL 188 (394)
T ss_pred cceeEEecCCccc--ccCccccccchhhcccccccccchhhhh-hhhh-ccccccccccCC-chhhh--hhhhhhhhhhh
Confidence 4555555554421 1233333444 37888888888766432 2233 779999999998 45553 33333367899
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
+.|+++++. +.+.... ......|+++.+++...+.. ...+. .++++..+.+.+|.+.+. ...++.+++++.|+
T Consensus 189 ~~L~ls~N~-i~~l~~~--~~~~~~L~~l~~~~N~~~~~--~~~~~-~~~~l~~l~l~~n~~~~~-~~~~~~l~~l~~L~ 261 (394)
T COG4886 189 NNLDLSGNK-ISDLPPE--IELLSALEELDLSNNSIIEL--LSSLS-NLKNLSGLELSNNKLEDL-PESIGNLSNLETLD 261 (394)
T ss_pred hheeccCCc-cccCchh--hhhhhhhhhhhhcCCcceec--chhhh-hcccccccccCCceeeec-cchhccccccceec
Confidence 999999875 5533322 12344599999988542222 11122 667888888888877663 24466788899999
Q ss_pred cCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 437 LGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 437 l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+++| .+++.. . .....+++.|++++...
T Consensus 262 ~s~n-~i~~i~--~-~~~~~~l~~L~~s~n~~ 289 (394)
T COG4886 262 LSNN-QISSIS--S-LGSLTNLRELDLSGNSL 289 (394)
T ss_pred cccc-cccccc--c-ccccCccCEEeccCccc
Confidence 9999 888533 3 44788999999988654
No 60
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=97.05 E-value=0.00021 Score=67.16 Aligned_cols=111 Identities=27% Similarity=0.417 Sum_probs=59.7
Q ss_pred CCCCCeEecCCCCCCChHHHHH---HHHhCCC-CcEEecCCCCCCCHHHHHHHHhcC----CCCCEEEccCCCCCCHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSF---VVQSHKE-LRKLDITCCRKITYASINSITKTC----TSLTSLRMECCKLVSWEAF 398 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~ 398 (473)
..++++|.+..| .++...... .+...+. +..+++..+. +.+.++..+...+ +.++.++++.|. +++.+.
T Consensus 203 ~~~le~L~L~~~-~~t~~~c~~l~~~l~~~~~~~~el~l~~n~-l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~ 279 (478)
T KOG4308|consen 203 LSSLETLKLSRC-GVTSSSCALLDEVLASGESLLRELDLASNK-LGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGV 279 (478)
T ss_pred cccHHHHhhhhc-CcChHHHHHHHHHHhccchhhHHHHHHhcC-cchHHHHHHHHHhcccchhhhhhhhhcCC-ccccch
Confidence 345666777664 333332222 2333333 5556666543 6666555544433 345777777755 444433
Q ss_pred HHH---HhcCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCC
Q 012001 399 VLI---GQQCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 399 ~~~---~~~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
..+ ...++.++.+.++.|.+++.+...+. ....+..+.+.++
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~ 328 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGT 328 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhcccc
Confidence 332 22566777777777777776655543 2445556666555
No 61
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.94 E-value=0.0012 Score=33.84 Aligned_cols=24 Identities=50% Similarity=0.920 Sum_probs=18.7
Q ss_pred CCCCCeeecCCCCCcchHHHHHHH
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
|++|++|++++|+++++.++..+.
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 577888888888888888877665
No 62
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.92 E-value=0.00017 Score=59.84 Aligned_cols=63 Identities=33% Similarity=0.389 Sum_probs=42.3
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCC-CcccccccCcccCeeeccCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCH 237 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~ 237 (473)
+|+|+.|.++.+..-...++..++..+|+|+++++++|++.+ ..+..+..+++|..|.+..|.
T Consensus 64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~ 127 (260)
T KOG2739|consen 64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCS 127 (260)
T ss_pred cchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCC
Confidence 678888888776434445566666677888888888886653 334444566677777776654
No 63
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=96.90 E-value=0.00099 Score=39.37 Aligned_cols=35 Identities=31% Similarity=0.247 Sum_probs=28.5
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|++|++++| ++++ ++....++++|++|++++|+
T Consensus 1 ~~L~~L~l~~N-~i~~--l~~~l~~l~~L~~L~l~~N~ 35 (44)
T PF12799_consen 1 KNLEELDLSNN-QITD--LPPELSNLPNLETLNLSNNP 35 (44)
T ss_dssp TT-SEEEETSS-S-SS--HGGHGTTCTTSSEEEETSSC
T ss_pred CcceEEEccCC-CCcc--cCchHhCCCCCCEEEecCCC
Confidence 58999999999 9995 55546699999999999995
No 64
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.00025 Score=59.35 Aligned_cols=101 Identities=23% Similarity=0.297 Sum_probs=75.2
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L 432 (473)
.+.+.|+..+|. ++|..+. ...|.|+.|.++- +.|+. +..+. .|++|++|.|..|.|.+. .+.++.++|+|
T Consensus 19 ~~vkKLNcwg~~-L~DIsic---~kMp~lEVLsLSv-NkIss--L~pl~-rCtrLkElYLRkN~I~sldEL~YLknlpsL 90 (388)
T KOG2123|consen 19 ENVKKLNCWGCG-LDDISIC---EKMPLLEVLSLSV-NKISS--LAPLQ-RCTRLKELYLRKNCIESLDELEYLKNLPSL 90 (388)
T ss_pred HHhhhhcccCCC-ccHHHHH---HhcccceeEEeec-ccccc--chhHH-HHHHHHHHHHHhcccccHHHHHHHhcCchh
Confidence 467888998886 7766543 5689999999987 43432 33333 899999999999877764 45678899999
Q ss_pred CeeecCCCCCcchHHHH---HHHhcCccCCeee
Q 012001 433 SSLKLGICSNITDEGLK---HVGSTCSMLKELD 462 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~~~---~~~~~~~~L~~L~ 462 (473)
+.|.|..|+.....|-. ...+.+|+|+.||
T Consensus 91 r~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 91 RTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 99999998777654433 3556789998875
No 65
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=96.76 E-value=0.002 Score=33.04 Aligned_cols=24 Identities=21% Similarity=0.500 Sum_probs=13.1
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHH
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
|++|+.|++++|..++|.++..++
T Consensus 1 c~~L~~L~l~~C~~itD~gl~~l~ 24 (26)
T smart00367 1 CPNLRELDLSGCTNITDEGLQALA 24 (26)
T ss_pred CCCCCEeCCCCCCCcCHHHHHHHh
Confidence 345555555555555555555443
No 66
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.71 E-value=0.00041 Score=57.68 Aligned_cols=112 Identities=20% Similarity=0.199 Sum_probs=75.1
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh-hhhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~ 430 (473)
.+..|+.+++.++...+...+ ..+|+|++|.++....--..++..++..+|+|+++++++|.+.+. .+..+..++
T Consensus 41 ~~~~le~ls~~n~gltt~~~~----P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~ 116 (260)
T KOG2739|consen 41 EFVELELLSVINVGLTTLTNF----PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELE 116 (260)
T ss_pred cccchhhhhhhccceeecccC----CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhc
Confidence 345667777666543332222 247899999998753334466777777889999999999988862 223344678
Q ss_pred CCCeeecCCCCCcch-H-HHHHHHhcCccCCeeecCCCCC
Q 012001 431 KLSSLKLGICSNITD-E-GLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~-~-~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+|..|++.+| ..+. . .=..+..-+++|++|+-.++..
T Consensus 117 nL~~Ldl~n~-~~~~l~dyre~vf~ll~~L~~LD~~dv~~ 155 (260)
T KOG2739|consen 117 NLKSLDLFNC-SVTNLDDYREKVFLLLPSLKYLDGCDVDG 155 (260)
T ss_pred chhhhhcccC-CccccccHHHHHHHHhhhhccccccccCC
Confidence 8999999999 4432 1 1224445789999988776543
No 67
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=96.65 E-value=0.00072 Score=63.59 Aligned_cols=208 Identities=21% Similarity=0.258 Sum_probs=131.1
Q ss_pred CcEEecCCCCc--cchHHHHHHHhcCcccceeeccccccCchhHHHh----hhCC-CCCCeeEecCCcCChhHHHHHHh-
Q 012001 254 LKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKC----LHNF-PMLQSIKFEDCPVARSGIKAIGN- 325 (473)
Q Consensus 254 L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~----l~~~-~~L~~L~l~~~~~~~~~~~~l~~- 325 (473)
+..+.+.+|.. .....+.......++|+.|+++++... +..... +... ..++.|++..|.++..+...+..
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~-~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~ 167 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLG-DEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAV 167 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCc-cHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHH
Confidence 44455554441 122345556677889999999887544 333322 2233 56788889889888777665553
Q ss_pred --hCCCCCeEecCCCCCCChHHHHHH---HHh----CCCCcEEecCCCCCCCHHHHHHHHh---cCCC-CCEEEccCCCC
Q 012001 326 --WHGSLKELSLSKCSGVTDEELSFV---VQS----HKELRKLDITCCRKITYASINSITK---TCTS-LTSLRMECCKL 392 (473)
Q Consensus 326 --~~~~L~~L~l~~~~~~~~~~~~~~---~~~----~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~-L~~L~l~~~~~ 392 (473)
..+.++.+++..+. +...+.... ++. ..++++|.+.+|. ++......+.. ..+. +..+++.. +.
T Consensus 168 L~~~~~l~~l~l~~n~-l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~~-n~ 244 (478)
T KOG4308|consen 168 LEKNEHLTELDLSLNG-LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLAS-NK 244 (478)
T ss_pred HhcccchhHHHHHhcc-cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHHh-cC
Confidence 35678888887743 333333222 222 3578889998886 66555544433 3344 55577766 55
Q ss_pred CCHHHHHHHHhcC----ccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCcchHHHHHHHh---cCccCCee
Q 012001 393 VSWEAFVLIGQQC----QYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS---TCSMLKEL 461 (473)
Q Consensus 393 ~~~~~~~~~~~~~----~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~---~~~~L~~L 461 (473)
+.+.+...+...+ +.++.++++.|.+++.+...+. .++.++.+.++.| .+++.+.....+ ....+..+
T Consensus 245 l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n-~l~~~~~~~~~~~l~~~~~~~~~ 323 (478)
T KOG4308|consen 245 LGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNN-PLTDYGVELLLEALERKTPLLHL 323 (478)
T ss_pred cchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccC-ccccHHHHHHHHHhhhcccchhh
Confidence 7777776665544 4568999999999988777655 5789999999999 777766665554 23344444
Q ss_pred ecCCC
Q 012001 462 DLYRF 466 (473)
Q Consensus 462 ~l~~c 466 (473)
.+.++
T Consensus 324 ~l~~~ 328 (478)
T KOG4308|consen 324 VLGGT 328 (478)
T ss_pred hcccc
Confidence 44433
No 68
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.62 E-value=0.00074 Score=53.81 Aligned_cols=36 Identities=25% Similarity=0.131 Sum_probs=14.8
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
.+++|.+|.+.+|.++.....--..+|+|..|.+.+
T Consensus 62 ~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn 97 (233)
T KOG1644|consen 62 HLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN 97 (233)
T ss_pred CccccceEEecCCcceeeccchhhhccccceEEecC
Confidence 334455555555544432222222244444444444
No 69
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.60 E-value=0.0052 Score=55.91 Aligned_cols=11 Identities=36% Similarity=0.724 Sum_probs=5.5
Q ss_pred CCCEEEccCCC
Q 012001 381 SLTSLRMECCK 391 (473)
Q Consensus 381 ~L~~L~l~~~~ 391 (473)
+|+.|.+++|.
T Consensus 157 SLk~L~Is~c~ 167 (426)
T PRK15386 157 SLKTLSLTGCS 167 (426)
T ss_pred cccEEEecCCC
Confidence 45555555444
No 70
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=96.45 E-value=0.0026 Score=57.02 Aligned_cols=40 Identities=25% Similarity=0.282 Sum_probs=36.1
Q ss_pred CCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 10 NPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 10 ~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.+|+.||+|++..|.. .|+...|+.+.+.||+.||..+..
T Consensus 2 ~~Ws~Lp~dll~~i~~-~l~~~~d~~~~~~vC~sWr~a~~~ 41 (373)
T PLN03215 2 ADWSTLPEELLHMIAG-RLFSNVELKRFRSICRSWRSSVSG 41 (373)
T ss_pred CChhhCCHHHHHHHHh-hCCcHHHHHHHHhhhhhHHHhccc
Confidence 3689999999999999 998789999999999999987543
No 71
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.39 E-value=0.0015 Score=48.58 Aligned_cols=107 Identities=19% Similarity=0.167 Sum_probs=70.0
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
..+..++++.|.-..-............|+..+++++. +.+. -+.+....|.++.|++.+|.+++...+ ++.+|.|+
T Consensus 27 kE~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~neisdvPeE-~Aam~aLr 103 (177)
T KOG4579|consen 27 KELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLANNEISDVPEE-LAAMPALR 103 (177)
T ss_pred HHhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcchhhhhhchHH-HhhhHHhh
Confidence 45677888888744333444444456778888888733 3322 224444667899999999999998755 88999999
Q ss_pred eeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 434 SLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 434 ~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
.|+++.| .+.. ...-+. .+.++-.|+..++
T Consensus 104 ~lNl~~N-~l~~-~p~vi~-~L~~l~~Lds~~n 133 (177)
T KOG4579|consen 104 SLNLRFN-PLNA-EPRVIA-PLIKLDMLDSPEN 133 (177)
T ss_pred hcccccC-cccc-chHHHH-HHHhHHHhcCCCC
Confidence 9999999 5542 122233 3556666555444
No 72
>PRK15386 type III secretion protein GogB; Provisional
Probab=96.39 E-value=0.0079 Score=54.75 Aligned_cols=139 Identities=19% Similarity=0.186 Sum_probs=74.2
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH 353 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 353 (473)
+..+.++++|++++| .+. .++ .-.++|+.|.+.+|.-....+..+ .++|++|.+.+|..+.. -.
T Consensus 48 ~~~~~~l~~L~Is~c-~L~-sLP---~LP~sLtsL~Lsnc~nLtsLP~~L---P~nLe~L~Ls~Cs~L~s--------LP 111 (426)
T PRK15386 48 IEEARASGRLYIKDC-DIE-SLP---VLPNELTEITIENCNNLTTLPGSI---PEGLEKLTVCHCPEISG--------LP 111 (426)
T ss_pred HHHhcCCCEEEeCCC-CCc-ccC---CCCCCCcEEEccCCCCcccCCchh---hhhhhheEccCcccccc--------cc
Confidence 445688888888877 222 122 122368888888765332222222 25788888888755431 12
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (473)
++|+.|.+.+.. ... + ..-.++|+.|.+.++.......+. ..+ ++|+.|++++|...... ..+ -.+|
T Consensus 112 ~sLe~L~L~~n~-~~~--L---~~LPssLk~L~I~~~n~~~~~~lp---~~LPsSLk~L~Is~c~~i~LP-~~L--P~SL 179 (426)
T PRK15386 112 ESVRSLEIKGSA-TDS--I---KNVPNGLTSLSINSYNPENQARID---NLISPSLKTLSLTGCSNIILP-EKL--PESL 179 (426)
T ss_pred cccceEEeCCCC-Ccc--c---ccCcchHhheeccccccccccccc---cccCCcccEEEecCCCcccCc-ccc--cccC
Confidence 467777776422 111 1 112346777777542211111111 012 57888988887543211 111 2478
Q ss_pred CeeecCCC
Q 012001 433 SSLKLGIC 440 (473)
Q Consensus 433 ~~L~l~~~ 440 (473)
+.|.++.+
T Consensus 180 k~L~ls~n 187 (426)
T PRK15386 180 QSITLHIE 187 (426)
T ss_pred cEEEeccc
Confidence 88888765
No 73
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=96.38 E-value=0.0018 Score=48.21 Aligned_cols=125 Identities=18% Similarity=0.145 Sum_probs=79.8
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
.+..++++.|.-..-......+.....|+..+++++. +.+. .+.+...+|.++.|++++ +.+++...+ ++ .+|.|
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~-fk~f-p~kft~kf~t~t~lNl~~-neisdvPeE-~A-am~aL 102 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNG-FKKF-PKKFTIKFPTATTLNLAN-NEISDVPEE-LA-AMPAL 102 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccch-hhhC-CHHHhhccchhhhhhcch-hhhhhchHH-Hh-hhHHh
Confidence 4566777777432212223334445678888888754 3322 234555688999999988 446665544 55 88999
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCe
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (473)
+.|++.+|.+.... ..+..+.++-.|+..++ .........+....+.|..
T Consensus 103 r~lNl~~N~l~~~p-~vi~~L~~l~~Lds~~n-a~~eid~dl~~s~~~al~~ 152 (177)
T KOG4579|consen 103 RSLNLRFNPLNAEP-RVIAPLIKLDMLDSPEN-ARAEIDVDLFYSSLPALIK 152 (177)
T ss_pred hhcccccCccccch-HHHHHHHhHHHhcCCCC-ccccCcHHHhccccHHHHH
Confidence 99999999887654 45566888888888888 5554444444444444443
No 74
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.32 E-value=0.003 Score=50.52 Aligned_cols=105 Identities=18% Similarity=0.216 Sum_probs=69.4
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKL 432 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L 432 (473)
.+...++++++....... ..++++|..|.+++ +.++... +.+..-+|+|+.|.+.+|.+...+ +.-++.||+|
T Consensus 42 d~~d~iDLtdNdl~~l~~----lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L 115 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLDN----LPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKL 115 (233)
T ss_pred cccceecccccchhhccc----CCCccccceEEecC-Ccceeec-cchhhhccccceEEecCcchhhhhhcchhccCCcc
Confidence 355667776654222211 13678999999988 4465422 122334589999999998776644 3456789999
Q ss_pred CeeecCCCCCcchHH-HH-HHHhcCccCCeeecCC
Q 012001 433 SSLKLGICSNITDEG-LK-HVGSTCSMLKELDLYR 465 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~-~~-~~~~~~~~L~~L~l~~ 465 (473)
++|.+-+| .++... .. .+...+|+|+.||..+
T Consensus 116 ~~Ltll~N-pv~~k~~YR~yvl~klp~l~~LDF~k 149 (233)
T KOG1644|consen 116 EYLTLLGN-PVEHKKNYRLYVLYKLPSLRTLDFQK 149 (233)
T ss_pred ceeeecCC-chhcccCceeEEEEecCcceEeehhh
Confidence 99999999 555422 22 2334789999998865
No 75
>KOG2997 consensus F-box protein FBX9 [General function prediction only]
Probab=96.10 E-value=0.0036 Score=53.43 Aligned_cols=42 Identities=24% Similarity=0.429 Sum_probs=33.5
Q ss_pred CCCCcccCcHHHHHHHHhhhc----CChhhhhhhhhhhhhHHHHHhh
Q 012001 8 NSNPFDFLSEEIIFNILDHLN----NDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l----~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....|..||+||+..||. .+ -|.+++.++|+|||.|+-.+..
T Consensus 103 ~~~~~~~LPdEvLm~I~~-~vv~~~~d~rsL~~~s~vCr~F~~~~R~ 148 (366)
T KOG2997|consen 103 ELISISVLPDEVLMRIFR-WVVSSLLDLRSLEQLSLVCRGFYKCARD 148 (366)
T ss_pred hhhhhhhCCHHHHHHHHH-HHHhhhcchhhHHHhHhhHHHHHHHHcC
Confidence 344578999999999998 43 2468999999999999976543
No 76
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.99 E-value=0.0035 Score=31.40 Aligned_cols=20 Identities=40% Similarity=0.730 Sum_probs=8.0
Q ss_pred ccCCeeeecccccChhhhhh
Q 012001 406 QYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~ 425 (473)
++|++|+|++|.+++.++.+
T Consensus 2 ~~L~~L~l~~n~i~~~g~~~ 21 (24)
T PF13516_consen 2 PNLETLDLSNNQITDEGASA 21 (24)
T ss_dssp TT-SEEE-TSSBEHHHHHHH
T ss_pred CCCCEEEccCCcCCHHHHHH
Confidence 34444444444444444443
No 77
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=95.25 E-value=0.013 Score=50.51 Aligned_cols=40 Identities=20% Similarity=0.307 Sum_probs=36.0
Q ss_pred CCCcccCc----HHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 9 SNPFDFLS----EEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 9 ~~~~~~LP----~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.|.+..|| ++|.+.||+ ||. ..+++.+-+|||+|+++...
T Consensus 72 rDFi~~lP~~gl~hi~e~ils-yld-~~sLc~celv~k~W~r~l~d 115 (499)
T KOG0281|consen 72 RDFITALPEQGLDHIAENILS-YLD-ALSLCACELVCKEWKRVLSD 115 (499)
T ss_pred HHHHHhcccccHHHHHHHHHH-hcc-hhhhhHHHHHHHHHHHHhcc
Confidence 46788999 999999999 995 99999999999999998654
No 78
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=95.16 E-value=0.024 Score=28.31 Aligned_cols=23 Identities=35% Similarity=0.463 Sum_probs=17.5
Q ss_pred CCCCCeeecCCCCCcchHHHHHHH
Q 012001 429 CSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
+++|+.|+|++| .+++.++..+.
T Consensus 1 ~~~L~~L~l~~n-~i~~~g~~~l~ 23 (24)
T PF13516_consen 1 NPNLETLDLSNN-QITDEGASALA 23 (24)
T ss_dssp -TT-SEEE-TSS-BEHHHHHHHHH
T ss_pred CCCCCEEEccCC-cCCHHHHHHhC
Confidence 578999999999 89999888765
No 79
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=94.15 E-value=0.0066 Score=57.07 Aligned_cols=55 Identities=22% Similarity=0.141 Sum_probs=25.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
+++|++|+++++......++. .++.|+.|++.+|.+. .+..+..+++|+.+++++
T Consensus 117 ~~~L~~L~ls~N~I~~i~~l~----~l~~L~~L~l~~N~i~--~~~~~~~l~~L~~l~l~~ 171 (414)
T KOG0531|consen 117 LVNLQVLDLSFNKITKLEGLS----TLTLLKELNLSGNLIS--DISGLESLKSLKLLDLSY 171 (414)
T ss_pred hhcchheeccccccccccchh----hccchhhheeccCcch--hccCCccchhhhcccCCc
Confidence 555555555554322222222 2334555666655443 233333455555555555
No 80
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=93.81 E-value=0.029 Score=52.81 Aligned_cols=106 Identities=24% Similarity=0.262 Sum_probs=68.8
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+.+|+.|++.+ +.+.. +...+..+++|+.|+++++. +++. ..+ ..++.|+.|+++++.-.+-.++. .+
T Consensus 93 ~~~~l~~l~l~~-n~i~~--i~~~l~~~~~L~~L~ls~N~-I~~i--~~l-~~l~~L~~L~l~~N~i~~~~~~~----~l 161 (414)
T KOG0531|consen 93 KLKSLEALDLYD-NKIEK--IENLLSSLVNLQVLDLSFNK-ITKL--EGL-STLTLLKELNLSGNLISDISGLE----SL 161 (414)
T ss_pred cccceeeeeccc-cchhh--cccchhhhhcchheeccccc-cccc--cch-hhccchhhheeccCcchhccCCc----cc
Confidence 567888888887 45442 23324567889999998865 4422 112 23566888888885422222222 36
Q ss_pred ccCCeeeecccccChhhh-hhhhcCCCCCeeecCCCCCcc
Q 012001 406 QYLEELDITENEVNDEGL-KSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~~~~l~ 444 (473)
++|+.+++++|.+++... . +..+.+++.+.+.+| .+.
T Consensus 162 ~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n-~i~ 199 (414)
T KOG0531|consen 162 KSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGN-SIR 199 (414)
T ss_pred hhhhcccCCcchhhhhhhhh-hhhccchHHHhccCC-chh
Confidence 788888888888777653 2 456888888888888 444
No 81
>PF13013 F-box-like_2: F-box-like domain
Probab=92.94 E-value=0.15 Score=36.87 Aligned_cols=30 Identities=30% Similarity=0.248 Sum_probs=26.6
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCR 42 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~ 42 (473)
.+.+||.||+..||. +.. ..+...+...|+
T Consensus 21 tl~DLP~ELl~~I~~-~C~-~~~l~~l~~~~~ 50 (109)
T PF13013_consen 21 TLLDLPWELLQLIFD-YCN-DPILLALSRTCR 50 (109)
T ss_pred chhhChHHHHHHHHh-hcC-cHHHHHHHHHHH
Confidence 378899999999999 886 888888888888
No 82
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=92.44 E-value=0.11 Score=26.99 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=12.1
Q ss_pred ccCCeeeecccccChhhhhhhh
Q 012001 406 QYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
++|++|+|++|.+++.+...++
T Consensus 2 ~~L~~LdL~~N~i~~~G~~~L~ 23 (28)
T smart00368 2 PSLRELDLSNNKLGDEGARALA 23 (28)
T ss_pred CccCEEECCCCCCCHHHHHHHH
Confidence 3455566666666555555443
No 83
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=91.80 E-value=0.24 Score=25.76 Aligned_cols=25 Identities=24% Similarity=0.381 Sum_probs=21.1
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTC 455 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~ 455 (473)
++|++|+|++| .+++.|...+.+.+
T Consensus 2 ~~L~~LdL~~N-~i~~~G~~~L~~~L 26 (28)
T smart00368 2 PSLRELDLSNN-KLGDEGARALAEAL 26 (28)
T ss_pred CccCEEECCCC-CCCHHHHHHHHHHh
Confidence 68999999999 99999988776543
No 84
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=91.59 E-value=0.0083 Score=55.86 Aligned_cols=32 Identities=22% Similarity=0.218 Sum_probs=17.1
Q ss_pred CCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|..||++.|+++... ..+.++..|++|-|.+|
T Consensus 213 Li~lDfScNkis~iP-v~fr~m~~Lq~l~LenN 244 (722)
T KOG0532|consen 213 LIRLDFSCNKISYLP-VDFRKMRHLQVLQLENN 244 (722)
T ss_pred eeeeecccCceeecc-hhhhhhhhheeeeeccC
Confidence 555555555555443 23444555555555555
No 85
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=90.76 E-value=0.51 Score=44.36 Aligned_cols=39 Identities=15% Similarity=0.284 Sum_probs=22.1
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (473)
..|.+..++++++....-+.+..++...|+|+.|+|++.
T Consensus 216 n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 216 NFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred CCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 446666666666554444445555555666666666654
No 86
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=90.14 E-value=0.23 Score=22.30 Aligned_cols=10 Identities=40% Similarity=0.747 Sum_probs=3.5
Q ss_pred CCeeeecccc
Q 012001 408 LEELDITENE 417 (473)
Q Consensus 408 L~~L~l~~~~ 417 (473)
|+.|++++|.
T Consensus 3 L~~L~l~~n~ 12 (17)
T PF13504_consen 3 LRTLDLSNNR 12 (17)
T ss_dssp -SEEEETSS-
T ss_pred cCEEECCCCC
Confidence 4444444443
No 87
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=89.77 E-value=0.011 Score=55.09 Aligned_cols=87 Identities=16% Similarity=0.077 Sum_probs=59.5
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
..+.|..|+.+.|+..+ +..-...+..|+.|.+..|.+.+.. ..+. .-.|..|+++.| +++. ++.-+..+..
T Consensus 164 ~~~tl~~ld~s~nei~s---lpsql~~l~slr~l~vrRn~l~~lp-~El~-~LpLi~lDfScN-kis~--iPv~fr~m~~ 235 (722)
T KOG0532|consen 164 LLPTLAHLDVSKNEIQS---LPSQLGYLTSLRDLNVRRNHLEDLP-EELC-SLPLIRLDFSCN-KISY--LPVDFRKMRH 235 (722)
T ss_pred cchhHHHhhhhhhhhhh---chHHhhhHHHHHHHHHhhhhhhhCC-HHHh-CCceeeeecccC-ceee--cchhhhhhhh
Confidence 45666667776655322 1111125677888888888776654 3454 557899999999 8884 5655558999
Q ss_pred CCeeecCCCCCcccC
Q 012001 458 LKELDLYRFVTFHLS 472 (473)
Q Consensus 458 L~~L~l~~c~~l~~~ 472 (473)
|++|.+.++|-=+..
T Consensus 236 Lq~l~LenNPLqSPP 250 (722)
T KOG0532|consen 236 LQVLQLENNPLQSPP 250 (722)
T ss_pred heeeeeccCCCCCCh
Confidence 999999999865543
No 88
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=87.90 E-value=0.31 Score=23.58 Aligned_cols=13 Identities=38% Similarity=0.583 Sum_probs=8.1
Q ss_pred cCCeeeecccccC
Q 012001 407 YLEELDITENEVN 419 (473)
Q Consensus 407 ~L~~L~l~~~~~~ 419 (473)
+|+.|++++|.++
T Consensus 1 ~L~~Ldls~n~l~ 13 (22)
T PF00560_consen 1 NLEYLDLSGNNLT 13 (22)
T ss_dssp TESEEEETSSEES
T ss_pred CccEEECCCCcCE
Confidence 3566666666665
No 89
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=87.23 E-value=0.24 Score=47.80 Aligned_cols=44 Identities=16% Similarity=0.268 Sum_probs=38.9
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
....+.+..||.|+...||. ||+ .+++..+++||+.|+.++...
T Consensus 102 ~~~~dfi~~lp~el~~~il~-~Ld-~~~l~~~~~v~~~w~~~~~~~ 145 (537)
T KOG0274|consen 102 LGQRDFLSLLPSELSLHILS-FLD-GRDLLAVRQVCRNWNKLLDDD 145 (537)
T ss_pred ccccchhhcccchhcccccc-cCC-HHHhhhhhhhcchhhhhhhcc
Confidence 34567899999999999999 997 999999999999999987655
No 90
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=85.27 E-value=0.072 Score=40.61 Aligned_cols=11 Identities=36% Similarity=0.682 Sum_probs=3.7
Q ss_pred cCCCCcEEEcC
Q 012001 123 NCRFLTEIDLS 133 (473)
Q Consensus 123 ~~~~L~~L~l~ 133 (473)
.|.+|+.+.+.
T Consensus 10 ~~~~l~~i~~~ 20 (129)
T PF13306_consen 10 NCSNLESITFP 20 (129)
T ss_dssp T-TT--EEEET
T ss_pred CCCCCCEEEEC
Confidence 34444544443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=85.12 E-value=1.4 Score=41.57 Aligned_cols=41 Identities=32% Similarity=0.320 Sum_probs=23.2
Q ss_pred cccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCC
Q 012001 95 SSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG 135 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 135 (473)
....+.+..++++.++......+..+....|+|+.|+|+++
T Consensus 214 ~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N 254 (585)
T KOG3763|consen 214 EENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHN 254 (585)
T ss_pred hcCCcceeeeecccchhhchhhhhHHHHhcchhheeecccc
Confidence 34455555566655554455555555555666666666654
No 92
>PF09372 PRANC: PRANC domain; InterPro: IPR018272 This presumed domain is found at the C terminus of a variety of Pox virus proteins. The PRANC (Pox proteins Repeats of ANkyrin, C-terminal) domain is also found on its own in some proteins []. The function of this domain is unknown, but it appears to be related to the F-box domain and may play a similar role.
Probab=83.12 E-value=1.1 Score=32.06 Aligned_cols=27 Identities=26% Similarity=0.356 Sum_probs=23.1
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSF 37 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~ 37 (473)
.+.|..||.||...|++ +|+ ..|+..+
T Consensus 69 ~~~w~~LP~EIk~~Il~-~L~-~~dL~~l 95 (97)
T PF09372_consen 69 NNYWNILPIEIKYKILE-YLS-NKDLKKL 95 (97)
T ss_pred CCchhhCCHHHHHHHHH-cCC-HHHHHHH
Confidence 36899999999999999 997 8887653
No 93
>KOG3926 consensus F-box proteins [Amino acid transport and metabolism]
Probab=79.77 E-value=3.5 Score=34.94 Aligned_cols=41 Identities=17% Similarity=0.118 Sum_probs=35.1
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHh
Q 012001 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIES 49 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~ 49 (473)
..-.+.+||.|++..|+. .++|.+|+..+++|-...+.+..
T Consensus 198 ~~ltl~dLP~e~vl~Il~-rlsDh~dL~s~aqa~etl~~l~~ 238 (332)
T KOG3926|consen 198 AGLTLHDLPLECVLNILL-RLSDHRDLESLAQAWETLAKLSE 238 (332)
T ss_pred CCCCcccchHHHHHHHHH-HccCcchHHHHHHhhHHHHHHHH
Confidence 344789999999999999 99999999999999877666554
No 94
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=77.23 E-value=1.9 Score=21.68 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=8.1
Q ss_pred ccCCeeeecccccChh
Q 012001 406 QYLEELDITENEVNDE 421 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~ 421 (473)
++|+.|++++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00369 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555544443
No 95
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=77.23 E-value=1.9 Score=21.68 Aligned_cols=16 Identities=31% Similarity=0.547 Sum_probs=8.1
Q ss_pred ccCCeeeecccccChh
Q 012001 406 QYLEELDITENEVNDE 421 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~ 421 (473)
++|+.|++++|.++..
T Consensus 2 ~~L~~L~L~~N~l~~l 17 (26)
T smart00370 2 PNLRELDLSNNQLSSL 17 (26)
T ss_pred CCCCEEECCCCcCCcC
Confidence 3455555555544443
No 96
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=76.52 E-value=0.95 Score=34.29 Aligned_cols=105 Identities=22% Similarity=0.370 Sum_probs=50.5
Q ss_pred HHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 350 VQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 350 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
+..+++|+.+.+... +....-.. ...+++|+.+.+.. . +..-+-..+. ++++|+.+.+.+ .+...+...+..+
T Consensus 8 F~~~~~l~~i~~~~~--~~~I~~~~-F~~~~~l~~i~~~~-~-~~~i~~~~F~-~~~~l~~i~~~~-~~~~i~~~~F~~~ 80 (129)
T PF13306_consen 8 FYNCSNLESITFPNT--IKKIGENA-FSNCTSLKSINFPN-N-LTSIGDNAFS-NCKSLESITFPN-NLKSIGDNAFSNC 80 (129)
T ss_dssp TTT-TT--EEEETST----EE-TTT-TTT-TT-SEEEESS-T-TSCE-TTTTT-T-TT-EEEEETS-TT-EE-TTTTTT-
T ss_pred HhCCCCCCEEEECCC--eeEeChhh-cccccccccccccc-c-ccccceeeee-cccccccccccc-ccccccccccccc
Confidence 446778999988632 22221111 14678899999875 2 3322222232 777899999976 4443343456678
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
++|+.+.+..+ ++..+...+ ..+ +|+.+.+.+
T Consensus 81 ~~l~~i~~~~~--~~~i~~~~f-~~~-~l~~i~~~~ 112 (129)
T PF13306_consen 81 TNLKNIDIPSN--ITEIGSSSF-SNC-NLKEINIPS 112 (129)
T ss_dssp TTECEEEETTT---BEEHTTTT-TT--T--EEE-TT
T ss_pred ccccccccCcc--ccEEchhhh-cCC-CceEEEECC
Confidence 99999999653 332222223 355 777777653
No 97
>PF07723 LRR_2: Leucine Rich Repeat; InterPro: IPR013101 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This entry includes some LRRs that fail to be detected by IPR001611 from INTERPRO [, ].
Probab=65.51 E-value=4.8 Score=20.45 Aligned_cols=8 Identities=50% Similarity=0.646 Sum_probs=3.1
Q ss_pred CCeEecCC
Q 012001 330 LKELSLSK 337 (473)
Q Consensus 330 L~~L~l~~ 337 (473)
|++|.+..
T Consensus 2 LKtL~L~~ 9 (26)
T PF07723_consen 2 LKTLHLDS 9 (26)
T ss_pred CeEEEeeE
Confidence 33444433
No 98
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=59.71 E-value=7.4 Score=19.80 Aligned_cols=12 Identities=50% Similarity=0.905 Sum_probs=6.1
Q ss_pred cCCeeeeccccc
Q 012001 407 YLEELDITENEV 418 (473)
Q Consensus 407 ~L~~L~l~~~~~ 418 (473)
+|+.|++++|.|
T Consensus 3 ~L~~L~L~~NkI 14 (26)
T smart00365 3 NLEELDLSQNKI 14 (26)
T ss_pred ccCEEECCCCcc
Confidence 455555555544
No 99
>KOG2502 consensus Tub family proteins [General function prediction only]
Probab=51.40 E-value=14 Score=33.00 Aligned_cols=41 Identities=15% Similarity=0.244 Sum_probs=32.4
Q ss_pred CCcccCcHHHHHHHHhhhcCC-------hhhhhhhhhhhhhHHHHHhhh
Q 012001 10 NPFDFLSEEIIFNILDHLNND-------PFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 10 ~~~~~LP~eil~~If~~~l~~-------~~d~~~~~~vc~~w~~~~~~~ 51 (473)
..|.+||.|.+..|.. .... -+..+.++-||+.|++.....
T Consensus 43 ~~~~~l~~~~L~d~~~-r~eese~~wp~r~~vvs~~~~~~~~r~~~~~~ 90 (355)
T KOG2502|consen 43 SLWAALPPELLSDVLK-RDEESEDTWPSRRNVVSCAGVCDKWREISKEI 90 (355)
T ss_pred chhhcCCHhHHHHHhh-hccccccccccccccccccchhhhhhhhcccc
Confidence 4788999999999998 5542 346788999999999875443
No 100
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=49.88 E-value=47 Score=29.75 Aligned_cols=87 Identities=16% Similarity=0.231 Sum_probs=52.9
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhc---CCCCCEEEccCCCCCCH---HHHHHHHhcCccCCeeeecccccChhhhhh
Q 012001 352 SHKELRKLDITCCRKITYASINSITKT---CTSLTSLRMECCKLVSW---EAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (473)
.-|.++..++.+...+...-+..+... ....+...+.+ ...++ .++..+...++.|++|++.+|.|+..++.+
T Consensus 196 nd~~l~evnlnn~~~ip~e~lk~~~eal~~nt~vk~Fsla~-tr~~d~vA~a~a~ml~~n~sl~slnvesnFItg~gi~a 274 (353)
T KOG3735|consen 196 NDTGLTEVNLNNIRRIPIETLKQFSEALKNNTHVKKFSLAN-TRSSDPVAFAIAEMLKENKSLTSLNVESNFITGLGIMA 274 (353)
T ss_pred CCCCceeeeccccccCCHHHHHHHHHHHhcCchhhhhhhhc-ccCCchhHHHHHHHHhhcchhhheeccccccccHHHHH
Confidence 348899998888777776655554433 33444444443 22222 334444556788888888888888888766
Q ss_pred hhc----CCCCCeeecCC
Q 012001 426 ISR----CSKLSSLKLGI 439 (473)
Q Consensus 426 l~~----~~~L~~L~l~~ 439 (473)
+.. -.+|..+.+.+
T Consensus 275 ~~~al~~n~tl~el~~dn 292 (353)
T KOG3735|consen 275 LLRALQSNKSLTELKNDN 292 (353)
T ss_pred HHHHHhccchhhHhhhhh
Confidence 542 24555555443
No 101
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=41.00 E-value=16 Score=18.64 Aligned_cols=13 Identities=31% Similarity=0.677 Sum_probs=7.1
Q ss_pred cCCeeeecccccC
Q 012001 407 YLEELDITENEVN 419 (473)
Q Consensus 407 ~L~~L~l~~~~~~ 419 (473)
+|+.|++++|+++
T Consensus 3 ~L~~L~vs~N~Lt 15 (26)
T smart00364 3 SLKELNVSNNQLT 15 (26)
T ss_pred ccceeecCCCccc
Confidence 4555555555544
No 102
>KOG4242 consensus Predicted myosin-I-binding protein [Cell motility]
Probab=35.99 E-value=78 Score=30.00 Aligned_cols=74 Identities=22% Similarity=0.222 Sum_probs=45.2
Q ss_pred CCCCCEEEccCCCCCCH--HHHHHHHhcCccCCeeeecccccChhhhhhhhc----CCCCCeeecCCCCCcchHHHHHHH
Q 012001 379 CTSLTSLRMECCKLVSW--EAFVLIGQQCQYLEELDITENEVNDEGLKSISR----CSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~----~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
.--+..+.++.|..-.+ ..+..+. .-+.+.+|++++|...+.+-.-+.+ -..++.+..+.| ..++.++....
T Consensus 412 ~g~l~el~ls~~~lka~l~s~in~l~-stqtl~kldisgn~mgd~gap~lpkalq~n~rlr~ipds~n-~p~~~gl~p~~ 489 (553)
T KOG4242|consen 412 HGVLAELSLSPGPLKAGLESAINKLL-STQTLAKLDISGNGMGDGGAPPLPKALQSNCRLRPIPDSLN-LPEDPGLGPRN 489 (553)
T ss_pred cccccCcccCCCcccccHHHHHHhhc-cCcccccccccCCCcccCCCCcCccccCCCCccCCCCCCCC-Cccccccchhh
Confidence 34466666766553222 1122222 5577999999999888876554442 346778877777 77766666555
Q ss_pred hc
Q 012001 453 ST 454 (473)
Q Consensus 453 ~~ 454 (473)
..
T Consensus 490 ~~ 491 (553)
T KOG4242|consen 490 EE 491 (553)
T ss_pred hh
Confidence 43
No 103
>KOG3735 consensus Tropomodulin and leiomodulin [Cytoskeleton]
Probab=31.11 E-value=1.2e+02 Score=27.33 Aligned_cols=30 Identities=20% Similarity=0.296 Sum_probs=17.1
Q ss_pred hHHHHHHHhcCCCCcEEecCCCCccchHHH
Q 012001 241 DDGLASVEYSCKSLKALNLSKCQNISHVGL 270 (473)
Q Consensus 241 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~ 270 (473)
...+..+...-+.++..++.....+....+
T Consensus 187 e~~leri~~nd~~l~evnlnn~~~ip~e~l 216 (353)
T KOG3735|consen 187 ESSLERIKENDTGLTEVNLNNIRRIPIETL 216 (353)
T ss_pred HHHHHHHhcCCCCceeeeccccccCCHHHH
Confidence 334455555556777777776665554433
No 104
>PF03382 DUF285: Mycoplasma protein of unknown function, DUF285; InterPro: IPR005046 This is a family proteins of unknown function. Many contain a tandem peptide repeat sequence of 25 or 26 residues, found in predicted surface proteins (often lipoproteins) from Listeria monocytogenes, Listeria innocua, Enterococcus faecalis (Streptococcus faecalis), Lactobacillus plantarum, Mycoplasma mycoides, Helicobacter hepaticus, and other species.
Probab=26.30 E-value=51 Score=24.58 Aligned_cols=10 Identities=30% Similarity=0.813 Sum_probs=4.5
Q ss_pred cCccCCeeeec
Q 012001 404 QCQYLEELDIT 414 (473)
Q Consensus 404 ~~~~L~~L~l~ 414 (473)
+++.|.. +++
T Consensus 59 ~~~~l~~-dls 68 (120)
T PF03382_consen 59 GCSSLNQ-DLS 68 (120)
T ss_pred hhhhcCC-Ccc
Confidence 4444444 443
No 105
>KOG1665 consensus AFH1-interacting protein FIP2, contains BTB/POZ domain and pentapeptide repeats [General function prediction only]
Probab=25.34 E-value=84 Score=26.19 Aligned_cols=9 Identities=22% Similarity=0.361 Sum_probs=3.6
Q ss_pred CCCCeEecC
Q 012001 328 GSLKELSLS 336 (473)
Q Consensus 328 ~~L~~L~l~ 336 (473)
.+|+.-+++
T Consensus 171 a~lerADl~ 179 (302)
T KOG1665|consen 171 AKLERADLE 179 (302)
T ss_pred hhhcccccc
Confidence 344444443
Done!