BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012003
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1AOZ|A Chain A, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1AOZ|B Chain B, Refined Crystal Structure Of Ascorbate Oxidase At 1.9
Angstroms Resolution
pdb|1ASO|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASO|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASP|A Chain A, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASP|B Chain B, X-ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-forms
pdb|1ASQ|A Chain A, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
pdb|1ASQ|B Chain B, X-Ray Structures And Mechanistic Implications Of Three
Functional Derivatives Of Ascorbate Oxidase From
Zucchini: Reduced-, Peroxide-, And Azide-Forms
Length = 552
Score = 167 bits (423), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 139/474 (29%), Positives = 229/474 (48%), Gaps = 58/474 (12%)
Query: 34 YDWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLD-EPLLLTWNGVQ 92
Y W + Y+ +P ++ V+GINGQFPGP + L E +++ W+G+
Sbjct: 6 YKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGIL 65
Query: 93 HRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNR 151
R W DG + C I G + Y F V D G+FFY L QR+A +
Sbjct: 66 QRGTPWADGTASISQCAINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPP 124
Query: 152 DVIPLPFAVPDGDITIFISDWYTKS-HKKLRKDVENGVD-LGVPDGILINGLGPY----- 204
PF DG+I + +SDW+ +S HK+ + +G P IL+NG G +
Sbjct: 125 QGKKEPFHY-DGEINLLLSDWWHQSIHKQEVGLSSKPIRWIGEPQTILLNGRGQFDCSIA 183
Query: 205 -RYDAAIVPDGI-------PYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETE 256
+YD+ + P + PY + +V P KTYR+R+ + +LNF I NH LL+VE +
Sbjct: 184 AKYDSNLEPCKLKGSESCAPY-IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVVEAD 242
Query: 257 GSYTVQQNYT-NMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHY 315
G+Y VQ YT ++DI+ G+S+S L+TTDQN S +Y++ R + N G+ +L+Y
Sbjct: 243 GNY-VQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR---ARHPNTPPGLTLLNY 298
Query: 316 ---SNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDV 372
S S P S P P A+D + +++++ + ++A P P F +
Sbjct: 299 LPNSVSKLPTSPPPQTP--AWDDF---DRSKNFTYRITAAMGSPKPPVKF--------NR 345
Query: 373 YVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVD- 431
+ L +I G + +N +S P TP + A ++N+ A+ + P ++ +D
Sbjct: 346 RIFLLNTQNVINGYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDT 405
Query: 432 ------TSLINGTYK----GFMEIIFQN------NDTTVQSYHMDGYAFFVVGW 469
T + NG Y+ +++I QN N + +H+ G+ F+V+G+
Sbjct: 406 PPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGY 459
>pdb|4A2F|A Chain A, Coriolopsis Gallica Laccase Collected At 12.65 Kev
Length = 497
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 150/380 (39%), Gaps = 43/380 (11%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TIS SP G +Q I +N FP P++ ++ +L W+
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G +W DG N CPI G + Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V D I ++DWY + K G + D LINGLG R
Sbjct: 127 YDPNDPHASLYDVDDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLG--RSA 177
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
A + D +I V GK YR R+ ++ + F I H+L ++E + +
Sbjct: 178 ATLAAD---LAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDS 234
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGV--AILHYSNSLGPASGP 325
+ I Q +SF++ DQ+ +Y+I A P NS N G AIL Y G
Sbjct: 235 LQIFAAQRYSFVLNADQDV-DNYWIRALP---NSGTQNFAGGTNSAILRY-------DGA 283
Query: 326 LPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEG 385
P P T S N G A P G T V + LN G
Sbjct: 284 APVEPTTSQTP-STNPLVESALTTLKGTAAP--------GSPTPGGVDLALNMAFGFAGG 334
Query: 386 KWRTTLNGISYLPPSTPLML 405
+ T+NG S+ PP+ P++L
Sbjct: 335 NF--TINGASFTPPTVPVLL 352
>pdb|4A2D|A Chain A, Coriolopsis Gallica Laccase T2 Copper Depleted At Ph 4.5
pdb|4A2E|A Chain A, Crystal Structure Of A Coriolopsis Gallica Laccase At 1.7
A Resolution Ph 5.5
pdb|4A2H|A Chain A, Crystal Structure Of Laccase From Coriolopsis Gallica Ph
7.0
pdb|4A2G|A Chain A, Coriolopsis Gallica Laccase Collected At 8.98 Kev
Length = 496
Score = 102 bits (254), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 107/380 (28%), Positives = 150/380 (39%), Gaps = 43/380 (11%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TIS SP G +Q I +N FP P++ ++ +L W+
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G +W DG N CPI G + Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V D I ++DWY + K G + D LINGLG R
Sbjct: 127 YDPNDPHASLYDVDDDSTVITLADWYHLAAKV-------GAPVPTADATLINGLG--RSA 177
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
A + D +I V GK YR R+ ++ + F I H+L ++E + +
Sbjct: 178 ATLAAD---LAVITVTKGKRYRFRLVSLSCDPNYTFSIDGHSLTVIEADSVNLKPHTVDS 234
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGV--AILHYSNSLGPASGP 325
+ I Q +SF++ DQ+ +Y+I A P NS N G AIL Y G
Sbjct: 235 LQIFAAQRYSFVLNADQDV-DNYWIRALP---NSGTQNFAGGTNSAILRY-------DGA 283
Query: 326 LPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEG 385
P P T S N G A P G T V + LN G
Sbjct: 284 APVEPTTSQTP-STNPLVESALTTLKGTAAP--------GSPTPGGVDLALNMAFGFAGG 334
Query: 386 KWRTTLNGISYLPPSTPLML 405
+ T+NG S+ PP+ P++L
Sbjct: 335 NF--TINGASFTPPTVPVLL 352
>pdb|1KYA|A Chain A, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|B Chain B, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|C Chain C, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
pdb|1KYA|D Chain D, Active Laccase From Trametes Versicolor Complexed With
2,5-Xylidine
Length = 499
Score = 99.4 bits (246), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 84/291 (28%), Positives = 128/291 (43%), Gaps = 20/291 (6%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TI+ SP G +Q + +NG PGP++ +L +L W+
Sbjct: 7 DLTITNAAVSPDGFSRQAVVVNGGTPGPLITGNMGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G + +W DG N CPI +G ++ Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQKGTNWADGPAFINQCPISSGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V + D I + DWY + K + LG D LING G R
Sbjct: 127 YDPNDPAADLYDVDNDDTVITLVDWYHVAAK-----LGPAFPLGA-DATLINGKG--RSP 178
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ D +I+V PGK YR R+ ++ + F I HN+ ++ET+ T +
Sbjct: 179 STTTAD---LSVISVTPGKRYRFRLVSLSCDPNYTFSIDGHNMTIIETDSINTAPLVVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318
+ I Q +SF++ +Q A +Y+I A+P F N + AIL Y +
Sbjct: 236 IQIFAAQRYSFVLEANQ-AVDNYWIRANPNFGNVGFTGGINS-AILRYDGA 284
>pdb|2HRG|A Chain A, Crystal Structure Of Blue Laccase From Trametes Trogii
Complexed With P-Methylbenzoate
pdb|2HRH|A Chain A, Crystal Strucure Of Blue Laccase From Trametes Trogii
Length = 496
Score = 99.0 bits (245), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 108/382 (28%), Positives = 154/382 (40%), Gaps = 47/382 (12%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TIS SP G +Q I +N FP P++ ++ +L W+
Sbjct: 7 DLTISNGAVSPDGFSRQAILVNDVFPSPLITGNKGDRFQLNVIDNMTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G +W DG N CPI G + Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQHGTNWADGPAFVNQCPISTGHAFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPIVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ +D + V D I ++DWY + K G + D LINGLG R
Sbjct: 127 YDPQDPHKSLYDVDDDSTVITLADWYHLAAKV-------GSPVPTADATLINGLG--RSI 177
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ D +I V GK YR R+ ++ + F I H+L ++E + Q +
Sbjct: 178 DTLNAD---LAVITVTKGKRYRFRLVSLSCDPNHVFSIDGHSLTVIEADSVNLKPQTVDS 234
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGV--AILHYSNSLGPASGP 325
+ I Q +SF++ DQ+ +Y+I A P NS N GV AIL Y G
Sbjct: 235 IQIFAAQRYSFVLNADQDV-GNYWIRALP---NSGTRNFDGGVNSAILRY-------DGA 283
Query: 326 LPDPPNAYDTYFSMNQARSIRWNVSAGAA--RPNPQGSFKYGQITVTDVYVILNRPAELI 383
P P T + S + AA P P G V + LN
Sbjct: 284 APVEPTTSQTPSTNPLVESALTTLEGTAAPGSPAPGG-----------VDLALNMAFGFA 332
Query: 384 EGKWRTTLNGISYLPPSTPLML 405
GK+ T+NG S+ PP+ P++L
Sbjct: 333 GGKF--TINGASFTPPTVPVLL 352
>pdb|2H5U|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.9a
Resolution
Length = 499
Score = 97.1 bits (240), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 102/382 (26%), Positives = 157/382 (41%), Gaps = 46/382 (12%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TI+ SP G +Q + +NG PGP++ +L +L W+
Sbjct: 7 DNTITNAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G + +W DG N CPI G ++ Y FQV +Q G+F+Y L Q
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V + D TI ++DWY + KL NG D LING G D
Sbjct: 127 YDPNDPHASRYDVDNDDTTITLADWY-HTAAKLGPAFPNGAD-----STLINGKGRAPSD 180
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
++ +++V GK R R+ ++ + F I HN ++ET+ + N +
Sbjct: 181 SSAQ-----LSVVSVTKGKRXRFRLVSLSCDPNFTFSIDGHNNTIIETDSVNSQPLNTDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP 327
+ I Q +SF + +Q A +Y+I A+P F N +N AIL Y + PA P
Sbjct: 236 IQIFAAQRYSFTLNANQ-AVDNYWIRANPNFGNVG-FNGGINSAILRYDGA--PAVEP-- 289
Query: 328 DPPNAYDTYFSMNQARSIR----WNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELI 383
+ NQ+ S + N+ + P P G ++ N I
Sbjct: 290 ----------TTNQSTSTQPLNETNLHPLVSTPVPGSPAAGGVDKAINMAFNFNGSNFFI 339
Query: 384 EGKWRTTLNGISYLPPSTPLML 405
NG S+ PPS P++L
Sbjct: 340 --------NGASFTPPSVPVLL 353
>pdb|3DIV|A Chain A, Crystal Structure Of Laccase From Cerrena Maxima At 1.76a
Resolution
Length = 499
Score = 96.7 bits (239), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 101/382 (26%), Positives = 156/382 (40%), Gaps = 46/382 (12%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TI+ SP G +Q + +NG PGP++ +L +L W+
Sbjct: 7 DNTITDAATSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKTTSVHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G + +W DG N CPI G ++ Y FQV +Q G+F+Y L Q
Sbjct: 67 GFFQQGTNWADGPAFINQCPISPGHSFLYDFQVPNQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V + D I ++DWY + KL G D LING G D
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPAGAD-----ATLINGKGRAPSD 180
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ +I V GK R R+ ++ + F I HNL ++E + S + + +
Sbjct: 181 TSA-----ELSVIKVTKGKRXRFRLVSLSCDPNFTFSIDGHNLTIIEVDSSNSQPLSVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP 327
+ I Q +SF++ +Q A +Y+I A+P F N +N AIL Y + PA P
Sbjct: 236 IQIFAAQRYSFVLNANQ-AVDNYWIRANPNFGNVG-FNGGINSAILRYDGA--PAVEP-- 289
Query: 328 DPPNAYDTYFSMNQARSIR----WNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELI 383
+ NQ S++ N+ + P P G ++ N I
Sbjct: 290 ----------TTNQTTSVKPLNEVNLHPLVSTPVPGSPSSGGVDKAINMAFNFNGSNFFI 339
Query: 384 EGKWRTTLNGISYLPPSTPLML 405
NG S++PPS P++L
Sbjct: 340 --------NGASFVPPSVPVLL 353
>pdb|1A65|A Chain A, Type-2 Cu-depleted Laccase From Coprinus Cinereus
Length = 504
Score = 96.3 bits (238), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 174/450 (38%), Gaps = 70/450 (15%)
Query: 37 TISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WNGV 91
T++ SP G + I +NG GP++ DLD P +L W+G+
Sbjct: 10 TLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGL 68
Query: 92 QHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXXXN 149
R +W DG G N CPI G + Y+F G+F+Y Q +
Sbjct: 69 FQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYD 128
Query: 150 NRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAA 209
+ D + D + I ++DWY ++ + PD LING G Y A
Sbjct: 129 DNDPHAALYDEDDENTIITLADWYHIPAPSIQGAAQ-------PDATLINGKGRYVGGPA 181
Query: 210 IVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMD 269
++NVE GK YR+R+ ++ + F I H L ++E +G T +
Sbjct: 182 A-----ELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQ 236
Query: 270 IHVGQSFSFLVTTDQNASSDYYIVASP-RFVNSSEWNKVTGV--AILHYSNSLG--PASG 324
I GQ +SF++ +Q +Y+I A P + N GV AIL Y+ + P +
Sbjct: 237 IFTGQRYSFVLDANQ-PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTS 295
Query: 325 PLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIE 384
P+P +N+A A P P + DV N +L
Sbjct: 296 ANPNPA-------QLNEADLHALIDPAAPGIPTPGAA---------DV----NLRFQLGF 335
Query: 385 GKWRTTLNGISYLPPSTPLML-----AQQFN--IPGAYKLDFPYKLMSRAPKVDTSLING 437
R T+NG +Y PS P +L AQ N +P + P R V+ + G
Sbjct: 336 SGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELP-----RNQVVELVVPAG 390
Query: 438 TYKGFMEIIFQNNDTTVQSYHMDGYAFFVV 467
G +H+ G+AF VV
Sbjct: 391 VLGG------------PHPFHLHGHAFSVV 408
>pdb|1HFU|A Chain A, Type-2 Cu-Depleted Laccase From Coprinus Cinereus At 1.68
A Resolution
Length = 503
Score = 96.3 bits (238), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 115/450 (25%), Positives = 174/450 (38%), Gaps = 70/450 (15%)
Query: 37 TISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WNGV 91
T++ SP G + I +NG GP++ DLD P +L W+G+
Sbjct: 10 TLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGL 68
Query: 92 QHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXXXN 149
R +W DG G N CPI G + Y+F G+F+Y Q +
Sbjct: 69 FQRGTNWADGADGVNQCPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYD 128
Query: 150 NRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAA 209
+ D + D + I ++DWY ++ + PD LING G Y A
Sbjct: 129 DNDPHAALYDEDDENTIITLADWYHIPAPSIQGAAQ-------PDATLINGKGRYVGGPA 181
Query: 210 IVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMD 269
++NVE GK YR+R+ ++ + F I H L ++E +G T +
Sbjct: 182 A-----ELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTVDRLQ 236
Query: 270 IHVGQSFSFLVTTDQNASSDYYIVASP-RFVNSSEWNKVTGV--AILHYSNSLG--PASG 324
I GQ +SF++ +Q +Y+I A P + N GV AIL Y+ + P +
Sbjct: 237 IFTGQRYSFVLDANQ-PVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTS 295
Query: 325 PLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIE 384
P+P +N+A A P P + DV N +L
Sbjct: 296 ANPNPA-------QLNEADLHALIDPAAPGIPTPGAA---------DV----NLRFQLGF 335
Query: 385 GKWRTTLNGISYLPPSTPLML-----AQQFN--IPGAYKLDFPYKLMSRAPKVDTSLING 437
R T+NG +Y PS P +L AQ N +P + P R V+ + G
Sbjct: 336 SGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELP-----RNQVVELVVPAG 390
Query: 438 TYKGFMEIIFQNNDTTVQSYHMDGYAFFVV 467
G +H+ G+AF VV
Sbjct: 391 VLGG------------PHPFHLHGHAFSVV 408
>pdb|3PXL|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta
Length = 499
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 155/382 (40%), Gaps = 46/382 (12%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TI+ SP G +Q + +NG PGP++ +L +L W+
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G +W DG N CPI G ++ Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V + D I ++DWY + KL G D LING G D
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPGGAD-----ATLINGKGRAPSD 180
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ +I V GK YR R+ ++ + + F I HNL ++E + + +
Sbjct: 181 SVA-----ELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP 327
+ I Q +SF++ +Q A +Y+I A+P F N ++ AIL Y + PA P
Sbjct: 236 IQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVG-FDGGINSAILRYDGA--PAVEP-- 289
Query: 328 DPPNAYDTYFSMNQARSIR----WNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELI 383
+ NQ S++ ++ + P P G ++ N I
Sbjct: 290 ----------TTNQTTSVKPLNEVDLHPLVSTPVPGAPSSGGVDKAINMAFNFNGSNFFI 339
Query: 384 EGKWRTTLNGISYLPPSTPLML 405
NG S++PP+ P++L
Sbjct: 340 --------NGASFVPPTVPVLL 353
>pdb|3FPX|A Chain A, Native Fungus Laccase From Trametes Hirsuta
pdb|3V9C|A Chain A, Type-2 Cu-Depleted Fungus Laccase From Trametes Hirsuta At
Low Dose Of Ionization Radiation
Length = 499
Score = 95.5 bits (236), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 99/382 (25%), Positives = 155/382 (40%), Gaps = 46/382 (12%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TI+ SP G +Q + +NG PGP++ +L +L W+
Sbjct: 7 DLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G +W DG N CPI G ++ Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQHGTNWADGPAFINQCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V + D I ++DWY + KL G D LING G D
Sbjct: 127 YDPNDPHASRYDVDNDDTVITLADWY-HTAAKLGPRFPGGAD-----ATLINGKGRAPSD 180
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ +I V GK YR R+ ++ + + F I HNL ++E + + +
Sbjct: 181 SVA-----ELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLEVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP 327
+ I Q +SF++ +Q A +Y+I A+P F N ++ AIL Y + PA P
Sbjct: 236 IQIFAAQRYSFVLDANQ-AVDNYWIRANPNFGNVG-FDGGINSAILRYDGA--PAVEP-- 289
Query: 328 DPPNAYDTYFSMNQARSIR----WNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELI 383
+ NQ S++ ++ + P P G ++ N I
Sbjct: 290 ----------TTNQTTSVKPLNEVDLHPLVSTPVPGSPSSGGVDKAINMAFNFNGSNFFI 339
Query: 384 EGKWRTTLNGISYLPPSTPLML 405
NG S++PP+ P++L
Sbjct: 340 --------NGASFVPPTVPVLL 353
>pdb|3KW7|A Chain A, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
pdb|3KW7|B Chain B, Crystal Structure Of Lacb From Trametes Sp. Ah28-2
Length = 502
Score = 92.0 bits (227), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 82/293 (27%), Positives = 124/293 (42%), Gaps = 24/293 (8%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D TIS +P G + + NG FPGP++ +L +L W+
Sbjct: 7 DLTISNADVTPDGFTRAAVVANGVFPGPLITGNKGDNFQINVIDNLTNATMLKTTTIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G+ +W DG N CPI +G ++ Y F V DQ G+F+Y L Q
Sbjct: 67 GLFQHGTNWADGPAFVNQCPIASGNSFLYDFTVPDQAGTFWYHSHLSTQYCDGLRGPLVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V D I +SDWY + K N D +LINGLG R+
Sbjct: 127 YDPSDPYASMYDVDDDTTVITLSDWYHTAAKLGPAFPPNA------DSVLINGLG--RFA 178
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
D +I VE K YR R+ ++ + F I HN+ ++E +G +
Sbjct: 179 GGNASD---LAVITVEQNKRYRFRLVSLSCDPNFTFSIDGHNMTIIEVDGVNHEPLEVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGV--AILHYSNS 318
+ I Q +SF++ Q+ +Y+I A P N+ + G+ AIL YS +
Sbjct: 236 IQIFASQRYSFVLNATQSV-DNYWIRAIP---NTGTIDTTGGLNSAILRYSGA 284
>pdb|3T6V|A Chain A, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|B Chain B, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6V|C Chain C, Crystal Structure Of Laccase From Steccherinum Ochraceum
pdb|3T6W|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6W|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (10% Dose)
pdb|3T6X|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6X|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (20% Dose)
pdb|3T6Z|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T6Z|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (60% Dose)
pdb|3T71|A Chain A, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|B Chain B, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
pdb|3T71|C Chain C, Crystal Structure Of Steccherinum Ochraceum Laccase
Obtained By Multi- Crystals Composite Data Collection
Technique (90% Dose)
Length = 495
Score = 88.6 bits (218), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 91/369 (24%), Positives = 149/369 (40%), Gaps = 37/369 (10%)
Query: 45 PLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WNGVQHRKNSWQ 99
P G + + G FPGP++ L E +L W+G + +W
Sbjct: 18 PDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWA 77
Query: 100 DG-VLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXXXNNRDVIPLP 157
DG T CPI G +++Y F V G+++Y L Q + D
Sbjct: 78 DGPAFITQCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANL 137
Query: 158 FAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPY 217
+ V D I ++DWY L K++ G + D LI+GLG + A VP
Sbjct: 138 YDVDDDTTIITLADWY----HVLAKEMGAGGAI-TADSTLIDGLGRTHVNVAAVP----L 188
Query: 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFS 277
+I VE GK YR+R+ ++ + +F I H++ ++ET+G + + + I Q +S
Sbjct: 189 SVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELTVDEIQIFAAQRYS 248
Query: 278 FLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYF 337
F++ +Q +Y+I A+P ++ AIL Y + DP T
Sbjct: 249 FVLNANQPV-GNYWIRANPN-SGGEGFDGGINSAILRYDGAT------TADPVTVASTVH 300
Query: 338 SMNQARSIRWNVSAGAARPNP-QGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISY 396
+ + +S NP QG LN G + +NG+S+
Sbjct: 301 TKCLIETDLHPLSRNGVPGNPHQGGADCN----------LNLSLGFACGNF--VINGVSF 348
Query: 397 LPPSTPLML 405
PP+ P++L
Sbjct: 349 TPPTVPVLL 357
>pdb|2XYB|A Chain A, Crystal Structure Of A Fully Functional Laccase From The
Ligninolytic Fungus Pycnoporus Cinnabarinus
Length = 497
Score = 87.8 bits (216), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 123/291 (42%), Gaps = 20/291 (6%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D T++ SP G ++ + +NG P P++ L +L W+
Sbjct: 7 DLTLTNAQVSPDGFAREAVVVNGITPAPLITGNKGDRFQLNVIDQLTNHTMLKTSSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G + +W DG N CPI +G ++ Y FQV DQ G+F+Y L Q
Sbjct: 67 GFFQQGTNWADGPAFVNQCPIASGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + + + D I ++DWY + KL G D LINGLG
Sbjct: 127 YDPNDPHASLYDIDNDDTVITLADWYHVA-AKLGPRFPFGSD-----STLINGLG---RT 177
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
I P + +I V GK YR R+ ++ + F I NH + ++E + T +
Sbjct: 178 TGIAPSDL--AVIKVTQGKRYRFRLVSLSCDPNHTFSIDNHTMTIIEADSINTQPLEVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318
+ I Q +SF++ Q +Y+I A+P F N+ + AIL Y +
Sbjct: 236 IQIFAAQRYSFVLDASQPV-DNYWIRANPAFGNTGFAGGINS-AILRYDGA 284
>pdb|1GYC|A Chain A, Crystal Structure Determination At Room Temperature Of A
Laccase From Trametes Versicolor In Its Oxidised Form
Containing A Full Complement Of Copper Ions
Length = 499
Score = 87.4 bits (215), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 75/268 (27%), Positives = 115/268 (42%), Gaps = 19/268 (7%)
Query: 38 ISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WNGVQ 92
++ SP G + I +NG FP P++ L +L W+G
Sbjct: 10 VANAPVSPDGFLRDAIVVNGVFPSPLITGKKGDRFQLNVVDTLTNHTMLKSTSIHWHGFF 69
Query: 93 HRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXXXNN 150
+W DG N CPI +G ++ Y F V DQ G+F+Y L Q +
Sbjct: 70 QAGTNWADGPAFVNQCPIASGHSFLYDFHVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDP 129
Query: 151 RDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAI 210
+D + V + I ++DWY H R LG D LINGLG +A
Sbjct: 130 KDPHASRYDVDNESTVITLTDWY---HTAARLGPR--FPLGA-DATLINGLG----RSAS 179
Query: 211 VPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDI 270
P +INV+ GK YR R+ ++ + F I HNL ++E +G + ++ I
Sbjct: 180 TPTAA-LAVINVQHGKRYRFRLVSISCDPNYTFSIDGHNLTVIEVDGINSQPLLVDSIQI 238
Query: 271 HVGQSFSFLVTTDQNASSDYYIVASPRF 298
Q +SF++ +Q +Y+I A+P F
Sbjct: 239 FAAQRYSFVLNANQTV-GNYWIRANPNF 265
>pdb|2QT6|A Chain A, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
pdb|2QT6|B Chain B, Crystal Structure Determination Of A Blue Laccase From
Lentinus Tigrinus
Length = 498
Score = 86.7 bits (213), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 78/291 (26%), Positives = 125/291 (42%), Gaps = 20/291 (6%)
Query: 35 DWTISYVTASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WN 89
D T++ P G ++ I +N FP P++ + +L W+
Sbjct: 7 DLTVTNANIVPDGFERAAIVVNNVFPAPLITGNMGDNFQLNLVNQMTNHTMLKTTSIHWH 66
Query: 90 GVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXX 147
G + +W DG N CPI +G ++ Y FQV Q G+F+Y L Q
Sbjct: 67 GFFQKGTNWADGPAFINQCPIASGNSFLYDFQVPGQAGTFWYHSHLSTQYCDGLRGPFVV 126
Query: 148 XNNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYD 207
+ D + V D I ++DWY + KL G D LINGLG R
Sbjct: 127 YDPNDPHANLYDVDDESTVITLADWYHVA-AKLGPRFPKGAD-----STLINGLG--RST 178
Query: 208 AAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267
+ D +I+V GK YR R+ ++ + F I +H L ++E +G T +
Sbjct: 179 STPTAD---LAVISVTKGKRYRFRLVSLSCDPNYTFSIDSHQLTVIEADGVSTQPVTVDS 235
Query: 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318
+ I Q +SF++ +Q+ +Y+I A+P F + + V AIL Y ++
Sbjct: 236 IQIFAAQRYSFVLNANQDV-DNYWIRANPNFGTTGFADGVNS-AILRYDDA 284
>pdb|3V9E|A Chain A, Structure Of The L513m Mutant Of The Laccase From B.aclada
Length = 580
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 24/288 (8%)
Query: 42 TASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDE-PLLLTWNGVQHRKNSWQD 100
T +P G + + NG PGP + +L+ + W+G++ + D
Sbjct: 78 TITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYD 137
Query: 101 GVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNRDVIPLPFA 159
GV G T CPI G TY+FQV Q G+ +Y Q N A
Sbjct: 138 GVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPAT-----A 191
Query: 160 VPDGDI-TIFISDWYTKSHKKLRKDVENGVDLGVP---DGILINGLGPYRYDAAIVPD-- 213
D D+ IF+ DW +H+ + + + + LG P + L+NG + A+ P+
Sbjct: 192 DYDEDVGVIFLQDW---AHESVFE-IWDTARLGAPPALENTLMNGTNTFDCSASTDPNCV 247
Query: 214 --GIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIH 271
G ++L VE G YRLR+ NVGI + F I NH L ++ + V + I
Sbjct: 248 GGGKKFELTFVE-GTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIG 306
Query: 272 VGQSFSFLVTTDQNASSD-YYIVASPRFVNSSEWNKVTGVAILHYSNS 318
+GQ + +V + NA++D Y+I + S+ IL Y +S
Sbjct: 307 IGQRYDVIV--EANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSS 352
>pdb|3SQR|A Chain A, Crystal Structure Of Laccase From Botrytis Aclada At 1.67
A Resolution
Length = 580
Score = 75.9 bits (185), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 79/288 (27%), Positives = 124/288 (43%), Gaps = 24/288 (8%)
Query: 42 TASPLGDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDE-PLLLTWNGVQHRKNSWQD 100
T +P G + + NG PGP + +L+ + W+G++ + D
Sbjct: 78 TITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYD 137
Query: 101 GVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNRDVIPLPFA 159
GV G T CPI G TY+FQV Q G+ +Y Q N A
Sbjct: 138 GVPGVTQCPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPAT-----A 191
Query: 160 VPDGDI-TIFISDWYTKSHKKLRKDVENGVDLGVP---DGILINGLGPYRYDAAIVPD-- 213
D D+ IF+ DW +H+ + + + + LG P + L+NG + A+ P+
Sbjct: 192 DYDEDVGVIFLQDW---AHESVFE-IWDTARLGAPPALENTLMNGTNTFDCSASTDPNCV 247
Query: 214 --GIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIH 271
G ++L VE G YRLR+ NVGI + F I NH L ++ + V + I
Sbjct: 248 GGGKKFELTFVE-GTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVPYTTDTLLIG 306
Query: 272 VGQSFSFLVTTDQNASSD-YYIVASPRFVNSSEWNKVTGVAILHYSNS 318
+GQ + +V + NA++D Y+I + S+ IL Y +S
Sbjct: 307 IGQRYDVIV--EANAAADNYWIRGNWGTTCSTNNEAANATGILRYDSS 352
>pdb|2HZH|A Chain A, Crystal Structure Of Laccase From Coriolus Zonatus At 2.6
A Resolution
Length = 499
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/280 (25%), Positives = 117/280 (41%), Gaps = 22/280 (7%)
Query: 47 GDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLT-----WNGVQHRKNSWQDG 101
G + + +NG PGP++ +L +L W+G + +W DG
Sbjct: 19 GHSRDAVVVNGGTPGPLITGNKGDQFQLNVINNLTNFTMLKSTSVHWHGFFQKGTNWADG 78
Query: 102 VLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA-AXXXXXXXXNNRDVIPLPFA 159
N CPI AG ++ Y F Q G+F+Y L Q + D +
Sbjct: 79 PAFVNQCPIAAGSSFLYDFSTPIQAGTFWYHSHLSTQYCDGDRGPFVVYDPNDPSANLYD 138
Query: 160 VPDGDITIFISDWYTKSHKKLRKDVENG-VDLGVPDGILINGLGPYRYDAAIVPDGIPYQ 218
V + + I ++DWY + +NG G D LING G R ++ D
Sbjct: 139 VDNLNTVITLTDWYHTA-------AQNGPAKPGGADATLINGQG--RGPSSPSAD---LA 186
Query: 219 LINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSF 278
+I+V GK YR R+ + + F I H + +++ + + I+ Q +SF
Sbjct: 187 VISVTAGKRYRFRLVSNSCDPNYTFSIDGHQMTIIQVDSINVQPLVVLKIQIYAAQRYSF 246
Query: 279 LVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318
++ +Q A ++Y+I A+P N N + AIL YS +
Sbjct: 247 ILNANQ-AVNNYWIRANPNQGNVGFTNGINS-AILRYSGA 284
>pdb|1V10|A Chain A, Structure Of Rigidoporus Lignosus Laccase From
Hemihedrally Twinned Crystals
Length = 521
Score = 67.4 bits (163), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/325 (24%), Positives = 132/325 (40%), Gaps = 33/325 (10%)
Query: 86 LTWNGVQHRKNSWQDGVLGTN-CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXX 144
+ W+G + DG N CPI ++ Y F V Q G+++Y L Q
Sbjct: 84 IHWHGFFQAGTTEMDGPAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRG 143
Query: 145 XXXXNNRDVIPLP-FAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGP 203
+ + L + V D I I+DWY L + PD LINGLG
Sbjct: 144 AFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTVLFPNPN--KAPPAPDTTLINGLGR 201
Query: 204 YRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQ 263
+ P +++V+ GK YR R+ + + F I H + ++E +G
Sbjct: 202 NSAN----PSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVSHQPL 257
Query: 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTG---VAILHYSNSLG 320
++ I GQ +S +V +Q A +Y+I A+P S+ N TG AI Y +
Sbjct: 258 TVDSLTIFAGQRYSVVVEANQ-AVGNYWIRANP----SNGRNGFTGGINSAIFRYQGAA- 311
Query: 321 PASGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPA 380
+ +P + ++ ++N+A I P P G+ D+ + L
Sbjct: 312 -----VAEPTTSQNSGTALNEANLIPLINPGAPGNPVPGGA---------DINLNLRIGR 357
Query: 381 ELIEGKWRTTLNGISYLPPSTPLML 405
+ T+NG ++PP+ P++L
Sbjct: 358 NATTADF--TINGAPFIPPTVPVLL 380
>pdb|1ZPU|A Chain A, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|B Chain B, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|C Chain C, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|D Chain D, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|E Chain E, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
pdb|1ZPU|F Chain F, Crystal Structure Of Fet3p, A Multicopper Oxidase That
Functions In Iron Import
Length = 534
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 97/448 (21%), Positives = 175/448 (39%), Gaps = 68/448 (15%)
Query: 34 YDWTISYVTASPLGDKQQ-VIGINGQFPGPILXXXXXXXXXXXXXXDLDEP-LLLTWNGV 91
++WT + + G K + VI NGQFP P + ++ + ++G+
Sbjct: 5 FNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGL 64
Query: 92 QHRKNSWQDGV-LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNN 150
+ DGV T CPI G Y F V +G+++Y D Q +
Sbjct: 65 FQNGTASMDGVPFLTQCPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKD 124
Query: 151 RDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVEN-----GVDLGVPDGILINGLGPYR 205
D P + D ++++ +S+WY L K + G + +P +++N
Sbjct: 125 -DSFPYDY---DEELSLSLSEWYHDLVTDLTKSFMSVYNPTGAE-PIPQNLIVNNTMNLT 179
Query: 206 YDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNY 265
++ V+P TY LR+ NVG S F I++H + +VE +G T ++N
Sbjct: 180 WE--------------VQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDG-ITTEKNV 224
Query: 266 TNM-DIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASG 324
T+M I V Q ++ LV T + ++ I+ +F ++ + + + S + +
Sbjct: 225 TDMLYITVAQRYTVLVHTKNDTDKNFAIMQ--KFDDTMLDVIPSDLQLNATSYMVYNKTA 282
Query: 325 PLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIE 384
LP + N SI + +P + + V V V+++ L
Sbjct: 283 ALP----------TQNYVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVVMDN---LKN 329
Query: 385 GKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGT------ 438
G N I+Y P P ++ ++S + + S I G+
Sbjct: 330 GVNYAFFNNITYTAPKVPTLMT----------------VLSSGDQANNSEIYGSNTHTFI 373
Query: 439 --YKGFMEIIFQNNDTTVQSYHMDGYAF 464
+EI+ N DT +H+ G+AF
Sbjct: 374 LEKDEIVEIVLNNQDTGTHPFHLHGHAF 401
>pdb|3DKH|A Chain A, L559a Mutant Of Melanocarpus Albomyces Laccase
pdb|3DKH|B Chain B, L559a Mutant Of Melanocarpus Albomyces Laccase
Length = 559
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 49 KQQVIGINGQFPGPILXXXXXXXXXXXXXXDL-DEPLLLTWNGVQHRKNSWQDGVLG-TN 106
K++V+ ING GP + +L + W+G+ + + DG G T
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 107 CPIP-AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNRDVIPLPFAVPDGDI 165
CPIP G TY+++ + Q G+ +Y Q N +P D D+
Sbjct: 114 CPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DIDL 167
Query: 166 TIF-ISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVE- 223
+F I+D+Y ++ L +N D +LING A+ P+ Q NV
Sbjct: 168 GVFPITDYYYRAADDLVHFTQNNAP-PFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 224 -PGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282
PGK +RLR+ N + NH + ++ + ++ + VGQ + ++
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVI-- 277
Query: 283 DQNASSDYY 291
D + + D Y
Sbjct: 278 DASRAPDNY 286
>pdb|1GW0|A Chain A, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|1GW0|B Chain B, Crystal Structure Of Laccase From Melanocarpus Albomyces
In Four Copper Form
pdb|2IH8|A Chain A, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH8|B Chain B, A Low-dose Crystal Structure Of A Recombinant Melanocarpus
Albomyces Laccase
pdb|2IH9|A Chain A, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|2IH9|B Chain B, A High-Dose Crystal Structure Of A Recombinant
Melanocarbus Albomyces Laccase
pdb|3FU7|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU9|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3FU9|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (20 Min)
With 2,6- Dimethoxyphenol
pdb|3QPK|A Chain A, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
pdb|3QPK|B Chain B, Probing Oxygen Channels In Melanocarpus Albomyces Laccase
Length = 559
Score = 56.2 bits (134), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 49 KQQVIGINGQFPGPILXXXXXXXXXXXXXXDL-DEPLLLTWNGVQHRKNSWQDGVLG-TN 106
K++V+ ING GP + +L + W+G+ + + DG G T
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIHQKDTNLHDGANGVTE 113
Query: 107 CPIP-AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNRDVIPLPFAVPDGDI 165
CPIP G TY+++ + Q G+ +Y Q N +P D D+
Sbjct: 114 CPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DIDL 167
Query: 166 TIF-ISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVE- 223
+F I+D+Y ++ L +N D +LING A+ P+ Q NV
Sbjct: 168 GVFPITDYYYRAADDLVHFTQNNAP-PFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 224 -PGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282
PGK +RLR+ N + NH + ++ + ++ + VGQ + ++
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVI-- 277
Query: 283 DQNASSDYY 291
D + + D Y
Sbjct: 278 DASRAPDNY 286
>pdb|2Q9O|A Chain A, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|2Q9O|B Chain B, Near-Atomic Resolution Structure Of A Melanocarpus
Albomyces Laccase
pdb|3FU7|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (4 Sec) With
2,6- Dimethoxyphenol
pdb|3FU8|A Chain A, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
pdb|3FU8|B Chain B, Melanocarpus Albomyces Laccase Crystal Soaked (10 Sec)
With 2,6- Dimethoxyphenol
Length = 559
Score = 55.8 bits (133), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 60/249 (24%), Positives = 102/249 (40%), Gaps = 22/249 (8%)
Query: 49 KQQVIGINGQFPGPILXXXXXXXXXXXXXXDL-DEPLLLTWNGVQHRKNSWQDGVLG-TN 106
K++V+ ING GP + +L + W+G+ + + DG G T
Sbjct: 54 KEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGANGVTE 113
Query: 107 CPIP-AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXXXXXXXNNRDVIPLPFAVPDGDI 165
CPIP G TY+++ + Q G+ +Y Q N +P D D+
Sbjct: 114 CPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPASLPY-----DIDL 167
Query: 166 TIF-ISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVE- 223
+F I+D+Y ++ L +N D +LING A+ P+ Q NV
Sbjct: 168 GVFPITDYYYRAADDLVHFTQNNAP-PFSDNVLING-------TAVNPNTGEGQYANVTL 219
Query: 224 -PGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282
PGK +RLR+ N + NH + ++ + ++ + VGQ + ++
Sbjct: 220 TPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPVNAMTVDSLFLAVGQRYDVVI-- 277
Query: 283 DQNASSDYY 291
D + + D Y
Sbjct: 278 DASRAPDNY 286
>pdb|3PPS|A Chain A, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|B Chain B, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|C Chain C, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
pdb|3PPS|D Chain D, Crystal Structure Of An Ascomycete Fungal Laccase From
Thielavia Arenaria
Length = 604
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 54/211 (25%), Positives = 90/211 (42%), Gaps = 21/211 (9%)
Query: 86 LTWNGVQHRKNSWQDGVLG-TNCPIP-AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAXXX 143
+ W+G++ N + DG G T CPIP G TY+F+ Q G+ +Y Q
Sbjct: 133 MHWHGLRQLGNVFNDGANGVTECPIPPKGGRKTYKFRAT-QYGTSWYHSHFSAQYGNGVV 191
Query: 144 XXXXXNNRDVIPLPFAVPDGDITIF-ISDWYTKSHKKLRKDVENGVDLGVP--DGILING 200
+ +P D D+ +F + D+Y +S +L ++ G P D +L NG
Sbjct: 192 GTIQIDGPASLPY-----DIDLGVFPLMDYYYRSADELVHFTQSN---GAPPSDNVLFNG 243
Query: 201 LGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT 260
+ A G Y + + PGK +RLR+ N + HN+ ++ T+
Sbjct: 244 TARHPETGA----GQWYN-VTLTPGKRHRLRIINTSTDNHFQVSLVGHNMTVIATDMVPV 298
Query: 261 VQQNYTNMDIHVGQSFSFLVTTDQNASSDYY 291
+++ + VGQ + VT D N+ Y
Sbjct: 299 NAFTVSSLFLAVGQRYD--VTIDANSPVGNY 327
>pdb|2XU9|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27
pdb|2XUW|A Chain A, Crystal Structure Of Apolaccase From Thermus Thermophilus
Hb27
pdb|2XVB|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 5 Min. In 5 Mm Hgcl2 At 278 K.
pdb|4AI7|A Chain A, Crystal Structure Of Laccase From Thermus Thermophilus
Hb27 Complexed With Hg, Crystal Of The Apoenzyme Soaked
For 2 H In 5 Mm Hgcl2 At 278 K.
pdb|2YAE|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27(0.0-12.5 Percent Dose)
pdb|2YAF|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (12.5-25.0 Percent Dose)
pdb|2YAH|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (25.0-37.5 Percent Dose)
pdb|2YAM|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (37.5-50.0 Percent Dose)
pdb|2YAO|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (50.0-62.5 Percent Dose)
pdb|2YAP|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (62.5-75.0 Percent Dose)
pdb|2YAQ|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (75.0-87.5 Percent Dose)
pdb|2YAR|A Chain A, X-Ray Induced Reduction Of Laccase From Thermus
Thermophilus Hb27 (87.5-100.0 Percent Dose)
Length = 439
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 42/98 (42%), Gaps = 9/98 (9%)
Query: 41 VTASPL---GDKQQVIGINGQFPGPILXXXXXXXXXXXXXXDLDEPLLLTWNGVQHRKNS 97
T +PL G + ++ G FPGP L L EP L W+G+
Sbjct: 23 ATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGL-----P 77
Query: 98 WQDGVLGTNCPIPAGWNWTYQFQV-KDQIGSFFYFPSL 134
V IP G +WTY+F V K+ G+F+Y P L
Sbjct: 78 ISPKVDDPFLEIPPGESWTYEFTVPKELAGTFWYHPHL 115
>pdb|4IAO|A Chain A, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
pdb|4IAO|B Chain B, Crystal Structure Of Sir2 C543s Mutant In Complex With Sid
Domain Of Sir4
Length = 492
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Query: 158 FAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPY 217
+ V DIT F K HK +R+D+ DL + G + + P +VP +P
Sbjct: 365 YGVLKPDITFFGEALPNKFHKSIREDILE-CDLLICIGTSLK-VAPVSEIVNMVPSHVPQ 422
Query: 218 QLINVEPGK 226
LIN +P K
Sbjct: 423 VLINRDPVK 431
>pdb|2M1Z|A Chain A, Solution Structure Of Uncharacterized Protein Lmo0427
Length = 106
Score = 29.3 bits (64), Expect = 4.4, Method: Composition-based stats.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 249 NLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282
NL+ VET+G+ ++ T D+++G+ F V T
Sbjct: 34 NLIKVETQGATGIENELTEKDVNIGEVVIFAVDT 67
>pdb|1D8H|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8H|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With Sulfate And Manganese Ions.
pdb|1D8I|A Chain A, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|B Chain B, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion.
pdb|1D8I|C Chain C, X-Ray Crystal Structure Of Yeast Rna Triphosphatase In
Complex With A Sulfate Ion
Length = 311
Score = 29.3 bits (64), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 160 VPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYR 205
+PD D+T + DW + + ++ + ++L + G++I+ GP R
Sbjct: 38 IPDDDLTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDR 83
>pdb|3KYH|A Chain A, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
pdb|3KYH|B Chain B, Saccharomyces Cerevisiae Cet1-Ceg1 Capping Apparatus
Length = 310
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 26/46 (56%)
Query: 160 VPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYR 205
+PD D+T + DW + + ++ + ++L + G++I+ GP R
Sbjct: 37 IPDDDLTKSVQDWVYATIYSIAPELRSFIELEMKFGVIIDAKGPDR 82
>pdb|3ZYV|A Chain A, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|B Chain B, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|C Chain C, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
pdb|3ZYV|D Chain D, Crystal Structure Of The Mouse Liver Aldehyde Oxydase 3
(Maox3)
Length = 1335
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 9/56 (16%)
Query: 171 DWYTKSHKKLRKDV--------ENGVDLGVPDGILINGLGPYRYDA-AIVPDGIPY 217
D T +HK +R D+ VD+G +G + GLG Y + P+G+ Y
Sbjct: 1170 DCLTGAHKNIRTDIVMDGSFSINPAVDIGQIEGAFVQGLGLYTLEELKYSPEGVLY 1225
>pdb|2VVN|A Chain A, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVN|B Chain B, Btgh84 In Complex With Nh-Butylthiazoline
pdb|2VVS|A Chain A, Btgh84 Structure In Complex With Pugnac
pdb|2X0H|A Chain A, Btgh84 Michaelis Complex
pdb|2X0H|B Chain B, Btgh84 Michaelis Complex
pdb|4AIS|A Chain A, A Complex Structure Of Btgh84
pdb|4AIS|B Chain B, A Complex Structure Of Btgh84
Length = 737
Score = 28.5 bits (62), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 389 TTLNGISYLPPSTPLMLAQQ-FNIPGAYKLDFPYKLMSRAPKVDTSLING---TYKGFME 444
T +S PP L++ + ++P Y+L+ + A KV L++G + KG +
Sbjct: 19 TFAQNVSLQPPPQQLIVQNKTIDLPAVYQLNGGEEANPHAVKVLKELLSGKQSSKKGMLI 78
Query: 445 IIFQNNDTTVQSY------HMDGYAFFV 466
I + D +V+ Y H +GY V
Sbjct: 79 SIGEKGDKSVRKYSRQIPDHKEGYYLSV 106
>pdb|2WZI|A Chain A, Btgh84 D243n In Complex With 5f-Oxazoline
pdb|2WZI|B Chain B, Btgh84 D243n In Complex With 5f-Oxazoline
Length = 737
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 389 TTLNGISYLPPSTPLMLAQQ-FNIPGAYKLDFPYKLMSRAPKVDTSLING---TYKGFME 444
T +S PP L++ + ++P Y+L+ + A KV L++G + KG +
Sbjct: 19 TFAQNVSLQPPPQQLIVQNKTIDLPAVYQLNGGEEANPHAVKVLKELLSGKQSSKKGMLI 78
Query: 445 IIFQNNDTTVQSY------HMDGYAFFV 466
I + D +V+ Y H +GY V
Sbjct: 79 SIGEKGDKSVRKYSRQIPDHKEGYYLSV 106
>pdb|2WZH|A Chain A, Btgh84 D242n In Complex With Meumb-Derived Oxazoline
pdb|4AIU|A Chain A, A Complex Structure Of Btgh84
Length = 737
Score = 28.5 bits (62), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 10/88 (11%)
Query: 389 TTLNGISYLPPSTPLMLAQQ-FNIPGAYKLDFPYKLMSRAPKVDTSLING---TYKGFME 444
T +S PP L++ + ++P Y+L+ + A KV L++G + KG +
Sbjct: 19 TFAQNVSLQPPPQQLIVQNKTIDLPAVYQLNGGEEANPHAVKVLKELLSGKQSSKKGMLI 78
Query: 445 IIFQNNDTTVQSY------HMDGYAFFV 466
I + D +V+ Y H +GY V
Sbjct: 79 SIGEKGDKSVRKYSRQIPDHKEGYYLSV 106
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.139 0.442
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,263,135
Number of Sequences: 62578
Number of extensions: 672470
Number of successful extensions: 1480
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1385
Number of HSP's gapped (non-prelim): 47
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)