Query 012001
Match_columns 473
No_of_seqs 361 out of 3514
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 19:39:11 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012001.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012001hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2p1m_B Transport inhibitor res 100.0 2.7E-44 9.2E-49 353.4 34.1 447 9-467 3-517 (594)
2 3ogk_B Coronatine-insensitive 100.0 2.9E-43 9.9E-48 345.7 33.2 460 1-471 1-527 (592)
3 2p1m_B Transport inhibitor res 100.0 4.1E-33 1.4E-37 273.8 35.0 391 63-466 97-541 (594)
4 3ogk_B Coronatine-insensitive 100.0 6.8E-32 2.3E-36 265.0 34.3 394 62-466 103-548 (592)
5 1z7x_W Ribonuclease inhibitor; 100.0 4.5E-29 1.6E-33 237.2 30.3 383 71-467 3-438 (461)
6 1z7x_W Ribonuclease inhibitor; 100.0 1.6E-28 5.5E-33 233.4 32.9 388 61-461 18-460 (461)
7 2ast_B S-phase kinase-associat 100.0 4.7E-29 1.6E-33 226.7 19.6 296 9-342 6-306 (336)
8 3t6q_A CD180 antigen; protein- 99.9 7.3E-28 2.5E-32 236.8 -0.1 256 200-467 276-558 (606)
9 3rgz_A Protein brassinosteroid 99.9 6.8E-28 2.3E-32 242.2 -2.9 255 201-467 393-715 (768)
10 3t6q_A CD180 antigen; protein- 99.9 2.1E-27 7.1E-32 233.6 0.3 252 203-467 255-534 (606)
11 3rgz_A Protein brassinosteroid 99.9 5E-28 1.7E-32 243.1 -4.2 254 201-467 293-549 (768)
12 4fmz_A Internalin; leucine ric 99.9 2.6E-24 8.8E-29 196.3 18.2 237 200-467 108-344 (347)
13 2z81_A CD282 antigen, TOLL-lik 99.9 5.4E-26 1.8E-30 220.9 6.5 182 71-263 26-207 (549)
14 4fmz_A Internalin; leucine ric 99.9 1.4E-23 4.8E-28 191.4 20.2 217 200-444 130-346 (347)
15 1o6v_A Internalin A; bacterial 99.9 1E-23 3.6E-28 199.8 19.4 341 71-467 46-386 (466)
16 3vq2_A TLR4, TOLL-like recepto 99.9 9.7E-27 3.3E-31 228.8 -1.9 208 251-468 349-557 (606)
17 3v47_A TOLL-like receptor 5B a 99.9 6.3E-26 2.2E-30 215.1 -0.8 355 71-444 30-408 (455)
18 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-24 4.2E-29 209.7 8.1 366 71-467 21-479 (520)
19 1o6v_A Internalin A; bacterial 99.9 1.4E-22 4.7E-27 192.1 19.3 326 67-445 64-389 (466)
20 2z63_A TOLL-like receptor 4, v 99.9 1.9E-26 6.6E-31 225.2 -8.2 183 277-467 346-529 (570)
21 3vq2_A TLR4, TOLL-like recepto 99.9 1.1E-25 3.9E-30 221.2 -3.3 112 351-467 421-532 (606)
22 2ast_B S-phase kinase-associat 99.9 9.7E-22 3.3E-26 178.5 22.5 247 202-459 47-299 (336)
23 1ziw_A TOLL-like receptor 3; i 99.9 1.7E-24 6E-29 215.6 4.4 308 66-390 44-363 (680)
24 3v47_A TOLL-like receptor 5B a 99.9 2.6E-24 8.9E-29 204.0 5.4 357 97-467 28-406 (455)
25 1ziw_A TOLL-like receptor 3; i 99.9 1E-24 3.5E-29 217.3 1.9 330 126-468 249-621 (680)
26 4eco_A Uncharacterized protein 99.9 4.6E-25 1.6E-29 216.6 -2.6 349 95-469 202-600 (636)
27 4ecn_A Leucine-rich repeat pro 99.9 3.1E-24 1.1E-28 214.2 1.6 348 95-469 444-840 (876)
28 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 7E-24 2.4E-28 206.0 2.6 367 71-467 52-508 (562)
29 2z81_A CD282 antigen, TOLL-lik 99.9 1.3E-22 4.4E-27 197.1 11.4 328 97-440 24-420 (549)
30 4eco_A Uncharacterized protein 99.9 1.3E-24 4.5E-29 213.3 -4.5 328 120-468 201-578 (636)
31 3j0a_A TOLL-like receptor 5; m 99.9 8E-25 2.7E-29 222.2 -8.4 162 66-236 43-214 (844)
32 4ecn_A Leucine-rich repeat pro 99.9 3.4E-23 1.2E-27 206.7 2.9 327 121-468 444-818 (876)
33 2ca6_A RAN GTPase-activating p 99.9 5.8E-20 2E-24 169.8 24.1 262 198-465 28-339 (386)
34 3j0a_A TOLL-like receptor 5; m 99.9 2.8E-24 9.7E-29 218.1 -6.2 374 70-467 23-462 (844)
35 2z7x_B TOLL-like receptor 1, v 99.9 4E-22 1.4E-26 192.1 8.8 227 201-444 246-481 (520)
36 2ca6_A RAN GTPase-activating p 99.9 2.4E-20 8.2E-25 172.4 20.3 260 174-440 30-340 (386)
37 2id5_A Lingo-1, leucine rich r 99.9 3.8E-23 1.3E-27 197.0 -0.5 303 124-444 31-333 (477)
38 2z63_A TOLL-like receptor 4, v 99.9 1.7E-24 5.7E-29 211.5 -10.1 156 71-236 28-187 (570)
39 3o6n_A APL1; leucine-rich repe 99.8 1.4E-22 4.6E-27 187.8 3.0 327 96-460 42-368 (390)
40 3o6n_A APL1; leucine-rich repe 99.8 2.4E-22 8.1E-27 186.2 4.1 265 123-422 91-355 (390)
41 2id5_A Lingo-1, leucine rich r 99.8 5.8E-23 2E-27 195.7 -0.9 306 96-420 29-334 (477)
42 3oja_B Anopheles plasmodium-re 99.8 7.3E-22 2.5E-26 192.8 3.8 323 97-457 49-371 (597)
43 3bz5_A Internalin-J, INLJ; leu 99.8 1.4E-20 4.8E-25 176.8 9.2 306 67-445 38-353 (457)
44 3bz5_A Internalin-J, INLJ; leu 99.8 2.9E-20 9.9E-25 174.6 10.2 304 96-467 39-350 (457)
45 3oja_B Anopheles plasmodium-re 99.8 3E-21 1E-25 188.5 3.5 56 278-337 232-287 (597)
46 3a79_B TLR6, VLRB.59, TOLL-lik 99.8 1.6E-20 5.3E-25 182.5 7.2 349 64-444 69-510 (562)
47 4g8a_A TOLL-like receptor 4; l 99.8 2.4E-21 8.2E-26 191.9 -3.3 135 326-467 443-578 (635)
48 3goz_A Leucine-rich repeat-con 99.8 9.9E-18 3.4E-22 153.2 16.7 246 194-446 14-299 (362)
49 1ogq_A PGIP-2, polygalacturona 99.7 8.2E-21 2.8E-25 169.7 -6.4 252 203-470 51-305 (313)
50 2z80_A TOLL-like receptor 2, v 99.7 8.3E-19 2.8E-23 160.0 5.1 236 200-444 74-314 (353)
51 3goz_A Leucine-rich repeat-con 99.7 7.5E-17 2.6E-21 147.4 17.5 254 168-426 14-304 (362)
52 3o53_A Protein LRIM1, AGAP0063 99.7 3.1E-19 1.1E-23 160.0 -2.6 246 169-466 27-272 (317)
53 1xku_A Decorin; proteoglycan, 99.7 7.5E-18 2.6E-22 152.2 4.9 272 175-467 51-330 (330)
54 4g8a_A TOLL-like receptor 4; l 99.7 1.2E-18 4E-23 172.6 -1.1 138 298-441 440-578 (635)
55 1xku_A Decorin; proteoglycan, 99.7 1.7E-18 5.7E-23 156.5 -0.5 36 405-440 292-329 (330)
56 2z66_A Variable lymphocyte rec 99.7 9.8E-19 3.4E-23 156.2 -2.4 231 202-444 28-261 (306)
57 3zyj_A Leucine-rich repeat-con 99.7 5E-18 1.7E-22 159.6 1.5 226 202-440 64-289 (440)
58 1ogq_A PGIP-2, polygalacturona 99.7 3E-19 1E-23 159.6 -6.8 230 200-444 74-305 (313)
59 2z80_A TOLL-like receptor 2, v 99.7 1.1E-17 3.6E-22 152.6 3.0 252 202-468 52-313 (353)
60 3zyi_A Leucine-rich repeat-con 99.7 8.9E-18 3E-22 158.5 2.2 226 202-440 75-300 (452)
61 2z66_A Variable lymphocyte rec 99.7 1.4E-18 4.7E-23 155.3 -3.6 249 205-467 10-259 (306)
62 2ft3_A Biglycan; proteoglycan, 99.7 7.8E-19 2.7E-23 158.7 -5.4 268 125-440 54-330 (332)
63 1jl5_A Outer protein YOPM; leu 99.6 3.2E-16 1.1E-20 147.0 8.4 117 303-444 277-409 (454)
64 1wwl_A Monocyte differentiatio 99.6 5E-18 1.7E-22 151.7 -3.7 107 352-467 199-307 (312)
65 1jl5_A Outer protein YOPM; leu 99.6 1.2E-16 4E-21 150.0 5.4 322 71-468 71-408 (454)
66 4fcg_A Uncharacterized protein 99.6 1.5E-17 5.2E-22 149.4 -0.6 232 175-440 80-311 (328)
67 2ft3_A Biglycan; proteoglycan, 99.6 1.1E-17 3.7E-22 151.2 -1.9 272 175-468 53-332 (332)
68 3oja_A Leucine-rich immune mol 99.6 3E-17 1E-21 155.6 0.2 236 203-464 35-270 (487)
69 1ozn_A Reticulon 4 receptor; N 99.6 4.9E-17 1.7E-21 143.5 0.8 133 200-337 54-186 (285)
70 3o53_A Protein LRIM1, AGAP0063 99.6 1.1E-17 3.8E-22 149.8 -3.5 223 195-468 27-249 (317)
71 1ozn_A Reticulon 4 receptor; N 99.6 1.6E-16 5.5E-21 140.2 2.8 222 205-440 14-235 (285)
72 3zyi_A Leucine-rich repeat-con 99.6 5E-17 1.7E-21 153.3 -0.7 157 200-365 145-301 (452)
73 3zyj_A Leucine-rich repeat-con 99.6 4.9E-17 1.7E-21 152.8 -1.2 202 98-337 63-264 (440)
74 4fcg_A Uncharacterized protein 99.6 1.6E-17 5.4E-22 149.3 -5.1 225 200-466 79-311 (328)
75 1wwl_A Monocyte differentiatio 99.6 9.1E-16 3.1E-20 137.1 4.8 207 200-445 93-310 (312)
76 3g06_A SSPH2 (leucine-rich rep 99.6 1.3E-14 4.4E-19 140.4 12.6 123 302-449 180-302 (622)
77 3un9_A NLR family member X1; l 99.5 7.4E-14 2.5E-18 126.9 14.7 172 277-453 71-261 (372)
78 3un9_A NLR family member X1; l 99.5 1.3E-13 4.6E-18 125.2 15.6 190 251-446 71-285 (372)
79 3oja_A Leucine-rich immune mol 99.5 3.1E-16 1.1E-20 148.6 -1.9 219 224-469 32-250 (487)
80 3g06_A SSPH2 (leucine-rich rep 99.5 7.3E-15 2.5E-19 142.1 7.4 216 201-467 80-295 (622)
81 4glp_A Monocyte differentiatio 99.5 3.2E-15 1.1E-19 133.5 3.9 205 251-467 90-305 (310)
82 4glp_A Monocyte differentiatio 99.5 3.5E-14 1.2E-18 126.7 9.9 229 176-445 64-308 (310)
83 1h6u_A Internalin H; cell adhe 99.5 4E-14 1.4E-18 125.9 10.0 196 221-445 36-231 (308)
84 3e4g_A ATP synthase subunit S, 99.5 2.8E-14 9.5E-19 112.3 6.8 105 354-460 61-171 (176)
85 1h6u_A Internalin H; cell adhe 99.5 8.7E-14 3E-18 123.7 9.7 196 200-423 39-234 (308)
86 2z62_A TOLL-like receptor 4, v 99.5 2.6E-15 8.8E-20 131.8 -0.3 203 202-440 28-234 (276)
87 2o6q_A Variable lymphocyte rec 99.4 1.2E-14 4.3E-19 126.8 0.7 181 251-441 36-216 (270)
88 3rfs_A Internalin B, repeat mo 99.4 2.3E-14 8E-19 125.2 2.1 180 221-440 36-215 (272)
89 3e4g_A ATP synthase subunit S, 99.4 1.6E-13 5.5E-18 107.9 6.5 105 303-409 61-170 (176)
90 2z62_A TOLL-like receptor 4, v 99.4 7.2E-15 2.4E-19 129.0 -1.4 182 276-467 50-235 (276)
91 1p9a_G Platelet glycoprotein I 99.4 3.3E-14 1.1E-18 125.1 2.0 201 222-441 6-206 (290)
92 3rfs_A Internalin B, repeat mo 99.4 9.4E-14 3.2E-18 121.3 2.6 159 299-468 59-217 (272)
93 4ezg_A Putative uncharacterize 99.4 2.8E-13 9.6E-18 112.1 4.4 149 277-440 43-191 (197)
94 1h6t_A Internalin B; cell adhe 99.4 9.7E-13 3.3E-17 115.9 7.8 170 251-445 45-214 (291)
95 2o6q_A Variable lymphocyte rec 99.4 1.5E-13 5.1E-18 120.0 2.5 138 275-420 82-219 (270)
96 2xwt_C Thyrotropin receptor; s 99.3 2.5E-14 8.4E-19 122.6 -4.2 109 352-469 125-239 (239)
97 2xwt_C Thyrotropin receptor; s 99.3 2.6E-14 8.8E-19 122.5 -4.7 111 200-316 103-218 (239)
98 4ezg_A Putative uncharacterize 99.3 5.3E-12 1.8E-16 104.3 7.8 130 175-316 65-194 (197)
99 1h6t_A Internalin B; cell adhe 99.3 6.1E-12 2.1E-16 110.8 8.6 182 220-427 40-221 (291)
100 1m9s_A Internalin B; cell inva 99.3 5.5E-12 1.9E-16 121.9 8.8 170 251-445 42-211 (605)
101 1m9s_A Internalin B; cell inva 99.2 4.9E-12 1.7E-16 122.3 6.2 184 220-429 37-220 (605)
102 3sb4_A Hypothetical leucine ri 99.2 1.1E-12 3.8E-17 118.0 1.2 222 225-463 100-328 (329)
103 3m19_A Variable lymphocyte rec 99.2 9.1E-13 3.1E-17 113.6 0.0 178 253-444 15-192 (251)
104 3m19_A Variable lymphocyte rec 99.2 2.3E-12 7.7E-17 111.1 2.2 161 251-421 34-194 (251)
105 2ra8_A Uncharacterized protein 99.2 4E-11 1.4E-15 107.9 10.2 82 251-336 138-227 (362)
106 1io0_A Tropomodulin; LRR prote 99.2 8E-10 2.7E-14 89.8 15.4 126 319-447 27-167 (185)
107 1p9a_G Platelet glycoprotein I 99.2 1.7E-12 5.9E-17 114.2 -0.7 199 251-468 9-207 (290)
108 2ra8_A Uncharacterized protein 99.2 1.6E-10 5.6E-15 104.0 12.0 73 379-453 251-329 (362)
109 2je0_A Acidic leucine-rich nuc 99.1 2.1E-11 7.1E-16 95.8 3.5 85 378-465 62-149 (149)
110 2ell_A Acidic leucine-rich nuc 99.1 1.3E-11 4.6E-16 99.1 1.7 111 352-469 47-160 (168)
111 3sb4_A Hypothetical leucine ri 99.1 5.4E-12 1.8E-16 113.5 -1.1 292 124-437 24-328 (329)
112 1io0_A Tropomodulin; LRR prote 99.1 2.6E-09 8.9E-14 86.7 14.6 126 294-422 27-167 (185)
113 1xeu_A Internalin C; cellular 99.1 2.8E-11 9.7E-16 104.7 3.0 149 275-445 38-186 (263)
114 2ell_A Acidic leucine-rich nuc 99.1 1.7E-11 5.7E-16 98.5 0.4 85 352-440 69-157 (168)
115 4ay9_X Follicle-stimulating ho 99.1 6.8E-13 2.3E-17 120.4 -8.9 36 202-237 30-65 (350)
116 1dce_A Protein (RAB geranylger 99.0 5.9E-12 2E-16 121.0 -3.6 156 294-463 400-567 (567)
117 1fs1_A SKP2 F-BOX, cyclin A/CD 99.0 1.7E-10 6E-15 71.6 4.3 41 8-50 5-45 (53)
118 2je0_A Acidic leucine-rich nuc 99.0 6.4E-10 2.2E-14 87.2 8.6 129 202-336 17-148 (149)
119 1xeu_A Internalin C; cellular 99.0 3.3E-10 1.1E-14 97.9 5.0 174 225-425 18-191 (263)
120 2o6s_A Variable lymphocyte rec 99.0 4E-11 1.4E-15 100.1 -1.5 83 278-364 28-110 (208)
121 4ay9_X Follicle-stimulating ho 98.9 7.6E-12 2.6E-16 113.5 -7.3 154 200-363 102-255 (350)
122 2xot_A Amphoterin-induced prot 98.9 9.4E-11 3.2E-15 106.7 -0.1 156 278-440 39-199 (361)
123 2v70_A SLIT-2, SLIT homolog 2 98.9 1E-10 3.5E-15 98.3 -0.7 135 303-444 32-166 (220)
124 1ds9_A Outer arm dynein; leuci 98.9 7.2E-11 2.5E-15 97.6 -2.0 104 351-462 67-180 (198)
125 2v9t_B SLIT homolog 2 protein 98.9 1.9E-10 6.4E-15 96.7 -0.4 131 303-440 32-162 (220)
126 3cvr_A Invasion plasmid antige 98.9 6.8E-09 2.3E-13 99.3 9.9 37 408-446 209-245 (571)
127 1dce_A Protein (RAB geranylger 98.9 1.7E-10 5.9E-15 110.8 -1.3 179 123-316 347-546 (567)
128 1a9n_A U2A', U2A'; complex (nu 98.8 6.8E-10 2.3E-14 89.7 2.2 135 299-444 15-153 (176)
129 2o6s_A Variable lymphocyte rec 98.8 4E-10 1.4E-14 94.0 0.5 132 302-440 27-158 (208)
130 2xot_A Amphoterin-induced prot 98.8 3.3E-10 1.1E-14 103.2 -0.1 161 251-420 38-203 (361)
131 3cvr_A Invasion plasmid antige 98.8 7.3E-10 2.5E-14 106.0 2.1 177 252-468 59-242 (571)
132 1a9n_A U2A', U2A'; complex (nu 98.8 8.8E-10 3E-14 89.1 2.2 135 277-420 18-154 (176)
133 3e6j_A Variable lymphocyte rec 98.8 9E-10 3.1E-14 93.2 1.7 84 352-440 86-169 (229)
134 2v70_A SLIT-2, SLIT homolog 2 98.8 4.8E-10 1.6E-14 94.2 -0.2 135 278-420 32-167 (220)
135 2v9t_B SLIT homolog 2 protein 98.7 3.6E-09 1.2E-13 88.8 3.4 34 202-235 32-65 (220)
136 1ds9_A Outer arm dynein; leuci 98.7 7.5E-10 2.6E-14 91.4 -0.8 127 298-436 43-180 (198)
137 3e6j_A Variable lymphocyte rec 98.7 7.9E-09 2.7E-13 87.3 3.9 60 202-263 40-99 (229)
138 4fs7_A Uncharacterized protein 98.7 5.7E-10 2E-14 102.9 -3.7 232 200-461 160-393 (394)
139 1pgv_A TMD-1, tropomodulin TMD 98.6 2.2E-06 7.7E-11 68.7 14.1 121 318-440 31-167 (197)
140 2wfh_A SLIT homolog 2 protein 98.6 1.8E-08 6E-13 82.5 2.0 107 327-440 30-136 (193)
141 1w8a_A SLIT protein; signaling 98.5 8.3E-09 2.8E-13 84.5 -1.2 129 306-444 11-139 (192)
142 1w8a_A SLIT protein; signaling 98.5 5.8E-09 2E-13 85.5 -3.0 131 281-421 11-141 (192)
143 1pgv_A TMD-1, tropomodulin TMD 98.4 2.9E-06 1E-10 68.1 12.2 125 294-420 32-171 (197)
144 2o6r_A Variable lymphocyte rec 98.4 4.1E-08 1.4E-12 79.3 1.1 129 305-444 9-137 (177)
145 2wfh_A SLIT homolog 2 protein 98.4 8.5E-08 2.9E-12 78.4 1.9 109 303-419 31-139 (193)
146 4fdw_A Leucine rich hypothetic 98.4 9.2E-09 3.1E-13 94.4 -4.5 78 149-235 112-189 (401)
147 4fs7_A Uncharacterized protein 98.3 1.1E-08 3.7E-13 94.4 -5.3 303 123-465 69-375 (394)
148 4fdw_A Leucine rich hypothetic 98.3 1.6E-08 5.5E-13 92.8 -4.4 268 123-440 111-380 (401)
149 4b8c_D Glucose-repressible alc 98.3 8.2E-08 2.8E-12 95.4 0.1 110 326-446 222-331 (727)
150 2o6r_A Variable lymphocyte rec 98.2 1.1E-06 3.7E-11 70.8 4.4 110 202-316 28-137 (177)
151 4b8c_D Glucose-repressible alc 98.2 1.2E-07 4.2E-12 94.1 -2.0 138 295-444 216-354 (727)
152 2e31_A FBS1, F-box only protei 98.1 1.8E-06 6.1E-11 73.8 4.3 41 9-51 48-89 (297)
153 3g39_A Variable lymphocyte rec 98.1 9.3E-07 3.2E-11 70.6 2.0 101 354-459 30-135 (170)
154 2r9u_A Variable lymphocyte rec 98.1 1.1E-06 3.9E-11 70.3 2.0 86 354-444 33-118 (174)
155 3l2o_B F-box only protein 4; s 98.0 1.7E-06 5.9E-11 72.8 2.8 39 11-51 4-42 (312)
156 4gt6_A Cell surface protein; l 98.0 6.7E-07 2.3E-11 82.3 0.0 308 123-465 61-387 (394)
157 4gt6_A Cell surface protein; l 97.9 7E-07 2.4E-11 82.2 -1.5 308 99-440 64-388 (394)
158 3rw6_A Nuclear RNA export fact 97.9 3.7E-05 1.3E-09 65.4 8.7 85 377-464 167-259 (267)
159 3g39_A Variable lymphocyte rec 97.8 6.1E-06 2.1E-10 65.8 2.1 107 305-421 11-117 (170)
160 2r9u_A Variable lymphocyte rec 97.8 6.7E-06 2.3E-10 65.8 2.1 106 306-421 15-120 (174)
161 3v7d_B Cell division control p 97.7 1.1E-05 3.6E-10 76.2 2.4 43 6-50 9-51 (464)
162 2ifg_A High affinity nerve gro 97.5 2.6E-05 9.1E-10 70.3 2.4 104 333-444 13-116 (347)
163 2ovr_B FBW7, F-BOX/WD repeat p 97.5 6.8E-05 2.3E-09 70.2 4.2 43 6-50 13-55 (445)
164 3rw6_A Nuclear RNA export fact 97.5 0.00049 1.7E-08 58.5 9.0 67 249-316 167-233 (267)
165 1p22_A F-BOX/WD-repeat protein 97.4 4.7E-05 1.6E-09 71.1 2.4 42 7-50 6-51 (435)
166 2ifg_A High affinity nerve gro 97.4 5.5E-05 1.9E-09 68.2 1.9 106 306-420 11-117 (347)
167 4h09_A Hypothetical leucine ri 97.2 9.2E-06 3.1E-10 74.4 -5.4 129 298-439 212-342 (379)
168 4h09_A Hypothetical leucine ri 97.1 9.9E-06 3.4E-10 74.1 -5.5 143 276-432 215-358 (379)
169 3rfe_A Platelet glycoprotein I 90.3 0.2 6.8E-06 37.2 3.2 34 407-440 32-65 (130)
170 3rfe_A Platelet glycoprotein I 75.2 3 0.0001 30.7 3.9 33 203-235 32-64 (130)
171 2lz0_A Uncharacterized protein 51.4 2.4 8.3E-05 29.4 -0.6 36 404-440 18-53 (100)
172 2lz0_A Uncharacterized protein 43.0 14 0.00049 25.5 2.3 35 377-415 17-52 (100)
173 2kwv_A RAD30 homolog B, DNA po 28.1 26 0.0009 19.8 1.3 15 11-25 20-34 (48)
No 1
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=2.7e-44 Score=353.35 Aligned_cols=447 Identities=20% Similarity=0.264 Sum_probs=247.3
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccch--hhHHHHhccCCCccEEecCCCCCCCh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCA--ETLSRTSARYPFITQLDLSLCPRAND 86 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~--~~l~~~~~~~~~l~~L~l~~~~~~~~ 86 (473)
.+.|+.||+||+.+||+ |+++.+|+.++++|||+|+++....++.+..... ......+.++++++.++++++....+
T Consensus 3 ~d~~~~LPdevL~~If~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~ 81 (594)
T 2p1m_B 3 KRIALSFPEEVLEHVFS-FIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFAD 81 (594)
T ss_dssp -------CHHHHHHHHH-TCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGG
T ss_pred ccchhhCCHHHHHHHHh-hcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhh
Confidence 36799999999999999 9987999999999999999996555544433321 23456778888899998888754332
Q ss_pred hh-------------HHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHH-cCCCC
Q 012001 87 DA-------------LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA-EAKNL 152 (473)
Q Consensus 87 ~~-------------~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~L 152 (473)
.. +..+ ...+++|++|+++++. ++...+..+...+++|++|++.+|..+++.....+. .+++|
T Consensus 82 ~~l~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L 158 (594)
T 2p1m_B 82 FNLVPDGWGGYVYPWIEAM--SSSYTWLEEIRLKRMV-VTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNL 158 (594)
T ss_dssp GTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTC
T ss_pred cccccccccchhhHHHHHH--HHhCCCCCeEEeeCcE-EcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCC
Confidence 21 2222 3456788888888765 677777777667888888888888666665444444 68888
Q ss_pred CEEecccCcccCHH---HHHHHHhcCCcCceeecccCC-CCCHHHHHHHHhhCCCCcEEeeccc-cCCCCcccccccCcc
Q 012001 153 ERLWLARCKLITDL---GIGRIAACCRKLKLLCLKWCI-RVTDLGVELVALKCQEIRTLDLSYL-PITEKCLPPVVKLQY 227 (473)
Q Consensus 153 ~~L~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~ 227 (473)
++|++.+|. +++. .+..+...+++|++|+++++. .++...+..+...+++|++|++.+| .+.+ ....+..+++
T Consensus 159 ~~L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~ 236 (594)
T 2p1m_B 159 KELDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQ 236 (594)
T ss_dssp CEEECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTT
T ss_pred CEEeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCc
Confidence 888888765 2221 233333346677777777654 3555566666666777777777765 2111 1112223444
Q ss_pred cCeeeccCCCC----------------------------CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 228 LEDLVLEGCHG----------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 228 L~~L~l~~~~~----------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
|++|.+..+.. .....+..+...+++|++|+++++. +++..+..++..+++
T Consensus 237 L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~ 315 (594)
T 2p1m_B 237 LEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPK 315 (594)
T ss_dssp CSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTT
T ss_pred ceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCC
Confidence 44444332210 1111111111124555555555555 444444444555555
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecC---------CcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFED---------CPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV 350 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~---------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 350 (473)
|++|++.++ .....+......+++|+.|++.+ +.+++.++..+...+++|++|.+. |+.+++.++..+.
T Consensus 316 L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~-~~~l~~~~~~~l~ 393 (594)
T 2p1m_B 316 LQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYF-CRQMTNAALITIA 393 (594)
T ss_dssp CCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEE-ESCCCHHHHHHHH
T ss_pred cCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHh-cCCcCHHHHHHHH
Confidence 555555544 11111222222355555555522 234455555554445555555332 3455555554444
Q ss_pred HhCCCCcEEecC-----CCCCCC----HHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 351 QSHKELRKLDIT-----CCRKIT----YASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 351 ~~~~~L~~L~l~-----~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
..+++|+.|+++ +|..++ +.++..++..+++|+.|++++ .+++.++..+...+++|+.|++++|.+++.
T Consensus 394 ~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~ 471 (594)
T 2p1m_B 394 RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDL 471 (594)
T ss_dssp HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHH
T ss_pred hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHH
Confidence 455555555555 344454 444444445555555555543 355555555554455555555555555555
Q ss_pred hhhhh-hcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 422 GLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 422 ~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++..+ ..+++|+.|++++| .+++.++..+...+++|++|++++|+
T Consensus 472 ~~~~l~~~~~~L~~L~L~~n-~~~~~~~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 472 GMHHVLSGCDSLRKLEIRDC-PFGDKALLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHHHHHHCTTCCEEEEESC-SCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhcCCCcCEEECcCC-CCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence 55444 24555555555555 44555555455455555555555554
No 2
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=2.9e-43 Score=345.75 Aligned_cols=460 Identities=18% Similarity=0.222 Sum_probs=317.4
Q ss_pred Cccccc-cCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccc--hhhHHHHhccCCCccEEe
Q 012001 1 MEAKRK-KNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLC--AETLSRTSARYPFITQLD 77 (473)
Q Consensus 1 ~~~~~~-~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~--~~~l~~~~~~~~~l~~L~ 77 (473)
||.... +.......||+||+.+||+ |+++.+|+.+++.|||+|+.+....++.+.... ....+..+.+++++++|+
T Consensus 1 m~~~~~~r~~~~~~~LPdeil~~I~~-~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~ 79 (592)
T 3ogk_B 1 MEDPDIKRCKLSCVATVDDVIEQVMT-YITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLK 79 (592)
T ss_dssp -----------CCCCCGGGTHHHHHT-TCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEE
T ss_pred CCChhhhhHhhccCCCCHHHHHHHHH-hcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEE
Confidence 555432 2223445799999999999 994499999999999999999766655544332 234567788999999999
Q ss_pred cCCCCCCChh-------------hHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCC-CcEEEcCCCCcccHHHH
Q 012001 78 LSLCPRANDD-------------ALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRF-LTEIDLSNGTEMGDAAA 143 (473)
Q Consensus 78 l~~~~~~~~~-------------~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~ 143 (473)
+++++...+. ++..+ ...+++|++|+++++. +....+..+...+++ |++|++++|..+.+...
T Consensus 80 L~~~~~~~~~~~~~~~~~~~~~~~l~~l--~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l 156 (592)
T 3ogk_B 80 LKGKPRAAMFNLIPENWGGYVTPWVTEI--SNNLRQLKSVHFRRMI-VSDLDLDRLAKARADDLETLKLDKCSGFTTDGL 156 (592)
T ss_dssp EECSCGGGGGTCSCTTSCCBCHHHHHHH--HHHCTTCCEEEEESCB-CCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHH
T ss_pred ecCCcchhhcccccccccccchHHHHHH--HhhCCCCCeEEeeccE-ecHHHHHHHHHhccccCcEEECcCCCCcCHHHH
Confidence 9876543321 22222 3367889999998873 666666666655666 99999988865665554
Q ss_pred HHH-HcCCCCCEEecccCcccCH---HHHHHHHhcCCcCceeecccCCC--CCHHHHHHHHhhCCCCcEEeeccccCCCC
Q 012001 144 AAI-AEAKNLERLWLARCKLITD---LGIGRIAACCRKLKLLCLKWCIR--VTDLGVELVALKCQEIRTLDLSYLPITEK 217 (473)
Q Consensus 144 ~~l-~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 217 (473)
..+ ..+++|++|++.+|. +.+ ..+..+...+++|++|+++++.. +....+..+...+++|+.|++.++.+.+
T Consensus 157 ~~~~~~~~~L~~L~L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~- 234 (592)
T 3ogk_B 157 LSIVTHCRKIKTLLMEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE- 234 (592)
T ss_dssp HHHHHHCTTCSEEECTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-
T ss_pred HHHHhhCCCCCEEECcccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-
Confidence 444 368889999988874 322 22555666688888888876543 3456677777788888888888875542
Q ss_pred cccccccCcccCeeeccCCCC------------------------CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHH
Q 012001 218 CLPPVVKLQYLEDLVLEGCHG------------------------IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSL 273 (473)
Q Consensus 218 ~~~~l~~~~~L~~L~l~~~~~------------------------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~ 273 (473)
....+..+++|++|.++.+.. .....+..+...+++|++|+++++. +++..+..+
T Consensus 235 l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~ 313 (592)
T 3ogk_B 235 LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTL 313 (592)
T ss_dssp GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHH
T ss_pred HHHHHhhhhHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHH
Confidence 222333445555555442110 1111222233347788888888877 666666666
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecC-----------CcCChhHHHHHHhhCCCCCeEecCCCCCCC
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFED-----------CPVARSGIKAIGNWHGSLKELSLSKCSGVT 342 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~-----------~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~ 342 (473)
+..+++|++|++.++ .....+......+++|+.|++.+ +.+++.++..+...+++|++|++ .|+.++
T Consensus 314 ~~~~~~L~~L~L~~~-~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l-~~~~l~ 391 (592)
T 3ogk_B 314 IQKCPNLEVLETRNV-IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAV-YVSDIT 391 (592)
T ss_dssp HTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEE-EESCCC
T ss_pred HHhCcCCCEEeccCc-cCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEe-ecCCcc
Confidence 778888888888733 22223344446788888888883 45777777777767888888888 447788
Q ss_pred hHHHHHHHHhCCCCcEEecCC---CCCCCH----HHHHHHHhcCCCCCEEEccCCCC-CCHHHHHHHHhcCccCCeeeec
Q 012001 343 DEELSFVVQSHKELRKLDITC---CRKITY----ASINSITKTCTSLTSLRMECCKL-VSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 343 ~~~~~~~~~~~~~L~~L~l~~---~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
+.++..+...+++|++|++++ |..+++ .++..+...+++|+.|++++|.+ +++.++..+...+++|+.|+++
T Consensus 392 ~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~ 471 (592)
T 3ogk_B 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLG 471 (592)
T ss_dssp HHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEEC
T ss_pred HHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeecc
Confidence 877777777788888888863 445664 45666677788888888877653 6788888887778888888888
Q ss_pred ccccChhhhhhh-hcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCccc
Q 012001 415 ENEVNDEGLKSI-SRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTFHL 471 (473)
Q Consensus 415 ~~~~~~~~~~~l-~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~~ 471 (473)
+|.+++.++..+ ..+++|+.|++++| .+++.++..+...+++|++|++++|. ++.
T Consensus 472 ~n~l~~~~~~~~~~~~~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~ls~n~-it~ 527 (592)
T 3ogk_B 472 YVGESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYR-ASM 527 (592)
T ss_dssp SCCSSHHHHHHHHTCCTTCCEEEEESC-CCBHHHHHHHHHHCSSCCEEEEESCB-CCT
T ss_pred CCCCCHHHHHHHHhcCcccCeeeccCC-CCcHHHHHHHHHhcCccCeeECcCCc-CCH
Confidence 888888776655 46888888888888 58887888887788888888888887 654
No 3
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=100.00 E-value=4.1e-33 Score=273.80 Aligned_cols=391 Identities=18% Similarity=0.254 Sum_probs=312.6
Q ss_pred HHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH
Q 012001 63 LSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA 142 (473)
Q Consensus 63 l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 142 (473)
+..+...+++|++|+++++. +++..+..+ ...+++|++|++.+|..++...+..+...+++|++|++++|. +++..
T Consensus 97 l~~l~~~~~~L~~L~L~~~~-~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-i~~~~ 172 (594)
T 2p1m_B 97 IEAMSSSYTWLEEIRLKRMV-VTDDCLELI--AKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESD-VDDVS 172 (594)
T ss_dssp HHHHHHHCTTCCEEEEESCB-CCHHHHHHH--HHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCE-EECCC
T ss_pred HHHHHHhCCCCCeEEeeCcE-EcHHHHHHH--HHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCc-cCCcc
Confidence 56667789999999999885 677666655 234789999999998778888888888889999999999885 44322
Q ss_pred HHHHH----cCCCCCEEecccCc-ccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeecccc----
Q 012001 143 AAAIA----EAKNLERLWLARCK-LITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP---- 213 (473)
Q Consensus 143 ~~~l~----~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~---- 213 (473)
...+. .+++|++|++.++. .++...+..+...+++|++|++.+|..+. .+......+++|++|.+..+.
T Consensus 173 ~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~--~l~~~~~~~~~L~~L~l~~~~~~~~ 250 (594)
T 2p1m_B 173 GHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVR 250 (594)
T ss_dssp GGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH--HHHHHHHHCTTCSEEECSBCCCCCC
T ss_pred hHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH--HHHHHHhcCCcceEcccccccCccc
Confidence 22232 57799999999875 56677788877779999999999874433 366666788888888765431
Q ss_pred -------------------------CCCCccccc-ccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccch
Q 012001 214 -------------------------ITEKCLPPV-VKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISH 267 (473)
Q Consensus 214 -------------------------~~~~~~~~l-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~ 267 (473)
.....+..+ ..+++|++|++++|. +++..+..+...+++|++|++.++ ..+
T Consensus 251 ~~~~~~l~~~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~--~~~ 327 (594)
T 2p1m_B 251 PDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDY--IED 327 (594)
T ss_dssp HHHHHHHHHHHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGG--GHH
T ss_pred hhhHHHHHHHHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCc--cCH
Confidence 111122222 257899999999977 888777777767999999999987 556
Q ss_pred HHHHHHHhcCcccceeeccc--------cccCchhHHHhhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC--
Q 012001 268 VGLSSLIKGADYLQQLILAY--------SFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (473)
Q Consensus 268 ~~~~~~~~~~~~L~~L~l~~--------~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (473)
.++..+...+++|++|++.. +..+.+.....+. .+++|+.|.+..+.+++..+..+...+++|++|++.
T Consensus 328 ~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~ 407 (594)
T 2p1m_B 328 AGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCII 407 (594)
T ss_dssp HHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEES
T ss_pred HHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecc
Confidence 67777778899999999933 3345554444444 599999999988899999999998789999999999
Q ss_pred ---CCCCCC----hHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCC
Q 012001 337 ---KCSGVT----DEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLE 409 (473)
Q Consensus 337 ---~~~~~~----~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 409 (473)
+|+.++ +.++..++..+++|+.|++++ .+++..+..+...+++|+.|++++|. +++.++..+...+++|+
T Consensus 408 ~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~-i~~~~~~~l~~~~~~L~ 484 (594)
T 2p1m_B 408 EPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAG-DSDLGMHHVLSGCDSLR 484 (594)
T ss_dssp STTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCC-SSHHHHHHHHHHCTTCC
T ss_pred cCCCcccccCCchhhHHHHHHhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCC-CcHHHHHHHHhcCCCcC
Confidence 677888 778888899999999999977 69999999888789999999999976 89999988877899999
Q ss_pred eeeecccccChhhhhhhh-cCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 410 ELDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 410 ~L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
.|++++|.+++.++..+. .+++|+.|++++| .+++.++..+...+|+|+...+.+.
T Consensus 485 ~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~-~~~~~~~~~l~~~lp~l~i~~~~~~ 541 (594)
T 2p1m_B 485 KLEIRDCPFGDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVIDER 541 (594)
T ss_dssp EEEEESCSCCHHHHHHTGGGGGGSSEEEEESS-CCBHHHHHHHHHHCTTEEEEEECSS
T ss_pred EEECcCCCCcHHHHHHHHHhCCCCCEEeeeCC-CCCHHHHHHHHHhCCCCEEEEecCC
Confidence 999999999988877655 5999999999999 7799899998888999977665543
No 4
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=100.00 E-value=6.8e-32 Score=264.96 Aligned_cols=394 Identities=14% Similarity=0.155 Sum_probs=312.5
Q ss_pred hHHHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHH
Q 012001 62 TLSRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA 141 (473)
Q Consensus 62 ~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 141 (473)
.+..+...+++|++|+++++ .+++..+..+ ......+|++|+++++..+....+..+...+++|++|+++++. +.+.
T Consensus 103 ~l~~l~~~~~~L~~L~L~~~-~i~~~~~~~l-~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~~ 179 (592)
T 3ogk_B 103 WVTEISNNLRQLKSVHFRRM-IVSDLDLDRL-AKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESS-FSEK 179 (592)
T ss_dssp HHHHHHHHCTTCCEEEEESC-BCCHHHHHHH-HHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCE-EECC
T ss_pred HHHHHHhhCCCCCeEEeecc-EecHHHHHHH-HHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccc-ccCc
Confidence 46667779999999999988 4666666655 2222235999999998877888888888899999999999984 3322
Q ss_pred ----HHHHHHcCCCCCEEecccCcc--cCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCC
Q 012001 142 ----AAAAIAEAKNLERLWLARCKL--ITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPIT 215 (473)
Q Consensus 142 ----~~~~l~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 215 (473)
.......+++|++|++.++.. +....+..+...+++|++|++.++. +.. +......+++|++|.+......
T Consensus 180 ~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-~~~--l~~~~~~~~~L~~L~l~~~~~~ 256 (592)
T 3ogk_B 180 DGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE-ILE--LVGFFKAAANLEEFCGGSLNED 256 (592)
T ss_dssp CSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB-GGG--GHHHHHHCTTCCEEEECBCCCC
T ss_pred chhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc-HHH--HHHHHhhhhHHHhhcccccccc
Confidence 223456799999999987653 3466777777789999999999864 333 3345568899999998743111
Q ss_pred -------------------------CCccc-ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHH
Q 012001 216 -------------------------EKCLP-PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVG 269 (473)
Q Consensus 216 -------------------------~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~ 269 (473)
...+. .+..+++|++|++++|. +++..+..+...+++|+.|++. ..+.+.+
T Consensus 257 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~-l~~~~~~~~~~~~~~L~~L~L~--~~~~~~~ 333 (592)
T 3ogk_B 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYAL-LETEDHCTLIQKCPNLEVLETR--NVIGDRG 333 (592)
T ss_dssp TTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCC-CCHHHHHHHHTTCTTCCEEEEE--GGGHHHH
T ss_pred cchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCc-CCHHHHHHHHHhCcCCCEEecc--CccCHHH
Confidence 11122 23368899999999976 7877776666669999999998 3466777
Q ss_pred HHHHHhcCcccceeeccc----------cccCchhH-HHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC--
Q 012001 270 LSSLIKGADYLQQLILAY----------SFWVSADL-SKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS-- 336 (473)
Q Consensus 270 ~~~~~~~~~~L~~L~l~~----------~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~-- 336 (473)
+..+...+++|++|++++ +..+.... ......+++|+.|++..+.+++..+..++..+++|++|++.
T Consensus 334 l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~ 413 (592)
T 3ogk_B 334 LEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLL 413 (592)
T ss_dssp HHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEEC
T ss_pred HHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeec
Confidence 888888899999999994 55565543 34456799999999988899999999998779999999997
Q ss_pred -CCCCCCh----HHHHHHHHhCCCCcEEecCCCC-CCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 337 -KCSGVTD----EELSFVVQSHKELRKLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 337 -~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
.|+.+++ .++..++..+++|++|++++|. .+++..+..+...+++|+.|++++|. +++.++..+...+++|+.
T Consensus 414 ~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~L~~ 492 (592)
T 3ogk_B 414 DREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVG-ESDEGLMEFSRGCPNLQK 492 (592)
T ss_dssp SCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCC-SSHHHHHHHHTCCTTCCE
T ss_pred CCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCC-CCHHHHHHHHhcCcccCe
Confidence 3567775 5788888899999999998765 47888898888889999999999865 898898888889999999
Q ss_pred eeecccccChhhhhhhh-cCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 411 LDITENEVNDEGLKSIS-RCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
|++++|.+++.++..+. .+++|+.|++++| ++++.++..+.+.+|.+....+...
T Consensus 493 L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n-~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 493 LEMRGCCFSERAIAAAVTKLPSLRYLWVQGY-RASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp EEEESCCCBHHHHHHHHHHCSSCCEEEEESC-BCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred eeccCCCCcHHHHHHHHHhcCccCeeECcCC-cCCHHHHHHHHHhCCCcEEEEecCc
Confidence 99999999988777654 6999999999999 7999888888888998877666543
No 5
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=4.5e-29 Score=237.20 Aligned_cols=383 Identities=21% Similarity=0.277 Sum_probs=284.0
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHH---HHHHHhhcCCCCcEEEcCCCCcccHHHHHHHH
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKV---GLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIA 147 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~ 147 (473)
+++++|+++++. +++..+..+ ...+++|++|+++++. +... .+......+++|++|+++++ .+.+.....+.
T Consensus 3 ~~l~~L~Ls~~~-l~~~~~~~~--~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~ 77 (461)
T 1z7x_W 3 LDIQSLDIQCEE-LSDARWAEL--LPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVL 77 (461)
T ss_dssp EEEEEEEEESCC-CCHHHHHHH--HHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHH
T ss_pred ccceehhhhhcc-cCchhHHHH--HhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCC-cCChHHHHHHH
Confidence 468899998764 555554443 3567899999999886 5544 44455557899999999998 57776555555
Q ss_pred c-CC----CCCEEecccCcccCHHH---HHHHHhcCCcCceeecccCCCCCHHHHHHHHhh----CCCCcEEeeccccCC
Q 012001 148 E-AK----NLERLWLARCKLITDLG---IGRIAACCRKLKLLCLKWCIRVTDLGVELVALK----CQEIRTLDLSYLPIT 215 (473)
Q Consensus 148 ~-~~----~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~ 215 (473)
. ++ +|++|++.+|. +++.+ +......+++|++|+++++. +++.+...+... .++|++|++++|.++
T Consensus 78 ~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~ 155 (461)
T 1z7x_W 78 QGLQTPSCKIQKLSLQNCC-LTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCSLS 155 (461)
T ss_dssp HTTCSTTCCCCEEECTTSC-CBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCB
T ss_pred HHHhhCCCceeEEEccCCC-CCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCCCC
Confidence 4 55 69999999975 66543 33344568999999999975 776666655443 467999999999888
Q ss_pred CCcccc----cccCcccCeeeccCCCCCChHHHHHHHh----cCCCCcEEecCCCCccchHH---HHHHHhcCcccceee
Q 012001 216 EKCLPP----VVKLQYLEDLVLEGCHGIDDDGLASVEY----SCKSLKALNLSKCQNISHVG---LSSLIKGADYLQQLI 284 (473)
Q Consensus 216 ~~~~~~----l~~~~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~ 284 (473)
+..... +..+++|++|+++++. +++.....+.. ..++|++|+++++. ++..+ +...+..+++|++|+
T Consensus 156 ~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~ 233 (461)
T 1z7x_W 156 AASCEPLASVLRAKPDFKELTVSNND-INEAGVRVLCQGLKDSPCQLEALKLESCG-VTSDNCRDLCGIVASKASLRELA 233 (461)
T ss_dssp GGGHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHHHSCCCCCEEECTTSC-CBTTHHHHHHHHHHHCTTCCEEE
T ss_pred HHHHHHHHHHHhhCCCCCEEECcCCC-cchHHHHHHHHHHhcCCCCceEEEccCCC-CcHHHHHHHHHHHHhCCCccEEe
Confidence 766444 3467999999999954 77766665554 25699999999987 44433 455566789999999
Q ss_pred ccccccCchhHHH-----hhhCCCCCCeeEecCCcCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHHHHHHh----
Q 012001 285 LAYSFWVSADLSK-----CLHNFPMLQSIKFEDCPVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFVVQS---- 352 (473)
Q Consensus 285 l~~~~~~~~~~~~-----~l~~~~~L~~L~l~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~~~~---- 352 (473)
++++. +.+.... ....+++|+.|++++|.+++.+...+.. .+++|++|++++ +.+++.+...+...
T Consensus 234 Ls~n~-l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~~~ 311 (461)
T 1z7x_W 234 LGSNK-LGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAG-NELGDEGARLLCETLLEP 311 (461)
T ss_dssp CCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTT-CCCHHHHHHHHHHHHTST
T ss_pred ccCCc-CChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCC-CCCchHHHHHHHHHhccC
Confidence 99984 4433222 2235899999999999999887554442 589999999999 47777665555443
Q ss_pred CCCCcEEecCCCCCCCHHHH---HHHHhcCCCCCEEEccCCCCCCHHHHHHHHhc----CccCCeeeecccccChhhhhh
Q 012001 353 HKELRKLDITCCRKITYASI---NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ----CQYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~---~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~ 425 (473)
.++|++|++++|. +++.+. ......+++|+.|++++| .+++.+...+... +++|+.|++++|.+++.+...
T Consensus 312 ~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 389 (461)
T 1z7x_W 312 GCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389 (461)
T ss_dssp TCCCCEEECTTSC-CBGGGHHHHHHHHHHCSSCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHH
T ss_pred CccceeeEcCCCC-CchHHHHHHHHHHhhCCCccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHH
Confidence 2699999999986 665543 334456899999999997 5888777766542 679999999999999855444
Q ss_pred ----hhcCCCCCeeecCCCCCcchHHHHHHHhcCc----cCCeeecCCCC
Q 012001 426 ----ISRCSKLSSLKLGICSNITDEGLKHVGSTCS----MLKELDLYRFV 467 (473)
Q Consensus 426 ----l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~----~L~~L~l~~c~ 467 (473)
+..+++|++|++++| .+++.++..+.+.++ +|+.|.+.++.
T Consensus 390 l~~~l~~~~~L~~L~l~~N-~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~ 438 (461)
T 1z7x_W 390 LAATLLANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYDIY 438 (461)
T ss_dssp HHHHHHHCCCCCEEECCSS-SCCHHHHHHHHHHHTSTTCCCCEEECTTCC
T ss_pred HHHHHHhCCCccEEECCCC-CCCHHHHHHHHHHhccCCcchhheeecccc
Confidence 456899999999999 999988888776443 58888887764
No 6
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.6e-28 Score=233.39 Aligned_cols=388 Identities=20% Similarity=0.268 Sum_probs=289.7
Q ss_pred hhHHHHhccCCCccEEecCCCCCCChhhHHhhh-ccccCCCccEEEcCCCccccHHHHHHHhhcCC----CCcEEEcCCC
Q 012001 61 ETLSRTSARYPFITQLDLSLCPRANDDALSIVS-SSSWKLTLRSINLSRSRLFTKVGLSSLTVNCR----FLTEIDLSNG 135 (473)
Q Consensus 61 ~~l~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~-~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~ 135 (473)
..+...+..+++++.|+++++. +.+.....++ ....+++|++|+++++. +....+..+...++ +|++|+++++
T Consensus 18 ~~~~~~~~~~~~L~~L~L~~~~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~L~~n 95 (461)
T 1z7x_W 18 ARWAELLPLLQQCQVVRLDDCG-LTEARCKDISSALRVNPALAELNLRSNE-LGDVGVHCVLQGLQTPSCKIQKLSLQNC 95 (461)
T ss_dssp HHHHHHHHHHTTCSEEEEESSC-CCHHHHHHHHHHHHTCTTCCEEECTTCC-CHHHHHHHHHHTTCSTTCCCCEEECTTS
T ss_pred hhHHHHHhhcCCccEEEccCCC-CCHHHHHHHHHHHHhCCCcCEEeCCCCc-CChHHHHHHHHHHhhCCCceeEEEccCC
Confidence 3456668889999999999985 5655444442 24567899999999875 67767777776676 7999999998
Q ss_pred CcccH----HHHHHHHcCCCCCEEecccCcccCHHHHHHHHhc----CCcCceeecccCCCCCHHH---HHHHHhhCCCC
Q 012001 136 TEMGD----AAAAAIAEAKNLERLWLARCKLITDLGIGRIAAC----CRKLKLLCLKWCIRVTDLG---VELVALKCQEI 204 (473)
Q Consensus 136 ~~~~~----~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L 204 (473)
.+++ .....+..+++|++|+++++. +++.++..+... .++|++|++++|. +++.+ +......+++|
T Consensus 96 -~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L 172 (461)
T 1z7x_W 96 -CLTGAGCGVLSSTLRTLPTLQELHLSDNL-LGDAGLQLLCEGLLDPQCRLEKLQLEYCS-LSAASCEPLASVLRAKPDF 172 (461)
T ss_dssp -CCBGGGHHHHHHHTTSCTTCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CBGGGHHHHHHHHHHCTTC
T ss_pred -CCCHHHHHHHHHHHccCCceeEEECCCCc-CchHHHHHHHHHHhcCCCcceEEECCCCC-CCHHHHHHHHHHHhhCCCC
Confidence 4664 234566789999999999976 777666665553 4579999999874 55433 34445578999
Q ss_pred cEEeeccccCCCCccccccc-----CcccCeeeccCCCCCChHHH----HHHHhcCCCCcEEecCCCCccchHHHHHHHh
Q 012001 205 RTLDLSYLPITEKCLPPVVK-----LQYLEDLVLEGCHGIDDDGL----ASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~~~~~~~----~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (473)
++|++++|.+++.....+.. .++|++|++++| .+++.+. ..+. .+++|++|+++++. +++.++..+..
T Consensus 173 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~-~~~~L~~L~Ls~n~-l~~~~~~~l~~ 249 (461)
T 1z7x_W 173 KELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVA-SKASLRELALGSNK-LGDVGMAELCP 249 (461)
T ss_dssp CEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHH-HCTTCCEEECCSSB-CHHHHHHHHHH
T ss_pred CEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHH-hCCCccEEeccCCc-CChHHHHHHHH
Confidence 99999999887766666542 669999999996 4555432 2333 38999999999886 56555444332
Q ss_pred ----cCcccceeeccccccCchh----HHHhhhCCCCCCeeEecCCcCChhHHHHHHhh----CCCCCeEecCCCCCCCh
Q 012001 276 ----GADYLQQLILAYSFWVSAD----LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW----HGSLKELSLSKCSGVTD 343 (473)
Q Consensus 276 ----~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~ 343 (473)
.+++|++|+++++. +... ++..+..+++|+.|++++|.+.+.++..+... .++|++|++++| .+++
T Consensus 250 ~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~ 327 (461)
T 1z7x_W 250 GLLHPSSRLRTLWIWECG-ITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTA 327 (461)
T ss_dssp HHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBG
T ss_pred HHhcCCCCceEEECcCCC-CCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCC-CCch
Confidence 57899999999984 4443 56667789999999999999988877777643 369999999996 4665
Q ss_pred H---HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc----CCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeee
Q 012001 344 E---ELSFVVQSHKELRKLDITCCRKITYASINSITKT----CTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDI 413 (473)
Q Consensus 344 ~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l 413 (473)
. .+...+..+++|++|+++++. +++.+...+... .++|+.|++++|. +++.+...+. ..+++|++|++
T Consensus 328 ~~~~~l~~~l~~~~~L~~L~Ls~n~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n~-i~~~~~~~l~~~l~~~~~L~~L~l 405 (461)
T 1z7x_W 328 ACCSHFSSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQPGSVLRVLWLADCD-VSDSSCSSLAATLLANHSLRELDL 405 (461)
T ss_dssp GGHHHHHHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHHHHHCCCCCEEEC
T ss_pred HHHHHHHHHHhhCCCccEEEccCCc-cccccHHHHHHHHcCCCCceEEEECCCCC-CChhhHHHHHHHHHhCCCccEEEC
Confidence 4 355667788999999999984 888777666542 6799999999975 8875544433 36899999999
Q ss_pred cccccChhhhhhhhc-----CCCCCeeecCCCCCcch---HHHHHHHhcCccCCee
Q 012001 414 TENEVNDEGLKSISR-----CSKLSSLKLGICSNITD---EGLKHVGSTCSMLKEL 461 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~-----~~~L~~L~l~~~~~l~~---~~~~~~~~~~~~L~~L 461 (473)
++|.+++.+...+.. ..+|+.|.+.++ .... ..+..+.+..|+|+.+
T Consensus 406 ~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~-~~~~~~~~~l~~l~~~~p~l~i~ 460 (461)
T 1z7x_W 406 SNNCLGDAGILQLVESVRQPGCLLEQLVLYDI-YWSEEMEDRLQALEKDKPSLRVI 460 (461)
T ss_dssp CSSSCCHHHHHHHHHHHTSTTCCCCEEECTTC-CCCHHHHHHHHHHHHHCTTSEEE
T ss_pred CCCCCCHHHHHHHHHHhccCCcchhheeeccc-ccCHHHHHHHHHHhccCCCcEee
Confidence 999999998877662 346888888877 4443 3455666678888765
No 7
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.96 E-value=4.7e-29 Score=226.73 Aligned_cols=296 Identities=19% Similarity=0.267 Sum_probs=186.8
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhhhhcccccchhhHHHHhccCCCccEEecCCCCCCChhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRHRKILKPLCAETLSRTSARYPFITQLDLSLCPRANDDA 88 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~~L~l~~~~~~~~~~ 88 (473)
...|++||+|++.+||+ |++ .+|+.+++.|||+|++++... ..++.+++++... .+..
T Consensus 6 ~~~~~~LP~eil~~If~-~L~-~~d~~~~~~vc~~W~~~~~~~-------------------~~~~~l~l~~~~~-~~~~ 63 (336)
T 2ast_B 6 GVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASDE-------------------SLWQTLDLTGKNL-HPDV 63 (336)
T ss_dssp -CCSSSSCHHHHHHHHT-TSC-HHHHHHTTSSCHHHHHHHTCS-------------------TTSSEEECTTCBC-CHHH
T ss_pred cCChhhCCHHHHHHHHH-hCC-HHHHHHHHHHHHHHHHHhcCc-------------------hhheeeccccccC-CHHH
Confidence 45799999999999999 997 999999999999999987432 1245555554322 2222
Q ss_pred HHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHH-HHHHHHcCCCCCEEecccCcccCHHH
Q 012001 89 LSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDA-AAAAIAEAKNLERLWLARCKLITDLG 167 (473)
Q Consensus 89 ~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~ 167 (473)
+..+ ..++++.++++++. +.... ..+. .+++|++|+++++. +.+. ....+..+++|++|++.++. +++..
T Consensus 64 ~~~~----~~~~l~~L~l~~n~-l~~~~-~~~~-~~~~L~~L~L~~~~-l~~~~~~~~~~~~~~L~~L~L~~~~-l~~~~ 134 (336)
T 2ast_B 64 TGRL----LSQGVIAFRCPRSF-MDQPL-AEHF-SPFRVQHMDLSNSV-IEVSTLHGILSQCSKLQNLSLEGLR-LSDPI 134 (336)
T ss_dssp HHHH----HHTTCSEEECTTCE-ECSCC-CSCC-CCBCCCEEECTTCE-ECHHHHHHHHTTBCCCSEEECTTCB-CCHHH
T ss_pred HHhh----hhccceEEEcCCcc-ccccc-hhhc-cCCCCCEEEccCCC-cCHHHHHHHHhhCCCCCEEeCcCcc-cCHHH
Confidence 2111 12456666665542 11110 1122 45666666666663 4443 33345556666666666653 55544
Q ss_pred HHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccc-cCCCCccc-ccccCc-ccCeeeccCCC-CCChHH
Q 012001 168 IGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYL-PITEKCLP-PVVKLQ-YLEDLVLEGCH-GIDDDG 243 (473)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~-~l~~~~-~L~~L~l~~~~-~~~~~~ 243 (473)
...+.. +++|++|++++|..+++..+......+++|++|++++| .+++..+. .+..++ +|++|++++|. .+++..
T Consensus 135 ~~~l~~-~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~ 213 (336)
T 2ast_B 135 VNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 213 (336)
T ss_dssp HHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHH
T ss_pred HHHHhc-CCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHH
Confidence 444444 66677777766655666555555556677777777766 66544322 244566 77777777754 455555
Q ss_pred HHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHH
Q 012001 244 LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 244 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
+......+++|+.|+++++..+++..... +..+++|++|++++|....+.....+.++++|+.|++++| +++..+..+
T Consensus 214 l~~~~~~~~~L~~L~l~~~~~l~~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~~~~~~l 291 (336)
T 2ast_B 214 LSTLVRRCPNLVHLDLSDSVMLKNDCFQE-FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPDGTLQLL 291 (336)
T ss_dssp HHHHHHHCTTCSEEECTTCTTCCGGGGGG-GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCTTCHHHH
T ss_pred HHHHHhhCCCCCEEeCCCCCcCCHHHHHH-HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCHHHHHHH
Confidence 54454458888888888877555444333 3567889999998886555555566788999999999998 888778777
Q ss_pred HhhCCCCCeEecCCCCCCC
Q 012001 324 GNWHGSLKELSLSKCSGVT 342 (473)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~ 342 (473)
...+++ |++++ +.++
T Consensus 292 ~~~l~~---L~l~~-n~l~ 306 (336)
T 2ast_B 292 KEALPH---LQINC-SHFT 306 (336)
T ss_dssp HHHSTT---SEESC-CCSC
T ss_pred HhhCcc---eEEec-ccCc
Confidence 644454 44654 4544
No 8
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=7.3e-28 Score=236.81 Aligned_cols=256 Identities=16% Similarity=0.145 Sum_probs=125.2
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCcc--------------
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-------------- 265 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-------------- 265 (473)
.+++|++|+++++.++ .....+..+++|++|+++++ .+.......+.. +++|++|+++++...
T Consensus 276 ~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~~~~~~~~~~~~~l~~L 352 (606)
T 3t6q_A 276 CFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN-KFENLCQISASN-FPSLTHLSIKGNTKRLELGTGCLENLENL 352 (606)
T ss_dssp TCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTC-CCSBGGGGCGGG-CTTCSEEECCSCSSCCBCCSSTTTTCTTC
T ss_pred cccCCCEEeccCCccC-CCChhhcccccCCEEECccC-CcCcCchhhhhc-cCcCCEEECCCCCcccccchhhhhccCcC
Confidence 4566666666666554 23334455566666666653 233222222222 555555555544321
Q ss_pred -----------chHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 266 -----------SHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 266 -----------~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
........+..+++|++|+++++. +....+..+..+++|+.|++++|.+...........+++|+.|+
T Consensus 353 ~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ 431 (606)
T 3t6q_A 353 RELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNE-PLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431 (606)
T ss_dssp CEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCS-CEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEE
T ss_pred CEEECCCCccccccCcchhcccCCCCCEEECCCCc-CCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEE
Confidence 110001112334445555554442 22223334445555555555555543322222112455666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHH--HHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASI--NSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
+++| .++.. .+..+..+++|++|+++++. ++...+ ......+++|+.|++++|. ++......+. .+++|+.|+
T Consensus 432 l~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~ 506 (606)
T 3t6q_A 432 LSHS-LLDIS-SEQLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLSFCD-LSSIDQHAFT-SLKMMNHVD 506 (606)
T ss_dssp CTTC-CCBTT-CTTTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEE
T ss_pred CCCC-ccCCc-CHHHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECCCCc-cCccChhhhc-cccCCCEEE
Confidence 6653 22211 12223455666666666654 322111 0112346667777776653 3322222222 566777777
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+++|.+++..+..+..+++| .|++++| .++... +.....+++|++|++++|+
T Consensus 507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 558 (606)
T 3t6q_A 507 LSHNRLTSSSIEALSHLKGI-YLNLASN-HISIIL-PSLLPILSQQRTINLRQNP 558 (606)
T ss_dssp CCSSCCCGGGGGGGTTCCSC-EEECCSS-CCCCCC-GGGHHHHHTSSEEECTTCC
T ss_pred CCCCccCcCChhHhCccccc-EEECcCC-cccccC-HhhcccCCCCCEEeCCCCC
Confidence 77777776666666667777 7777777 665322 2222356777777777765
No 9
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=6.8e-28 Score=242.16 Aligned_cols=255 Identities=19% Similarity=0.138 Sum_probs=150.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++|++|++++|.+++.....+.++++|+.|+++++. +.......+.. +++|+.|+++++..... +...+..+++|
T Consensus 393 ~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~-l~~L~~L~L~~n~l~~~--~p~~~~~l~~L 468 (768)
T 3rgz_A 393 KNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNY-LSGTIPSSLGS-LSKLRDLKLWLNMLEGE--IPQELMYVKTL 468 (768)
T ss_dssp TCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSE-EESCCCGGGGG-CTTCCEEECCSSCCCSC--CCGGGGGCTTC
T ss_pred cCCccEEECCCCccccccCHHHhcCCCCCEEECcCCc-ccCcccHHHhc-CCCCCEEECCCCcccCc--CCHHHcCCCCc
Confidence 3455555555555544444455566666666666642 22111222333 66677777766553211 11123456677
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
++|+++++. +....+..+..+++|+.|++++|.+.+..+..+. .+++|+.|++++| .+... ++..+..+++|+.|+
T Consensus 469 ~~L~L~~N~-l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N-~l~~~-~p~~l~~l~~L~~L~ 544 (768)
T 3rgz_A 469 ETLILDFND-LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIG-RLENLAILKLSNN-SFSGN-IPAELGDCRSLIWLD 544 (768)
T ss_dssp CEEECCSSC-CCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGG-GCTTCCEEECCSS-CCEEE-CCGGGGGCTTCCEEE
T ss_pred eEEEecCCc-ccCcCCHHHhcCCCCCEEEccCCccCCcCChHHh-cCCCCCEEECCCC-cccCc-CCHHHcCCCCCCEEE
Confidence 777777663 3334555667777777777777776655444444 5677777777774 33211 233355677777777
Q ss_pred cCCCCCCCHHHHH-------------------------------------------------------------------
Q 012001 361 ITCCRKITYASIN------------------------------------------------------------------- 373 (473)
Q Consensus 361 l~~~~~~~~~~~~------------------------------------------------------------------- 373 (473)
+++|.........
T Consensus 545 Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~ 624 (768)
T 3rgz_A 545 LNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624 (768)
T ss_dssp CCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEEC
T ss_pred CCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccC
Confidence 7765311000000
Q ss_pred -HHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHH
Q 012001 374 -SITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 374 -~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
.....+++|+.|+++++. ++......+. .+++|+.|++++|.++...+..++.+++|+.|++++| +++. .++...
T Consensus 625 ~~~~~~l~~L~~LdLs~N~-l~g~ip~~l~-~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N-~l~g-~ip~~l 700 (768)
T 3rgz_A 625 SPTFDNNGSMMFLDMSYNM-LSGYIPKEIG-SMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSN-KLDG-RIPQAM 700 (768)
T ss_dssp CCSCSSSBCCCEEECCSSC-CBSCCCGGGG-GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS-CCEE-CCCGGG
T ss_pred chhhhccccccEEECcCCc-ccccCCHHHh-ccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCC-cccC-cCChHH
Confidence 001124667788887754 4322222233 7888888888888888777778888888888888888 7764 244445
Q ss_pred hcCccCCeeecCCCC
Q 012001 453 STCSMLKELDLYRFV 467 (473)
Q Consensus 453 ~~~~~L~~L~l~~c~ 467 (473)
..+++|++|++++|+
T Consensus 701 ~~l~~L~~L~ls~N~ 715 (768)
T 3rgz_A 701 SALTMLTEIDLSNNN 715 (768)
T ss_dssp GGCCCCSEEECCSSE
T ss_pred hCCCCCCEEECcCCc
Confidence 578888888888874
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.93 E-value=2.1e-27 Score=233.60 Aligned_cols=252 Identities=15% Similarity=0.080 Sum_probs=130.3
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|+.|+++++.+.+.....+..+++|++|+++++. +...+ ..+.. +++|++|+++++...... ...+..+++|++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~lp-~~l~~-l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~ 329 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATH-LSELP-SGLVG-LSTLKKLVLSANKFENLC--QISASNFPSLTH 329 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSC-CSCCC-SSCCS-CTTCCEEECTTCCCSBGG--GGCGGGCTTCSE
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCc-cCCCC-hhhcc-cccCCEEECccCCcCcCc--hhhhhccCcCCE
Confidence 45555666665554444456778999999999853 44221 12333 799999999988743221 122456788888
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhH--HHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
|+++++..........+..+++|+.|++++|.+.... ...+. .+++|++|+++++ .+... .+..+..+++|++|+
T Consensus 330 L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~ 406 (606)
T 3t6q_A 330 LSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLR-NLSHLQSLNLSYN-EPLSL-KTEAFKECPQLELLD 406 (606)
T ss_dssp EECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTT-TCTTCCEEECCSC-SCEEE-CTTTTTTCTTCSEEE
T ss_pred EECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcc-cCCCCCEEECCCC-cCCcC-CHHHhcCCccCCeEE
Confidence 8888774332222334556667777777776655432 22222 4556666666553 22111 111223344455555
Q ss_pred cCCCCC------------------------CCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHH--HHHhcCccCCeeeec
Q 012001 361 ITCCRK------------------------ITYASINSITKTCTSLTSLRMECCKLVSWEAFV--LIGQQCQYLEELDIT 414 (473)
Q Consensus 361 l~~~~~------------------------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~--~~~~~~~~L~~L~l~ 414 (473)
++++.. ++.... .....+++|+.|++++|. +++..+. .....+++|+.|+++
T Consensus 407 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~l~~L~~L~Ls 484 (606)
T 3t6q_A 407 LAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSE-QLFDGLPALQHLNLQGNH-FPKGNIQKTNSLQTLGRLEILVLS 484 (606)
T ss_dssp CTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCT-TTTTTCTTCCEEECTTCB-CGGGEECSSCGGGGCTTCCEEECT
T ss_pred CCCCcCCCcccchhhhCcccCCEEECCCCccCCcCH-HHHhCCCCCCEEECCCCC-CCccccccchhhccCCCccEEECC
Confidence 544331 221111 111234555555555543 2221110 111245566666666
Q ss_pred ccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 415 ENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|.+++.....+..+++|+.|++++| .++...... ...+++| +|++++|.
T Consensus 485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~-l~~l~~L-~L~L~~N~ 534 (606)
T 3t6q_A 485 FCDLSSIDQHAFTSLKMMNHVDLSHN-RLTSSSIEA-LSHLKGI-YLNLASNH 534 (606)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECCSS-CCCGGGGGG-GTTCCSC-EEECCSSC
T ss_pred CCccCccChhhhccccCCCEEECCCC-ccCcCChhH-hCccccc-EEECcCCc
Confidence 66555555455555666666666666 555432222 2255566 66666553
No 11
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.93 E-value=5e-28 Score=243.14 Aligned_cols=254 Identities=20% Similarity=0.160 Sum_probs=157.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCc-c
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD-Y 279 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~ 279 (473)
+++|++|++++|.+.+.....+.++++|++|+++++...+......+.. +++|++|+++++...... ...+..++ +
T Consensus 293 ~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~-l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~ 369 (768)
T 3rgz_A 293 CDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK-MRGLKVLDLSFNEFSGEL--PESLTNLSAS 369 (768)
T ss_dssp CTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTT-CTTCCEEECCSSEEEECC--CTTHHHHTTT
T ss_pred cCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhc-CCCCCEEeCcCCccCccc--cHHHHhhhcC
Confidence 3566666666665555555555666666666666643211222222333 666777777665421110 00111223 6
Q ss_pred cceeeccccccCchhHHHhhhC--CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHN--FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~--~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
|+.|+++++. +....+..+.. +++|+.|++++|.+.+..+..+. .+++|+.|+++++ .++.. ++..+..+++|+
T Consensus 370 L~~L~Ls~N~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~Ls~N-~l~~~-~p~~l~~l~~L~ 445 (768)
T 3rgz_A 370 LLTLDLSSNN-FSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS-NCSELVSLHLSFN-YLSGT-IPSSLGSLSKLR 445 (768)
T ss_dssp CSEEECCSSE-EEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG-GCTTCCEEECCSS-EEESC-CCGGGGGCTTCC
T ss_pred CcEEEccCCC-cCCCcChhhhhcccCCccEEECCCCccccccCHHHh-cCCCCCEEECcCC-cccCc-ccHHHhcCCCCC
Confidence 7777776653 22233333333 66788888888876655444444 6788889988874 33211 233356778899
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|++++|. ++.. +......+++|+.|++++|. ++......+ ..+++|+.|++++|.+++..+..++.+++|+.|++
T Consensus 446 ~L~L~~n~-l~~~-~p~~~~~l~~L~~L~L~~N~-l~~~~p~~l-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 521 (768)
T 3rgz_A 446 DLKLWLNM-LEGE-IPQELMYVKTLETLILDFND-LTGEIPSGL-SNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKL 521 (768)
T ss_dssp EEECCSSC-CCSC-CCGGGGGCTTCCEEECCSSC-CCSCCCGGG-GGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEEC
T ss_pred EEECCCCc-ccCc-CCHHHcCCCCceEEEecCCc-ccCcCCHHH-hcCCCCCEEEccCCccCCcCChHHhcCCCCCEEEC
Confidence 99998876 3321 11222468899999998865 442222223 37899999999999988877778888999999999
Q ss_pred CCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 438 GICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++| .++. .++.....+++|++|++++|+
T Consensus 522 ~~N-~l~~-~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 522 SNN-SFSG-NIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CSS-CCEE-ECCGGGGGCTTCCEEECCSSE
T ss_pred CCC-cccC-cCCHHHcCCCCCCEEECCCCc
Confidence 999 7764 234445588999999999885
No 12
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.92 E-value=2.6e-24 Score=196.34 Aligned_cols=237 Identities=20% Similarity=0.196 Sum_probs=134.0
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|+++++.+.+ +..+..+++|+.|++++|....... .+.. +++|++|+++++....... +..+++
T Consensus 108 ~l~~L~~L~l~~n~i~~--~~~~~~l~~L~~L~l~~n~~~~~~~--~~~~-l~~L~~L~l~~~~~~~~~~----~~~l~~ 178 (347)
T 4fmz_A 108 NLTNLRELYLNEDNISD--ISPLANLTKMYSLNLGANHNLSDLS--PLSN-MTGLNYLTVTESKVKDVTP----IANLTD 178 (347)
T ss_dssp TCTTCSEEECTTSCCCC--CGGGTTCTTCCEEECTTCTTCCCCG--GGTT-CTTCCEEECCSSCCCCCGG----GGGCTT
T ss_pred CCCcCCEEECcCCcccC--chhhccCCceeEEECCCCCCccccc--chhh-CCCCcEEEecCCCcCCchh----hccCCC
Confidence 44555555555554432 2224455555555555543333211 1222 5556666655554222211 344566
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++... .. ..+..+++|+.|++.++.+.+... + ..+++|++|++++| .+++.. . +..+++|++|
T Consensus 179 L~~L~l~~n~l~-~~--~~~~~l~~L~~L~l~~n~l~~~~~--~-~~~~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L 248 (347)
T 4fmz_A 179 LYSLSLNYNQIE-DI--SPLASLTSLHYFTAYVNQITDITP--V-ANMTRLNSLKIGNN-KITDLS--P-LANLSQLTWL 248 (347)
T ss_dssp CSEEECTTSCCC-CC--GGGGGCTTCCEEECCSSCCCCCGG--G-GGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEE
T ss_pred CCEEEccCCccc-cc--ccccCCCccceeecccCCCCCCch--h-hcCCcCCEEEccCC-ccCCCc--c-hhcCCCCCEE
Confidence 666666655321 11 115566667777777666554332 2 25667777777764 333211 1 4566777777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
++++|. ++.. . ....+++|+.|++++|. +++. .. ...+++|+.|++++|.+++.....+..+++|+.|++++
T Consensus 249 ~l~~n~-l~~~--~-~~~~l~~L~~L~l~~n~-l~~~--~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~ 320 (347)
T 4fmz_A 249 EIGTNQ-ISDI--N-AVKDLTKLKMLNVGSNQ-ISDI--SV-LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQ 320 (347)
T ss_dssp ECCSSC-CCCC--G-GGTTCTTCCEEECCSSC-CCCC--GG-GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCS
T ss_pred ECCCCc-cCCC--h-hHhcCCCcCEEEccCCc-cCCC--hh-hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccC
Confidence 777664 4332 1 12457778888887764 4332 22 23778888888888888777777777788888888888
Q ss_pred CCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 440 CSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
| .++.. .. ...+++|++|++++|+
T Consensus 321 n-~l~~~--~~-~~~l~~L~~L~l~~N~ 344 (347)
T 4fmz_A 321 N-HITDI--RP-LASLSKMDSADFANQV 344 (347)
T ss_dssp S-SCCCC--GG-GGGCTTCSEESSSCC-
T ss_pred C-ccccc--cC-hhhhhccceeehhhhc
Confidence 8 66642 22 4478888888888775
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=5.4e-26 Score=220.90 Aligned_cols=182 Identities=14% Similarity=0.097 Sum_probs=119.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++. +...... ....+++|++|+++++. +.......+ ..+++|++|+++++ .+...+...++.++
T Consensus 26 ~~L~~L~Ls~n~-l~~~~~~---~~~~l~~L~~L~Ls~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 26 AAMKSLDLSFNK-ITYIGHG---DLRACANLQVLILKSSR-INTIEGDAF-YSLGSLEHLDLSDN-HLSSLSSSWFGPLS 98 (549)
T ss_dssp TTCCEEECCSSC-CCEECSS---TTSSCTTCCEEECTTSC-CCEECTTTT-TTCTTCCEEECTTS-CCCSCCHHHHTTCT
T ss_pred CCccEEECcCCc-cCccChh---hhhcCCcccEEECCCCC-cCccChhhc-cccccCCEEECCCC-ccCccCHHHhccCC
Confidence 689999999874 3322111 23667899999999875 332222223 37899999999988 46665556788999
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+|++|+++++. +...+.......+++|++|+++++..++..+... ...+++|++|+++++.+.......+..+++|++
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~ 176 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRID-FAGLTSLNELEIKALSLRNYQSQSLKSIRDIHH 176 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTT-TTTCCEEEEEEEEETTCCEECTTTTTTCSEEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhh-hhcccccCeeeccCCcccccChhhhhccccCce
Confidence 99999999875 3321111123348899999998875444332212 236889999999999887766677777778888
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (473)
|+++++. ...... .+...+++|+.|+++++.
T Consensus 177 L~l~~n~-~~~~~~-~~~~~l~~L~~L~L~~n~ 207 (549)
T 2z81_A 177 LTLHLSE-SAFLLE-IFADILSSVRYLELRDTN 207 (549)
T ss_dssp EEEECSB-STTHHH-HHHHSTTTBSEEEEESCB
T ss_pred EecccCc-ccccch-hhHhhcccccEEEccCCc
Confidence 8877643 332222 222336677777776554
No 14
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.91 E-value=1.4e-23 Score=191.41 Aligned_cols=217 Identities=17% Similarity=0.160 Sum_probs=137.3
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|+.|++++|... ..+..+..+++|++|+++++....... +.. +++|+.|+++++....... +..+++
T Consensus 130 ~l~~L~~L~l~~n~~~-~~~~~~~~l~~L~~L~l~~~~~~~~~~---~~~-l~~L~~L~l~~n~l~~~~~----~~~l~~ 200 (347)
T 4fmz_A 130 NLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTVTESKVKDVTP---IAN-LTDLYSLSLNYNQIEDISP----LASLTS 200 (347)
T ss_dssp TCTTCCEEECTTCTTC-CCCGGGTTCTTCCEEECCSSCCCCCGG---GGG-CTTCSEEECTTSCCCCCGG----GGGCTT
T ss_pred cCCceeEEECCCCCCc-ccccchhhCCCCcEEEecCCCcCCchh---hcc-CCCCCEEEccCCccccccc----ccCCCc
Confidence 4555666666555322 123335556666666666543221111 222 6666666666654322211 445667
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|+.|+++++.... ... +..+++|+.|++++|.+.+... + ..+++|++|+++++ .+++. ..+..+++|++|
T Consensus 201 L~~L~l~~n~l~~-~~~--~~~~~~L~~L~l~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L 270 (347)
T 4fmz_A 201 LHYFTAYVNQITD-ITP--VANMTRLNSLKIGNNKITDLSP--L-ANLSQLTWLEIGTN-QISDI---NAVKDLTKLKML 270 (347)
T ss_dssp CCEEECCSSCCCC-CGG--GGGCTTCCEEECCSSCCCCCGG--G-TTCTTCCEEECCSS-CCCCC---GGGTTCTTCCEE
T ss_pred cceeecccCCCCC-Cch--hhcCCcCCEEEccCCccCCCcc--h-hcCCCCCEEECCCC-ccCCC---hhHhcCCCcCEE
Confidence 7777776653221 111 5677788888888887665433 2 36788888888874 44432 235567899999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
++++|. +++. . ....+++|+.|++++|. ++......+. .+++|+.|++++|.+++... +..+++|+.|++++
T Consensus 271 ~l~~n~-l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~ 342 (347)
T 4fmz_A 271 NVGSNQ-ISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFAN 342 (347)
T ss_dssp ECCSSC-CCCC--G-GGGGCTTCSEEECCSSC-CCGGGHHHHH-TCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSC
T ss_pred EccCCc-cCCC--h-hhcCCCCCCEEECcCCc-CCCcChhHhh-ccccCCEEEccCCccccccC--hhhhhccceeehhh
Confidence 998875 5543 2 23578999999999975 6666666565 89999999999999888654 77899999999999
Q ss_pred CCCcc
Q 012001 440 CSNIT 444 (473)
Q Consensus 440 ~~~l~ 444 (473)
| .++
T Consensus 343 N-~i~ 346 (347)
T 4fmz_A 343 Q-VIK 346 (347)
T ss_dssp C----
T ss_pred h-ccc
Confidence 9 554
No 15
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.91 E-value=1e-23 Score=199.84 Aligned_cols=341 Identities=19% Similarity=0.193 Sum_probs=204.3
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|++.++.... ++....+++|++|+++++.- .... . ...+++|++|+++++. +.+... +..++
T Consensus 46 ~~l~~L~l~~~~i~~------l~~~~~l~~L~~L~Ls~n~l-~~~~--~-~~~l~~L~~L~l~~n~-l~~~~~--~~~l~ 112 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS------IDGVEYLNNLTQINFSNNQL-TDIT--P-LKNLTKLVDILMNNNQ-IADITP--LANLT 112 (466)
T ss_dssp HTCCEEECCSSCCCC------CTTGGGCTTCCEEECCSSCC-CCCG--G-GTTCTTCCEEECCSSC-CCCCGG--GTTCT
T ss_pred ccccEEecCCCCCcc------CcchhhhcCCCEEECCCCcc-CCch--h-hhccccCCEEECCCCc-cccChh--hcCCC
Confidence 466777776653211 11224467777777777642 2211 1 3367777888777763 433321 66777
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+|++|++.++. +.... . ...+++|++|+++++. +...+ . ...+++|+.|++.+. +. ....+.++++|++
T Consensus 113 ~L~~L~L~~n~-l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~~-~~--~~~~~~~l~~L~~ 181 (466)
T 1o6v_A 113 NLTGLTLFNNQ-ITDID--P-LKNLTNLNRLELSSNT-ISDIS--A-LSGLTSLQQLSFGNQ-VT--DLKPLANLTTLER 181 (466)
T ss_dssp TCCEEECCSSC-CCCCG--G-GTTCTTCSEEEEEEEE-ECCCG--G-GTTCTTCSEEEEEES-CC--CCGGGTTCTTCCE
T ss_pred CCCEEECCCCC-CCCCh--H-HcCCCCCCEEECCCCc-cCCCh--h-hccCCcccEeecCCc-cc--CchhhccCCCCCE
Confidence 78888777764 33222 1 2347777887777653 22221 1 346777777777542 22 2334667777888
Q ss_pred eeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEe
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKF 310 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l 310 (473)
|+++++. +... ..+.. +++|++|+++++....... +..+++|+.|+++++.... ...+..+++|+.|++
T Consensus 182 L~l~~n~-l~~~--~~l~~-l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l~~---~~~l~~l~~L~~L~l 250 (466)
T 1o6v_A 182 LDISSNK-VSDI--SVLAK-LTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDL 250 (466)
T ss_dssp EECCSSC-CCCC--GGGGG-CTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC---CGGGGGCTTCSEEEC
T ss_pred EECcCCc-CCCC--hhhcc-CCCCCEEEecCCccccccc----ccccCCCCEEECCCCCccc---chhhhcCCCCCEEEC
Confidence 8777753 3322 12333 7778888877765332222 3456778888877764222 134667778888888
Q ss_pred cCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCC
Q 012001 311 EDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECC 390 (473)
Q Consensus 311 ~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 390 (473)
++|.+..... + ..+++|++|+++++ .++.. .. +..+++|+.|++++|. ++.... ...+++|+.|++++|
T Consensus 251 ~~n~l~~~~~--~-~~l~~L~~L~l~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~L~~n 319 (466)
T 1o6v_A 251 ANNQISNLAP--L-SGLTKLTELKLGAN-QISNI--SP-LAGLTALTNLELNENQ-LEDISP---ISNLKNLTYLTLYFN 319 (466)
T ss_dssp CSSCCCCCGG--G-TTCTTCSEEECCSS-CCCCC--GG-GTTCTTCSEEECCSSC-CSCCGG---GGGCTTCSEEECCSS
T ss_pred CCCccccchh--h-hcCCCCCEEECCCC-ccCcc--cc-ccCCCccCeEEcCCCc-ccCchh---hcCCCCCCEEECcCC
Confidence 8877654433 2 26777888888774 34321 11 4567788888887765 332211 346788888888876
Q ss_pred CCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 391 KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 391 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. +++... + ..+++|+.|++++|.+++. ..++.+++|+.|++++| .+++.. . ...+++|++|++++|+
T Consensus 320 ~-l~~~~~--~-~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 320 N-ISDISP--V-SSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHN-QISDLT--P-LANLTRITQLGLNDQA 386 (466)
T ss_dssp C-CSCCGG--G-GGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSS-CCCBCG--G-GTTCTTCCEEECCCEE
T ss_pred c-CCCchh--h-ccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCC-ccCccc--h-hhcCCCCCEEeccCCc
Confidence 5 333221 2 3778888888888777764 35667788888888888 666432 2 4477888888887764
No 16
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.91 E-value=9.7e-27 Score=228.82 Aligned_cols=208 Identities=17% Similarity=0.112 Sum_probs=126.0
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++...........+..+++|++|+++++.. . ..+..+..+++|+.|++++|.+...........+++|
T Consensus 349 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l-~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L 426 (606)
T 3vq2_A 349 LPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA-I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKL 426 (606)
T ss_dssp CTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSE-E-EECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTC
T ss_pred CCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcc-c-cchhhccCCCCCCeeECCCCccCCccChhhhhccccC
Confidence 4555555555544221111122345566777777766532 1 1234556677777777777765544331122266788
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++| .+... .+..+..+++|++|++++|. +++.........+++|+.|++++|. ++......+. .+++|++
T Consensus 427 ~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~ 501 (606)
T 3vq2_A 427 LYLDISYT-NTKID-FDGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQ-LEQISWGVFD-TLHRLQL 501 (606)
T ss_dssp CEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCE
T ss_pred CEEECcCC-CCCcc-chhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCc-CCccChhhhc-ccccCCE
Confidence 88888774 33221 22234567888888888765 4332122223467888888888864 4433222232 7788888
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCc-cCCeeecCCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCS-MLKELDLYRFVT 468 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~-~L~~L~l~~c~~ 468 (473)
|++++|.+++..+..+..+++|+.|++++| +++. ++.....++ +|++|++++|+-
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~~--~p~~~~~l~~~L~~l~l~~N~~ 557 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFN-RIET--SKGILQHFPKSLAFFNLTNNSV 557 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTS-CCCC--EESCGGGSCTTCCEEECCSCCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCC-cCcc--cCHhHhhhcccCcEEEccCCCc
Confidence 888888888877777778888888888888 7773 333344665 588888888763
No 17
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.90 E-value=6.3e-26 Score=215.09 Aligned_cols=355 Identities=14% Similarity=0.118 Sum_probs=211.9
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++. +...... ....+++|++|+++++....... ...+..+++|++|+++++. +.......+.+++
T Consensus 30 ~~l~~L~Ls~n~-i~~~~~~---~~~~l~~L~~L~L~~n~~~~~i~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~ 103 (455)
T 3v47_A 30 AHVNYVDLSLNS-IAELNET---SFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYNQ-FLQLETGAFNGLA 103 (455)
T ss_dssp TTCCEEECCSSC-CCEECTT---TTSSCTTCCEEECCCCSTTCEEC-TTTTTTCTTCCEEECTTCT-TCEECTTTTTTCT
T ss_pred CccCEEEecCCc-cCcCChh---HhccCccccEEECcCCcccceEC-cccccccccCCEEeCCCCc-cCccChhhccCcc
Confidence 578899988764 2222111 23567888999988774211111 1223368889999998874 4444345677888
Q ss_pred CCCEEecccCcccCHHHHHH-HHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccC--cc
Q 012001 151 NLERLWLARCKLITDLGIGR-IAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--QY 227 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~~ 227 (473)
+|++|++.++. +....+.. ....+++|++|+++++. +.......+...+++|++|++++|.+.......+..+ ++
T Consensus 104 ~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~ 181 (455)
T 3v47_A 104 NLEVLTLTQCN-LDGAVLSGNFFKPLTSLEMLVLRDNN-IKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKH 181 (455)
T ss_dssp TCCEEECTTSC-CBTHHHHSSTTTTCTTCCEEECCSSB-CCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCE
T ss_pred cCCEEeCCCCC-CCccccCcccccCcccCCEEECCCCc-cCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccc
Confidence 89999988875 33322221 23347888888888764 3332222223477888899888887776655555543 67
Q ss_pred cCeeeccCCCCCChHH--------HHHHHhcCCCCcEEecCCCCccchHHHHHHHh--cCcccceeeccccccCchhH--
Q 012001 228 LEDLVLEGCHGIDDDG--------LASVEYSCKSLKALNLSKCQNISHVGLSSLIK--GADYLQQLILAYSFWVSADL-- 295 (473)
Q Consensus 228 L~~L~l~~~~~~~~~~--------~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~-- 295 (473)
|+.++++++.. .... ...+.. +++|++|+++++. +.......+.. ..++|+.|+++++.......
T Consensus 182 L~~L~l~~n~l-~~~~~~~~~~~~~~~~~~-~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 258 (455)
T 3v47_A 182 FTLLRLSSITL-QDMNEYWLGWEKCGNPFK-NTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258 (455)
T ss_dssp EEEEECTTCBC-TTCSTTCTTHHHHCCTTT-TCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTC
T ss_pred ccccccccCcc-cccchhhccccccccccc-cceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccch
Confidence 88888877532 2111 011112 4788888888876 33322222222 24788888887663222100
Q ss_pred -------HHhhh--CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCC
Q 012001 296 -------SKCLH--NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRK 366 (473)
Q Consensus 296 -------~~~l~--~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 366 (473)
...+. ..++|+.|++++|.+.......+. .+++|++|+++++ .+++. .+..+..+++|++|++++|.
T Consensus 259 ~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~~L~Ls~N~- 334 (455)
T 3v47_A 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFS-HFTDLEQLTLAQN-EINKI-DDNAFWGLTHLLKLNLSQNF- 334 (455)
T ss_dssp CSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTT-TCTTCCEEECTTS-CCCEE-CTTTTTTCTTCCEEECCSSC-
T ss_pred hhhccCcccccccccccCceEEEecCccccccchhhcc-cCCCCCEEECCCC-ccccc-ChhHhcCcccCCEEECCCCc-
Confidence 00111 235788888888877655444443 6778888888774 44432 12234566788888887764
Q ss_pred CCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 367 ITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 367 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
++...... ...+++|+.|++++|. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++
T Consensus 335 l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l~ 408 (455)
T 3v47_A 335 LGSIDSRM-FENLDKLEVLDLSYNH-IRALGDQSFL-GLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 408 (455)
T ss_dssp CCEECGGG-GTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred cCCcChhH-hcCcccCCEEECCCCc-ccccChhhcc-ccccccEEECCCCccccCCHhHhccCCcccEEEccCC-Ccc
Confidence 43322212 2457788888887754 4433222233 6778888888888777766555667788888888877 443
No 18
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.90 E-value=1.2e-24 Score=209.71 Aligned_cols=366 Identities=16% Similarity=0.104 Sum_probs=216.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
+++++|+++++.. ....... ...+++|++|+++++. +...... .+..+++|++|+++++ .+...+.. .++
T Consensus 21 ~~L~~L~Ls~n~i-~~~~~~~---~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~Ls~N-~l~~lp~~---~l~ 90 (520)
T 2z7x_B 21 QKTTILNISQNYI-SELWTSD---ILSLSKLRILIISHNR-IQYLDIS-VFKFNQELEYLDLSHN-KLVKISCH---PTV 90 (520)
T ss_dssp TTCSEEECCSSCC-CCCCHHH---HTTCTTCCEEECCSSC-CCEEEGG-GGTTCTTCCEEECCSS-CCCEEECC---CCC
T ss_pred ccccEEECCCCcc-cccChhh---ccccccccEEecCCCc-cCCcChH-HhhcccCCCEEecCCC-ceeecCcc---ccC
Confidence 6899999998752 2222222 2557899999998875 3322222 2347899999999988 45543322 789
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC--cEEeeccccC--CCCcccccc---
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (473)
+|++|+++++. +....+......+++|++|+++++. +.... ...+++| +.|++++|.+ ....+..+.
T Consensus 91 ~L~~L~L~~N~-l~~~~~p~~~~~l~~L~~L~L~~n~-l~~~~----~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~ 164 (520)
T 2z7x_B 91 NLKHLDLSFNA-FDALPICKEFGNMSQLKFLGLSTTH-LEKSS----VLPIAHLNISKVLLVLGETYGEKEDPEGLQDFN 164 (520)
T ss_dssp CCSEEECCSSC-CSSCCCCGGGGGCTTCCEEEEEESS-CCGGG----GGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCC
T ss_pred CccEEeccCCc-cccccchhhhccCCcceEEEecCcc-cchhh----ccccccceeeEEEeecccccccccccccccccc
Confidence 99999999875 3321121122348999999999864 44422 2366777 9999998876 333322222
Q ss_pred -----------------------cCcccCeeeccCCCC---CC--hHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHh
Q 012001 224 -----------------------KLQYLEDLVLEGCHG---ID--DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~---~~--~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 275 (473)
.+++|+.++++++.. .. ...+..+.. +++|+.|++.++. +....+..+..
T Consensus 165 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~-l~~L~~L~l~~~~-l~~~~~~~~~~ 242 (520)
T 2z7x_B 165 TESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQT-NPKLSNLTLNNIE-TTWNSFIRILQ 242 (520)
T ss_dssp EEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGG-CTTCCEEEEEEEE-EEHHHHHHHHH
T ss_pred cceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhcc-ccchhhccccccc-cCHHHHHHHHH
Confidence 356667777666320 00 011112222 5566666655443 22221111111
Q ss_pred --cCcccceeeccccccC---ch---------------------------hHHHh----------------------hhC
Q 012001 276 --GADYLQQLILAYSFWV---SA---------------------------DLSKC----------------------LHN 301 (473)
Q Consensus 276 --~~~~L~~L~l~~~~~~---~~---------------------------~~~~~----------------------l~~ 301 (473)
..++|++|+++++... .. ..... ...
T Consensus 243 ~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~ 322 (520)
T 2z7x_B 243 LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322 (520)
T ss_dssp HHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSS
T ss_pred HhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhh
Confidence 1234444444433210 00 00000 146
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCCh-HHHHHHHHhCCCCcEEecCCCCCCCH-HHHHHHHhcC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTD-EELSFVVQSHKELRKLDITCCRKITY-ASINSITKTC 379 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~ 379 (473)
+++|+.|++++|.+.+..+..+. .+++|+.|+++++ .++. ..++..+..+++|++|+++++. ++. ... .....+
T Consensus 323 l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~l~~~~~~~~~l~~L~~L~Ls~N~-l~~~l~~-~~~~~l 398 (520)
T 2z7x_B 323 ISPFLHLDFSNNLLTDTVFENCG-HLTELETLILQMN-QLKELSKIAEMTTQMKSLQQLDISQNS-VSYDEKK-GDCSWT 398 (520)
T ss_dssp CCCCCEEECCSSCCCTTTTTTCC-CCSSCCEEECCSS-CCCBHHHHHHHHTTCTTCCEEECCSSC-CBCCGGG-CSCCCC
T ss_pred CCcccEEEeECCccChhhhhhhc-cCCCCCEEEccCC-ccCccccchHHHhhCCCCCEEECCCCc-CCccccc-chhccC
Confidence 67888888888877764444443 6778888888874 4553 2345566777888888888765 332 211 112346
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHH-HHhcCcc
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKH-VGSTCSM 457 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~-~~~~~~~ 457 (473)
++|+.|++++|. ++..... .+ ++|+.|++++|.++.. ...+..+++|+.|++++| +++. ++. ....+++
T Consensus 399 ~~L~~L~Ls~N~-l~~~~~~----~l~~~L~~L~Ls~N~l~~i-p~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~ 469 (520)
T 2z7x_B 399 KSLLSLNMSSNI-LTDTIFR----CLPPRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASN-QLKS--VPDGIFDRLTS 469 (520)
T ss_dssp TTCCEEECCSSC-CCGGGGG----SCCTTCCEEECCSSCCCCC-CGGGGGCTTCCEEECCSS-CCCC--CCTTTTTTCTT
T ss_pred ccCCEEECcCCC-CCcchhh----hhcccCCEEECCCCccccc-chhhhcCCCCCEEECCCC-cCCc--cCHHHhccCCc
Confidence 788888888855 4433222 23 6888888888888743 344557888999999988 7774 332 2457888
Q ss_pred CCeeecCCCC
Q 012001 458 LKELDLYRFV 467 (473)
Q Consensus 458 L~~L~l~~c~ 467 (473)
|++|++++|+
T Consensus 470 L~~L~l~~N~ 479 (520)
T 2z7x_B 470 LQKIWLHTNP 479 (520)
T ss_dssp CCEEECCSSC
T ss_pred ccEEECcCCC
Confidence 9999988876
No 19
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.90 E-value=1.4e-22 Score=192.12 Aligned_cols=326 Identities=21% Similarity=0.176 Sum_probs=240.3
Q ss_pred hccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHH
Q 012001 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (473)
Q Consensus 67 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (473)
+..+++|++|+++++.. .+.. ....+++|++|+++++.-..... ...+++|++|+++++ .+.+.+ .+
T Consensus 64 ~~~l~~L~~L~Ls~n~l-~~~~-----~~~~l~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~--~~ 130 (466)
T 1o6v_A 64 VEYLNNLTQINFSNNQL-TDIT-----PLKNLTKLVDILMNNNQIADITP----LANLTNLTGLTLFNN-QITDID--PL 130 (466)
T ss_dssp GGGCTTCCEEECCSSCC-CCCG-----GGTTCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSS-CCCCCG--GG
T ss_pred hhhhcCCCEEECCCCcc-CCch-----hhhccccCCEEECCCCccccChh----hcCCCCCCEEECCCC-CCCCCh--HH
Confidence 67789999999998753 2211 23667999999999875322222 448999999999998 455543 37
Q ss_pred HcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCc
Q 012001 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (473)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (473)
..+++|++|++.++. +.... . ...+++|+.|++.+. +.... . ...+++|+.|+++++.+.+ +..+..++
T Consensus 131 ~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~~--~~~~~--~-~~~l~~L~~L~l~~n~l~~--~~~l~~l~ 199 (466)
T 1o6v_A 131 KNLTNLNRLELSSNT-ISDIS--A-LSGLTSLQQLSFGNQ--VTDLK--P-LANLTTLERLDISSNKVSD--ISVLAKLT 199 (466)
T ss_dssp TTCTTCSEEEEEEEE-ECCCG--G-GTTCTTCSEEEEEES--CCCCG--G-GTTCTTCCEEECCSSCCCC--CGGGGGCT
T ss_pred cCCCCCCEEECCCCc-cCCCh--h-hccCCcccEeecCCc--ccCch--h-hccCCCCCEEECcCCcCCC--ChhhccCC
Confidence 889999999999875 33321 2 334899999999753 22211 1 4588999999999998764 45678899
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCC
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (473)
+|++|+++++. +..... +.. +++|+.|+++++...... .+..+++|+.|+++++... ... .+..+++|+
T Consensus 200 ~L~~L~l~~n~-l~~~~~--~~~-l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~l~~n~l~-~~~--~~~~l~~L~ 268 (466)
T 1o6v_A 200 NLESLIATNNQ-ISDITP--LGI-LTNLDELSLNGNQLKDIG----TLASLTNLTDLDLANNQIS-NLA--PLSGLTKLT 268 (466)
T ss_dssp TCSEEECCSSC-CCCCGG--GGG-CTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCC-CCG--GGTTCTTCS
T ss_pred CCCEEEecCCc-cccccc--ccc-cCCCCEEECCCCCcccch----hhhcCCCCCEEECCCCccc-cch--hhhcCCCCC
Confidence 99999999864 333221 344 899999999988743321 2566899999999988533 222 278899999
Q ss_pred eeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEE
Q 012001 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLR 386 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 386 (473)
.|++++|.+..... +. .+++|+.|+++++ .+++. .. +..+++|+.|++++|. +++... ...+++|+.|+
T Consensus 269 ~L~l~~n~l~~~~~--~~-~l~~L~~L~L~~n-~l~~~--~~-~~~l~~L~~L~L~~n~-l~~~~~---~~~l~~L~~L~ 337 (466)
T 1o6v_A 269 ELKLGANQISNISP--LA-GLTALTNLELNEN-QLEDI--SP-ISNLKNLTYLTLYFNN-ISDISP---VSSLTKLQRLF 337 (466)
T ss_dssp EEECCSSCCCCCGG--GT-TCTTCSEEECCSS-CCSCC--GG-GGGCTTCSEEECCSSC-CSCCGG---GGGCTTCCEEE
T ss_pred EEECCCCccCcccc--cc-CCCccCeEEcCCC-cccCc--hh-hcCCCCCCEEECcCCc-CCCchh---hccCccCCEeE
Confidence 99999998876443 33 7899999999985 45432 22 5688999999999986 443322 35799999999
Q ss_pred ccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 387 MECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 387 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
+++|. +++. ..+. .+++|+.|++++|.+++... +..+++|+.|++++| .++.
T Consensus 338 l~~n~-l~~~--~~l~-~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n-~~~~ 389 (466)
T 1o6v_A 338 FYNNK-VSDV--SSLA-NLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ-AWTN 389 (466)
T ss_dssp CCSSC-CCCC--GGGT-TCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCE-EEEC
T ss_pred CCCCc-cCCc--hhhc-cCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCC-cccC
Confidence 99975 5443 2333 89999999999999988764 778999999999999 6664
No 20
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.89 E-value=1.9e-26 Score=225.24 Aligned_cols=183 Identities=16% Similarity=0.059 Sum_probs=106.6
Q ss_pred CcccceeeccccccCch-hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 277 ADYLQQLILAYSFWVSA-DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
+++|++|+++++..... ..+..+..+++|+.|++++|.+...... + ..+++|++|+++++ .+........+..+++
T Consensus 346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~-~~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~ 422 (570)
T 2z63_A 346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-F-LGLEQLEHLDFQHS-NLKQMSEFSVFLSLRN 422 (570)
T ss_dssp CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-E-ETCTTCCEEECTTS-EEESCTTSCTTTTCTT
T ss_pred CCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-c-cccCCCCEEEccCC-ccccccchhhhhcCCC
Confidence 44555555544421110 0133445556666666666554332211 1 14566666666653 2221101112446678
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCee
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 435 (473)
|++|++++|. ++... ......+++|+.|++++|. +++..+......+++|+.|++++|.+++.....+..+++|+.|
T Consensus 423 L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 499 (570)
T 2z63_A 423 LIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 499 (570)
T ss_dssp CCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred CCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCc-CccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEE
Confidence 8888887764 32211 1122457888888888865 3322222223377889999998888888777778888899999
Q ss_pred ecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++++| .++... +.....+++|++|++++|+
T Consensus 500 ~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 500 NMASN-QLKSVP-DGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp ECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred eCCCC-cCCCCC-HHHhhcccCCcEEEecCCc
Confidence 99988 777532 2334478899999998875
No 21
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.89 E-value=1.1e-25 Score=221.24 Aligned_cols=112 Identities=18% Similarity=0.088 Sum_probs=66.1
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
..+++|+.|++++|. ++... ......+++|+.|++++|. +++..+......+++|+.|++++|.+++.....+..++
T Consensus 421 ~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 497 (606)
T 3vq2_A 421 LSLEKLLYLDISYTN-TKIDF-DGIFLGLTSLNTLKMAGNS-FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLH 497 (606)
T ss_dssp TTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hccccCCEEECcCCC-CCccc-hhhhcCCCCCCEEECCCCc-CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccc
Confidence 345566666666554 22111 1112345667777776653 33221222223667778888877777776666677778
Q ss_pred CCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 431 KLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
+|+.|++++| .++... +.....+++|++|++++|.
T Consensus 498 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~l~~N~ 532 (606)
T 3vq2_A 498 RLQLLNMSHN-NLLFLD-SSHYNQLYSLSTLDCSFNR 532 (606)
T ss_dssp TCCEEECCSS-CCSCEE-GGGTTTCTTCCEEECTTSC
T ss_pred cCCEEECCCC-cCCCcC-HHHccCCCcCCEEECCCCc
Confidence 8888888888 666422 3333467788888888775
No 22
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.89 E-value=9.7e-22 Score=178.45 Aligned_cols=247 Identities=18% Similarity=0.238 Sum_probs=199.6
Q ss_pred CCCcEEeeccccCCCCcccccccC--cccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKL--QYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
..++.++++++.+.+ ..+..+ ++++.+++.++. +...... +.. +++|++|+++++. +...++...+..+++
T Consensus 47 ~~~~~l~l~~~~~~~---~~~~~~~~~~l~~L~l~~n~-l~~~~~~-~~~-~~~L~~L~L~~~~-l~~~~~~~~~~~~~~ 119 (336)
T 2ast_B 47 SLWQTLDLTGKNLHP---DVTGRLLSQGVIAFRCPRSF-MDQPLAE-HFS-PFRVQHMDLSNSV-IEVSTLHGILSQCSK 119 (336)
T ss_dssp TTSSEEECTTCBCCH---HHHHHHHHTTCSEEECTTCE-ECSCCCS-CCC-CBCCCEEECTTCE-ECHHHHHHHHTTBCC
T ss_pred hhheeeccccccCCH---HHHHhhhhccceEEEcCCcc-ccccchh-hcc-CCCCCEEEccCCC-cCHHHHHHHHhhCCC
Confidence 458899999887653 333444 788999888743 2221111 223 7899999999887 666667778888999
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC-CCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK-ELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~ 357 (473)
|++|+++++ .+.+..+..+..+++|+.|++++| .+++..+..+...+++|++|++++|..+++.++...+..++ +|+
T Consensus 120 L~~L~L~~~-~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~ 198 (336)
T 2ast_B 120 LQNLSLEGL-RLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETIT 198 (336)
T ss_dssp CSEEECTTC-BCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCC
T ss_pred CCEEeCcCc-ccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCC
Confidence 999999998 466677788889999999999999 68887777766689999999999976888888888888999 999
Q ss_pred EEecCCCC-CCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhhhcCCCCCee
Q 012001 358 KLDITCCR-KITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSISRCSKLSSL 435 (473)
Q Consensus 358 ~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l~~~~~L~~L 435 (473)
+|++++|. .+++..+......+++|+.|++++|..+++..+..+. .+++|+.|++++| .+++.++..++++++|+.|
T Consensus 199 ~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L 277 (336)
T 2ast_B 199 QLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGEIPTLKTL 277 (336)
T ss_dssp EEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEE
T ss_pred EEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEE
Confidence 99999986 5887888888788999999999998878877777665 8899999999998 7888887788889999999
Q ss_pred ecCCCCCcchHHHHHHHhcCccCC
Q 012001 436 KLGICSNITDEGLKHVGSTCSMLK 459 (473)
Q Consensus 436 ~l~~~~~l~~~~~~~~~~~~~~L~ 459 (473)
++++| +++.++..+.+.+++|+
T Consensus 278 ~l~~~--i~~~~~~~l~~~l~~L~ 299 (336)
T 2ast_B 278 QVFGI--VPDGTLQLLKEALPHLQ 299 (336)
T ss_dssp ECTTS--SCTTCHHHHHHHSTTSE
T ss_pred eccCc--cCHHHHHHHHhhCcceE
Confidence 99998 88777887775566665
No 23
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1.7e-24 Score=215.63 Aligned_cols=308 Identities=18% Similarity=0.147 Sum_probs=164.9
Q ss_pred HhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHH
Q 012001 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAA 145 (473)
Q Consensus 66 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~ 145 (473)
.+..+++|++|+++++.. ...... ....+++|++|+++++. +...... .+..+++|++|+++++ .+...+...
T Consensus 44 ~~~~l~~L~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n-~l~~~~~~~ 116 (680)
T 1ziw_A 44 NFTRYSQLTSLDVGFNTI-SKLEPE---LCQKLPMLKVLNLQHNE-LSQLSDK-TFAFCTNLTELHLMSN-SIQKIKNNP 116 (680)
T ss_dssp GGGGGTTCSEEECCSSCC-CCCCTT---HHHHCTTCCEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSS-CCCCCCSCT
T ss_pred HHhCCCcCcEEECCCCcc-CccCHH---HHhcccCcCEEECCCCc-cCccChh-hhccCCCCCEEECCCC-ccCccChhH
Confidence 455667777777766531 111111 12344677777776653 2211111 1236777777777766 344333334
Q ss_pred HHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHH-HhhCCCCcEEeeccccCCCCccccccc
Q 012001 146 IAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELV-ALKCQEIRTLDLSYLPITEKCLPPVVK 224 (473)
Q Consensus 146 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~l~~ 224 (473)
+.++++|++|++.++.. .......+ ..+++|++|+++++. +.......+ ...+++|+.|+++++.+.......+..
T Consensus 117 ~~~l~~L~~L~Ls~n~l-~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~ 193 (680)
T 1ziw_A 117 FVKQKNLITLDLSHNGL-SSTKLGTQ-VQLENLQELLLSNNK-IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHA 193 (680)
T ss_dssp TTTCTTCCEEECCSSCC-SCCCCCSS-SCCTTCCEEECCSSC-CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGG
T ss_pred ccccCCCCEEECCCCcc-cccCchhh-cccccCCEEEccCCc-ccccCHHHhhccccccccEEECCCCcccccChhhhhh
Confidence 66677777777777542 22111111 236777888777753 222222221 124577888888887776655566666
Q ss_pred CcccCeeeccCCCCCChHHHHHHHh--cCCCCcEEecCCCCccchHHHHHHHhcC--cccceeeccccccCchhHHHhhh
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEY--SCKSLKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
+++|+.+.+.++ .+.......+.. ..++|+.|+++++...... ...+..+ ++|+.|+++++. +....+..+.
T Consensus 194 l~~L~~L~l~~~-~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~--~~~~~~l~~~~L~~L~Ls~n~-l~~~~~~~~~ 269 (680)
T 1ziw_A 194 IGRLFGLFLNNV-QLGPSLTEKLCLELANTSIRNLSLSNSQLSTTS--NTTFLGLKWTNLTMLDLSYNN-LNVVGNDSFA 269 (680)
T ss_dssp SSEECEEECTTC-CCHHHHHHHHHHHHTTSCCCEEECTTSCCCEEC--TTTTGGGGGSCCCEEECTTSC-CCEECTTTTT
T ss_pred hhhhhhhhcccc-ccChhhHHHHHHHhhhccccEEEccCCcccccC--hhHhhccCcCCCCEEECCCCC-cCccCccccc
Confidence 777777777663 333333332221 1467888888776532211 0112223 348888887763 3334445667
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH---HHHH----HHHhCCCCcEEecCCCCCCCHHHHH
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE---ELSF----VVQSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~---~~~~----~~~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
.+++|+.|++++|.+.......+. .+++|+.|++.++...... .++. .+..+++|++|+++++. ++....
T Consensus 270 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~-l~~~~~- 346 (680)
T 1ziw_A 270 WLPQLEYFFLEYNNIQHLFSHSLH-GLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDND-IPGIKS- 346 (680)
T ss_dssp TCTTCCEEECCSCCBSEECTTTTT-TCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCC-BCCCCT-
T ss_pred CcccccEeeCCCCccCccChhhhc-CCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCc-cCCCCh-
Confidence 788888888888876654443333 5677777777653211100 0000 23456677777777654 332111
Q ss_pred HHHhcCCCCCEEEccCC
Q 012001 374 SITKTCTSLTSLRMECC 390 (473)
Q Consensus 374 ~~~~~~~~L~~L~l~~~ 390 (473)
.....+++|+.|++++|
T Consensus 347 ~~~~~l~~L~~L~Ls~n 363 (680)
T 1ziw_A 347 NMFTGLINLKYLSLSNS 363 (680)
T ss_dssp TTTTTCTTCCEEECTTC
T ss_pred hHhccccCCcEEECCCC
Confidence 11234666777776654
No 24
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.89 E-value=2.6e-24 Score=203.97 Aligned_cols=357 Identities=15% Similarity=0.044 Sum_probs=241.1
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..++|++|+++++. +....... +..+++|++|+++++......+...+..+++|++|+++++. +.......+. .++
T Consensus 28 l~~~l~~L~Ls~n~-i~~~~~~~-~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNS-IAELNETS-FSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ-FLQLETGAFN-GLA 103 (455)
T ss_dssp CCTTCCEEECCSSC-CCEECTTT-TSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT-TCEECTTTTT-TCT
T ss_pred CCCccCEEEecCCc-cCcCChhH-hccCccccEEECcCCcccceECcccccccccCCEEeCCCCc-cCccChhhcc-Ccc
Confidence 34789999999875 33322222 34899999999999854334333567889999999999875 3332222233 389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccc-cccCcccCeeeccCCCCCChHHHHHHHh-cCCCC
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPP-VVKLQYLEDLVLEGCHGIDDDGLASVEY-SCKSL 254 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~~~~~~~~~~~~l~~-~~~~L 254 (473)
+|++|+++++..............+++|++|++++|.+....... +..+++|++|+++++. +.......+.. ..++|
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L 182 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNK-VKSICEEDLLNFQGKHF 182 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCC-BSCCCTTTSGGGTTCEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCc-ccccChhhhhccccccc
Confidence 999999999753322222222457899999999999887665554 6789999999999853 33222222222 13789
Q ss_pred cEEecCCCCccchHH----HH--HHHhcCcccceeeccccccCchhHHHhhhC---CCCCCeeEecCCcCChhHH-----
Q 012001 255 KALNLSKCQNISHVG----LS--SLIKGADYLQQLILAYSFWVSADLSKCLHN---FPMLQSIKFEDCPVARSGI----- 320 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~----~~--~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~L~~L~l~~~~~~~~~~----- 320 (473)
+.|+++++....... .. ......++|++|+++++. +....+..+.. .++|+.|+++++.......
T Consensus 183 ~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 183 TLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG-FKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC-CCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred cccccccCcccccchhhccccccccccccceeeeEecCCCc-ccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 999998876322110 00 012235789999999884 44444444443 4899999999874322110
Q ss_pred -----HHHH-hhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCC
Q 012001 321 -----KAIG-NWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVS 394 (473)
Q Consensus 321 -----~~l~-~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 394 (473)
..+. ...++|+.|+++++ .++.. .+..+..+++|++|+++++. ++...... ...+++|+.|++++|. ++
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~ 336 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKS-KIFAL-LKSVFSHFTDLEQLTLAQNE-INKIDDNA-FWGLTHLLKLNLSQNF-LG 336 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSS-CCCEE-CTTTTTTCTTCCEEECTTSC-CCEECTTT-TTTCTTCCEEECCSSC-CC
T ss_pred ccCcccccccccccCceEEEecCc-ccccc-chhhcccCCCCCEEECCCCc-ccccChhH-hcCcccCCEEECCCCc-cC
Confidence 0000 03478999999984 45432 23345678999999999876 54332222 2468999999999965 54
Q ss_pred HHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 395 WEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 395 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
......+. .+++|+.|++++|.+++.....+..+++|++|++++| .++.... .....+++|++|++++|+
T Consensus 337 ~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 337 SIDSRMFE-NLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTN-QLKSVPD-GIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp EECGGGGT-TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred CcChhHhc-CcccCCEEECCCCcccccChhhccccccccEEECCCC-ccccCCH-hHhccCCcccEEEccCCC
Confidence 43223333 7899999999999999887788889999999999999 8885322 234589999999999876
No 25
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.89 E-value=1e-24 Score=217.33 Aligned_cols=330 Identities=18% Similarity=0.121 Sum_probs=175.1
Q ss_pred CCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHH-------HH
Q 012001 126 FLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVEL-------VA 198 (473)
Q Consensus 126 ~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~-------~~ 198 (473)
+|++|+++++. +.......+..+++|++|++.++. +.......+ ..+++|+.|++.++.......... ..
T Consensus 249 ~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~ 325 (680)
T 1ziw_A 249 NLTMLDLSYNN-LNVVGNDSFAWLPQLEYFFLEYNN-IQHLFSHSL-HGLFNVRYLNLKRSFTKQSISLASLPKIDDFSF 325 (680)
T ss_dssp CCCEEECTTSC-CCEECTTTTTTCTTCCEEECCSCC-BSEECTTTT-TTCTTCCEEECTTCBCCC------CCEECTTTT
T ss_pred CCCEEECCCCC-cCccCcccccCcccccEeeCCCCc-cCccChhhh-cCCCCccEEeccchhhhcccccccccccChhhc
Confidence 46666666652 333322345556666666666643 222111111 225666666665432111111000 11
Q ss_pred hhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCC---------------------------CCChHHHHHHHhcC
Q 012001 199 LKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH---------------------------GIDDDGLASVEYSC 251 (473)
Q Consensus 199 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~~~ 251 (473)
..+++|++|+++++.+.......+..+++|++|+++++. .+.......+.. +
T Consensus 326 ~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~-l 404 (680)
T 1ziw_A 326 QWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSW-L 404 (680)
T ss_dssp TTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTT-C
T ss_pred ccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhC-C
Confidence 245666666666666655444445556666666665532 111111111222 4
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh--hHHHHHHhhCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHGS 329 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~ 329 (473)
++|+.|+++++....... ...+..+++|++|+++++. +.......+..+++|+.|++.++.+.. ..+..+. .+++
T Consensus 405 ~~L~~L~L~~N~l~~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~-~l~~ 481 (680)
T 1ziw_A 405 GHLEVLDLGLNEIGQELT-GQEWRGLENIFEIYLSYNK-YLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ-PLRN 481 (680)
T ss_dssp TTCCEEECCSSCCEEECC-SGGGTTCTTCCEEECCSCS-EEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTT-TCTT
T ss_pred CCCCEEeCCCCcCccccC-cccccCcccccEEecCCCC-cceeChhhhhcCcccccchhccccccccccCCcccc-cCCC
Confidence 555555555544211000 0113345556666665553 222233344556666666666665431 1112222 5677
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHH-------HHHhcCCCCCEEEccCCCCCCHHHHHHHH
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASIN-------SITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~-------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
|+.|+++++ .++.. ....+..+++|++|+++++. ++..... .....+++|+.|+++++. ++......+
T Consensus 482 L~~L~Ls~N-~l~~i-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~i~~~~~- 556 (680)
T 1ziw_A 482 LTILDLSNN-NIANI-NDDMLEGLEKLEILDLQHNN-LARLWKHANPGGPIYFLKGLSHLHILNLESNG-FDEIPVEVF- 556 (680)
T ss_dssp CCEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CGGGGSTTSTTSCCCTTTTCTTCCEEECCSSC-CCCCCTTTT-
T ss_pred CCEEECCCC-CCCcC-ChhhhccccccCEEeCCCCC-ccccchhhccCCcchhhcCCCCCCEEECCCCC-CCCCCHHHc-
Confidence 888888773 44321 12234567788888888765 4322110 012457888888888754 442211112
Q ss_pred hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 403 QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 403 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
..+++|+.|++++|.++......+..+++|+.|++++| .++......+...+++|++|++++||-
T Consensus 557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~~~L~~l~l~~N~~ 621 (680)
T 1ziw_A 557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKN-LITSVEKKVFGPAFRNLTELDMRFNPF 621 (680)
T ss_dssp TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTS-CCCBCCHHHHHHHHTTCSEEECTTCCC
T ss_pred ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCC-cCCccChhHhcccccccCEEEccCCCc
Confidence 37888999999888888766666677889999999998 777544333433678899999988663
No 26
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.88 E-value=4.6e-25 Score=216.57 Aligned_cols=349 Identities=15% Similarity=0.142 Sum_probs=224.7
Q ss_pred cccCCCccEEEcCCCccccHH----------------HHHHHhh--cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEe
Q 012001 95 SSWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLW 156 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 156 (473)
...+++|++|+++++. +... .++.... .+++|++|+++++......+ ..+.++++|++|+
T Consensus 202 l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~ 279 (636)
T 4eco_A 202 VMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKALPEMQLIN 279 (636)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTTTTCSSCCEEE
T ss_pred HhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHHhcCCCCCEEE
Confidence 4567889999998875 3331 1333333 68899999998885444333 5677889999999
Q ss_pred cccCcccCH-HHHHHHHh-----cCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCe
Q 012001 157 LARCKLITD-LGIGRIAA-----CCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLED 230 (473)
Q Consensus 157 l~~~~~~~~-~~~~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 230 (473)
+.++..++. .-...+.. .+++|++|+++++. +...+.......+++|+.|++++|.+.+... .+..+++|+.
T Consensus 280 Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~-l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~ 357 (636)
T 4eco_A 280 VACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLAS 357 (636)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC-CSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESE
T ss_pred CcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc-CCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCE
Confidence 998764554 22222222 24889999998864 3322221134578899999999988764444 7778889999
Q ss_pred eeccCCCCCChHHHHHHHhcCCC-CcEEecCCCCccchHHHHHHHhc--CcccceeeccccccCchhHHHhhh-------
Q 012001 231 LVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKG--ADYLQQLILAYSFWVSADLSKCLH------- 300 (473)
Q Consensus 231 L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~------- 300 (473)
|+++++. +... ...+.. +++ |+.|+++++... . ++..+.. +++|+.|+++++. +....+..+.
T Consensus 358 L~L~~N~-l~~l-p~~l~~-l~~~L~~L~Ls~N~l~-~--lp~~~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~~~~~~~ 430 (636)
T 4eco_A 358 LNLAYNQ-ITEI-PANFCG-FTEQVENLSFAHNKLK-Y--IPNIFDAKSVSVMSAIDFSYNE-IGSVDGKNFDPLDPTPF 430 (636)
T ss_dssp EECCSSE-EEEC-CTTSEE-ECTTCCEEECCSSCCS-S--CCSCCCTTCSSCEEEEECCSSC-TTTTTTCSSCTTCSSCC
T ss_pred EECCCCc-cccc-cHhhhh-hcccCcEEEccCCcCc-c--cchhhhhcccCccCEEECcCCc-CCCcchhhhcccccccc
Confidence 9998853 3311 112333 677 999999887632 2 1111222 3478899988874 4444444455
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHH-HHHh-------CCCCcEEecCCCCCCCHHHH
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSF-VVQS-------HKELRKLDITCCRKITYASI 372 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-~~~~-------~~~L~~L~l~~~~~~~~~~~ 372 (473)
.+++|+.|++++|.+.. .+..+...+++|++|+++++ .++. ++. .+.. +++|+.|+++++. ++. +
T Consensus 431 ~~~~L~~L~Ls~N~l~~-lp~~~~~~l~~L~~L~Ls~N-~l~~--i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--l 503 (636)
T 4eco_A 431 KGINVSSINLSNNQISK-FPKELFSTGSPLSSINLMGN-MLTE--IPKNSLKDENENFKNTYLLTSIDLRFNK-LTK--L 503 (636)
T ss_dssp CCCCEEEEECCSSCCCS-CCTHHHHTTCCCSEEECCSS-CCSB--CCSSSSEETTEECTTGGGCCEEECCSSC-CCB--C
T ss_pred cCCCCCEEECcCCccCc-CCHHHHccCCCCCEEECCCC-CCCC--cCHHHhccccccccccCCccEEECcCCc-CCc--c
Confidence 66789999999988773 33344436789999999884 4442 111 1111 1288999998875 552 2
Q ss_pred HHHHh--cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec------ccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 373 NSITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT------ENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 373 ~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~------~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+.... .+++|+.|+++++. ++. ++.....+++|+.|+++ +|.+....+..+..+++|+.|++++| .++
T Consensus 504 p~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N-~l~ 579 (636)
T 4eco_A 504 SDDFRATTLPYLVGIDLSYNS-FSK--FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSN-DIR 579 (636)
T ss_dssp CGGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCC
T ss_pred ChhhhhccCCCcCEEECCCCC-CCC--cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCC-cCC
Confidence 22222 67889999998855 443 22222378889999884 46666666667778889999999988 775
Q ss_pred hHHHHHHHhcCccCCeeecCCCCCc
Q 012001 445 DEGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 445 ~~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
. ++.. -.++|++|++++|+-.
T Consensus 580 ~--ip~~--~~~~L~~L~Ls~N~l~ 600 (636)
T 4eco_A 580 K--VNEK--ITPNISVLDIKDNPNI 600 (636)
T ss_dssp B--CCSC--CCTTCCEEECCSCTTC
T ss_pred c--cCHh--HhCcCCEEECcCCCCc
Confidence 3 3322 2378888888888643
No 27
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.88 E-value=3.1e-24 Score=214.19 Aligned_cols=348 Identities=15% Similarity=0.125 Sum_probs=224.6
Q ss_pred cccCCCccEEEcCCCccccHH----------------HHHHHhh--cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEe
Q 012001 95 SSWKLTLRSINLSRSRLFTKV----------------GLSSLTV--NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLW 156 (473)
Q Consensus 95 ~~~~~~L~~L~l~~~~~~~~~----------------~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 156 (473)
...+++|++|+++++. +... .++.-.. .+++|++|+++++......+ ..+.++++|++|+
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l~~L~~L~~L~ 521 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFLYDLPELQSLN 521 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGGGGCSSCCEEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHHhCCCCCCEEE
Confidence 4566889999998875 3331 1333332 78899999998885444433 6688899999999
Q ss_pred cccCcccCH-H---HHHHHH---hcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 157 LARCKLITD-L---GIGRIA---ACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 157 l~~~~~~~~-~---~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
++++..++. . .+..+. ..+++|+.|+++++. +...+.......+++|+.|++++|.+. .++.+..+++|+
T Consensus 522 Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~l~~L~~L~~L~Ls~N~l~--~lp~~~~L~~L~ 598 (876)
T 4ecn_A 522 IACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN-LEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLT 598 (876)
T ss_dssp CTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC-CCBCCCHHHHTTCTTCCEEECTTSCCC--BCCCCCTTSEES
T ss_pred CcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc-CCccCChhhhhcCCCCCEEECCCCCcc--cchhhcCCCcce
Confidence 998753544 1 122222 235689999998864 333222113457889999999999887 344777889999
Q ss_pred eeeccCCCCCChHHHHHHHhcCCC-CcEEecCCCCccchHHHHHHHhcC--cccceeeccccccCchhHH---Hhhh--C
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKS-LKALNLSKCQNISHVGLSSLIKGA--DYLQQLILAYSFWVSADLS---KCLH--N 301 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~~~~~~--~~L~~L~l~~~~~~~~~~~---~~l~--~ 301 (473)
.|+++++. +.. ....+.. +++ |+.|+++++... . ++..+... ++|+.|+++++.... ..+ ..+. .
T Consensus 599 ~L~Ls~N~-l~~-lp~~l~~-l~~~L~~L~Ls~N~L~-~--lp~~~~~~~~~~L~~L~Ls~N~l~g-~ip~l~~~l~~~~ 671 (876)
T 4ecn_A 599 DLKLDYNQ-IEE-IPEDFCA-FTDQVEGLGFSHNKLK-Y--IPNIFNAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYK 671 (876)
T ss_dssp EEECCSSC-CSC-CCTTSCE-ECTTCCEEECCSSCCC-S--CCSCCCTTCSSCEEEEECCSSCTTT-TSSSCSSCTTTCC
T ss_pred EEECcCCc-ccc-chHHHhh-ccccCCEEECcCCCCC-c--CchhhhccccCCCCEEECcCCcCCC-ccccchhhhcccc
Confidence 99998853 432 1122333 677 999999987632 2 11222222 348889988874322 211 1122 3
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHH--------HhCCCCcEEecCCCCCCCHHHHH
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVV--------QSHKELRKLDITCCRKITYASIN 373 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~~~~~~ 373 (473)
+++|+.|++++|.+.. .+..+...+++|+.|+++++ .++. ++... ..+++|+.|++++|. ++. ++
T Consensus 672 ~~~L~~L~Ls~N~L~~-lp~~~~~~l~~L~~L~Ls~N-~L~~--ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp 744 (876)
T 4ecn_A 672 GINASTVTLSYNEIQK-FPTELFATGSPISTIILSNN-LMTS--IPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LS 744 (876)
T ss_dssp CCCEEEEECCSSCCCS-CCHHHHHTTCCCSEEECCSC-CCSC--CCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CC
T ss_pred CCCcCEEEccCCcCCc-cCHHHHccCCCCCEEECCCC-cCCc--cChHHhccccccccccCCccEEECCCCC-Ccc--ch
Confidence 4589999999998873 34444447889999999884 4441 22111 122389999998875 552 22
Q ss_pred HHHh--cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc------cccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 374 SITK--TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE------NEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 374 ~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~------~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
.... .+++|+.|++++|. ++. ++.....+++|+.|++++ |.+....+..+..+++|+.|++++| .++.
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~-L~~--lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N-~L~~ 820 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNC-FSS--FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN-DIRK 820 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSC-CSS--CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS-CCCB
T ss_pred HHhhhccCCCcCEEEeCCCC-CCc--cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC-CCCc
Confidence 2223 67899999998865 443 222233788999999876 6666666667778899999999999 7753
Q ss_pred HHHHHHHhcCccCCeeecCCCCCc
Q 012001 446 EGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 446 ~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
++.. -.++|+.|++++|+-.
T Consensus 821 --Ip~~--l~~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 821 --VDEK--LTPQLYILDIADNPNI 840 (876)
T ss_dssp --CCSC--CCSSSCEEECCSCTTC
T ss_pred --cCHh--hcCCCCEEECCCCCCC
Confidence 3322 2468999999988754
No 28
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.88 E-value=7e-24 Score=206.05 Aligned_cols=367 Identities=14% Similarity=0.103 Sum_probs=206.9
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|+++++.- ...... ....+++|++|+++++. +....... +..+++|++|+++++. +...+.. .++
T Consensus 52 ~~L~~L~Ls~N~i-~~~~~~---~~~~l~~L~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~Ls~N~-l~~lp~~---~l~ 121 (562)
T 3a79_B 52 PRTKALSLSQNSI-SELRMP---DISFLSELRVLRLSHNR-IRSLDFHV-FLFNQDLEYLDVSHNR-LQNISCC---PMA 121 (562)
T ss_dssp TTCCEEECCSSCC-CCCCGG---GTTTCTTCCEEECCSCC-CCEECTTT-TTTCTTCCEEECTTSC-CCEECSC---CCT
T ss_pred CCcCEEECCCCCc-cccChh---hhccCCCccEEECCCCC-CCcCCHHH-hCCCCCCCEEECCCCc-CCccCcc---ccc
Confidence 6788888887642 211111 23556788888887764 33222222 3367888888888773 4443322 678
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC--cEEeeccccC--CCCcccccc---
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI--RTLDLSYLPI--TEKCLPPVV--- 223 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~~~~~l~--- 223 (473)
+|++|+++++. +...........+++|++|+++++. +....+ ..+++| +.|+++++.+ .......+.
T Consensus 122 ~L~~L~Ls~N~-l~~l~~p~~~~~l~~L~~L~L~~n~-l~~~~~----~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~ 195 (562)
T 3a79_B 122 SLRHLDLSFND-FDVLPVCKEFGNLTKLTFLGLSAAK-FRQLDL----LPVAHLHLSCILLDLVSYHIKGGETESLQIPN 195 (562)
T ss_dssp TCSEEECCSSC-CSBCCCCGGGGGCTTCCEEEEECSB-CCTTTT----GGGTTSCEEEEEEEESSCCCCSSSCCEEEECC
T ss_pred cCCEEECCCCC-ccccCchHhhcccCcccEEecCCCc-cccCch----hhhhhceeeEEEeecccccccccCcccccccC
Confidence 88888888764 3322211122237888888888753 333222 244555 8888887766 333222222
Q ss_pred -----------------------cCcccCeeeccCCCCCC---hHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH--h
Q 012001 224 -----------------------KLQYLEDLVLEGCHGID---DDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI--K 275 (473)
Q Consensus 224 -----------------------~~~~L~~L~l~~~~~~~---~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~--~ 275 (473)
.+++|+.++++++.... ......+.. .++|+.+++..+. +....+..+. .
T Consensus 196 ~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~-l~~L~~L~L~~~~-l~~~~~~~~~~~~ 273 (562)
T 3a79_B 196 TTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTR-GPTLLNVTLQHIE-TTWKCSVKLFQFF 273 (562)
T ss_dssp EEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHS-CSSCEEEEEEEEE-ECHHHHHHHHHHH
T ss_pred cceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhc-cCcceEEEecCCc-CcHHHHHHHHHhh
Confidence 34566666666532100 011122222 4555555554433 2221111111 1
Q ss_pred cCcccceeeccccccC---ch---------------------------hHHHh----------------------hhCCC
Q 012001 276 GADYLQQLILAYSFWV---SA---------------------------DLSKC----------------------LHNFP 303 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~---~~---------------------------~~~~~----------------------l~~~~ 303 (473)
..++|++|+++++... .. ..... ...++
T Consensus 274 ~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~ 353 (562)
T 3a79_B 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPS 353 (562)
T ss_dssp TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCC
T ss_pred hcccccEEEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCC
Confidence 1234555554443211 00 00000 15677
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH-HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE-ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+|+.|++++|.+.+..+..+. .+++|+.|+++++ .++.. .++..+..+++|+.|+++++. ++..........+++|
T Consensus 354 ~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~l~~L 430 (562)
T 3a79_B 354 SFTFLNFTQNVFTDSVFQGCS-TLKRLQTLILQRN-GLKNFFKVALMTKNMSSLETLDVSLNS-LNSHAYDRTCAWAESI 430 (562)
T ss_dssp CCCEEECCSSCCCTTTTTTCC-SCSSCCEEECCSS-CCCBTTHHHHTTTTCTTCCEEECTTSC-CBSCCSSCCCCCCTTC
T ss_pred CceEEECCCCccccchhhhhc-ccCCCCEEECCCC-CcCCcccchhhhcCCCCCCEEECCCCc-CCCccChhhhcCcccC
Confidence 888888888887764444443 6788888888884 55531 234456677888888888775 3321011112356888
Q ss_pred CEEEccCCCCCCHHHHHHHHhcC-ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHH-HhcCccCCe
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQC-QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHV-GSTCSMLKE 460 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~-~~~~~~L~~ 460 (473)
+.|++++|. ++..... .+ ++|+.|++++|.++... ..+..+++|+.|++++| +++. ++.. ...+++|++
T Consensus 431 ~~L~l~~n~-l~~~~~~----~l~~~L~~L~L~~N~l~~ip-~~~~~l~~L~~L~L~~N-~l~~--l~~~~~~~l~~L~~ 501 (562)
T 3a79_B 431 LVLNLSSNM-LTGSVFR----CLPPKVKVLDLHNNRIMSIP-KDVTHLQALQELNVASN-QLKS--VPDGVFDRLTSLQY 501 (562)
T ss_dssp CEEECCSSC-CCGGGGS----SCCTTCSEEECCSSCCCCCC-TTTTSSCCCSEEECCSS-CCCC--CCTTSTTTCTTCCC
T ss_pred CEEECCCCC-CCcchhh----hhcCcCCEEECCCCcCcccC-hhhcCCCCCCEEECCCC-CCCC--CCHHHHhcCCCCCE
Confidence 888888855 5533222 33 58999999998887543 33447889999999998 7773 3332 457889999
Q ss_pred eecCCCC
Q 012001 461 LDLYRFV 467 (473)
Q Consensus 461 L~l~~c~ 467 (473)
|++++|+
T Consensus 502 L~l~~N~ 508 (562)
T 3a79_B 502 IWLHDNP 508 (562)
T ss_dssp EECCSCC
T ss_pred EEecCCC
Confidence 9998876
No 29
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.88 E-value=1.3e-22 Score=197.10 Aligned_cols=328 Identities=17% Similarity=0.141 Sum_probs=194.3
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..++|++|+++++. +.......+ ..+++|++|+++++ .+.......+..+++|++|+++++. +.......+. .++
T Consensus 24 ~~~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNK-ITYIGHGDL-RACANLQVLILKSS-RINTIEGDAFYSLGSLEHLDLSDNH-LSSLSSSWFG-PLS 98 (549)
T ss_dssp CCTTCCEEECCSSC-CCEECSSTT-SSCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTSC-CCSCCHHHHT-TCT
T ss_pred CCCCccEEECcCCc-cCccChhhh-hcCCcccEEECCCC-CcCccChhhccccccCCEEECCCCc-cCccCHHHhc-cCC
Confidence 34799999999875 332222223 48999999999998 4655554668889999999999975 4443333344 499
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeecccc-CCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLP-ITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
+|++|+++++. +...+.......+++|++|++++|. +.......+..+++|++|+++++. +.......+.. +++|+
T Consensus 99 ~L~~L~Ls~n~-l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~-l~~L~ 175 (549)
T 2z81_A 99 SLKYLNLMGNP-YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALS-LRNYQSQSLKS-IRDIH 175 (549)
T ss_dssp TCCEEECTTCC-CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETT-CCEECTTTTTT-CSEEE
T ss_pred CCcEEECCCCc-ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCc-ccccChhhhhc-cccCc
Confidence 99999999874 3322211223478999999999997 433333567789999999999853 44333334444 88999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchh--HHHhhhCCCCCCeeEecCCcCChhHHHHHHh--------
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSAD--LSKCLHNFPMLQSIKFEDCPVARSGIKAIGN-------- 325 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~-------- 325 (473)
+|+++.+..... ...+...+++|+.|+++++...... .......+++|+.|++.++.+.+..+..+..
T Consensus 176 ~L~l~~n~~~~~--~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L 253 (549)
T 2z81_A 176 HLTLHLSESAFL--LEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILEL 253 (549)
T ss_dssp EEEEECSBSTTH--HHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTC
T ss_pred eEecccCccccc--chhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccc
Confidence 999998763221 1223456899999999876432210 0011123445555555555444443333321
Q ss_pred ------------------------------------------------------hCCCCCeEecCCCCCCChHHHH-HHH
Q 012001 326 ------------------------------------------------------WHGSLKELSLSKCSGVTDEELS-FVV 350 (473)
Q Consensus 326 ------------------------------------------------------~~~~L~~L~l~~~~~~~~~~~~-~~~ 350 (473)
..++|++|+++++ .+.. ++ .++
T Consensus 254 ~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n-~l~~--ip~~~~ 330 (549)
T 2z81_A 254 SEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENS-KVFL--VPCSFS 330 (549)
T ss_dssp CEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESS-CCCC--CCHHHH
T ss_pred cccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccC-cccc--CCHHHH
Confidence 1233444444432 2221 11 123
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCCCEEEccCCCCCCHHH-HHHHHhcCccCCeeeecccccChhhhhhhh
Q 012001 351 QSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
..+++|++|+++++. ++....... ...+++|+.|++++|. ++... .......+++|+.|++++|.++.. +..+.
T Consensus 331 ~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l-p~~~~ 407 (549)
T 2z81_A 331 QHLKSLEFLDLSENL-MVEEYLKNSACKGAWPSLQTLVLSQNH-LRSMQKTGEILLTLKNLTSLDISRNTFHPM-PDSCQ 407 (549)
T ss_dssp HHCTTCCEEECCSSC-CCHHHHHHHTCTTSSTTCCEEECTTSC-CCCHHHHHHHGGGCTTCCEEECTTCCCCCC-CSCCC
T ss_pred hcCccccEEEccCCc-cccccccchhhhhccccCcEEEccCCc-ccccccchhhhhcCCCCCEEECCCCCCccC-Chhhc
Confidence 456777777777665 444322211 2356777777777754 43322 122333667777777777766632 22334
Q ss_pred cCCCCCeeecCCC
Q 012001 428 RCSKLSSLKLGIC 440 (473)
Q Consensus 428 ~~~~L~~L~l~~~ 440 (473)
.+++|++|++++|
T Consensus 408 ~~~~L~~L~Ls~N 420 (549)
T 2z81_A 408 WPEKMRFLNLSST 420 (549)
T ss_dssp CCTTCCEEECTTS
T ss_pred ccccccEEECCCC
Confidence 4555555555555
No 30
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.87 E-value=1.3e-24 Score=213.30 Aligned_cols=328 Identities=13% Similarity=0.095 Sum_probs=225.2
Q ss_pred HhhcCCCCcEEEcCCCCcccHH-----------------HHHHHH--cCCCCCEEecccCcccCHHHHHHHHhcCCcCce
Q 012001 120 LTVNCRFLTEIDLSNGTEMGDA-----------------AAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLKL 180 (473)
Q Consensus 120 l~~~~~~L~~L~l~~~~~~~~~-----------------~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 180 (473)
....+++|++|+++++. +... ....+. ++++|++|++.++......+ ..+ ..+++|++
T Consensus 201 ~l~~l~~L~~L~Ls~n~-l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p-~~l-~~l~~L~~ 277 (636)
T 4eco_A 201 AVMRLTKLRQFYMGNSP-FVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFL-KALPEMQL 277 (636)
T ss_dssp GGGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCC-TTT-TTCSSCCE
T ss_pred HHhcccCCCEEECcCCc-cccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccCh-HHH-hcCCCCCE
Confidence 34479999999999985 5551 234566 89999999999875433211 222 23899999
Q ss_pred eecccCCCCCHHHHHHHHh------hCCCCcEEeeccccCCCCccc--ccccCcccCeeeccCCCCCC-hHHHHHHHhcC
Q 012001 181 LCLKWCIRVTDLGVELVAL------KCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGID-DDGLASVEYSC 251 (473)
Q Consensus 181 L~l~~~~~~~~~~~~~~~~------~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~ 251 (473)
|+++++..++...+..... .+++|++|++++|.++ .... .+.++++|++|+++++. +. ... .+.. +
T Consensus 278 L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~-l~g~ip--~~~~-l 352 (636)
T 4eco_A 278 INVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQ-LEGKLP--AFGS-E 352 (636)
T ss_dssp EECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCC-CEEECC--CCEE-E
T ss_pred EECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCc-Cccchh--hhCC-C
Confidence 9999986466522222222 3499999999999887 4555 68899999999999854 33 222 3443 7
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcc-cceeeccccccCchhHHHhhhCC--CCCCeeEecCCcCChhHHHHHHh---
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNF--PMLQSIKFEDCPVARSGIKAIGN--- 325 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~l~~--- 325 (473)
++|+.|+++++... .++..+..+++ |++|+++++. +. .++..+... ++|+.|++++|.+....+..+..
T Consensus 353 ~~L~~L~L~~N~l~---~lp~~l~~l~~~L~~L~Ls~N~-l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~ 427 (636)
T 4eco_A 353 IKLASLNLAYNQIT---EIPANFCGFTEQVENLSFAHNK-LK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDP 427 (636)
T ss_dssp EEESEEECCSSEEE---ECCTTSEEECTTCCEEECCSSC-CS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCS
T ss_pred CCCCEEECCCCccc---cccHhhhhhcccCcEEEccCCc-Cc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccc
Confidence 89999999988632 22223556778 9999999885 33 455555544 48999999999887654433320
Q ss_pred ---hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH------hcCCCCCEEEccCCCCCCHH
Q 012001 326 ---WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT------KTCTSLTSLRMECCKLVSWE 396 (473)
Q Consensus 326 ---~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~------~~~~~L~~L~l~~~~~~~~~ 396 (473)
.+++|+.|+++++ .++.. -..++..+++|++|+++++. ++......+. ..+++|+.|++++|. ++.
T Consensus 428 ~~~~~~~L~~L~Ls~N-~l~~l-p~~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~- 502 (636)
T 4eco_A 428 TPFKGINVSSINLSNN-QISKF-PKELFSTGSPLSSINLMGNM-LTEIPKNSLKDENENFKNTYLLTSIDLRFNK-LTK- 502 (636)
T ss_dssp SCCCCCCEEEEECCSS-CCCSC-CTHHHHTTCCCSEEECCSSC-CSBCCSSSSEETTEECTTGGGCCEEECCSSC-CCB-
T ss_pred ccccCCCCCEEECcCC-ccCcC-CHHHHccCCCCCEEECCCCC-CCCcCHHHhccccccccccCCccEEECcCCc-CCc-
Confidence 3468999999984 55421 12345568999999999875 4422111110 012299999999965 552
Q ss_pred HHHHHH--hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC-----CcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 397 AFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 397 ~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
+.... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. .+.. .++.....+++|++|++++|.-
T Consensus 503 -lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~-~~p~~l~~l~~L~~L~Ls~N~l 578 (636)
T 4eco_A 503 -LSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLR-EWPEGITLCPSLTQLQIGSNDI 578 (636)
T ss_dssp -CCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC
T ss_pred -cChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccc-cChHHHhcCCCCCEEECCCCcC
Confidence 32222 278999999999999987 45677789999999996542 3332 2334445799999999999864
No 31
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=8e-25 Score=222.17 Aligned_cols=162 Identities=16% Similarity=0.045 Sum_probs=74.1
Q ss_pred HhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHH-
Q 012001 66 TSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAA- 144 (473)
Q Consensus 66 ~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~- 144 (473)
.+..+++|+.|+++++......... ....+++|++|+++++. +.... +..+..+++|++|+++++. +.+....
T Consensus 43 ~~~~l~~L~~LdLs~n~~~~~i~~~---~f~~L~~L~~L~Ls~N~-l~~~~-p~~~~~l~~L~~L~Ls~n~-l~~~~~~~ 116 (844)
T 3j0a_A 43 SFPFLEQLQLLELGSQYTPLTIDKE---AFRNLPNLRILDLGSSK-IYFLH-PDAFQGLFHLFELRLYFCG-LSDAVLKD 116 (844)
T ss_dssp SCSSCCSCSEEEECTTCCCCEECTT---TTSSCTTCCEEECTTCC-CCEEC-TTSSCSCSSCCCEECTTCC-CSSCCSTT
T ss_pred HCcccccCeEEeCCCCCCccccCHH---HhcCCCCCCEEECCCCc-CcccC-HhHccCCcccCEeeCcCCC-CCcccccC
Confidence 3455666666666665322211111 12455667777776653 22111 1222356667777776663 3321111
Q ss_pred -HHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCC--CHHHHHHHHhhCCCCcEEeeccccCCCCcccc
Q 012001 145 -AIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRV--TDLGVELVALKCQEIRTLDLSYLPITEKCLPP 221 (473)
Q Consensus 145 -~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 221 (473)
.+..+++|++|+++++.. ...........+++|++|+++++... ....+..+. .++|+.|+++++.+.......
T Consensus 117 ~~~~~L~~L~~L~Ls~N~l-~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~--~~~L~~L~L~~n~l~~~~~~~ 193 (844)
T 3j0a_A 117 GYFRNLKALTRLDLSKNQI-RSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ--GKTLSFFSLAANSLYSRVSVD 193 (844)
T ss_dssp CCCSSCSSCCEEEEESCCC-CCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH--HCSSCCCEECCSBSCCCCCCC
T ss_pred ccccccCCCCEEECCCCcc-cccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc--CCccceEECCCCccccccccc
Confidence 245566677777666542 22111111223666777776664321 111122111 145555555555444433333
Q ss_pred cccCcc------cCeeeccCC
Q 012001 222 VVKLQY------LEDLVLEGC 236 (473)
Q Consensus 222 l~~~~~------L~~L~l~~~ 236 (473)
+..+++ |+.|+++++
T Consensus 194 ~~~~~~~~~~~~L~~L~Ls~n 214 (844)
T 3j0a_A 194 WGKCMNPFRNMVLEILDVSGN 214 (844)
T ss_dssp CCSSSCTTTTCCBSEEBCSSC
T ss_pred hhhcCCccccCceeEEecCCC
Confidence 333332 555555553
No 32
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.86 E-value=3.4e-23 Score=206.69 Aligned_cols=327 Identities=14% Similarity=0.078 Sum_probs=223.0
Q ss_pred hhcCCCCcEEEcCCCCcccH-----------------HHHHHHH--cCCCCCEEecccCcccCHHHHHHHHhcCCcCcee
Q 012001 121 TVNCRFLTEIDLSNGTEMGD-----------------AAAAAIA--EAKNLERLWLARCKLITDLGIGRIAACCRKLKLL 181 (473)
Q Consensus 121 ~~~~~~L~~L~l~~~~~~~~-----------------~~~~~l~--~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 181 (473)
...+++|++|+++++. +.. .....++ ++++|++|++.+|......+ ..+ ..+++|+.|
T Consensus 444 l~~L~~L~~L~Ls~N~-Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP-~~l-~~L~~L~~L 520 (876)
T 4ecn_A 444 IQRLTKLQIIYFANSP-FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLP-DFL-YDLPELQSL 520 (876)
T ss_dssp GGGCTTCCEEEEESCC-CCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCC-GGG-GGCSSCCEE
T ss_pred HhcCCCCCEEECcCCc-CCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccCh-HHH-hCCCCCCEE
Confidence 4479999999999985 554 1224444 89999999999876433222 223 348999999
Q ss_pred ecccCCCCCH--HH--HHHH---HhhCCCCcEEeeccccCCCCccc--ccccCcccCeeeccCCCCCChHHHHHHHhcCC
Q 012001 182 CLKWCIRVTD--LG--VELV---ALKCQEIRTLDLSYLPITEKCLP--PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCK 252 (473)
Q Consensus 182 ~l~~~~~~~~--~~--~~~~---~~~~~~L~~L~l~~~~~~~~~~~--~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 252 (473)
+++++..++. .+ +..+ ...+++|+.|++++|.+. .... .+.++++|+.|+++++. +...+ .+.. ++
T Consensus 521 ~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~-l~~lp--~~~~-L~ 595 (876)
T 4ecn_A 521 NIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNK-VRHLE--AFGT-NV 595 (876)
T ss_dssp ECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSC-CCBCC--CCCT-TS
T ss_pred ECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCC-cccch--hhcC-CC
Confidence 9999764665 22 2211 124569999999999888 4445 68899999999999854 44322 3444 89
Q ss_pred CCcEEecCCCCccchHHHHHHHhcCcc-cceeeccccccCchhHHHhhhCCC--CCCeeEecCCcCChhHHH---HHH-h
Q 012001 253 SLKALNLSKCQNISHVGLSSLIKGADY-LQQLILAYSFWVSADLSKCLHNFP--MLQSIKFEDCPVARSGIK---AIG-N 325 (473)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--~L~~L~l~~~~~~~~~~~---~l~-~ 325 (473)
+|+.|+++++... . ++..+..+++ |+.|+++++. +. .++..+...+ +|+.|++++|.+...... .+. .
T Consensus 596 ~L~~L~Ls~N~l~-~--lp~~l~~l~~~L~~L~Ls~N~-L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~ 670 (876)
T 4ecn_A 596 KLTDLKLDYNQIE-E--IPEDFCAFTDQVEGLGFSHNK-LK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDY 670 (876)
T ss_dssp EESEEECCSSCCS-C--CCTTSCEECTTCCEEECCSSC-CC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTC
T ss_pred cceEEECcCCccc-c--chHHHhhccccCCEEECcCCC-CC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhccc
Confidence 9999999988733 1 2223555777 9999999885 33 4455555544 499999999987653211 010 0
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH------HhcCCCCCEEEccCCCCCCHHHHH
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI------TKTCTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~------~~~~~~L~~L~l~~~~~~~~~~~~ 399 (473)
.+++|+.|+++++ .++.. -..++..+++|+.|+++++. ++....... ..++++|+.|++++|. ++. ++
T Consensus 671 ~~~~L~~L~Ls~N-~L~~l-p~~~~~~l~~L~~L~Ls~N~-L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~-L~~--lp 744 (876)
T 4ecn_A 671 KGINASTVTLSYN-EIQKF-PTELFATGSPISTIILSNNL-MTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-LTS--LS 744 (876)
T ss_dssp CCCCEEEEECCSS-CCCSC-CHHHHHTTCCCSEEECCSCC-CSCCCTTSSSCTTSCCTTGGGCCEEECCSSC-CCC--CC
T ss_pred cCCCcCEEEccCC-cCCcc-CHHHHccCCCCCEEECCCCc-CCccChHHhccccccccccCCccEEECCCCC-Ccc--ch
Confidence 2358999999984 55521 12345578999999999875 542111100 0122389999999975 552 22
Q ss_pred HHH--hcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC-----CcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 400 LIG--QQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS-----NITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 400 ~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~-----~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
... ..+++|+.|++++|.++. .+..+..+++|+.|++++|. .+.. .++.....+++|+.|++++|.-
T Consensus 745 ~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~-~ip~~l~~L~~L~~L~Ls~N~L 818 (876)
T 4ecn_A 745 DDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILR-QWPTGITTCPSLIQLQIGSNDI 818 (876)
T ss_dssp GGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCC-CCCTTGGGCSSCCEEECCSSCC
T ss_pred HHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccc-cChHHHhcCCCCCEEECCCCCC
Confidence 222 278999999999999987 34567789999999998742 3332 2344445799999999999864
No 33
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.8e-20 Score=169.81 Aligned_cols=262 Identities=18% Similarity=0.228 Sum_probs=178.6
Q ss_pred HhhCCCCcEEeeccccCCCCcccc----cccCcccCeeeccCCC--CCCh---HHHHHHH---hcCCCCcEEecCCCCcc
Q 012001 198 ALKCQEIRTLDLSYLPITEKCLPP----VVKLQYLEDLVLEGCH--GIDD---DGLASVE---YSCKSLKALNLSKCQNI 265 (473)
Q Consensus 198 ~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~~~--~~~~---~~~~~l~---~~~~~L~~L~l~~~~~~ 265 (473)
...+++|++|++++|.+++..... +..+++|++|++++|. .+.. ..+..+. ..+++|++|+++++. +
T Consensus 28 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l 106 (386)
T 2ca6_A 28 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNA-F 106 (386)
T ss_dssp HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCC-C
T ss_pred HhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCc-C
Confidence 447889999999999887765544 4478899999998862 2222 2222222 237899999998876 3
Q ss_pred chH---HHHHHHhcCcccceeeccccccCchhH----HHhhhCC---------CCCCeeEecCCcCChhHHHHHH---hh
Q 012001 266 SHV---GLSSLIKGADYLQQLILAYSFWVSADL----SKCLHNF---------PMLQSIKFEDCPVARSGIKAIG---NW 326 (473)
Q Consensus 266 ~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~~l~~~---------~~L~~L~l~~~~~~~~~~~~l~---~~ 326 (473)
+.. .+...+..+++|++|+++++. +.... ...+..+ ++|+.|++++|.+++..+..++ ..
T Consensus 107 ~~~~~~~l~~~l~~~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 107 GPTAQEPLIDFLSKHTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp CTTTHHHHHHHHHHCTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 332 344456778899999998874 33322 2333344 8899999999888866665433 26
Q ss_pred CCCCCeEecCCCCCCChHHHHHHH----HhCCCCcEEecCCCCCCCHHHHHH---HHhcCCCCCEEEccCCCCCCHHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVV----QSHKELRKLDITCCRKITYASINS---ITKTCTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~----~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~ 399 (473)
+++|++|++++| .+++.++..++ ..+++|+.|++++|. +++.+... ....+++|+.|++++|. +++.+..
T Consensus 186 ~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~ 262 (386)
T 2ca6_A 186 HRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAA 262 (386)
T ss_dssp CTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHH
T ss_pred CCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHH
Confidence 788999999884 77776644443 467889999998876 66544333 33567889999998865 7776555
Q ss_pred HHHh-----cCccCCeeeecccccChhhhh----hh-hcCCCCCeeecCCCCCcchHH--HHHHHhcCccCCeeecCC
Q 012001 400 LIGQ-----QCQYLEELDITENEVNDEGLK----SI-SRCSKLSSLKLGICSNITDEG--LKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 400 ~~~~-----~~~~L~~L~l~~~~~~~~~~~----~l-~~~~~L~~L~l~~~~~l~~~~--~~~~~~~~~~L~~L~l~~ 465 (473)
.+.. .+++|+.|++++|.+++.++. .+ .++++|+.|++++| .++..+ +..+...+++++.+++..
T Consensus 263 ~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N-~l~~~~~~~~~l~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 263 AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN-RFSEEDDVVDEIREVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS-BSCTTSHHHHHHHHHHHHHTCCEECC
T ss_pred HHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCC-cCCcchhHHHHHHHHhhhcCcchhhh
Confidence 4432 278899999998888885333 33 34788999999988 777655 456666667766555543
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.86 E-value=2.8e-24 Score=218.14 Aligned_cols=374 Identities=17% Similarity=0.082 Sum_probs=218.5
Q ss_pred CCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC
Q 012001 70 YPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA 149 (473)
Q Consensus 70 ~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~ 149 (473)
.++++.|+++++. +...... ....+++|++|+++++........ ..+..+++|++|+++++ .+.......+..+
T Consensus 23 p~~l~~LdLs~N~-i~~i~~~---~~~~l~~L~~LdLs~n~~~~~i~~-~~f~~L~~L~~L~Ls~N-~l~~~~p~~~~~l 96 (844)
T 3j0a_A 23 LNTTERLLLSFNY-IRTVTAS---SFPFLEQLQLLELGSQYTPLTIDK-EAFRNLPNLRILDLGSS-KIYFLHPDAFQGL 96 (844)
T ss_dssp CTTCCEEEEESCC-CCEECSS---SCSSCCSCSEEEECTTCCCCEECT-TTTSSCTTCCEEECTTC-CCCEECTTSSCSC
T ss_pred CCCcCEEECCCCc-CCccChh---HCcccccCeEEeCCCCCCccccCH-HHhcCCCCCCEEECCCC-cCcccCHhHccCC
Confidence 3679999999864 2221111 246779999999998743322212 22348999999999988 4555444678889
Q ss_pred CCCCEEecccCcccCHHHHH-HHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccC--c
Q 012001 150 KNLERLWLARCKLITDLGIG-RIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKL--Q 226 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~--~ 226 (473)
++|++|+++++.. ....+. .....+++|++|+++++. +...........+++|++|++++|.+.......+..+ +
T Consensus 97 ~~L~~L~Ls~n~l-~~~~~~~~~~~~L~~L~~L~Ls~N~-l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~ 174 (844)
T 3j0a_A 97 FHLFELRLYFCGL-SDAVLKDGYFRNLKALTRLDLSKNQ-IRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK 174 (844)
T ss_dssp SSCCCEECTTCCC-SSCCSTTCCCSSCSSCCEEEEESCC-CCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHC
T ss_pred cccCEeeCcCCCC-CcccccCccccccCCCCEEECCCCc-ccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCC
Confidence 9999999998753 321111 112348999999999874 3332222234588999999999998877666666655 8
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCC------CCcEEecCCCCccchH--HHHH--------------------------
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCK------SLKALNLSKCQNISHV--GLSS-------------------------- 272 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~------~L~~L~l~~~~~~~~~--~~~~-------------------------- 272 (473)
+|+.|+++++..... ....+.. ++ .|+.|+++++...... .+..
T Consensus 175 ~L~~L~L~~n~l~~~-~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 175 TLSFFSLAANSLYSR-VSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp SSCCCEECCSBSCCC-CCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred ccceEECCCCccccc-cccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 999999988543221 1111111 22 3889998876321100 0000
Q ss_pred ------HHhc--CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChH
Q 012001 273 ------LIKG--ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (473)
Q Consensus 273 ------~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (473)
.+.+ .++|+.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .++..
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~-~l~~L~~L~Ls~N-~l~~~ 329 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGF-VFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY-GLDNLQVLNLSYN-LLGEL 329 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCC-CCEECSCCSSSCCCCCEEEEESCCCCEECTTTTT-TCSSCCEEEEESC-CCSCC
T ss_pred CCCChhhhhccccCCccEEECCCCc-ccccChhhhhcCCCCCEEECCCCcCCCCChHHhc-CCCCCCEEECCCC-CCCcc
Confidence 0011 2567778877763 3333445567778888888888876654443343 6778888888774 33321
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh---
Q 012001 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE--- 421 (473)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--- 421 (473)
....+..+++|+.|+++++. ++...... ...+++|+.|+++++. ++... .+++|+.|++++|.++..
T Consensus 330 -~~~~~~~l~~L~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~Ls~N~-l~~i~------~~~~L~~L~l~~N~l~~l~~~ 399 (844)
T 3j0a_A 330 -YSSNFYGLPKVAYIDLQKNH-IAIIQDQT-FKFLEKLQTLDLRDNA-LTTIH------FIPSIPDIFLSGNKLVTLPKI 399 (844)
T ss_dssp -CSCSCSSCTTCCEEECCSCC-CCCCCSSC-SCSCCCCCEEEEETCC-SCCCS------SCCSCSEEEEESCCCCCCCCC
T ss_pred -CHHHhcCCCCCCEEECCCCC-CCccChhh-hcCCCCCCEEECCCCC-CCccc------CCCCcchhccCCCCccccccc
Confidence 11224456788888887764 33221111 1356788888887754 33211 255666666666554422
Q ss_pred -----------------hh-hhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 422 -----------------GL-KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 422 -----------------~~-~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
.. ..+..+++|+.|++++| +++..........+++|++|++++|.
T Consensus 400 ~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~L~~L~Ls~N~ 462 (844)
T 3j0a_A 400 NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENM 462 (844)
T ss_dssp CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESC-CCCCCCSSSSSCSCTTCCBCEEESCC
T ss_pred ccccceeecccCccccCchhhhhhcCCccceeeCCCC-cccccccccccccCCccccccCCCCc
Confidence 11 11234556666666666 44421111122235566666666553
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.86 E-value=4e-22 Score=192.12 Aligned_cols=227 Identities=11% Similarity=0.069 Sum_probs=159.4
Q ss_pred CCCCcEEeeccccCCCCccccc-----ccCcccCeeeccCCCC-CChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH
Q 012001 201 CQEIRTLDLSYLPITEKCLPPV-----VKLQYLEDLVLEGCHG-IDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (473)
+++|++|+++++.+.+.....+ .++++|+.+++.++.. +....+..+.. .++|+.|+++++...... ..
T Consensus 246 ~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~-~~~L~~L~l~~n~l~~~~----~~ 320 (520)
T 2z7x_B 246 HTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHML----CP 320 (520)
T ss_dssp TSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHH-TCCCSEEEEESSCCCCCC----CC
T ss_pred hCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccc-cCceeEEEcCCCcccccc----ch
Confidence 4578888888777665555555 6678888888877442 12123333333 367999999987643221 01
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCCh--hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVAR--SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS 352 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 352 (473)
..+++|++|+++++. +....+..+..+++|+.|++++|.+.+ ..+..+. .+++|+.|+++++ .+....-...+..
T Consensus 321 ~~l~~L~~L~Ls~n~-l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~-~l~~L~~L~Ls~N-~l~~~l~~~~~~~ 397 (520)
T 2z7x_B 321 SKISPFLHLDFSNNL-LTDTVFENCGHLTELETLILQMNQLKELSKIAEMTT-QMKSLQQLDISQN-SVSYDEKKGDCSW 397 (520)
T ss_dssp SSCCCCCEEECCSSC-CCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHT-TCTTCCEEECCSS-CCBCCGGGCSCCC
T ss_pred hhCCcccEEEeECCc-cChhhhhhhccCCCCCEEEccCCccCccccchHHHh-hCCCCCEEECCCC-cCCcccccchhcc
Confidence 568999999999984 555567778899999999999999886 3333444 8899999999984 4543111112445
Q ss_pred CCCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 353 HKELRKLDITCCRKITYASINSITKTC-TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 353 ~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
+++|++|++++|. ++.... ..+ ++|+.|++++|. ++ .++.....+++|+.|++++|.++......+..+++
T Consensus 398 l~~L~~L~Ls~N~-l~~~~~----~~l~~~L~~L~Ls~N~-l~--~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~ 469 (520)
T 2z7x_B 398 TKSLLSLNMSSNI-LTDTIF----RCLPPRIKVLDLHSNK-IK--SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTS 469 (520)
T ss_dssp CTTCCEEECCSSC-CCGGGG----GSCCTTCCEEECCSSC-CC--CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CccCCEEECcCCC-CCcchh----hhhcccCCEEECCCCc-cc--ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCc
Confidence 6899999999986 543222 233 799999999965 55 22222228999999999999998765545778999
Q ss_pred CCeeecCCCCCcc
Q 012001 432 LSSLKLGICSNIT 444 (473)
Q Consensus 432 L~~L~l~~~~~l~ 444 (473)
|+.|++++| .++
T Consensus 470 L~~L~l~~N-~~~ 481 (520)
T 2z7x_B 470 LQKIWLHTN-PWD 481 (520)
T ss_dssp CCEEECCSS-CBC
T ss_pred ccEEECcCC-CCc
Confidence 999999999 554
No 36
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=2.4e-20 Score=172.38 Aligned_cols=260 Identities=15% Similarity=0.192 Sum_probs=168.9
Q ss_pred cCCcCceeecccCCCCCHHHHHHH---HhhCCCCcEEeeccccCC---CCccccc-------ccCcccCeeeccCCCCCC
Q 012001 174 CCRKLKLLCLKWCIRVTDLGVELV---ALKCQEIRTLDLSYLPIT---EKCLPPV-------VKLQYLEDLVLEGCHGID 240 (473)
Q Consensus 174 ~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~---~~~~~~l-------~~~~~L~~L~l~~~~~~~ 240 (473)
.+++|++|+++++ .++......+ ...+++|++|+++++.+. +..+..+ ..+++|++|+++++ .++
T Consensus 30 ~~~~L~~L~L~~n-~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~ 107 (386)
T 2ca6_A 30 EDDSVKEIVLSGN-TIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFG 107 (386)
T ss_dssp HCSCCCEEECTTS-EECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCC
T ss_pred cCCCccEEECCCC-CCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCC
Confidence 4788888888886 4666554443 336788888888886332 2222222 46788888888884 455
Q ss_pred hH----HHHHHHhcCCCCcEEecCCCCccchHH---HHHHHhcC---------cccceeeccccccCchhHH---HhhhC
Q 012001 241 DD----GLASVEYSCKSLKALNLSKCQNISHVG---LSSLIKGA---------DYLQQLILAYSFWVSADLS---KCLHN 301 (473)
Q Consensus 241 ~~----~~~~l~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~---------~~L~~L~l~~~~~~~~~~~---~~l~~ 301 (473)
.. ....+.. +++|++|+++++. ++..+ +...+..+ ++|++|+++++.......+ ..+..
T Consensus 108 ~~~~~~l~~~l~~-~~~L~~L~L~~n~-l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 185 (386)
T 2ca6_A 108 PTAQEPLIDFLSK-HTPLEHLYLHNNG-LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQS 185 (386)
T ss_dssp TTTHHHHHHHHHH-CTTCCEEECCSSC-CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CCCCCEEECcCCC-CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHh
Confidence 42 2234444 8888888888876 34332 22223333 7888888888753323333 46667
Q ss_pred CCCCCeeEecCCcCChhHHHHHHh----hCCCCCeEecCCCCCCChHH---HHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGN----WHGSLKELSLSKCSGVTDEE---LSFVVQSHKELRKLDITCCRKITYASINS 374 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (473)
+++|+.|++++|.+.+.+...+.. .+++|+.|++++| .+++.+ ++..+..+++|++|++++|. +++.+...
T Consensus 186 ~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~ 263 (386)
T 2ca6_A 186 HRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA 263 (386)
T ss_dssp CTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred CCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence 888888888888888776555443 6788888888884 565433 34455667888888888876 77665544
Q ss_pred HHh-----cCCCCCEEEccCCCCCCHHHHHH----HHhcCccCCeeeecccccChhh--hhhhh-cCCCCCeeecCCC
Q 012001 375 ITK-----TCTSLTSLRMECCKLVSWEAFVL----IGQQCQYLEELDITENEVNDEG--LKSIS-RCSKLSSLKLGIC 440 (473)
Q Consensus 375 ~~~-----~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~l~~~~~~~~~--~~~l~-~~~~L~~L~l~~~ 440 (473)
+.. .+++|+.|++++|. ++..++.. +..++++|+.|++++|.+++.+ +..+. .+++++.+.+...
T Consensus 264 l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 264 VVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHHHHHHHHHHTCCEECCC
T ss_pred HHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHHHHHHhhhcCcchhhhc
Confidence 433 27888888888865 66643332 3235788888888888888766 34443 3555555555544
No 37
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.85 E-value=3.8e-23 Score=196.97 Aligned_cols=303 Identities=16% Similarity=0.126 Sum_probs=200.3
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCC
Q 012001 124 CRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQE 203 (473)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 203 (473)
.++++.|+++++ .+.......+..+++|++|++.++. +.......+. .+++|++|+++++. +...+.. ....+++
T Consensus 31 ~~~l~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-i~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~~~-~~~~l~~ 105 (477)
T 2id5_A 31 PTETRLLDLGKN-RIKTLNQDEFASFPHLEELELNENI-VSAVEPGAFN-NLFNLRTLGLRSNR-LKLIPLG-VFTGLSN 105 (477)
T ss_dssp CTTCSEEECCSS-CCCEECTTTTTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSC-CCSCCTT-SSTTCTT
T ss_pred CCCCcEEECCCC-ccceECHhHccCCCCCCEEECCCCc-cCEeChhhhh-CCccCCEEECCCCc-CCccCcc-cccCCCC
Confidence 368999999988 4665544567889999999999864 4433222233 38899999998863 3332221 1236789
Q ss_pred CcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccccee
Q 012001 204 IRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQL 283 (473)
Q Consensus 204 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 283 (473)
|++|++++|.+.......+..+++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+.|
T Consensus 106 L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~n~l-~~~~-~~~l~~l~~L~~L 181 (477)
T 2id5_A 106 LTKLDISENKIVILLDYMFQDLYNLKSLEVGDN-DLVYISHRAFSG-LNSLEQLTLEKCNL-TSIP-TEALSHLHGLIVL 181 (477)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEEECCT-TCCEECTTSSTT-CTTCCEEEEESCCC-SSCC-HHHHTTCTTCCEE
T ss_pred CCEEECCCCccccCChhHccccccCCEEECCCC-ccceeChhhccC-CCCCCEEECCCCcC-cccC-hhHhcccCCCcEE
Confidence 999999999887665666778899999999884 344332233444 78899999988763 2221 2335678889999
Q ss_pred eccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCC
Q 012001 284 ILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITC 363 (473)
Q Consensus 284 ~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 363 (473)
+++++. +.......+..+++|+.|+++++........... ...+|++|+++++ .++... ...+..+++|+.|++++
T Consensus 182 ~l~~n~-i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 182 RLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCL-YGLNLTSLSITHC-NLTAVP-YLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp EEESCC-CCEECTTCSCSCTTCCEEEEECCTTCCEECTTTT-TTCCCSEEEEESS-CCCSCC-HHHHTTCTTCCEEECCS
T ss_pred eCCCCc-CcEeChhhcccCcccceeeCCCCccccccCcccc-cCccccEEECcCC-cccccC-HHHhcCccccCeeECCC
Confidence 888763 3333445567788888998888765443333222 3458888888874 444321 23456778888888887
Q ss_pred CCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCc
Q 012001 364 CRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNI 443 (473)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l 443 (473)
+. ++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .+
T Consensus 258 n~-l~~~~~~~~-~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~l 332 (477)
T 2id5_A 258 NP-ISTIEGSML-HELLRLQEIQLVGGQ-LAVVEPYAFR-GLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSN-PL 332 (477)
T ss_dssp SC-CCEECTTSC-TTCTTCCEEECCSSC-CSEECTTTBT-TCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSS-CE
T ss_pred Cc-CCccChhhc-cccccCCEEECCCCc-cceECHHHhc-CcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCC-Cc
Confidence 65 443222112 357788888888754 4433222222 6788888888888887766666677888888888888 44
Q ss_pred c
Q 012001 444 T 444 (473)
Q Consensus 444 ~ 444 (473)
.
T Consensus 333 ~ 333 (477)
T 2id5_A 333 A 333 (477)
T ss_dssp E
T ss_pred c
Confidence 3
No 38
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.85 E-value=1.7e-24 Score=211.52 Aligned_cols=156 Identities=19% Similarity=0.126 Sum_probs=102.7
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCC
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAK 150 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 150 (473)
++++.|+++++.- ...... ....+++|++|+++++. +..... ..+..+++|++|+++++. +...+...+..++
T Consensus 28 ~~l~~L~Ls~n~l-~~~~~~---~~~~l~~L~~L~Ls~n~-i~~i~~-~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~ 100 (570)
T 2z63_A 28 FSTKNLDLSFNPL-RHLGSY---SFFSFPELQVLDLSRCE-IQTIED-GAYQSLSHLSTLILTGNP-IQSLALGAFSGLS 100 (570)
T ss_dssp SSCCEEECCSCCC-CEECTT---TTTTCSSCCEEECTTCC-CCEECT-TTTTTCTTCCEEECTTCC-CCEECTTTTTTCT
T ss_pred ccccEEEccCCcc-CccChh---HhhCCCCceEEECCCCc-CCccCc-ccccCchhCCEEeCcCCc-CCccCHhhhcCcc
Confidence 4699999998742 221111 23567899999999875 332222 223478999999999884 5554445678899
Q ss_pred CCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc--
Q 012001 151 NLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL-- 228 (473)
Q Consensus 151 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L-- 228 (473)
+|++|++.++. +...+...+ ..+++|++|+++++. +....+......+++|++|+++++.+.......+..+++|
T Consensus 101 ~L~~L~L~~n~-l~~l~~~~~-~~l~~L~~L~L~~n~-l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 177 (570)
T 2z63_A 101 SLQKLVAVETN-LASLENFPI-GHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL 177 (570)
T ss_dssp TCCEEECTTSC-CCCSTTCSC-TTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT
T ss_pred ccccccccccc-cccCCCccc-cccccccEEecCCCc-cceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch
Confidence 99999999864 332211112 248999999999864 3321122224478999999999998876555556656666
Q ss_pred --CeeeccCC
Q 012001 229 --EDLVLEGC 236 (473)
Q Consensus 229 --~~L~l~~~ 236 (473)
+.++++++
T Consensus 178 ~~~~L~l~~n 187 (570)
T 2z63_A 178 LNLSLDLSLN 187 (570)
T ss_dssp CCCEEECTTC
T ss_pred hhhhcccCCC
Confidence 56666653
No 39
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=1.4e-22 Score=187.84 Aligned_cols=327 Identities=15% Similarity=0.075 Sum_probs=232.5
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
...++++.++++++. +.... ..+...+++|++|+++++ .+.+.+...+..+++|++|++.++. +.......+ ..+
T Consensus 42 ~~l~~l~~l~l~~~~-l~~l~-~~~~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 116 (390)
T 3o6n_A 42 ITLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNV 116 (390)
T ss_dssp GGGCCCSEEEEESCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTC
T ss_pred cccCCceEEEecCCc-hhhCC-hhHhcccccCcEEECCCC-cccccChhhccCCCCcCEEECCCCC-CCcCCHHHh-cCC
Confidence 346889999998764 22222 233447999999999988 4665554578889999999999875 333222222 338
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +...+.. ....+++|++|++++|.+.......+..+++|++|+++++ .+.... +.. +++|+
T Consensus 117 ~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~---~~~-l~~L~ 189 (390)
T 3o6n_A 117 PLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSL-IPSLF 189 (390)
T ss_dssp TTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCC---GGG-CTTCS
T ss_pred CCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccc---ccc-ccccc
Confidence 999999999864 4432221 1246899999999999887666667888999999999985 444332 333 89999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|+++++.. .. +...++|++|+++++.... . + ...+++|+.|++++|.+.+. ..+ ..+++|++|++
T Consensus 190 ~L~l~~n~l-~~------~~~~~~L~~L~l~~n~l~~-~-~--~~~~~~L~~L~l~~n~l~~~--~~l-~~l~~L~~L~L 255 (390)
T 3o6n_A 190 HANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-R--GPVNVELTILKLQHNNLTDT--AWL-LNYPGLVEVDL 255 (390)
T ss_dssp EEECCSSCC-SE------EECCSSCSEEECCSSCCCE-E-E--CCCCSSCCEEECCSSCCCCC--GGG-GGCTTCSEEEC
T ss_pred eeecccccc-cc------cCCCCcceEEECCCCeeee-c-c--ccccccccEEECCCCCCccc--HHH-cCCCCccEEEC
Confidence 999998763 22 1235689999998874322 1 1 13357999999999998764 233 37899999999
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++.. .+..+..+++|++|+++++. ++.. ......+++|+.|++++|. ++... ..+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~--~~~~~~l~~L~~L~L~~n~-l~~~~-~~~-~~l~~L~~L~L~~ 327 (390)
T 3o6n_A 256 SYN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDH 327 (390)
T ss_dssp CSS-CCCEE-ESGGGTTCSSCCEEECCSSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCS
T ss_pred CCC-cCCCc-ChhHccccccCCEEECCCCc-Cccc--CcccCCCCCCCEEECCCCc-ceecC-ccc-cccCcCCEEECCC
Confidence 984 55532 23345678999999999875 4432 1122468999999999975 54221 112 2679999999999
Q ss_pred cccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCe
Q 012001 416 NEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKE 460 (473)
Q Consensus 416 ~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~ 460 (473)
|.+++.. +..+++|+.|++++| .++......+...++....
T Consensus 328 N~i~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~~~~ 368 (390)
T 3o6n_A 328 NSIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVARPAV 368 (390)
T ss_dssp SCCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCTTTB
T ss_pred CccceeC---chhhccCCEEEcCCC-CccchhHHHHHHHHHhhcc
Confidence 9988764 567899999999999 8888787777766665543
No 40
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.85 E-value=2.4e-22 Score=186.20 Aligned_cols=265 Identities=14% Similarity=0.072 Sum_probs=110.0
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.+++|++|+++++ .+...+...+..+++|++|++.++. +...... +...+++|++|+++++. +...... ....++
T Consensus 91 ~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~L~~n~-l~~~~~~-~~~~l~ 165 (390)
T 3o6n_A 91 YAHTIQKLYMGFN-AIRYLPPHVFQNVPLLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNN-LERIEDD-TFQATT 165 (390)
T ss_dssp TCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CCBCCTT-TTSSCT
T ss_pred CCCCcCEEECCCC-CCCcCCHHHhcCCCCCCEEECCCCc-cCcCCHH-HhcCCCCCcEEECCCCc-cCccChh-hccCCC
Confidence 4555555555554 2333322334455555555555542 2211111 11124555555555432 2111111 112445
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|++|+++++.++.. .+..+++|+.++++++ .+... . ..++|+.|+++++...... ....++|+.
T Consensus 166 ~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n-~l~~~-----~-~~~~L~~L~l~~n~l~~~~-----~~~~~~L~~ 230 (390)
T 3o6n_A 166 SLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN-LLSTL-----A-IPIAVEELDASHNSINVVR-----GPVNVELTI 230 (390)
T ss_dssp TCCEEECCSSCCSBC---CGGGCTTCSEEECCSS-CCSEE-----E-CCSSCSEEECCSSCCCEEE-----CCCCSSCCE
T ss_pred CCCEEECCCCcCCcc---ccccccccceeecccc-ccccc-----C-CCCcceEEECCCCeeeecc-----ccccccccE
Confidence 555555555544432 2233455555555542 22211 1 1345555555544321110 011345555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++.... . ..+..+++|+.|++++|.+.+..+..+. .+++|++|+++++ .++. ++.....+++|+.|+++
T Consensus 231 L~l~~n~l~~-~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~--~~~~~~~l~~L~~L~L~ 303 (390)
T 3o6n_A 231 LKLQHNNLTD-T--AWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISNN-RLVA--LNLYGQPIPTLKVLDLS 303 (390)
T ss_dssp EECCSSCCCC-C--GGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECCSS-CCCE--EECSSSCCTTCCEEECC
T ss_pred EECCCCCCcc-c--HHHcCCCCccEEECCCCcCCCcChhHcc-ccccCCEEECCCC-cCcc--cCcccCCCCCCCEEECC
Confidence 5555542211 1 2344555555555555554443333332 4455555555552 3322 11112234555555555
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG 422 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 422 (473)
+|. ++.. ......+++|+.|++++|. ++... ...+++|+.|++++|.++...
T Consensus 304 ~n~-l~~~--~~~~~~l~~L~~L~L~~N~-i~~~~----~~~~~~L~~L~l~~N~~~~~~ 355 (390)
T 3o6n_A 304 HNH-LLHV--ERNQPQFDRLENLYLDHNS-IVTLK----LSTHHTLKNLTLSHNDWDCNS 355 (390)
T ss_dssp SSC-CCCC--GGGHHHHTTCSEEECCSSC-CCCCC----CCTTCCCSEEECCSSCEEHHH
T ss_pred CCc-ceec--CccccccCcCCEEECCCCc-cceeC----chhhccCCEEEcCCCCccchh
Confidence 543 2211 1111234555555555533 32221 114455555555555555443
No 41
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.84 E-value=5.8e-23 Score=195.72 Aligned_cols=306 Identities=15% Similarity=0.126 Sum_probs=213.8
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
...++++.|+++++. +....... +..+++|++|+++++ .+.......+..+++|++|++.++. +.......+ ..+
T Consensus 29 ~~~~~l~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l 103 (477)
T 2id5_A 29 GIPTETRLLDLGKNR-IKTLNQDE-FASFPHLEELELNEN-IVSAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVF-TGL 103 (477)
T ss_dssp CCCTTCSEEECCSSC-CCEECTTT-TTTCTTCCEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCSCCTTSS-TTC
T ss_pred CCCCCCcEEECCCCc-cceECHhH-ccCCCCCCEEECCCC-ccCEeChhhhhCCccCCEEECCCCc-CCccCcccc-cCC
Confidence 345789999999875 33322222 347999999999988 5665544678889999999999864 443222222 338
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +..... .....+++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+
T Consensus 104 ~~L~~L~Ls~n~-i~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~-l~~L~ 179 (477)
T 2id5_A 104 SNLTKLDISENK-IVILLD-YMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC-NLTSIPTEALSH-LHGLI 179 (477)
T ss_dssp TTCCEEECTTSC-CCEECT-TTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC-CCSSCCHHHHTT-CTTCC
T ss_pred CCCCEEECCCCc-cccCCh-hHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC-cCcccChhHhcc-cCCCc
Confidence 999999999864 332211 12247899999999999887766677889999999999985 455444444555 99999
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|++.++...... ...+..+++|+.|+++++.... ..+.......+|+.|++++|.+.......+. .+++|+.|++
T Consensus 180 ~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L 255 (477)
T 2id5_A 180 VLRLRHLNINAIR--DYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVR-HLVYLRFLNL 255 (477)
T ss_dssp EEEEESCCCCEEC--TTCSCSCTTCCEEEEECCTTCC-EECTTTTTTCCCSEEEEESSCCCSCCHHHHT-TCTTCCEEEC
T ss_pred EEeCCCCcCcEeC--hhhcccCcccceeeCCCCcccc-ccCcccccCccccEEECcCCcccccCHHHhc-CccccCeeEC
Confidence 9999987632211 1124568899999999875443 3333344456999999999998865555554 7899999999
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++... ...+..+++|+.|+++++. ++......+ ..+++|+.|+++++. ++......+ ..+++|+.|++++
T Consensus 256 s~n-~l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~ 329 (477)
T 2id5_A 256 SYN-PISTIE-GSMLHELLRLQEIQLVGGQ-LAVVEPYAF-RGLNYLRVLNVSGNQ-LTTLEESVF-HSVGNLETLILDS 329 (477)
T ss_dssp CSS-CCCEEC-TTSCTTCTTCCEEECCSSC-CSEECTTTB-TTCTTCCEEECCSSC-CSCCCGGGB-SCGGGCCEEECCS
T ss_pred CCC-cCCccC-hhhccccccCCEEECCCCc-cceECHHHh-cCcccCCEEECCCCc-CceeCHhHc-CCCcccCEEEccC
Confidence 984 454321 2234577999999999875 443322222 468999999999964 543222222 3789999999999
Q ss_pred cccCh
Q 012001 416 NEVND 420 (473)
Q Consensus 416 ~~~~~ 420 (473)
|.+..
T Consensus 330 N~l~c 334 (477)
T 2id5_A 330 NPLAC 334 (477)
T ss_dssp SCEEC
T ss_pred CCccC
Confidence 97653
No 42
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.83 E-value=7.3e-22 Score=192.83 Aligned_cols=323 Identities=15% Similarity=0.085 Sum_probs=226.8
Q ss_pred cCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 97 WKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 97 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
...+++.++++++. +.... ..++..+++|+.|+++++ .+...+...+..+++|++|++.++. +.......+ ..++
T Consensus 49 ~l~~l~~l~l~~~~-l~~lp-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~-~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNST-MRKLP-AALLDSFRQVELLNLNDL-QIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVF-QNVP 123 (597)
T ss_dssp GGCCCSEEEESSCE-ESEEC-THHHHHCCCCSEEECTTS-CCCEECTTTTTTCTTCCEEECCSSC-CCCCCTTTT-TTCT
T ss_pred cCCCceEEEeeCCC-CCCcC-HHHHccCCCCcEEECCCC-CCCCCChHHhcCCCCCCEEECCCCc-CCCCCHHHH-cCCC
Confidence 45788999998764 22222 233447999999999988 4666554578889999999999875 443322222 3389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
+|++|+++++. +...+.. .+..+++|++|++++|.+.......+..+++|+.|+++++ .+.... +.. +++|+.
T Consensus 124 ~L~~L~L~~n~-l~~l~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~---~~~-l~~L~~ 196 (597)
T 3oja_B 124 LLTVLVLERND-LSSLPRG-IFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVD---LSL-IPSLFH 196 (597)
T ss_dssp TCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTS-CCSBCC---GGG-CTTCSE
T ss_pred CCCEEEeeCCC-CCCCCHH-HhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCC-CCCCcC---hhh-hhhhhh
Confidence 99999999874 4432221 1247899999999999888766667888999999999985 344332 233 899999
Q ss_pred EecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecC
Q 012001 257 LNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLS 336 (473)
Q Consensus 257 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~ 336 (473)
|+++++.. .. +...++|+.|+++++.... . +. ...++|+.|++++|.+.+. ..+. .+++|+.|+++
T Consensus 197 L~l~~n~l-~~------l~~~~~L~~L~ls~n~l~~-~-~~--~~~~~L~~L~L~~n~l~~~--~~l~-~l~~L~~L~Ls 262 (597)
T 3oja_B 197 ANVSYNLL-ST------LAIPIAVEELDASHNSINV-V-RG--PVNVELTILKLQHNNLTDT--AWLL-NYPGLVEVDLS 262 (597)
T ss_dssp EECCSSCC-SE------EECCTTCSEEECCSSCCCE-E-EC--SCCSCCCEEECCSSCCCCC--GGGG-GCTTCSEEECC
T ss_pred hhcccCcc-cc------ccCCchhheeeccCCcccc-c-cc--ccCCCCCEEECCCCCCCCC--hhhc-cCCCCCEEECC
Confidence 99998763 22 1335689999998874321 1 11 1246899999999998764 2333 78999999999
Q ss_pred CCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeeccc
Q 012001 337 KCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITEN 416 (473)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 416 (473)
++ .++.. .+..+..+++|+.|+++++. ++.. ......+++|+.|++++|. ++... ..+ ..+++|+.|++++|
T Consensus 263 ~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l--~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~-~~l~~L~~L~L~~N 334 (597)
T 3oja_B 263 YN-ELEKI-MYHPFVKMQRLERLYISNNR-LVAL--NLYGQPIPTLKVLDLSHNH-LLHVE-RNQ-PQFDRLENLYLDHN 334 (597)
T ss_dssp SS-CCCEE-ESGGGTTCSSCCEEECTTSC-CCEE--ECSSSCCTTCCEEECCSSC-CCCCG-GGH-HHHTTCSEEECCSS
T ss_pred CC-ccCCC-CHHHhcCccCCCEEECCCCC-CCCC--CcccccCCCCcEEECCCCC-CCccC-ccc-ccCCCCCEEECCCC
Confidence 84 55532 23345678999999999875 4432 2222458999999999975 44211 112 26799999999999
Q ss_pred ccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 417 EVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 417 ~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
.++... +..+++|+.|++++| .++...+..+...+..
T Consensus 335 ~l~~~~---~~~~~~L~~L~l~~N-~~~~~~~~~~~~~~~~ 371 (597)
T 3oja_B 335 SIVTLK---LSTHHTLKNLTLSHN-DWDCNSLRALFRNVAR 371 (597)
T ss_dssp CCCCCC---CCTTCCCSEEECCSS-CEEHHHHHHHTTTCCT
T ss_pred CCCCcC---hhhcCCCCEEEeeCC-CCCChhHHHHHHHHhh
Confidence 887753 567899999999999 8887666666654443
No 43
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=1.4e-20 Score=176.76 Aligned_cols=306 Identities=16% Similarity=0.130 Sum_probs=178.6
Q ss_pred hccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHH
Q 012001 67 SARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAI 146 (473)
Q Consensus 67 ~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l 146 (473)
+..++++++|+++++. +.+. +....+++|++|+++++. +.... ...+++|++|+++++. +... .+
T Consensus 38 ~~~l~~L~~L~Ls~n~-l~~~-----~~l~~l~~L~~L~Ls~n~-l~~~~----~~~l~~L~~L~Ls~N~-l~~~---~~ 102 (457)
T 3bz5_A 38 EEQLATLTSLDCHNSS-ITDM-----TGIEKLTGLTKLICTSNN-ITTLD----LSQNTNLTYLACDSNK-LTNL---DV 102 (457)
T ss_dssp HHHHTTCCEEECCSSC-CCCC-----TTGGGCTTCSEEECCSSC-CSCCC----CTTCTTCSEEECCSSC-CSCC---CC
T ss_pred hhHcCCCCEEEccCCC-cccC-----hhhcccCCCCEEEccCCc-CCeEc----cccCCCCCEEECcCCC-Ccee---ec
Confidence 3456788888888764 2221 123556888888888765 33221 3367888888888774 4443 26
Q ss_pred HcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCc
Q 012001 147 AEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQ 226 (473)
Q Consensus 147 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 226 (473)
..+++|++|+++++. +...+ ...+++|++|+++++. ++..+ ...+++|++|++++|...... .+..++
T Consensus 103 ~~l~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~-l~~l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~ 170 (457)
T 3bz5_A 103 TPLTKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNT-LTEID----VSHNTQLTELDCHLNKKITKL--DVTPQT 170 (457)
T ss_dssp TTCTTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSC-CSCCC----CTTCTTCCEEECTTCSCCCCC--CCTTCT
T ss_pred CCCCcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCc-cceec----cccCCcCCEEECCCCCccccc--ccccCC
Confidence 678888888888764 33322 2337788888887764 33322 336778888888877332222 456678
Q ss_pred ccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCC
Q 012001 227 YLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQ 306 (473)
Q Consensus 227 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~ 306 (473)
+|+.|+++++ .+.... +.. +++|+.|+++++.... .. +..+++|+.|+++++.. .. ++ +..+++|+
T Consensus 171 ~L~~L~ls~n-~l~~l~---l~~-l~~L~~L~l~~N~l~~-~~----l~~l~~L~~L~Ls~N~l-~~-ip--~~~l~~L~ 236 (457)
T 3bz5_A 171 QLTTLDCSFN-KITELD---VSQ-NKLLNRLNCDTNNITK-LD----LNQNIQLTFLDCSSNKL-TE-ID--VTPLTQLT 236 (457)
T ss_dssp TCCEEECCSS-CCCCCC---CTT-CTTCCEEECCSSCCSC-CC----CTTCTTCSEEECCSSCC-SC-CC--CTTCTTCS
T ss_pred cCCEEECCCC-ccceec---ccc-CCCCCEEECcCCcCCe-ec----cccCCCCCEEECcCCcc-cc-cC--ccccCCCC
Confidence 8888888774 344322 333 7788888887765322 21 44567888888877643 22 22 66777888
Q ss_pred eeEecCCcCChhHHHHHHhhCCCCCeEecCC----------CCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHH
Q 012001 307 SIKFEDCPVARSGIKAIGNWHGSLKELSLSK----------CSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSIT 376 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~----------~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 376 (473)
.|++++|.+....+ ..+++|+.|+++. |...... + +..+++|+.|++++|..+....
T Consensus 237 ~L~l~~N~l~~~~~----~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~--~--~~~l~~L~~L~Ls~n~~l~~l~----- 303 (457)
T 3bz5_A 237 YFDCSVNPLTELDV----STLSKLTTLHCIQTDLLEIDLTHNTQLIYF--Q--AEGCRKIKELDVTHNTQLYLLD----- 303 (457)
T ss_dssp EEECCSSCCSCCCC----TTCTTCCEEECTTCCCSCCCCTTCTTCCEE--E--CTTCTTCCCCCCTTCTTCCEEE-----
T ss_pred EEEeeCCcCCCcCH----HHCCCCCEEeccCCCCCEEECCCCccCCcc--c--ccccccCCEEECCCCcccceec-----
Confidence 88888877665331 1445555554433 2111110 0 1233455555555443222111
Q ss_pred hcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 377 KTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
...++|+.|+++ .+++|+.|++++|.++.. .++.+++|+.|++++| ++++
T Consensus 304 ~~~~~L~~L~l~---------------~~~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N-~l~~ 353 (457)
T 3bz5_A 304 CQAAGITELDLS---------------QNPKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNA-HIQD 353 (457)
T ss_dssp CTTCCCSCCCCT---------------TCTTCCEEECTTCCCSCC---CCTTCTTCSEEECCSS-CCCB
T ss_pred cCCCcceEechh---------------hcccCCEEECCCCccccc---ccccCCcCcEEECCCC-CCCC
Confidence 011222222222 446788888888777764 2667788888888887 6663
No 44
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.82 E-value=2.9e-20 Score=174.61 Aligned_cols=304 Identities=19% Similarity=0.128 Sum_probs=203.8
Q ss_pred ccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcC
Q 012001 96 SWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACC 175 (473)
Q Consensus 96 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 175 (473)
..+++|++|+++++. +... +.+ ..+++|++|+++++ .++..+ +..+++|++|+++++. +...+ ...+
T Consensus 39 ~~l~~L~~L~Ls~n~-l~~~--~~l-~~l~~L~~L~Ls~n-~l~~~~---~~~l~~L~~L~Ls~N~-l~~~~----~~~l 105 (457)
T 3bz5_A 39 EQLATLTSLDCHNSS-ITDM--TGI-EKLTGLTKLICTSN-NITTLD---LSQNTNLTYLACDSNK-LTNLD----VTPL 105 (457)
T ss_dssp HHHTTCCEEECCSSC-CCCC--TTG-GGCTTCSEEECCSS-CCSCCC---CTTCTTCSEEECCSSC-CSCCC----CTTC
T ss_pred hHcCCCCEEEccCCC-cccC--hhh-cccCCCCEEEccCC-cCCeEc---cccCCCCCEEECcCCC-Cceee----cCCC
Confidence 345889999998874 3322 233 37899999999988 455532 6778899999998875 33332 2348
Q ss_pred CcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCc
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLK 255 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~ 255 (473)
++|++|+++++. +...+ ...+++|++|++++|.+++. .+..+++|++|+++++..++... +.. +++|+
T Consensus 106 ~~L~~L~L~~N~-l~~l~----~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~~---~~~-l~~L~ 173 (457)
T 3bz5_A 106 TKLTYLNCDTNK-LTKLD----VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKLD---VTP-QTQLT 173 (457)
T ss_dssp TTCCEEECCSSC-CSCCC----CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCCC---CTT-CTTCC
T ss_pred CcCCEEECCCCc-CCeec----CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcccccc---ccc-CCcCC
Confidence 889999998864 33332 34778899999988877653 36678888888888865554432 333 78888
Q ss_pred EEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEec
Q 012001 256 ALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSL 335 (473)
Q Consensus 256 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l 335 (473)
.|+++++.. +... +..+++|+.|+++++.... . .+..+++|+.|++++|.+.+.. +. .+++|+.|++
T Consensus 174 ~L~ls~n~l-~~l~----l~~l~~L~~L~l~~N~l~~-~---~l~~l~~L~~L~Ls~N~l~~ip---~~-~l~~L~~L~l 240 (457)
T 3bz5_A 174 TLDCSFNKI-TELD----VSQNKLLNRLNCDTNNITK-L---DLNQNIQLTFLDCSSNKLTEID---VT-PLTQLTYFDC 240 (457)
T ss_dssp EEECCSSCC-CCCC----CTTCTTCCEEECCSSCCSC-C---CCTTCTTCSEEECCSSCCSCCC---CT-TCTTCSEEEC
T ss_pred EEECCCCcc-ceec----cccCCCCCEEECcCCcCCe-e---ccccCCCCCEEECcCCcccccC---cc-ccCCCCEEEe
Confidence 888887763 2221 4567888888888774322 2 3667788888888888776632 22 6788888888
Q ss_pred CCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 336 SKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
+++ .++... ...+++|+.|++++ .+|+.|++++|....... ...|++|+.|++++
T Consensus 241 ~~N-~l~~~~----~~~l~~L~~L~l~~----------------n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~ 295 (457)
T 3bz5_A 241 SVN-PLTELD----VSTLSKLTTLHCIQ----------------TDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTH 295 (457)
T ss_dssp CSS-CCSCCC----CTTCTTCCEEECTT----------------CCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTT
T ss_pred eCC-cCCCcC----HHHCCCCCEEeccC----------------CCCCEEECCCCccCCccc----ccccccCCEEECCC
Confidence 873 444321 34567777777654 246666676665443322 12678888888888
Q ss_pred cccChhhhh--------hhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 416 NEVNDEGLK--------SISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 416 ~~~~~~~~~--------~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|........ .++.+++|+.|++++| +++. ++ ...|++|+.|+++++.
T Consensus 296 n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N-~l~~--l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 296 NTQLYLLDCQAAGITELDLSQNPKLVYLYLNNT-ELTE--LD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CTTCCEEECTTCCCSCCCCTTCTTCCEEECTTC-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred CcccceeccCCCcceEechhhcccCCEEECCCC-cccc--cc--cccCCcCcEEECCCCC
Confidence 743222111 1446789999999999 8885 32 4589999999998865
No 45
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.81 E-value=3e-21 Score=188.48 Aligned_cols=56 Identities=18% Similarity=0.126 Sum_probs=24.7
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
++|+.|+++++.... +..+..+++|+.|++++|.+....+..+. .+++|+.|++++
T Consensus 232 ~~L~~L~L~~n~l~~---~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~L~~L~Ls~ 287 (597)
T 3oja_B 232 VELTILKLQHNNLTD---TAWLLNYPGLVEVDLSYNELEKIMYHPFV-KMQRLERLYISN 287 (597)
T ss_dssp SCCCEEECCSSCCCC---CGGGGGCTTCSEEECCSSCCCEEESGGGT-TCSSCCEEECTT
T ss_pred CCCCEEECCCCCCCC---ChhhccCCCCCEEECCCCccCCCCHHHhc-CccCCCEEECCC
Confidence 345555554442211 13344455555555555544433333332 344555555554
No 46
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.81 E-value=1.6e-20 Score=182.50 Aligned_cols=349 Identities=15% Similarity=0.085 Sum_probs=223.8
Q ss_pred HHHhccCCCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHH-
Q 012001 64 SRTSARYPFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAA- 142 (473)
Q Consensus 64 ~~~~~~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~- 142 (473)
+..+..+++|++|+++++. +...... ....+++|++|+++++. +.. ++.. .+++|++|+++++. +...+
T Consensus 69 ~~~~~~l~~L~~L~Ls~N~-l~~~~~~---~~~~l~~L~~L~Ls~N~-l~~--lp~~--~l~~L~~L~Ls~N~-l~~l~~ 138 (562)
T 3a79_B 69 MPDISFLSELRVLRLSHNR-IRSLDFH---VFLFNQDLEYLDVSHNR-LQN--ISCC--PMASLRHLDLSFND-FDVLPV 138 (562)
T ss_dssp GGGTTTCTTCCEEECCSCC-CCEECTT---TTTTCTTCCEEECTTSC-CCE--ECSC--CCTTCSEEECCSSC-CSBCCC
T ss_pred hhhhccCCCccEEECCCCC-CCcCCHH---HhCCCCCCCEEECCCCc-CCc--cCcc--ccccCCEEECCCCC-ccccCc
Confidence 3567889999999999874 3322111 23567999999999876 332 1111 68999999999984 54432
Q ss_pred HHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcC--ceeecccCCC--CCH---------------------------
Q 012001 143 AAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKL--KLLCLKWCIR--VTD--------------------------- 191 (473)
Q Consensus 143 ~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L--~~L~l~~~~~--~~~--------------------------- 191 (473)
...+.++++|++|+++++. +....+.. +++| +.|+++++.. ...
T Consensus 139 p~~~~~l~~L~~L~L~~n~-l~~~~~~~----l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~ 213 (562)
T 3a79_B 139 CKEFGNLTKLTFLGLSAAK-FRQLDLLP----VAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQV 213 (562)
T ss_dssp CGGGGGCTTCCEEEEECSB-CCTTTTGG----GTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCC
T ss_pred hHhhcccCcccEEecCCCc-cccCchhh----hhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhhh
Confidence 2468889999999999965 44433322 5566 9999988643 000
Q ss_pred -------------------------HHHHHHHhhC---------------------------CCCcEEeeccccCCCCcc
Q 012001 192 -------------------------LGVELVALKC---------------------------QEIRTLDLSYLPITEKCL 219 (473)
Q Consensus 192 -------------------------~~~~~~~~~~---------------------------~~L~~L~l~~~~~~~~~~ 219 (473)
.......... ++|++|+++++.+.+...
T Consensus 214 ~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip 293 (562)
T 3a79_B 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERID 293 (562)
T ss_dssp EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCC
T ss_pred hhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeecccc
Confidence 0000001112 255556666555543333
Q ss_pred ccc-----ccCcccCeeeccCCC-CCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCch
Q 012001 220 PPV-----VKLQYLEDLVLEGCH-GIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSA 293 (473)
Q Consensus 220 ~~l-----~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 293 (473)
..+ .+++.|+.+++..+. .+....+..+.. .++|+.|+++++...... ....+++|++|+++++. +..
T Consensus 294 ~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~-~~~L~~L~l~~n~~~~~~----~~~~l~~L~~L~l~~n~-l~~ 367 (562)
T 3a79_B 294 REEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFA-EMNIKMLSISDTPFIHMV----CPPSPSSFTFLNFTQNV-FTD 367 (562)
T ss_dssp CCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHH-TCCCSEEEEESSCCCCCC----CCSSCCCCCEEECCSSC-CCT
T ss_pred chhhhcccccchheehhhcccceeecChhhhhhhhc-cCcceEEEccCCCccccc----CccCCCCceEEECCCCc-ccc
Confidence 333 233333333333321 122233333333 467888888877632211 01467899999999884 555
Q ss_pred hHHHhhhCCCCCCeeEecCCcCChh--HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHH
Q 012001 294 DLSKCLHNFPMLQSIKFEDCPVARS--GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYAS 371 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 371 (473)
..+..+..+++|+.|++++|.+... ....+. .+++|+.|+++++ .++...-...+..+++|+.|+++++. ++...
T Consensus 368 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~-~l~~L~~L~l~~N-~l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~ 444 (562)
T 3a79_B 368 SVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK-NMSSLETLDVSLN-SLNSHAYDRTCAWAESILVLNLSSNM-LTGSV 444 (562)
T ss_dssp TTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTT-TCTTCCEEECTTS-CCBSCCSSCCCCCCTTCCEEECCSSC-CCGGG
T ss_pred chhhhhcccCCCCEEECCCCCcCCcccchhhhc-CCCCCCEEECCCC-cCCCccChhhhcCcccCCEEECCCCC-CCcch
Confidence 5667788999999999999998763 223333 7899999999984 44321011124467899999999986 55322
Q ss_pred HHHHHhcC-CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 372 INSITKTC-TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 372 ~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ..+ ++|+.|+++++. ++. ++.....+++|+.|++++|.++......+..+++|+.|++++| .+.
T Consensus 445 ~----~~l~~~L~~L~L~~N~-l~~--ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N-~~~ 510 (562)
T 3a79_B 445 F----RCLPPKVKVLDLHNNR-IMS--IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN-PWD 510 (562)
T ss_dssp G----SSCCTTCSEEECCSSC-CCC--CCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSC-CBC
T ss_pred h----hhhcCcCCEEECCCCc-Ccc--cChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCC-CcC
Confidence 1 234 699999999964 552 2221227899999999999999755444778999999999999 443
No 47
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.79 E-value=2.4e-21 Score=191.90 Aligned_cols=135 Identities=15% Similarity=0.089 Sum_probs=84.6
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+++++.++++.+ .+... ....+..++.|+.|+++++...... .......+++|+.|++++|. ++......+. ++
T Consensus 443 ~l~~l~~l~ls~n-~l~~~-~~~~~~~~~~L~~L~Ls~N~~~~~~-~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~f~-~l 517 (635)
T 4g8a_A 443 SLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SL 517 (635)
T ss_dssp TCTTCCEEECTTS-CCEEC-CTTTTTTCTTCCEEECTTCEEGGGE-ECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TC
T ss_pred ccccccccccccc-ccccc-cccccccchhhhhhhhhhccccccc-CchhhhhccccCEEECCCCc-cCCcChHHHc-CC
Confidence 4556666666652 22211 1222445678888888876532211 11122457888888888864 5433222222 78
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcC-ccCCeeecCCCC
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTC-SMLKELDLYRFV 467 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~-~~L~~L~l~~c~ 467 (473)
++|++|++++|.++......+..+++|+.|++++| +++......+. .+ ++|++|++++||
T Consensus 518 ~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l~-~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 518 SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIMTSKKQELQ-HFPSSLAFLNLTQND 578 (635)
T ss_dssp TTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTS-CCCBCCSSCTT-CCCTTCCEEECTTCC
T ss_pred CCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCC-cCCCCCHHHHH-hhhCcCCEEEeeCCC
Confidence 88999999888888777667778888999999888 77643222232 44 578888888765
No 48
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.76 E-value=9.9e-18 Score=153.17 Aligned_cols=246 Identities=15% Similarity=0.127 Sum_probs=168.0
Q ss_pred HHHHHhhCCCCcEEeeccccCCCCcc----cccccCc-ccCeeeccCCCCCChHHHHHHHh---c-CCCCcEEecCCCCc
Q 012001 194 VELVALKCQEIRTLDLSYLPITEKCL----PPVVKLQ-YLEDLVLEGCHGIDDDGLASVEY---S-CKSLKALNLSKCQN 264 (473)
Q Consensus 194 ~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~~~~~~~~~~~~l~~---~-~~~L~~L~l~~~~~ 264 (473)
+..+....++|++|++++|.+++... ..+..++ +|++|++++| .+++.....+.. . .++|++|+++++.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 33444455669999999998887776 5566788 8999999985 555544444443 1 2899999999887
Q ss_pred cch---HHHHHHHhcC-cccceeeccccccCchhHH----HhhhC-CCCCCeeEecCCcCChhHHHHHHh---hCC-CCC
Q 012001 265 ISH---VGLSSLIKGA-DYLQQLILAYSFWVSADLS----KCLHN-FPMLQSIKFEDCPVARSGIKAIGN---WHG-SLK 331 (473)
Q Consensus 265 ~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~----~~l~~-~~~L~~L~l~~~~~~~~~~~~l~~---~~~-~L~ 331 (473)
+++ ..+...+... ++|++|+++++. +..... ..+.. .++|+.|++++|.+++.+...+.. ..+ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 332 2344445555 799999999885 333322 33444 369999999999988766555532 344 899
Q ss_pred eEecCCCCCCCh---HHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHH---hc-CCCCCEEEccCCCCCCHHHH---HH
Q 012001 332 ELSLSKCSGVTD---EELSFVVQSH-KELRKLDITCCRKITYASINSIT---KT-CTSLTSLRMECCKLVSWEAF---VL 400 (473)
Q Consensus 332 ~L~l~~~~~~~~---~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~---~~-~~~L~~L~l~~~~~~~~~~~---~~ 400 (473)
+|++++| .+++ ..+...+..+ ++|++|++++|. +++.+...+. .. .++|+.|++++|. +++.+. ..
T Consensus 171 ~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~ 247 (362)
T 3goz_A 171 SLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKL 247 (362)
T ss_dssp EEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHH
T ss_pred EeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHH
Confidence 9999985 4443 3344455566 499999999876 6654333222 23 4689999999864 666444 34
Q ss_pred HHhcCccCCeeeecccc---cChhhhhhhh----cCCCCCeeecCCCCCcchH
Q 012001 401 IGQQCQYLEELDITENE---VNDEGLKSIS----RCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 401 ~~~~~~~L~~L~l~~~~---~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~ 446 (473)
+...+++|+.|++++|. +++.+...+. .+++|+.|++++| .+.+.
T Consensus 248 ~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N-~l~~~ 299 (362)
T 3goz_A 248 LKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK-EIHPS 299 (362)
T ss_dssp TTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSC-BCCGG
T ss_pred HHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCC-cCCCc
Confidence 44567899999999987 5555554443 4678889999999 77764
No 49
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.75 E-value=8.2e-21 Score=169.71 Aligned_cols=252 Identities=14% Similarity=0.189 Sum_probs=140.8
Q ss_pred CCcEEeeccccCCC--CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 203 EIRTLDLSYLPITE--KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 203 ~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++.|+++++.+.+ .....+.++++|++|++++++.+.......+.. +++|++|+++++..... +...+..+++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~-l~~L~~L~Ls~n~l~~~--~p~~~~~l~~L 127 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAK-LTQLHYLYITHTNVSGA--IPDFLSQIKTL 127 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGG-CTTCSEEEEEEECCEEE--CCGGGGGCTTC
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhc-CCCCCEEECcCCeeCCc--CCHHHhCCCCC
Confidence 45555555555544 344445555555555555322222111222333 55566666555442111 11123445666
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCC-CCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG-SLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
++|+++++. +....+..+..+++|+.|++++|.+....+..+. .++ +|+.|+++++ .++.. ++..+..++ |+.|
T Consensus 128 ~~L~Ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~-~l~~~L~~L~L~~N-~l~~~-~~~~~~~l~-L~~L 202 (313)
T 1ogq_A 128 VTLDFSYNA-LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG-SFSKLFTSMTISRN-RLTGK-IPPTFANLN-LAFV 202 (313)
T ss_dssp CEEECCSSE-EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGG-CCCTTCCEEECCSS-EEEEE-CCGGGGGCC-CSEE
T ss_pred CEEeCCCCc-cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHh-hhhhcCcEEECcCC-eeecc-CChHHhCCc-ccEE
Confidence 666666552 2333445556666777777777666544444443 344 6777777663 22211 122233444 7777
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
+++++. ++.. .......+++|+.|+++++. ++... .. ...+++|++|++++|.+++..+..+..+++|+.|++++
T Consensus 203 ~Ls~N~-l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~-~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~ 277 (313)
T 1ogq_A 203 DLSRNM-LEGD-ASVLFGSDKNTQKIHLAKNS-LAFDL-GK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSF 277 (313)
T ss_dssp ECCSSE-EEEC-CGGGCCTTSCCSEEECCSSE-ECCBG-GG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCS
T ss_pred ECcCCc-ccCc-CCHHHhcCCCCCEEECCCCc-eeeec-Cc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcC
Confidence 777654 3221 11222457788888887754 33111 11 23678899999999888877777788888999999999
Q ss_pred CCCcchHHHHHHHhcCccCCeeecCCCCCcc
Q 012001 440 CSNITDEGLKHVGSTCSMLKELDLYRFVTFH 470 (473)
Q Consensus 440 ~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l~ 470 (473)
| .++.. ++.. ..+++|+.+++.+++.+.
T Consensus 278 N-~l~~~-ip~~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 278 N-NLCGE-IPQG-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-EEEEE-CCCS-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccc-CCCC-ccccccChHHhcCCCCcc
Confidence 8 77632 3333 478889999998888654
No 50
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.74 E-value=8.3e-19 Score=159.99 Aligned_cols=236 Identities=16% Similarity=0.098 Sum_probs=147.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+++.....+.++++|++|+++++ .+.......+.. +++|++|+++++... .......+..+++
T Consensus 74 ~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~-~l~~~~~~~~l~~ 150 (353)
T 2z80_A 74 RCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN-YLSNLSSSWFKP-LSSLTFLNLLGNPYK-TLGETSLFSHLTK 150 (353)
T ss_dssp TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS-CCSSCCHHHHTT-CTTCSEEECTTCCCS-SSCSSCSCTTCTT
T ss_pred cCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCC-cCCcCCHhHhCC-CccCCEEECCCCCCc-ccCchhhhccCCC
Confidence 5566777777766665444445666677777777763 343333333443 677777777766422 1110012345677
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++..+....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++|+.|
T Consensus 151 L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L 227 (353)
T 2z80_A 151 LQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLK-SIQNVSHLILHMK-QHILLL-EIFVDVTSSVECL 227 (353)
T ss_dssp CCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTT-TCSEEEEEEEECS-CSTTHH-HHHHHHTTTEEEE
T ss_pred CcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHh-ccccCCeecCCCC-ccccch-hhhhhhcccccEE
Confidence 888887776444444445667778888888888776654444444 5677888888774 444322 2334457888888
Q ss_pred ecCCCCCCCHHHHHH--HHhcCCCCCEEEccCCCCCCHHHHHH---HHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 360 DITCCRKITYASINS--ITKTCTSLTSLRMECCKLVSWEAFVL---IGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+++++. ++...... .....+.++.+++.++. +++..+.. ....+++|+.|++++|.++......+..+++|+.
T Consensus 228 ~L~~n~-l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~ 305 (353)
T 2z80_A 228 ELRDTD-LDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQK 305 (353)
T ss_dssp EEESCB-CTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred ECCCCc-cccccccccccccccchhhcccccccc-ccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCE
Confidence 888765 33221111 12346788899998854 66654433 2347899999999999998665444678999999
Q ss_pred eecCCCCCcc
Q 012001 435 LKLGICSNIT 444 (473)
Q Consensus 435 L~l~~~~~l~ 444 (473)
|++++| .++
T Consensus 306 L~L~~N-~~~ 314 (353)
T 2z80_A 306 IWLHTN-PWD 314 (353)
T ss_dssp EECCSS-CBC
T ss_pred EEeeCC-Ccc
Confidence 999999 554
No 51
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.73 E-value=7.5e-17 Score=147.36 Aligned_cols=254 Identities=14% Similarity=0.133 Sum_probs=177.7
Q ss_pred HHHHHhcCCcCceeecccCCCCCHHHH---HHHHhhCC-CCcEEeeccccCCCCcccccccC-----cccCeeeccCCCC
Q 012001 168 IGRIAACCRKLKLLCLKWCIRVTDLGV---ELVALKCQ-EIRTLDLSYLPITEKCLPPVVKL-----QYLEDLVLEGCHG 238 (473)
Q Consensus 168 ~~~~~~~~~~L~~L~l~~~~~~~~~~~---~~~~~~~~-~L~~L~l~~~~~~~~~~~~l~~~-----~~L~~L~l~~~~~ 238 (473)
+..+....++|++|+++++. +++.+. ......++ +|++|++++|.+++.....+..+ ++|++|++++|.
T Consensus 14 ~~~~~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~- 91 (362)
T 3goz_A 14 VEEFTSIPHGVTSLDLSLNN-LYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNF- 91 (362)
T ss_dssp HHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSC-
T ss_pred HHHHHhCCCCceEEEccCCC-CChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCc-
Confidence 34455546669999999875 444433 33445677 89999999999988777777654 999999999964
Q ss_pred CChHHHHHHHh---cC-CCCcEEecCCCCccchHH---HHHHHhc-CcccceeeccccccCc---hhHHHhhhCCC-CCC
Q 012001 239 IDDDGLASVEY---SC-KSLKALNLSKCQNISHVG---LSSLIKG-ADYLQQLILAYSFWVS---ADLSKCLHNFP-MLQ 306 (473)
Q Consensus 239 ~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~---~~~~~~l~~~~-~L~ 306 (473)
+++.....+.. .+ ++|++|+++++. +++.+ +...+.. .++|++|+++++.... ..+...+..++ +|+
T Consensus 92 l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~ 170 (362)
T 3goz_A 92 LSYKSSDELVKTLAAIPFTITVLDLGWND-FSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVN 170 (362)
T ss_dssp GGGSCHHHHHHHHHTSCTTCCEEECCSSC-GGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCC
T ss_pred CChHHHHHHHHHHHhCCCCccEEECcCCc-CCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCcccc
Confidence 54433333322 24 899999999987 44433 3333444 3699999999884321 24455566666 999
Q ss_pred eeEecCCcCChhHHHHHHh---hC-CCCCeEecCCCCCCChHH---HHHHHHh-CCCCcEEecCCCCCCCHHHH---HHH
Q 012001 307 SIKFEDCPVARSGIKAIGN---WH-GSLKELSLSKCSGVTDEE---LSFVVQS-HKELRKLDITCCRKITYASI---NSI 375 (473)
Q Consensus 307 ~L~l~~~~~~~~~~~~l~~---~~-~~L~~L~l~~~~~~~~~~---~~~~~~~-~~~L~~L~l~~~~~~~~~~~---~~~ 375 (473)
.|++++|.+++.....++. .+ ++|++|+++++ .+++.+ +...+.. .++|++|++++|. +++.+. ...
T Consensus 171 ~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~ 248 (362)
T 3goz_A 171 SLNLRGNNLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLL 248 (362)
T ss_dssp EEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHT
T ss_pred EeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHH
Confidence 9999999988766655442 45 59999999984 565532 4444545 4699999999885 666444 344
Q ss_pred HhcCCCCCEEEccCCC--CCCHHHHHHHHh---cCccCCeeeecccccChhhhhhh
Q 012001 376 TKTCTSLTSLRMECCK--LVSWEAFVLIGQ---QCQYLEELDITENEVNDEGLKSI 426 (473)
Q Consensus 376 ~~~~~~L~~L~l~~~~--~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l 426 (473)
...+++|+.|++++|. .+++.++..+.. .+++|+.|++++|.+.+.....+
T Consensus 249 ~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~~~ 304 (362)
T 3goz_A 249 KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSIPI 304 (362)
T ss_dssp TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCHHH
T ss_pred HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchHHH
Confidence 4567999999999875 466676666654 45678889999999988754443
No 52
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.71 E-value=3.1e-19 Score=159.99 Aligned_cols=246 Identities=13% Similarity=0.052 Sum_probs=129.7
Q ss_pred HHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHH
Q 012001 169 GRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVE 248 (473)
Q Consensus 169 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~ 248 (473)
..+...+++|++|+++++. +....... ...+++|++|++++|.+++ ...+..+++|++|+++++. +.. +.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~Ls~n~l~~--~~~~~~l~~L~~L~Ls~n~-l~~-----l~ 96 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNP-LSQISAAD-LAPFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNY-VQE-----LL 96 (317)
T ss_dssp HHHHTTGGGCSEEECTTSC-CCCCCHHH-HTTCTTCCEEECTTSCCEE--EEEETTCTTCCEEECCSSE-EEE-----EE
T ss_pred HHHhccCCCCCEEECcCCc-cCcCCHHH-hhCCCcCCEEECCCCcCCc--chhhhhcCCCCEEECcCCc-ccc-----cc
Confidence 3344446677777777753 33322222 2367777777777776643 2236667777777777642 221 11
Q ss_pred hcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCC
Q 012001 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHG 328 (473)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 328 (473)
. .++|++|+++++... ... ...+++|++|+++++. +....+..+..+++|+.|++++|.+....+..+...++
T Consensus 97 ~-~~~L~~L~l~~n~l~-~~~----~~~~~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~ 169 (317)
T 3o53_A 97 V-GPSIETLHAANNNIS-RVS----CSRGQGKKNIYLANNK-ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSD 169 (317)
T ss_dssp E-CTTCCEEECCSSCCS-EEE----ECCCSSCEEEECCSSC-CCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTT
T ss_pred C-CCCcCEEECCCCccC-CcC----ccccCCCCEEECCCCC-CCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccC
Confidence 1 466666666665421 111 1124555555555542 22222233444555555555555544433333322344
Q ss_pred CCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccC
Q 012001 329 SLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYL 408 (473)
Q Consensus 329 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 408 (473)
+|++|++++ +. ++.. ... ..+++|+.|+++++. ++.... . ...+++|
T Consensus 170 ~L~~L~L~~--------------------------N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~l~~-~-~~~l~~L 216 (317)
T 3o53_A 170 TLEHLNLQY--------------------------NF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-E-FQSAAGV 216 (317)
T ss_dssp TCCEEECTT--------------------------SC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-G-GGGGTTC
T ss_pred cCCEEECCC--------------------------Cc-Cccc--ccc-cccccCCEEECCCCc-CCcchh-h-hcccCcc
Confidence 444444444 43 2211 000 125666666666643 332111 1 2266777
Q ss_pred CeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 409 EELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 409 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
+.|++++|.++.. ...+..+++|+.|++++| .++...+..+...+++|+.+++.+|
T Consensus 217 ~~L~L~~N~l~~l-~~~~~~l~~L~~L~l~~N-~~~~~~~~~~~~~~~~L~~l~l~~~ 272 (317)
T 3o53_A 217 TWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-GFHCGTLRDFFSKNQRVQTVAKQTV 272 (317)
T ss_dssp SEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-CCBHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cEEECcCCcccch-hhHhhcCCCCCEEEccCC-CccCcCHHHHHhccccceEEECCCc
Confidence 7777777777643 234556777888888887 6664456666667777777766643
No 53
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=7.5e-18 Score=152.16 Aligned_cols=272 Identities=16% Similarity=0.104 Sum_probs=188.5
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.+.|+.|+++++. ++...... ...+++|++|+++++.++......+..+++|++|+++++ .+..... ...++|
T Consensus 51 ~~~l~~L~L~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n-~l~~l~~----~~~~~L 123 (330)
T 1xku_A 51 PPDTALLDLQNNK-ITEIKDGD-FKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKN-QLKELPE----KMPKTL 123 (330)
T ss_dssp CTTCCEEECCSSC-CCCBCTTT-TTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSS-CCSBCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCEeChhh-hccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCC-cCCccCh----hhcccc
Confidence 4689999999864 44332212 247899999999999888766778889999999999985 3442211 114789
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCc-hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeE
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (473)
++|+++++.... .. ...+..+++|+.|+++++.... ...+..+..+++|+.|+++++.+..... . ..++|++|
T Consensus 124 ~~L~l~~n~l~~-~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l~~-~---~~~~L~~L 197 (330)
T 1xku_A 124 QELRVHENEITK-VR-KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ-G---LPPSLTEL 197 (330)
T ss_dssp CEEECCSSCCCB-BC-HHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCS-S---CCTTCSEE
T ss_pred cEEECCCCcccc-cC-HhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccCCc-c---ccccCCEE
Confidence 999999876332 21 2346778999999999875421 1344567889999999999998764211 1 23799999
Q ss_pred ecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeee
Q 012001 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (473)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (473)
+++++ .++.. ....+..+++|++|+++++. ++......+ ..+++|+.|++++|. ++. +......+++|+.|++
T Consensus 198 ~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 270 (330)
T 1xku_A 198 HLDGN-KITKV-DAASLKGLNNLAKLGLSFNS-ISAVDNGSL-ANTPHLRELHLNNNK-LVK--VPGGLADHKYIQVVYL 270 (330)
T ss_dssp ECTTS-CCCEE-CTGGGTTCTTCCEEECCSSC-CCEECTTTG-GGSTTCCEEECCSSC-CSS--CCTTTTTCSSCCEEEC
T ss_pred ECCCC-cCCcc-CHHHhcCCCCCCEEECCCCc-CceeChhhc-cCCCCCCEEECCCCc-Ccc--CChhhccCCCcCEEEC
Confidence 99984 55532 12345678999999999875 443322222 468999999999975 442 2212237899999999
Q ss_pred cccccChhhhhhhhc------CCCCCeeecCCCCCcchHHHH-HHHhcCccCCeeecCCCC
Q 012001 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDEGLK-HVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~~~~-~~~~~~~~L~~L~l~~c~ 467 (473)
++|.++..+...+.. .+.++.|++++| .+....+. .....+++++.+++++|.
T Consensus 271 ~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N-~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 271 HNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN-PVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSS-SSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CCCcCCccChhhcCCcccccccccccceEeecC-cccccccCccccccccceeEEEecccC
Confidence 999998877666542 478999999999 55532222 334468899999998873
No 54
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.69 E-value=1.2e-18 Score=172.57 Aligned_cols=138 Identities=17% Similarity=0.095 Sum_probs=96.4
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++++.++++.+.+.......+. .+++|+.|+++++.... ...+..+..+++|+.|++++|. ++...... ..
T Consensus 440 ~~~~l~~l~~l~ls~n~l~~~~~~~~~-~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N~-L~~l~~~~-f~ 515 (635)
T 4g8a_A 440 VFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQCQ-LEQLSPTA-FN 515 (635)
T ss_dssp TTTTCTTCCEEECTTSCCEECCTTTTT-TCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTSC-CCEECTTT-TT
T ss_pred ccccccccccccccccccccccccccc-cchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCCc-cCCcChHH-Hc
Confidence 455667788888887765433332222 67899999999853222 1122335677999999999885 55332222 25
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC-CCCCeeecCCCC
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC-SKLSSLKLGICS 441 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~-~~L~~L~l~~~~ 441 (473)
.+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+ ++|+.|++++|+
T Consensus 516 ~l~~L~~L~Ls~N~-l~~l~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 516 SLSSLQVLNMSHNN-FFSLDTFPYK-CLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp TCTTCCEEECTTSC-CCBCCCGGGT-TCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CCCCCCEEECCCCc-CCCCChhHHh-CCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 78999999999964 5432222222 78999999999999998877778777 689999999873
No 55
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.69 E-value=1.7e-18 Score=156.48 Aligned_cols=36 Identities=11% Similarity=0.019 Sum_probs=24.2
Q ss_pred CccCCeeeecccccChh--hhhhhhcCCCCCeeecCCC
Q 012001 405 CQYLEELDITENEVNDE--GLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 405 ~~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~~ 440 (473)
.+.|+.|++.+|.+... ....+..+++++.+++++|
T Consensus 292 ~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 292 KASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp SCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred cccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 46788899998877643 2344556888999999887
No 56
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.68 E-value=9.8e-19 Score=156.23 Aligned_cols=231 Identities=19% Similarity=0.120 Sum_probs=145.7
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHH--HHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDG--LASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
+++++|+++++.++......+.++++|++|+++++ .+.... ...+.. +++|++|+++++..... ...+..+++
T Consensus 28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~~-~~~L~~L~Ls~n~i~~l---~~~~~~l~~ 102 (306)
T 2z66_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDFG-TTSLKYLDLSFNGVITM---SSNFLGLEQ 102 (306)
T ss_dssp TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCEEEEEEHHHHS-CSCCCEEECCSCSEEEE---EEEEETCTT
T ss_pred CCCCEEECCCCccCccCHhHhhccccCCEEECCCC-ccCcccCccccccc-ccccCEEECCCCccccC---hhhcCCCCC
Confidence 46777777777665433334566777777777764 333211 112333 67788888877652211 111345678
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++..........+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.+..++..+..+++|++|
T Consensus 103 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L 180 (306)
T 2z66_A 103 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-GLSSLEVLKMAGN-SFQENFLPDIFTELRNLTFL 180 (306)
T ss_dssp CCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTT-TCTTCCEEECTTC-EEGGGEECSCCTTCTTCCEE
T ss_pred CCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcc-cCcCCCEEECCCC-ccccccchhHHhhCcCCCEE
Confidence 888888776432222224567788888888888876544333333 5688888888874 33321223345567888999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLG 438 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~ 438 (473)
+++++. ++...... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+++.....+..++ +|+.|+++
T Consensus 181 ~Ls~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~ 256 (306)
T 2z66_A 181 DLSQCQ-LEQLSPTA-FNSLSSLQVLNMSHNN-FFSLDTFPY-KCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLT 256 (306)
T ss_dssp ECTTSC-CCEECTTT-TTTCTTCCEEECTTSC-CSBCCSGGG-TTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECT
T ss_pred ECCCCC-cCCcCHHH-hcCCCCCCEEECCCCc-cCccChhhc-cCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEcc
Confidence 988775 44322222 2467899999998865 433222122 3789999999999999888777777774 89999999
Q ss_pred CCCCcc
Q 012001 439 ICSNIT 444 (473)
Q Consensus 439 ~~~~l~ 444 (473)
+| .++
T Consensus 257 ~N-~~~ 261 (306)
T 2z66_A 257 QN-DFA 261 (306)
T ss_dssp TC-CEE
T ss_pred CC-Cee
Confidence 99 554
No 57
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.68 E-value=5e-18 Score=159.56 Aligned_cols=226 Identities=16% Similarity=0.124 Sum_probs=123.3
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++++.|+++++.+.......+.++++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~i~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 139 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN-HIRTIEIGAFNG-LANLNTLELFDNRL-TTIP-NGAFVYLSKLK 139 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSS-CCCEECGGGGTT-CSSCCEEECCSSCC-SSCC-TTTSCSCSSCC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCC-cCCccChhhccC-CccCCEEECCCCcC-CeeC-HhHhhccccCc
Confidence 45666666666665544555666677777777663 333332223333 66666666666542 1110 01134456777
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|++.++.............+++|+.|+++++ .++. ++. +..+++|+.|++
T Consensus 140 ~L~L~~N~-i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~--~~~-~~~l~~L~~L~L 214 (440)
T 3zyj_A 140 ELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMC-NLRE--IPN-LTPLIKLDELDL 214 (440)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTS-CCSS--CCC-CTTCSSCCEEEC
T ss_pred eeeCCCCc-ccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCC-cCcc--ccc-cCCCcccCEEEC
Confidence 77776653 333333456677788888887754222211111225677777777774 3332 111 335567777777
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 215 s~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 289 (440)
T 3zyj_A 215 SGNH-LSAIRPGS-FQGLMHLQKLWMIQSQ-IQVIERNAFD-NLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHN 289 (440)
T ss_dssp TTSC-CCEECTTT-TTTCTTCCEEECTTCC-CCEECTTSST-TCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSS
T ss_pred CCCc-cCccChhh-hccCccCCEEECCCCc-eeEEChhhhc-CCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCC
Confidence 7654 43321111 2356677777776643 4332222222 5667777777777666655555566677777777766
No 58
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.67 E-value=3e-19 Score=159.56 Aligned_cols=230 Identities=13% Similarity=0.130 Sum_probs=128.4
Q ss_pred hCCCCcEEeecc-ccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCc
Q 012001 200 KCQEIRTLDLSY-LPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGAD 278 (473)
Q Consensus 200 ~~~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 278 (473)
.+++|++|++++ +.+.+.....+.++++|++|+++++ .+.......+.. +++|++|+++++..... +...+..++
T Consensus 74 ~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n-~l~~~~p~~~~~-l~~L~~L~Ls~N~l~~~--~p~~~~~l~ 149 (313)
T 1ogq_A 74 NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT-NVSGAIPDFLSQ-IKTLVTLDFSYNALSGT--LPPSISSLP 149 (313)
T ss_dssp GCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEE-CCEEECCGGGGG-CTTCCEEECCSSEEESC--CCGGGGGCT
T ss_pred CCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCC-eeCCcCCHHHhC-CCCCCEEeCCCCccCCc--CChHHhcCC
Confidence 445555555552 4444334444445555555555542 222111112222 55555555555432111 011134456
Q ss_pred ccceeeccccccCchhHHHhhhCCC-CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 279 YLQQLILAYSFWVSADLSKCLHNFP-MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 279 ~L~~L~l~~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
+|++|+++++. +....+..+..++ +|+.|++++|.+....+..+. .++ |+.|+++++ .++.. .+..+..+++|+
T Consensus 150 ~L~~L~L~~N~-l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~-L~~L~Ls~N-~l~~~-~~~~~~~l~~L~ 224 (313)
T 1ogq_A 150 NLVGITFDGNR-ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA-NLN-LAFVDLSRN-MLEGD-ASVLFGSDKNTQ 224 (313)
T ss_dssp TCCEEECCSSC-CEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGG-GCC-CSEEECCSS-EEEEC-CGGGCCTTSCCS
T ss_pred CCCeEECcCCc-ccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHh-CCc-ccEEECcCC-cccCc-CCHHHhcCCCCC
Confidence 66666666652 3334445556665 777777777765544333333 333 777777763 33221 223345667888
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.|+++++. ++.. ... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+++..+.. ..+++|+.+++
T Consensus 225 ~L~L~~N~-l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p~~l-~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l 298 (313)
T 1ogq_A 225 KIHLAKNS-LAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQGL-TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAY 298 (313)
T ss_dssp EEECCSSE-ECCB-GGG-CCCCTTCCEEECCSSC-CEECCCGGG-GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGT
T ss_pred EEECCCCc-eeee-cCc-ccccCCCCEEECcCCc-ccCcCChHH-hcCcCCCEEECcCCcccccCCCC-ccccccChHHh
Confidence 88888765 3211 111 2457899999998865 442222223 37899999999999988665443 67899999999
Q ss_pred CCCCCcc
Q 012001 438 GICSNIT 444 (473)
Q Consensus 438 ~~~~~l~ 444 (473)
.+|+.+.
T Consensus 299 ~~N~~lc 305 (313)
T 1ogq_A 299 ANNKCLC 305 (313)
T ss_dssp CSSSEEE
T ss_pred cCCCCcc
Confidence 9996565
No 59
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.67 E-value=1.1e-17 Score=152.64 Aligned_cols=252 Identities=17% Similarity=0.120 Sum_probs=180.3
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++|++|+++++.++......+.++++|++|+++++ .+.......+.. +++|++|+++++... ... ...+..+++|+
T Consensus 52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~-l~~L~~L~Ls~n~l~-~~~-~~~~~~l~~L~ 127 (353)
T 2z80_A 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSN-GINTIEEDSFSS-LGSLEHLDLSYNYLS-NLS-SSWFKPLSSLT 127 (353)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCCS-SCC-HHHHTTCTTCS
T ss_pred ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCC-ccCccCHhhcCC-CCCCCEEECCCCcCC-cCC-HhHhCCCccCC
Confidence 68999999999887655557888999999999985 455443333444 899999999988633 221 23367789999
Q ss_pred eeeccccccCchhHH-HhhhCCCCCCeeEecCCc-CChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 282 QLILAYSFWVSADLS-KCLHNFPMLQSIKFEDCP-VARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~-~~l~~~~~L~~L~l~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
+|+++++.. ..... ..+..+++|+.|++++|. +.......+. .+++|++|+++++ .++.. .+..+..+++|++|
T Consensus 128 ~L~L~~n~l-~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~l~~l~~L~~L 203 (353)
T 2z80_A 128 FLNLLGNPY-KTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFA-GLTFLEELEIDAS-DLQSY-EPKSLKSIQNVSHL 203 (353)
T ss_dssp EEECTTCCC-SSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTT-TCCEEEEEEEEET-TCCEE-CTTTTTTCSEEEEE
T ss_pred EEECCCCCC-cccCchhhhccCCCCcEEECCCCccccccCHHHcc-CCCCCCEEECCCC-CcCcc-CHHHHhccccCCee
Confidence 999998743 32212 357789999999999984 4443333333 6789999999984 44432 13335678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHH---HHHHHhcCccCCeeeecccccChhhhhh----hhcCCCC
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA---FVLIGQQCQYLEELDITENEVNDEGLKS----ISRCSKL 432 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~~~~L 432 (473)
+++++. ++.... .....+++|+.|+++++. ++... +... ..++.++.+++.++.+++..... +..+++|
T Consensus 204 ~l~~n~-l~~~~~-~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~-~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L 279 (353)
T 2z80_A 204 ILHMKQ-HILLLE-IFVDVTSSVECLELRDTD-LDTFHFSELSTG-ETNSLIKKFTFRNVKITDESLFQVMKLLNQISGL 279 (353)
T ss_dssp EEECSC-STTHHH-HHHHHTTTEEEEEEESCB-CTTCCCC-------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTC
T ss_pred cCCCCc-cccchh-hhhhhcccccEEECCCCc-cccccccccccc-cccchhhccccccccccCcchhhhHHHHhcccCC
Confidence 999876 554432 334568999999999865 44322 2222 25778999999999888865443 5579999
Q ss_pred CeeecCCCCCcchHHHHH-HHhcCccCCeeecCCCCC
Q 012001 433 SSLKLGICSNITDEGLKH-VGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 433 ~~L~l~~~~~l~~~~~~~-~~~~~~~L~~L~l~~c~~ 468 (473)
+.|++++| +++. ++. +...+++|++|++++|+-
T Consensus 280 ~~L~Ls~N-~l~~--i~~~~~~~l~~L~~L~L~~N~~ 313 (353)
T 2z80_A 280 LELEFSRN-QLKS--VPDGIFDRLTSLQKIWLHTNPW 313 (353)
T ss_dssp CEEECCSS-CCCC--CCTTTTTTCTTCCEEECCSSCB
T ss_pred CEEECCCC-CCCc--cCHHHHhcCCCCCEEEeeCCCc
Confidence 99999999 8884 443 335899999999999874
No 60
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.67 E-value=8.9e-18 Score=158.46 Aligned_cols=226 Identities=19% Similarity=0.104 Sum_probs=118.9
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++++.|+++++.+.......+.++++|+.|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n-~i~~~~~~~~~~-l~~L~~L~L~~n~l-~~~~-~~~~~~l~~L~ 150 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN-SIRQIEVGAFNG-LASLNTLELFDNWL-TVIP-SGAFEYLSKLR 150 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSS-CCCEECTTTTTT-CTTCCEEECCSSCC-SBCC-TTTSSSCTTCC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCC-ccCCcChhhccC-cccCCEEECCCCcC-CccC-hhhhcccCCCC
Confidence 45666666666555444445556666666666653 333322222333 56666666665542 1110 11133456677
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|+++++.............+++|+.|+++++ .+++. + .+..+++|+.|++
T Consensus 151 ~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~L 225 (452)
T 3zyi_A 151 ELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMC-NIKDM--P-NLTPLVGLEELEM 225 (452)
T ss_dssp EEECCSCC-CCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTS-CCSSC--C-CCTTCTTCCEEEC
T ss_pred EEECCCCC-cceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCC-ccccc--c-cccccccccEEEC
Confidence 77776653 333333456677788888887754222211111225677777777763 33321 1 1334567777777
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 226 s~N~-l~~~~~~~-~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 300 (452)
T 3zyi_A 226 SGNH-FPEIRPGS-FHGLSSLKKLWVMNSQ-VSLIERNAFD-GLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHN 300 (452)
T ss_dssp TTSC-CSEECGGG-GTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSS
T ss_pred cCCc-CcccCccc-ccCccCCCEEEeCCCc-CceECHHHhc-CCCCCCEEECCCCcCCccChHHhccccCCCEEEccCC
Confidence 7654 33221111 2356677777776643 3332222222 5667777777777666555555556667777777766
No 61
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.67 E-value=1.4e-18 Score=155.30 Aligned_cols=249 Identities=14% Similarity=0.073 Sum_probs=169.5
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.++.++..++. .+.. -.++|++|+++++ .+.......+.. +++|++|+++++..............+++|++|+
T Consensus 10 ~~l~c~~~~l~~-ip~~--~~~~l~~L~L~~n-~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~ 84 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTG--IPSSATRLELESN-KLQSLPHGVFDK-LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84 (306)
T ss_dssp TEEECCSSCCSS-CCSC--CCTTCCEEECCSS-CCCCCCTTTTTT-CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEE
T ss_pred CEEEcCCCCccc-CCCC--CCCCCCEEECCCC-ccCccCHhHhhc-cccCCEEECCCCccCcccCcccccccccccCEEE
Confidence 455665554432 1122 2468999999985 444333222344 8999999999876332111112234689999999
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++... .++..+..+++|+.|+++++.+...........+++|++|+++++ .+... ....+..+++|++|+++++
T Consensus 85 Ls~n~i~--~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n 160 (306)
T 2z66_A 85 LSFNGVI--TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT-HTRVA-FNGIFNGLSSLEVLKMAGN 160 (306)
T ss_dssp CCSCSEE--EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS-CCEEC-STTTTTTCTTCCEEECTTC
T ss_pred CCCCccc--cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC-cCCcc-chhhcccCcCCCEEECCCC
Confidence 9987432 344557789999999999998665433112237899999999985 44321 2233567899999999987
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
. ++..........+++|+.|++++|. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++| .++
T Consensus 161 ~-l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 236 (306)
T 2z66_A 161 S-FQENFLPDIFTELRNLTFLDLSQCQ-LEQLSPTAFN-SLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLN-HIM 236 (306)
T ss_dssp E-EGGGEECSCCTTCTTCCEEECTTSC-CCEECTTTTT-TCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTS-CCC
T ss_pred c-cccccchhHHhhCcCCCEEECCCCC-cCCcCHHHhc-CCCCCCEEECCCCccCccChhhccCcccCCEeECCCC-CCc
Confidence 5 4431122233568999999999965 5543223333 7899999999999998877667788999999999999 777
Q ss_pred hHHHHHHHhcC-ccCCeeecCCCC
Q 012001 445 DEGLKHVGSTC-SMLKELDLYRFV 467 (473)
Q Consensus 445 ~~~~~~~~~~~-~~L~~L~l~~c~ 467 (473)
......+. .+ ++|++|++++|+
T Consensus 237 ~~~~~~~~-~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 237 TSKKQELQ-HFPSSLAFLNLTQND 259 (306)
T ss_dssp BCSSSSCC-CCCTTCCEEECTTCC
T ss_pred ccCHHHHH-hhhccCCEEEccCCC
Confidence 53333333 56 499999999986
No 62
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.66 E-value=7.8e-19 Score=158.72 Aligned_cols=268 Identities=13% Similarity=0.111 Sum_probs=122.5
Q ss_pred CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCC
Q 012001 125 RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEI 204 (473)
Q Consensus 125 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 204 (473)
++|+.|+++++ .+.......+..+++|++|++.++. +.......+. .+++|++|+++++. +...+.. ..++|
T Consensus 54 ~~l~~L~l~~n-~i~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~L~L~~n~-l~~l~~~----~~~~L 125 (332)
T 2ft3_A 54 PDTTLLDLQNN-DISELRKDDFKGLQHLYALVLVNNK-ISKIHEKAFS-PLRKLQKLYISKNH-LVEIPPN----LPSSL 125 (332)
T ss_dssp TTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CCEECGGGST-TCTTCCEEECCSSC-CCSCCSS----CCTTC
T ss_pred CCCeEEECCCC-cCCccCHhHhhCCCCCcEEECCCCc-cCccCHhHhh-CcCCCCEEECCCCc-CCccCcc----ccccC
Confidence 34555555544 2333222234445555555555432 2221111111 24555555555432 2211100 12567
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChH--HHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDD--GLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
++|+++++.+.......+..+++|+.|+++++. +... ....+.. + +|+.|+++++.... .. ....++|++
T Consensus 126 ~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~-l-~L~~L~l~~n~l~~-l~----~~~~~~L~~ 197 (332)
T 2ft3_A 126 VELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNP-LENSGFEPGAFDG-L-KLNYLRISEAKLTG-IP----KDLPETLNE 197 (332)
T ss_dssp CEEECCSSCCCCCCSGGGSSCSSCCEEECCSCC-CBGGGSCTTSSCS-C-CCSCCBCCSSBCSS-CC----SSSCSSCSC
T ss_pred CEEECCCCccCccCHhHhCCCccCCEEECCCCc-cccCCCCcccccC-C-ccCEEECcCCCCCc-cC----ccccCCCCE
Confidence 777777776654444445666777777776632 2211 0111111 2 55666665544211 00 001245555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++. +....+..+..+++|+.|++++|.+....... +..+++|++|+++
T Consensus 198 L~l~~n~-i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~---------------------------~~~l~~L~~L~L~ 249 (332)
T 2ft3_A 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIRMIENGS---------------------------LSFLPTLRELHLD 249 (332)
T ss_dssp CBCCSSC-CCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG---------------------------GGGCTTCCEEECC
T ss_pred EECCCCc-CCccCHHHhcCCCCCCEEECCCCcCCcCChhH---------------------------hhCCCCCCEEECC
Confidence 5555542 22222233445555555555555443322212 2334455555554
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHh-----cCccCCeeeecccccC--hhhhhhhhcCCCCCee
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQ-----QCQYLEELDITENEVN--DEGLKSISRCSKLSSL 435 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~~L~~L~l~~~~~~--~~~~~~l~~~~~L~~L 435 (473)
++. ++. ++.....+++|+.|+++++. ++..+...+.. ..+.|+.|++.+|.+. +.....+..+++|+.+
T Consensus 250 ~N~-l~~--lp~~l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l 325 (332)
T 2ft3_A 250 NNK-LSR--VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAI 325 (332)
T ss_dssp SSC-CCB--CCTTGGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTE
T ss_pred CCc-Cee--cChhhhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhh
Confidence 443 221 11112345666666666532 33322222211 2467889999998776 4444556678999999
Q ss_pred ecCCC
Q 012001 436 KLGIC 440 (473)
Q Consensus 436 ~l~~~ 440 (473)
++++|
T Consensus 326 ~l~~n 330 (332)
T 2ft3_A 326 QFGNY 330 (332)
T ss_dssp EC---
T ss_pred hcccc
Confidence 99887
No 63
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=3.2e-16 Score=147.03 Aligned_cols=117 Identities=13% Similarity=0.114 Sum_probs=50.6
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhC-CCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSH-KELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
++|+.|++++|.+.+-. ...++|+.|+++++ .++. +... ++|++|+++++. ++. +...+++
T Consensus 277 ~~L~~L~ls~N~l~~l~-----~~~~~L~~L~l~~N-~l~~------i~~~~~~L~~L~Ls~N~-l~~-----lp~~~~~ 338 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLS-----ELPPNLYYLNASSN-EIRS------LCDLPPSLEELNVSNNK-LIE-----LPALPPR 338 (454)
T ss_dssp TTCCEEECCSSCCSEES-----CCCTTCCEEECCSS-CCSE------ECCCCTTCCEEECCSSC-CSC-----CCCCCTT
T ss_pred CcCCEEECcCCccCccc-----CcCCcCCEEECcCC-cCCc------ccCCcCcCCEEECCCCc-ccc-----ccccCCc
Confidence 45666666665544310 01245666666652 3332 1122 366666666654 332 1112466
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh--hhhhhhhcC-------------CCCCeeecCCCCCcc
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND--EGLKSISRC-------------SKLSSLKLGICSNIT 444 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~--~~~~~l~~~-------------~~L~~L~l~~~~~l~ 444 (473)
|+.|++++|. ++. ++. .+++|+.|++++|.++. ..+..+..+ ++|+.|++++| .++
T Consensus 339 L~~L~L~~N~-l~~--lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N-~l~ 409 (454)
T 1jl5_A 339 LERLIASFNH-LAE--VPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETN-PLR 409 (454)
T ss_dssp CCEEECCSSC-CSC--CCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC------------------------
T ss_pred CCEEECCCCc-ccc--ccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCC-cCC
Confidence 7777776643 331 111 35667777777776665 333333333 56777777776 554
No 64
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.63 E-value=5e-18 Score=151.73 Aligned_cols=107 Identities=14% Similarity=0.108 Sum_probs=52.3
Q ss_pred hCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 352 SHKELRKLDITCCRKITYA--SINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
.+++|++|+++++. ++.. ....+...+++|+.|+++++. ++..........+++|+.|++++|.++.. ...+.
T Consensus 199 ~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~l~~i-p~~~~-- 273 (312)
T 1wwl_A 199 KFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTGLKQV-PKGLP-- 273 (312)
T ss_dssp SCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSCCSSC-CSSCC--
T ss_pred cCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCccChh-hhhcc--
Confidence 44555555555543 3311 112223345556666655533 32211000111346666666666666532 12222
Q ss_pred CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 430 SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
++|+.|++++| +++.. +. ...+++|++|++++++
T Consensus 274 ~~L~~L~Ls~N-~l~~~--p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 274 AKLSVLDLSYN-RLDRN--PS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp SEEEEEECCSS-CCCSC--CC-TTTSCEEEEEECTTCT
T ss_pred CCceEEECCCC-CCCCC--hh-HhhCCCCCEEeccCCC
Confidence 56677777776 66542 22 3466677777776664
No 65
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.63 E-value=1.2e-16 Score=149.98 Aligned_cols=322 Identities=16% Similarity=0.119 Sum_probs=204.0
Q ss_pred CCccEEecCCCCCCChhhHHhhhccccCCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcC-
Q 012001 71 PFITQLDLSLCPRANDDALSIVSSSSWKLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEA- 149 (473)
Q Consensus 71 ~~l~~L~l~~~~~~~~~~~~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~- 149 (473)
.++++|+++++. +.. + ....++|++|+++++.- .. ++ ...++|++|+++++. +.. +...
T Consensus 71 ~~l~~L~l~~~~-l~~-----l--p~~~~~L~~L~l~~n~l-~~--lp---~~~~~L~~L~l~~n~-l~~-----l~~~~ 130 (454)
T 1jl5_A 71 RQAHELELNNLG-LSS-----L--PELPPHLESLVASCNSL-TE--LP---ELPQSLKSLLVDNNN-LKA-----LSDLP 130 (454)
T ss_dssp HTCSEEECTTSC-CSC-----C--CSCCTTCSEEECCSSCC-SS--CC---CCCTTCCEEECCSSC-CSC-----CCSCC
T ss_pred cCCCEEEecCCc-ccc-----C--CCCcCCCCEEEccCCcC-Cc--cc---cccCCCcEEECCCCc-cCc-----ccCCC
Confidence 467899998874 222 2 12347899999987652 22 11 235889999999873 443 1122
Q ss_pred CCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccC
Q 012001 150 KNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLE 229 (473)
Q Consensus 150 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 229 (473)
++|++|++.++. +...+ .+ ..+++|++|+++++. +...+ ...++|++|++++|.+.. +..+.++++|+
T Consensus 131 ~~L~~L~L~~n~-l~~lp--~~-~~l~~L~~L~l~~N~-l~~lp-----~~~~~L~~L~L~~n~l~~--l~~~~~l~~L~ 198 (454)
T 1jl5_A 131 PLLEYLGVSNNQ-LEKLP--EL-QNSSFLKIIDVDNNS-LKKLP-----DLPPSLEFIAAGNNQLEE--LPELQNLPFLT 198 (454)
T ss_dssp TTCCEEECCSSC-CSSCC--CC-TTCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSS--CCCCTTCTTCC
T ss_pred CCCCEEECcCCC-CCCCc--cc-CCCCCCCEEECCCCc-CcccC-----CCcccccEEECcCCcCCc--CccccCCCCCC
Confidence 689999999874 33322 23 348999999999864 33211 134699999999998865 45688899999
Q ss_pred eeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeE
Q 012001 230 DLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIK 309 (473)
Q Consensus 230 ~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~ 309 (473)
+|+++++. +.. +....++|++|+++++... .. .. +..+++|++|+++++.... ++ ..+++|+.|+
T Consensus 199 ~L~l~~N~-l~~-----l~~~~~~L~~L~l~~n~l~-~l--p~-~~~l~~L~~L~l~~N~l~~--l~---~~~~~L~~L~ 263 (454)
T 1jl5_A 199 AIYADNNS-LKK-----LPDLPLSLESIVAGNNILE-EL--PE-LQNLPFLTTIYADNNLLKT--LP---DLPPSLEALN 263 (454)
T ss_dssp EEECCSSC-CSS-----CCCCCTTCCEEECCSSCCS-SC--CC-CTTCTTCCEEECCSSCCSS--CC---SCCTTCCEEE
T ss_pred EEECCCCc-CCc-----CCCCcCcccEEECcCCcCC-cc--cc-cCCCCCCCEEECCCCcCCc--cc---ccccccCEEE
Confidence 99999854 332 1122468999999988633 21 12 4568899999998874321 11 1347899999
Q ss_pred ecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC-CCCCEEEcc
Q 012001 310 FEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC-TSLTSLRME 388 (473)
Q Consensus 310 l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~-~~L~~L~l~ 388 (473)
+++|.+..- ....++|+.|+++++ .++.. + ...++|+.|+++++. ++. + ..+ ++|+.|+++
T Consensus 264 l~~N~l~~l-----~~~~~~L~~L~ls~N-~l~~l--~---~~~~~L~~L~l~~N~-l~~-----i-~~~~~~L~~L~Ls 325 (454)
T 1jl5_A 264 VRDNYLTDL-----PELPQSLTFLDVSEN-IFSGL--S---ELPPNLYYLNASSNE-IRS-----L-CDLPPSLEELNVS 325 (454)
T ss_dssp CCSSCCSCC-----CCCCTTCCEEECCSS-CCSEE--S---CCCTTCCEEECCSSC-CSE-----E-CCCCTTCCEEECC
T ss_pred CCCCccccc-----CcccCcCCEEECcCC-ccCcc--c---CcCCcCCEEECcCCc-CCc-----c-cCCcCcCCEEECC
Confidence 999987641 123578999999984 45431 1 112689999999875 443 1 123 599999999
Q ss_pred CCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH-HHHHHHhc-------------
Q 012001 389 CCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE-GLKHVGST------------- 454 (473)
Q Consensus 389 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~-~~~~~~~~------------- 454 (473)
++. ++. +...+++|+.|++++|.++.... .+++|+.|++++| .++.. .++.....
T Consensus 326 ~N~-l~~-----lp~~~~~L~~L~L~~N~l~~lp~----~l~~L~~L~L~~N-~l~~l~~ip~~l~~L~~n~~~~~i~~~ 394 (454)
T 1jl5_A 326 NNK-LIE-----LPALPPRLERLIASFNHLAEVPE----LPQNLKQLHVEYN-PLREFPDIPESVEDLRMNSHLAEVPEL 394 (454)
T ss_dssp SSC-CSC-----CCCCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS-CCSSCCCCCTTCCEEECCC--------
T ss_pred CCc-ccc-----ccccCCcCCEEECCCCccccccc----hhhhccEEECCCC-CCCcCCCChHHHHhhhhcccccccccc
Confidence 855 443 12246899999999998885432 4789999999999 76641 01111112
Q ss_pred CccCCeeecCCCCC
Q 012001 455 CSMLKELDLYRFVT 468 (473)
Q Consensus 455 ~~~L~~L~l~~c~~ 468 (473)
+++|++|++++|+-
T Consensus 395 ~~~L~~L~ls~N~l 408 (454)
T 1jl5_A 395 PQNLKQLHVETNPL 408 (454)
T ss_dssp --------------
T ss_pred cCcCCEEECCCCcC
Confidence 37899999988753
No 66
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.63 E-value=1.5e-17 Score=149.37 Aligned_cols=232 Identities=16% Similarity=0.146 Sum_probs=115.9
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.++++.|+++++. +...+ .....+++|++|++++|.+. .....+.++++|++|+++++. +... ...+.. +++|
T Consensus 80 ~~~l~~L~L~~n~-l~~lp--~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~-l~~l-p~~l~~-l~~L 152 (328)
T 4fcg_A 80 QPGRVALELRSVP-LPQFP--DQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP-LRAL-PASIAS-LNRL 152 (328)
T ss_dssp STTCCEEEEESSC-CSSCC--SCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC-CCCC-CGGGGG-CTTC
T ss_pred ccceeEEEccCCC-chhcC--hhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc-cccC-cHHHhc-CcCC
Confidence 4566666666543 22111 11224566666666666555 334445556666666666532 2211 112222 5555
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEe
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELS 334 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~ 334 (473)
++|++++|....... ..+.... ....+..+++|+.|++++|.+. ..+..+. .+++|++|+
T Consensus 153 ~~L~L~~n~~~~~~p--------~~~~~~~----------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~-~l~~L~~L~ 212 (328)
T 4fcg_A 153 RELSIRACPELTELP--------EPLASTD----------ASGEHQGLVNLQSLRLEWTGIR-SLPASIA-NLQNLKSLK 212 (328)
T ss_dssp CEEEEEEETTCCCCC--------SCSEEEC-----------CCCEEESTTCCEEEEEEECCC-CCCGGGG-GCTTCCEEE
T ss_pred CEEECCCCCCccccC--------hhHhhcc----------chhhhccCCCCCEEECcCCCcC-cchHhhc-CCCCCCEEE
Confidence 555555433221100 0000000 0011234666666666666554 2222222 556666666
Q ss_pred cCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeec
Q 012001 335 LSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDIT 414 (473)
Q Consensus 335 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 414 (473)
++++ .++. ++..+..+++|++|++++|...+. +......+++|+.|++++|....... ..+ ..+++|+.|+++
T Consensus 213 L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~~p-~~~-~~l~~L~~L~L~ 285 (328)
T 4fcg_A 213 IRNS-PLSA--LGPAIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLTLP-LDI-HRLTQLEKLDLR 285 (328)
T ss_dssp EESS-CCCC--CCGGGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCBCC-TTG-GGCTTCCEEECT
T ss_pred ccCC-CCCc--CchhhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhhcc-hhh-hcCCCCCEEeCC
Confidence 6663 3331 222344566777777766553331 11112346777777777765433211 112 267777888887
Q ss_pred ccccChhhhhhhhcCCCCCeeecCCC
Q 012001 415 ENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 415 ~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|.+....+..+.++++|+.+.+..+
T Consensus 286 ~n~~~~~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 286 GCVNLSRLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp TCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred CCCchhhccHHHhhccCceEEeCCHH
Confidence 77766666677777777777777765
No 67
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.63 E-value=1.1e-17 Score=151.19 Aligned_cols=272 Identities=12% Similarity=0.045 Sum_probs=184.6
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
.++|+.|+++++. +....... ...+++|++|++++|.++......+.++++|++|+++++ .+..... ...++|
T Consensus 53 ~~~l~~L~l~~n~-i~~~~~~~-~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~----~~~~~L 125 (332)
T 2ft3_A 53 SPDTTLLDLQNND-ISELRKDD-FKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN-HLVEIPP----NLPSSL 125 (332)
T ss_dssp CTTCCEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS-CCCSCCS----SCCTTC
T ss_pred CCCCeEEECCCCc-CCccCHhH-hhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC-cCCccCc----cccccC
Confidence 4689999999864 44332211 247899999999999888766778889999999999985 3442111 113799
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCc-hhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeE
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVS-ADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKEL 333 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L 333 (473)
++|+++++...... ...+..+++|++|+++++.... ...+..+..+ +|+.|+++++.+..... . ..++|++|
T Consensus 126 ~~L~l~~n~i~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~l~~-~---~~~~L~~L 198 (332)
T 2ft3_A 126 VELRIHDNRIRKVP--KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTGIPK-D---LPETLNEL 198 (332)
T ss_dssp CEEECCSSCCCCCC--SGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSSCCS-S---SCSSCSCC
T ss_pred CEEECCCCccCccC--HhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCccCc-c---ccCCCCEE
Confidence 99999987632211 1225668999999999874321 1233445555 99999999998764211 1 23799999
Q ss_pred ecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeee
Q 012001 334 SLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDI 413 (473)
Q Consensus 334 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 413 (473)
+++++ .++... ...+..+++|+.|+++++. ++...... ...+++|+.|++++|. ++. +......+++|+.|++
T Consensus 199 ~l~~n-~i~~~~-~~~l~~l~~L~~L~L~~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~--lp~~l~~l~~L~~L~l 271 (332)
T 2ft3_A 199 HLDHN-KIQAIE-LEDLLRYSKLYRLGLGHNQ-IRMIENGS-LSFLPTLRELHLDNNK-LSR--VPAGLPDLKLLQVVYL 271 (332)
T ss_dssp BCCSS-CCCCCC-TTSSTTCTTCSCCBCCSSC-CCCCCTTG-GGGCTTCCEEECCSSC-CCB--CCTTGGGCTTCCEEEC
T ss_pred ECCCC-cCCccC-HHHhcCCCCCCEEECCCCc-CCcCChhH-hhCCCCCCEEECCCCc-Cee--cChhhhcCccCCEEEC
Confidence 99984 444321 1234577999999999875 44322222 2568999999999965 542 2222338899999999
Q ss_pred cccccChhhhhhhhc------CCCCCeeecCCCCCcchHH-HHHHHhcCccCCeeecCCCCC
Q 012001 414 TENEVNDEGLKSISR------CSKLSSLKLGICSNITDEG-LKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 414 ~~~~~~~~~~~~l~~------~~~L~~L~l~~~~~l~~~~-~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++|.+++.+...+.. .++|+.|++.+| .++... .+.....+++|+.+++++|.+
T Consensus 272 ~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N-~~~~~~~~~~~~~~l~~L~~l~l~~n~~ 332 (332)
T 2ft3_A 272 HTNNITKVGVNDFCPVGFGVKRAYYNGISLFNN-PVPYWEVQPATFRCVTDRLAIQFGNYKK 332 (332)
T ss_dssp CSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSS-SSCGGGSCGGGGTTBCCSTTEEC-----
T ss_pred CCCCCCccChhHccccccccccccccceEeecC-cccccccCcccccccchhhhhhcccccC
Confidence 999999887666653 467999999999 555222 223445799999999998863
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.62 E-value=3e-17 Score=155.58 Aligned_cols=236 Identities=14% Similarity=0.100 Sum_probs=125.7
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccce
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQ 282 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 282 (473)
+|+.|++++|.+++.....+..+++|+.|+++++. +..... +.. +++|+.|+++++. ++.. ...++|+.
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~--l~~-l~~L~~L~Ls~N~-l~~l------~~~~~L~~ 103 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETLD--LES-LSTLRTLDLNNNY-VQEL------LVGPSIET 103 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSC-CEEEEE--CTT-CTTCCEEECCSSE-EEEE------EECTTCCE
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCC-CCCCcc--ccc-CCCCCEEEecCCc-CCCC------CCCCCcCE
Confidence 45555555544444333344445555555554432 211110 222 4555555555443 1110 11245555
Q ss_pred eeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecC
Q 012001 283 LILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDIT 362 (473)
Q Consensus 283 L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~ 362 (473)
|+++++.. ....+ ..+++|+.|++++|.+.......+. .+++|+.|++++ +.++......+...+++|+.|+++
T Consensus 104 L~L~~N~l-~~~~~---~~l~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~-N~l~~~~~~~l~~~l~~L~~L~Ls 177 (487)
T 3oja_A 104 LHAANNNI-SRVSC---SRGQGKKNIYLANNKITMLRDLDEG-CRSRVQYLDLKL-NEIDTVNFAELAASSDTLEHLNLQ 177 (487)
T ss_dssp EECCSSCC-CCEEE---CCCSSCEEEECCSSCCCSGGGBCGG-GGSSEEEEECTT-SCCCEEEGGGGGGGTTTCCEEECT
T ss_pred EECcCCcC-CCCCc---cccCCCCEEECCCCCCCCCCchhhc-CCCCCCEEECCC-CCCCCcChHHHhhhCCcccEEecC
Confidence 55555422 11111 2345566666666655543333332 456666666665 344432222222345666667666
Q ss_pred CCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCC
Q 012001 363 CCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSN 442 (473)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 442 (473)
+|. ++.. ... ..+++|+.|+++++. ++.... .+ ..+++|+.|++++|.++.. +..+..+++|+.|++++| .
T Consensus 178 ~N~-l~~~--~~~-~~l~~L~~L~Ls~N~-l~~~~~-~~-~~l~~L~~L~Ls~N~l~~l-p~~l~~l~~L~~L~l~~N-~ 248 (487)
T 3oja_A 178 YNF-IYDV--KGQ-VVFAKLKTLDLSSNK-LAFMGP-EF-QSAAGVTWISLRNNKLVLI-EKALRFSQNLEHFDLRGN-G 248 (487)
T ss_dssp TSC-CCEE--ECC-CCCTTCCEEECCSSC-CCEECG-GG-GGGTTCSEEECTTSCCCEE-CTTCCCCTTCCEEECTTC-C
T ss_pred CCc-cccc--ccc-ccCCCCCEEECCCCC-CCCCCH-hH-cCCCCccEEEecCCcCccc-chhhccCCCCCEEEcCCC-C
Confidence 654 3322 111 136788888887754 443211 12 2778899999999888863 344667889999999999 7
Q ss_pred cchHHHHHHHhcCccCCeeecC
Q 012001 443 ITDEGLKHVGSTCSMLKELDLY 464 (473)
Q Consensus 443 l~~~~~~~~~~~~~~L~~L~l~ 464 (473)
++...++.+...+++|+.+++.
T Consensus 249 l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 249 FHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp BCHHHHHHHHTTCHHHHHHHHH
T ss_pred CcCcchHHHHHhCCCCcEEecc
Confidence 7755677777778888877764
No 69
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.62 E-value=4.9e-17 Score=143.53 Aligned_cols=133 Identities=20% Similarity=0.180 Sum_probs=53.3
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|+++++.++......+..+++|++|+++++..+.......+.. +++|++|+++++...... ...+..+++
T Consensus 54 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~-l~~L~~L~l~~n~l~~~~--~~~~~~l~~ 130 (285)
T 1ozn_A 54 ACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHG-LGRLHTLHLDRCGLQELG--PGLFRGLAA 130 (285)
T ss_dssp TCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTT-CTTCCEEECTTSCCCCCC--TTTTTTCTT
T ss_pred cCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcC-CcCCCEEECCCCcCCEEC--HhHhhCCcC
Confidence 34555555555554443333344445555555555432222221112222 445555555444311100 011233444
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
|++|+++++. +.......+..+++|+.|++++|.+.......+. .+++|++|++++
T Consensus 131 L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~ 186 (285)
T 1ozn_A 131 LQYLYLQDNA-LQALPDDTFRDLGNLTHLFLHGNRISSVPERAFR-GLHSLDRLLLHQ 186 (285)
T ss_dssp CCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS
T ss_pred CCEEECCCCc-ccccCHhHhccCCCccEEECCCCcccccCHHHhc-CccccCEEECCC
Confidence 5555544442 2222222344455555555555544322211121 344444444444
No 70
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.61 E-value=1.1e-17 Score=149.83 Aligned_cols=223 Identities=15% Similarity=0.133 Sum_probs=141.4
Q ss_pred HHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHH
Q 012001 195 ELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLI 274 (473)
Q Consensus 195 ~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~ 274 (473)
..+...+++|++|+++++.++......+..+++|++|+++++. +.... .+.. +++|++|+++++.. +.
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~--~~~~-l~~L~~L~Ls~n~l-~~------- 94 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV-LYETL--DLES-LSTLRTLDLNNNYV-QE------- 94 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSC-CEEEE--EETT-CTTCCEEECCSSEE-EE-------
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCc-CCcch--hhhh-cCCCCEEECcCCcc-cc-------
Confidence 3444466788888888887765555566667777777777643 22111 0222 55555555555431 11
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
+...++|+.|++++|.+...... .+++|++|+++++ .++.. ....+..++
T Consensus 95 ------------------------l~~~~~L~~L~l~~n~l~~~~~~----~~~~L~~L~l~~N-~l~~~-~~~~~~~l~ 144 (317)
T 3o53_A 95 ------------------------LLVGPSIETLHAANNNISRVSCS----RGQGKKNIYLANN-KITML-RDLDEGCRS 144 (317)
T ss_dssp ------------------------EEECTTCCEEECCSSCCSEEEEC----CCSSCEEEECCSS-CCCSG-GGBCTGGGS
T ss_pred ------------------------ccCCCCcCEEECCCCccCCcCcc----ccCCCCEEECCCC-CCCCc-cchhhhccC
Confidence 11225555666655554432211 3466777777663 44321 111234568
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+|++|+++++. ++......+...+++|+.|++++|. ++.. .... .+++|+.|++++|.++.... .+..+++|+.
T Consensus 145 ~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~ 218 (317)
T 3o53_A 145 RVQYLDLKLNE-IDTVNFAELAASSDTLEHLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTW 218 (317)
T ss_dssp SEEEEECTTSC-CCEEEGGGGGGGTTTCCEEECTTSC-CCEE--ECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSE
T ss_pred CCCEEECCCCC-CCcccHHHHhhccCcCCEEECCCCc-Cccc--cccc-ccccCCEEECCCCcCCcchh-hhcccCcccE
Confidence 88888888765 5544344444568999999999965 4432 1111 58999999999999987654 3778999999
Q ss_pred eecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 435 LKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 435 L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|++++| .++. ++.....+++|+.|++++|+-
T Consensus 219 L~L~~N-~l~~--l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 219 ISLRNN-KLVL--IEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp EECTTS-CCCE--ECTTCCCCTTCCEEECTTCCC
T ss_pred EECcCC-cccc--hhhHhhcCCCCCEEEccCCCc
Confidence 999999 8884 444456889999999999874
No 71
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.60 E-value=1.6e-16 Score=140.23 Aligned_cols=222 Identities=16% Similarity=0.121 Sum_probs=136.1
Q ss_pred cEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceee
Q 012001 205 RTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLI 284 (473)
Q Consensus 205 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 284 (473)
+.++.++..++.. +. ...++|++|+++++ .+.......+.. +++|++|+++++.. +... ...+..+++|++|+
T Consensus 14 ~~~~c~~~~l~~i-p~--~~~~~l~~L~l~~n-~i~~~~~~~~~~-~~~L~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~ 86 (285)
T 1ozn_A 14 VTTSCPQQGLQAV-PV--GIPAASQRIFLHGN-RISHVPAASFRA-CRNLTILWLHSNVL-ARID-AAAFTGLALLEQLD 86 (285)
T ss_dssp CEEECCSSCCSSC-CT--TCCTTCSEEECTTS-CCCEECTTTTTT-CTTCCEEECCSSCC-CEEC-TTTTTTCTTCCEEE
T ss_pred eEEEcCcCCcccC-Cc--CCCCCceEEEeeCC-cCCccCHHHccc-CCCCCEEECCCCcc-ceeC-HhhcCCccCCCEEe
Confidence 4555555544321 11 12568999999884 455433333444 78999999987752 2211 12245678888888
Q ss_pred ccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 285 LAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 285 l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
++++..+....+..+..+++|+.|++++|.+.......+. .+++|++|+++++ .++... ...+..+++|++|+++++
T Consensus 87 l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n 163 (285)
T 1ozn_A 87 LSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFR-GLAALQYLYLQDN-ALQALP-DDTFRDLGNLTHLFLHGN 163 (285)
T ss_dssp CCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSS
T ss_pred CCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhh-CCcCCCEEECCCC-cccccC-HhHhccCCCccEEECCCC
Confidence 8887545444456677888888888888877654333333 5778888888874 343211 122445678888888776
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 164 ~-l~~~~~~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~-~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N 235 (285)
T 1ozn_A 164 R-ISSVPERA-FRGLHSLDRLLLHQNR-VAHVHPHAFR-DLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235 (285)
T ss_dssp C-CCEECTTT-TTTCTTCCEEECCSSC-CCEECTTTTT-TCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSS
T ss_pred c-ccccCHHH-hcCccccCEEECCCCc-ccccCHhHcc-CcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCC
Confidence 4 44222111 2346777777777754 4433222222 6677777777777777666556667777777777777
No 72
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.60 E-value=5e-17 Score=153.32 Aligned_cols=157 Identities=18% Similarity=0.098 Sum_probs=85.4
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+.......+.++++|++|+++++..+.......+.. +++|+.|+++++...... .+..+++
T Consensus 145 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 219 (452)
T 3zyi_A 145 YLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG-LFNLKYLNLGMCNIKDMP----NLTPLVG 219 (452)
T ss_dssp SCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CTTCCEEECTTSCCSSCC----CCTTCTT
T ss_pred ccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccC-CCCCCEEECCCCcccccc----ccccccc
Confidence 45666666666666654333445566677777776655444333222333 666777776665422211 1334566
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|+.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|+.|+++++ .++.. ....+..+++|+.|
T Consensus 220 L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L 295 (452)
T 3zyi_A 220 LEELEMSGNH-FPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFD-GLASLVELNLAHN-NLSSL-PHDLFTPLRYLVEL 295 (452)
T ss_dssp CCEEECTTSC-CSEECGGGGTTCTTCCEEECTTSCCCEECTTTTT-TCTTCCEEECCSS-CCSCC-CTTSSTTCTTCCEE
T ss_pred ccEEECcCCc-CcccCcccccCccCCCEEEeCCCcCceECHHHhc-CCCCCCEEECCCC-cCCcc-ChHHhccccCCCEE
Confidence 7777776653 3334455566667777777777665544333333 5566777777663 33321 11123345666666
Q ss_pred ecCCCC
Q 012001 360 DITCCR 365 (473)
Q Consensus 360 ~l~~~~ 365 (473)
++++++
T Consensus 296 ~L~~Np 301 (452)
T 3zyi_A 296 HLHHNP 301 (452)
T ss_dssp ECCSSC
T ss_pred EccCCC
Confidence 666543
No 73
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.60 E-value=4.9e-17 Score=152.83 Aligned_cols=202 Identities=20% Similarity=0.177 Sum_probs=86.7
Q ss_pred CCCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCc
Q 012001 98 KLTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRK 177 (473)
Q Consensus 98 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 177 (473)
.++++.|+++++. +.......+ ..+++|++|+++++ .+.......+..+++|++|++.++. ++......+
T Consensus 63 ~~~l~~L~L~~n~-i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~------ 132 (440)
T 3zyj_A 63 STNTRLLNLHENQ-IQIIKVNSF-KHLRHLEILQLSRN-HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAF------ 132 (440)
T ss_dssp CTTCSEEECCSCC-CCEECTTTT-SSCSSCCEEECCSS-CCCEECGGGGTTCSSCCEEECCSSC-CSSCCTTTS------
T ss_pred CCCCcEEEccCCc-CCeeCHHHh-hCCCCCCEEECCCC-cCCccChhhccCCccCCEEECCCCc-CCeeCHhHh------
Confidence 3566666666553 222111222 25666666666665 3433333345555666666665542 221111111
Q ss_pred CceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEE
Q 012001 178 LKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKAL 257 (473)
Q Consensus 178 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L 257 (473)
..+++|++|++++|.+.......+..+++|++|+++++..+.......+.. +++|+.|
T Consensus 133 ---------------------~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~-l~~L~~L 190 (440)
T 3zyj_A 133 ---------------------VYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG-LSNLRYL 190 (440)
T ss_dssp ---------------------CSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTT-CSSCCEE
T ss_pred ---------------------hccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhc-ccccCee
Confidence 133444444444444433222333444455555554433333222112222 4455555
Q ss_pred ecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCC
Q 012001 258 NLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSK 337 (473)
Q Consensus 258 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~ 337 (473)
+++++....... +..+++|+.|+++++ .+....+..+..+++|+.|++++|.+.......+. .+++|+.|++++
T Consensus 191 ~L~~n~l~~~~~----~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~ 264 (440)
T 3zyj_A 191 NLAMCNLREIPN----LTPLIKLDELDLSGN-HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFD-NLQSLVEINLAH 264 (440)
T ss_dssp ECTTSCCSSCCC----CTTCSSCCEEECTTS-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSST-TCTTCCEEECTT
T ss_pred cCCCCcCccccc----cCCCcccCEEECCCC-ccCccChhhhccCccCCEEECCCCceeEEChhhhc-CCCCCCEEECCC
Confidence 554443111100 223445555555544 22223334444555555555555554433222222 345555555554
No 74
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.59 E-value=1.6e-17 Score=149.27 Aligned_cols=225 Identities=15% Similarity=0.177 Sum_probs=150.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
..++++.|+++++.+. .....+.++++|++|+++++. +... ...+.. +++|++|+++++...
T Consensus 79 ~~~~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~-l~~l-p~~~~~-l~~L~~L~Ls~n~l~-------------- 140 (328)
T 4fcg_A 79 TQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAG-LMEL-PDTMQQ-FAGLETLTLARNPLR-------------- 140 (328)
T ss_dssp TSTTCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSC-CCCC-CSCGGG-GTTCSEEEEESCCCC--------------
T ss_pred cccceeEEEccCCCch-hcChhhhhCCCCCEEECCCCC-ccch-hHHHhc-cCCCCEEECCCCccc--------------
Confidence 4589999999999886 455567778889999988743 3311 112222 556666666554321
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHH--------hhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIG--------NWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~--------~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.++..+..+++|+.|++++|......+..+. ..+++|++|+++++ .++ .++..+.
T Consensus 141 --------------~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n-~l~--~lp~~l~ 203 (328)
T 4fcg_A 141 --------------ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWT-GIR--SLPASIA 203 (328)
T ss_dssp --------------CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEE-CCC--CCCGGGG
T ss_pred --------------cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCC-CcC--cchHhhc
Confidence 2233344555555555555443322222111 14799999999984 554 2444567
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
.+++|++|++++|. ++. +......+++|+.|++++|...... ......+++|+.|++++|.+.......+..+++
T Consensus 204 ~l~~L~~L~L~~N~-l~~--l~~~l~~l~~L~~L~Ls~n~~~~~~--p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 278 (328)
T 4fcg_A 204 NLQNLKSLKIRNSP-LSA--LGPAIHHLPKLEELDLRGCTALRNY--PPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQ 278 (328)
T ss_dssp GCTTCCEEEEESSC-CCC--CCGGGGGCTTCCEEECTTCTTCCBC--CCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTT
T ss_pred CCCCCCEEEccCCC-CCc--CchhhccCCCCCEEECcCCcchhhh--HHHhcCCCCCCEEECCCCCchhhcchhhhcCCC
Confidence 88999999999876 442 2222457899999999997754321 112237899999999999887777777889999
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRF 466 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c 466 (473)
|+.|++++|..++ .++.....+++|+.+.+...
T Consensus 279 L~~L~L~~n~~~~--~iP~~l~~L~~L~~l~l~~~ 311 (328)
T 4fcg_A 279 LEKLDLRGCVNLS--RLPSLIAQLPANCIILVPPH 311 (328)
T ss_dssp CCEEECTTCTTCC--CCCGGGGGSCTTCEEECCGG
T ss_pred CCEEeCCCCCchh--hccHHHhhccCceEEeCCHH
Confidence 9999999994444 35555668999999987643
No 75
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.57 E-value=9.1e-16 Score=137.07 Aligned_cols=207 Identities=19% Similarity=0.177 Sum_probs=119.0
Q ss_pred hCCCCcEEeeccccCCCCccccc--ccCcccCeeeccCCCCCChHHHHHHHhc----CCCCcEEecCCCCccchHHHHHH
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDDDGLASVEYS----CKSLKALNLSKCQNISHVGLSSL 273 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~~ 273 (473)
.+++|++|++++|.+++.....+ ..+++|++|+++++. +... ...+... .++|++|+++++..
T Consensus 93 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l--------- 161 (312)
T 1wwl_A 93 GISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS-WATR-DAWLAELQQWLKPGLKVLSIAQAHS--------- 161 (312)
T ss_dssp TTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCB-CSSS-SSHHHHHHTTCCTTCCEEEEESCSC---------
T ss_pred CcCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCC-Ccch-hHHHHHHHHhhcCCCcEEEeeCCCC---------
Confidence 57899999999998876666655 678888888888743 3322 1122220 15666666665542
Q ss_pred HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhH--HHHH-HhhCCCCCeEecCCCCCCCh--HHHHH
Q 012001 274 IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSG--IKAI-GNWHGSLKELSLSKCSGVTD--EELSF 348 (473)
Q Consensus 274 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~l-~~~~~~L~~L~l~~~~~~~~--~~~~~ 348 (473)
....+..+..+++|+.|++++|.+.... +..+ ...+++|++|+++++ .++. .....
T Consensus 162 ------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~ 222 (312)
T 1wwl_A 162 ------------------LNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNA-GMETPSGVCSA 222 (312)
T ss_dssp ------------------CCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTS-CCCCHHHHHHH
T ss_pred ------------------ccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCC-cCcchHHHHHH
Confidence 1122233445556666666665544321 1121 024566666666663 4442 11223
Q ss_pred HHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhc
Q 012001 349 VVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISR 428 (473)
Q Consensus 349 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 428 (473)
++..+++|++|+++++. ++..........+++|+.|+++++. ++. +.... .++|+.|++++|.+++.. .+..
T Consensus 223 ~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~~l~~L~~L~Ls~N~-l~~--ip~~~--~~~L~~L~Ls~N~l~~~p--~~~~ 294 (312)
T 1wwl_A 223 LAAARVQLQGLDLSHNS-LRDAAGAPSCDWPSQLNSLNLSFTG-LKQ--VPKGL--PAKLSVLDLSYNRLDRNP--SPDE 294 (312)
T ss_dssp HHHTTCCCSEEECTTSC-CCSSCCCSCCCCCTTCCEEECTTSC-CSS--CCSSC--CSEEEEEECCSSCCCSCC--CTTT
T ss_pred HHhcCCCCCEEECCCCc-CCcccchhhhhhcCCCCEEECCCCc-cCh--hhhhc--cCCceEEECCCCCCCCCh--hHhh
Confidence 34455677777776654 3321100111235788888888754 441 11111 168999999999888763 2778
Q ss_pred CCCCCeeecCCCCCcch
Q 012001 429 CSKLSSLKLGICSNITD 445 (473)
Q Consensus 429 ~~~L~~L~l~~~~~l~~ 445 (473)
+++|+.|++++| .+++
T Consensus 295 l~~L~~L~L~~N-~l~~ 310 (312)
T 1wwl_A 295 LPQVGNLSLKGN-PFLD 310 (312)
T ss_dssp SCEEEEEECTTC-TTTC
T ss_pred CCCCCEEeccCC-CCCC
Confidence 999999999999 6664
No 76
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.57 E-value=1.3e-14 Score=140.40 Aligned_cols=123 Identities=17% Similarity=0.125 Sum_probs=64.0
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
+++|+.|++++|.+..- ....++|+.|+++++ .++. ++ ..+++|+.|++++|. ++... ..+++
T Consensus 180 ~~~L~~L~Ls~N~l~~l-----~~~~~~L~~L~L~~N-~l~~--l~---~~~~~L~~L~Ls~N~-L~~lp-----~~l~~ 242 (622)
T 3g06_A 180 PSGLQELSVSDNQLASL-----PTLPSELYKLWAYNN-RLTS--LP---ALPSGLKELIVSGNR-LTSLP-----VLPSE 242 (622)
T ss_dssp CTTCCEEECCSSCCSCC-----CCCCTTCCEEECCSS-CCSS--CC---CCCTTCCEEECCSSC-CSCCC-----CCCTT
T ss_pred CCCCcEEECCCCCCCCC-----CCccchhhEEECcCC-cccc--cC---CCCCCCCEEEccCCc-cCcCC-----CCCCc
Confidence 45555555555554421 012355666666553 3321 11 123566666666553 33211 34566
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHH
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLK 449 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~ 449 (473)
|+.|++++|. ++. +. ..+++|+.|++++|.++.. +..+..+++|+.|++++| .++.....
T Consensus 243 L~~L~Ls~N~-L~~--lp---~~~~~L~~L~Ls~N~L~~l-p~~l~~l~~L~~L~L~~N-~l~~~~~~ 302 (622)
T 3g06_A 243 LKELMVSGNR-LTS--LP---MLPSGLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGN-PLSERTLQ 302 (622)
T ss_dssp CCEEECCSSC-CSC--CC---CCCTTCCEEECCSSCCCSC-CGGGGGSCTTCEEECCSC-CCCHHHHH
T ss_pred CcEEECCCCC-CCc--CC---cccccCcEEeCCCCCCCcC-CHHHhhccccCEEEecCC-CCCCcCHH
Confidence 6777766643 332 11 1456677777777766633 344666777777777777 56654333
No 77
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.54 E-value=7.4e-14 Score=126.92 Aligned_cols=172 Identities=18% Similarity=0.228 Sum_probs=136.9
Q ss_pred CcccceeeccccccCchhHHH----hhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 277 ADYLQQLILAYSFWVSADLSK----CLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~----~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.++|++|+++++. +...... .+. ..++|+.|++++|.+++.++..+...+++|++|++++ +.+++.+...+..
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~-n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQL-NSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCS-SCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCC-CCCCHHHHHHHHH
Confidence 4789999999885 4433333 333 2369999999999999999888887788999999999 4788877666543
Q ss_pred ----hCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCHHHHHHHH---hcCccCCeeeecccccChh
Q 012001 352 ----SHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSWEAFVLIG---QQCQYLEELDITENEVNDE 421 (473)
Q Consensus 352 ----~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 421 (473)
..++|++|++++|. +++.+...++ ..+++|+.|++++|. +++.+...+. ..+++|+.|++++|.+++.
T Consensus 149 ~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~ 226 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNNP-LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNGAGDT 226 (372)
T ss_dssp HHHSTTCCCCEEECCSSC-CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSCCCHH
T ss_pred HHHhcCCccceeeCCCCC-CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCCCCHH
Confidence 35889999999986 8877766554 468999999999965 8887765554 3677999999999999998
Q ss_pred hhhhhh----cCCCCCeeecCCCCCcchHHHHHHHh
Q 012001 422 GLKSIS----RCSKLSSLKLGICSNITDEGLKHVGS 453 (473)
Q Consensus 422 ~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~~ 453 (473)
+...++ .+++|++|++++| .+++.+...+..
T Consensus 227 g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~ 261 (372)
T 3un9_A 227 AALALARAAREHPSLELLHLYFN-ELSSEGRQVLRD 261 (372)
T ss_dssp HHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHH
Confidence 877665 4799999999999 899988887764
No 78
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.53 E-value=1.3e-13 Score=125.24 Aligned_cols=190 Identities=14% Similarity=0.166 Sum_probs=140.1
Q ss_pred CCCCcEEecCCCCccchHHHHH---HHhc-CcccceeeccccccCchhHHH-hhhCCCCCCeeEecCCcCChhHHHHHHh
Q 012001 251 CKSLKALNLSKCQNISHVGLSS---LIKG-ADYLQQLILAYSFWVSADLSK-CLHNFPMLQSIKFEDCPVARSGIKAIGN 325 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~---~~~~-~~~L~~L~l~~~~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~l~~ 325 (473)
.+.|+.|+++++. ++..+... .+.. .++|++|+++++. +.+.... ....+++|+.|++++|.+++.+...++.
T Consensus 71 ~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~-l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~ 148 (372)
T 3un9_A 71 LSSLRQLNLAGVR-MTPVKCTVVAAVLGSGRHALDEVNLASCQ-LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRD 148 (372)
T ss_dssp HTTCCEEECTTSC-CCHHHHHHHHHHHSSCSSCEEEEECTTCC-CCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHH
T ss_pred HhhCCEEEecCCC-CCHHHHHHHHHHHhhCCCCceEEEecCCC-CCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHH
Confidence 5789999999987 55544333 3332 3699999999985 4444333 3345678999999999999988887764
Q ss_pred ----hCCCCCeEecCCCCCCChHHHHHH---HHhCCCCcEEecCCCCCCCHHHHHHHH---hcCCCCCEEEccCCCCCCH
Q 012001 326 ----WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRKITYASINSIT---KTCTSLTSLRMECCKLVSW 395 (473)
Q Consensus 326 ----~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~~ 395 (473)
..++|++|++++| .+++.+...+ +..+++|++|++++|. +++.+...++ ...++|+.|++++|. +++
T Consensus 149 ~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-i~~ 225 (372)
T 3un9_A 149 LLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYNG-AGD 225 (372)
T ss_dssp HHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSSC-CCH
T ss_pred HHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCCC-CCH
Confidence 3588999999995 6777655444 4567999999999986 8887765554 357899999999965 888
Q ss_pred HHHHHHHh---cCccCCeeeecccccChhhhhhhhcCC--C---CCeee--cCCCCCcchH
Q 012001 396 EAFVLIGQ---QCQYLEELDITENEVNDEGLKSISRCS--K---LSSLK--LGICSNITDE 446 (473)
Q Consensus 396 ~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~l~~~~--~---L~~L~--l~~~~~l~~~ 446 (473)
.+...+.. .+++|++|++++|.+++.+...+.... . |+.+. +..+ .+++.
T Consensus 226 ~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~-~~~~~ 285 (372)
T 3un9_A 226 TAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGT-AVSEY 285 (372)
T ss_dssp HHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred HHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCC-ccCHH
Confidence 77666543 579999999999999999988887432 2 77777 6666 66554
No 79
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.53 E-value=3.1e-16 Score=148.64 Aligned_cols=219 Identities=15% Similarity=0.128 Sum_probs=162.5
Q ss_pred cCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCC
Q 012001 224 KLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFP 303 (473)
Q Consensus 224 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~ 303 (473)
.+++|+.|+++++ .+.......+.. +++|+.|+++++....... +..+++|+.|+++++. +. .+...+
T Consensus 32 ~~~~L~~L~Ls~n-~l~~~~~~~~~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~-l~-----~l~~~~ 99 (487)
T 3oja_A 32 SAWNVKELDLSGN-PLSQISAADLAP-FTKLELLNLSSNVLYETLD----LESLSTLRTLDLNNNY-VQ-----ELLVGP 99 (487)
T ss_dssp TGGGCCEEECCSS-CCCCCCGGGGTT-CTTCCEEECTTSCCEEEEE----CTTCTTCCEEECCSSE-EE-----EEEECT
T ss_pred cCCCccEEEeeCC-cCCCCCHHHHhC-CCCCCEEEeeCCCCCCCcc----cccCCCCCEEEecCCc-CC-----CCCCCC
Confidence 4569999999995 455443344555 8999999999987433322 5678999999999884 22 123458
Q ss_pred CCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC
Q 012001 304 MLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLT 383 (473)
Q Consensus 304 ~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 383 (473)
+|+.|++++|.+...... .+++|+.|+++++ .++.. .+..+..+++|+.|+++++. ++......+...+++|+
T Consensus 100 ~L~~L~L~~N~l~~~~~~----~l~~L~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L~ 172 (487)
T 3oja_A 100 SIETLHAANNNISRVSCS----RGQGKKNIYLANN-KITML-RDLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTLE 172 (487)
T ss_dssp TCCEEECCSSCCCCEEEC----CCSSCEEEECCSS-CCCSG-GGBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTCC
T ss_pred CcCEEECcCCcCCCCCcc----ccCCCCEEECCCC-CCCCC-CchhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCccc
Confidence 999999999988764432 4689999999984 55532 12234567999999999875 65544444445689999
Q ss_pred EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeec
Q 012001 384 SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDL 463 (473)
Q Consensus 384 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l 463 (473)
.|++++|. ++.. .... .+++|+.|++++|.++.... .+..+++|+.|++++| .++. ++.....+++|+.|++
T Consensus 173 ~L~Ls~N~-l~~~--~~~~-~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~l 244 (487)
T 3oja_A 173 HLNLQYNF-IYDV--KGQV-VFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNN-KLVL--IEKALRFSQNLEHFDL 244 (487)
T ss_dssp EEECTTSC-CCEE--ECCC-CCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTS-CCCE--ECTTCCCCTTCCEEEC
T ss_pred EEecCCCc-cccc--cccc-cCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCC-cCcc--cchhhccCCCCCEEEc
Confidence 99999966 5432 1122 58999999999999988654 3778999999999999 8884 5555567899999999
Q ss_pred CCCCCc
Q 012001 464 YRFVTF 469 (473)
Q Consensus 464 ~~c~~l 469 (473)
++|+-.
T Consensus 245 ~~N~l~ 250 (487)
T 3oja_A 245 RGNGFH 250 (487)
T ss_dssp TTCCBC
T ss_pred CCCCCc
Confidence 998743
No 80
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.53 E-value=7.3e-15 Score=142.09 Aligned_cols=216 Identities=20% Similarity=0.057 Sum_probs=139.7
Q ss_pred CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 201 CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 201 ~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
+++|++|++++|.++. ++. .+++|++|+++++. +.... ..+++|+.|+++++.. +.. ....++|
T Consensus 80 l~~L~~L~Ls~N~l~~--lp~--~l~~L~~L~Ls~N~-l~~l~-----~~l~~L~~L~L~~N~l-~~l-----p~~l~~L 143 (622)
T 3g06_A 80 PPELRTLEVSGNQLTS--LPV--LPPGLLELSIFSNP-LTHLP-----ALPSGLCKLWIFGNQL-TSL-----PVLPPGL 143 (622)
T ss_dssp CTTCCEEEECSCCCSC--CCC--CCTTCCEEEECSCC-CCCCC-----CCCTTCCEEECCSSCC-SCC-----CCCCTTC
T ss_pred CCCCCEEEcCCCcCCc--CCC--CCCCCCEEECcCCc-CCCCC-----CCCCCcCEEECCCCCC-CcC-----CCCCCCC
Confidence 3455555555554432 111 34555555555532 22211 1245666666665542 111 1124677
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
++|+++++.. .. ++ ..+++|+.|++.+|.+..-. ..+++|+.|+++++ .++. ++ ...++|+.|+
T Consensus 144 ~~L~Ls~N~l-~~-l~---~~~~~L~~L~L~~N~l~~l~-----~~~~~L~~L~Ls~N-~l~~--l~---~~~~~L~~L~ 207 (622)
T 3g06_A 144 QELSVSDNQL-AS-LP---ALPSELCKLWAYNNQLTSLP-----MLPSGLQELSVSDN-QLAS--LP---TLPSELYKLW 207 (622)
T ss_dssp CEEECCSSCC-SC-CC---CCCTTCCEEECCSSCCSCCC-----CCCTTCCEEECCSS-CCSC--CC---CCCTTCCEEE
T ss_pred CEEECcCCcC-CC-cC---CccCCCCEEECCCCCCCCCc-----ccCCCCcEEECCCC-CCCC--CC---CccchhhEEE
Confidence 7777776632 21 11 23568899999998876522 36789999999984 5543 11 1347999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+++|. ++.. ...+++|+.|++++|. ++... ..+++|+.|++++|.++.... .+++|+.|++++|
T Consensus 208 L~~N~-l~~l-----~~~~~~L~~L~Ls~N~-L~~lp-----~~l~~L~~L~Ls~N~L~~lp~----~~~~L~~L~Ls~N 271 (622)
T 3g06_A 208 AYNNR-LTSL-----PALPSGLKELIVSGNR-LTSLP-----VLPSELKELMVSGNRLTSLPM----LPSGLLSLSVYRN 271 (622)
T ss_dssp CCSSC-CSSC-----CCCCTTCCEEECCSSC-CSCCC-----CCCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSS
T ss_pred CcCCc-cccc-----CCCCCCCCEEEccCCc-cCcCC-----CCCCcCcEEECCCCCCCcCCc----ccccCcEEeCCCC
Confidence 99875 4421 1246899999999964 54322 377999999999998885432 5789999999999
Q ss_pred CCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 441 SNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 441 ~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
.++ .++.....+++|+.|++++|+
T Consensus 272 -~L~--~lp~~l~~l~~L~~L~L~~N~ 295 (622)
T 3g06_A 272 -QLT--RLPESLIHLSSETTVNLEGNP 295 (622)
T ss_dssp -CCC--SCCGGGGGSCTTCEEECCSCC
T ss_pred -CCC--cCCHHHhhccccCEEEecCCC
Confidence 888 345556689999999999987
No 81
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.52 E-value=3.2e-15 Score=133.49 Aligned_cols=205 Identities=14% Similarity=0.108 Sum_probs=109.4
Q ss_pred CCCCcEEecCCCCccchHHHHHHH-hcCcccceeeccccccCch---hHHHhhhCCCCCCeeEecCCcCChhHHHHHHhh
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLI-KGADYLQQLILAYSFWVSA---DLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNW 326 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~ 326 (473)
.++|++|+++++....... ..++ ..+++|++|+++++..... .....+..+++|+.|++++|.+.......+. .
T Consensus 90 ~~~L~~L~l~~n~l~~~~~-~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~-~ 167 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMP-PLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVR-A 167 (310)
T ss_dssp HSCCCEEEEESCCCBSCCC-CCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCC-C
T ss_pred cCceeEEEeeCCEeccchh-hhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhc-c
Confidence 3556666666654221110 0011 4456667777666532211 0112233566777777777766543333332 5
Q ss_pred CCCCCeEecCCCCCCChHHHHHH--HHhCCCCcEEecCCCCCCCHH--HHHHHHhcCCCCCEEEccCCCCCCHHHHHHHH
Q 012001 327 HGSLKELSLSKCSGVTDEELSFV--VQSHKELRKLDITCCRKITYA--SINSITKTCTSLTSLRMECCKLVSWEAFVLIG 402 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 402 (473)
+++|++|+++++.-....++... +..+++|++|++++|. ++.. ....+...+++|+.|+++++. ++......+.
T Consensus 168 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~ 245 (310)
T 4glp_A 168 FPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP 245 (310)
T ss_dssp CTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS
T ss_pred CCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhHH
Confidence 56777777776322222222111 1345677777777664 4421 122233456777777777744 4332111111
Q ss_pred hc---CccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 403 QQ---CQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 403 ~~---~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
. +++|++|++++|.++.. +..+ .++|+.|++++| +++.. +. ...+++|+.|++++++
T Consensus 246 -~~~~~~~L~~L~Ls~N~l~~l-p~~~--~~~L~~L~Ls~N-~l~~~--~~-~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 246 -RCMWSSALNSLNLSFAGLEQV-PKGL--PAKLRVLDLSSN-RLNRA--PQ-PDELPEVDNLTLDGNP 305 (310)
T ss_dssp -SCCCCTTCCCEECCSSCCCSC-CSCC--CSCCSCEECCSC-CCCSC--CC-TTSCCCCSCEECSSTT
T ss_pred -hccCcCcCCEEECCCCCCCch-hhhh--cCCCCEEECCCC-cCCCC--ch-hhhCCCccEEECcCCC
Confidence 2 26788888888877743 2223 368888888888 77642 22 3467888888888775
No 82
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.51 E-value=3.5e-14 Score=126.68 Aligned_cols=229 Identities=16% Similarity=0.116 Sum_probs=126.5
Q ss_pred CcCceeecccCCCCCHHHHHHHHh--hCCCCcEEeeccccCCCCccccc--ccCcccCeeeccCCCCCCh----HHHHHH
Q 012001 176 RKLKLLCLKWCIRVTDLGVELVAL--KCQEIRTLDLSYLPITEKCLPPV--VKLQYLEDLVLEGCHGIDD----DGLASV 247 (473)
Q Consensus 176 ~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~~~~~~~----~~~~~l 247 (473)
..++.+.+.++ .+++..+..+.. .+++|++|++++|.+.+.....+ ..+++|++|+++++. +.. .....+
T Consensus 64 ~~l~~l~l~~~-~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~ 141 (310)
T 4glp_A 64 LRVRRLTVGAA-QVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQ 141 (310)
T ss_dssp CCCCEEEECSC-CCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHT
T ss_pred cceeEEEEeCC-cCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHh
Confidence 34566666654 244443332221 34679999999998876666666 778899999998854 332 111122
Q ss_pred HhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHH-H--HHH
Q 012001 248 EYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI-K--AIG 324 (473)
Q Consensus 248 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~-~--~l~ 324 (473)
. .+++|++|+++++.. ....+..+..+++|+.|++++|.+..... . ...
T Consensus 142 ~-~~~~L~~L~Ls~n~l---------------------------~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~ 193 (310)
T 4glp_A 142 W-LKPGLKVLSIAQAHS---------------------------PAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCP 193 (310)
T ss_dssp T-BCSCCCEEEEECCSS---------------------------CCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCT
T ss_pred h-hccCCCEEEeeCCCc---------------------------chhhHHHhccCCCCCEEECCCCCCccchhhhHHHhh
Confidence 2 256666666665542 11222334445555555555555433211 0 001
Q ss_pred hhCCCCCeEecCCCCCCCh--HHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc---CCCCCEEEccCCCCCCHHHHH
Q 012001 325 NWHGSLKELSLSKCSGVTD--EELSFVVQSHKELRKLDITCCRKITYASINSITKT---CTSLTSLRMECCKLVSWEAFV 399 (473)
Q Consensus 325 ~~~~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~ 399 (473)
..+++|++|++++| .++. .....++..+++|++|+++++. +++.....+ .. +++|+.|+++++. ++. +.
T Consensus 194 ~~l~~L~~L~Ls~N-~l~~l~~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~-~~~~~~~~L~~L~Ls~N~-l~~--lp 267 (310)
T 4glp_A 194 HKFPAIQNLALRNT-GMETPTGVCAALAAAGVQPHSLDLSHNS-LRATVNPSA-PRCMWSSALNSLNLSFAG-LEQ--VP 267 (310)
T ss_dssp TSSCCCCSCBCCSS-CCCCHHHHHHHHHHHTCCCSSEECTTSC-CCCCCCSCC-SSCCCCTTCCCEECCSSC-CCS--CC
T ss_pred hcCCCCCEEECCCC-CCCchHHHHHHHHhcCCCCCEEECCCCC-CCccchhhH-HhccCcCcCCEEECCCCC-CCc--hh
Confidence 14556666666663 3432 1111234455666666666654 332110001 12 2678888887754 442 11
Q ss_pred HHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 400 LIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 400 ~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
.. -.++|+.|++++|.++... .+..+++|+.|++++| .+++
T Consensus 268 ~~--~~~~L~~L~Ls~N~l~~~~--~~~~l~~L~~L~L~~N-~l~~ 308 (310)
T 4glp_A 268 KG--LPAKLRVLDLSSNRLNRAP--QPDELPEVDNLTLDGN-PFLV 308 (310)
T ss_dssp SC--CCSCCSCEECCSCCCCSCC--CTTSCCCCSCEECSST-TTSC
T ss_pred hh--hcCCCCEEECCCCcCCCCc--hhhhCCCccEEECcCC-CCCC
Confidence 11 2378999999999888642 2567899999999999 7664
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.51 E-value=4e-14 Score=125.90 Aligned_cols=196 Identities=17% Similarity=0.185 Sum_probs=135.0
Q ss_pred ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh
Q 012001 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
....+++|++|++.++. +... ..+.. +++|+.|+++++....... +..+++|++|+++++. +.. ...+.
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~l--~~~~~-l~~L~~L~L~~n~i~~~~~----~~~l~~L~~L~L~~n~-l~~--~~~~~ 104 (308)
T 1h6u_A 36 TQADLDGITTLSAFGTG-VTTI--EGVQY-LNNLIGLELKDNQITDLAP----LKNLTKITELELSGNP-LKN--VSAIA 104 (308)
T ss_dssp CHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCCSCCEEECCSCC-CSC--CGGGT
T ss_pred cHHHcCCcCEEEeeCCC-ccCc--hhhhc-cCCCCEEEccCCcCCCChh----HccCCCCCEEEccCCc-CCC--chhhc
Confidence 34468899999999854 4332 23444 8999999999876333222 5678899999998875 332 13577
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (473)
.+++|+.|++++|.+.+.. .+ ..+++|++|+++++ .+++. .. +..+++|+.|++++|. +++... ...++
T Consensus 105 ~l~~L~~L~l~~n~l~~~~--~l-~~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L~l~~n~-l~~~~~---l~~l~ 173 (308)
T 1h6u_A 105 GLQSIKTLDLTSTQITDVT--PL-AGLSNLQVLYLDLN-QITNI--SP-LAGLTNLQYLSIGNAQ-VSDLTP---LANLS 173 (308)
T ss_dssp TCTTCCEEECTTSCCCCCG--GG-TTCTTCCEEECCSS-CCCCC--GG-GGGCTTCCEEECCSSC-CCCCGG---GTTCT
T ss_pred CCCCCCEEECCCCCCCCch--hh-cCCCCCCEEECCCC-ccCcC--cc-ccCCCCccEEEccCCc-CCCChh---hcCCC
Confidence 8889999999998876532 23 37788999998884 44432 11 5677888888888775 443222 35678
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
+|+.|+++++. +++.. . ...+++|+.|++++|.+++.. .+..+++|+.|++++| .++.
T Consensus 174 ~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N-~i~~ 231 (308)
T 1h6u_A 174 KLTTLKADDNK-ISDIS--P-LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQ-TITN 231 (308)
T ss_dssp TCCEEECCSSC-CCCCG--G-GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEE-EEEC
T ss_pred CCCEEECCCCc-cCcCh--h-hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCC-eeec
Confidence 88888888854 44322 1 237888888888888887665 3677888888888888 6653
No 84
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.50 E-value=2.8e-14 Score=112.28 Aligned_cols=105 Identities=14% Similarity=0.219 Sum_probs=84.9
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhc---CccCCeeeeccc-ccChhhhhhhhcC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQ---CQYLEELDITEN-EVNDEGLKSISRC 429 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~-~~~~~~~~~l~~~ 429 (473)
..|++|++++|. +++.++..+ ..|++|+.|++++|..++|.++..+... +++|++|+|++| .+||.++..++++
T Consensus 61 ~~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 367888888886 888877776 4788888888888888888888888742 468999999997 6999999888889
Q ss_pred CCCCeeecCCCCCcchHHH--HHHHhcCccCCe
Q 012001 430 SKLSSLKLGICSNITDEGL--KHVGSTCSMLKE 460 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~ 460 (473)
++|++|++++|+++++.++ ..+.+.+|+++.
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~V 171 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLEL 171 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCEE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcEE
Confidence 9999999999988998763 455567887764
No 85
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.48 E-value=8.7e-14 Score=123.75 Aligned_cols=196 Identities=17% Similarity=0.136 Sum_probs=147.5
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++.++.+.. +..+..+++|+.|+++++ .+..... +.. +++|++|+++++...... .+..+++
T Consensus 39 ~l~~L~~L~l~~~~i~~--l~~~~~l~~L~~L~L~~n-~i~~~~~--~~~-l~~L~~L~L~~n~l~~~~----~~~~l~~ 108 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELKDN-QITDLAP--LKN-LTKITELELSGNPLKNVS----AIAGLQS 108 (308)
T ss_dssp HHHTCCEEECTTSCCCC--CTTGGGCTTCCEEECCSS-CCCCCGG--GTT-CCSCCEEECCSCCCSCCG----GGTTCTT
T ss_pred HcCCcCEEEeeCCCccC--chhhhccCCCCEEEccCC-cCCCChh--Hcc-CCCCCEEEccCCcCCCch----hhcCCCC
Confidence 45799999999998764 456788999999999986 4444332 444 899999999998733321 2567899
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|+++++.. ... ..+..+++|+.|++++|.+.+... +. .+++|+.|+++++ .+++. .. +..+++|+.|
T Consensus 109 L~~L~l~~n~l-~~~--~~l~~l~~L~~L~l~~n~l~~~~~--l~-~l~~L~~L~l~~n-~l~~~--~~-l~~l~~L~~L 178 (308)
T 1h6u_A 109 IKTLDLTSTQI-TDV--TPLAGLSNLQVLYLDLNQITNISP--LA-GLTNLQYLSIGNA-QVSDL--TP-LANLSKLTTL 178 (308)
T ss_dssp CCEEECTTSCC-CCC--GGGTTCTTCCEEECCSSCCCCCGG--GG-GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEE
T ss_pred CCEEECCCCCC-CCc--hhhcCCCCCCEEECCCCccCcCcc--cc-CCCCccEEEccCC-cCCCC--hh-hcCCCCCCEE
Confidence 99999998853 322 237899999999999998876443 33 7899999999985 55542 22 6678999999
Q ss_pred ecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhh
Q 012001 360 DITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 360 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 423 (473)
+++++. +++... ...+++|+.|++++|. +++.. .+ ..+++|+.|++++|.++....
T Consensus 179 ~l~~n~-l~~~~~---l~~l~~L~~L~L~~N~-l~~~~--~l-~~l~~L~~L~l~~N~i~~~~~ 234 (308)
T 1h6u_A 179 KADDNK-ISDISP---LASLPNLIEVHLKNNQ-ISDVS--PL-ANTSNLFIVTLTNQTITNQPV 234 (308)
T ss_dssp ECCSSC-CCCCGG---GGGCTTCCEEECTTSC-CCBCG--GG-TTCTTCCEEEEEEEEEECCCE
T ss_pred ECCCCc-cCcChh---hcCCCCCCEEEccCCc-cCccc--cc-cCCCCCCEEEccCCeeecCCe
Confidence 999876 543322 3679999999999965 54432 23 489999999999998877543
No 86
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.48 E-value=2.6e-15 Score=131.80 Aligned_cols=203 Identities=17% Similarity=0.156 Sum_probs=96.6
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
+++++|+++++.++......+.++++|++|+++++ .+.......+.. +++|++|+++++..... . ...+..+++|+
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~L~~n~l~~~-~-~~~~~~l~~L~ 103 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRC-EIQTIEDGAYQS-LSHLSTLILTGNPIQSL-A-LGAFSGLSSLQ 103 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTC-CCCEECTTTTTT-CTTCCEEECTTCCCCEE-C-TTTTTTCTTCC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCC-cCCccCHHHccC-CcCCCEEECCCCccCcc-C-hhhhcCCcccc
Confidence 35667777666665444445556666666666663 233222112222 55555555555431110 0 01123344455
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
+|+++++. +.......+..+++|+.|++++|.+.... ++..+..+++|++|++
T Consensus 104 ~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------------l~~~~~~l~~L~~L~L 156 (276)
T 2z62_A 104 KLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFK--------------------------LPEYFSNLTNLEHLDL 156 (276)
T ss_dssp EEECTTSC-CCCSTTCCCTTCTTCCEEECCSSCCCCCC--------------------------CCGGGGGCTTCCEEEC
T ss_pred EEECCCCC-ccccCchhcccCCCCCEEECcCCccceec--------------------------CchhhccCCCCCEEEC
Confidence 55544432 11111112344445555555544433211 1222344555555555
Q ss_pred CCCCCCCHH---HHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 362 TCCRKITYA---SINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 362 ~~~~~~~~~---~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
+++. ++.. .+..+ ..++.|. .|+++++. ++......+ ...+|+.|++++|.++......+..+++|+.|++
T Consensus 157 s~N~-l~~~~~~~~~~l-~~L~~l~l~L~ls~n~-l~~~~~~~~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 231 (276)
T 2z62_A 157 SSNK-IQSIYCTDLRVL-HQMPLLNLSLDLSLNP-MNFIQPGAF--KEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231 (276)
T ss_dssp CSSC-CCEECGGGGHHH-HTCTTCCEEEECCSSC-CCEECTTSS--CSCCEEEEECCSSCCSCCCTTTTTTCCSCCEEEC
T ss_pred CCCC-CCcCCHHHhhhh-hhccccceeeecCCCc-ccccCcccc--CCCcccEEECCCCceeecCHhHhcccccccEEEc
Confidence 5543 2221 11111 1233333 56666633 332111111 3347888888888777666555667888888888
Q ss_pred CCC
Q 012001 438 GIC 440 (473)
Q Consensus 438 ~~~ 440 (473)
++|
T Consensus 232 ~~N 234 (276)
T 2z62_A 232 HTN 234 (276)
T ss_dssp CSS
T ss_pred cCC
Confidence 877
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.43 E-value=1.2e-14 Score=126.82 Aligned_cols=181 Identities=17% Similarity=0.121 Sum_probs=124.3
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
.++++.|+++++.. .... ...+..+++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|
T Consensus 36 ~~~l~~L~l~~n~l-~~~~-~~~~~~l~~L~~L~l~~n~-l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L 111 (270)
T 2o6q_A 36 PADTKKLDLQSNKL-SSLP-SKAFHRLTKLRLLYLNDNK-LQTLPAGIFKELKNLETLWVTDNKLQALPIGVFD-QLVNL 111 (270)
T ss_dssp CTTCSEEECCSSCC-SCCC-TTSSSSCTTCCEEECCSSC-CSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTT-TCSSC
T ss_pred CCCCCEEECcCCCC-CeeC-HHHhcCCCCCCEEECCCCc-cCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcc-cccCC
Confidence 35799999998763 2211 1124568899999998874 3333344567889999999999987654433333 67899
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .++... ...+..+++|++|+++++. ++..... ....+++|+.|+++++. ++......+. .+++|+.
T Consensus 112 ~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~~~~~-~l~~L~~ 185 (270)
T 2o6q_A 112 AELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE-LQSLPKG-VFDKLTSLKELRLYNNQ-LKRVPEGAFD-KLTELKT 185 (270)
T ss_dssp CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTTT-TCTTCCE
T ss_pred CEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc-CCccCHh-HccCCcccceeEecCCc-CcEeChhHhc-cCCCcCE
Confidence 99999884 444321 2234577899999999875 4432221 12467899999998864 4432222222 6889999
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
|++++|.++......+..+++|+.|++++|+
T Consensus 186 L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 186 LKLDNNQLKRVPEGAFDSLEKLKMLQLQENP 216 (270)
T ss_dssp EECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred EECCCCcCCcCCHHHhccccCCCEEEecCCC
Confidence 9999998887766667788999999999883
No 88
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.43 E-value=2.3e-14 Score=125.18 Aligned_cols=180 Identities=14% Similarity=0.120 Sum_probs=84.3
Q ss_pred ccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhh
Q 012001 221 PVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLH 300 (473)
Q Consensus 221 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~ 300 (473)
....+++|+.|.+.++. +... ..+.. +++|+.|+++++...... .+..+++|++|+++++. +.......+.
T Consensus 36 ~~~~l~~L~~L~l~~~~-i~~~--~~l~~-l~~L~~L~l~~n~l~~~~----~l~~l~~L~~L~L~~n~-l~~~~~~~~~ 106 (272)
T 3rfs_A 36 TQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVRYLALGGNKLHDIS----ALKELTNLTYLILTGNQ-LQSLPNGVFD 106 (272)
T ss_dssp CHHHHTTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECTTSCCCCCG----GGTTCTTCCEEECTTSC-CCCCCTTTTT
T ss_pred ccccccceeeeeeCCCC-cccc--ccccc-CCCCcEEECCCCCCCCch----hhcCCCCCCEEECCCCc-cCccChhHhc
Confidence 34456777777777643 3221 12333 677777777766522211 23445666666666552 3323333345
Q ss_pred CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCC
Q 012001 301 NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCT 380 (473)
Q Consensus 301 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 380 (473)
.+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+. .++
T Consensus 107 ~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~L~~n-~l~~~-~~~~~~--------------------------~l~ 157 (272)
T 3rfs_A 107 KLTNLKELVLVENQLQSLPDGVFD-KLTNLTYLNLAHN-QLQSL-PKGVFD--------------------------KLT 157 (272)
T ss_dssp TCTTCCEEECTTSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCC-CTTTTT--------------------------TCT
T ss_pred CCcCCCEEECCCCcCCccCHHHhc-cCCCCCEEECCCC-ccCcc-CHHHhc--------------------------cCc
Confidence 555666666666554432221121 3445555555442 22211 011122 344
Q ss_pred CCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 381 SLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 381 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 158 ~L~~L~l~~n~-l~~~~~~~~-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N 215 (272)
T 3rfs_A 158 NLTELDLSYNQ-LQSLPEGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 215 (272)
T ss_dssp TCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred cCCEEECCCCC-cCccCHHHh-cCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCC
Confidence 55555555432 221111111 14555666666665555544444455566666666655
No 89
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=99.43 E-value=1.6e-13 Score=107.94 Aligned_cols=105 Identities=19% Similarity=0.212 Sum_probs=79.8
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
.+|+.|++++|.+++.++..+. .+++|++|++++|..++|.++..+... +++|++|++++|.++++.++..+. .+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~-~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH-HF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG-GC
T ss_pred ceEeEEeCcCCCccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh-cC
Confidence 3678888888888888887775 788888888888888888887777642 457888888888888888887775 57
Q ss_pred CCCCEEEccCCCCCCHHH--HHHHHhcCccCC
Q 012001 380 TSLTSLRMECCKLVSWEA--FVLIGQQCQYLE 409 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~ 409 (473)
++|++|++++|+.+++.+ ...+...+|+++
T Consensus 139 ~~L~~L~L~~c~~Itd~gl~~~~L~~~lP~l~ 170 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170 (176)
T ss_dssp TTCCEEEEESCTTCCCHHHHHHHHHHHCTTCE
T ss_pred CCCCEEECCCCCCCCchHHHHHHHHHHCCCcE
Confidence 888888888888888765 344455666654
No 90
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.43 E-value=7.2e-15 Score=128.96 Aligned_cols=182 Identities=17% Similarity=0.169 Sum_probs=113.6
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+++|++|+++++ .+.......+..+++|+.|++++|.+.......+. .+++|++|+++++ .+.... ...+..+++
T Consensus 50 ~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~~-~~~~~~l~~ 125 (276)
T 2z62_A 50 SFPELQVLDLSRC-EIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFS-GLSSLQKLVAVET-NLASLE-NFPIGHLKT 125 (276)
T ss_dssp TCTTCSEEECTTC-CCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTT-TCTTCCEEECTTS-CCCCST-TCCCTTCTT
T ss_pred cccCCcEEECCCC-cCCccCHHHccCCcCCCEEECCCCccCccChhhhc-CCccccEEECCCC-CccccC-chhcccCCC
Confidence 3455555555554 22222333456667777777777766544333333 5677777777763 332210 111456789
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCH---HHHHHHHhcCccCC-eeeecccccChhhhhhhhcCCC
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSW---EAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~---~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
|++|+++++. ++...+......+++|+.|++++|. ++. ..+..+. .++.|. .|++++|.++......+ ...+
T Consensus 126 L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~-~L~~l~l~L~ls~n~l~~~~~~~~-~~~~ 201 (276)
T 2z62_A 126 LKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVLH-QMPLLNLSLDLSLNPMNFIQPGAF-KEIR 201 (276)
T ss_dssp CCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHHH-TCTTCCEEEECCSSCCCEECTTSS-CSCC
T ss_pred CCEEECcCCc-cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhhh-hccccceeeecCCCcccccCcccc-CCCc
Confidence 9999998875 4432222334578999999999965 443 3344333 444444 89999999887654433 3558
Q ss_pred CCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCC
Q 012001 432 LSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFV 467 (473)
Q Consensus 432 L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~ 467 (473)
|+.|++++| .++... ......+++|++|++++++
T Consensus 202 L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~N~ 235 (276)
T 2z62_A 202 LKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP 235 (276)
T ss_dssp EEEEECCSS-CCSCCC-TTTTTTCCSCCEEECCSSC
T ss_pred ccEEECCCC-ceeecC-HhHhcccccccEEEccCCc
Confidence 999999999 787532 2334579999999999654
No 91
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.41 E-value=3.3e-14 Score=125.14 Aligned_cols=201 Identities=14% Similarity=0.009 Sum_probs=116.7
Q ss_pred cccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhC
Q 012001 222 VVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHN 301 (473)
Q Consensus 222 l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~ 301 (473)
+.++++++++++.++ .+..... ...++++.|+++++..... . ...+..+++|+.|+++++. +... . ....
T Consensus 6 ~~~l~~l~~l~~~~~-~l~~ip~----~~~~~l~~L~L~~N~l~~~-~-~~~~~~l~~L~~L~L~~n~-l~~~-~-~~~~ 75 (290)
T 1p9a_G 6 VSKVASHLEVNCDKR-NLTALPP----DLPKDTTILHLSENLLYTF-S-LATLMPYTRLTQLNLDRAE-LTKL-Q-VDGT 75 (290)
T ss_dssp EECSTTCCEEECTTS-CCSSCCS----CCCTTCCEEECTTSCCSEE-E-GGGGTTCTTCCEEECTTSC-CCEE-E-CCSC
T ss_pred ccccCCccEEECCCC-CCCcCCC----CCCCCCCEEEcCCCcCCcc-C-HHHhhcCCCCCEEECCCCc-cCcc-c-CCCC
Confidence 456778888888773 3432211 1135788888887763221 1 1224567888888888764 2221 1 1256
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
+++|+.|++++|.+..- ...+ ..+++|+.|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++
T Consensus 76 l~~L~~L~Ls~N~l~~l-~~~~-~~l~~L~~L~l~~N-~l~~l-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~ 149 (290)
T 1p9a_G 76 LPVLGTLDLSHNQLQSL-PLLG-QTLPALTVLDVSFN-RLTSL-PLGALRGLGELQELYLKGNE-LKTLPP-GLLTPTPK 149 (290)
T ss_dssp CTTCCEEECCSSCCSSC-CCCT-TTCTTCCEEECCSS-CCCCC-CSSTTTTCTTCCEEECTTSC-CCCCCT-TTTTTCTT
T ss_pred CCcCCEEECCCCcCCcC-chhh-ccCCCCCEEECCCC-cCccc-CHHHHcCCCCCCEEECCCCC-CCccCh-hhcccccC
Confidence 77888888888876521 1111 25678888888773 44321 01234566788888887764 432211 11235677
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCC
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICS 441 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 441 (473)
|+.|+++++. ++..... ....+++|+.|++++|.++... ..+...++|+.|++++|+
T Consensus 150 L~~L~L~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~l~~ip-~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 150 LEKLSLANNN-LTELPAG-LLNGLENLDTLLLQENSLYTIP-KGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCEEECTTSC-CSCCCTT-TTTTCTTCCEEECCSSCCCCCC-TTTTTTCCCSEEECCSCC
T ss_pred CCEEECCCCc-CCccCHH-HhcCcCCCCEEECCCCcCCccC-hhhcccccCCeEEeCCCC
Confidence 8888887743 4322111 1225677888888887776433 344456678888887773
No 92
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.38 E-value=9.4e-14 Score=121.34 Aligned_cols=159 Identities=14% Similarity=0.091 Sum_probs=98.2
Q ss_pred hhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
+..+++|+.|++++|.+.+. ..+. .+++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....
T Consensus 59 l~~l~~L~~L~l~~n~l~~~--~~l~-~l~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~ 131 (272)
T 3rfs_A 59 IQYLPNVRYLALGGNKLHDI--SALK-ELTNLTYLILTGN-QLQSL-PNGVFDKLTNLKELVLVENQ-LQSLPD-GVFDK 131 (272)
T ss_dssp GGGCTTCCEEECTTSCCCCC--GGGT-TCTTCCEEECTTS-CCCCC-CTTTTTTCTTCCEEECTTSC-CCCCCT-TTTTT
T ss_pred cccCCCCcEEECCCCCCCCc--hhhc-CCCCCCEEECCCC-ccCcc-ChhHhcCCcCCCEEECCCCc-CCccCH-HHhcc
Confidence 34455555555555554432 1222 4555666666553 33211 11123455677777776654 332111 11245
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccC
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSML 458 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L 458 (473)
+++|+.|++++|. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++| .++... ......+++|
T Consensus 132 l~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~l~~L 207 (272)
T 3rfs_A 132 LTNLTYLNLAHNQ-LQSLPKGVF-DKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQN-QLKSVP-DGVFDRLTSL 207 (272)
T ss_dssp CTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCSCCC-TTTTTTCTTC
T ss_pred CCCCCEEECCCCc-cCccCHHHh-ccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCC-cCCccC-HHHHhCCcCC
Confidence 7788888888764 443221112 37899999999999999877666788999999999999 887522 2334589999
Q ss_pred CeeecCCCCC
Q 012001 459 KELDLYRFVT 468 (473)
Q Consensus 459 ~~L~l~~c~~ 468 (473)
++|++++|+-
T Consensus 208 ~~L~l~~N~~ 217 (272)
T 3rfs_A 208 QYIWLHDNPW 217 (272)
T ss_dssp CEEECCSSCB
T ss_pred CEEEccCCCc
Confidence 9999998753
No 93
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.36 E-value=2.8e-13 Score=112.05 Aligned_cols=149 Identities=17% Similarity=0.156 Sum_probs=68.5
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+++|++|+++++.. . .++ .+..+++|+.|++++|.+.+.. .+. .+++|++|++++ +.+++.. ...+..+++|
T Consensus 43 l~~L~~L~l~~n~i-~-~l~-~l~~l~~L~~L~l~~n~~~~~~--~l~-~l~~L~~L~l~~-n~l~~~~-~~~l~~l~~L 114 (197)
T 4ezg_A 43 MNSLTYITLANINV-T-DLT-GIEYAHNIKDLTINNIHATNYN--PIS-GLSNLERLRIMG-KDVTSDK-IPNLSGLTSL 114 (197)
T ss_dssp HHTCCEEEEESSCC-S-CCT-TGGGCTTCSEEEEESCCCSCCG--GGT-TCTTCCEEEEEC-TTCBGGG-SCCCTTCTTC
T ss_pred cCCccEEeccCCCc-c-ChH-HHhcCCCCCEEEccCCCCCcch--hhh-cCCCCCEEEeEC-CccCccc-ChhhcCCCCC
Confidence 45667777666532 2 222 4556666666666666443321 222 455666666655 2333211 1112344555
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeee
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLK 436 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 436 (473)
++|++++|. +++.....+ ..+++|+.|++++|..+++.. .+ ..+++|+.|++++|.+++.. .+..+++|+.|+
T Consensus 115 ~~L~Ls~n~-i~~~~~~~l-~~l~~L~~L~L~~n~~i~~~~--~l-~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~ 187 (197)
T 4ezg_A 115 TLLDISHSA-HDDSILTKI-NTLPKVNSIDLSYNGAITDIM--PL-KTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLY 187 (197)
T ss_dssp CEEECCSSB-CBGGGHHHH-TTCSSCCEEECCSCTBCCCCG--GG-GGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEE
T ss_pred CEEEecCCc-cCcHhHHHH-hhCCCCCEEEccCCCCccccH--hh-cCCCCCCEEECCCCCCcChH--HhccCCCCCEEE
Confidence 555555543 333222222 345555555555543233221 11 14455555555555544422 344455555555
Q ss_pred cCCC
Q 012001 437 LGIC 440 (473)
Q Consensus 437 l~~~ 440 (473)
+++|
T Consensus 188 l~~N 191 (197)
T 4ezg_A 188 AFSQ 191 (197)
T ss_dssp ECBC
T ss_pred eeCc
Confidence 5555
No 94
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.36 E-value=9.7e-13 Score=115.87 Aligned_cols=170 Identities=19% Similarity=0.155 Sum_probs=101.0
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++......+ +..+++|++|+++++.. ..... +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 45 l~~L~~L~l~~~~i~~~~~----~~~l~~L~~L~L~~n~l-~~~~~--l~~l~~L~~L~l~~n~l~~~~--~l~-~l~~L 114 (291)
T 1h6t_A 45 LNSIDQIIANNSDIKSVQG----IQYLPNVTKLFLNGNKL-TDIKP--LANLKNLGWLFLDENKVKDLS--SLK-DLKKL 114 (291)
T ss_dssp HHTCCEEECTTSCCCCCTT----GGGCTTCCEEECCSSCC-CCCGG--GTTCTTCCEEECCSSCCCCGG--GGT-TCTTC
T ss_pred cCcccEEEccCCCcccChh----HhcCCCCCEEEccCCcc-CCCcc--cccCCCCCEEECCCCcCCCCh--hhc-cCCCC
Confidence 5678888887765322211 45567788888777632 22221 667777888888777765522 232 56777
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .+++. ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. +++... ...+++|+.
T Consensus 115 ~~L~L~~n-~i~~~---~~l~~l~~L~~L~l~~n~-l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l~~L~~ 182 (291)
T 1h6t_A 115 KSLSLEHN-GISDI---NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 182 (291)
T ss_dssp CEEECTTS-CCCCC---GGGGGCTTCCEEECCSSC-CCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CEEECCCC-cCCCC---hhhcCCCCCCEEEccCCc-CCcc---hhhccCCCCCEEEccCCc-cccchh---hcCCCccCE
Confidence 77777774 44431 124456777777777664 4332 122456777777777654 433221 236677777
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
|++++|.+++. ..+..+++|+.|++++| .++.
T Consensus 183 L~L~~N~i~~l--~~l~~l~~L~~L~l~~n-~i~~ 214 (291)
T 1h6t_A 183 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 214 (291)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEEEEEE-EEEC
T ss_pred EECCCCcCCCC--hhhccCCCCCEEECcCC-cccC
Confidence 77777766654 23566777777777776 5543
No 95
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.36 E-value=1.5e-13 Score=119.95 Aligned_cols=138 Identities=14% Similarity=0.101 Sum_probs=92.9
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
..+++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|++|+++++ .++... ...+..++
T Consensus 82 ~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~~-~~~~~~l~ 157 (270)
T 2o6q_A 82 KELKNLETLWVTDNK-LQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFD-SLTKLTYLSLGYN-ELQSLP-KGVFDKLT 157 (270)
T ss_dssp SSCTTCCEEECCSSC-CCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred cCCCCCCEEECCCCc-CCcCCHhHcccccCCCEEECCCCccCeeCHHHhC-cCcCCCEEECCCC-cCCccC-HhHccCCc
Confidence 345666666666653 3333334567889999999999987765444343 7899999999984 444321 22355789
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
+|++|+++++. ++...... ...+++|+.|+++++. ++......+ ..+++|+.|++++|.+..
T Consensus 158 ~L~~L~L~~n~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~~~c 219 (270)
T 2o6q_A 158 SLKELRLYNNQ-LKRVPEGA-FDKLTELKTLKLDNNQ-LKRVPEGAF-DSLEKLKMLQLQENPWDC 219 (270)
T ss_dssp TCCEEECCSSC-CSCCCTTT-TTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCEEECCSSCBCC
T ss_pred ccceeEecCCc-CcEeChhH-hccCCCcCEEECCCCc-CCcCCHHHh-ccccCCCEEEecCCCeeC
Confidence 99999999875 44322211 2468999999999964 543222222 378999999999987643
No 96
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.33 E-value=2.5e-14 Score=122.58 Aligned_cols=109 Identities=17% Similarity=0.068 Sum_probs=68.1
Q ss_pred hCCCCc---EEecCCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeeccc-ccChhhhhhh
Q 012001 352 SHKELR---KLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITEN-EVNDEGLKSI 426 (473)
Q Consensus 352 ~~~~L~---~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~l 426 (473)
.+++|+ .|+++++..++......+ ..+++|+ .|+++++. ++......+ ..++|+.|++++| .++......+
T Consensus 125 ~l~~L~~L~~L~l~~N~~l~~i~~~~~-~~l~~L~~~L~l~~n~-l~~i~~~~~--~~~~L~~L~L~~n~~l~~i~~~~~ 200 (239)
T 2xwt_C 125 KVYSTDIFFILEITDNPYMTSIPVNAF-QGLCNETLTLKLYNNG-FTSVQGYAF--NGTKLDAVYLNKNKYLTVIDKDAF 200 (239)
T ss_dssp TCCBCCSEEEEEEESCTTCCEECTTTT-TTTBSSEEEEECCSCC-CCEECTTTT--TTCEEEEEECTTCTTCCEECTTTT
T ss_pred cccccccccEEECCCCcchhhcCcccc-cchhcceeEEEcCCCC-CcccCHhhc--CCCCCCEEEcCCCCCcccCCHHHh
Confidence 444555 666666533432221111 3567777 78777643 432211112 2378999999999 4887766667
Q ss_pred hcC-CCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCCc
Q 012001 427 SRC-SKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 427 ~~~-~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~l 469 (473)
..+ ++|+.|++++| .++. ++.. .+++|+.|++.+|..+
T Consensus 201 ~~l~~~L~~L~l~~N-~l~~--l~~~--~~~~L~~L~l~~~~~l 239 (239)
T 2xwt_C 201 GGVYSGPSLLDVSQT-SVTA--LPSK--GLEHLKELIARNTWTL 239 (239)
T ss_dssp TTCSBCCSEEECTTC-CCCC--CCCT--TCTTCSEEECTTC---
T ss_pred hccccCCcEEECCCC-cccc--CChh--HhccCceeeccCccCC
Confidence 788 99999999998 7774 2221 5889999999988764
No 97
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.32 E-value=2.6e-14 Score=122.45 Aligned_cols=111 Identities=9% Similarity=0.024 Sum_probs=55.6
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccC---eeeccCCCCCChHHHHHHHhcCCCCc-EEecCCCCccchHHHHHHHh
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLE---DLVLEGCHGIDDDGLASVEYSCKSLK-ALNLSKCQNISHVGLSSLIK 275 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~~~~~~~~~~~~ 275 (473)
.+++|++|++++|.++. ++.+..+++|+ .|+++++..+.......+.. +++|+ .|+++++.. ..... ..+.
T Consensus 103 ~l~~L~~L~l~~n~l~~--lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~-l~~L~~~L~l~~n~l-~~i~~-~~~~ 177 (239)
T 2xwt_C 103 ELPLLKFLGIFNTGLKM--FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-LCNETLTLKLYNNGF-TSVQG-YAFN 177 (239)
T ss_dssp CCTTCCEEEEEEECCCS--CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTT-TBSSEEEEECCSCCC-CEECT-TTTT
T ss_pred CCCCCCEEeCCCCCCcc--ccccccccccccccEEECCCCcchhhcCcccccc-hhcceeEEEcCCCCC-cccCH-hhcC
Confidence 45677777777766543 33355555565 67776642343322222333 56666 666665542 11110 0111
Q ss_pred cCcccceeeccccccCchhHHHhhhCC-CCCCeeEecCCcCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNF-PMLQSIKFEDCPVA 316 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~~~ 316 (473)
.++|++|+++++..+.......+..+ ++|+.|+++++.+.
T Consensus 178 -~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~ 218 (239)
T 2xwt_C 178 -GTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218 (239)
T ss_dssp -TCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC
T ss_pred -CCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc
Confidence 24666666666532332323344555 66666666665544
No 98
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.29 E-value=5.3e-12 Score=104.35 Aligned_cols=130 Identities=16% Similarity=0.191 Sum_probs=72.8
Q ss_pred CCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCC
Q 012001 175 CRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSL 254 (473)
Q Consensus 175 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L 254 (473)
+++|++|+++++ .+...+ ....+++|++|++++|.+++..+..+..+++|+.|+++++ .+.+..+..+.. +++|
T Consensus 65 l~~L~~L~l~~n-~~~~~~---~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n-~i~~~~~~~l~~-l~~L 138 (197)
T 4ezg_A 65 AHNIKDLTINNI-HATNYN---PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS-AHDDSILTKINT-LPKV 138 (197)
T ss_dssp CTTCSEEEEESC-CCSCCG---GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSS-BCBGGGHHHHTT-CSSC
T ss_pred CCCCCEEEccCC-CCCcch---hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCC-ccCcHhHHHHhh-CCCC
Confidence 555666666554 222221 1235677888888877776656667777777888877774 455434444554 7777
Q ss_pred cEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 255 KALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 255 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
++|+++++..+++.. .+..+++|+.|+++++.. .+ . ..+..+++|+.|+++++.++
T Consensus 139 ~~L~L~~n~~i~~~~---~l~~l~~L~~L~l~~n~i-~~-~-~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 139 NSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGV-HD-Y-RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CEEECCSCTBCCCCG---GGGGCSSCCEEECTTBCC-CC-C-TTGGGCSSCCEEEECBC---
T ss_pred CEEEccCCCCccccH---hhcCCCCCCEEECCCCCC-cC-h-HHhccCCCCCEEEeeCcccC
Confidence 777777665333321 244456666666665532 21 1 14455566666666665543
No 99
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.29 E-value=6.1e-12 Score=110.76 Aligned_cols=182 Identities=16% Similarity=0.157 Sum_probs=131.7
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (473)
.....+++|+.|+++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++.. .. ...+
T Consensus 40 ~~~~~l~~L~~L~l~~~~-i~~~--~~~~~-l~~L~~L~L~~n~l~~~~~----l~~l~~L~~L~l~~n~l-~~--~~~l 108 (291)
T 1h6t_A 40 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LANLKNLGWLFLDENKV-KD--LSSL 108 (291)
T ss_dssp ECHHHHHTCCEEECTTSC-CCCC--TTGGG-CTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC-CC--GGGG
T ss_pred cchhhcCcccEEEccCCC-cccC--hhHhc-CCCCCEEEccCCccCCCcc----cccCCCCCEEECCCCcC-CC--Chhh
Confidence 344568899999999854 4332 22444 8999999999887433222 66789999999998743 32 3348
Q ss_pred hCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
..+++|+.|++++|.+.+. ..+. .+++|+.|+++++ .+++. ..+..+++|+.|++++|. +++... ...+
T Consensus 109 ~~l~~L~~L~L~~n~i~~~--~~l~-~l~~L~~L~l~~n-~l~~~---~~l~~l~~L~~L~L~~N~-l~~~~~---l~~l 177 (291)
T 1h6t_A 109 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 177 (291)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCCEEECCSS-CCCCC---GGGGGCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEECCCCcCCCC--hhhc-CCCCCCEEEccCC-cCCcc---hhhccCCCCCEEEccCCc-cccchh---hcCC
Confidence 8899999999999987763 2333 7899999999984 55542 346678999999999875 554322 4578
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhh
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSIS 427 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 427 (473)
++|+.|++++|. +++. ..+ ..+++|+.|++++|.+++.+.....
T Consensus 178 ~~L~~L~L~~N~-i~~l--~~l-~~l~~L~~L~l~~n~i~~~~~~~~~ 221 (291)
T 1h6t_A 178 TKLQNLYLSKNH-ISDL--RAL-AGLKNLDVLELFSQECLNKPINHQS 221 (291)
T ss_dssp TTCCEEECCSSC-CCBC--GGG-TTCTTCSEEEEEEEEEECCCEECCS
T ss_pred CccCEEECCCCc-CCCC--hhh-ccCCCCCEEECcCCcccCCcccccc
Confidence 999999999964 5542 233 3889999999999988876654443
No 100
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.28 E-value=5.5e-12 Score=121.94 Aligned_cols=170 Identities=18% Similarity=0.149 Sum_probs=109.1
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++|+.|+++++...... -+..+++|+.|+++++. +....+ +..+++|+.|++++|.+.+.. .+. .+++|
T Consensus 42 L~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls~N~-l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~-~l~~L 111 (605)
T 1m9s_A 42 LNSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLNGNK-LTDIKP--LTNLKNLGWLFLDENKIKDLS--SLK-DLKKL 111 (605)
T ss_dssp HTTCCCCBCTTCCCCCCT----TGGGCTTCCEEECTTSC-CCCCGG--GGGCTTCCEEECCSSCCCCCT--TST-TCTTC
T ss_pred CCCCCEEECcCCCCCCCh----HHccCCCCCEEEeeCCC-CCCChh--hccCCCCCEEECcCCCCCCCh--hhc-cCCCC
Confidence 677888888876532221 14567888888888774 322222 677888888888888766422 232 67788
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++| .+.+ + ..+..+++|+.|++++|. ++.. .....+++|+.|++++|. ++.... ...+++|+.
T Consensus 112 ~~L~Ls~N-~l~~--l-~~l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~ 179 (605)
T 1m9s_A 112 KSLSLEHN-GISD--I-NGLVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTKLQN 179 (605)
T ss_dssp CEEECTTS-CCCC--C-GGGGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTTCCE
T ss_pred CEEEecCC-CCCC--C-ccccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCCCCE
Confidence 88888774 4443 1 124567788888887765 4432 223467788888887754 433211 236778888
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcch
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITD 445 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~ 445 (473)
|+|++|.+++. ..+..+++|+.|++++| .++.
T Consensus 180 L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N-~l~~ 211 (605)
T 1m9s_A 180 LYLSKNHISDL--RALAGLKNLDVLELFSQ-ECLN 211 (605)
T ss_dssp EECCSSCCCBC--GGGTTCTTCSEEECCSE-EEEC
T ss_pred EECcCCCCCCC--hHHccCCCCCEEEccCC-cCcC
Confidence 88888777764 34667778888888877 5553
No 101
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.25 E-value=4.9e-12 Score=122.29 Aligned_cols=184 Identities=16% Similarity=0.157 Sum_probs=134.0
Q ss_pred cccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhh
Q 012001 220 PPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCL 299 (473)
Q Consensus 220 ~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l 299 (473)
..+..+++|+.|.++++. +... ..+.. +++|+.|+++++....... +..+++|+.|+++++.. .. +..+
T Consensus 37 ~~~~~L~~L~~L~l~~n~-i~~l--~~l~~-l~~L~~L~Ls~N~l~~~~~----l~~l~~L~~L~Ls~N~l-~~--l~~l 105 (605)
T 1m9s_A 37 VTQNELNSIDQIIANNSD-IKSV--QGIQY-LPNVTKLFLNGNKLTDIKP----LTNLKNLGWLFLDENKI-KD--LSSL 105 (605)
T ss_dssp ECHHHHTTCCCCBCTTCC-CCCC--TTGGG-CTTCCEEECTTSCCCCCGG----GGGCTTCCEEECCSSCC-CC--CTTS
T ss_pred cchhcCCCCCEEECcCCC-CCCC--hHHcc-CCCCCEEEeeCCCCCCChh----hccCCCCCEEECcCCCC-CC--Chhh
Confidence 345578899999999854 4332 23444 8999999999887433222 66789999999998843 22 2367
Q ss_pred hCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcC
Q 012001 300 HNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTC 379 (473)
Q Consensus 300 ~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 379 (473)
..+++|+.|++++|.+.+. ..+. .+++|+.|++++| .+++. ..+..+++|+.|++++|. ++.... ...+
T Consensus 106 ~~l~~L~~L~Ls~N~l~~l--~~l~-~l~~L~~L~Ls~N-~l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l 174 (605)
T 1m9s_A 106 KDLKKLKSLSLEHNGISDI--NGLV-HLPQLESLYLGNN-KITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGL 174 (605)
T ss_dssp TTCTTCCEEECTTSCCCCC--GGGG-GCTTCSEEECCSS-CCCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTC
T ss_pred ccCCCCCEEEecCCCCCCC--cccc-CCCccCEEECCCC-ccCCc---hhhcccCCCCEEECcCCc-CCCchh---hccC
Confidence 8899999999999988763 2333 7899999999985 55542 346678999999999886 543322 4678
Q ss_pred CCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcC
Q 012001 380 TSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRC 429 (473)
Q Consensus 380 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~ 429 (473)
++|+.|++++|. +++. ..+. .+++|+.|++++|.+++.....+..+
T Consensus 175 ~~L~~L~Ls~N~-i~~l--~~l~-~l~~L~~L~L~~N~l~~~p~~~~~~l 220 (605)
T 1m9s_A 175 TKLQNLYLSKNH-ISDL--RALA-GLKNLDVLELFSQECLNKPINHQSNL 220 (605)
T ss_dssp TTCCEEECCSSC-CCBC--GGGT-TCTTCSEEECCSEEEECCCCCCCSSC
T ss_pred CCCCEEECcCCC-CCCC--hHHc-cCCCCCEEEccCCcCcCCcccccccE
Confidence 999999999965 5542 3333 88999999999998887765544433
No 102
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.24 E-value=1.1e-12 Score=117.97 Aligned_cols=222 Identities=15% Similarity=0.095 Sum_probs=123.7
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCc--cchHHHHHHHhcCcccceeecccccc---CchhHHHhh
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN--ISHVGLSSLIKGADYLQQLILAYSFW---VSADLSKCL 299 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~--~~~~~~~~~~~~~~~L~~L~l~~~~~---~~~~~~~~l 299 (473)
+++|+++.+.. .+...+..++.. |++|+.+++..+.. +... .+..+.++..+....... ........+
T Consensus 100 ~~~L~~l~L~~--~i~~I~~~aF~~-~~~L~~l~l~~n~i~~i~~~----aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f 172 (329)
T 3sb4_A 100 KQTLEKVILSE--KIKNIEDAAFKG-CDNLKICQIRKKTAPNLLPE----ALADSVTAIFIPLGSSDAYRFKNRWEHFAF 172 (329)
T ss_dssp CTTCCC-CBCT--TCCEECTTTTTT-CTTCCEEEBCCSSCCEECTT----SSCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred cCCCcEEECCc--cccchhHHHhhc-CcccceEEcCCCCccccchh----hhcCCCceEEecCcchhhhhcccccccccc
Confidence 67777777765 333333233444 77788887776542 2121 123344555554433100 000011123
Q ss_pred hCCCCCC-eeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 300 HNFPMLQ-SIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 300 ~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
..+..|+ .+.+..................+++.+.+.+ .+....+..+...|++|++++++++. ++..+..++ ..
T Consensus 173 ~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~~aF-~~ 248 (329)
T 3sb4_A 173 IEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPDFTF-AQ 248 (329)
T ss_dssp EESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECTTTT-TT
T ss_pred ccccccceeEEecCCCcHHHHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecHhhh-hC
Confidence 3445555 4444432211111111111245677777765 35556666666668899999988643 333222222 46
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHhcCccCC-eeeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCcc
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQQCQYLE-ELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSM 457 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~ 457 (473)
|++|+.+++... ++.-+-..+. +|++|+ .+++.+ .++..+..++..|++|+.|++.++ +++..+-..+. +|++
T Consensus 249 ~~~L~~l~l~~n--i~~I~~~aF~-~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n-~i~~I~~~aF~-~~~~ 322 (329)
T 3sb4_A 249 KKYLLKIKLPHN--LKTIGQRVFS-NCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGD-KITTLGDELFG-NGVP 322 (329)
T ss_dssp CTTCCEEECCTT--CCEECTTTTT-TCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSS-CCCEECTTTTC-TTCC
T ss_pred CCCCCEEECCcc--cceehHHHhh-CChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCC-ccCccchhhhc-CCcc
Confidence 888999988762 4332222233 888898 999987 666666677888999999999887 77754444444 7888
Q ss_pred CCeeec
Q 012001 458 LKELDL 463 (473)
Q Consensus 458 L~~L~l 463 (473)
|+.|..
T Consensus 323 L~~ly~ 328 (329)
T 3sb4_A 323 SKLIYK 328 (329)
T ss_dssp CCEEEC
T ss_pred hhhhcc
Confidence 888753
No 103
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.23 E-value=9.1e-13 Score=113.61 Aligned_cols=178 Identities=13% Similarity=0.064 Sum_probs=122.1
Q ss_pred CCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCe
Q 012001 253 SLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKE 332 (473)
Q Consensus 253 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~ 332 (473)
..+.+++++... +... ..-.++++.|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|+.
T Consensus 15 ~~~~l~~~~~~l-~~~p----~~~~~~l~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 87 (251)
T 3m19_A 15 GKKEVDCQGKSL-DSVP----SGIPADTEKLDLQSTG-LATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFD-DLTELGT 87 (251)
T ss_dssp GGTEEECTTCCC-SSCC----SCCCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTCCE
T ss_pred CCeEEecCCCCc-cccC----CCCCCCCCEEEccCCC-cCccCHhHhcCcccCCEEECCCCcCCccCHhHhc-cCCcCCE
Confidence 456666665442 1110 0113579999999874 4444555678899999999999987765444343 6789999
Q ss_pred EecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++|+.|+++++. ++......+. .+++|+.|+
T Consensus 88 L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~ 161 (251)
T 3m19_A 88 LGLANN-QLASL-PLGVFDHLTQLDKLYLGGNQ-LKSLPS-GVFDRLTKLKELRLNTNQ-LQSIPAGAFD-KLTNLQTLS 161 (251)
T ss_dssp EECTTS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTTTTT-TCTTCCEEE
T ss_pred EECCCC-ccccc-ChhHhcccCCCCEEEcCCCc-CCCcCh-hHhccCCcccEEECcCCc-CCccCHHHcC-cCcCCCEEE
Confidence 999984 55432 12235577899999999875 543221 112468899999999854 5432222232 788999999
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++|.++......+..+++|+.|++++| .++
T Consensus 162 L~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 192 (251)
T 3m19_A 162 LSTNQLQSVPHGAFDRLGKLQTITLFGN-QFD 192 (251)
T ss_dssp CCSSCCSCCCTTTTTTCTTCCEEECCSC-CBC
T ss_pred CCCCcCCccCHHHHhCCCCCCEEEeeCC-cee
Confidence 9999988777667778999999999998 554
No 104
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.22 E-value=2.3e-12 Score=111.12 Aligned_cols=161 Identities=13% Similarity=0.136 Sum_probs=111.1
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
.+.++.|+++++...... ...+..+++|++|+++++. +....+..+..+++|+.|++++|.+.......+. .+++|
T Consensus 34 ~~~l~~L~L~~n~l~~~~--~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~-~l~~L 109 (251)
T 3m19_A 34 PADTEKLDLQSTGLATLS--DATFRGLTKLTWLNLDYNQ-LQTLSAGVFDDLTELGTLGLANNQLASLPLGVFD-HLTQL 109 (251)
T ss_dssp CTTCCEEECTTSCCCCCC--TTTTTTCTTCCEEECTTSC-CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTT-TCTTC
T ss_pred CCCCCEEEccCCCcCccC--HhHhcCcccCCEEECCCCc-CCccCHhHhccCCcCCEEECCCCcccccChhHhc-ccCCC
Confidence 357999999987632221 1224568999999999873 4445556678899999999999987754433333 67899
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
++|+++++ .++.. ....+..+++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.
T Consensus 110 ~~L~L~~N-~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 183 (251)
T 3m19_A 110 DKLYLGGN-QLKSL-PSGVFDRLTKLKELRLNTNQ-LQSIPAG-AFDKLTNLQTLSLSTNQ-LQSVPHGAF-DRLGKLQT 183 (251)
T ss_dssp CEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSC-CSCCCTTTT-TTCTTCCE
T ss_pred CEEEcCCC-cCCCc-ChhHhccCCcccEEECcCCc-CCccCHH-HcCcCcCCCEEECCCCc-CCccCHHHH-hCCCCCCE
Confidence 99999984 55432 12234567999999999875 5432221 22467999999999854 543222223 37899999
Q ss_pred eeecccccChh
Q 012001 411 LDITENEVNDE 421 (473)
Q Consensus 411 L~l~~~~~~~~ 421 (473)
|++++|.++..
T Consensus 184 L~l~~N~~~c~ 194 (251)
T 3m19_A 184 ITLFGNQFDCS 194 (251)
T ss_dssp EECCSCCBCTT
T ss_pred EEeeCCceeCC
Confidence 99999987654
No 105
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.22 E-value=4e-11 Score=107.93 Aligned_cols=82 Identities=21% Similarity=0.186 Sum_probs=48.5
Q ss_pred CCCCcEEecCCCCc-------cchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHH
Q 012001 251 CKSLKALNLSKCQN-------ISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAI 323 (473)
Q Consensus 251 ~~~L~~L~l~~~~~-------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l 323 (473)
+++|+.|.+.+... .....+..++..+|+|+.|.++++.... +.. + ..++|+.|++..+.+++..+..+
T Consensus 138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~--l~~-~-~~~~L~~L~L~~~~l~~~~l~~l 213 (362)
T 2ra8_A 138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLS--IGK-K-PRPNLKSLEIISGGLPDSVVEDI 213 (362)
T ss_dssp HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCB--CCS-C-BCTTCSEEEEECSBCCHHHHHHH
T ss_pred cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCce--ecc-c-cCCCCcEEEEecCCCChHHHHHH
Confidence 68899998865321 0011244566667778887776652211 111 1 25677777777777766666666
Q ss_pred Hh-hCCCCCeEecC
Q 012001 324 GN-WHGSLKELSLS 336 (473)
Q Consensus 324 ~~-~~~~L~~L~l~ 336 (473)
+. .+|+|++|+|.
T Consensus 214 ~~~~lp~L~~L~L~ 227 (362)
T 2ra8_A 214 LGSDLPNLEKLVLY 227 (362)
T ss_dssp HHSBCTTCCEEEEE
T ss_pred HHccCCCCcEEEEe
Confidence 53 46777777664
No 106
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.18 E-value=8e-10 Score=89.79 Aligned_cols=126 Identities=17% Similarity=0.173 Sum_probs=90.3
Q ss_pred HHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH---hCCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCCC
Q 012001 319 GIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ---SHKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCKL 392 (473)
Q Consensus 319 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~ 392 (473)
.+..+....++|++|++++|..+.+.+...+.. ..++|++|++++|. +++.+...++. ..++|+.|++++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~-i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR-SNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC-CCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC-CChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 344444467888888888854777776655543 45788888888875 88777655543 45788888888854
Q ss_pred CCHHHHHHHHh---cCccCCeeee--cccccChhhhhhhh----cCCCCCeeecCCCCCcchHH
Q 012001 393 VSWEAFVLIGQ---QCQYLEELDI--TENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEG 447 (473)
Q Consensus 393 ~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~ 447 (473)
+++.+...++. ..+.|++|++ ++|.+++.+...++ ..++|++|++++| .+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n-~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS-SHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCC-CCChHH
Confidence 78877666654 4567888888 77888888766655 3578888888888 777655
No 107
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.18 E-value=1.7e-12 Score=114.16 Aligned_cols=199 Identities=15% Similarity=0.105 Sum_probs=145.3
Q ss_pred CCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSL 330 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L 330 (473)
+++++++++.++. ++... ..-.++++.|+++++. +....+..+..+++|+.|+++++.+...... ..+++|
T Consensus 9 l~~l~~l~~~~~~-l~~ip----~~~~~~l~~L~L~~N~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~l~~L 79 (290)
T 1p9a_G 9 VASHLEVNCDKRN-LTALP----PDLPKDTTILHLSENL-LYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVL 79 (290)
T ss_dssp STTCCEEECTTSC-CSSCC----SCCCTTCCEEECTTSC-CSEEEGGGGTTCTTCCEEECTTSCCCEEECC---SCCTTC
T ss_pred cCCccEEECCCCC-CCcCC----CCCCCCCCEEEcCCCc-CCccCHHHhhcCCCCCEEECCCCccCcccCC---CCCCcC
Confidence 6889999998765 22211 0113689999999884 4545567788999999999999987753322 378999
Q ss_pred CeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCe
Q 012001 331 KELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEE 410 (473)
Q Consensus 331 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 410 (473)
+.|++++ +.++. ++..+..+++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.
T Consensus 80 ~~L~Ls~-N~l~~--l~~~~~~l~~L~~L~l~~N~-l~~l~~~-~~~~l~~L~~L~L~~N~-l~~~~~~~~-~~l~~L~~ 152 (290)
T 1p9a_G 80 GTLDLSH-NQLQS--LPLLGQTLPALTVLDVSFNR-LTSLPLG-ALRGLGELQELYLKGNE-LKTLPPGLL-TPTPKLEK 152 (290)
T ss_dssp CEEECCS-SCCSS--CCCCTTTCTTCCEEECCSSC-CCCCCSS-TTTTCTTCCEEECTTSC-CCCCCTTTT-TTCTTCCE
T ss_pred CEEECCC-CcCCc--CchhhccCCCCCEEECCCCc-CcccCHH-HHcCCCCCCEEECCCCC-CCccChhhc-ccccCCCE
Confidence 9999998 45542 33445678999999999875 4432211 22468999999999964 543222222 37899999
Q ss_pred eeecccccChhhhhhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 411 LDITENEVNDEGLKSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 411 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
|++++|.++......+..+++|+.|++++| .++. ++......++|+.+++++++-
T Consensus 153 L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N-~l~~--ip~~~~~~~~L~~l~L~~Np~ 207 (290)
T 1p9a_G 153 LSLANNNLTELPAGLLNGLENLDTLLLQEN-SLYT--IPKGFFGSHLLPFAFLHGNPW 207 (290)
T ss_dssp EECTTSCCSCCCTTTTTTCTTCCEEECCSS-CCCC--CCTTTTTTCCCSEEECCSCCB
T ss_pred EECCCCcCCccCHHHhcCcCCCCEEECCCC-cCCc--cChhhcccccCCeEEeCCCCc
Confidence 999999999776666778999999999999 8873 444444678999999998763
No 108
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=99.17 E-value=1.6e-10 Score=103.96 Aligned_cols=73 Identities=18% Similarity=0.197 Sum_probs=36.0
Q ss_pred CCCCCEEEccCCCCCCHHHHHHHHh--cCccCCeeeecccccChhhhhhhh----cCCCCCeeecCCCCCcchHHHHHHH
Q 012001 379 CTSLTSLRMECCKLVSWEAFVLIGQ--QCQYLEELDITENEVNDEGLKSIS----RCSKLSSLKLGICSNITDEGLKHVG 452 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~l~----~~~~L~~L~l~~~~~l~~~~~~~~~ 452 (473)
+|+|+.|.+.+|. +++.+...++. .+|+|++|+++.|.+++.+...+. .+++|+.|++++| .+++.++..+.
T Consensus 251 ~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n-~i~d~~~~~l~ 328 (362)
T 2ra8_A 251 FPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYN-YLSDEMKKELQ 328 (362)
T ss_dssp CTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSB-BCCHHHHHHHH
T ss_pred CCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCC-cCCHHHHHHHH
Confidence 4555555555543 33333333331 345555555555555555444332 2455555555555 55555555544
Q ss_pred h
Q 012001 453 S 453 (473)
Q Consensus 453 ~ 453 (473)
+
T Consensus 329 ~ 329 (362)
T 2ra8_A 329 K 329 (362)
T ss_dssp H
T ss_pred H
Confidence 3
No 109
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.13 E-value=2.1e-11 Score=95.80 Aligned_cols=85 Identities=24% Similarity=0.368 Sum_probs=45.8
Q ss_pred cCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCCCCcchHHH--HHHHhc
Q 012001 378 TCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNITDEGL--KHVGST 454 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l~~~~~--~~~~~~ 454 (473)
.+++|+.|++++|. ++.. +......+++|+.|++++|.+++.. +..+..+++|+.|++++| .++.... ......
T Consensus 62 ~l~~L~~L~Ls~n~-i~~~-~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~ 138 (149)
T 2je0_A 62 KLNKLKKLELSDNR-VSGG-LEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKL 138 (149)
T ss_dssp CCTTCCEEECCSSC-CCSC-THHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHH
T ss_pred cCCCCCEEECCCCc-ccch-HHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHH
Confidence 34555555555533 3221 2223324666666666666666532 345556677777777776 5554322 123446
Q ss_pred CccCCeeecCC
Q 012001 455 CSMLKELDLYR 465 (473)
Q Consensus 455 ~~~L~~L~l~~ 465 (473)
+++|++|++++
T Consensus 139 l~~L~~L~l~d 149 (149)
T 2je0_A 139 LPQLTYLDGYD 149 (149)
T ss_dssp CTTCCEETTBC
T ss_pred CCCcccccCCC
Confidence 67777776653
No 110
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.11 E-value=1.3e-11 Score=99.09 Aligned_cols=111 Identities=19% Similarity=0.195 Sum_probs=68.6
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~ 430 (473)
.+++|+.|++++|. ++.. .....+++|+.|++++|. ++.. +......+++|+.|++++|.+++.. +..+..++
T Consensus 47 ~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~ 120 (168)
T 2ell_A 47 EFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLE 120 (168)
T ss_dssp GGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCS
T ss_pred hCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCccCcchhHHHHhcCC
Confidence 34555555555543 3322 112346677777777654 3322 2233335788888888888777743 35667788
Q ss_pred CCCeeecCCCCCcchHHH--HHHHhcCccCCeeecCCCCCc
Q 012001 431 KLSSLKLGICSNITDEGL--KHVGSTCSMLKELDLYRFVTF 469 (473)
Q Consensus 431 ~L~~L~l~~~~~l~~~~~--~~~~~~~~~L~~L~l~~c~~l 469 (473)
+|+.|++++| .++.... ......+++|++|++++|..-
T Consensus 121 ~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 121 CLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDREDQ 160 (168)
T ss_dssp CCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred CCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence 8888888888 6664322 135557888888888887653
No 111
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.10 E-value=5.4e-12 Score=113.47 Aligned_cols=292 Identities=13% Similarity=0.061 Sum_probs=168.3
Q ss_pred CCCCcEEEcCCCCcccHHHHHHHHc-CCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhh--
Q 012001 124 CRFLTEIDLSNGTEMGDAAAAAIAE-AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALK-- 200 (473)
Q Consensus 124 ~~~L~~L~l~~~~~~~~~~~~~l~~-~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~-- 200 (473)
.+++++|.+++. +.......+.. +++|+.|+|+++. +...... ...++.++.+..... .+.... ...
T Consensus 24 ~~~l~~L~l~g~--i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~--~~~~~~~~~~~~~~~-~I~~~a----F~~~~ 93 (329)
T 3sb4_A 24 ANSITHLTLTGK--LNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGK--AGTYPNGKFYIYMAN-FVPAYA----FSNVV 93 (329)
T ss_dssp HHHCSEEEEEEE--ECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEES--SSSSGGGCCEEECTT-EECTTT----TEEEE
T ss_pred hCceeEEEEecc--ccHHHHHHHHHhhccCeEEecCcce-eEEecCc--ccccccccccccccc-ccCHHH----hcccc
Confidence 457899999875 55555566766 8999999998865 2200000 000222222222221 122211 125
Q ss_pred ------CCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCcc-chHHH-HH
Q 012001 201 ------CQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNI-SHVGL-SS 272 (473)
Q Consensus 201 ------~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~-~~~~~-~~ 272 (473)
|++|+.+.+.. .+....-.++..+++|+.+.+..+. +......++.. +.++..+........ ....+ ..
T Consensus 94 ~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~-i~~i~~~aF~~-~~~l~~l~~~~~~~~~~~~~i~~~ 170 (329)
T 3sb4_A 94 NGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKT-APNLLPEALAD-SVTAIFIPLGSSDAYRFKNRWEHF 170 (329)
T ss_dssp TTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSS-CCEECTTSSCT-TTCEEEECTTCTHHHHTSTTTTTS
T ss_pred cccccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCC-ccccchhhhcC-CCceEEecCcchhhhhcccccccc
Confidence 78888888887 5655555567778888888887632 22222222333 555665554431100 00000 00
Q ss_pred HHhcCcccc-eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHH
Q 012001 273 LIKGADYLQ-QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQ 351 (473)
Q Consensus 273 ~~~~~~~L~-~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 351 (473)
.+..+..|+ .+.+.....+.......-....+++.+.+.+. +.......+...+++|+.|++.++ .++..+ ...+.
T Consensus 171 ~f~~~~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~-l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~ 247 (329)
T 3sb4_A 171 AFIEGEPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGK-LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFA 247 (329)
T ss_dssp CEEESCCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEEC-CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTT
T ss_pred ccccccccceeEEecCCCcHHHHHhhcccCccccceEEEeee-ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-Hhhhh
Confidence 012344555 44444333332222222224557777777764 455566666656899999999873 343221 22366
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCC-EEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLT-SLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS 430 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~ 430 (473)
.|++|+++++.++ ++..+-.++ ..|++|+ .+.+.. .++.-+-..+. +|++|+.+++.++.++..+..++..|+
T Consensus 248 ~~~~L~~l~l~~n--i~~I~~~aF-~~~~~L~~~l~l~~--~l~~I~~~aF~-~c~~L~~l~l~~n~i~~I~~~aF~~~~ 321 (329)
T 3sb4_A 248 QKKYLLKIKLPHN--LKTIGQRVF-SNCGRLAGTLELPA--SVTAIEFGAFM-GCDNLRYVLATGDKITTLGDELFGNGV 321 (329)
T ss_dssp TCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEEEECT--TCCEECTTTTT-TCTTEEEEEECSSCCCEECTTTTCTTC
T ss_pred CCCCCCEEECCcc--cceehHHHh-hCChhccEEEEEcc--cceEEchhhhh-CCccCCEEEeCCCccCccchhhhcCCc
Confidence 8899999999764 433222222 4689999 999975 34332222333 899999999999999888888899999
Q ss_pred CCCeeec
Q 012001 431 KLSSLKL 437 (473)
Q Consensus 431 ~L~~L~l 437 (473)
+|+.|..
T Consensus 322 ~L~~ly~ 328 (329)
T 3sb4_A 322 PSKLIYK 328 (329)
T ss_dssp CCCEEEC
T ss_pred chhhhcc
Confidence 9999864
No 112
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=99.09 E-value=2.6e-09 Score=86.74 Aligned_cols=126 Identities=16% Similarity=0.196 Sum_probs=84.9
Q ss_pred hHHHhhhCCCCCCeeEecCC-cCChhHHHHHHh---hCCCCCeEecCCCCCCChHHHHHH---HHhCCCCcEEecCCCCC
Q 012001 294 DLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGN---WHGSLKELSLSKCSGVTDEELSFV---VQSHKELRKLDITCCRK 366 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~---~~~~L~~L~l~~~~~~~~~~~~~~---~~~~~~L~~L~l~~~~~ 366 (473)
.+...+...++|+.|++++| .+++.+...++. ..++|++|++++ +.+.+.+...+ +...++|++|++++|.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~-n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~- 104 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESNF- 104 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTT-SCCCHHHHHHHHHHHHHCSSCCEEECCSSC-
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcC-CCCChHHHHHHHHHHHhCCCcCEEECcCCc-
Confidence 44556667778888888887 777777666653 356788888887 46776664443 3445778888887765
Q ss_pred CCHHHHHHHHh---cCCCCCEEEc--cCCCCCCHHHHHHHHh---cCccCCeeeecccccChhh
Q 012001 367 ITYASINSITK---TCTSLTSLRM--ECCKLVSWEAFVLIGQ---QCQYLEELDITENEVNDEG 422 (473)
Q Consensus 367 ~~~~~~~~~~~---~~~~L~~L~l--~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~~ 422 (473)
+++.+...++. ..++|+.|++ ++ +.+++.+...+.. ..+.|++|++++|.+++.+
T Consensus 105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~~~~ 167 (185)
T 1io0_A 105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQQGPRL 167 (185)
T ss_dssp CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSSHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCCCChHH
Confidence 77777666654 3467888888 44 4477766544432 4577888888887777665
No 113
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.09 E-value=2.8e-11 Score=104.71 Aligned_cols=149 Identities=19% Similarity=0.213 Sum_probs=98.6
Q ss_pred hcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCC
Q 012001 275 KGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHK 354 (473)
Q Consensus 275 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 354 (473)
..+++|+.|+++++. +.. +. .+..+++|+.|++++|.+.+... +. .+++|+.|+++++ .+++ ++.. .. +
T Consensus 38 ~~l~~L~~L~l~~n~-i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~-~l~~L~~L~L~~N-~l~~--l~~~-~~-~ 106 (263)
T 1xeu_A 38 KELSGVQNFNGDNSN-IQS-LA-GMQFFTNLKELHLSHNQISDLSP--LK-DLTKLEELSVNRN-RLKN--LNGI-PS-A 106 (263)
T ss_dssp HHHTTCSEEECTTSC-CCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GT-TCSSCCEEECCSS-CCSC--CTTC-CC-S
T ss_pred hhcCcCcEEECcCCC-ccc-ch-HHhhCCCCCEEECCCCccCCChh--hc-cCCCCCEEECCCC-ccCC--cCcc-cc-C
Confidence 346788888888774 322 22 56778888888888888765443 33 7788888888874 4443 1111 12 7
Q ss_pred CCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCe
Q 012001 355 ELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSS 434 (473)
Q Consensus 355 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 434 (473)
+|+.|++++|. +++. .. ...+++|+.|+++++. +++. ..+. .+++|+.|++++|.+++. ..+..+++|+.
T Consensus 107 ~L~~L~L~~N~-l~~~--~~-l~~l~~L~~L~Ls~N~-i~~~--~~l~-~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~ 176 (263)
T 1xeu_A 107 CLSRLFLDNNE-LRDT--DS-LIHLKNLEILSIRNNK-LKSI--VMLG-FLSKLEVLDLHGNEITNT--GGLTRLKKVNW 176 (263)
T ss_dssp SCCEEECCSSC-CSBS--GG-GTTCTTCCEEECTTSC-CCBC--GGGG-GCTTCCEEECTTSCCCBC--TTSTTCCCCCE
T ss_pred cccEEEccCCc-cCCC--hh-hcCcccccEEECCCCc-CCCC--hHHc-cCCCCCEEECCCCcCcch--HHhccCCCCCE
Confidence 78888888765 4432 22 3467888888888754 5443 2232 678888888888877765 45667788888
Q ss_pred eecCCCCCcch
Q 012001 435 LKLGICSNITD 445 (473)
Q Consensus 435 L~l~~~~~l~~ 445 (473)
|++++| .++.
T Consensus 177 L~l~~N-~~~~ 186 (263)
T 1xeu_A 177 IDLTGQ-KCVN 186 (263)
T ss_dssp EEEEEE-EEEC
T ss_pred EeCCCC-cccC
Confidence 888887 5553
No 114
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.06 E-value=1.7e-11 Score=98.54 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=50.2
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHH-HHHHHHhcCccCCeeeecccccChhhh---hhhh
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGL---KSIS 427 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~---~~l~ 427 (473)
.+++|++|++++|. ++.. +......+++|+.|++++|. +++. .+..+. .+++|+.|++++|.+++... ..+.
T Consensus 69 ~l~~L~~L~Ls~N~-l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~ 144 (168)
T 2ell_A 69 KLPKLKKLELSENR-IFGG-LDMLAEKLPNLTHLNLSGNK-LKDISTLEPLK-KLECLKSLDLFNCEVTNLNDYRESVFK 144 (168)
T ss_dssp CCSSCCEEEEESCC-CCSC-CCHHHHHCTTCCEEECBSSS-CCSSGGGGGGS-SCSCCCEEECCSSGGGTSTTHHHHHHT
T ss_pred cCCCCCEEECcCCc-CchH-HHHHHhhCCCCCEEeccCCc-cCcchhHHHHh-cCCCCCEEEeeCCcCcchHHHHHHHHH
Confidence 44556666665554 3221 22333346666666666653 4332 222232 67788888888887776654 3566
Q ss_pred cCCCCCeeecCCC
Q 012001 428 RCSKLSSLKLGIC 440 (473)
Q Consensus 428 ~~~~L~~L~l~~~ 440 (473)
.+++|+.|++++|
T Consensus 145 ~l~~L~~L~l~~n 157 (168)
T 2ell_A 145 LLPQLTYLDGYDR 157 (168)
T ss_dssp TCSSCCEETTEET
T ss_pred hCccCcEecCCCC
Confidence 7888888888877
No 115
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.06 E-value=6.8e-13 Score=120.42 Aligned_cols=36 Identities=8% Similarity=0.007 Sum_probs=24.2
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCH 237 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 237 (473)
+++++|++++|.++......+.++++|++|+++++.
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 65 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQND 65 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCT
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCC
Confidence 467888888877764333456677777777777643
No 116
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.04 E-value=5.9e-12 Score=120.97 Aligned_cols=156 Identities=13% Similarity=0.190 Sum_probs=106.1
Q ss_pred hHHHhhhCCCCCCeeE-ecCCcCC--------hhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC
Q 012001 294 DLSKCLHNFPMLQSIK-FEDCPVA--------RSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC 364 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~-l~~~~~~--------~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~ 364 (473)
..+..+..+++|+.|+ +..+.+. ...+..+ ....|+.|+++++ .++. ++. +..+++|+.|+++++
T Consensus 400 ~~~~~l~~l~~L~~L~~l~~n~~~~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 400 YEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKM--EYADVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp GHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH--HHTTCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSS
T ss_pred CCHHHHHHHHhcccCcchhhcccchhhhhhhhccccccc--CccCceEEEecCC-CCCC--CcC-ccccccCcEeecCcc
Confidence 3445555666666666 3333211 1122222 2347889999884 5553 344 667889999999987
Q ss_pred CCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhh-hhhhhcCCCCCeeecCCCCCc
Q 012001 365 RKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEG-LKSISRCSKLSSLKLGICSNI 443 (473)
Q Consensus 365 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~l 443 (473)
. ++ .++.....+++|+.|+++++. ++. ++.+. .+++|+.|++++|.++... +..++.+++|+.|++++| .+
T Consensus 474 ~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~l~-~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N-~l 545 (567)
T 1dce_A 474 R-LR--ALPPALAALRCLEVLQASDNA-LEN--VDGVA-NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGN-SL 545 (567)
T ss_dssp C-CC--CCCGGGGGCTTCCEEECCSSC-CCC--CGGGT-TCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTS-GG
T ss_pred c-cc--ccchhhhcCCCCCEEECCCCC-CCC--CcccC-CCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCC-cC
Confidence 5 55 233334578999999999854 554 33333 8999999999999998875 678889999999999999 77
Q ss_pred chH--HHHHHHhcCccCCeeec
Q 012001 444 TDE--GLKHVGSTCSMLKELDL 463 (473)
Q Consensus 444 ~~~--~~~~~~~~~~~L~~L~l 463 (473)
+.. ....+...+|+|+.|++
T Consensus 546 ~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 546 CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp GGSSSCTTHHHHHCTTCSEEEC
T ss_pred CCCccHHHHHHHHCcccCccCC
Confidence 643 23345557899999864
No 117
>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E
Probab=99.04 E-value=1.7e-10 Score=71.56 Aligned_cols=41 Identities=20% Similarity=0.327 Sum_probs=35.0
Q ss_pred CCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 8 NSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 8 ~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....|..||+||+.+||+ |++ .+|+.+++.|||+|++++..
T Consensus 5 ~~~~~~~LP~eil~~I~~-~L~-~~dl~~~~~Vck~w~~~~~~ 45 (53)
T 1fs1_A 5 PGVSWDSLPDELLLGIFS-CLC-LPELLKVSGVCKRWYRLASD 45 (53)
T ss_dssp ----CCSSCHHHHHHHHT-TSC-GGGHHHHHTTCHHHHHHHTC
T ss_pred CCCCHHHCCHHHHHHHHH-cCC-HHHHHHHHHHHHHHHHHhCC
Confidence 345799999999999999 997 99999999999999998763
No 118
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.04 E-value=6.4e-10 Score=87.20 Aligned_cols=129 Identities=20% Similarity=0.137 Sum_probs=65.5
Q ss_pred CCCcEEeeccccCCC-CcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCccc
Q 012001 202 QEIRTLDLSYLPITE-KCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYL 280 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~-~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 280 (473)
++++.|+++++.+++ .....+..+++|+.|+++++ .+... ..+.. +++|+.|+++++..... +...+..+++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~--~~~~~-l~~L~~L~Ls~n~i~~~--~~~~~~~l~~L 90 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINV-GLTSI--ANLPK-LNKLKKLELSDNRVSGG--LEVLAEKCPNL 90 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTS-CCCCC--TTCCC-CTTCCEEECCSSCCCSC--THHHHHHCTTC
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCC-CCCCc--hhhhc-CCCCCEEECCCCcccch--HHHHhhhCCCC
Confidence 456666666665542 22233345666666666664 23322 22222 56666666665553221 22334445666
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHH--HHHHhhCCCCCeEecC
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGI--KAIGNWHGSLKELSLS 336 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~--~~l~~~~~~L~~L~l~ 336 (473)
++|+++++.......+..+..+++|+.|++++|.+.+... ......+++|+.|+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 6666666532221233556666777777777766554322 1122255666666554
No 119
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=98.98 E-value=3.3e-10 Score=97.95 Aligned_cols=174 Identities=15% Similarity=0.114 Sum_probs=120.0
Q ss_pred CcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCC
Q 012001 225 LQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPM 304 (473)
Q Consensus 225 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~ 304 (473)
+.++..+.+..+ .+.+.. .+.. +++|+.|+++++.. .... .+..+++|+.|+++++. +....+ +..+++
T Consensus 18 l~~l~~l~l~~~-~i~~~~--~~~~-l~~L~~L~l~~n~i-~~l~---~l~~l~~L~~L~L~~N~-i~~~~~--l~~l~~ 86 (263)
T 1xeu_A 18 LANAVKQNLGKQ-SVTDLV--SQKE-LSGVQNFNGDNSNI-QSLA---GMQFFTNLKELHLSHNQ-ISDLSP--LKDLTK 86 (263)
T ss_dssp HHHHHHHHHTCS-CTTSEE--CHHH-HTTCSEEECTTSCC-CCCT---TGGGCTTCCEEECCSSC-CCCCGG--GTTCSS
T ss_pred HHHHHHHHhcCC-Cccccc--chhh-cCcCcEEECcCCCc-ccch---HHhhCCCCCEEECCCCc-cCCChh--hccCCC
Confidence 344555555552 333222 2344 78999999998863 3222 25668999999999884 333222 889999
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
|+.|++++|.+.+.. .+. . ++|+.|+++++ .+++. . .+..+++|+.|+++++. +++.. ....+++|+.
T Consensus 87 L~~L~L~~N~l~~l~--~~~-~-~~L~~L~L~~N-~l~~~--~-~l~~l~~L~~L~Ls~N~-i~~~~---~l~~l~~L~~ 154 (263)
T 1xeu_A 87 LEELSVNRNRLKNLN--GIP-S-ACLSRLFLDNN-ELRDT--D-SLIHLKNLEILSIRNNK-LKSIV---MLGFLSKLEV 154 (263)
T ss_dssp CCEEECCSSCCSCCT--TCC-C-SSCCEEECCSS-CCSBS--G-GGTTCTTCCEEECTTSC-CCBCG---GGGGCTTCCE
T ss_pred CCEEECCCCccCCcC--ccc-c-CcccEEEccCC-ccCCC--h-hhcCcccccEEECCCCc-CCCCh---HHccCCCCCE
Confidence 999999999876522 122 2 89999999984 56542 2 35678999999999876 55432 2357899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKS 425 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~ 425 (473)
|+++++. +++. ..+ ..+++|+.|++++|.++......
T Consensus 155 L~L~~N~-i~~~--~~l-~~l~~L~~L~l~~N~~~~~~~~~ 191 (263)
T 1xeu_A 155 LDLHGNE-ITNT--GGL-TRLKKVNWIDLTGQKCVNEPVKY 191 (263)
T ss_dssp EECTTSC-CCBC--TTS-TTCCCCCEEEEEEEEEECCCEEC
T ss_pred EECCCCc-Ccch--HHh-ccCCCCCEEeCCCCcccCCcccc
Confidence 9999965 5543 223 37899999999999887765443
No 120
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.96 E-value=4e-11 Score=100.09 Aligned_cols=83 Identities=13% Similarity=0.044 Sum_probs=42.0
Q ss_pred cccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 278 DYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
++|++|+++++. +.......+..+++|+.|+++++.+.......+. .+++|++|+++++ .++.. ....+..+++|+
T Consensus 28 ~~l~~L~l~~n~-l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls~n-~l~~~-~~~~~~~l~~L~ 103 (208)
T 2o6s_A 28 AQTTYLDLETNS-LKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFN-KLTSLTYLNLSTN-QLQSL-PNGVFDKLTQLK 103 (208)
T ss_dssp TTCSEEECCSSC-CCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTT-TCTTCCEEECCSS-CCCCC-CTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-cCcCChhhhcccccCcEEECCCCccCccChhhcC-CCCCcCEEECCCC-cCCcc-CHhHhcCccCCC
Confidence 467777777663 3333334456667777777777665532222222 4566666666653 33211 011123445555
Q ss_pred EEecCCC
Q 012001 358 KLDITCC 364 (473)
Q Consensus 358 ~L~l~~~ 364 (473)
+|+++++
T Consensus 104 ~L~L~~N 110 (208)
T 2o6s_A 104 ELALNTN 110 (208)
T ss_dssp EEECCSS
T ss_pred EEEcCCC
Confidence 5555544
No 121
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=98.93 E-value=7.6e-12 Score=113.52 Aligned_cols=154 Identities=12% Similarity=-0.038 Sum_probs=91.9
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.+++|++|++++|.+.......+....++..+.+.++..+.......+......++.|+++++.. +... .-.....+
T Consensus 102 ~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i-~~i~--~~~f~~~~ 178 (350)
T 4ay9_X 102 NLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGI-QEIH--NSAFNGTQ 178 (350)
T ss_dssp CCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCC-CEEC--TTSSTTEE
T ss_pred hccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccc-cCCC--hhhccccc
Confidence 66888888888887764433344455566677776655554333222333234678888887652 2211 11123467
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEE
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKL 359 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 359 (473)
|++|.+.++..+.......+..+++|+.|++++|.++.-.. ..+.+|++|.+.++..+.. ++. +..+++|+.+
T Consensus 179 L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~----~~~~~L~~L~~l~~~~l~~--lP~-l~~l~~L~~l 251 (350)
T 4ay9_X 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPS----YGLENLKKLRARSTYNLKK--LPT-LEKLVALMEA 251 (350)
T ss_dssp EEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCS----SSCTTCCEEECTTCTTCCC--CCC-TTTCCSCCEE
T ss_pred hhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccCh----hhhccchHhhhccCCCcCc--CCC-chhCcChhhC
Confidence 88888876545554444567788899999999887664221 1356777887766555432 221 3456777777
Q ss_pred ecCC
Q 012001 360 DITC 363 (473)
Q Consensus 360 ~l~~ 363 (473)
++.+
T Consensus 252 ~l~~ 255 (350)
T 4ay9_X 252 SLTY 255 (350)
T ss_dssp ECSC
T ss_pred cCCC
Confidence 7754
No 122
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.93 E-value=9.4e-11 Score=106.74 Aligned_cols=156 Identities=18% Similarity=0.124 Sum_probs=100.7
Q ss_pred cccceeeccccccCchhHHHhhh-CCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSADLSKCLH-NFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~~~~~l~-~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|+++++. +.......+. .+++|+.|++++|.+.......+. .+++|+.|++++ +.++.. ....+..+++|
T Consensus 39 ~~l~~L~Ls~N~-l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L 114 (361)
T 2xot_A 39 SYTALLDLSHNN-LSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFV-PVPNLRYLDLSS-NHLHTL-DEFLFSDLQAL 114 (361)
T ss_dssp TTCSEEECCSSC-CCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCS-SCCCEE-CTTTTTTCTTC
T ss_pred CCCCEEECCCCC-CCccChhhhhhcccccCEEECCCCcCCccChhhcc-CCCCCCEEECCC-CcCCcC-CHHHhCCCcCC
Confidence 458889998873 4444444455 788999999999887754444443 678899999988 455432 12235567888
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHH--hcCccCCeeeecccccChhhhhhhhcCCC--C
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIG--QQCQYLEELDITENEVNDEGLKSISRCSK--L 432 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~~L~~L~l~~~~~~~~~~~~l~~~~~--L 432 (473)
+.|+++++. ++...... ...+++|+.|+++++. ++......+. ..+++|+.|++++|.++......+..++. +
T Consensus 115 ~~L~L~~N~-i~~~~~~~-~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l 191 (361)
T 2xot_A 115 EVLLLYNNH-IVVVDRNA-FEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVK 191 (361)
T ss_dssp CEEECCSSC-CCEECTTT-TTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHH
T ss_pred CEEECCCCc-ccEECHHH-hCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhc
Confidence 888888765 44321111 2457888888888754 4432111110 25788888888888887766666666766 4
Q ss_pred CeeecCCC
Q 012001 433 SSLKLGIC 440 (473)
Q Consensus 433 ~~L~l~~~ 440 (473)
+.|++.+|
T Consensus 192 ~~l~l~~N 199 (361)
T 2xot_A 192 NGLYLHNN 199 (361)
T ss_dssp TTEECCSS
T ss_pred ceEEecCC
Confidence 77888887
No 123
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.91 E-value=1e-10 Score=98.25 Aligned_cols=135 Identities=13% Similarity=0.133 Sum_probs=91.6
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
+.++.|+++++.+...........+++|+.|++++ +.++... ...+..+++|++|+++++. ++..... ....+++|
T Consensus 32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~-N~i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSN-NKITDIE-EGAFEGASGVNEILLTSNR-LENVQHK-MFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCS-SCCCEEC-TTTTTTCTTCCEEECCSSC-CCCCCGG-GGTTCSSC
T ss_pred CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCC-CcCCEEC-HHHhCCCCCCCEEECCCCc-cCccCHh-HhcCCcCC
Confidence 46789999999876543222223678999999988 4555321 2235577889999998775 4432222 22467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 108 ~~L~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 166 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGNDSFI-GLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN-PFN 166 (220)
T ss_dssp CEEECTTSC-CCCBCTTSST-TCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSC-CEE
T ss_pred CEEECCCCc-CCeECHhHcC-CCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCc-CCc
Confidence 999998854 4432222222 6788999999988888876677778888999999888 443
No 124
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.90 E-value=7.2e-11 Score=97.57 Aligned_cols=104 Identities=20% Similarity=0.217 Sum_probs=57.3
Q ss_pred HhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhh-hhhhcC
Q 012001 351 QSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL-KSISRC 429 (473)
Q Consensus 351 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~~ 429 (473)
..+++|+.|++++|. ++. +......+++|+.|++++|. ++. +..+. .+++|+.|++++|.+++... ..+..+
T Consensus 67 ~~l~~L~~L~l~~n~-l~~--l~~~~~~~~~L~~L~L~~N~-l~~--l~~~~-~l~~L~~L~l~~N~i~~~~~~~~l~~l 139 (198)
T 1ds9_A 67 SGMENLRILSLGRNL-IKK--IENLDAVADTLEELWISYNQ-IAS--LSGIE-KLVNLRVLYMSNNKITNWGEIDKLAAL 139 (198)
T ss_dssp HHHTTCCEEEEEEEE-ECS--CSSHHHHHHHCSEEEEEEEE-CCC--HHHHH-HHHHSSEEEESEEECCCHHHHHHHTTT
T ss_pred ccCCCCCEEECCCCC-ccc--ccchhhcCCcCCEEECcCCc-CCc--CCccc-cCCCCCEEECCCCcCCchhHHHHHhcC
Confidence 344555555555543 221 11222334666777776643 433 22333 56777777777777766432 456667
Q ss_pred CCCCeeecCCCCCcchHH---------HHHHHhcCccCCeee
Q 012001 430 SKLSSLKLGICSNITDEG---------LKHVGSTCSMLKELD 462 (473)
Q Consensus 430 ~~L~~L~l~~~~~l~~~~---------~~~~~~~~~~L~~L~ 462 (473)
++|+.|++++| .++... .......+++|++|+
T Consensus 140 ~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 140 DKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred CCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 77777777777 554321 112344677777776
No 125
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.87 E-value=1.9e-10 Score=96.67 Aligned_cols=131 Identities=16% Similarity=0.149 Sum_probs=91.9
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++++.|+++++.+.......+. .+++|+.|++++ +.++.. .+..+..+++|++|+++++. ++.... .....+++|
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~-~l~~L~~L~Ls~-N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L 106 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFS-PYKKLRRIDLSN-NQISEL-APDAFQGLRSLNSLVLYGNK-ITELPK-SLFEGLFSL 106 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSST-TCTTCCEEECCS-SCCCEE-CTTTTTTCSSCCEEECCSSC-CCCCCT-TTTTTCTTC
T ss_pred cCCCEEECCCCcCCCcCHhHhh-CCCCCCEEECCC-CcCCCc-CHHHhhCCcCCCEEECCCCc-CCccCH-hHccCCCCC
Confidence 5899999999987754433333 678999999998 455432 12345677899999998875 442221 122467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+.|+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++|
T Consensus 107 ~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 162 (220)
T 2v9t_B 107 QLLLLNANK-INCLRVDAFQ-DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162 (220)
T ss_dssp CEEECCSSC-CCCCCTTTTT-TCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEECCCCC-CCEeCHHHcC-CCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCC
Confidence 999998854 5433222233 7788999999998888877666778889999999888
No 126
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.86 E-value=6.8e-09 Score=99.28 Aligned_cols=37 Identities=11% Similarity=0.035 Sum_probs=20.9
Q ss_pred CCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH
Q 012001 408 LEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 408 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (473)
|+.|++++|.++... ..+..+++|+.|++++| .++..
T Consensus 209 L~~L~Ls~N~l~~lp-~~l~~l~~L~~L~L~~N-~l~~~ 245 (571)
T 3cvr_A 209 EIFFRCRENRITHIP-ENILSLDPTCTIILEDN-PLSSR 245 (571)
T ss_dssp CEEEECCSSCCCCCC-GGGGGSCTTEEEECCSS-SCCHH
T ss_pred ceEEecCCCcceecC-HHHhcCCCCCEEEeeCC-cCCCc
Confidence 466666666665432 33444666666666666 55543
No 127
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.86 E-value=1.7e-10 Score=110.84 Aligned_cols=179 Identities=17% Similarity=0.125 Sum_probs=105.5
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccC-----------HHHHHHHHhcCCcCceee-cccCCCCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLIT-----------DLGIGRIAACCRKLKLLC-LKWCIRVT 190 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~-----------~~~~~~~~~~~~~L~~L~-l~~~~~~~ 190 (473)
.+++|+.|+++++ .++..+ ..++.+++|++|+++++..+. ..........+++|+.|+ +..+ .+.
T Consensus 347 ~~~~L~~L~Ls~n-~L~~Lp-~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n-~~~ 423 (567)
T 1dce_A 347 TDEQLFRCELSVE-KSTVLQ-SELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA-YLD 423 (567)
T ss_dssp TTTTSSSCCCCHH-HHHHHH-HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH-HHH
T ss_pred cCccceeccCChh-hHHhhH-HHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhc-ccc
Confidence 5778888888876 455443 678888888888886542100 001112222366777776 3321 111
Q ss_pred HH--------HHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCC
Q 012001 191 DL--------GVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKC 262 (473)
Q Consensus 191 ~~--------~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~ 262 (473)
+. .+..+ ....|+.|++++|.++. ++.+..+++|+.|+++++ .+... +..+.. +++|+.|+++++
T Consensus 424 ~L~~l~l~~n~i~~l--~~~~L~~L~Ls~n~l~~--lp~~~~l~~L~~L~Ls~N-~l~~l-p~~~~~-l~~L~~L~Ls~N 496 (567)
T 1dce_A 424 DLRSKFLLENSVLKM--EYADVRVLHLAHKDLTV--LCHLEQLLLVTHLDLSHN-RLRAL-PPALAA-LRCLEVLQASDN 496 (567)
T ss_dssp HHHHHHHHHHHHHHH--HHTTCSEEECTTSCCSS--CCCGGGGTTCCEEECCSS-CCCCC-CGGGGG-CTTCCEEECCSS
T ss_pred hhhhhhhhccccccc--CccCceEEEecCCCCCC--CcCccccccCcEeecCcc-ccccc-chhhhc-CCCCCEEECCCC
Confidence 11 12222 12468899999988764 345778888888888884 34422 123444 778888888876
Q ss_pred CccchHHHHHHHhcCcccceeeccccccCchhH-HHhhhCCCCCCeeEecCCcCC
Q 012001 263 QNISHVGLSSLIKGADYLQQLILAYSFWVSADL-SKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 263 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~L~~L~l~~~~~~ 316 (473)
.... . + .+..+++|+.|+++++. +.... +..+..+++|+.|++++|.+.
T Consensus 497 ~l~~-l--p-~l~~l~~L~~L~Ls~N~-l~~~~~p~~l~~l~~L~~L~L~~N~l~ 546 (567)
T 1dce_A 497 ALEN-V--D-GVANLPRLQELLLCNNR-LQQSAAIQPLVSCPRLVLLNLQGNSLC 546 (567)
T ss_dssp CCCC-C--G-GGTTCSSCCEEECCSSC-CCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred CCCC-C--c-ccCCCCCCcEEECCCCC-CCCCCCcHHHhcCCCCCEEEecCCcCC
Confidence 5322 1 1 24556777777777663 33222 556666777777777776654
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.85 E-value=6.8e-10 Score=89.74 Aligned_cols=135 Identities=13% Similarity=0.117 Sum_probs=79.8
Q ss_pred hhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhc
Q 012001 299 LHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKT 378 (473)
Q Consensus 299 l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 378 (473)
+.++++|+.|++++|.+..- ..+....++|+.|+++++ .+++. ..+..+++|+.|+++++. ++... ..+...
T Consensus 15 ~~~~~~L~~L~l~~n~l~~i--~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~ 86 (176)
T 1a9n_A 15 YTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQA 86 (176)
T ss_dssp EECTTSCEEEECTTSCCCSC--CCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHH
T ss_pred cCCcCCceEEEeeCCCCchh--HHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc-ccccC-cchhhc
Confidence 34577889999998887642 233333458888888873 55532 234456777777777764 44221 112245
Q ss_pred CCCCCEEEccCCCCCCHHH-HHHHHhcCccCCeeeecccccChhhhh---hhhcCCCCCeeecCCCCCcc
Q 012001 379 CTSLTSLRMECCKLVSWEA-FVLIGQQCQYLEELDITENEVNDEGLK---SISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 379 ~~~L~~L~l~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~~~~~~~~---~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++|+.|+++++. +++.. +..+. .+++|+.|++++|.+++.... .+..+++|+.|++++| ...
T Consensus 87 l~~L~~L~L~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n-~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNS-LVELGDLDPLA-SLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV-KLK 153 (176)
T ss_dssp CTTCCEEECCSCC-CCCGGGGGGGG-GCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC-CHH
T ss_pred CCCCCEEECCCCc-CCcchhhHhhh-cCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC-CHH
Confidence 6777777777754 43311 22232 667777777777766544322 2556777777777776 444
No 129
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=98.84 E-value=4e-10 Score=93.95 Aligned_cols=132 Identities=13% Similarity=0.064 Sum_probs=93.0
Q ss_pred CCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCC
Q 012001 302 FPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTS 381 (473)
Q Consensus 302 ~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 381 (473)
.++|+.|+++++.+.......+. .+++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++
T Consensus 27 ~~~l~~L~l~~n~l~~~~~~~~~-~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~~-~~~~~l~~ 101 (208)
T 2o6s_A 27 PAQTTYLDLETNSLKSLPNGVFD-ELTSLTQLYLGGN-KLQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLPN-GVFDKLTQ 101 (208)
T ss_dssp CTTCSEEECCSSCCCCCCTTTTT-TCTTCSEEECCSS-CCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTT
T ss_pred CCCCcEEEcCCCccCcCChhhhc-ccccCcEEECCCC-ccCcc-ChhhcCCCCCcCEEECCCCc-CCccCH-hHhcCccC
Confidence 46899999999987754333333 6789999999984 55432 12234567899999999875 442221 12246889
Q ss_pred CCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 382 LTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 382 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
|+.|+++++. ++......+ ..+++|+.|++++|.+++.....+..+++|+.|++++|
T Consensus 102 L~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 158 (208)
T 2o6s_A 102 LKELALNTNQ-LQSLPDGVF-DKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDN 158 (208)
T ss_dssp CCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSC
T ss_pred CCEEEcCCCc-CcccCHhHh-ccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCC
Confidence 9999998854 543221112 37889999999999888776656778999999999998
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=98.84 E-value=3.3e-10 Score=103.16 Aligned_cols=161 Identities=14% Similarity=0.090 Sum_probs=109.6
Q ss_pred CCCCcEEecCCCCccchHHHHHHHh-cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCC
Q 012001 251 CKSLKALNLSKCQNISHVGLSSLIK-GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGS 329 (473)
Q Consensus 251 ~~~L~~L~l~~~~~~~~~~~~~~~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~ 329 (473)
.+.++.|+++++. ++.... ..+. .+++|+.|+++++. +.......+..+++|+.|++++|.+.......+. .+++
T Consensus 38 ~~~l~~L~Ls~N~-l~~l~~-~~~~~~l~~L~~L~L~~N~-i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~-~l~~ 113 (361)
T 2xot_A 38 PSYTALLDLSHNN-LSRLRA-EWTPTRLTNLHSLLLSHNH-LNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFS-DLQA 113 (361)
T ss_dssp CTTCSEEECCSSC-CCEECT-TSSSSCCTTCCEEECCSSC-CCEECTTTTTTCTTCCEEECCSSCCCEECTTTTT-TCTT
T ss_pred CCCCCEEECCCCC-CCccCh-hhhhhcccccCEEECCCCc-CCccChhhccCCCCCCEEECCCCcCCcCCHHHhC-CCcC
Confidence 3568999999876 332211 1123 68999999999873 4444456688999999999999987754333333 7899
Q ss_pred CCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHH--HhcCCCCCEEEccCCCCCCHHHHHHHHhcCcc
Q 012001 330 LKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSI--TKTCTSLTSLRMECCKLVSWEAFVLIGQQCQY 407 (473)
Q Consensus 330 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 407 (473)
|+.|++++ +.++.. ....+..+++|+.|+++++. ++......+ ...+++|+.|+++++. ++......+. .++.
T Consensus 114 L~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~-~l~~ 188 (361)
T 2xot_A 114 LEVLLLYN-NHIVVV-DRNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSNK-LKKLPLTDLQ-KLPA 188 (361)
T ss_dssp CCEEECCS-SCCCEE-CTTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSSC-CCCCCHHHHH-HSCH
T ss_pred CCEEECCC-CcccEE-CHHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCCC-CCccCHHHhh-hccH
Confidence 99999998 455532 12335678999999999875 543222111 1358999999999854 6654444444 5666
Q ss_pred --CCeeeecccccCh
Q 012001 408 --LEELDITENEVND 420 (473)
Q Consensus 408 --L~~L~l~~~~~~~ 420 (473)
++.|++.+|.+..
T Consensus 189 ~~l~~l~l~~N~~~C 203 (361)
T 2xot_A 189 WVKNGLYLHNNPLEC 203 (361)
T ss_dssp HHHTTEECCSSCEEC
T ss_pred hhcceEEecCCCccC
Confidence 5899999986653
No 131
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=98.83 E-value=7.3e-10 Score=105.95 Aligned_cols=177 Identities=15% Similarity=0.102 Sum_probs=114.0
Q ss_pred CCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCC
Q 012001 252 KSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLK 331 (473)
Q Consensus 252 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~ 331 (473)
.+|+.|+++++.. +.. +. .-.++|+.|+++++. +. .++ ..+++|+.|++++|.++.- +. +. .+|+
T Consensus 59 ~~L~~L~Ls~n~L-~~l--p~--~l~~~L~~L~Ls~N~-l~-~ip---~~l~~L~~L~Ls~N~l~~i-p~-l~---~~L~ 123 (571)
T 3cvr_A 59 NQFSELQLNRLNL-SSL--PD--NLPPQITVLEITQNA-LI-SLP---ELPASLEYLDACDNRLSTL-PE-LP---ASLK 123 (571)
T ss_dssp TTCSEEECCSSCC-SCC--CS--CCCTTCSEEECCSSC-CS-CCC---CCCTTCCEEECCSSCCSCC-CC-CC---TTCC
T ss_pred CCccEEEeCCCCC-Ccc--CH--hHcCCCCEEECcCCC-Cc-ccc---cccCCCCEEEccCCCCCCc-ch-hh---cCCC
Confidence 4677777776542 211 10 013567777777763 22 222 4467888888888876651 11 22 2888
Q ss_pred eEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCee
Q 012001 332 ELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEEL 411 (473)
Q Consensus 332 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 411 (473)
.|++++ +.++. ++. .+++|+.|+++++. ++.. . ..+++|+.|++++|. ++. ++.+ . ++|+.|
T Consensus 124 ~L~Ls~-N~l~~--lp~---~l~~L~~L~Ls~N~-l~~l--p---~~l~~L~~L~Ls~N~-L~~--lp~l--~-~~L~~L 185 (571)
T 3cvr_A 124 HLDVDN-NQLTM--LPE---LPALLEYINADNNQ-LTML--P---ELPTSLEVLSVRNNQ-LTF--LPEL--P-ESLEAL 185 (571)
T ss_dssp EEECCS-SCCSC--CCC---CCTTCCEEECCSSC-CSCC--C---CCCTTCCEEECCSSC-CSC--CCCC--C-TTCCEE
T ss_pred EEECCC-CcCCC--CCC---cCccccEEeCCCCc-cCcC--C---CcCCCcCEEECCCCC-CCC--cchh--h-CCCCEE
Confidence 888887 34543 222 56789999998775 4431 1 146899999999865 443 2222 2 899999
Q ss_pred eecccccChhhhhhhhcCCCC-------CeeecCCCCCcchHHHHHHHhcCccCCeeecCCCCC
Q 012001 412 DITENEVNDEGLKSISRCSKL-------SSLKLGICSNITDEGLKHVGSTCSMLKELDLYRFVT 468 (473)
Q Consensus 412 ~l~~~~~~~~~~~~l~~~~~L-------~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~c~~ 468 (473)
++++|.++.... +.. +| +.|++++| .++. ++.....+++|+.|++++|+-
T Consensus 186 ~Ls~N~L~~lp~--~~~--~L~~~~~~L~~L~Ls~N-~l~~--lp~~l~~l~~L~~L~L~~N~l 242 (571)
T 3cvr_A 186 DVSTNLLESLPA--VPV--RNHHSEETEIFFRCREN-RITH--IPENILSLDPTCTIILEDNPL 242 (571)
T ss_dssp ECCSSCCSSCCC--CC----------CCEEEECCSS-CCCC--CCGGGGGSCTTEEEECCSSSC
T ss_pred ECcCCCCCchhh--HHH--hhhcccccceEEecCCC-ccee--cCHHHhcCCCCCEEEeeCCcC
Confidence 999998885432 332 66 99999999 8884 555444699999999999863
No 132
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=98.83 E-value=8.8e-10 Score=89.06 Aligned_cols=135 Identities=15% Similarity=0.064 Sum_probs=59.6
Q ss_pred CcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 277 ADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 277 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+++|+.|+++++. +. .++......++|+.|++++|.+.+. ..+. .+++|+.|++++ +.++.. ...++..+++|
T Consensus 18 ~~~L~~L~l~~n~-l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~-~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L 90 (176)
T 1a9n_A 18 AVRDRELDLRGYK-IP-VIENLGATLDQFDAIDFSDNEIRKL--DGFP-LLRRLKTLLVNN-NRICRI-GEGLDQALPDL 90 (176)
T ss_dssp TTSCEEEECTTSC-CC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCC-CCSSCCEEECCS-SCCCEE-CSCHHHHCTTC
T ss_pred cCCceEEEeeCCC-Cc-hhHHhhhcCCCCCEEECCCCCCCcc--cccc-cCCCCCEEECCC-Cccccc-CcchhhcCCCC
Confidence 4456666665552 22 1111112223666666666655432 1222 455666666665 233321 01223455666
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHH--HHHHHhcCccCCeeeecccccCh
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEA--FVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
++|+++++. +++.........+++|+.|+++++. ++... .......+++|+.|++++|...+
T Consensus 91 ~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~~ 154 (176)
T 1a9n_A 91 TELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVKLKE 154 (176)
T ss_dssp CEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred CEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence 666666554 3322110112345666666666543 22110 01122255666666666554443
No 133
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.81 E-value=9e-10 Score=93.15 Aligned_cols=84 Identities=20% Similarity=0.158 Sum_probs=47.6
Q ss_pred hCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCC
Q 012001 352 SHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSK 431 (473)
Q Consensus 352 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~ 431 (473)
.+++|+.|+++++. ++.... .....+++|+.|+++++. ++. +......+++|+.|++++|.++......+..+++
T Consensus 86 ~l~~L~~L~Ls~N~-l~~l~~-~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~ 160 (229)
T 3e6j_A 86 SLTQLTVLDLGTNQ-LTVLPS-AVFDRLVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSS 160 (229)
T ss_dssp TCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCcCEEECCCCc-CCccCh-hHhCcchhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCCcCCccCHHHHhCCCC
Confidence 34555555555443 321111 111245666666666633 331 1111136778888888888777665555667788
Q ss_pred CCeeecCCC
Q 012001 432 LSSLKLGIC 440 (473)
Q Consensus 432 L~~L~l~~~ 440 (473)
|+.|++++|
T Consensus 161 L~~L~l~~N 169 (229)
T 3e6j_A 161 LTHAYLFGN 169 (229)
T ss_dssp CCEEECTTS
T ss_pred CCEEEeeCC
Confidence 888888887
No 134
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=98.80 E-value=4.8e-10 Score=94.15 Aligned_cols=135 Identities=17% Similarity=0.166 Sum_probs=87.3
Q ss_pred cccceeeccccccCchh-HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCC
Q 012001 278 DYLQQLILAYSFWVSAD-LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKEL 356 (473)
Q Consensus 278 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 356 (473)
+.++.|+++++. +... ....+..+++|+.|++++|.+.......+. .+++|++|+++++ .++.. ....+..+++|
T Consensus 32 ~~~~~L~L~~N~-l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~-~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~~L 107 (220)
T 2v70_A 32 QYTAELRLNNNE-FTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFE-GASGVNEILLTSN-RLENV-QHKMFKGLESL 107 (220)
T ss_dssp TTCSEEECCSSC-CCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTT-TCTTCCEEECCSS-CCCCC-CGGGGTTCSSC
T ss_pred CCCCEEEcCCCc-CCccCchhhhccCCCCCEEECCCCcCCEECHHHhC-CCCCCCEEECCCC-ccCcc-CHhHhcCCcCC
Confidence 457888888774 3322 223467888999999998887654443443 6788999999883 44432 12235677889
Q ss_pred cEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 357 RKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 357 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
++|+++++. ++...... ...+++|+.|+++++. ++......+. .+++|+.|++++|.+..
T Consensus 108 ~~L~Ls~N~-l~~~~~~~-~~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 108 KTLMLRSNR-ITCVGNDS-FIGLSSVRLLSLYDNQ-ITTVAPGAFD-TLHSLSTLNLLANPFNC 167 (220)
T ss_dssp CEEECTTSC-CCCBCTTS-STTCTTCSEEECTTSC-CCCBCTTTTT-TCTTCCEEECCSCCEEC
T ss_pred CEEECCCCc-CCeECHhH-cCCCccCCEEECCCCc-CCEECHHHhc-CCCCCCEEEecCcCCcC
Confidence 999998775 44221111 2357889999998854 4432222222 67889999998886653
No 135
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=98.75 E-value=3.6e-09 Score=88.80 Aligned_cols=34 Identities=15% Similarity=0.074 Sum_probs=17.0
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
++++.|+++++.+.......+..+++|+.|++++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~ 65 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSN 65 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCS
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCC
Confidence 3455555555554433333444455555555555
No 136
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=98.74 E-value=7.5e-10 Score=91.41 Aligned_cols=127 Identities=16% Similarity=0.180 Sum_probs=69.9
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+++|+.|++++|.+..-. .+. .+++|+.|+++++ .++. ++..+..+++|+.|++++|. ++.. .. ..
T Consensus 43 ~~~~l~~L~~L~ls~n~l~~l~--~~~-~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~~ 112 (198)
T 1ds9_A 43 TLSTLKACKHLALSTNNIEKIS--SLS-GMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ-IASL--SG-IE 112 (198)
T ss_dssp HHHHTTTCSEEECSEEEESCCC--CHH-HHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE-CCCH--HH-HH
T ss_pred HHhcCCCCCEEECCCCCCcccc--ccc-cCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc-CCcC--Cc-cc
Confidence 4555566666666665544321 222 4566666666653 2321 22334444667777777654 4432 22 23
Q ss_pred cCCCCCEEEccCCCCCCHH-HHHHHHhcCccCCeeeecccccChhhhh----------hhhcCCCCCeee
Q 012001 378 TCTSLTSLRMECCKLVSWE-AFVLIGQQCQYLEELDITENEVNDEGLK----------SISRCSKLSSLK 436 (473)
Q Consensus 378 ~~~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~~~~~~----------~l~~~~~L~~L~ 436 (473)
.+++|+.|+++++. ++.. .+..+. .+++|+.|++++|.+++.... .+..+++|+.|+
T Consensus 113 ~l~~L~~L~l~~N~-i~~~~~~~~l~-~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld 180 (198)
T 1ds9_A 113 KLVNLRVLYMSNNK-ITNWGEIDKLA-ALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp HHHHSSEEEESEEE-CCCHHHHHHHT-TTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC
T ss_pred cCCCCCEEECCCCc-CCchhHHHHHh-cCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC
Confidence 46677777777744 4432 223333 677777777777766554321 245678888776
No 137
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=98.69 E-value=7.9e-09 Score=87.30 Aligned_cols=60 Identities=20% Similarity=0.115 Sum_probs=29.7
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ 263 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~ 263 (473)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++.
T Consensus 40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~~~~~~-l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSN-QLGALPVGVFDS-LTQLTVLDLGTNQ 99 (229)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSC
T ss_pred CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCC-CCCCcChhhccc-CCCcCEEECCCCc
Confidence 55666666666655444444555666666666653 232221111222 4555555555443
No 138
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.68 E-value=5.7e-10 Score=102.91 Aligned_cols=232 Identities=13% Similarity=0.125 Sum_probs=111.8
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADY 279 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 279 (473)
.|++|+.+.+... +....-..+..+++|+.+.+... +....-.++.. ++.|+.+.+......... ......+
T Consensus 160 ~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~--~~~I~~~~F~~-~~~L~~i~~~~~~~~i~~----~~~~~~~ 231 (394)
T 4fs7_A 160 TCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN--LKIIRDYCFAE-CILLENMEFPNSLYYLGD----FALSKTG 231 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEECT----TTTTTCC
T ss_pred ccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC--ceEeCchhhcc-ccccceeecCCCceEeeh----hhcccCC
Confidence 5667777776543 11122233445666666666431 22111112222 566666655433211110 1122355
Q ss_pred cceeeccccccCchhHHHhhhCCCCCCeeEecCCcC--ChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCc
Q 012001 280 LQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPV--ARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELR 357 (473)
Q Consensus 280 L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 357 (473)
|+.+.+... ........+..+..++.+.+..+.. .... ...+..++.+.... ..+.+. .+..+.+|+
T Consensus 232 l~~i~ip~~--~~~i~~~~f~~~~~l~~~~~~~~~~~i~~~~----F~~~~~l~~~~~~~-~~i~~~----~F~~~~~L~ 300 (394)
T 4fs7_A 232 VKNIIIPDS--FTELGKSVFYGCTDLESISIQNNKLRIGGSL----FYNCSGLKKVIYGS-VIVPEK----TFYGCSSLT 300 (394)
T ss_dssp CCEEEECTT--CCEECSSTTTTCSSCCEEEECCTTCEECSCT----TTTCTTCCEEEECS-SEECTT----TTTTCTTCC
T ss_pred CceEEECCC--ceecccccccccccceeEEcCCCcceeeccc----cccccccceeccCc-eeeccc----ccccccccc
Confidence 666655432 1111123345566677776655421 1111 11455666665544 222221 244567777
Q ss_pred EEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeec
Q 012001 358 KLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKL 437 (473)
Q Consensus 358 ~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 437 (473)
.+.+... ++..+-.++ ..|.+|+.+++.. .++.-+-.++. +|.+|+.+.+..+ ++..+..++..|++|+.+.+
T Consensus 301 ~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~--~v~~I~~~aF~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~l 373 (394)
T 4fs7_A 301 EVKLLDS--VKFIGEEAF-ESCTSLVSIDLPY--LVEEIGKRSFR-GCTSLSNINFPLS-LRKIGANAFQGCINLKKVEL 373 (394)
T ss_dssp EEEECTT--CCEECTTTT-TTCTTCCEECCCT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEE
T ss_pred ccccccc--cceechhhh-cCCCCCCEEEeCC--cccEEhHHhcc-CCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEE
Confidence 7777532 221111111 3577788887743 12222222222 7888888888665 55555566777888888888
Q ss_pred CCCCCcchHHHHHHHhcCccCCee
Q 012001 438 GICSNITDEGLKHVGSTCSMLKEL 461 (473)
Q Consensus 438 ~~~~~l~~~~~~~~~~~~~~L~~L 461 (473)
..+ ++..+ .-...|++|+.+
T Consensus 374 p~~--~~~~~--~~F~~c~~L~~I 393 (394)
T 4fs7_A 374 PKR--LEQYR--YDFEDTTKFKWI 393 (394)
T ss_dssp EGG--GGGGG--GGBCTTCEEEEE
T ss_pred CCC--CEEhh--heecCCCCCcEE
Confidence 653 33211 122356666554
No 139
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.55 E-value=2.2e-06 Score=68.74 Aligned_cols=121 Identities=16% Similarity=0.244 Sum_probs=77.7
Q ss_pred hHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHh---CCCCcEEecCCCCCCCHHHHHHHHh---cCCCCCEEEccCCC
Q 012001 318 SGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQS---HKELRKLDITCCRKITYASINSITK---TCTSLTSLRMECCK 391 (473)
Q Consensus 318 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~ 391 (473)
+.+..+...-+.|++|++++++.+.+.+...+... ...|+.|++++|. +++.+..+++. .-+.|+.|+|+. +
T Consensus 31 ~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~~N~tL~~L~L~~-N 108 (197)
T 1pgv_A 31 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIETSPSLRVLNVES-N 108 (197)
T ss_dssp HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHHHCSSCCEEECCS-S
T ss_pred HHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHhcCCccCeEecCC-C
Confidence 34444544567788888876446777765555443 3678888887765 77776655543 346788888877 4
Q ss_pred CCCHHHHHHHHhcC---ccCCeeeeccc---ccChhhhhhhh----cCCCCCeeecCCC
Q 012001 392 LVSWEAFVLIGQQC---QYLEELDITEN---EVNDEGLKSIS----RCSKLSSLKLGIC 440 (473)
Q Consensus 392 ~~~~~~~~~~~~~~---~~L~~L~l~~~---~~~~~~~~~l~----~~~~L~~L~l~~~ 440 (473)
.+++.+...+++.+ +.|++|+++++ .+++.+...++ .-+.|++|+++.+
T Consensus 109 ~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~ 167 (197)
T 1pgv_A 109 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA 167 (197)
T ss_dssp BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred cCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence 47777777666533 45777777653 56666544443 3567777777766
No 140
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.55 E-value=1.8e-08 Score=82.53 Aligned_cols=107 Identities=21% Similarity=0.182 Sum_probs=76.3
Q ss_pred CCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCc
Q 012001 327 HGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQ 406 (473)
Q Consensus 327 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 406 (473)
.++|++|++++ +.++. ++..+..+++|+.|+++++. ++......+ ..+++|+.|+++++. ++......+. .++
T Consensus 30 ~~~l~~L~L~~-n~i~~--ip~~~~~l~~L~~L~Ls~N~-i~~i~~~~f-~~l~~L~~L~Ls~N~-l~~i~~~~f~-~l~ 102 (193)
T 2wfh_A 30 PRDVTELYLDG-NQFTL--VPKELSNYKHLTLIDLSNNR-ISTLSNQSF-SNMTQLLTLILSYNR-LRCIPPRTFD-GLK 102 (193)
T ss_dssp CTTCCEEECCS-SCCCS--CCGGGGGCTTCCEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSC-CCBCCTTTTT-TCT
T ss_pred CCCCCEEECCC-CcCch--hHHHhhcccCCCEEECCCCc-CCEeCHhHc-cCCCCCCEEECCCCc-cCEeCHHHhC-CCC
Confidence 36899999998 45553 33456778999999998875 443222222 467899999998854 5433222233 788
Q ss_pred cCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|++++|.++......+..+++|+.|++++|
T Consensus 103 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 103 SLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp TCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 9999999999888766666778889999999988
No 141
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.50 E-value=8.3e-09 Score=84.53 Aligned_cols=129 Identities=14% Similarity=0.088 Sum_probs=86.8
Q ss_pred CeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 012001 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (473)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (473)
+.++++++.+..- +.. ..++|++|++++ +.++.......+..+++|++|+++++. ++..... ....+++|+.|
T Consensus 11 ~~l~~s~~~l~~i-p~~---~~~~l~~L~l~~-n~i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~-~~~~l~~L~~L 83 (192)
T 1w8a_A 11 TTVDCTGRGLKEI-PRD---IPLHTTELLLND-NELGRISSDGLFGRLPHLVKLELKRNQ-LTGIEPN-AFEGASHIQEL 83 (192)
T ss_dssp TEEECTTSCCSSC-CSC---CCTTCSEEECCS-CCCCSBCCSCSGGGCTTCCEEECCSSC-CCCBCTT-TTTTCTTCCEE
T ss_pred CEEEcCCCCcCcC-ccC---CCCCCCEEECCC-CcCCccCCccccccCCCCCEEECCCCC-CCCcCHh-HcCCcccCCEE
Confidence 5666666654321 111 234899999998 455432111235678999999999875 4432212 22468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
+++++. ++......+. .+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 84 ~Ls~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~ 139 (192)
T 1w8a_A 84 QLGENK-IKEISNKMFL-GLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN-PFN 139 (192)
T ss_dssp ECCSCC-CCEECSSSST-TCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC-CBC
T ss_pred ECCCCc-CCccCHHHhc-CCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC-Ccc
Confidence 999854 5543222222 7899999999999998877777888999999999999 554
No 142
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=98.47 E-value=5.8e-09 Score=85.46 Aligned_cols=131 Identities=12% Similarity=0.072 Sum_probs=85.4
Q ss_pred ceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEe
Q 012001 281 QQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLD 360 (473)
Q Consensus 281 ~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 360 (473)
+.++++++. +. .++..+ .++++.|+++++.+...........+++|++|++++ +.++.. .+..+..+++|++|+
T Consensus 11 ~~l~~s~~~-l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~ 84 (192)
T 1w8a_A 11 TTVDCTGRG-LK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKR-NQLTGI-EPNAFEGASHIQELQ 84 (192)
T ss_dssp TEEECTTSC-CS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCS-SCCCCB-CTTTTTTCTTCCEEE
T ss_pred CEEEcCCCC-cC-cCccCC--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCC-CCCCCc-CHhHcCCcccCCEEE
Confidence 567776652 21 222222 238999999999876544332223789999999998 455532 133456789999999
Q ss_pred cCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 361 ITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 361 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
++++. ++......+ ..+++|+.|+++++. ++......+. .+++|+.|++++|.++..
T Consensus 85 Ls~N~-l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~~~~-~l~~L~~L~L~~N~l~c~ 141 (192)
T 1w8a_A 85 LGENK-IKEISNKMF-LGLHQLKTLNLYDNQ-ISCVMPGSFE-HLNSLTSLNLASNPFNCN 141 (192)
T ss_dssp CCSCC-CCEECSSSS-TTCTTCCEEECCSSC-CCEECTTSST-TCTTCCEEECTTCCBCCS
T ss_pred CCCCc-CCccCHHHh-cCCCCCCEEECCCCc-CCeeCHHHhh-cCCCCCEEEeCCCCccCc
Confidence 99875 543322112 457999999999854 5533222222 789999999999977643
No 143
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=98.44 E-value=2.9e-06 Score=68.06 Aligned_cols=125 Identities=11% Similarity=0.212 Sum_probs=78.8
Q ss_pred hHHHhhhCCCCCCeeEecCC-cCChhHHHHHHhh---CCCCCeEecCCCCCCChHHHHH---HHHhCCCCcEEecCCCCC
Q 012001 294 DLSKCLHNFPMLQSIKFEDC-PVARSGIKAIGNW---HGSLKELSLSKCSGVTDEELSF---VVQSHKELRKLDITCCRK 366 (473)
Q Consensus 294 ~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~l~~~---~~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~ 366 (473)
.+...+.+-+.|+.|+++++ .+.+.+...++.. -..|+.|+|++ +.+.+.+... .++..+.|++|+++++.
T Consensus 32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~- 109 (197)
T 1pgv_A 32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNF- 109 (197)
T ss_dssp HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence 34445556677888888775 7777776666642 35678888877 4666665333 34445778888887765
Q ss_pred CCHHHHHHHHhcC---CCCCEEEccCCC--CCCHHHHHHHH---hcCccCCeeeecccccCh
Q 012001 367 ITYASINSITKTC---TSLTSLRMECCK--LVSWEAFVLIG---QQCQYLEELDITENEVND 420 (473)
Q Consensus 367 ~~~~~~~~~~~~~---~~L~~L~l~~~~--~~~~~~~~~~~---~~~~~L~~L~l~~~~~~~ 420 (473)
+++.+...++..+ ..|+.|+++++. .+.+.+...++ ..-+.|+.|+++.+.+..
T Consensus 110 Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g~ 171 (197)
T 1pgv_A 110 LTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASMEA 171 (197)
T ss_dssp CCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHHH
T ss_pred CCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCccH
Confidence 7777777666543 568888887542 45655433332 345677777777665443
No 144
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.43 E-value=4.1e-08 Score=79.31 Aligned_cols=129 Identities=16% Similarity=0.089 Sum_probs=84.8
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
.+.+++.++.+..... ...++|++|+++++ .++.. ....+..+++|++|+++++. ++.... .....+++|+.
T Consensus 9 ~~~l~~~~~~l~~~p~----~~~~~l~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~-~~~~~l~~L~~ 80 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPT----GIPSSATRLELESN-KLQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLPD-GVFDKLTKLTI 80 (177)
T ss_dssp TTEEECCSSCCSSCCT----TCCTTCSEEECCSS-CCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEEecCCCCccCCC----CCCCCCcEEEeCCC-cccEe-CHHHhcCcccccEEECCCCc-ceEeCh-hHccCCCccCE
Confidence 3455565555433211 13478999999984 45421 12234567899999999875 543221 11246889999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+.|++++| .++
T Consensus 81 L~l~~N~-l~~~~~~~~-~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N-~~~ 137 (177)
T 2o6r_A 81 LYLHENK-LQSLPNGVF-DKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN-PWD 137 (177)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS-CBC
T ss_pred EECCCCC-ccccCHHHh-hCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC-Cee
Confidence 9999854 543222222 27889999999999888766555677899999999999 554
No 145
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=98.38 E-value=8.5e-08 Score=78.41 Aligned_cols=109 Identities=14% Similarity=0.094 Sum_probs=70.8
Q ss_pred CCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCC
Q 012001 303 PMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSL 382 (473)
Q Consensus 303 ~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 382 (473)
++|+.|+++++.+..-. ..+. .+++|+.|++++ +.++.. ....+..+++|++|+++++. ++......+ ..+++|
T Consensus 31 ~~l~~L~L~~n~i~~ip-~~~~-~l~~L~~L~Ls~-N~i~~i-~~~~f~~l~~L~~L~Ls~N~-l~~i~~~~f-~~l~~L 104 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVP-KELS-NYKHLTLIDLSN-NRISTL-SNQSFSNMTQLLTLILSYNR-LRCIPPRTF-DGLKSL 104 (193)
T ss_dssp TTCCEEECCSSCCCSCC-GGGG-GCTTCCEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCBCCTTTT-TTCTTC
T ss_pred CCCCEEECCCCcCchhH-HHhh-cccCCCEEECCC-CcCCEe-CHhHccCCCCCCEEECCCCc-cCEeCHHHh-CCCCCC
Confidence 57899999988876322 2333 678899999988 455432 12235577889999998875 443322222 467889
Q ss_pred CEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccC
Q 012001 383 TSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVN 419 (473)
Q Consensus 383 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~ 419 (473)
+.|+++++. ++......+ ..+++|+.|++++|.+.
T Consensus 105 ~~L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 105 RLLSLHGND-ISVVPEGAF-NDLSALSHLAIGANPLY 139 (193)
T ss_dssp CEEECCSSC-CCBCCTTTT-TTCTTCCEEECCSSCEE
T ss_pred CEEECCCCC-CCeeChhhh-hcCccccEEEeCCCCee
Confidence 999998854 543222122 26788999999888654
No 146
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.37 E-value=9.2e-09 Score=94.37 Aligned_cols=78 Identities=8% Similarity=0.052 Sum_probs=34.3
Q ss_pred CCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCccc
Q 012001 149 AKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYL 228 (473)
Q Consensus 149 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 228 (473)
+..++.+.+.. .++..+-.++.. + +|+.+.+... +...+-..+. . .+|+.+.+.. .+......++..+++|
T Consensus 112 ~~~l~~i~ip~--~i~~I~~~aF~~-~-~L~~i~l~~~--i~~I~~~aF~-~-~~L~~i~lp~-~l~~I~~~aF~~c~~L 182 (401)
T 4fdw_A 112 LKGYNEIILPN--SVKSIPKDAFRN-S-QIAKVVLNEG--LKSIGDMAFF-N-STVQEIVFPS-TLEQLKEDIFYYCYNL 182 (401)
T ss_dssp CSSCSEEECCT--TCCEECTTTTTT-C-CCSEEECCTT--CCEECTTTTT-T-CCCCEEECCT-TCCEECSSTTTTCTTC
T ss_pred cCCccEEEECC--ccCEehHhhccc-C-CccEEEeCCC--ccEECHHhcC-C-CCceEEEeCC-CccEehHHHhhCcccC
Confidence 35566666654 223322223332 3 5666666532 2222222221 2 2466666654 2322233344455666
Q ss_pred CeeeccC
Q 012001 229 EDLVLEG 235 (473)
Q Consensus 229 ~~L~l~~ 235 (473)
+.+.+..
T Consensus 183 ~~l~l~~ 189 (401)
T 4fdw_A 183 KKADLSK 189 (401)
T ss_dssp CEEECTT
T ss_pred CeeecCC
Confidence 6666554
No 147
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.32 E-value=1.1e-08 Score=94.39 Aligned_cols=303 Identities=18% Similarity=0.247 Sum_probs=162.9
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.|.+|+++.+... +......++..|.+|+.+++... +...+-.++. .|++|+.+.+... +...+...+ ..+.
T Consensus 69 ~c~~L~~i~lp~~--i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~-~c~~L~~i~~p~~--l~~i~~~aF-~~~~ 140 (394)
T 4fs7_A 69 GCRKVTEIKIPST--VREIGEFAFENCSKLEIINIPDS--VKMIGRCTFS-GCYALKSILLPLM--LKSIGVEAF-KGCD 140 (394)
T ss_dssp TCTTEEEEECCTT--CCEECTTTTTTCTTCCEECCCTT--CCEECTTTTT-TCTTCCCCCCCTT--CCEECTTTT-TTCC
T ss_pred CCCCceEEEeCCC--ccCcchhHhhCCCCCcEEEeCCC--ceEccchhhc-ccccchhhcccCc--eeeecceee-eccc
Confidence 6788888888642 44433356777888888888642 2322222222 2677777666431 211111111 1333
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC-ccchHHHHHHHhcCcccc
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ-NISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 281 (473)
. ....+.. ......-.++.++++|+.+.+... +....-..+.. +++|+.+.+...- .+.+. .+..+..|+
T Consensus 141 ~-~~~~~~~-~~~~i~~~aF~~c~~L~~i~l~~~--~~~I~~~~F~~-c~~L~~i~l~~~~~~I~~~----~F~~~~~L~ 211 (394)
T 4fs7_A 141 F-KEITIPE-GVTVIGDEAFATCESLEYVSLPDS--METLHNGLFSG-CGKLKSIKLPRNLKIIRDY----CFAECILLE 211 (394)
T ss_dssp C-SEEECCT-TCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTT-CTTCCBCCCCTTCCEECTT----TTTTCTTCC
T ss_pred c-cccccCc-cccccchhhhcccCCCcEEecCCc--cceeccccccC-CCCceEEEcCCCceEeCch----hhccccccc
Confidence 2 2222221 111122345667788888887642 22111122333 7788888776432 11111 244567777
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCc--CChhHHHHHHhhCCCCCeEecCCCC-CCChHHHHHHHHhCCCCcE
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCS-GVTDEELSFVVQSHKELRK 358 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~ 358 (473)
.+.+....... ......+.+|+.+.+.... +.... ...+.+++.+.+.... .+.. ..+..++.++.
T Consensus 212 ~i~~~~~~~~i---~~~~~~~~~l~~i~ip~~~~~i~~~~----f~~~~~l~~~~~~~~~~~i~~----~~F~~~~~l~~ 280 (394)
T 4fs7_A 212 NMEFPNSLYYL---GDFALSKTGVKNIIIPDSFTELGKSV----FYGCTDLESISIQNNKLRIGG----SLFYNCSGLKK 280 (394)
T ss_dssp BCCCCTTCCEE---CTTTTTTCCCCEEEECTTCCEECSST----TTTCSSCCEEEECCTTCEECS----CTTTTCTTCCE
T ss_pred eeecCCCceEe---ehhhcccCCCceEEECCCceeccccc----ccccccceeEEcCCCcceeec----cccccccccce
Confidence 77665432111 1122345677777776532 11111 1256778888776521 1111 12446677887
Q ss_pred EecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecC
Q 012001 359 LDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLG 438 (473)
Q Consensus 359 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 438 (473)
+...... +.+. ....+.+|+.+.+.. .++.-+-.++. +|.+|+.+++.++ ++..+-.++..|.+|+.+.+.
T Consensus 281 ~~~~~~~-i~~~----~F~~~~~L~~i~l~~--~i~~I~~~aF~-~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp 351 (394)
T 4fs7_A 281 VIYGSVI-VPEK----TFYGCSSLTEVKLLD--SVKFIGEEAFE-SCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFP 351 (394)
T ss_dssp EEECSSE-ECTT----TTTTCTTCCEEEECT--TCCEECTTTTT-TCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCC
T ss_pred eccCcee-eccc----ccccccccccccccc--ccceechhhhc-CCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEEC
Confidence 7765432 2221 124688999998854 13222222222 8999999999754 666666778889999999997
Q ss_pred CCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 439 ICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 439 ~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.+ ++..+-.++. +|++|+.+++..
T Consensus 352 ~~--l~~I~~~aF~-~C~~L~~i~lp~ 375 (394)
T 4fs7_A 352 LS--LRKIGANAFQ-GCINLKKVELPK 375 (394)
T ss_dssp TT--CCEECTTTBT-TCTTCCEEEEEG
T ss_pred cc--ccEehHHHhh-CCCCCCEEEECC
Confidence 64 5543333444 899999998754
No 148
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=98.31 E-value=1.6e-08 Score=92.77 Aligned_cols=268 Identities=13% Similarity=0.159 Sum_probs=129.4
Q ss_pred cCCCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHhhCC
Q 012001 123 NCRFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVALKCQ 202 (473)
Q Consensus 123 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 202 (473)
.+..++.+.+... +......++..+ +|+.+.+... +...+-.++.. + +|+.+.+.. .+...+-.. ...|+
T Consensus 111 ~~~~l~~i~ip~~--i~~I~~~aF~~~-~L~~i~l~~~--i~~I~~~aF~~-~-~L~~i~lp~--~l~~I~~~a-F~~c~ 180 (401)
T 4fdw_A 111 ILKGYNEIILPNS--VKSIPKDAFRNS-QIAKVVLNEG--LKSIGDMAFFN-S-TVQEIVFPS--TLEQLKEDI-FYYCY 180 (401)
T ss_dssp ECSSCSEEECCTT--CCEECTTTTTTC-CCSEEECCTT--CCEECTTTTTT-C-CCCEEECCT--TCCEECSST-TTTCT
T ss_pred ecCCccEEEECCc--cCEehHhhcccC-CccEEEeCCC--ccEECHHhcCC-C-CceEEEeCC--CccEehHHH-hhCcc
Confidence 4566777776543 333333344444 5777777652 33333333333 3 577777754 222222111 23678
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCC-ccchHHHHHHHhcCcccc
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQ-NISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~ 281 (473)
+|+.+++..+.++......+. +.+|+.+.+.. .+......++.. |++|+.+.+...- .+.... +.. .+|+
T Consensus 181 ~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~--~l~~I~~~aF~~-~~~L~~l~l~~~l~~I~~~a----F~~-~~L~ 251 (401)
T 4fdw_A 181 NLKKADLSKTKITKLPASTFV-YAGIEEVLLPV--TLKEIGSQAFLK-TSQLKTIEIPENVSTIGQEA----FRE-SGIT 251 (401)
T ss_dssp TCCEEECTTSCCSEECTTTTT-TCCCSEEECCT--TCCEECTTTTTT-CTTCCCEECCTTCCEECTTT----TTT-CCCS
T ss_pred cCCeeecCCCcceEechhhEe-ecccCEEEeCC--chheehhhHhhC-CCCCCEEecCCCccCccccc----ccc-CCcc
Confidence 888888877655433333333 56777777754 233322233443 7777777776421 111111 111 4566
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEec
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDI 361 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l 361 (473)
.+.+... +.......+..|++|+.+.+.++..... .++. +.. ..+.+|++|+.+.+
T Consensus 252 ~i~lp~~--i~~I~~~aF~~c~~L~~l~l~~~~~~~~----------~~~~--------I~~----~aF~~c~~L~~l~l 307 (401)
T 4fdw_A 252 TVKLPNG--VTNIASRAFYYCPELAEVTTYGSTFNDD----------PEAM--------IHP----YCLEGCPKLARFEI 307 (401)
T ss_dssp EEEEETT--CCEECTTTTTTCTTCCEEEEESSCCCCC----------TTCE--------ECT----TTTTTCTTCCEECC
T ss_pred EEEeCCC--ccEEChhHhhCCCCCCEEEeCCccccCC----------cccE--------ECH----HHhhCCccCCeEEe
Confidence 6666332 2222234455666666666655433200 0000 111 11345566666665
Q ss_pred CCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecCCC
Q 012001 362 TCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGIC 440 (473)
Q Consensus 362 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~ 440 (473)
... ++..+..++ ..|++|+.+.+.. .++.-+-..+. +| +|+.+.+.+|.........+..++ +++.|.+..+
T Consensus 308 ~~~--i~~I~~~aF-~~c~~L~~l~lp~--~l~~I~~~aF~-~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~ 380 (401)
T 4fdw_A 308 PES--IRILGQGLL-GGNRKVTQLTIPA--NVTQINFSAFN-NT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAE 380 (401)
T ss_dssp CTT--CCEECTTTT-TTCCSCCEEEECT--TCCEECTTSSS-SS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGG
T ss_pred CCc--eEEEhhhhh-cCCCCccEEEECc--cccEEcHHhCC-CC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHH
Confidence 421 221111111 3456666666633 12221112222 66 778888777655444334444553 6777777655
No 149
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.30 E-value=8.2e-08 Score=95.36 Aligned_cols=110 Identities=15% Similarity=0.088 Sum_probs=75.7
Q ss_pred hCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcC
Q 012001 326 WHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQC 405 (473)
Q Consensus 326 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~ 405 (473)
.+++|+.|+++++ .+.. ++.-+..+++|++|+++++. ++ .+......+++|+.|+|+++. ++. +......+
T Consensus 222 ~l~~L~~L~Ls~n-~l~~--l~~~~~~l~~L~~L~Ls~N~-l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l 292 (727)
T 4b8c_D 222 DDQLWHALDLSNL-QIFN--ISANIFKYDFLTRLYLNGNS-LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAELGSC 292 (727)
T ss_dssp CCCCCCEEECTTS-CCSC--CCGGGGGCCSCSCCBCTTSC-CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSGGGG
T ss_pred cCCCCcEEECCCC-CCCC--CChhhcCCCCCCEEEeeCCc-Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhhcCC
Confidence 6788999999884 3432 22223367889999998875 54 222223568899999998855 542 22222378
Q ss_pred ccCCeeeecccccChhhhhhhhcCCCCCeeecCCCCCcchH
Q 012001 406 QYLEELDITENEVNDEGLKSISRCSKLSSLKLGICSNITDE 446 (473)
Q Consensus 406 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~~~ 446 (473)
++|+.|+|++|.++.. +..+..+++|+.|+|++| .++..
T Consensus 293 ~~L~~L~L~~N~l~~l-p~~~~~l~~L~~L~L~~N-~l~~~ 331 (727)
T 4b8c_D 293 FQLKYFYFFDNMVTTL-PWEFGNLCNLQFLGVEGN-PLEKQ 331 (727)
T ss_dssp TTCSEEECCSSCCCCC-CSSTTSCTTCCCEECTTS-CCCSH
T ss_pred CCCCEEECCCCCCCcc-ChhhhcCCCccEEeCCCC-ccCCC
Confidence 8899999999888754 345778889999999998 77753
No 150
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=98.19 E-value=1.1e-06 Score=70.82 Aligned_cols=110 Identities=17% Similarity=0.092 Sum_probs=47.6
Q ss_pred CCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCccchHHHHHHHhcCcccc
Q 012001 202 QEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQNISHVGLSSLIKGADYLQ 281 (473)
Q Consensus 202 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~ 281 (473)
++|+.|+++++.+.......+..+++|++|+++++ .+.......+.. +++|+.|+++++...... ...+..+++|+
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~-l~~L~~L~l~~N~l~~~~--~~~~~~l~~L~ 103 (177)
T 2o6r_A 28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQN-QIQSLPDGVFDK-LTKLTILYLHENKLQSLP--NGVFDKLTQLK 103 (177)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSS-CCCCCCTTTTTT-CTTCCEEECCSSCCCCCC--TTTTTTCTTCC
T ss_pred CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCC-cceEeChhHccC-CCccCEEECCCCCccccC--HHHhhCCcccC
Confidence 45666666665554333333445556666666553 232211111222 455555555544311100 01122344555
Q ss_pred eeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 282 QLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 282 ~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
.|+++++. +.......+..+++|+.|++++|++.
T Consensus 104 ~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~~~ 137 (177)
T 2o6r_A 104 ELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNPWD 137 (177)
T ss_dssp EEECCSSC-CSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred EEECcCCc-ceEeCHHHhcCCcccCEEEecCCCee
Confidence 55555442 22222222344555555555555543
No 151
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=98.17 E-value=1.2e-07 Score=94.08 Aligned_cols=138 Identities=17% Similarity=0.076 Sum_probs=93.1
Q ss_pred HHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHH
Q 012001 295 LSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINS 374 (473)
Q Consensus 295 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~ 374 (473)
.+..+..+++|+.|++++|.+.. ....++ .+++|+.|+|+++ .++ .++..+..+++|+.|++++|. ++. ++.
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~~-l~~~~~-~l~~L~~L~Ls~N-~l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~ 287 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIFN-ISANIF-KYDFLTRLYLNGN-SLT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPA 287 (727)
T ss_dssp ------CCCCCCEEECTTSCCSC-CCGGGG-GCCSCSCCBCTTS-CCS--CCCGGGGGGTTCCEEECTTSC-CSS--CCS
T ss_pred ChhhhccCCCCcEEECCCCCCCC-CChhhc-CCCCCCEEEeeCC-cCc--ccChhhhCCCCCCEEeCcCCc-CCc--cCh
Confidence 35567788999999999998763 222333 7899999999984 565 245556788999999999876 552 233
Q ss_pred HHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCC-CCCeeecCCCCCcc
Q 012001 375 ITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCS-KLSSLKLGICSNIT 444 (473)
Q Consensus 375 ~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~~~~l~ 444 (473)
....+++|+.|++++|. ++. +......+++|+.|+|++|.++......+.... .+..+++++| .++
T Consensus 288 ~~~~l~~L~~L~L~~N~-l~~--lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N-~l~ 354 (727)
T 4b8c_D 288 ELGSCFQLKYFYFFDNM-VTT--LPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDN-RPE 354 (727)
T ss_dssp SGGGGTTCSEEECCSSC-CCC--CCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHC-CCC
T ss_pred hhcCCCCCCEEECCCCC-CCc--cChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccC-ccc
Confidence 33578999999999964 542 221133889999999999999987766655322 2223566666 444
No 152
>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A
Probab=98.11 E-value=1.8e-06 Score=73.76 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=37.1
Q ss_pred CCCcccCcHHHHHHHHhhhcCChhhhh-hhhhhhhhHHHHHhhh
Q 012001 9 SNPFDFLSEEIIFNILDHLNNDPFARK-SFSLTCRNFYSIESRH 51 (473)
Q Consensus 9 ~~~~~~LP~eil~~If~~~l~~~~d~~-~~~~vc~~w~~~~~~~ 51 (473)
...+..||+|++..||+ +|| .++++ ++++|||+|++++...
T Consensus 48 ~~~~~~LP~ell~~Il~-~Lp-~~~L~~r~~~VCk~Wr~l~~~~ 89 (297)
T 2e31_A 48 VEYLAELPEPLLLRVLA-ELP-ATELVQACRLVCLRWKELVDGA 89 (297)
T ss_dssp CCCTTSSCHHHHHHHHH-TSC-HHHHHHTGGGTCHHHHHHHTSH
T ss_pred ccChhhCCHHHHHHHHH-cCC-HHHHHHHHHHHhHHHHHHhcCh
Confidence 35789999999999999 998 99999 9999999999987643
No 153
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.09 E-value=9.3e-07 Score=70.55 Aligned_cols=101 Identities=15% Similarity=0.040 Sum_probs=69.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
++|+.|+++++. ++..... ....+++|+.|+++++. ++......+ ..+++|+.|++++|.++......+..+++|+
T Consensus 30 ~~l~~L~L~~N~-i~~~~~~-~~~~l~~L~~L~Ls~N~-l~~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~ 105 (170)
T 3g39_A 30 TTTQVLYLYDNQ-ITKLEPG-VFDRLTQLTRLDLDNNQ-LTVLPAGVF-DKLTQLTQLSLNDNQLKSIPRGAFDNLKSLT 105 (170)
T ss_dssp TTCSEEECCSSC-CCCCCTT-TTTTCTTCSEEECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred CCCcEEEcCCCc-CCccChh-hhcCcccCCEEECCCCC-cCccChhhc-cCCCCCCEEECCCCccCEeCHHHhcCCCCCC
Confidence 689999999875 4432221 22468999999999854 553222222 3789999999999999887766688899999
Q ss_pred eeecCCCCCcc-----hHHHHHHHhcCccCC
Q 012001 434 SLKLGICSNIT-----DEGLKHVGSTCSMLK 459 (473)
Q Consensus 434 ~L~l~~~~~l~-----~~~~~~~~~~~~~L~ 459 (473)
.|++++| .++ -..+..+.+..+.+.
T Consensus 106 ~L~L~~N-~~~c~c~~l~~l~~~l~~~~~~~ 135 (170)
T 3g39_A 106 HIWLLNN-PWDCACSDILYLSRWISQHPGLV 135 (170)
T ss_dssp EEECCSS-CBCTTBGGGHHHHHHHHHCGGGE
T ss_pred EEEeCCC-CCCCCchhHHHHHHHHHhCccee
Confidence 9999999 553 223444454444443
No 154
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=98.06 E-value=1.1e-06 Score=70.30 Aligned_cols=86 Identities=14% Similarity=0.104 Sum_probs=62.6
Q ss_pred CCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCC
Q 012001 354 KELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLS 433 (473)
Q Consensus 354 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 433 (473)
++|+.|+++++. ++.... .....+++|+.|+++++. ++..... ....+++|+.|++++|.++......+..+++|+
T Consensus 33 ~~L~~L~Ls~N~-l~~~~~-~~~~~l~~L~~L~Ls~N~-l~~i~~~-~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~ 108 (174)
T 2r9u_A 33 TDKQRLWLNNNQ-ITKLEP-GVFDHLVNLQQLYFNSNK-LTAIPTG-VFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLT 108 (174)
T ss_dssp TTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECCSSC-CCCCCTT-TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCS
T ss_pred CCCcEEEeCCCC-ccccCH-HHhcCCcCCCEEECCCCC-CCccChh-HhCCcchhhEEECCCCccceeCHHHhccccCCC
Confidence 689999999875 443211 222468999999999854 5532211 223789999999999999877655677899999
Q ss_pred eeecCCCCCcc
Q 012001 434 SLKLGICSNIT 444 (473)
Q Consensus 434 ~L~l~~~~~l~ 444 (473)
.|++++| .+.
T Consensus 109 ~L~L~~N-~~~ 118 (174)
T 2r9u_A 109 HIYLYNN-PWD 118 (174)
T ss_dssp EEECCSS-CBC
T ss_pred EEEeCCC-Ccc
Confidence 9999999 554
No 155
>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}
Probab=98.04 E-value=1.7e-06 Score=72.81 Aligned_cols=39 Identities=13% Similarity=0.125 Sum_probs=36.0
Q ss_pred CcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhhh
Q 012001 11 PFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESRH 51 (473)
Q Consensus 11 ~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~~ 51 (473)
.++.||+||+.+||+ ||+ ++|+++++.|||+|+.++...
T Consensus 4 ~l~~LP~ei~l~Ils-fL~-p~DL~~l~~vcr~Wr~la~D~ 42 (312)
T 3l2o_B 4 TLTRLPIDVQLYILS-FLS-PHDLCQLGSTNHYWNETVRDP 42 (312)
T ss_dssp HHHHSCHHHHHHHHH-TSC-HHHHHHHHTTCHHHHHHHTCH
T ss_pred hhHhCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhccc
Confidence 588999999999999 997 999999999999999987654
No 156
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.02 E-value=6.7e-07 Score=82.33 Aligned_cols=308 Identities=15% Similarity=0.168 Sum_probs=162.3
Q ss_pred cC-CCCcEEEcCCCCcccHHHHHHHHcCCCCCEEecccC--cccCHHHHHHHHhcCCcCceeecccCCCCCHHHHHHHHh
Q 012001 123 NC-RFLTEIDLSNGTEMGDAAAAAIAEAKNLERLWLARC--KLITDLGIGRIAACCRKLKLLCLKWCIRVTDLGVELVAL 199 (473)
Q Consensus 123 ~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 199 (473)
.| ..|+++.+... ++.....++..|.+|+++.+... ..+...+-.++.. |.+|+.+.+... +...+... ..
T Consensus 61 ~~~~~L~sI~iP~s--vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~-c~~L~~i~~~~~--~~~I~~~a-F~ 134 (394)
T 4gt6_A 61 NYKYVLTSVQIPDT--VTEIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMF-CSELTDIPILDS--VTEIDSEA-FH 134 (394)
T ss_dssp TCCSCCCEEEECTT--CCEECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTT-CTTCCBCGGGTT--CSEECTTT-TT
T ss_pred CCCCcCEEEEECCC--eeEEhHHHhhCCccCceEeecCCCCCeeeEechhhchh-cccceeeccCCc--cceehhhh-hh
Confidence 45 46999999753 44444467888999999988653 1233333333333 788888877542 22222111 23
Q ss_pred hCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcEEecCCCCc-cchHHHHHHHhcCc
Q 012001 200 KCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKALNLSKCQN-ISHVGLSSLIKGAD 278 (473)
Q Consensus 200 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~-~~~~~~~~~~~~~~ 278 (473)
.|.+|+.+.+... +....-..+..+..|+.+.+.. .+......++. ...|+.+.+..... +.. ..+..+.
T Consensus 135 ~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~--~~~~I~~~aF~--~~~l~~i~ip~~~~~i~~----~af~~c~ 205 (394)
T 4gt6_A 135 HCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPD--SVTAIEERAFT--GTALTQIHIPAKVTRIGT----NAFSECF 205 (394)
T ss_dssp TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCT--TCCEECTTTTT--TCCCSEEEECTTCCEECT----TTTTTCT
T ss_pred hhcccccccccce-eeeecccceecccccccccccc--eeeEecccccc--ccceeEEEECCccccccc----chhhhcc
Confidence 7888999988754 2222334455678888887764 22221111222 45788888764321 111 1134456
Q ss_pred ccceeeccccccCc--hhH----------HHhhhCCCCCCeeEecCCc--CChhHHHHHHhhCCCCCeEecCCCCCCChH
Q 012001 279 YLQQLILAYSFWVS--ADL----------SKCLHNFPMLQSIKFEDCP--VARSGIKAIGNWHGSLKELSLSKCSGVTDE 344 (473)
Q Consensus 279 ~L~~L~l~~~~~~~--~~~----------~~~l~~~~~L~~L~l~~~~--~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~ 344 (473)
.++........... ... .........+..+.+...- +.+. . ...|.+|+.+.+... +...
T Consensus 206 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~v~~i~~~---a-F~~c~~L~~i~lp~~--~~~I 279 (394)
T 4gt6_A 206 ALSTITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNGVARIETH---A-FDSCAYLASVKMPDS--VVSI 279 (394)
T ss_dssp TCCEEEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTTEEEECTT---T-TTTCSSCCEEECCTT--CCEE
T ss_pred ccceecccccccccccceeecccccccccccccccccccceEEcCCcceEcccc---e-eeecccccEEecccc--ccee
Confidence 66665543221100 000 0000112233344433210 1111 1 126778888888642 1111
Q ss_pred HHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHHHhcCccCCeeeecccccChhhh
Q 012001 345 ELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGL 423 (473)
Q Consensus 345 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~ 423 (473)
+ ...+..|+.|+.+.+... ++..+-.++ ..|.+|+.+.+.. ...+.+.. +. +|.+|+.+.+..+ ++..+-
T Consensus 280 ~-~~aF~~c~~L~~i~l~~~--i~~I~~~aF-~~c~~L~~i~lp~~v~~I~~~a---F~-~C~~L~~i~ip~s-v~~I~~ 350 (394)
T 4gt6_A 280 G-TGAFMNCPALQDIEFSSR--ITELPESVF-AGCISLKSIDIPEGITQILDDA---FA-GCEQLERIAIPSS-VTKIPE 350 (394)
T ss_dssp C-TTTTTTCTTCCEEECCTT--CCEECTTTT-TTCTTCCEEECCTTCCEECTTT---TT-TCTTCCEEEECTT-CCBCCG
T ss_pred c-CcccccccccccccCCCc--ccccCceee-cCCCCcCEEEeCCcccEehHhH---hh-CCCCCCEEEECcc-cCEEhH
Confidence 1 122456788998888532 222211122 4688999999853 22233332 22 8899999999754 666666
Q ss_pred hhhhcCCCCCeeecCCCCCcchHHHHHHHhcCccCCeeecCC
Q 012001 424 KSISRCSKLSSLKLGICSNITDEGLKHVGSTCSMLKELDLYR 465 (473)
Q Consensus 424 ~~l~~~~~L~~L~l~~~~~l~~~~~~~~~~~~~~L~~L~l~~ 465 (473)
.++..|++|+.+++.++ .. ....+ ..+.+|+.+.+..
T Consensus 351 ~aF~~C~~L~~i~~~~~-~~---~~~~~-~~~~~L~~i~i~~ 387 (394)
T 4gt6_A 351 SAFSNCTALNNIEYSGS-RS---QWNAI-STDSGLQNLPVAP 387 (394)
T ss_dssp GGGTTCTTCCEEEESSC-HH---HHHTC-BCCCCC-------
T ss_pred hHhhCCCCCCEEEECCc-ee---ehhhh-hccCCCCEEEeCC
Confidence 77888999999999876 22 12222 3677888887753
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=97.94 E-value=7e-07 Score=82.19 Aligned_cols=308 Identities=16% Similarity=0.225 Sum_probs=165.6
Q ss_pred CCccEEEcCCCccccHHHHHHHhhcCCCCcEEEcCCC--CcccHHHHHHHHcCCCCCEEecccCcccCHHHHHHHHhcCC
Q 012001 99 LTLRSINLSRSRLFTKVGLSSLTVNCRFLTEIDLSNG--TEMGDAAAAAIAEAKNLERLWLARCKLITDLGIGRIAACCR 176 (473)
Q Consensus 99 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 176 (473)
..|+++.+... ++..+-.++. .|.+|+++.+..+ ..+......++..+.+|+.+.+... +...+-..+. .|.
T Consensus 64 ~~L~sI~iP~s--vt~Ig~~AF~-~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~--~~~I~~~aF~-~c~ 137 (394)
T 4gt6_A 64 YVLTSVQIPDT--VTEIGSNAFY-NCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS--VTEIDSEAFH-HCE 137 (394)
T ss_dssp SCCCEEEECTT--CCEECTTTTT-TCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT--CSEECTTTTT-TCT
T ss_pred CcCEEEEECCC--eeEEhHHHhh-CCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc--cceehhhhhh-hhc
Confidence 45899998643 3332323333 8999999998643 1244433456778899998887652 3332222333 389
Q ss_pred cCceeecccCCCCCHHHHHHHHhhCCCCcEEeeccccCCCCcccccccCcccCeeeccCCCCCChHHHHHHHhcCCCCcE
Q 012001 177 KLKLLCLKWCIRVTDLGVELVALKCQEIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEGCHGIDDDGLASVEYSCKSLKA 256 (473)
Q Consensus 177 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~ 256 (473)
+|+.+.+... +...+-. ....|..|+.+.+... +....-.++ ...+|+.+.+.. .+......++.. +..++.
T Consensus 138 ~L~~i~lp~~--~~~I~~~-~F~~c~~L~~i~~~~~-~~~I~~~aF-~~~~l~~i~ip~--~~~~i~~~af~~-c~~l~~ 209 (394)
T 4gt6_A 138 ELDTVTIPEG--VTSVADG-MFSYCYSLHTVTLPDS-VTAIEERAF-TGTALTQIHIPA--KVTRIGTNAFSE-CFALST 209 (394)
T ss_dssp TCCEEECCTT--CCEECTT-TTTTCTTCCEEECCTT-CCEECTTTT-TTCCCSEEEECT--TCCEECTTTTTT-CTTCCE
T ss_pred ccccccccce--eeeeccc-ceecccccccccccce-eeEeccccc-cccceeEEEECC--cccccccchhhh-ccccce
Confidence 9999999642 2221111 1237899999998764 221222223 235688888764 122222222333 777877
Q ss_pred EecCCCCccchHHHH---------HH--HhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCc--CChhHHHHH
Q 012001 257 LNLSKCQNISHVGLS---------SL--IKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCP--VARSGIKAI 323 (473)
Q Consensus 257 L~l~~~~~~~~~~~~---------~~--~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~--~~~~~~~~l 323 (473)
............... .. ......+..+.+... +.......+..+.+|+.+.+.... +... .+
T Consensus 210 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~--v~~i~~~aF~~c~~L~~i~lp~~~~~I~~~---aF 284 (394)
T 4gt6_A 210 ITSDSESYPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG--VARIETHAFDSCAYLASVKMPDSVVSIGTG---AF 284 (394)
T ss_dssp EEECCSSSCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT--EEEECTTTTTTCSSCCEEECCTTCCEECTT---TT
T ss_pred ecccccccccccceeecccccccccccccccccccceEEcCCc--ceEcccceeeecccccEEecccccceecCc---cc
Confidence 765533211100000 00 000112223332211 111223456778899999887643 2221 11
Q ss_pred HhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCC-CCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHH
Q 012001 324 GNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCC-RKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLI 401 (473)
Q Consensus 324 ~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~ 401 (473)
..+++|+.+.+.. .++..+ ...+.+|.+|+.+.|... ..+.+. ++ ..|.+|+.+.+.. ...+.+..+.
T Consensus 285 -~~c~~L~~i~l~~--~i~~I~-~~aF~~c~~L~~i~lp~~v~~I~~~---aF-~~C~~L~~i~ip~sv~~I~~~aF~-- 354 (394)
T 4gt6_A 285 -MNCPALQDIEFSS--RITELP-ESVFAGCISLKSIDIPEGITQILDD---AF-AGCEQLERIAIPSSVTKIPESAFS-- 354 (394)
T ss_dssp -TTCTTCCEEECCT--TCCEEC-TTTTTTCTTCCEEECCTTCCEECTT---TT-TTCTTCCEEEECTTCCBCCGGGGT--
T ss_pred -ccccccccccCCC--cccccC-ceeecCCCCcCEEEeCCcccEehHh---Hh-hCCCCCCEEEECcccCEEhHhHhh--
Confidence 2678999999864 222211 123667899999999642 223322 22 4689999999953 2334443333
Q ss_pred HhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 402 GQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 402 ~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|++|+.+++.++... ...+..+.+|+.+.+..+
T Consensus 355 --~C~~L~~i~~~~~~~~---~~~~~~~~~L~~i~i~~~ 388 (394)
T 4gt6_A 355 --NCTALNNIEYSGSRSQ---WNAISTDSGLQNLPVAPG 388 (394)
T ss_dssp --TCTTCCEEEESSCHHH---HHTCBCCCCC--------
T ss_pred --CCCCCCEEEECCceee---hhhhhccCCCCEEEeCCC
Confidence 8999999999886432 245667888998888654
No 158
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.91 E-value=3.7e-05 Score=65.40 Aligned_cols=85 Identities=24% Similarity=0.250 Sum_probs=58.6
Q ss_pred hcCCCCCEEEccCCCCCCH-HHHHHHHhcCccCCeeeecccccChh-hhhhhhcCCCCCeeecCCCCCcch------HHH
Q 012001 377 KTCTSLTSLRMECCKLVSW-EAFVLIGQQCQYLEELDITENEVNDE-GLKSISRCSKLSSLKLGICSNITD------EGL 448 (473)
Q Consensus 377 ~~~~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~~~~l~~------~~~ 448 (473)
..+|+|+.|+++++. ++. .++......+++|+.|+|++|.+++. .+..+..+ +|++|++++| .+.. ...
T Consensus 167 ~~l~~L~~L~Ls~N~-l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~N-pl~~~~~~~~~y~ 243 (267)
T 3rw6_A 167 ENIPELLSLNLSNNR-LYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGN-SLCDTFRDQSTYI 243 (267)
T ss_dssp HHCTTCCEEECTTSC-CCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTS-TTGGGCSSHHHHH
T ss_pred hhCCCCCEEECCCCC-CCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCC-cCccccCcchhHH
Confidence 457888888888744 443 33444444789999999999988875 23333334 8999999999 5653 233
Q ss_pred HHHHhcCccCCeeecC
Q 012001 449 KHVGSTCSMLKELDLY 464 (473)
Q Consensus 449 ~~~~~~~~~L~~L~l~ 464 (473)
..+...+|+|+.|+=.
T Consensus 244 ~~il~~~P~L~~LDg~ 259 (267)
T 3rw6_A 244 SAIRERFPKLLRLDGH 259 (267)
T ss_dssp HHHHHHCTTCCEESSC
T ss_pred HHHHHHCcccCeECCc
Confidence 4566789999998643
No 159
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=97.81 E-value=6.1e-06 Score=65.75 Aligned_cols=107 Identities=14% Similarity=0.082 Sum_probs=68.1
Q ss_pred CCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 305 LQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 305 L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
.+.++++++.+..-. .. ..++|+.|++++ +.++.. .+..+..+++|++|+++++. ++.... .....+++|+.
T Consensus 11 ~~~l~~s~n~l~~ip-~~---~~~~l~~L~L~~-N~i~~~-~~~~~~~l~~L~~L~Ls~N~-l~~l~~-~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLASVP-TG---IPTTTQVLYLYD-NQITKL-EPGVFDRLTQLTRLDLDNNQ-LTVLPA-GVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCSSCC-SC---CCTTCSEEECCS-SCCCCC-CTTTTTTCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCE
T ss_pred CCEEEeCCCCcCccC-cc---CCCCCcEEEcCC-CcCCcc-ChhhhcCcccCCEEECCCCC-cCccCh-hhccCCCCCCE
Confidence 456666666544311 11 237899999998 455432 13335678899999999875 553222 12246899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
|+++++. ++......+ ..+++|+.|++++|.++..
T Consensus 83 L~L~~N~-l~~~~~~~~-~~l~~L~~L~L~~N~~~c~ 117 (170)
T 3g39_A 83 LSLNDNQ-LKSIPRGAF-DNLKSLTHIWLLNNPWDCA 117 (170)
T ss_dssp EECCSSC-CCCCCTTTT-TTCTTCCEEECCSSCBCTT
T ss_pred EECCCCc-cCEeCHHHh-cCCCCCCEEEeCCCCCCCC
Confidence 9999854 543222222 2789999999999977644
No 160
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=97.79 E-value=6.7e-06 Score=65.78 Aligned_cols=106 Identities=14% Similarity=0.088 Sum_probs=67.6
Q ss_pred CeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEE
Q 012001 306 QSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSL 385 (473)
Q Consensus 306 ~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 385 (473)
+.++++++.+..- +.. ..++|+.|++++ +.++.. .+..+..+++|+.|+++++. ++.... .....+++|+.|
T Consensus 15 ~~l~~~~n~l~~i-P~~---~~~~L~~L~Ls~-N~l~~~-~~~~~~~l~~L~~L~Ls~N~-l~~i~~-~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLASV-PAG---IPTDKQRLWLNN-NQITKL-EPGVFDHLVNLQQLYFNSNK-LTAIPT-GVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCSSC-CSC---CCTTCSEEECCS-SCCCCC-CTTTTTTCTTCCEEECCSSC-CCCCCT-TTTTTCTTCCEE
T ss_pred cEEEeCCCCCCcc-CCC---cCCCCcEEEeCC-CCcccc-CHHHhcCCcCCCEEECCCCC-CCccCh-hHhCCcchhhEE
Confidence 5666666654321 111 237899999998 455432 13345678999999999875 553221 122468999999
Q ss_pred EccCCCCCCHHHHHHHHhcCccCCeeeecccccChh
Q 012001 386 RMECCKLVSWEAFVLIGQQCQYLEELDITENEVNDE 421 (473)
Q Consensus 386 ~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~ 421 (473)
+++++. ++......+ ..+++|+.|++++|.+...
T Consensus 87 ~L~~N~-l~~l~~~~~-~~l~~L~~L~L~~N~~~c~ 120 (174)
T 2r9u_A 87 DLNDNH-LKSIPRGAF-DNLKSLTHIYLYNNPWDCE 120 (174)
T ss_dssp ECCSSC-CCCCCTTTT-TTCTTCSEEECCSSCBCTT
T ss_pred ECCCCc-cceeCHHHh-ccccCCCEEEeCCCCcccc
Confidence 999854 543221112 3789999999999977643
No 161
>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*
Probab=97.71 E-value=1.1e-05 Score=76.21 Aligned_cols=43 Identities=14% Similarity=0.026 Sum_probs=39.0
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
.-..|++..||+||+.+||+ ||+ .++++++++|||+|++++..
T Consensus 9 ~~~~d~~~~lp~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (464)
T 3v7d_B 9 NLKRDLITSLPFEISLKIFN-YLQ-FEDIINSLGVSQNWNKIIRK 51 (464)
T ss_dssp CCCCCHHHHSCHHHHHHHHT-TSC-HHHHHHHHTTCHHHHHHHTT
T ss_pred ccccCChHHCCHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHHcC
Confidence 34568899999999999999 997 99999999999999998765
No 162
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.55 E-value=2.6e-05 Score=70.31 Aligned_cols=104 Identities=15% Similarity=0.163 Sum_probs=67.2
Q ss_pred EecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccCCCCCCHHHHHHHHhcCccCCeee
Q 012001 333 LSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTSLRMECCKLVSWEAFVLIGQQCQYLEELD 412 (473)
Q Consensus 333 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 412 (473)
++.++.+.++. ++. +..+++|+.|+++++..++......+ ..+++|+.|+|+++ .++...-..+. ++++|+.|+
T Consensus 13 v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~-~~l~~L~~L~l~~N-~l~~~~~~~~~-~l~~L~~L~ 86 (347)
T 2ifg_A 13 LRCTRDGALDS--LHH-LPGAENLTELYIENQQHLQHLELRDL-RGLGELRNLTIVKS-GLRFVAPDAFH-FTPRLSRLN 86 (347)
T ss_dssp EECCSSCCCTT--TTT-SCSCSCCSEEECCSCSSCCEECGGGS-CSCCCCSEEECCSS-CCCEECTTGGG-SCSCCCEEE
T ss_pred EEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCCCCCcChhHh-ccccCCCEEECCCC-ccceeCHHHhc-CCcCCCEEe
Confidence 44444224443 444 55677899999986333553322222 46899999999985 46543222233 789999999
Q ss_pred ecccccChhhhhhhhcCCCCCeeecCCCCCcc
Q 012001 413 ITENEVNDEGLKSISRCSKLSSLKLGICSNIT 444 (473)
Q Consensus 413 l~~~~~~~~~~~~l~~~~~L~~L~l~~~~~l~ 444 (473)
|++|.++......+..++ |+.|++.+| .++
T Consensus 87 l~~N~l~~~~~~~~~~~~-L~~l~l~~N-~~~ 116 (347)
T 2ifg_A 87 LSFNALESLSWKTVQGLS-LQELVLSGN-PLH 116 (347)
T ss_dssp CCSSCCSCCCSTTTCSCC-CCEEECCSS-CCC
T ss_pred CCCCccceeCHHHcccCC-ceEEEeeCC-Ccc
Confidence 999988876544444444 999999998 554
No 163
>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*
Probab=97.47 E-value=6.8e-05 Score=70.21 Aligned_cols=43 Identities=16% Similarity=0.288 Sum_probs=38.7
Q ss_pred ccCCCCcccCcHHHHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 6 KKNSNPFDFLSEEIIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 6 ~~~~~~~~~LP~eil~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
....++++.||+|++.+||+ ||+ .+|+.++++|||+|++++..
T Consensus 13 ~~~~d~~~~lp~e~~~~i~~-~l~-~~~l~~~~~v~~~~~~~~~~ 55 (445)
T 2ovr_B 13 QFQRDFISLLPKELALYVLS-FLE-PKDLLQAAQTCRYWRILAED 55 (445)
T ss_dssp CCCCSTTTSSCHHHHHHHHT-TSC-HHHHHHHTTSCHHHHHHHTC
T ss_pred cccCChhHHCCHHHHHHHHH-hCC-HHHHHHHHHHhHHHHhhcCc
Confidence 34578999999999999999 997 99999999999999998753
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.47 E-value=0.00049 Score=58.50 Aligned_cols=67 Identities=19% Similarity=0.151 Sum_probs=38.4
Q ss_pred hcCCCCcEEecCCCCccchHHHHHHHhcCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCC
Q 012001 249 YSCKSLKALNLSKCQNISHVGLSSLIKGADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVA 316 (473)
Q Consensus 249 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 316 (473)
..+++|+.|+++++....-.++...+..+++|+.|+++++..........+..+ +|+.|++.+|++.
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~~l~~l~~l-~L~~L~L~~Npl~ 233 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGL-KLEELWLDGNSLC 233 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSGGGGGGGTTS-CCSEEECTTSTTG
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCchhhhhcccC-CcceEEccCCcCc
Confidence 347888888888776443333344455667777777776643222222223333 6677777766654
No 165
>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1
Probab=97.42 E-value=4.7e-05 Score=71.11 Aligned_cols=42 Identities=21% Similarity=0.306 Sum_probs=38.3
Q ss_pred cCCCCcccCcHH----HHHHHHhhhcCChhhhhhhhhhhhhHHHHHhh
Q 012001 7 KNSNPFDFLSEE----IIFNILDHLNNDPFARKSFSLTCRNFYSIESR 50 (473)
Q Consensus 7 ~~~~~~~~LP~e----il~~If~~~l~~~~d~~~~~~vc~~w~~~~~~ 50 (473)
-..|++..||+| |+.+||+ ||+ .+++.++++|||+|++++..
T Consensus 6 ~~~d~~~~lp~e~~~~~~~~i~~-~l~-~~~l~~~~~v~~~w~~~~~~ 51 (435)
T 1p22_A 6 LQRDFITALPARGLDHIAENILS-YLD-AKSLCAAELVCKEWYRVTSD 51 (435)
T ss_dssp SCCCHHHHTGGGTCHHHHHHHHT-TCC-HHHHHHHHHHCHHHHHHHHH
T ss_pred hhcChHHHCCcchHHHHHHHHHh-cCC-HHHHHHHHHHHHHHHHHhcC
Confidence 457899999999 9999999 997 99999999999999998754
No 166
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=97.35 E-value=5.5e-05 Score=68.23 Aligned_cols=106 Identities=14% Similarity=0.114 Sum_probs=66.1
Q ss_pred CeeEecCC-cCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHhcCCCCCE
Q 012001 306 QSIKFEDC-PVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITKTCTSLTS 384 (473)
Q Consensus 306 ~~L~l~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 384 (473)
..++.++. .+.. .+. +. .+++|+.|+|++++.++.. ....+..+++|+.|+++++. ++..... ....+++|+.
T Consensus 11 ~~v~~~~~n~l~~-ip~-l~-~~~~L~~L~l~~~n~l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~~~-~~~~l~~L~~ 84 (347)
T 2ifg_A 11 SGLRCTRDGALDS-LHH-LP-GAENLTELYIENQQHLQHL-ELRDLRGLGELRNLTIVKSG-LRFVAPD-AFHFTPRLSR 84 (347)
T ss_dssp SCEECCSSCCCTT-TTT-SC-SCSCCSEEECCSCSSCCEE-CGGGSCSCCCCSEEECCSSC-CCEECTT-GGGSCSCCCE
T ss_pred CEEEcCCCCCCCc-cCC-CC-CCCCeeEEEccCCCCCCCc-ChhHhccccCCCEEECCCCc-cceeCHH-HhcCCcCCCE
Confidence 34566665 5543 222 33 6678999999864566532 12335678999999999875 5543222 2257899999
Q ss_pred EEccCCCCCCHHHHHHHHhcCccCCeeeecccccCh
Q 012001 385 LRMECCKLVSWEAFVLIGQQCQYLEELDITENEVND 420 (473)
Q Consensus 385 L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~ 420 (473)
|+|+++. ++..... ....++ |+.|++.+|.+..
T Consensus 85 L~l~~N~-l~~~~~~-~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 85 LNLSFNA-LESLSWK-TVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp EECCSSC-CSCCCST-TTCSCC-CCEEECCSSCCCC
T ss_pred EeCCCCc-cceeCHH-HcccCC-ceEEEeeCCCccC
Confidence 9999854 5432111 121333 9999999987663
No 167
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.17 E-value=9.2e-06 Score=74.35 Aligned_cols=129 Identities=19% Similarity=0.250 Sum_probs=69.1
Q ss_pred hhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCCCcEEecCCCCCCCHHHHHHHHh
Q 012001 298 CLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKELRKLDITCCRKITYASINSITK 377 (473)
Q Consensus 298 ~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~ 377 (473)
.+..+.+|+.+.+...- ...+...+ ..+.+|+.+.+... ++..+ ...+..+.+|+.+.+... +...+..++ .
T Consensus 212 ~f~~~~~l~~i~~~~~~-~~i~~~~f-~~~~~L~~i~lp~~--v~~I~-~~aF~~~~~l~~i~l~~~--i~~i~~~aF-~ 283 (379)
T 4h09_A 212 GFSYGKNLKKITITSGV-TTLGDGAF-YGMKALDEIAIPKN--VTSIG-SFLLQNCTALKTLNFYAK--VKTVPYLLC-S 283 (379)
T ss_dssp TTTTCSSCSEEECCTTC-CEECTTTT-TTCSSCCEEEECTT--CCEEC-TTTTTTCTTCCEEEECCC--CSEECTTTT-T
T ss_pred ccccccccceeeeccce-eEEccccc-cCCccceEEEcCCC--ccEeC-ccccceeehhcccccccc--ceecccccc-c
Confidence 34456677777765431 11111111 15677888877542 22111 112456677888877532 222111111 3
Q ss_pred cCCCCCEEEccCC--CCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCCCeeecCC
Q 012001 378 TCTSLTSLRMECC--KLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGI 439 (473)
Q Consensus 378 ~~~~L~~L~l~~~--~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 439 (473)
.|++|+.+.+... ..+.+..+ . +|.+|+.+.+..+ ++..+-.++..|++|+.+.+..
T Consensus 284 ~c~~L~~i~l~~~~i~~I~~~aF---~-~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 284 GCSNLTKVVMDNSAIETLEPRVF---M-DCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TCTTCCEEEECCTTCCEECTTTT---T-TCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccccccccceehhhhh---c-CCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence 5778888887642 12222222 2 7788888888653 5555555677788888887754
No 168
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.14 E-value=9.9e-06 Score=74.13 Aligned_cols=143 Identities=15% Similarity=0.142 Sum_probs=78.4
Q ss_pred cCcccceeeccccccCchhHHHhhhCCCCCCeeEecCCcCChhHHHHHHhhCCCCCeEecCCCCCCChHHHHHHHHhCCC
Q 012001 276 GADYLQQLILAYSFWVSADLSKCLHNFPMLQSIKFEDCPVARSGIKAIGNWHGSLKELSLSKCSGVTDEELSFVVQSHKE 355 (473)
Q Consensus 276 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 355 (473)
.+.+|+.+.+... +.......+..+.+|+.+.+..+ +..-+-.. ...+.+|+.+.+.. .+...+ ...+..|++
T Consensus 215 ~~~~l~~i~~~~~--~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~a-F~~~~~l~~i~l~~--~i~~i~-~~aF~~c~~ 287 (379)
T 4h09_A 215 YGKNLKKITITSG--VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFL-LQNCTALKTLNFYA--KVKTVP-YLLCSGCSN 287 (379)
T ss_dssp TCSSCSEEECCTT--CCEECTTTTTTCSSCCEEEECTT-CCEECTTT-TTTCTTCCEEEECC--CCSEEC-TTTTTTCTT
T ss_pred cccccceeeeccc--eeEEccccccCCccceEEEcCCC-ccEeCccc-cceeehhccccccc--cceecc-ccccccccc
Confidence 3556666666432 22222344566778888887654 11111111 12567888888754 222111 123567889
Q ss_pred CcEEecCCCCCCCHHHHHHHHhcCCCCCEEEccC-CCCCCHHHHHHHHhcCccCCeeeecccccChhhhhhhhcCCCC
Q 012001 356 LRKLDITCCRKITYASINSITKTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQYLEELDITENEVNDEGLKSISRCSKL 432 (473)
Q Consensus 356 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~~L 432 (473)
|+.+.+.++. ++..+-.++ ..|.+|+.+.+.. ...+.+.. +. +|.+|+.+.+..+ ++..+-.++..|+.+
T Consensus 288 L~~i~l~~~~-i~~I~~~aF-~~c~~L~~i~lp~~l~~I~~~a---F~-~C~~L~~i~ip~~-v~~I~~~aF~~c~~~ 358 (379)
T 4h09_A 288 LTKVVMDNSA-IETLEPRVF-MDCVKLSSVTLPTALKTIQVYA---FK-NCKALSTISYPKS-ITLIESGAFEGSSIT 358 (379)
T ss_dssp CCEEEECCTT-CCEECTTTT-TTCTTCCEEECCTTCCEECTTT---TT-TCTTCCCCCCCTT-CCEECTTTTTTSSCC
T ss_pred cccccccccc-cceehhhhh-cCCCCCCEEEcCccccEEHHHH---hh-CCCCCCEEEECCc-cCEEchhHhhCCCCC
Confidence 9999886532 221111122 4688999999853 22333333 22 8999999999764 555454556656433
No 169
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=90.32 E-value=0.2 Score=37.16 Aligned_cols=34 Identities=21% Similarity=0.156 Sum_probs=21.7
Q ss_pred cCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 407 YLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 407 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|+.|+|++|.++......+..+++|+.|+|.+|
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 65 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGAN 65 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCC
Confidence 5666666666666655555556666666666666
No 170
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=75.22 E-value=3 Score=30.66 Aligned_cols=33 Identities=18% Similarity=-0.004 Sum_probs=17.2
Q ss_pred CCcEEeeccccCCCCcccccccCcccCeeeccC
Q 012001 203 EIRTLDLSYLPITEKCLPPVVKLQYLEDLVLEG 235 (473)
Q Consensus 203 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 235 (473)
+++.|+|++|.++.-....+..+++|+.|.+.+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 64 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGA 64 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCS
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecC
Confidence 466666666655443333344455555555554
No 171
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=51.37 E-value=2.4 Score=29.42 Aligned_cols=36 Identities=19% Similarity=0.138 Sum_probs=27.9
Q ss_pred cCccCCeeeecccccChhhhhhhhcCCCCCeeecCCC
Q 012001 404 QCQYLEELDITENEVNDEGLKSISRCSKLSSLKLGIC 440 (473)
Q Consensus 404 ~~~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~~ 440 (473)
+|.+|+++.|..+ ++..+-.++..|.+|+.+.+.+.
T Consensus 18 ~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 18 GNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp TCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred CCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 7889999999763 45555566778999999998764
No 172
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=43.05 E-value=14 Score=25.46 Aligned_cols=35 Identities=23% Similarity=0.255 Sum_probs=23.5
Q ss_pred hcCCCCCEEEccC-CCCCCHHHHHHHHhcCccCCeeeecc
Q 012001 377 KTCTSLTSLRMEC-CKLVSWEAFVLIGQQCQYLEELDITE 415 (473)
Q Consensus 377 ~~~~~L~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~ 415 (473)
..|.+|+++.|-. ...+.+..+. +|.+|+.+.+.+
T Consensus 17 ~~c~~L~~i~iP~~v~~Ig~~aF~----~C~~L~~i~~~~ 52 (100)
T 2lz0_A 17 AGNTVIREITVQPNIGLLYDGMFS----GCTALEKLILTG 52 (100)
T ss_dssp TTCTTCCCEEECTTSSCCCTTSST----TCTTCCCEEECC
T ss_pred cCCCCCcEEEcCCchheEcHHHHh----ccCCccEEEEcC
Confidence 3688888888843 2333333333 888999998877
No 173
>2kwv_A RAD30 homolog B, DNA polymerase IOTA; ubiquitin-binding motif, UBM, TL protein binding-signaling protein complex; HET: DNA; NMR {Mus musculus}
Probab=28.06 E-value=26 Score=19.76 Aligned_cols=15 Identities=33% Similarity=0.397 Sum_probs=11.4
Q ss_pred CcccCcHHHHHHHHh
Q 012001 11 PFDFLSEEIIFNILD 25 (473)
Q Consensus 11 ~~~~LP~eil~~If~ 25 (473)
-|..||.||..+|++
T Consensus 20 VF~~LP~dIQ~Ells 34 (48)
T 2kwv_A 20 VFKQLPADIQEEILS 34 (48)
T ss_dssp GTTTSCHHHHHHHTT
T ss_pred HHHHCcHHHHHHHHh
Confidence 467788888888777
Done!