Query 012002
Match_columns 473
No_of_seqs 484 out of 1265
Neff 11.3
Searched_HMMs 29240
Date Mon Mar 25 19:40:26 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012002.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012002hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 1.4E-46 4.8E-51 365.7 34.0 401 26-441 51-481 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 6.3E-39 2.2E-43 308.4 19.0 374 15-423 48-434 (451)
3 3o7q_A L-fucose-proton symport 100.0 2.7E-36 9.1E-41 289.0 28.7 354 14-421 45-431 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 2.7E-33 9.4E-38 272.0 24.5 391 22-425 46-475 (491)
5 2gfp_A EMRD, multidrug resista 100.0 3.9E-35 1.3E-39 274.8 7.7 343 16-412 21-366 (375)
6 2xut_A Proton/peptide symporte 100.0 8.4E-29 2.9E-33 242.4 18.5 142 27-171 51-197 (524)
7 2cfq_A Lactose permease; trans 100.0 6.4E-30 2.2E-34 242.4 6.3 359 21-426 34-404 (417)
8 3o7q_A L-fucose-proton symport 99.5 5.8E-13 2E-17 126.9 14.9 153 235-399 28-181 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 1.6E-12 5.4E-17 124.3 12.4 149 21-172 279-433 (451)
10 2gfp_A EMRD, multidrug resista 99.4 2.3E-12 7.7E-17 120.0 13.2 173 238-425 5-178 (375)
11 2cfq_A Lactose permease; trans 99.4 7E-13 2.4E-17 125.3 7.5 148 27-177 256-405 (417)
12 4aps_A DI-OR tripeptide H+ sym 99.4 2.2E-12 7.5E-17 124.8 10.8 171 235-420 15-194 (491)
13 2xut_A Proton/peptide symporte 99.3 2.8E-11 9.6E-16 118.0 16.3 171 237-421 16-197 (524)
14 4gc0_A D-xylose-proton symport 99.1 4.8E-10 1.6E-14 108.3 12.4 153 23-176 305-467 (491)
15 2g9p_A Antimicrobial peptide l 63.8 3.9 0.00013 19.2 1.5 14 49-62 2-15 (26)
16 4dve_A Biotin transporter BIOY 33.9 63 0.0022 25.9 5.0 25 36-60 99-123 (198)
17 3hd6_A Ammonium transporter RH 25.9 2.9E+02 0.0099 25.8 8.5 13 413-425 412-424 (490)
18 3arc_T Photosystem II reaction 22.5 93 0.0032 16.3 2.6 9 169-177 20-28 (32)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=1.4e-46 Score=365.73 Aligned_cols=401 Identities=28% Similarity=0.466 Sum_probs=320.3
Q ss_pred cCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHH------------------HhhhHHHHH
Q 012002 26 KYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNV------------------AAQNLAMLI 87 (473)
Q Consensus 26 ~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~------------------~~~~~~~l~ 87 (473)
+.++.+.|++.+++.+|..+|++++|+++||+|||++++++.+++.+++++++ +++|+++++
T Consensus 51 ~~~~~~~g~~~s~~~~G~~iG~~~~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~ 130 (491)
T 4gc0_A 51 SAANSLLGFCVASALIGCIIGGALGGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFV 130 (491)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHH
Confidence 34556789999999999999999999999999999999999999999999999 478999999
Q ss_pred HHHHHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccC-----CccchHHHHHhhhHHH
Q 012002 88 VGRILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIK-----SQWGWRISLGLAGIPA 162 (473)
Q Consensus 88 ~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~-----~~~~wr~~f~~~~~~~ 162 (473)
++|+++|+|.|+..+....+++|+.|+++|++..++.+.+..+|.++++.++....... ...+||+.+.+..++.
T Consensus 131 ~~R~l~G~g~G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (491)
T 4gc0_A 131 IYRIIGGIGVGLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPA 210 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999998866544322 2457999999999999
Q ss_pred HHHHHHhhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHH
Q 012002 163 ALLTVGSLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQI 242 (473)
Q Consensus 163 ~~~~~~~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 242 (473)
++..+..+++||+|+|+..+++.+++.+.+++..+++..+++..+.++..+++++.. .... ....++..+......
T Consensus 211 ~~~~~~~~~~peSp~~L~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~ 286 (491)
T 4gc0_A 211 LLFLMLLYTVPESPRWLMSRGKQEQAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLL---MFGVGVIVIGVMLSI 286 (491)
T ss_dssp HHHHHHGGGSCCCHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHH---HSCCTHHHHHHHHHH
T ss_pred hhhhhhhhcCCCChHHHHHcCchhHHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHH---HhcccHHHHHHHHHH
Confidence 888888899999999999999999999998887655433333322222222211111 1111 222344466666667
Q ss_pred HhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhh
Q 012002 243 FQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIK 322 (473)
Q Consensus 243 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (473)
+....+...+..|.|.+.+..+.+...........++..+++.++++++.||+|||+.+..+...+.++.+.+.....
T Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~-- 364 (491)
T 4gc0_A 287 FQQFVGINVVLYYAPEVFKTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFY-- 364 (491)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHH--
T ss_pred HHHHhhhhHHHhcchHHHHhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHh--
Confidence 777778888889999999888888877777888889999999999999999999999999888888877776665442
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhh---
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHF--- 399 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 399 (473)
.....+..+...+++..++..+..++.+.+.+|++|++.|+++.|+.+..+++++.+++.+.+.+.+..
T Consensus 365 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~ 436 (491)
T 4gc0_A 365 --------TQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLV 436 (491)
T ss_dssp --------TTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHH
T ss_pred --------cccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222334445555556666677777888899999999999999999999999999999998887765432
Q ss_pred ---h-hhHHHHHHHHHHHHHHHHHhhccCCCCCChHHHHHHHhccc
Q 012002 400 ---K-FGIFLFFSGWVLIMSCFVFFLLPETKNVPIEEMTERVWKQH 441 (473)
Q Consensus 400 ---~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (473)
+ ...++++++++++..++.++++||||++++||+ |+.++++
T Consensus 437 ~~~~~~~~~~i~~~~~~~~~i~~~~~~PETkg~tLeei-~~~f~~~ 481 (491)
T 4gc0_A 437 AHFHNGFSYWIYGCMGVLAALFMWKFVPETKGKTLEEL-EALWEPE 481 (491)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHHCCCCTTCCHHHH-GGGTC--
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHheecCCCCCCHHHH-HHHhCCC
Confidence 1 224566677777778888899999999999998 6666544
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=6.3e-39 Score=308.41 Aligned_cols=374 Identities=14% Similarity=0.069 Sum_probs=276.5
Q ss_pred ccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHH----hhhHHHHHHHH
Q 012002 15 RTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVA----AQNLAMLIVGR 90 (473)
Q Consensus 15 ~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~----~~~~~~l~~~r 90 (473)
....|.+.+++ ++..+.|++.+++.+++.++++++|+++||+|||++++++.++.+++.+++++ +++++.++++|
T Consensus 48 ~~~~~~~~~~~-~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 126 (451)
T 1pw4_A 48 ALAMPYLVEQG-FSRGDLGFALSGISIAYGFSKFIMGSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLL 126 (451)
T ss_dssp HHHHHHTTSST-TCSSCHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHH
T ss_pred HHHHHHHHHHh-ccHhHHHHHHHHHHHHHHHHHHhHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHH
Confidence 34456788888 99999999999999999999999999999999999999999999999999999 99999999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc-hHHHHHhhhHHHHHHHHH-
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-WRISLGLAGIPAALLTVG- 168 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-wr~~f~~~~~~~~~~~~~- 168 (473)
+++|++.+...+...+++.|++|+++|++++++.+.+.++|.+++|.++.. +.+..+ ||+.|++.+++.++..++
T Consensus 127 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~---l~~~~g~w~~~f~~~~~~~~~~~~~~ 203 (451)
T 1pw4_A 127 FLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLL---GMAWFNDWHAALYMPAFCAILVALFA 203 (451)
T ss_dssp HHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHH---HHHHTCCSTTCTHHHHHHHHHHHHHH
T ss_pred HHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999543 334567 999999999888776655
Q ss_pred hhcccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccc--hHHhhcccCchhHHHHHHHHHHhhc
Q 012002 169 SLLVTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHP--FRNLLKRRNRPQLVIAVALQIFQQC 246 (473)
Q Consensus 169 ~~~~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (473)
.+++||+|+....+++.++. ...+.+ . ++.++++....+ .++.++++. ++...+..++..
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~ 265 (451)
T 1pw4_A 204 FAMMRDTPQSCGLPPIEEYK----------NDYPDD---Y-NEKAEQELTAKQIFMQYVLPNKL----LWYIAIANVFVY 265 (451)
T ss_dssp HHHCCCSSTTTCCCSCTTTC----------CC-----------------CCTHHHHHHTSSCHH----HHHHHHHHHHHH
T ss_pred HhhccCCHhhcCCCChhhhc----------cccccc---c-hhhhhcccccccchHHHHHcCHH----HHHHHHHHHHHH
Confidence 46688887543221111100 000000 0 000000111111 233343333 666666666666
Q ss_pred chhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhc--CcchhHhHHhHHHH-HHHHHHHHHHhhh
Q 012002 247 TGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKV--GRRMLLLEAGIQMF-LSQTVIAIILGIK 322 (473)
Q Consensus 247 ~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~--~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 322 (473)
.....+..+.|.++++ +|++..+.+...+...++.+++.++.+++.||+ +||+.+..+..+.. ++.+++...
T Consensus 266 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 341 (451)
T 1pw4_A 266 LLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN---- 341 (451)
T ss_dssp HHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC----
T ss_pred HHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh----
Confidence 7777888899998887 899999999999999999999999999999999 99888776655544 333222210
Q ss_pred hccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHH-HHHHHHHHHHHHhhhhhh
Q 012002 323 VKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLL-FTFVIAQAFLSMLCHFKF 401 (473)
Q Consensus 323 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 401 (473)
+....+.......+.+ .......+....+..|.+|++.|+++.|+.+....+ +..++|.+.|.+.+..++
T Consensus 342 --------~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~ 412 (451)
T 1pw4_A 342 --------PAGNPTVDMICMIVIG-FLIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGW 412 (451)
T ss_dssp --------CTTCHHHHHHHHHHHH-HHHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCS
T ss_pred --------cccCHHHHHHHHHHHH-HHHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 1112222222222222 222233344567778999999999999999999999 999999999999998887
Q ss_pred hHHHHHHHHHHHHHHHHHhhcc
Q 012002 402 GIFLFFSGWVLIMSCFVFFLLP 423 (473)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~~~ 423 (473)
...+.+.+++.+++.+..++.+
T Consensus 413 ~~~~~~~~~~~~~~~~~~~~~~ 434 (451)
T 1pw4_A 413 DGGFMVMIGGSILAVILLIVVM 434 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 7666666655555555554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=2.7e-36 Score=288.95 Aligned_cols=354 Identities=12% Similarity=0.063 Sum_probs=267.8
Q ss_pred hccccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHH---HHhhhHHHHHHHH
Q 012002 14 RRTQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFN---VAAQNLAMLIVGR 90 (473)
Q Consensus 14 ~~~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~---~~~~~~~~l~~~r 90 (473)
.....|.+.+++|++..+.|++.+.+.+++.++++++|+++||+|||++++++.++.+++.+++ +++++++.++++|
T Consensus 45 ~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 124 (438)
T 3o7q_A 45 NDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGL 124 (438)
T ss_dssp HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHH
Confidence 3444566788899999999999999999999999999999999999999999999999999999 8889999999999
Q ss_pred HHHhhhhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccc--------------------
Q 012002 91 ILLGCGVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWG-------------------- 150 (473)
Q Consensus 91 ~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~-------------------- 150 (473)
+++|++.+...+...+++.|++|+++|++++++.+.+.++|.++++.++..... +..+
T Consensus 125 ~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~--~~~~~~~~~~~~~~~~~~~~~~~~ 202 (438)
T 3o7q_A 125 FIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLIL--SNVPHQSQDVLDKMSPEQLSAYKH 202 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHH--TSSCCCCHHHHHHSCHHHHHHHHH
T ss_pred HHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cccccccccccccCCcchhhhhhh
Confidence 999999999999999999999999999999999999999999999999554430 2222
Q ss_pred -----hHHHHHhhhHHHHHHHHHhhc--ccCChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchH
Q 012002 151 -----WRISLGLAGIPAALLTVGSLL--VTDTPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFR 223 (473)
Q Consensus 151 -----wr~~f~~~~~~~~~~~~~~~~--~~e~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (473)
||+.|++.+++.++..++.++ .||+++. ++++ +++++.+.+++
T Consensus 203 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~---~~~~---------------------------~~~~~~~~~~~ 252 (438)
T 3o7q_A 203 SLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD---NHSD---------------------------AKQGSFSASLS 252 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT---CCCC---------------------------SSTTSHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc---cccc---------------------------ccccchhhhHH
Confidence 999998888777666555433 4554321 0000 00111123455
Q ss_pred HhhcccCchhHHHHHHHHHHhhcchhHHHHHhHHHH-HHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhH
Q 012002 224 NLLKRRNRPQLVIAVALQIFQQCTGINAIMFYAPVL-FKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLL 301 (473)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~ 301 (473)
+++|++. ++...+..++..........+.|.+ +++ +|++..+++.......++.+++.++.+++.||++||+.+
T Consensus 253 ~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~ 328 (438)
T 3o7q_A 253 RLARIRH----WRWAVLAQFCYVGAQTACWSYLIRYAVEEIPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVL 328 (438)
T ss_dssp HHTTCSH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH
T ss_pred HHHhChH----HHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHH
Confidence 6666655 4455555555556667777888888 777 599999999999999999999999999999999999999
Q ss_pred hHHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHH
Q 012002 302 LEAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVN 381 (473)
Q Consensus 302 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ 381 (473)
..+.+...++.++.... +. . +. .....+.. .+.....+..+.+..|.+|++ ++.+.++.. .+
T Consensus 329 ~~~~~~~~~~~~~~~~~------------~~-~-~~-~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~ 390 (438)
T 3o7q_A 329 AAYALIAMALCLISAFA------------GG-H-VG-LIALTLCS-AFMSIQYPTIFSLGIKNLGQD-TKYGSSFIV-MT 390 (438)
T ss_dssp HHHHHHHHHHHHHHHHC------------CH-H-HH-HHHHHHHH-HHHTTHHHHHHHHHHSSCGGG-HHHHHHHHH-HT
T ss_pred HHHHHHHHHHHHHHHHc------------CC-c-HH-HHHHHHHH-HHHHHHHHHHHHHHHhhcccc-ccchhhHHH-HH
Confidence 88877766665544432 11 1 11 12222222 223333456677777888876 888888777 67
Q ss_pred HHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHhh
Q 012002 382 LLFTFVIAQAFLSMLCHFK-FGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 421 (473)
.+++.++|.+.|.+.+..+ +...+.+.+++.+...+..+.
T Consensus 391 ~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 431 (438)
T 3o7q_A 391 IIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF 431 (438)
T ss_dssp THHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 7999999999999999988 766666555554444443333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=2.7e-33 Score=272.02 Aligned_cols=391 Identities=13% Similarity=0.061 Sum_probs=250.3
Q ss_pred CCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhh-hhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhh
Q 012002 22 SNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRR-LGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFA 100 (473)
Q Consensus 22 ~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr-~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 100 (473)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 44589999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred hhhhhHHHhhcCCCCC--chhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc-cCChh
Q 012002 101 NQAVPLFLSEIAPTRI--RGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV-TDTPN 177 (473)
Q Consensus 101 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~-~e~p~ 177 (473)
.+...++++|++|+++ |+.++++++.+.++|..++|.++ +.+.++.|||+.|++.++..++..++.++. ++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~---~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 202 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIV---GAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLD 202 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHH---HHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCccccc
Confidence 9999999999999988 77788889999999999999994 445556789999999877776665554332 22110
Q ss_pred ----hHHhhCChHHHHHHHHH----------------HhCCCCchHHHHHHHHH---------HhhhhhcccchHHhhcc
Q 012002 178 ----SLIERGRFEEGKAVLRK----------------IRGTDKIEPEFLELVEA---------SRIAKEVKHPFRNLLKR 228 (473)
Q Consensus 178 ----~~~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~ 228 (473)
....+.+.++.++..+. ..+..+.+......... ....++...+.. .+.
T Consensus 203 ~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 280 (491)
T 4aps_A 203 PHYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST--EHL 280 (491)
T ss_dssp SCCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC-------------
T ss_pred ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH--HHH
Confidence 00111122222222221 11111111110000000 000000000000 111
Q ss_pred cCchhHHHHHHHHHHhhcchhHHHHHhHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHh-----
Q 012002 229 RNRPQLVIAVALQIFQQCTGINAIMFYAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLL----- 302 (473)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~----- 302 (473)
+. .. .+...+..+.....+.....+.|.+.++ .+.+....+.......+..+++.++.+++.||++||+...
T Consensus 281 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~ 358 (491)
T 4aps_A 281 RV-VS-YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFA 358 (491)
T ss_dssp -C-TT-HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHH
T ss_pred HH-HH-HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHH
Confidence 11 11 2222222333333334444556666655 6777677888888899999999999999999999987655
Q ss_pred HHhHHHHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHH
Q 012002 303 EAGIQMFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNL 382 (473)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 382 (473)
.+..+..++..++....... ... .....+.......+ .+.......+..+.+..|.+|++.|+++.|+.+....
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~--~~~---~~~~~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~ 432 (491)
T 4aps_A 359 VGLMFAGLSFLLMAIPGALY--GTS---GKVSPLWLVGSWAL-VILGEMLISPVGLSVTTKLAPKAFNSQMMSMWFLSSS 432 (491)
T ss_dssp HHHHHHHHHHTTTHHHHHHC--CCC---TTCCTHHHHHHHHH-HHHHHHTTTTHHHHHHHHHTTTTCSSSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhc--CCC---CCccHHHHHHHHHH-HHHHHHHHhHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 44444444444443322110 000 11122222222222 2233333345667788999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhhccCC
Q 012002 383 LFTFVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFLLPET 425 (473)
Q Consensus 383 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (473)
+|..+++.+.+.+.+......+...+++..+.+++.++..++.
T Consensus 433 ~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 475 (491)
T 4aps_A 433 VGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI 475 (491)
T ss_dssp HHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988776544455555555555555555544443
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=3.9e-35 Score=274.84 Aligned_cols=343 Identities=14% Similarity=0.126 Sum_probs=259.0
Q ss_pred cccCCCCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Q 012002 16 TQQGDDSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGC 95 (473)
Q Consensus 16 ~~~~~~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~ 95 (473)
+..|.+.+++|.++.+.+++.+.+.+++.++++++|+++||+|||+++..+..+.+++.++++++++++.+++.|+++|+
T Consensus 21 ~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~ 100 (375)
T 2gfp_A 21 PAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGM 100 (375)
T ss_dssp HHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 34456778899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHH-hhcccC
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVG-SLLVTD 174 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~-~~~~~e 174 (473)
+.+...+...+++.|++|+++|++++++.+.+..+|..++|.+ .+.+.+..+||+.|++.+++.++..+. .+++||
T Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 177 (375)
T 2gfp_A 101 GTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI---GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPE 177 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH---HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCC
T ss_pred HHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH---HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcc
Confidence 9999999999999999999999999999999999999999999 455556679999999998888777764 556787
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+++... + +++.+.++++.+|++. ++...+..++..........
T Consensus 178 ~~~~~~---~------------------------------~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 220 (375)
T 2gfp_A 178 TRPVDA---P------------------------------RTRLLTSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEA 220 (375)
T ss_dssp CSTTTC---C------------------------------CCCTTTCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCCc---c------------------------------cccHHHHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHH
Confidence 653210 0 0112334555665554 44455555555556667777
Q ss_pred hHHHHHHH-cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHH-HHHHHHHHHHHHhhhhccCCcccch
Q 012002 255 YAPVLFKT-LGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQ-MFLSQTVIAIILGIKVKDHSEDLHT 332 (473)
Q Consensus 255 ~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (473)
+.|.+.++ +|.++.+.+.......++.+++.++.+++.||++++ +..+... ...+......... ..
T Consensus 221 ~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~--~~~~~~~~~~~~~~~~~~~~~----------~~ 288 (375)
T 2gfp_A 221 CSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL--MWQSVICCLLAGLLMWIPDWF----------GV 288 (375)
T ss_dssp HCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH--HHHHHHHHHHTSSSSSHHHHH----------HH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhh----------cc
Confidence 88877766 888888999999999999999999999999998872 2222222 1111111111100 11
Q ss_pred hhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHH
Q 012002 333 GFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSGWVL 412 (473)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 412 (473)
...+.......+...+. ....+....+..|..| +.|+++.|+.+....++..+++.+.+.+.+..++...+.+.++..
T Consensus 289 ~~~~~~~~~~~l~g~~~-~~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 289 MNVWTLLVPAALFFFGA-GMLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHHHHHHHHHH-HHTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHH-HHhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 12222222223333222 2334566777889988 889999999999999999999999999988777666665544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=8.4e-29 Score=242.42 Aligned_cols=142 Identities=18% Similarity=0.264 Sum_probs=129.1
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhh-hhHHHHHHHHHHHHHHHHHHHHhh-hHHHHHHHHHHHhhhhhhhhhhh
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRL-GRRLTMLIAGIFFIAGVAFNVAAQ-NLAMLIVGRILLGCGVGFANQAV 104 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~-Grr~~l~~~~~l~~i~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 104 (473)
++..+.+++.+.+.++..++.+++|+++||+ |||+++.++.++.+++.+++++++ +++.++++|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 9999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hHHHhhcCCCCCchhhHHH---HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhc
Q 012002 105 PLFLSEIAPTRIRGGLNIL---FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLL 171 (473)
Q Consensus 105 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~ 171 (473)
.+++.|++|+++|+++.+. .+.+.++|.+++|.+ .+.+.+..+||+.|++.+++.++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~---~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS---MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT---STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH---HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 899999999999999 555555678999999988887766655443
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.96 E-value=6.4e-30 Score=242.35 Aligned_cols=359 Identities=13% Similarity=0.048 Sum_probs=220.1
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHH---HHHHhhhH-HHHHHHHHHHhhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVA---FNVAAQNL-AMLIVGRILLGCG 96 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~---~~~~~~~~-~~l~~~r~l~G~~ 96 (473)
+++++|+|..+.|++.+.+.+++.++++++|+++||+|||++++++..+++++.. .+.+++.. ..++..+++.|++
T Consensus 34 l~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 113 (417)
T 2cfq_A 34 LHDINHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIY 113 (417)
T ss_dssp HHTTTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSS
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5567899999999999999999999999999999999999999998887765322 12233222 1244567777776
Q ss_pred hhhhhhhhhHHHhhcCCC--CCchhhHHHHHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcccC
Q 012002 97 VGFANQAVPLFLSEIAPT--RIRGGLNILFQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLVTD 174 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~~e 174 (473)
.+...+.....+.++.++ ++|+...+......++|..++|.++.... + .+||+.|++.++..++..+..++.+|
T Consensus 114 ~g~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~~~l~---~-~~~~~~f~~~~~~~~~~~~~~~~~~~ 189 (417)
T 2cfq_A 114 LGFCFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIVGIMF---T-INNQFVFWLGSGCALILAVLLFFAKT 189 (417)
T ss_dssp TTHHHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHHHHHH---H-HCSHHHHTTTTTTTTTHHHHSCSSCC
T ss_pred HHHHHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHH---H-hchhHHHHHHHHHHHHHHHHHHHcCc
Confidence 666555555555555433 34566777777777888888888854433 2 47999999888776555555555444
Q ss_pred ChhhHHhhCChHHHHHHHHHHhCCCCchHHHHHHHHHHhhhhhcccchHHhhcccCchhHHHHHHHHHHhhcchhHHHHH
Q 012002 175 TPNSLIERGRFEEGKAVLRKIRGTDKIEPEFLELVEASRIAKEVKHPFRNLLKRRNRPQLVIAVALQIFQQCTGINAIMF 254 (473)
Q Consensus 175 ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 254 (473)
+|+. +.+.++ ..+. ++++....+++++++++. ++...+..+.....+..+..
T Consensus 190 ~~~~---~~~~~~----------~~~~-----------~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~ 241 (417)
T 2cfq_A 190 DAPS---SATVAN----------AVGA-----------NHSAFSLKLALELFRQPK----LWFLSLYVIGVSCTYDVFDQ 241 (417)
T ss_dssp CCSC---SSCSSS----------SSSS-----------CCCCCCHHHHHHHTTCHH----HHHHHHHHHHHHHHHHHHHH
T ss_pred cccc---cccccc----------cccc-----------ccccccHHHHHHHhcCCc----hhhHHHHHHHHHHHHHHHHH
Confidence 3311 000000 0000 000000112344555443 32333332322333444445
Q ss_pred hHHHHHHH-cC---CCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHHHHhhhhccCCccc
Q 012002 255 YAPVLFKT-LG---FGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAIILGIKVKDHSEDL 330 (473)
Q Consensus 255 ~~~~~~~~-~g---~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (473)
+.|.++.+ ++ .+....+.......++.+++.++.++++||++||+.+..+....++....+...
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~------------ 309 (417)
T 2cfq_A 242 QFANFFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA------------ 309 (417)
T ss_dssp HHHHHHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC------------
T ss_pred HHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh------------
Confidence 56766654 33 223445667777778888999999999999999998887666655544333211
Q ss_pred chhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHH-HHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHH
Q 012002 331 HTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVT-VCVNLLFTFVIAQAFLSMLCHFKFGIFLFFSG 409 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (473)
+ ..+..+....+...... ...+..+.+.+|.+|++.|+++.++. +....+|+.++|.+.|.+.+..++...+.+.+
T Consensus 310 ~--~~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~ 386 (417)
T 2cfq_A 310 T--SALEVVILKTLHMFEVP-FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLG 386 (417)
T ss_dssp C--SHHHHHHHTTHHHHHHH-HHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHH
T ss_pred c--cHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHH
Confidence 1 11112111111111111 11123356788999999999999994 78888999999999999998877666555555
Q ss_pred HHHHHHHHH-HhhccCCC
Q 012002 410 WVLIMSCFV-FFLLPETK 426 (473)
Q Consensus 410 ~~~~~~~~~-~~~~~~~~ 426 (473)
+..+++.+. ++..++++
T Consensus 387 ~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 387 LVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHHHHHHTTSSCCSC
T ss_pred HHHHHHHHHHHhhhcCCC
Confidence 554444444 44444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.47 E-value=5.8e-13 Score=126.86 Aligned_cols=153 Identities=7% Similarity=-0.087 Sum_probs=116.4
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTV 314 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~ 314 (473)
++...+..+.............|.+.+++|.+..+.+++.+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 44555555555555667777888888899999999999999999999999999999999999999999998888888777
Q ss_pred HHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHH
Q 012002 315 IAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLS 394 (473)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 394 (473)
...... . ...+..++...+ .+.......+....++.|.+|+++|+.+.++.+....+|..+++.+.+.
T Consensus 108 ~~~~~~----------~-~~~~~l~~~~~l-~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~ 175 (438)
T 3o7q_A 108 FWPAAE----------I-MNYTLFLVGLFI-IAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQS 175 (438)
T ss_dssp HHHHHH----------T-TCHHHHHHHHHH-HHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTH
T ss_pred HHhccc----------c-ccHHHHHHHHHH-HHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 643211 1 112222222222 2222333334557788999999999999999999999999999999998
Q ss_pred Hh-hhh
Q 012002 395 ML-CHF 399 (473)
Q Consensus 395 ~~-~~~ 399 (473)
+. +..
T Consensus 176 l~~~~~ 181 (438)
T 3o7q_A 176 LILSNV 181 (438)
T ss_dssp HHHTSS
T ss_pred HHhccc
Confidence 88 443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.39 E-value=1.6e-12 Score=124.33 Aligned_cols=149 Identities=13% Similarity=0.102 Sum_probs=128.5
Q ss_pred CCCcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhh--hhHHHHHHHHHHHH-HHHHHHHHh--hhHHHHHHHHHHHhh
Q 012002 21 DSNYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRL--GRRLTMLIAGIFFI-AGVAFNVAA--QNLAMLIVGRILLGC 95 (473)
Q Consensus 21 ~~~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~--Grr~~l~~~~~l~~-i~~~~~~~~--~~~~~l~~~r~l~G~ 95 (473)
+++.+|++..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|+
T Consensus 279 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 358 (451)
T 1pw4_A 279 LKEVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGF 358 (451)
T ss_dssp BTTBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHH
Confidence 4455799999999999999999999999999999999 99999988887776 666666665 367788888999999
Q ss_pred hhhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHH-HHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHhhcc
Q 012002 96 GVGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTI-GILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGSLLV 172 (473)
Q Consensus 96 ~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~~~~ 172 (473)
+.+...+....++.|.+|+++|++++++.+....+ |..++|.+ .+.+.+..||+..|++.++..++..++.+++
T Consensus 359 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~---~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 359 LIYGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI---VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHTHHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999 5555566789999999888887777665544
No 10
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.39 E-value=2.3e-12 Score=120.03 Aligned_cols=173 Identities=13% Similarity=0.021 Sum_probs=127.2
Q ss_pred HHHHHHhhcchhHHHHHhHHHHHHHcCCCCcchHHHHHHHHHHHHHHHHHHHHHHhhcCcchhHhHHhHHHHHHHHHHHH
Q 012002 238 VALQIFQQCTGINAIMFYAPVLFKTLGFGGSASLYSTVITGAVNVLSTLVSIYSVDKVGRRMLLLEAGIQMFLSQTVIAI 317 (473)
Q Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~~~~~~~~~~~~~~~~~~~~~ 317 (473)
..+..+.............|.+.+++|.+..+.+...+...++..++.++.|+++||+|||+.+..+.....++......
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~ 84 (375)
T 2gfp_A 5 LVLLVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVT 84 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHH
Confidence 34444445555566667778888889999999999999999999999999999999999999999988888887777665
Q ss_pred HHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHhh
Q 012002 318 ILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSVTVCVNLLFTFVIAQAFLSMLC 397 (473)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 397 (473)
.. +.+... ...+..+.......+....+..|.+|+++|+++.++.+....+|..++|.+.+.+.+
T Consensus 85 ~~--------------~~~~l~-~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~ 149 (375)
T 2gfp_A 85 TS--------------SLTVLI-AASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDT 149 (375)
T ss_dssp HH--------------HHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred hc--------------cHHHHH-HHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 31 122222 222222333333345666778899999999999999999999999999999999988
Q ss_pred hhhhhHHHHHHHHHHHHHHH-HHhhccCC
Q 012002 398 HFKFGIFLFFSGWVLIMSCF-VFFLLPET 425 (473)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 425 (473)
..++...+.+.++..+...+ ..+..||+
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (375)
T 2gfp_A 150 MWNWRACYLFLLVLCAGVTFSMARWMPET 178 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHCCCCCSSCCC
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHCccc
Confidence 87777666555544444433 44455554
No 11
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.36 E-value=7e-13 Score=125.26 Aligned_cols=148 Identities=15% Similarity=0.204 Sum_probs=123.3
Q ss_pred CCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhhhhhhhhhH
Q 012002 27 YDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQNLAMLIVGRILLGCGVGFANQAVPL 106 (473)
Q Consensus 27 ~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~ 106 (473)
.+....+++.+...++..++.++.|+++||+|||+++..+..+.+++.++.++.++.+.+++..++.+++.+...+....
T Consensus 256 ~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 335 (417)
T 2cfq_A 256 QGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFK 335 (417)
T ss_dssp HHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788888888999999999999999999999999999888888878877888888888888889888777788889
Q ss_pred HHhhcCCCCCchhhHHH-HHHHHHHHHHHHHHHhhhccccCCccchHHHHHhhhHHHHHHHHHh-hcccCChh
Q 012002 107 FLSEIAPTRIRGGLNIL-FQLNVTIGILFANLVNYGTSHIKSQWGWRISLGLAGIPAALLTVGS-LLVTDTPN 177 (473)
Q Consensus 107 ~i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~~wr~~f~~~~~~~~~~~~~~-~~~~e~p~ 177 (473)
++.|.+|++.|+++.++ ++....+|.+++|.+ .+.+.++.|++..|.+.+++.++..++. .+.+|.++
T Consensus 336 ~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l---~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~ 405 (417)
T 2cfq_A 336 YITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL---AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP 405 (417)
T ss_dssp HHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH---HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred HHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh---HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence 99999999999999998 478888999999999 4555556788999998888877776664 44666543
No 12
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.36 E-value=2.2e-12 Score=124.78 Aligned_cols=171 Identities=14% Similarity=0.105 Sum_probs=123.2
Q ss_pred HHHHHHHHHhhcchhHHHHHhHHHHHH-H-----cCCCCcchHHHHHHHHHHHHHHHHHHHHHHhh-cCcchhHhHHhHH
Q 012002 235 VIAVALQIFQQCTGINAIMFYAPVLFK-T-----LGFGGSASLYSTVITGAVNVLSTLVSIYSVDK-VGRRMLLLEAGIQ 307 (473)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~~~~~~~~~~~ 307 (473)
++......++....++.+..+.+.+++ . +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~ 94 (491)
T 4aps_A 15 LSTLFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVL 94 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 455555555566666667666666664 4 89999999999999999999999999999999 8999999988888
Q ss_pred HHHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccc--hhhhHHHHHHHHHHHH
Q 012002 308 MFLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLET--RSAGQSVTVCVNLLFT 385 (473)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~~~~~~~~~~~~ 385 (473)
..++.++.... + . .+.......+ .+.......+....++.|.+|++. |+.+.++.+....+|.
T Consensus 95 ~~~~~~~~~~~------------~-~-~~~~~~~~~l-~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~ 159 (491)
T 4aps_A 95 IMLGHIVLALP------------F-G-ASALFGSIIL-IIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGA 159 (491)
T ss_dssp HHHHHHHHHSC------------C-S-TTHHHHHHHH-HHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHh------------h-h-HHHHHHHHHH-HHHHHHhccchHHHHHHHHcCcccccceeeehHHHHHHHHHH
Confidence 77777665432 1 1 1112222222 222222233566777889999988 7788888899999999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHh
Q 012002 386 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFF 420 (473)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (473)
.++|.+.+.+.+..++...+...++..+.+.+..+
T Consensus 160 ~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 160 FIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888877766665555554444443
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.32 E-value=2.8e-11 Score=118.03 Aligned_cols=171 Identities=12% Similarity=0.057 Sum_probs=121.3
Q ss_pred HHHHHHHhhcchhHHHHHhHHHHHH-HcC------CCCcchHHHHHHHHHHHHHHHHHHHHHHhhc-CcchhHhHHhHHH
Q 012002 237 AVALQIFQQCTGINAIMFYAPVLFK-TLG------FGGSASLYSTVITGAVNVLSTLVSIYSVDKV-GRRMLLLEAGIQM 308 (473)
Q Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~~~~~~~~~~~~ 308 (473)
...+..++....++....+.+.++. ++| ++..+.+.+.+...++..++.++.|+++||+ |||+.+..+.++.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~ 95 (524)
T 2xut_A 16 YIIASEACERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIY 95 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 3444444555556666677776664 588 9999999999999999999999999999999 9999999888777
Q ss_pred HHHHHHHHHHHhhhhccCCcccchhhHHHHHHHHHHHHHhhhccccccccccccccccccchhhhHHH---HHHHHHHHH
Q 012002 309 FLSQTVIAIILGIKVKDHSEDLHTGFAVLVVIMICTFISAFAWSWGPLGWLIPSETFPLETRSAGQSV---TVCVNLLFT 385 (473)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~---~~~~~~~~~ 385 (473)
.++.++.... + ...+...... +..+.......+...+++.|.+|++.|+++.+. .+....+|.
T Consensus 96 ~~~~~~~~~~------------~-~~~~~~~~~~-~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~ 161 (524)
T 2xut_A 96 CVGHAFLAIF------------E-HSVQGFYTGL-FLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGS 161 (524)
T ss_dssp HHHHHHHHHT------------S-SCHHHHHHHH-HHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHh------------c-ccHHHHHHHH-HHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHH
Confidence 7776665542 1 0122222222 222333333445667788999999999776666 888899999
Q ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHhh
Q 012002 386 FVIAQAFLSMLCHFKFGIFLFFSGWVLIMSCFVFFL 421 (473)
Q Consensus 386 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 421 (473)
.++|.+.+.+.+..++...+.+.++..+.+.+..++
T Consensus 162 ~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 162 FFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988777776666655555554444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.10 E-value=4.8e-10 Score=108.31 Aligned_cols=153 Identities=18% Similarity=0.089 Sum_probs=108.4
Q ss_pred CcccCCCchhHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHhh-----hHHHHHH-HHHHHhhh
Q 012002 23 NYCKYDNQGLQLFTSSLYLAGLTATFFASYTTRRLGRRLTMLIAGIFFIAGVAFNVAAQ-----NLAMLIV-GRILLGCG 96 (473)
Q Consensus 23 ~~~~~s~~~~~~~~s~~~~~~~~~~~~~g~l~Dr~Grr~~l~~~~~l~~i~~~~~~~~~-----~~~~l~~-~r~l~G~~ 96 (473)
+..+.+............+...++.++++++.||+|||+.++.+....+++.+..+... +...+.. .-+..+.+
T Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 384 (491)
T 4gc0_A 305 KTLGASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFA 384 (491)
T ss_dssp HHSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HhcCCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHH
Confidence 34455666677777788888999999999999999999999999888888777665432 1122222 22222222
Q ss_pred hhhhhhhhhHHHhhcCCCCCchhhHHHHHHHHHHHHHHHHHHhhhccc---cCCccchHHHHHhhhHHHHHHHHH-hhcc
Q 012002 97 VGFANQAVPLFLSEIAPTRIRGGLNILFQLNVTIGILFANLVNYGTSH---IKSQWGWRISLGLAGIPAALLTVG-SLLV 172 (473)
Q Consensus 97 ~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~---~~~~~~wr~~f~~~~~~~~~~~~~-~~~~ 172 (473)
. ...+....+.+|.+|.+.|++++++......+|.++++.+...... .....++.+.|++.++++++..+. ++++
T Consensus 385 ~-~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~ 463 (491)
T 4gc0_A 385 M-SWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV 463 (491)
T ss_dssp T-TTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred h-HHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence 2 3456778899999999999999999999988998888766322211 111245666788888888777766 5678
Q ss_pred cCCh
Q 012002 173 TDTP 176 (473)
Q Consensus 173 ~e~p 176 (473)
||+.
T Consensus 464 PETk 467 (491)
T 4gc0_A 464 PETK 467 (491)
T ss_dssp CCCT
T ss_pred cCCC
Confidence 9975
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=63.82 E-value=3.9 Score=19.15 Aligned_cols=14 Identities=14% Similarity=0.375 Sum_probs=11.4
Q ss_pred HHHHhhhhhhhHHH
Q 012002 49 FASYTTRRLGRRLT 62 (473)
Q Consensus 49 ~~g~l~Dr~Grr~~ 62 (473)
++|.+..++|||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46889999999864
No 16
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=33.86 E-value=63 Score=25.89 Aligned_cols=25 Identities=16% Similarity=0.269 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhH
Q 012002 36 TSSLYLAGLTATFFASYTTRRLGRR 60 (473)
Q Consensus 36 ~s~~~~~~~~~~~~~g~l~Dr~Grr 60 (473)
..-|.+|+.+++.+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3467788889999999999997644
No 17
>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}
Probab=25.89 E-value=2.9e+02 Score=25.81 Aligned_cols=13 Identities=15% Similarity=0.071 Sum_probs=5.6
Q ss_pred HHHHHHHhhccCC
Q 012002 413 IMSCFVFFLLPET 425 (473)
Q Consensus 413 ~~~~~~~~~~~~~ 425 (473)
+.+.+..+.++.+
T Consensus 412 v~~~ii~~iLk~~ 424 (490)
T 3hd6_A 412 MGGIIVGLILRLP 424 (490)
T ss_dssp HHHHHHHHHHTST
T ss_pred HHHHHHHHHHhhc
Confidence 3344444444443
No 18
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=22.55 E-value=93 Score=16.29 Aligned_cols=9 Identities=11% Similarity=0.611 Sum_probs=5.9
Q ss_pred hhcccCChh
Q 012002 169 SLLVTDTPN 177 (473)
Q Consensus 169 ~~~~~e~p~ 177 (473)
..+++|+|+
T Consensus 20 AI~FRePPr 28 (32)
T 3arc_T 20 AIFFREPPR 28 (32)
T ss_dssp HHHTSCCCC
T ss_pred hhhhcCCCC
Confidence 445788874
Done!