Query 012003
Match_columns 473
No_of_seqs 222 out of 2138
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 07:35:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012003.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012003hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02991 oxidoreductase 100.0 2.2E-93 4.8E-98 743.0 51.9 440 12-472 9-449 (543)
2 PLN00044 multi-copper oxidase- 100.0 2.4E-93 5.1E-98 746.7 52.2 448 25-472 21-472 (596)
3 PLN02835 oxidoreductase 100.0 8.6E-92 1.9E-96 734.6 51.5 445 7-472 5-450 (539)
4 PLN02354 copper ion binding / 100.0 2.1E-91 4.5E-96 732.6 51.2 432 26-472 22-457 (552)
5 PLN02792 oxidoreductase 100.0 1.5E-90 3.3E-95 722.8 51.1 429 26-472 11-442 (536)
6 PLN02168 copper ion binding / 100.0 2.3E-90 5E-95 721.7 52.1 428 28-472 23-454 (545)
7 KOG1263 Multicopper oxidases [ 100.0 9.8E-85 2.1E-89 674.4 49.6 450 13-472 10-472 (563)
8 TIGR03389 laccase laccase, pla 100.0 2.9E-83 6.3E-88 675.7 51.3 429 30-472 2-457 (539)
9 PLN02191 L-ascorbate oxidase 100.0 6.5E-83 1.4E-87 673.1 51.5 445 10-472 3-484 (574)
10 PLN02604 oxidoreductase 100.0 8E-82 1.7E-86 666.2 53.0 435 22-472 15-484 (566)
11 TIGR03388 ascorbase L-ascorbat 100.0 3.1E-81 6.8E-86 659.9 50.3 425 31-472 1-461 (541)
12 TIGR03390 ascorbOXfungal L-asc 100.0 8.7E-81 1.9E-85 654.7 49.3 420 33-472 10-459 (538)
13 TIGR01480 copper_res_A copper- 100.0 1.6E-67 3.4E-72 553.8 43.4 262 32-318 46-352 (587)
14 PRK10965 multicopper oxidase; 100.0 6.8E-62 1.5E-66 507.6 39.1 244 32-296 46-300 (523)
15 PRK10883 FtsI repressor; Provi 100.0 1.9E-59 4.1E-64 485.1 38.7 240 33-294 47-295 (471)
16 TIGR02376 Cu_nitrite_red nitri 100.0 5.4E-50 1.2E-54 393.9 25.8 265 26-319 22-299 (311)
17 COG2132 SufI Putative multicop 100.0 2E-46 4.2E-51 389.5 35.0 229 44-296 46-275 (451)
18 PF07732 Cu-oxidase_3: Multico 100.0 6.5E-38 1.4E-42 264.1 11.5 115 37-151 1-116 (117)
19 PF00394 Cu-oxidase: Multicopp 100.0 1.3E-29 2.8E-34 226.6 17.4 154 163-318 1-159 (159)
20 TIGR03095 rusti_cyanin rusticy 99.8 1.2E-19 2.6E-24 158.7 11.3 104 44-149 35-148 (148)
21 TIGR01480 copper_res_A copper- 99.7 2.4E-17 5.1E-22 174.4 11.1 112 30-149 471-587 (587)
22 TIGR03096 nitroso_cyanin nitro 99.5 8E-13 1.7E-17 111.9 11.6 94 27-135 20-121 (135)
23 PRK10965 multicopper oxidase; 99.2 2.6E-09 5.6E-14 112.6 23.3 232 50-297 212-509 (523)
24 PLN02835 oxidoreductase 99.1 5.8E-09 1.3E-13 110.4 21.8 243 50-297 191-498 (539)
25 TIGR03389 laccase laccase, pla 99.1 1.4E-08 3E-13 108.2 23.0 246 51-299 167-508 (539)
26 PRK10883 FtsI repressor; Provi 99.1 5.8E-09 1.3E-13 108.9 18.4 222 48-297 207-454 (471)
27 PF07731 Cu-oxidase_2: Multico 99.0 2.7E-10 5.9E-15 99.3 5.9 89 61-150 33-136 (138)
28 PLN02354 copper ion binding / 98.9 1.5E-07 3.3E-12 99.8 19.4 243 51-297 190-505 (552)
29 COG2132 SufI Putative multicop 98.9 7.3E-08 1.6E-12 100.7 16.6 231 47-297 186-435 (451)
30 PLN02168 copper ion binding / 98.8 4.9E-07 1.1E-11 95.7 20.9 240 51-296 189-501 (545)
31 PLN02792 oxidoreductase 98.8 1.5E-06 3.2E-11 92.1 24.0 243 50-297 179-490 (536)
32 TIGR03388 ascorbase L-ascorbat 98.8 1.2E-07 2.5E-12 101.1 15.9 232 63-298 204-511 (541)
33 PLN02991 oxidoreductase 98.8 1.4E-06 2.9E-11 92.2 23.2 243 50-297 190-497 (543)
34 PLN02604 oxidoreductase 98.7 5.5E-07 1.2E-11 96.3 18.0 232 62-298 224-534 (566)
35 PRK02710 plastocyanin; Provisi 98.7 1.8E-07 3.8E-12 79.2 10.9 74 61-149 46-119 (119)
36 TIGR03390 ascorbOXfungal L-asc 98.6 1.7E-06 3.7E-11 92.1 17.8 243 51-297 172-518 (538)
37 PF13473 Cupredoxin_1: Cupredo 98.5 2.1E-07 4.5E-12 76.9 6.7 70 62-148 35-104 (104)
38 PF07731 Cu-oxidase_2: Multico 98.5 1.1E-06 2.5E-11 76.3 10.5 78 217-297 33-121 (138)
39 TIGR02656 cyanin_plasto plasto 98.5 6.8E-07 1.5E-11 73.1 7.9 82 61-149 16-99 (99)
40 PLN02191 L-ascorbate oxidase 98.5 7.6E-06 1.6E-10 87.6 18.1 240 55-298 219-534 (574)
41 PF00127 Copper-bind: Copper b 98.3 2E-06 4.3E-11 70.4 6.4 77 61-149 16-99 (99)
42 TIGR02376 Cu_nitrite_red nitri 98.3 2.9E-06 6.2E-11 84.1 8.7 99 51-151 189-298 (311)
43 PRK02888 nitrous-oxide reducta 98.1 1E-05 2.3E-10 85.2 9.6 97 43-151 534-635 (635)
44 PLN00044 multi-copper oxidase- 98.1 6.6E-05 1.4E-09 80.2 15.0 84 194-297 49-133 (596)
45 TIGR03094 sulfo_cyanin sulfocy 98.0 0.00016 3.5E-09 63.8 12.4 97 52-152 74-188 (195)
46 TIGR02657 amicyanin amicyanin. 97.9 5.2E-05 1.1E-09 59.8 8.2 74 61-149 10-83 (83)
47 PF06525 SoxE: Sulfocyanin (So 97.9 0.00011 2.3E-09 66.3 9.9 100 52-152 75-189 (196)
48 TIGR02375 pseudoazurin pseudoa 97.7 0.00014 3.1E-09 60.8 8.2 75 61-151 14-89 (116)
49 PF00394 Cu-oxidase: Multicopp 97.7 7.1E-05 1.5E-09 66.8 6.9 82 50-132 36-135 (159)
50 PF07732 Cu-oxidase_3: Multico 97.6 6.7E-05 1.5E-09 63.2 4.7 86 194-298 15-101 (117)
51 KOG1263 Multicopper oxidases [ 97.6 0.0023 4.9E-08 68.0 17.0 87 194-300 48-135 (563)
52 COG3794 PetE Plastocyanin [Ene 97.6 0.00038 8.3E-09 58.9 8.1 75 62-150 54-128 (128)
53 TIGR03102 halo_cynanin halocya 97.3 0.0015 3.3E-08 54.5 8.2 74 61-149 41-115 (115)
54 TIGR03095 rusti_cyanin rusticy 96.5 0.013 2.7E-07 51.5 7.8 87 191-296 39-133 (148)
55 TIGR03096 nitroso_cyanin nitro 96.1 0.02 4.3E-07 49.0 7.0 61 217-296 60-120 (135)
56 PF13473 Cupredoxin_1: Cupredo 95.2 0.09 1.9E-06 43.1 7.3 61 217-296 34-94 (104)
57 PF00116 COX2: Cytochrome C ox 95.1 0.13 2.8E-06 43.4 8.1 72 61-148 45-119 (120)
58 COG4454 Uncharacterized copper 94.7 0.26 5.6E-06 42.9 9.0 89 58-150 59-158 (158)
59 PRK10378 inactive ferrous ion 94.7 0.27 5.8E-06 49.7 10.5 78 58-152 40-119 (375)
60 TIGR02695 azurin azurin. Azuri 94.6 0.16 3.4E-06 42.7 7.3 87 61-148 15-125 (125)
61 TIGR02866 CoxB cytochrome c ox 93.6 0.64 1.4E-05 43.1 10.1 77 61-152 116-194 (201)
62 PF06525 SoxE: Sulfocyanin (So 93.6 0.29 6.2E-06 44.5 7.3 88 194-296 74-171 (196)
63 TIGR02656 cyanin_plasto plasto 92.3 0.38 8.3E-06 39.0 5.8 70 217-295 16-85 (99)
64 COG1622 CyoA Heme/copper-type 89.3 4.3 9.4E-05 38.8 10.7 78 61-152 136-214 (247)
65 COG4454 Uncharacterized copper 89.1 1.6 3.6E-05 38.0 7.0 75 217-296 62-142 (158)
66 PF00116 COX2: Cytochrome C ox 88.2 4.1 8.8E-05 34.3 8.8 61 217-297 45-105 (120)
67 PF12690 BsuPI: Intracellular 87.3 10 0.00022 29.6 9.9 66 227-294 3-82 (82)
68 COG4263 NosZ Nitrous oxide red 86.9 0.99 2.1E-05 45.9 4.9 78 62-149 558-636 (637)
69 PRK02888 nitrous-oxide reducta 82.8 3.6 7.9E-05 44.3 7.2 62 217-296 554-617 (635)
70 PRK02710 plastocyanin; Provisi 80.2 5.3 0.00012 33.5 6.1 60 217-295 46-105 (119)
71 COG2967 ApaG Uncharacterized p 79.0 2.1 4.5E-05 35.5 3.0 54 74-127 34-95 (126)
72 TIGR03079 CH4_NH3mon_ox_B meth 78.4 21 0.00046 35.7 10.2 62 56-123 276-354 (399)
73 PF00127 Copper-bind: Copper b 72.8 5.7 0.00012 32.0 4.1 64 217-295 16-85 (99)
74 PF01835 A2M_N: MG2 domain; I 71.2 19 0.00041 28.7 6.9 72 222-297 11-86 (99)
75 PF10633 NPCBM_assoc: NPCBM-as 71.1 29 0.00064 26.4 7.6 67 222-296 1-75 (78)
76 PF12690 BsuPI: Intracellular 68.7 17 0.00036 28.4 5.7 57 62-129 16-79 (82)
77 TIGR02695 azurin azurin. Azuri 67.2 46 0.001 28.1 8.3 79 217-295 15-111 (125)
78 PF07705 CARDB: CARDB; InterP 66.5 61 0.0013 25.3 10.0 67 221-297 14-84 (101)
79 MTH00140 COX2 cytochrome c oxi 65.7 1.2E+02 0.0026 28.5 12.5 77 61-151 139-216 (228)
80 PF04744 Monooxygenase_B: Mono 64.5 14 0.00031 36.9 5.6 70 48-123 249-335 (381)
81 PF14344 DUF4397: Domain of un 63.5 85 0.0018 26.0 11.0 21 229-249 3-24 (122)
82 PRK10378 inactive ferrous ion 59.9 49 0.0011 33.6 8.6 78 215-318 41-118 (375)
83 PF05506 DUF756: Domain of unk 59.2 50 0.0011 25.9 7.0 63 61-131 8-73 (89)
84 PRK05461 apaG CO2+/MG2+ efflux 59.1 13 0.00029 31.6 3.8 20 99-118 66-85 (127)
85 PF04151 PPC: Bacterial pre-pe 58.9 51 0.0011 24.3 6.7 65 218-295 5-69 (70)
86 TIGR02866 CoxB cytochrome c ox 58.7 35 0.00075 31.5 6.9 60 218-297 117-176 (201)
87 PF05938 Self-incomp_S1: Plant 57.7 26 0.00057 28.7 5.4 70 73-151 2-71 (110)
88 TIGR03094 sulfo_cyanin sulfocy 52.6 1.4E+02 0.003 27.1 9.1 103 196-318 75-187 (195)
89 PF11142 DUF2917: Protein of u 50.0 61 0.0013 23.8 5.6 47 220-278 2-48 (63)
90 COG1622 CyoA Heme/copper-type 49.9 56 0.0012 31.2 6.9 61 217-297 136-196 (247)
91 PF04379 DUF525: Protein of un 49.0 9.9 0.00021 30.3 1.4 22 99-120 49-70 (90)
92 PF05506 DUF756: Domain of unk 44.0 1.5E+02 0.0033 23.0 8.0 58 226-295 20-77 (89)
93 PF04379 DUF525: Protein of un 41.7 82 0.0018 25.0 5.6 49 227-278 15-67 (90)
94 MTH00047 COX2 cytochrome c oxi 41.7 2.8E+02 0.0061 25.4 13.2 76 63-152 117-193 (194)
95 KOG4063 Major epididymal secre 40.3 2.1E+02 0.0046 25.0 8.1 75 46-122 34-123 (158)
96 PF11614 FixG_C: IG-like fold 40.1 1.3E+02 0.0028 24.8 7.0 48 227-282 34-82 (118)
97 COG1188 Ribosome-associated he 40.0 21 0.00045 28.9 1.9 30 53-82 36-65 (100)
98 PF07691 PA14: PA14 domain; I 39.4 1.5E+02 0.0033 24.9 7.6 65 218-287 52-123 (145)
99 COG3794 PetE Plastocyanin [Ene 37.9 1.2E+02 0.0026 25.8 6.3 62 217-296 53-114 (128)
100 TIGR02375 pseudoazurin pseudoa 37.6 93 0.002 26.0 5.6 19 217-235 14-32 (116)
101 PRK09918 putative fimbrial cha 36.5 1.8E+02 0.0038 27.5 8.0 18 61-78 75-92 (230)
102 smart00758 PA14 domain in bact 34.9 2.6E+02 0.0056 23.3 8.2 61 219-284 51-112 (136)
103 PRK05461 apaG CO2+/MG2+ efflux 34.4 1.1E+02 0.0023 26.1 5.5 49 227-278 32-84 (127)
104 TIGR01432 QOXA cytochrome aa3 33.8 3.9E+02 0.0085 24.8 10.8 75 62-151 130-206 (217)
105 cd00916 Npc2_like Niemann-Pick 33.6 1.6E+02 0.0036 24.6 6.6 18 105-122 75-92 (123)
106 PF10989 DUF2808: Protein of u 33.5 45 0.00098 29.0 3.2 29 106-134 96-127 (146)
107 MTH00047 COX2 cytochrome c oxi 31.4 1.8E+02 0.0039 26.7 6.9 59 218-296 116-174 (194)
108 cd00918 Der-p2_like Several gr 29.7 2E+02 0.0044 24.1 6.4 61 62-122 20-88 (120)
109 TIGR01433 CyoA cytochrome o ub 29.1 1.3E+02 0.0028 28.4 5.7 59 218-296 139-197 (226)
110 COG3354 FlaG Putative archaeal 28.7 3.9E+02 0.0085 23.2 8.7 63 226-294 70-140 (154)
111 PRK15188 fimbrial chaperone pr 27.7 3.7E+02 0.008 25.3 8.5 18 61-78 79-96 (228)
112 PF14451 Ub-Mut7C: Mut7-C ubiq 27.3 52 0.0011 25.6 2.2 27 49-75 48-74 (81)
113 PF14478 DUF4430: Domain of un 24.6 61 0.0013 24.0 2.1 27 49-75 39-68 (68)
114 PF05753 TRAP_beta: Translocon 24.2 4.3E+02 0.0094 23.9 8.0 22 107-128 81-103 (181)
115 PRK15218 fimbrial chaperone pr 24.1 4E+02 0.0087 25.0 8.0 19 61-79 74-92 (226)
116 PRK10183 hypothetical protein; 23.7 94 0.002 22.3 2.7 19 218-236 32-50 (56)
117 COG4633 Plastocyanin domain co 23.7 4.8E+02 0.01 24.6 8.0 89 44-153 79-172 (272)
118 TIGR02988 YaaA_near_RecF S4 do 23.7 45 0.00097 23.9 1.2 22 53-74 36-58 (59)
119 PRK13202 ureB urease subunit b 23.6 2.6E+02 0.0056 22.8 5.5 64 218-282 11-84 (104)
120 TIGR02657 amicyanin amicyanin. 23.2 1.2E+02 0.0027 23.3 3.7 28 433-462 11-38 (83)
121 PF04744 Monooxygenase_B: Mono 23.0 44 0.00096 33.6 1.4 53 98-150 71-128 (381)
122 TIGR01432 QOXA cytochrome aa3 22.9 1.7E+02 0.0037 27.2 5.3 59 218-296 130-188 (217)
123 PF15415 DUF4622: Protein of u 22.8 5.6E+02 0.012 24.3 8.3 65 218-283 94-175 (310)
124 MTH00008 COX2 cytochrome c oxi 22.5 3E+02 0.0066 25.9 6.9 75 62-151 140-216 (228)
125 PRK13202 ureB urease subunit b 22.4 2.8E+02 0.0061 22.6 5.5 63 63-127 12-88 (104)
126 KOG1554 COP9 signalosome, subu 22.3 57 0.0012 31.5 1.9 26 127-152 134-174 (347)
127 PF10794 DUF2606: Protein of u 22.2 1.8E+02 0.0039 24.3 4.5 57 10-66 16-77 (131)
128 PTZ00047 cytochrome c oxidase 22.1 4.4E+02 0.0095 23.5 7.2 40 109-151 107-149 (162)
129 TIGR01433 CyoA cytochrome o ub 22.1 2.6E+02 0.0056 26.3 6.3 75 62-151 139-215 (226)
130 MTH00140 COX2 cytochrome c oxi 21.9 2.5E+02 0.0055 26.4 6.3 59 218-296 140-198 (228)
131 KOG4387 Ornithine decarboxylas 21.8 34 0.00074 30.6 0.3 28 65-92 72-99 (191)
132 PF14326 DUF4384: Domain of un 21.6 3.8E+02 0.0081 20.5 8.3 15 222-236 3-17 (83)
133 MTH00051 COX2 cytochrome c oxi 21.4 6.9E+02 0.015 23.5 11.4 73 62-150 144-219 (234)
134 TIGR03396 PC_PLC phospholipase 21.4 5.4E+02 0.012 28.7 9.3 80 44-131 574-658 (690)
135 PRK15208 long polar fimbrial c 20.6 4.7E+02 0.01 24.5 7.8 19 61-79 73-91 (228)
136 KOG4680 Uncharacterized conser 20.4 5.1E+02 0.011 22.4 6.9 67 32-113 34-103 (153)
137 PF10636 hemP: Hemin uptake pr 20.4 1.5E+02 0.0032 19.5 2.9 19 218-236 14-32 (38)
138 PF14524 Wzt_C: Wzt C-terminal 20.3 4.4E+02 0.0096 21.7 7.1 72 221-296 30-107 (142)
139 PLN03148 Blue copper-like prot 20.1 4.7E+02 0.01 23.4 7.1 32 118-151 89-120 (167)
140 PF07172 GRP: Glycine rich pro 20.1 59 0.0013 26.1 1.3 12 15-26 12-23 (95)
No 1
>PLN02991 oxidoreductase
Probab=100.00 E-value=2.2e-93 Score=743.05 Aligned_cols=440 Identities=50% Similarity=0.908 Sum_probs=355.9
Q ss_pred HHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCC
Q 012003 12 VSFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGV 91 (473)
Q Consensus 12 ~~~~~~~~~l~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~ 91 (473)
.+.++.|+||+++..|.+++++|+|+|++..++|||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||+
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~vt~~~~~pdG~~r~~~~vNG~~PGP~I~~~~GD~v~V~V~N~L~~~ttiHWHGi 88 (543)
T PLN02991 9 TAMILGLLFLISFVAAEDPYRFFEWHVTYGNISPLGVAQQGILINGKFPGPDIISVTNDNLIINVFNHLDEPFLISWSGI 88 (543)
T ss_pred HHHHHHHHHHHhhhhccCceEEEEEEEEEEEeCCCCEEEEEEEEcCCCCCCcEEEECCCEEEEEecCCCCCCccEEECCc
Confidence 45667778888888888889999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEee
Q 012003 92 QHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISD 171 (473)
Q Consensus 92 ~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d 171 (473)
+|..++||||+++|||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.++..+++|++++|+|
T Consensus 89 ~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~d~~i~l~D 168 (543)
T PLN02991 89 RNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGGFGAIRISSRPLIPVPFPAPADDYTVLIGD 168 (543)
T ss_pred ccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCCeeeEEEeCCcccCcccccccceeEEEecc
Confidence 99999999999989999999999999999976899999999999999999999999999876666666678899999999
Q ss_pred ceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeE
Q 012003 172 WYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLL 251 (473)
Q Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 251 (473)
|+++....+...+..+...+.+|.+||||++. .+.+++++||+|||||||+|..+.+.|+|+||+|+
T Consensus 169 W~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~-------------~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~t 235 (543)
T PLN02991 169 WYKTNHKDLRAQLDNGGKLPLPDGILINGRGS-------------GATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMK 235 (543)
T ss_pred eecCCHHHHHHHhhcCCCCCCCCEEEEccCCC-------------CceEEECCCCEEEEEEEeccCCeeEEEEECCCEEE
Confidence 99987666655555555567899999999975 26799999999999999999999999999999999
Q ss_pred EEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCC
Q 012003 252 LVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPN 331 (473)
Q Consensus 252 via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~ 331 (473)
|||+||.+++|..++++.|++||||||+|+++++++ +|||++...+... .....|||+|+++..+...+.|..|.
T Consensus 236 VIa~DG~~~~p~~~~~l~i~~GQRydvlv~a~~~~~-~y~i~~~~~~~~~----~~~~~AIl~Y~g~~~~~~~~~p~~p~ 310 (543)
T PLN02991 236 LVEVEGTHTIQTPFSSLDVHVGQSYSVLITADQPAK-DYYIVVSSRFTSK----ILITTGVLHYSNSAGPVSGPIPDGPI 310 (543)
T ss_pred EEEeCCccccceeeeEEEEcCCcEEEEEEECCCCCC-cEEEEEeeccCCC----CcceEEEEEeCCCCCCCCCCCCCCCc
Confidence 999999999999999999999999999999999888 9999998754322 25678999999875322223343332
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCC
Q 012003 332 AYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~ 411 (473)
+..+..+.....+..+.+....+.|...+.......++++.+..... ..+|+.+|+|||++|..|++|+|++.++.+
T Consensus 311 --~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~ 387 (543)
T PLN02991 311 --QLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINITRTIRLANSAG-NIEGKQRYAVNSASFYPADTPLKLADYFKI 387 (543)
T ss_pred --cccccccchhhhhhcccCCCCCCCCCccccccccccceeEEEeeccc-ccCceEEEEECCCccCCCCCChhhhhhhcc
Confidence 11222222111223343333334444332222233444444443211 124677999999999999999998877766
Q ss_pred CCccccC-CCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 412 PGAYKLD-FPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 412 ~~~~~~~-~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
.|.|+.+ +++.|........++++.+++|++|||||+|.+...||||||||+|||||+|.|
T Consensus 388 ~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G 449 (543)
T PLN02991 388 AGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENWEDIVQTWHLDGYSFYVVGMELG 449 (543)
T ss_pred cCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCCCCCCCCeeeCCcceEEEEeCCC
Confidence 7877643 444444333445678899999999999999998899999999999999999987
No 2
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=100.00 E-value=2.4e-93 Score=746.73 Aligned_cols=448 Identities=72% Similarity=1.259 Sum_probs=350.3
Q ss_pred cccCCCeEEEEEEEEEEEecCCC--ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCC
Q 012003 25 CFGGDPYVFYDWTISYVTASPLG--DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV 102 (473)
Q Consensus 25 ~~a~~~~~~~~l~~~~~~~~~dG--~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv 102 (473)
+.|.+++++|+|+|++..++||| ..+++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|+.++|+||+
T Consensus 21 ~~~~~~~~~y~~~v~~~~~~pdg~~~~~~vi~vNGq~PGPtI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv 100 (596)
T PLN00044 21 AGAGDPYAYYDWEVSYVSAAPLGGVKKQEAIGINGQFPGPALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGV 100 (596)
T ss_pred cccCCceEEEEEEEEEEEEccCCCceeeEEEEEcCcCCCCcEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCC
Confidence 44677789999999999999999 5568999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCC-CCceEEEEeeceecchHHHH
Q 012003 103 LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVP-DGDITIFISDWYTKSHKKLR 181 (473)
Q Consensus 103 ~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~-~~e~~l~l~d~~~~~~~~~~ 181 (473)
++|||||+||++|+|+|++++++||||||||++.|+++||+|+|||++++..+.|+... ++|.+|+|+||++....++.
T Consensus 101 ~~TQcPI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~~~Gl~GalII~~~~~~~~P~~~~~~~e~~i~l~DW~~~~~~~~~ 180 (596)
T PLN00044 101 GGTNCAIPAGWNWTYQFQVKDQVGSFFYAPSTALHRAAGGYGAITINNRDVIPIPFGFPDGGDITLFIADWYARDHRALR 180 (596)
T ss_pred CCCcCCcCCCCcEEEEEEeCCCCceeEeeccchhhhhCcCeeEEEEcCcccccccccCCcccceEEEecccccCCHHHHH
Confidence 88999999999999999998789999999999999999999999999987655666543 47999999999998776665
Q ss_pred HhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceee
Q 012003 182 KDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV 261 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~ 261 (473)
..+..+.....++.++|||++.+.++|+.....+..+.++|++||+|||||||++..+.+.|+|+||+|+|||+||.+++
T Consensus 181 ~~l~~g~~~~~~d~~lING~g~~~~n~~~~~~~~~~~~i~V~~Gk~yRlRiINaa~~~~~~fsIdgH~mtVIa~DG~~v~ 260 (596)
T PLN00044 181 RALDAGDLLGAPDGVLINAFGPYQYNDSLVPPGITYERINVDPGKTYRFRVHNVGVATSLNFRIQGHNLLLVEAEGSYTS 260 (596)
T ss_pred HHHhcCCCCCCCCceEEcccCccccCCccccCCCccceEEECCCCEEEEEEEEccCCceEEEEECCCEEEEEEeCCcccC
Confidence 55555555567899999999886555543222344578999999999999999999999999999999999999999999
Q ss_pred eeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCC-CCCcccccc
Q 012003 262 QQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPN-AYDTYFSMN 340 (473)
Q Consensus 262 p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~-~~~~~~~~~ 340 (473)
|..++.|.|++||||||+|+++|+++++|||++..............+.|||+|.++......+.|..+. .++..++.+
T Consensus 261 P~~vd~i~I~~GQRydVLV~a~q~~~~~Y~i~a~~~~~~~~~~~~~~~~AIl~Y~~~~~~~~~~~P~~p~~~~d~~~~~~ 340 (596)
T PLN00044 261 QQNYTNLDIHVGQSYSFLLTMDQNASTDYYVVASARFVDAAVVDKLTGVAILHYSNSQGPASGPLPDAPDDQYDTAFSIN 340 (596)
T ss_pred ceeeeeEEEcCCceEEEEEECCCCCCCceEEEEecccccCccccCcceeEEEEECCCCCCCCCCCCCCCcccCCchhhhh
Confidence 9999999999999999999999876448999987542211113456788999998865322222343331 222222222
Q ss_pred cccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCC
Q 012003 341 QARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFP 420 (473)
Q Consensus 341 ~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~ 420 (473)
....+..........+.|+...+.......+.+.+.........|+..|+|||++|..|+.|+|++.+++..++|+.+++
T Consensus 341 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~s~Nnvsf~~p~~p~L~a~~~~~~gv~~~~fp 420 (596)
T PLN00044 341 QARSIRWNVTASGARPNPQGSFHYGDITVTDVYLLQSMAPELIDGKLRATLNEISYIAPSTPLMLAQIFNVPGVFKLDFP 420 (596)
T ss_pred hhHhhhhccCCCcCCCCCcccceeeEEeeeeeeeeccccccccCCeEEEEECcccCCCCCCcchhhhhccCCCcccCCCC
Confidence 22233322222223344443222211222222222110000123578999999999999999998888877888876677
Q ss_pred CCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 421 YKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 421 ~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
+.|........+.++.+++|++|||||+|....+||||||||+|||||+|+|
T Consensus 421 ~~pp~~~~~~~t~v~~~~~n~~VeiV~qn~~~~~HP~HLHGh~F~Vvg~G~G 472 (596)
T PLN00044 421 NHPMNRLPKLDTSIINGTYKGFMEIIFQNNATNVQSYHLDGYAFFVVGMDYG 472 (596)
T ss_pred CCCCccccccCceEEEcCCCCEEEEEEeCCCCCCCCeeEcCccEEEEeecCC
Confidence 6665444445788999999999999999987789999999999999999987
No 3
>PLN02835 oxidoreductase
Probab=100.00 E-value=8.6e-92 Score=734.58 Aligned_cols=445 Identities=52% Similarity=0.902 Sum_probs=350.7
Q ss_pred cchhHHHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCcee
Q 012003 7 LCSSCVSFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLL 86 (473)
Q Consensus 7 ~~~~~~~~~~~~~~l~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~si 86 (473)
++.-|++-.++++...+...+.+++|+|+|+|++...++||+.+.+|+||||+|||+|++++||+|+|+|+|+|+++|+|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~v~~~~~~~dg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~L~~~tti 84 (539)
T PLN02835 5 VNLHLLLGVLAVLSSVSLVNGEDPYKYYTWTVTYGTISPLGVPQQVILINGQFPGPRLDVVTNDNIILNLINKLDQPFLL 84 (539)
T ss_pred HHHHHHHHHHHHHHHHhhhhccCcEEEEEEEEEEEEeccCCeEEEEEEECCcCCCCCEEEECCCEEEEEEEeCCCCCCcE
Confidence 33444444444444444444556789999999999999999999999999999999999999999999999999999999
Q ss_pred eeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceE
Q 012003 87 TWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDIT 166 (473)
Q Consensus 87 H~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 166 (473)
||||++|..++||||+++|||||+||++|+|+|++++++||||||||.+.|+++||+|+|||++++..+.++..+|+|++
T Consensus 85 HWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl~G~lIV~~~~~~~~p~~~~d~e~~ 164 (539)
T PLN02835 85 TWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGGFGAINVYERPRIPIPFPLPDGDFT 164 (539)
T ss_pred EeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcccceeEEeCCCCCCcCCCCCCceEE
Confidence 99999999999999999999999999999999998778999999999999999999999999876555556667799999
Q ss_pred EEEeeceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEe
Q 012003 167 IFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQ 246 (473)
Q Consensus 167 l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~ 246 (473)
++++||+++....+...+..+...+.++.+||||+.. +.+++++||+|||||||+|..+.+.|+|+
T Consensus 165 l~l~Dw~~~~~~~~~~~~~~g~~~~~~d~~liNG~~~--------------~~~~v~~G~~yRlRliNa~~~~~~~f~i~ 230 (539)
T PLN02835 165 LLVGDWYKTSHKTLQQRLDSGKVLPFPDGVLINGQTQ--------------STFSGDQGKTYMFRISNVGLSTSLNFRIQ 230 (539)
T ss_pred EEeeccccCCHHHHHHHhhcCCCCCCCceEEEccccC--------------ceEEECCCCEEEEEEEEcCCCccEEEEEC
Confidence 9999999987766655555566667889999999986 77999999999999999999999999999
Q ss_pred CceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCC
Q 012003 247 NHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPL 326 (473)
Q Consensus 247 gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~ 326 (473)
||+|+|||+||.+++|..++.+.|++||||||+|++++++| +|||++...+.+ ......|+|+|.++..+.+.++
T Consensus 231 gH~~~VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~~~g-~y~i~a~~~~~~----~~~~~~ail~Y~~~~~~~~~~~ 305 (539)
T PLN02835 231 GHTMKLVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQSPK-DYYIVASTRFTR----QILTATAVLHYSNSRTPASGPL 305 (539)
T ss_pred CCEEEEEEECCccCCCceeeEEEECcCceEEEEEEcCCCCC-cEEEEEEccccC----CCcceEEEEEECCCCCCCCCCC
Confidence 99999999999999999999999999999999999998888 999998654332 1356789999988643322233
Q ss_pred CCCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhh
Q 012003 327 PDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLA 406 (473)
Q Consensus 327 p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~ 406 (473)
|..|. .+..+.+..+......+......+.|...........++++.+..... ..+|...|+|||++|..|++|+|++
T Consensus 306 p~~p~-~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~w~iN~~s~~~p~~P~L~~ 383 (539)
T PLN02835 306 PALPS-GELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPTKTIVLANSAP-LINGKQRYAVNGVSYVNSDTPLKLA 383 (539)
T ss_pred CCCCc-cccccccchhhccccccCccccCCCCCccccccccCCCceEEEecccc-ccCCeEEEEECCcccCCCCCChhhh
Confidence 43221 011112222222222233333333333222221223455555543221 2356789999999999999999987
Q ss_pred hhcCCCCccccC-CCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 407 QQFNIPGAYKLD-FPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 407 ~~~~~~~~~~~~-~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
.+...++.|+.. +...+.+...+.+++++.+++|++|||+|+|.+...||||||||+||||++|.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~~~~~HP~HLHGh~F~Vlg~G~g 450 (539)
T PLN02835 384 DYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNNEKTMQSWHLDGYDFWVVGYGSG 450 (539)
T ss_pred hhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECCCCCCCCCCCCCccEEEEeccCC
Confidence 776666777742 233344334566789999999999999999999899999999999999999976
No 4
>PLN02354 copper ion binding / oxidoreductase
Probab=100.00 E-value=2.1e-91 Score=732.60 Aligned_cols=432 Identities=52% Similarity=0.921 Sum_probs=342.5
Q ss_pred ccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGT 105 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 105 (473)
.|.+++++|+|+|++..+++||+.+++++||||+|||+|++++||+|+|+|+|+|+++++|||||++|+.++||||+++|
T Consensus 22 ~~~~~~~~y~~~v~~~~~~pdG~~r~~~~iNGq~PGP~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~T 101 (552)
T PLN02354 22 RAEDPYFFFTWNVTYGTASPLGVPQQVILINGQFPGPNINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGT 101 (552)
T ss_pred hccccEEEEEEEEEEEEecCCCeEEEEEEECCCCcCCcEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCC
Confidence 34557899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhh
Q 012003 106 NCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 106 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 185 (473)
||||+||++|+|+|++.+++||||||||.+.|+.+||+|+|||+++...+.+|+.+++|++|+|+||+++....+...+.
T Consensus 102 QcpI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~~~Gl~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~ 181 (552)
T PLN02354 102 NCPIPPGTNFTYHFQPKDQIGSYFYYPSTGMHRAAGGFGGLRVNSRLLIPVPYADPEDDYTVLIGDWYTKSHTALKKFLD 181 (552)
T ss_pred cCCCCCCCcEEEEEEeCCCCcceEEecCccceecCCccceEEEcCCcCCCCCCCCcCceEEEEeeeeccCCHHHHHHHHh
Confidence 99999999999999986689999999999999999999999999987666677667899999999999997766665555
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeee
Q 012003 186 NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNY 265 (473)
Q Consensus 186 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~ 265 (473)
.+...+.++.+||||+....| ....+.+++++||+|||||||+|....+.|+|+||+|+|||+||.+++|..+
T Consensus 182 ~g~~~~~~d~~liNG~~~~~~-------~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~tVIa~DG~~v~p~~~ 254 (552)
T PLN02354 182 SGRTLGRPDGVLINGKSGKGD-------GKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMKLVEMEGSHVLQNDY 254 (552)
T ss_pred cCCCCCCCCeEEEeCCcCCCC-------CCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEEEEEeCCcccCCcce
Confidence 555556789999999975432 1234789999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccc
Q 012003 266 TNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSI 345 (473)
Q Consensus 266 d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~ 345 (473)
+++.|++||||||+|++++++| +|||++...+... .....|+|+|+++..+.+...|..+. +..+..+.+...
T Consensus 255 ~~l~i~~GqRydVlv~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~~~~p~~~~--~~~~~~~~~~~~ 327 (552)
T PLN02354 255 DSLDVHVGQCFSVLVTANQAPK-DYYMVASTRFLKK----VLTTTGIIRYEGGKGPASPELPEAPV--GWAWSLNQFRSF 327 (552)
T ss_pred eEEEEccCceEEEEEECCCCCC-cEEEEEeccccCC----CccEEEEEEECCCCCCCCCCCCCCCc--ccccchhhhhhh
Confidence 9999999999999999998888 9999998643322 36778999999865432222332221 111122222233
Q ss_pred ccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCC-CccccC-CCCCC
Q 012003 346 RWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIP-GAYKLD-FPYKL 423 (473)
Q Consensus 346 ~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~-~~~~~~-~~~~p 423 (473)
+.++.+....+.|.........+.++++.+..... ..+|..+|+|||++|..|++|+|++.++++. |.++.+ +++.|
T Consensus 328 ~~~l~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~p 406 (552)
T PLN02354 328 RWNLTASAARPNPQGSYHYGKINITRTIKLVNSAS-KVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNP 406 (552)
T ss_pred hhcccccccCCCCCCccccccccccceEEEecccc-cCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCC
Confidence 23333322233332222221224455555544221 1346778999999999999999987765443 666532 22222
Q ss_pred C--CCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 424 M--SRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 424 ~--~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
. ....+.+++++.+++|++|||||+|.+...||||||||+|||||+|.|
T Consensus 407 p~~~~~~~~~~~v~~~~~~~~VeiVi~n~~~~~HP~HLHGh~F~Vlg~G~G 457 (552)
T PLN02354 407 PAKITKIKIQPNVLNITFRTFVEIIFENHEKSMQSWHLDGYSFFAVAVEPG 457 (552)
T ss_pred ccccCccccCCeeEEcCCCCEEEEEEeCCCCCCCCCcCCCccEEEEeecCC
Confidence 1 122445778999999999999999998889999999999999999986
No 5
>PLN02792 oxidoreductase
Probab=100.00 E-value=1.5e-90 Score=722.82 Aligned_cols=429 Identities=49% Similarity=0.849 Sum_probs=344.1
Q ss_pred ccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGT 105 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~t 105 (473)
...+++++|+|+|++...++||+.+.+++||||+|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+++|
T Consensus 11 ~~~~~~~~~~~~vt~~~~~pdg~~~~~~~vNGq~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~t 90 (536)
T PLN02792 11 VKADDTLFYNWRVTYGNISLLTLPRRGILINGQFPGPEIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGT 90 (536)
T ss_pred hhcCCeEEEEEEEEEEEeCCCCeEEEEEEECCCCCCCcEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCC
Confidence 55667789999999999999999999999999999999999999999999999999999999999999999999999889
Q ss_pred CcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhh
Q 012003 106 NCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 106 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 185 (473)
||||+||++|+|+|++++|+||||||||.+.|+.+||+|+|||++++..+.+++.+++|++++|+||++.....+...+.
T Consensus 91 qcPI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl~G~liI~~~~~~~~p~~~~d~e~~i~l~Dw~~~~~~~~~~~~~ 170 (536)
T PLN02792 91 TCPIPPGKNYTYDFQVKDQVGSYFYFPSLAVQKAAGGYGSLRIYSLPRIPVPFPEPAGDFTFLIGDWYRRNHTTLKKILD 170 (536)
T ss_pred cCccCCCCcEEEEEEeCCCccceEEecCcchhhhcccccceEEeCCcccCcCCCcccceeEEEecccccCCHHHHHHHhh
Confidence 99999999999999997789999999999999999999999999866555566667889999999999987766655555
Q ss_pred CCCCCC-CCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeee
Q 012003 186 NGVDLG-VPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN 264 (473)
Q Consensus 186 ~~~~~~-~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 264 (473)
.+...+ .+|.+||||++... .+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..
T Consensus 171 ~g~~~~~~~d~~liNG~~~~~-----------~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tVI~~DG~~v~p~~ 239 (536)
T PLN02792 171 GGRKLPLMPDGVMINGQGVSY-----------VYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKLIEVEGTHTVQSM 239 (536)
T ss_pred ccCcCCCCCCEEEEeccCCCC-----------cceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEEEEeCCccCCCcc
Confidence 554334 78999999998643 278999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 012003 265 YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (473)
Q Consensus 265 ~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 344 (473)
+++|.|++||||||+|++++++| +|||++.+.+.+. .....|||+|.++..... ..|..|...+..+..+....
T Consensus 240 ~~~l~i~~GqRydVlV~a~~~~g-~Y~i~a~~~~~~~----~~~~~ail~Y~g~~~~~~-~~p~~p~~~~~~~~~~~~~~ 313 (536)
T PLN02792 240 YTSLDIHVGQTYSVLVTMDQPPQ-NYSIVVSTRFIAA----KVLVSSTLHYSNSKGHKI-IHARQPDPDDLEWSIKQAQS 313 (536)
T ss_pred eeEEEEccCceEEEEEEcCCCCc-eEEEEEEeccCCC----CCceEEEEEECCCCCCCC-CCCCCCCcCCccccccchhh
Confidence 99999999999999999998888 9999998764432 257789999998653211 11222211122222222222
Q ss_pred cccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCcccc-CCCCCC
Q 012003 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKL-DFPYKL 423 (473)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~-~~~~~p 423 (473)
.+..+....+.+.|+..++.....+++++.+..... ..++...|+|||+||..|++|+|++.++++.|.++. ++++.|
T Consensus 314 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p 392 (536)
T PLN02792 314 IRTNLTASGPRTNPQGSYHYGKMKISRTLILESSAA-LVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKP 392 (536)
T ss_pred hhhccCCCCCCCCCCcccccceeccceeEEeccccc-ccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCC
Confidence 233333322344554443333334455555443221 223567899999999999999998877766777764 245444
Q ss_pred CC-CCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 424 MS-RAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 424 ~~-~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
.. ......++++.+++|++|||||+|.+...||||||||+|||||+|.|
T Consensus 393 ~~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~G~G 442 (536)
T PLN02792 393 RRGGGMRLDTSVMGAHHNAFLEIIFQNREKIVQSYHLDGYNFWVVGINKG 442 (536)
T ss_pred cccCCCccCceEEEcCCCCEEEEEEECCCCCCCCeeeCCCceEEEeecCC
Confidence 32 12334678999999999999999988889999999999999999987
No 6
>PLN02168 copper ion binding / pectinesterase
Probab=100.00 E-value=2.3e-90 Score=721.73 Aligned_cols=428 Identities=51% Similarity=0.900 Sum_probs=334.2
Q ss_pred CCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCc
Q 012003 28 GDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNC 107 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~ 107 (473)
.+++++|+|+|++...+|||+.+++++||||+|||+|++++||+|+|+|+|+|+++|+|||||++|..++||||+++|||
T Consensus 23 ~a~~~~~~~~vt~~~~~pdG~~~~~~~vNG~~PGP~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQc 102 (545)
T PLN02168 23 FAPIVSYQWVVSYSQRFILGGNKQVIVINDMFPGPLLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNC 102 (545)
T ss_pred cccEEEEEEEEEEEEecCCCeEEEEEEECCcCCCCcEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcC
Confidence 35789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhhCC
Q 012003 108 PIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENG 187 (473)
Q Consensus 108 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 187 (473)
||+||++|+|+|++++++||||||||.+.|+.+||+|+|||++++..+.+++.+++|++|+|+||++.....+...+..+
T Consensus 103 pI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL~G~lII~~~~~~~~p~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~g 182 (545)
T PLN02168 103 PILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGGYGAIRIYNPELVPVPFPKPDEEYDILIGDWFYADHTVMRASLDNG 182 (545)
T ss_pred CCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcceeEEEEcCCcccCcCcCcccceeeEEEEecCCCCHHHHHhhhhcC
Confidence 99999999999999768999999999999999999999999998766666667789999999999998655554444444
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeE
Q 012003 188 VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (473)
Q Consensus 188 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (473)
...+.++.+||||++.. .+.+++++||+|||||||++..+.+.|+|+||+|+|||+||.+++|..+++
T Consensus 183 ~~~~~~d~~liNG~~~~------------~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tVIa~DG~~v~p~~~~~ 250 (545)
T PLN02168 183 HSLPNPDGILFNGRGPE------------ETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLLVETEGTYVQKRVYSS 250 (545)
T ss_pred CCCCCCCEEEEeccCCC------------cceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEEEEECCeECCCceeeE
Confidence 44567899999999842 278999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCceEEEEEEeCCCC-C--cceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 012003 268 MDIHVGQSFSFLVTTDQNA-S--SDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (473)
Q Consensus 268 v~l~pGeR~dv~v~~~~~~-g--~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 344 (473)
|.|++||||||+|++++++ | ++|||++.....+. ...+.|+|+|+++......++|..|...+.....+....
T Consensus 251 l~i~~GqRydvlv~a~~~~~g~~~~Y~i~a~~~~~~~----~~~~~ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~ 326 (545)
T PLN02168 251 LDIHVGQSYSVLVTAKTDPVGIYRSYYIVATARFTDA----YLGGVALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALS 326 (545)
T ss_pred EEEcCCceEEEEEEcCCCCCCCcceEEEEEEecccCC----CcceEEEEEECCCCCCCCCCCCCCCcccccccccchhhh
Confidence 9999999999999998654 3 38999998754332 267789999988653222233333321111111111111
Q ss_pred cccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccC-CCCCC
Q 012003 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLD-FPYKL 423 (473)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~-~~~~p 423 (473)
+...+.+....+.|...+.+.....++++.+..... ..+|..+|+|||++|..|++|+|++.+++..+.+..+ ++..|
T Consensus 327 ~~~~l~p~~~~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p 405 (545)
T PLN02168 327 IRMDLNVGAARSNPQGSYHYGRINVTRTIILHNDVM-LSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYP 405 (545)
T ss_pred hhhcCCCCCCCCCCcccccccccccceeEEeccccc-ccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCC
Confidence 111233222233333222222223455555443211 1346789999999999999999876655443333321 33333
Q ss_pred CCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 424 MSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 424 ~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
.+......++++.+++|++|||||+|.....||||||||+|||||+|.|
T Consensus 406 ~~~~~~~~~~v~~~~~~~~VeiViqn~~~~~HP~HLHGh~F~Vvg~g~g 454 (545)
T PLN02168 406 SNKTPTLGTSVVDIHYKDFYHIVFQNPLFSLESYHIDGYNFFVVGYGFG 454 (545)
T ss_pred CcCccccCceEEEecCCCEEEEEEeCCCCCCCCeeeCCCceEEEECCCC
Confidence 3222234578899999999999999998889999999999999999986
No 7
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=100.00 E-value=9.8e-85 Score=674.38 Aligned_cols=450 Identities=46% Similarity=0.756 Sum_probs=384.1
Q ss_pred HHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCC
Q 012003 13 SFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQ 92 (473)
Q Consensus 13 ~~~~~~~~l~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~ 92 (473)
++++++++++.++.|.++++.++|++++..++++|.+++++++||++|||+|+|++||+|+|+|.|+++++++|||||++
T Consensus 10 ~~~~~~~~~~~~~~a~~~~~~~~~~v~~~~~s~l~~~~~vi~iNG~fPGP~I~~~~gD~ivV~v~N~~~~~~sihWhGv~ 89 (563)
T KOG1263|consen 10 LFLCGSLLLVFFSQAEAPIRFHTWKVTYGTASPLCVEKQVITINGQFPGPTINAEEGDTIVVNVVNRLDEPFSIHWHGVR 89 (563)
T ss_pred HHHHHHHHHHHHhhhcCceEEEEeeEEeeeeccCCccceeEeecCCCCCCeEEEEeCCEEEEEEEeCCCCceEEEecccc
Confidence 34444444566677888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeec
Q 012003 93 HRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDW 172 (473)
Q Consensus 93 ~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~ 172 (473)
|+.++|+||+.+|||||+||++|+|+|++++|.||||||+|+++|+++|++|+|||.++...+.|++++|+|++|+++||
T Consensus 90 q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~liI~~~~~~p~pf~~pd~E~~ill~dW 169 (563)
T KOG1263|consen 90 QRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGALIINPRPGLPVPFPKPDKEFTILLGDW 169 (563)
T ss_pred ccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeEEEEcCCccCCCCCCCCCceeEEEeEee
Confidence 99999999944599999999999999999889999999999999999999999999999887788888999999999999
Q ss_pred eec-chHHHHHhhhCCCCCCC-CCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCcee
Q 012003 173 YTK-SHKKLRKDVENGVDLGV-PDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNL 250 (473)
Q Consensus 173 ~~~-~~~~~~~~~~~~~~~~~-~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~ 250 (473)
+++ ....+...++.++..+. +|..+|||+..+.++| .+++++++||+|||||+|+|....+.|+|+||.|
T Consensus 170 ~~~~~~~~l~~~~~~~~~~p~~~D~~~iNg~~g~~~~~--------~~~l~v~pGktY~lRiiN~g~~~~l~F~I~~H~l 241 (563)
T KOG1263|consen 170 YKNLNHKNLKNFLDRTGALPNPSDGVLINGRSGFLYNC--------TPTLTVEPGKTYRLRIINAGLNTSLNFSIANHQL 241 (563)
T ss_pred ccccCHHHHHHhhccCCCCCCCCCceEECCCCCcccCc--------eeEEEEcCCCEEEEEEEccccccceEEEECCeEE
Confidence 996 77788777776666555 8999999999765544 4899999999999999999999999999999999
Q ss_pred EEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCC---
Q 012003 251 LLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLP--- 327 (473)
Q Consensus 251 ~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p--- 327 (473)
+||++||.+++|..+++|.|.||||+||+|+++|.++ +|||++...+.+..-+......|+|+|.+...+.+...|
T Consensus 242 tvVe~Dg~y~~p~~~~~l~i~~GQ~~~vLvtadq~~~-~Y~i~~~~~~~~~~~~~~~t~~~~l~y~~~~~~~s~~~~~~~ 320 (563)
T KOG1263|consen 242 TVVEVDGAYTKPFTTDSLDIHPGQTYSVLLTADQSPG-DYYIAASPYFDASNVPFNLTTTGILRYSGSTHPASEKLPIYP 320 (563)
T ss_pred EEEEecceEEeeeeeceEEEcCCcEEEEEEeCCCCCC-cEEEEEEeeeccCCcceeeeEEEEEEEeCCcccCcccCcccc
Confidence 9999999999999999999999999999999999999 999999987765422225788999999985443332222
Q ss_pred CCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhh
Q 012003 328 DPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQ 407 (473)
Q Consensus 328 ~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~ 407 (473)
..+..++..++..+.+.++..++...+.++|+++++.......+.+.+.+... ..+++.+++||+.||..|++|.+++.
T Consensus 321 ~~~~~~~~~~s~~~~~~~r~~~~~~~~~~~P~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~siN~isf~~P~tp~~l~~ 399 (563)
T KOG1263|consen 321 FLPPGNDTAWSTYQARSIRSLLSASFARPVPQGSYHYGLITIGLTLKLCNSDN-KNNGKLRASINNISFVTPKTPSLLAA 399 (563)
T ss_pred cCCcccCchhhhhhhhcccccccccCcccCCCccccccceeeeccEEeccCCC-CCCcEEEEEEcceEEECCCCchhhhh
Confidence 22222244566667777777777778889999888877777777777766543 35778999999999999999999888
Q ss_pred hcCC-CCccccCCCCCCCC----CCCccceEEEeecCCcEEEEEEecCCC---CCCceeecCCccEEEeecCC
Q 012003 408 QFNI-PGAYKLDFPYKLMS----RAPKVDTSLINGTYKGFMEIIFQNNDT---TVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 408 ~~~~-~~~~~~~~~~~p~~----~~~~~~~~~~~~~~g~~Veivl~N~~~---~~HP~HLHGh~F~Vl~~g~~ 472 (473)
++.. ++.++.++++.|.. .+++.+++++.+++++.|||||+|.+. ..||||||||.|||||+|+|
T Consensus 400 ~~~~~~~~~~~d~p~~P~~~~~~~~~~~~t~v~~~~~~~~veIVlqN~~~~~~~~hp~HLHG~~F~Vvg~g~G 472 (563)
T KOG1263|consen 400 YFKNIPGYFTNDFPDKPPIKFDYTGPTLGTSVMKLEFNSFVEIVLQNTSTGTQENHPNHLHGYNFYVVGYGFG 472 (563)
T ss_pred hhccCCccccCccCCCCccccCCccccccceEEEeecCCEEEEEEeCCccccCCCCccceeceEEEEEEeccc
Confidence 8765 45666677777732 234899999999999999999999874 46899999999999999987
No 8
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=100.00 E-value=2.9e-83 Score=675.72 Aligned_cols=429 Identities=28% Similarity=0.515 Sum_probs=319.6
Q ss_pred CeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcc
Q 012003 30 PYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCP 108 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~ 108 (473)
.+|+|+|+|+++.+++||+++.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||++|..++|+||+++ ||||
T Consensus 2 ~~r~y~~~it~~~~~pdG~~~~~~~~NG~~PGP~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~p 81 (539)
T TIGR03389 2 EVRHYTFDVQEKNVTRLCSTKSILTVNGKFPGPTLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCP 81 (539)
T ss_pred ceEEEEEEEEEEEeccCCcEeEEEEECCcccCCEEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCC
Confidence 479999999999999999999999999999999999999999999999999999999999999999999999998 9999
Q ss_pred cCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHH-HhhhCC
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLR-KDVENG 187 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~-~~~~~~ 187 (473)
|+||++|+|+|++++++||||||||...|+ +||+|+|||+++...+.+++.+|+|++|+|+||+++....+. .....+
T Consensus 82 I~PG~s~~Y~f~~~~~~GT~WYHsH~~~~~-~Gl~G~lIV~~~~~~~~~~~~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 160 (539)
T TIGR03389 82 IQPGQSYVYNFTITGQRGTLWWHAHISWLR-ATVYGAIVILPKPGVPYPFPKPDREVPIILGEWWNADVEAVINQANQTG 160 (539)
T ss_pred cCCCCeEEEEEEecCCCeeEEEecCchhhh-ccceEEEEEcCCCCCCCCCCCCCceEEEEecccccCCHHHHHHHHHhcC
Confidence 999999999999966899999999998766 599999999998765666667789999999999998665543 333344
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeE
Q 012003 188 VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (473)
Q Consensus 188 ~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (473)
....++|.++|||+......|. ....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|+.+++
T Consensus 161 ~~~~~~d~~liNG~~~~~~~~~----~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~VIa~DG~~~~P~~~~~ 236 (539)
T TIGR03389 161 GAPNVSDAYTINGHPGPLYNCS----SKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTVVEVDATYTKPFKTKT 236 (539)
T ss_pred CCCCccceEEECCCcCCCCCCC----CCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEEEEeCCcccCceEeCe
Confidence 4445779999999974322222 123478999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccccc
Q 012003 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRW 347 (473)
Q Consensus 268 v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 347 (473)
+.|++||||||+|++++++| +||||+.....+..........|+|+|+++.....+..+..+...+...... ...
T Consensus 237 l~i~~GqRydVlv~a~~~~g-~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~----~~~ 311 (539)
T TIGR03389 237 IVIGPGQTTNVLLTADQSPG-RYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATN----FSN 311 (539)
T ss_pred EEecCCCEEEEEEECCCCCc-eEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhH----HHh
Confidence 99999999999999998888 9999998654332112235689999998864321111111111001000000 000
Q ss_pred ccCCCCCCCCCCCCCccCccceeEEEEEecccc---------ccc-CCeEEEEecceeccCCCCchhhhhhcCCCCcccc
Q 012003 348 NVSAGAARPNPQGSFKYGQITVTDVYVILNRPA---------ELI-EGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKL 417 (473)
Q Consensus 348 ~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~---------~~~-~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~ 417 (473)
++........|.. . ...+++++.+..... ... ....+|+|||++|..|+.|+|.+.+.++.+.+..
T Consensus 312 ~l~~~~~~~~~~~---~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~ 387 (539)
T TIGR03389 312 KLRSLNSAQYPAN---V-PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTT 387 (539)
T ss_pred hcccccccCCCCC---C-CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCcccc
Confidence 1111100000100 0 012334333322110 011 2257899999999999999986655444443332
Q ss_pred CCCCCCC------------CCCCccceEEEeecCCcEEEEEEecCC---CCCCceeecCCccEEEeecCC
Q 012003 418 DFPYKLM------------SRAPKVDTSLINGTYKGFMEIIFQNND---TTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 418 ~~~~~p~------------~~~~~~~~~~~~~~~g~~Veivl~N~~---~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
++++.+. +-..+.+++++.+++|++|||+|+|.+ ...||||||||+|||||+|.|
T Consensus 388 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g 457 (539)
T TIGR03389 388 DFPANPPTKFNYTGTNLPNNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFG 457 (539)
T ss_pred CCccCCCccccCCCCCcccccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccC
Confidence 2222111 001234778999999999999999975 448999999999999999976
No 9
>PLN02191 L-ascorbate oxidase
Probab=100.00 E-value=6.5e-83 Score=673.10 Aligned_cols=445 Identities=28% Similarity=0.506 Sum_probs=328.3
Q ss_pred hHHHHHHHHHHHhhccccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee
Q 012003 10 SCVSFFFILLWLLNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW 88 (473)
Q Consensus 10 ~~~~~~~~~~~l~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~ 88 (473)
++++-++-++.++...+. +++++|+|+|++..++|||+++++++||||+|||+|++++||+|+|+|+|+|+ ++++|||
T Consensus 3 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~vt~~~~~pdG~~~~v~~vNg~~pGP~i~~~~Gd~v~v~v~N~l~~~~tsiHw 81 (574)
T PLN02191 3 MIVWWIVTVVAVLTHTAS-AAVREYTWEVEYKYWWPDCKEGAVMTVNGQFPGPTIDAVAGDTIVVHLTNKLTTEGLVIHW 81 (574)
T ss_pred EeehhHHHHHHHHHHhhc-cceEEEEEEEEEEEeccCCceeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEC
Confidence 345555555555443332 46899999999999999999999999999999999999999999999999998 7899999
Q ss_pred CCCCCCCCCCCCCCCC-CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEE
Q 012003 89 NGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITI 167 (473)
Q Consensus 89 HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l 167 (473)
||+++.+++|+||+++ |||||+||++|+|+|+++ ++||||||||.+.|+.+||+|+|||+++.+...++ .+|+|++|
T Consensus 82 HGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~-~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l 159 (574)
T PLN02191 82 HGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVE-KPGTHFYHGHYGMQRSAGLYGSLIVDVAKGPKERL-RYDGEFNL 159 (574)
T ss_pred CCCCCCCCccccCCCccccCCcCCCCeEEEEEECC-CCeEEEEeeCcHHHHhCCCEEEEEEccCCCCCCCC-CCCeeEEE
Confidence 9999999999999998 999999999999999995 89999999999999999999999999755432222 45899999
Q ss_pred EEeeceecchHHHHHhhh--CCCCCCCCCeEEEcCCCCCCCCCCcC--------------CCCCCceEEEEeCCcEEEEE
Q 012003 168 FISDWYTKSHKKLRKDVE--NGVDLGVPDGILINGLGPYRYDAAIV--------------PDGIPYQLINVEPGKTYRLR 231 (473)
Q Consensus 168 ~l~d~~~~~~~~~~~~~~--~~~~~~~~~~~liNG~~~~~~~~~~~--------------~~~~~~~~~~v~~G~~~rlR 231 (473)
+|+||++.........+. ......+++.+||||++++.|..+.. ...+.+.++++++||+||||
T Consensus 160 ~l~Dw~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~n~~~~p~~~~v~~G~~yRlR 239 (574)
T PLN02191 160 LLSDWWHESIPSQELGLSSKPMRWIGEAQSILINGRGQFNCSLAAQFSNGTELPMCTFKEGDQCAPQTLRVEPNKTYRIR 239 (574)
T ss_pred eeeccccCChHHHHHhhccCCCCcCCCCCceEECCCCCCCCcccccccCCcccccceeccCCCCCceEEEEcCCCEEEEE
Confidence 999999975433221111 11123567999999999988753210 01234457999999999999
Q ss_pred EeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEE
Q 012003 232 VHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVA 311 (473)
Q Consensus 232 liN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~a 311 (473)
|||+|+.+.+.|+|+||+|+|||+||.+++|..+++|.|++||||||+|+++++++++||||+.....+. ......|
T Consensus 240 iINa~~~~~~~~~idgH~~tVIa~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~y~ira~~~~~~~---~~~~~~a 316 (574)
T PLN02191 240 LASTTALASLNLAVQGHKLVVVEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQNYYISVGVRGRKP---NTTQALT 316 (574)
T ss_pred EEecCCceeEEEEECCCeEEEEEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCCEEEEEEccccCC---CCCCceE
Confidence 9999999999999999999999999999999999999999999999999999876449999997654321 1234579
Q ss_pred EEEecCCCCCC--CCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEE
Q 012003 312 ILHYSNSLGPA--SGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRT 389 (473)
Q Consensus 312 il~y~~~~~~~--~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~ 389 (473)
||+|.++.... +.+.|..|...+.. ........+......+.+. ....+.++.+.... ...+..+|
T Consensus 317 il~Y~~~~~~~~p~~~~~~~p~~~~~~----~~~~~~~~~~~~~~~~~~p------~~~~~~~~~~~~~~--~~~~~~~~ 384 (574)
T PLN02191 317 ILNYVTAPASKLPSSPPPVTPRWDDFE----RSKNFSKKIFSAMGSPSPP------KKYRKRLILLNTQN--LIDGYTKW 384 (574)
T ss_pred EEEECCCCCCCCCCCCCCCCCcccccc----hhhcccccccccccCCCCC------CcccceEEEecccc--eeCCeEEE
Confidence 99998754321 11111111100100 0001111110000001111 11234444443321 12456789
Q ss_pred EecceeccCCCCchhhhhhcCCCCccccCCCCC--CC---------CCCCccceEEEeecCCcEEEEEEecCC------C
Q 012003 390 TLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYK--LM---------SRAPKVDTSLINGTYKGFMEIIFQNND------T 452 (473)
Q Consensus 390 ~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~--p~---------~~~~~~~~~~~~~~~g~~Veivl~N~~------~ 452 (473)
+|||++|..|+.|+|++.+.+..+.|..+.+.. +. ....+.+++++.+++|++|||||+|.+ .
T Consensus 385 ~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~ 464 (574)
T PLN02191 385 AINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNANVLKGVVS 464 (574)
T ss_pred EECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECCCcccCCCC
Confidence 999999999999999877654444443211111 00 012345778999999999999999985 6
Q ss_pred CCCceeecCCccEEEeecCC
Q 012003 453 TVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 453 ~~HP~HLHGh~F~Vl~~g~~ 472 (473)
..||||||||+|||||+|.|
T Consensus 465 ~~HP~HLHGh~F~Vlg~G~g 484 (574)
T PLN02191 465 EIHPWHLHGHDFWVLGYGDG 484 (574)
T ss_pred CCCCEEeCCCCeEEEEecCC
Confidence 78999999999999999986
No 10
>PLN02604 oxidoreductase
Probab=100.00 E-value=8e-82 Score=666.22 Aligned_cols=435 Identities=31% Similarity=0.499 Sum_probs=327.7
Q ss_pred hhccccCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCC
Q 012003 22 LNGCFGGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQD 100 (473)
Q Consensus 22 ~~~~~a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~D 100 (473)
++.+.+.+++++|+|+|++..++|||+.+.+|+|||++|||+|++++||+|+|+|+|++ +++++|||||+++.+++|+|
T Consensus 15 ~~~~~~~~~~~~y~~~vt~~~~~pdG~~r~~~~~Ng~~pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~D 94 (566)
T PLN02604 15 LNFPAAEARIRRYKWEVKYEYKSPDCFKKLVITINGRSPGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFD 94 (566)
T ss_pred HHhhhccCcEEEEEEEEEEEEECCCCceeeEEEECCccCCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCcccc
Confidence 44556667899999999999999999999999999999999999999999999999998 58999999999999999999
Q ss_pred CCCC-CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH
Q 012003 101 GVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK 179 (473)
Q Consensus 101 Gv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~ 179 (473)
|+++ +||+|+||++++|+|++ +++||||||||.+.|+.+||+|+|||+++...+.++ .+|+|.+|+|+||+++...+
T Consensus 95 G~~~~tq~~i~pg~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~d~~l~l~Dw~~~~~~~ 172 (566)
T PLN02604 95 GTEGVTQCPILPGETFTYEFVV-DRPGTYLYHAHYGMQREAGLYGSIRVSLPRGKSEPF-SYDYDRSIILTDWYHKSTYE 172 (566)
T ss_pred CCCccccCccCCCCeEEEEEEc-CCCEEEEEeeCcHHHHhCCCeEEEEEEecCCCCCcc-ccCcceEEEeeccccCCHHH
Confidence 9998 99999999999999999 589999999999999999999999999876544455 35889999999999987654
Q ss_pred HHHhhhC--CCCCCCCCeEEEcCCCCCCCCCCc-----------CCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEe
Q 012003 180 LRKDVEN--GVDLGVPDGILINGLGPYRYDAAI-----------VPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQ 246 (473)
Q Consensus 180 ~~~~~~~--~~~~~~~~~~liNG~~~~~~~~~~-----------~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~ 246 (473)
....... .....+++.++|||++++.|.... ....+..+.+++++||+|||||||++..+.+.|+|+
T Consensus 173 ~~~~~~~~~~~~~~~~d~~liNG~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRlINa~~~~~~~~sid 252 (566)
T PLN02604 173 QALGLSSIPFDWVGEPQSLLIQGKGRYNCSLVSSPYLKAGVCNATNPECSPYVLTVVPGKTYRLRISSLTALSALSFQIE 252 (566)
T ss_pred HHHhhccCCCccCCCCCceEEcCCCCCCCccccCccccccccccCCCCCCceEEEecCCCEEEEEEEeccccceEEEEEC
Confidence 3322221 112246799999999998875321 011235568999999999999999999999999999
Q ss_pred CceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCC-
Q 012003 247 NHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGP- 325 (473)
Q Consensus 247 gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~- 325 (473)
||+|+|||+||.+++|..++.|.|++||||||+|++++++|++||||+.....+. ....++|||+|++.......+
T Consensus 253 gH~~~VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~~~~~~---~~~~~~aIL~Y~~~~~~~~~~~ 329 (566)
T PLN02604 253 GHNMTVVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSVVSRNN---TTPPGLAIFNYYPNHPRRSPPT 329 (566)
T ss_pred CCEEEEEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEecccCCC---CCcceeEEEEECCCCCCCCCCC
Confidence 9999999999999999999999999999999999999876548999987543321 236778999998643211111
Q ss_pred -CCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchh
Q 012003 326 -LPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLM 404 (473)
Q Consensus 326 -~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l 404 (473)
.+..+...+....++.... +......+ . ......++++.+..... ..++..+|+|||++|..|+.|+|
T Consensus 330 ~~~~~~~~~~~~~~~~~~~~----~~~~~~~~--~----~~~~~~d~~~~~~~~~~-~~~~~~~w~in~~~~~~p~~p~L 398 (566)
T PLN02604 330 VPPSGPLWNDVEPRLNQSLA----IKARHGYI--H----PPPLTSDRVIVLLNTQN-EVNGYRRWSVNNVSFNLPHTPYL 398 (566)
T ss_pred CCCCCCcccccchhhcchhc----ccccccCc--C----CCCCCCCeEEEEecccc-ccCCeEEEEECcccCCCCCCchh
Confidence 1111110000000110000 00000000 0 00123455555543221 23456799999999998999998
Q ss_pred hhhhcCCCCccccCC-CCCC-----------CCCCCccceEEEeecCCcEEEEEEecCC------CCCCceeecCCccEE
Q 012003 405 LAQQFNIPGAYKLDF-PYKL-----------MSRAPKVDTSLINGTYKGFMEIIFQNND------TTVQSYHMDGYAFFV 466 (473)
Q Consensus 405 ~~~~~~~~~~~~~~~-~~~p-----------~~~~~~~~~~~~~~~~g~~Veivl~N~~------~~~HP~HLHGh~F~V 466 (473)
++.+....+.|+.+. +..+ .....+.+.+++.++.|++|||||+|.+ ...||||||||+|||
T Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~~~~~~~HP~HLHGH~F~V 478 (566)
T PLN02604 399 IALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMNANNSETHPWHLHGHDFWV 478 (566)
T ss_pred HhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCccccCCCCCCCCEEecCCceEE
Confidence 776654456665211 1100 0112345678899999999999999984 457999999999999
Q ss_pred EeecCC
Q 012003 467 VGWQFP 472 (473)
Q Consensus 467 l~~g~~ 472 (473)
||+|.|
T Consensus 479 lg~G~G 484 (566)
T PLN02604 479 LGYGEG 484 (566)
T ss_pred EEecCC
Confidence 999976
No 11
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=100.00 E-value=3.1e-81 Score=659.88 Aligned_cols=425 Identities=31% Similarity=0.560 Sum_probs=320.1
Q ss_pred eEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-CCcc
Q 012003 31 YVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TNCP 108 (473)
Q Consensus 31 ~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~ 108 (473)
+|+|+|+|+++.++|||+.+.+|+|||++|||+|++++||+|+|+|+|+|. ++++|||||++|.+++||||+++ +||+
T Consensus 1 ~~~y~~~vt~~~~~pdG~~~~~~~~Ng~~pGP~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~ 80 (541)
T TIGR03388 1 IRHYKWEVEYEFWSPDCFEKLVIGINGQFPGPTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCA 80 (541)
T ss_pred CEEEEEEEEEEEecCCCeEeeEEEECCcCCCCeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCC
Confidence 478999999999999999999999999999999999999999999999985 88999999999999999999998 9999
Q ss_pred cCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhhC-C
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVEN-G 187 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~-~ 187 (473)
|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||+++..+..++ .+|+|++|+|+||+++...+....... .
T Consensus 81 I~PG~s~~y~f~~-~~~Gt~wyH~H~~~q~~~Gl~G~liV~~~~~~~~p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~ 158 (541)
T TIGR03388 81 INPGETFIYNFVV-DRPGTYFYHGHYGMQRSAGLYGSLIVDVPDGEKEPF-HYDGEFNLLLSDWWHKSIHEQEVGLSSKP 158 (541)
T ss_pred cCCCCEEEEEEEc-CCCEEEEEEecchHHhhccceEEEEEecCCCCCCCc-cccceEEEEeecccCCCHHHHHhhcccCC
Confidence 9999999999999 589999999999999999999999999886544444 358999999999999866443222211 1
Q ss_pred -CCCCCCCeEEEcCCCCCCCCCCcC-------------CCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEE
Q 012003 188 -VDLGVPDGILINGLGPYRYDAAIV-------------PDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV 253 (473)
Q Consensus 188 -~~~~~~~~~liNG~~~~~~~~~~~-------------~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 253 (473)
....+++.++|||++++.|..... ...+....+++++|++|||||||++..+.+.|+|+||+|+||
T Consensus 159 ~~~~~~~d~~liNG~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~VI 238 (541)
T TIGR03388 159 MRWIGEPQSLLINGRGQFNCSLAAKFSSTNLPQCNLKGNEQCAPQILHVEPGKTYRLRIASTTALAALNFAIEGHKLTVV 238 (541)
T ss_pred CcCCCCCcceEECCCCCCCCccccccCccccchhhccCCCCCCceEEEECCCCEEEEEEEcccccceEEEEECCCEEEEE
Confidence 122467899999999887754310 112344679999999999999999999999999999999999
Q ss_pred eecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCC--CCCCCCCC
Q 012003 254 ETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPAS--GPLPDPPN 331 (473)
Q Consensus 254 a~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~--~~~p~~p~ 331 (473)
|+||.+++|..++.+.|++||||||+|++++.++++||||+....... ......|||+|.++..... .+.|..+.
T Consensus 239 a~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~~~~~---~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~ 315 (541)
T TIGR03388 239 EADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVRGRKP---NTPPGLTVLNYYPNSPSRLPPTPPPVTPA 315 (541)
T ss_pred EeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecccCCC---CCccEEEEEEECCCCCCCCCCCCCCCCCC
Confidence 999999999999999999999999999999866548999997654321 2356789999987543211 11111121
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCC
Q 012003 332 AYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~ 411 (473)
..+.... ......+......+.|. ...++++.+..... ..++..+|+|||++|..|+.|+|.+.+.+.
T Consensus 316 ~~~~~~~----~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~-~~~~~~~~~~n~~s~~~p~~p~l~~~~~~~ 383 (541)
T TIGR03388 316 WDDFDRS----KAFSLAIKAAMGSPKPP-------ETSDRRIVLLNTQN-KINGYTKWAINNVSLTLPHTPYLGSLKYNL 383 (541)
T ss_pred ccccchh----hccchhhhccccCCCCC-------CCCCcEEEEeccCc-ccCceEEEEECcccCCCCCccHHHHHhhcC
Confidence 0010000 00000000000011111 13455554433221 134567899999999989999987775543
Q ss_pred CCccccCCC-----------CCCCCCCCccceEEEeecCCcEEEEEEecCC------CCCCceeecCCccEEEeecCC
Q 012003 412 PGAYKLDFP-----------YKLMSRAPKVDTSLINGTYKGFMEIIFQNND------TTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 412 ~~~~~~~~~-----------~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~------~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
.+.+..+.+ +.+.....+.|++++.++.|++|||||+|.+ ...||||||||+|||||+|.|
T Consensus 384 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~~~HP~HLHGh~F~vlg~g~g 461 (541)
T TIGR03388 384 LNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNSETHPWHLHGHDFWVLGYGEG 461 (541)
T ss_pred CccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCCCCCcEEecCCceEEEeeccC
Confidence 333321100 0111223456788999999999999999974 467999999999999999975
No 12
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=100.00 E-value=8.7e-81 Score=654.67 Aligned_cols=420 Identities=21% Similarity=0.360 Sum_probs=314.0
Q ss_pred EEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-CCcccC
Q 012003 33 FYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TNCPIP 110 (473)
Q Consensus 33 ~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 110 (473)
.|+|+|++..+++||+.|.+|+||||+|||+|++++||+|+|+|+|+|+ ++|+|||||++|+.++|+||+++ |||||+
T Consensus 10 ~~~l~v~~~~~~~~g~~r~~~~~NG~~PGP~I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~ 89 (538)
T TIGR03390 10 DHILRVTSDNIKIACSSRYSVVVNGTSPGPEIRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIP 89 (538)
T ss_pred cEEEEEEEeEeccCCeEEEEEEECCcCCCCeEEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCC
Confidence 5899999999999999999999999999999999999999999999997 89999999999999999999999 999999
Q ss_pred CCCceEEEEEEC-CCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhhCC--
Q 012003 111 AGWNWTYQFQVK-DQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENG-- 187 (473)
Q Consensus 111 PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~-- 187 (473)
||++|+|+|+++ +++||||||||.+.|+. ||+|+|||+++...+ + .+|+|++|+|+||+++...++...+...
T Consensus 90 PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~-~l~G~lIV~~~~~~~--~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~~~ 165 (538)
T TIGR03390 90 PGHFFDYEIKPEPGDAGSYFYHSHVGFQAV-TAFGPLIVEDCEPPP--Y-KYDDERILLVSDFFSATDEEIEQGLLSTPF 165 (538)
T ss_pred CCCcEEEEEEecCCCCeeeEEecCCchhhh-cceeEEEEccCCccC--C-CccCcEEEEEeCCCCCCHHHHHhhhhccCC
Confidence 999999999985 47999999999999987 599999999875433 3 3489999999999998776654332221
Q ss_pred CCCCCCCeEEEcCCCCCCCCCCc--CCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCce-eEEEeecCceeeeee
Q 012003 188 VDLGVPDGILINGLGPYRYDAAI--VPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN-LLLVETEGSYTVQQN 264 (473)
Q Consensus 188 ~~~~~~~~~liNG~~~~~~~~~~--~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~-~~via~DG~~~~p~~ 264 (473)
.....++.++|||++.+.|.... ....|..+.+++++||+|||||||+|..+.+.|+|+||+ |+|||+||.+++|..
T Consensus 166 ~~~~~~d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~VIa~DG~~~~P~~ 245 (538)
T TIGR03390 166 TWSGETEAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLTIIEADGSYTKPAK 245 (538)
T ss_pred ccCCCCceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEEEEEeCCCCCCceE
Confidence 11345789999999765542211 112356789999999999999999999999999999999 999999999999999
Q ss_pred eeEEEEcCCceEEEEEEeCCC-------CCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccc
Q 012003 265 YTNMDIHVGQSFSFLVTTDQN-------ASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYF 337 (473)
Q Consensus 265 ~d~v~l~pGeR~dv~v~~~~~-------~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~ 337 (473)
++++.|++||||||+|+++++ ++ +||||+.....++ .....|||+|.++........|..+.. ....
T Consensus 246 v~~l~l~~GqRydVlv~~~~~~~~~~~~~~-~Y~ir~~~~~~~~----~~~~~aiL~Y~~~~~~~~~~~p~~~~~-~~~~ 319 (538)
T TIGR03390 246 IDHLQLGGGQRYSVLFKAKTEDELCGGDKR-QYFIQFETRDRPK----VYRGYAVLRYRSDKASKLPSVPETPPL-PLPN 319 (538)
T ss_pred eCeEEEccCCEEEEEEECCCccccccCCCC-cEEEEEeecCCCC----cceEEEEEEeCCCCCCCCCCCCCCCCC-CccC
Confidence 999999999999999999975 36 9999997654332 256789999986543221111211100 0000
Q ss_pred ccccccccccccCCCCCC---CCCCCCCccCccceeEEEEEecccccc-cCCeEEEEecceeccC--CCCchhhhhhcCC
Q 012003 338 SMNQARSIRWNVSAGAAR---PNPQGSFKYGQITVTDVYVILNRPAEL-IEGKWRTTLNGISYLP--PSTPLMLAQQFNI 411 (473)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~---~~p~~~~~~~~~~~~~~~~l~~~~~~~-~~g~~~~~iN~~s~~~--p~~P~l~~~~~~~ 411 (473)
....+.+ ..+.+.... +.|. ...+++++.+....... .++..+|+|||++|.. |+.|+|.+.+.+.
T Consensus 320 ~~~~~~~--~~l~pl~~~~~~~~~~------~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~ 391 (538)
T TIGR03390 320 STYDWLE--YELEPLSEENNQDFPT------LDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENG 391 (538)
T ss_pred cchhhhh--eeeEecCccccCCCCC------CCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCC
Confidence 0000111 111111110 0111 12456777776654211 2467899999999985 7899987664321
Q ss_pred CCcccc-CCCCCCCCCCCccceEEEeecCCcEEEEEEecCC--------CCCCceeecCCccEEEeecCC
Q 012003 412 PGAYKL-DFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNND--------TTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 412 ~~~~~~-~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~--------~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
. ... .....+........++++.++.|++|||||+|.+ ...||||||||+|||||+|.|
T Consensus 392 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G 459 (538)
T TIGR03390 392 L--PATPNYTAALANYGFDPETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDG 459 (538)
T ss_pred C--CcCCCcccccccCCcCcCceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEccccc
Confidence 0 000 0000000111223567788999999999999974 478999999999999999976
No 13
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=100.00 E-value=1.6e-67 Score=553.80 Aligned_cols=262 Identities=27% Similarity=0.420 Sum_probs=223.3
Q ss_pred EEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccC
Q 012003 32 VFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIP 110 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~ 110 (473)
++|+|++++.++.++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++ .+.+||+|+ |||+|+
T Consensus 46 ~~~~L~v~~~~~~~~G~~~~~~~~Ng~~PGP~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DGvP~vt~~~I~ 123 (587)
T TIGR01480 46 TEFDLTIGETMVNFTGRARPAITVNGSIPGPLLRWREGDTVRLRVTNTLPEDTSIHWHGILL--PFQMDGVPGVSFAGIA 123 (587)
T ss_pred ceEEEEEEEEEEecCCeEEEEEEECCccCCceEEEECCCEEEEEEEcCCCCCceEEcCCCcC--CccccCCCcccccccC
Confidence 78999999999999999999999999999999999999999999999999999999999976 467999998 999999
Q ss_pred CCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhh-----
Q 012003 111 AGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE----- 185 (473)
Q Consensus 111 PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~----- 185 (473)
||++|+|+|+++ ++||||||||.+.|+++||+|+|||+++...+.. +|+|++|+|+||++....++...+.
T Consensus 124 PG~s~~Y~f~~~-~~GTyWYHsH~~~q~~~GL~G~lIV~~~~~~p~~---~D~E~vl~L~Dw~~~~p~~i~~~l~~~~~~ 199 (587)
T TIGR01480 124 PGETFTYRFPVR-QSGTYWYHSHSGFQEQAGLYGPLIIDPAEPDPVR---ADREHVVLLSDWTDLDPAALFRKLKVMAGH 199 (587)
T ss_pred CCCeEEEEEECC-CCeeEEEecCchhHhhccceEEEEECCCccccCC---CCceEEEEeeecccCCHHHHHHhhhccccc
Confidence 999999999995 7999999999999999999999999986544443 4899999999999865444321110
Q ss_pred -----------------CCCC--------C--------------CCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCc
Q 012003 186 -----------------NGVD--------L--------------GVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGK 226 (473)
Q Consensus 186 -----------------~~~~--------~--------------~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~ 226 (473)
.|.. . .....+||||+.. ...+++.+++|+
T Consensus 200 ~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~d~~dv~G~~~~~LiNG~~~-----------~~~~~~~v~~G~ 268 (587)
T TIGR01480 200 DNYYKRTVADFFRDVRNDGLKQTLADRKMWGQMRMTPTDLADVNGSTYTYLMNGTTP-----------AGNWTGLFRPGE 268 (587)
T ss_pred ccccccchhhhhhhhccccccccccccccccccccCCcccccccCccceEEEcCccC-----------CCCceEEECCCC
Confidence 0100 0 0012378999874 124678999999
Q ss_pred EEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCc
Q 012003 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNK 306 (473)
Q Consensus 227 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~ 306 (473)
+|||||||+|+.+.+.|+|+||+|+||++||++++|..++.+.|++||||||+|++++ .| .|+|++......
T Consensus 269 rvRLR~INas~~~~f~l~I~gh~m~VIa~DG~~v~Pv~vd~l~I~pGeRyDVlV~~~~-~g-~~~i~a~~~~~~------ 340 (587)
T TIGR01480 269 KVRLRFINGSAMTYFDVRIPGLKLTVVAVDGQYVHPVSVDEFRIAPAETFDVIVEPTG-DD-AFTIFAQDSDRT------ 340 (587)
T ss_pred EEEEEEEecCCCceEEEEECCCEEEEEEcCCcCcCceEeCeEEEcCcceeEEEEecCC-Cc-eEEEEEEecCCC------
Confidence 9999999999999999999999999999999999999999999999999999999873 46 899998765332
Q ss_pred cceEEEEEecCC
Q 012003 307 VTGVAILHYSNS 318 (473)
Q Consensus 307 ~~~~ail~y~~~ 318 (473)
....++|++.+.
T Consensus 341 ~~~~~~l~~~~~ 352 (587)
T TIGR01480 341 GYARGTLAVRLG 352 (587)
T ss_pred ceEEEEEecCCC
Confidence 356788888754
No 14
>PRK10965 multicopper oxidase; Provisional
Probab=100.00 E-value=6.8e-62 Score=507.56 Aligned_cols=244 Identities=23% Similarity=0.291 Sum_probs=207.0
Q ss_pred EEEEEEEEEEEecCCCce-EEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccC
Q 012003 32 VFYDWTISYVTASPLGDK-QQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIP 110 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~ 110 (473)
..|+|++++....++|.. ..+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++. +.+||+| ||+|+
T Consensus 46 ~~~~L~~~~~~~~~~~~~~t~~~~yNg~~PGPtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~--~~~DG~p--q~~I~ 121 (523)
T PRK10965 46 GRIQLTIQAGQSSFAGKTATATWGYNGNLLGPAVRLQRGKAVTVDITNQLPEETTLHWHGLEVP--GEVDGGP--QGIIA 121 (523)
T ss_pred ccEEEEEEEEEEEecCCceeEEEEECCCCCCceEEEECCCEEEEEEEECCCCCccEEcccccCC--CccCCCC--CCCCC
Confidence 468999999999987654 469999999999999999999999999999999999999999875 4599987 99999
Q ss_pred CCCceEEEEEECCCccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCC--CCCCceEEEEeeceecchHHHHHhh
Q 012003 111 AGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRKDV 184 (473)
Q Consensus 111 PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~ 184 (473)
||++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.+.+.+.+ ...+|++|+++||+++.+..+....
T Consensus 122 PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv~~GL~G~lIV~d~~~~~~~lp~~~~~~d~~lvlqD~~~~~~g~~~~~~ 201 (523)
T PRK10965 122 PGGKRTVTFTVDQPAATCWFHPHQHGKTGRQVAMGLAGLVLIEDDESLKLGLPKQWGVDDIPVILQDKRFSADGQIDYQL 201 (523)
T ss_pred CCCEEEEEeccCCCCceEEEecCCCCCcHHHHhCcCeEEEEEcCccccccCCcccCCCceeeEEEEeeeeCCCCceeccc
Confidence 999999999996558999999995 7999999999999999765433222 2456999999999997655432211
Q ss_pred hCC--CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE-eCceeEEEeecCcee-
Q 012003 185 ENG--VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSYT- 260 (473)
Q Consensus 185 ~~~--~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~- 260 (473)
+.. .....++.++|||+.. |.+.++ +++|||||||+|..+.+.|++ ++|+|+|||.||.++
T Consensus 202 ~~~~~~~g~~gd~~lVNG~~~--------------p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~vIa~DG~~l~ 266 (523)
T PRK10965 202 DVMTAAVGWFGDTLLTNGAIY--------------PQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLYVIASDGGLLA 266 (523)
T ss_pred cccccccCccCCeEEECCccc--------------ceeecC-CCEEEEEEEeccCCceEEEEEcCCceEEEEEeCCCccc
Confidence 111 1124578999999986 667775 679999999999999999998 899999999999886
Q ss_pred eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 261 VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 261 ~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+|..++++.|+|||||||+|++++ ++ +|++++..
T Consensus 267 ~P~~v~~l~lapGeR~dvlv~~~~-~~-~~~l~~~~ 300 (523)
T PRK10965 267 EPVKVSELPILMGERFEVLVDTSD-GK-AFDLVTLP 300 (523)
T ss_pred CccEeCeEEECccceEEEEEEcCC-Cc-eEEEEEec
Confidence 799999999999999999999985 45 89998754
No 15
>PRK10883 FtsI repressor; Provisional
Probab=100.00 E-value=1.9e-59 Score=485.11 Aligned_cols=240 Identities=20% Similarity=0.279 Sum_probs=201.0
Q ss_pred EEEEEEEEEEecCC-CceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCC
Q 012003 33 FYDWTISYVTASPL-GDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPA 111 (473)
Q Consensus 33 ~~~l~~~~~~~~~d-G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~P 111 (473)
.++|+++.....++ |..+.+|+|||++|||+|++++||+|+|+|+|+|+++|+|||||+++... .+||++ ++|+|
T Consensus 47 ~~~l~~~~~~~~~~~g~~~~v~~~ng~~pGPtir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~~~~-~~~g~~---~~I~P 122 (471)
T PRK10883 47 PLFLTLQRAHWSFTGGTKASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQVPGP-LMGGPA---RMMSP 122 (471)
T ss_pred cEEEEEEEeEEEecCCceeeEEEECCcccCCeEEEECCCEEEEEEEeCCCCCCceeECCccCCCC-CCCCcc---ccCCC
Confidence 37899999988887 46789999999999999999999999999999999999999999998754 567754 88999
Q ss_pred CCceEEEEEECCCccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCC--CCCCceEEEEeeceecchHHHHHhhh
Q 012003 112 GWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 112 G~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~~~~ 185 (473)
|++|+|+|++.+++||||||||. ..|+.+||+|+|||+++.+.+.+++ ....|++|+|+||..+........ .
T Consensus 123 G~~~~y~f~~~~~aGT~WYH~H~~~~t~~qv~~GL~G~lII~d~~~~~~~~p~~~~~~d~~l~l~D~~~~~~g~~~~~-~ 201 (471)
T PRK10883 123 NADWAPVLPIRQNAATCWYHANTPNRMAQHVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEYN-E 201 (471)
T ss_pred CCeEEEEEecCCCceeeEEccCCCCchhhhHhcCCeEEEEEeCCcccccCCcccCCCcceeEEeeeeeeccCCCcccc-c
Confidence 99999999986569999999995 3699999999999998765433332 234599999999998754432111 1
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE-eCceeEEEeecCcee-eee
Q 012003 186 NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSYT-VQQ 263 (473)
Q Consensus 186 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~-~p~ 263 (473)
.......++.++|||+.. |.+++++ ++|||||||+|..+.+.|++ ++|+|+|||.||.++ +|.
T Consensus 202 ~~~~g~~gd~~lvNG~~~--------------p~~~v~~-~~~RlRliNas~~~~~~l~l~d~~~~~vIa~DGg~~~~P~ 266 (471)
T PRK10883 202 PGSGGFVGDTLLVNGVQS--------------PYVEVSR-GWVRLRLLNASNARRYQLQMSDGRPLHVIAGDQGFLPAPV 266 (471)
T ss_pred cccCCccCCeeEECCccC--------------CeEEecC-CEEEEEEEEccCCceEEEEEcCCCeEEEEEeCCCcccCCc
Confidence 111235678999999986 7899987 48999999999999999999 899999999997765 799
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~ 294 (473)
.++++.|+|||||||+|++++ ++ .+.+.+
T Consensus 267 ~~~~l~l~pGeR~dvlVd~~~-~~-~~~l~~ 295 (471)
T PRK10883 267 SVKQLSLAPGERREILVDMSN-GD-EVSITA 295 (471)
T ss_pred EeCeEEECCCCeEEEEEECCC-Cc-eEEEEC
Confidence 999999999999999999975 34 676665
No 16
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=100.00 E-value=5.4e-50 Score=393.95 Aligned_cols=265 Identities=19% Similarity=0.169 Sum_probs=217.5
Q ss_pred ccCCCeEEEEEEEEEEEec-CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTAS-PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGV 102 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~-~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv 102 (473)
.+...+++|+|++++.+.. .+|+.+.+|+|||++|||+|++++||+|+|+|+|++. .++++||||.. ++||+
T Consensus 22 ~~~~~~~~~~l~a~~~~~~~~~G~~~~~~~~nG~~pGP~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~-----~~dg~ 96 (311)
T TIGR02376 22 RSGPKVVEVTMTIEEKKMVIDDGVTYQAMTFDGSVPGPLIRVHEGDYVELTLINPPTNTMPHNVDFHAAT-----GALGG 96 (311)
T ss_pred cCCCcEEEEEEEEEEEEEEeCCCeEEEEEEECCcccCceEEEECCCEEEEEEEeCCCCCCceeeeecCCC-----ccCCC
Confidence 3455678999999999887 5799999999999999999999999999999999986 58999999972 47888
Q ss_pred CC-CCcccCCCCceEEEEEECCCccceeeccC----hhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecch
Q 012003 103 LG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPS----LDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSH 177 (473)
Q Consensus 103 ~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~ 177 (473)
+. ++ |+||++++|+|+++ ++|||||||| +..|+.+||+|+|||++++..+ ..|+|++|+++||+++..
T Consensus 97 ~~~~~--I~PG~t~ty~F~~~-~~Gty~YH~H~~~~~~~q~~~Gl~G~liV~~~~~~~----~~d~e~~l~l~d~~~~~~ 169 (311)
T TIGR02376 97 AALTQ--VNPGETATLRFKAT-RPGAFVYHCAPPGMVPWHVVSGMNGAIMVLPREGLP----EYDKEYYIGESDLYTPKD 169 (311)
T ss_pred Cccee--ECCCCeEEEEEEcC-CCEEEEEEcCCCCchhHHhhcCcceEEEeeccCCCc----CcceeEEEeeeeEecccc
Confidence 76 65 99999999999994 8999999999 4689999999999999865322 448999999999999754
Q ss_pred HHHHHhhh-C-C-CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEe
Q 012003 178 KKLRKDVE-N-G-VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE 254 (473)
Q Consensus 178 ~~~~~~~~-~-~-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via 254 (473)
........ . . .....++.++|||+.... .+.+++++|+++||||+|++..+.+.|+++||.+++|+
T Consensus 170 ~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~~-----------~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~v~ 238 (311)
T TIGR02376 170 EGEGGAYEDDVAAMRTLTPTHVVFNGAVGAL-----------TGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDYVW 238 (311)
T ss_pred ccccccccchHHHHhcCCCCEEEECCccCCC-----------CCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceEEE
Confidence 32110000 0 0 012456899999996422 14578999999999999999988999999999999999
Q ss_pred ecCceeeeee--eeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 255 TEGSYTVQQN--YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 255 ~DG~~~~p~~--~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
.||.++.+.. ++++.|+||||+||+|++++ +| .|+++++...... .....|+|+|++..
T Consensus 239 ~DG~~~~~~~~~~~~~~i~PG~R~dv~v~~~~-pG-~y~~~~~~~~~~~----~~g~~~~i~~~g~~ 299 (311)
T TIGR02376 239 VTGKFANPPNRDVETWFIPGGSAAAALYTFEQ-PG-VYAYVDHNLIEAF----EKGAAAQVKVEGAW 299 (311)
T ss_pred ECCcccCCCCCCcceEEECCCceEEEEEEeCC-Ce-EEEEECcHHHHHH----hCCCEEEEEECCCC
Confidence 9999997644 89999999999999999996 68 9999987653221 13467999998754
No 17
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=100.00 E-value=2e-46 Score=389.54 Aligned_cols=229 Identities=24% Similarity=0.371 Sum_probs=191.1
Q ss_pred cCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccCCCCceEEEEEEC
Q 012003 44 SPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 44 ~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~ 122 (473)
..++.....|.+||++|||+|++++||+|+|+++|.|.+.|++||||+... +.+||++. +++++.||++++|.|+.+
T Consensus 46 ~~~~~~~~~~~~~g~~~gP~i~~~~Gd~v~l~~~N~l~~~t~vh~HG~~~p--~~~dG~~~~~~~~~~~~~~~~y~f~~~ 123 (451)
T COG2132 46 FAPGTGATVWGYNGALPGPTIRVKKGDTVTLDLTNRLLVDTSVHWHGLPVP--GEMDGVPPLTQIPPGPGETPTYTFTQD 123 (451)
T ss_pred eecCCCceeEEecccccCceEEEecCCEEEEEEEeCCCCCceEEEcCcccC--ccccCCCcccccCCCCCCcEEEeecCC
Confidence 345677889999999999999999999999999999988899999998654 78999987 999999999999999995
Q ss_pred CCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhhCCCCCCCCCeEEEcCCC
Q 012003 123 DQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLG 202 (473)
Q Consensus 123 ~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~ 202 (473)
++||||||+|.+.|+.+||+|++||++....+.. .|.+.++++.+|........... .........+..+|||..
T Consensus 124 -~~gT~wyh~H~~~Q~~~Gl~G~~II~~~~~~~~~---~d~~~~i~~~~~~~~~~~~~~~~-~~~~~~~~g~~~~vnG~~ 198 (451)
T COG2132 124 -VPGTYWYHPHTHGQVYDGLAGALIIEDENSEPLG---VDDEPVILQDDWLDEDGTDLYQE-GPAMGGFPGDTLLVNGAI 198 (451)
T ss_pred -CCcceEeccCCCchhhcccceeEEEeCCCCCCCC---CCceEEEEEeeeecCCCCccccC-CccccCCCCCeEEECCCc
Confidence 6889999999999999999999999998665443 47788888888876543332221 011123445789999966
Q ss_pred CCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEe
Q 012003 203 PYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282 (473)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~ 282 (473)
. +.+ ..++++|||||+|++..+.+.+++.+++|+||++||.++++..+|.+.|+|||||||++++
T Consensus 199 ~--------------p~~-~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~Vi~~DG~~v~~~~~d~~~l~p~er~~v~v~~ 263 (451)
T COG2132 199 L--------------PFK-AVPGGVVRLRLLNAGNARTYHLALGGGPLTVIAVDGGPLPPVSVDELYLAPGERYEVLVDM 263 (451)
T ss_pred c--------------cee-ecCCCeEEEEEEecCCceEEEEEecCceEEEEEeCCcCcCceeeeeEEecCcceEEEEEEc
Confidence 4 444 4455669999999997778888888999999999999998888999999999999999999
Q ss_pred CCCCCcceEEEEee
Q 012003 283 DQNASSDYYIVASP 296 (473)
Q Consensus 283 ~~~~g~~y~i~~~~ 296 (473)
++ ++ .+.+.+..
T Consensus 264 ~~-~~-~~~l~~~~ 275 (451)
T COG2132 264 ND-GG-AVTLTALG 275 (451)
T ss_pred CC-CC-eEEEEecc
Confidence 96 45 77777755
No 18
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=100.00 E-value=6.5e-38 Score=264.12 Aligned_cols=115 Identities=38% Similarity=0.766 Sum_probs=108.0
Q ss_pred EEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccCCCCce
Q 012003 37 TISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 37 ~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|++..+.++|..+++|+|||++|||+|++++||+|+|+|+|+++++++|||||+++...+++||+++ +||+|+||+++
T Consensus 1 ~v~~~~~~~~~~~~~~~~~ng~~pGPtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~ 80 (117)
T PF07732_consen 1 NVTETTVSPDGGTRKVWTYNGQFPGPTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESF 80 (117)
T ss_dssp -EEEEEEETTSTEEEEEEETTBSSEEEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEE
T ss_pred CeeEEEEEeCCcEEEEEEECCCCCCCEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecce
Confidence 47889999999889999999999999999999999999999999999999999999988889999998 99999999999
Q ss_pred EEEEEECCCccceeeccChhhhhcCCeeeEEEEEcC
Q 012003 116 TYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNR 151 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 151 (473)
+|+|++++++||||||||...|..+||+|+|||+++
T Consensus 81 ~Y~~~~~~~~Gt~wYH~H~~~~~~~GL~G~~iV~~~ 116 (117)
T PF07732_consen 81 TYEFTANQQAGTYWYHSHVHGQQVMGLYGAIIVEPP 116 (117)
T ss_dssp EEEEEESSCSEEEEEEECSTTHHHTTEEEEEEEE-T
T ss_pred eeeEeeeccccceeEeeCCCchhcCcCEEEEEEcCC
Confidence 999999755999999999988888999999999986
No 19
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=99.97 E-value=1.3e-29 Score=226.65 Aligned_cols=154 Identities=32% Similarity=0.527 Sum_probs=125.7
Q ss_pred CceEEEEeeceecchHHHHH-hhhCC----CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCC
Q 012003 163 GDITIFISDWYTKSHKKLRK-DVENG----VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGI 237 (473)
Q Consensus 163 ~e~~l~l~d~~~~~~~~~~~-~~~~~----~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~ 237 (473)
+|++|+++||+++....+.. .+..+ ...+.+++++|||++.++|.++.. ..+..+.+++++|++|||||||+|+
T Consensus 1 ~e~~i~l~DW~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~-~~~~~~~~~v~~g~~~rlRliNa~~ 79 (159)
T PF00394_consen 1 EEYVIMLSDWYHDDSDDLLQQYFAPGKGPMGMPPIPDSILINGKGRFDCSSADY-TGGEPPVIKVKPGERYRLRLINAGA 79 (159)
T ss_dssp GGGEEEEEEETSSCTTTHBH-HSSCHHHSHSCTSSCSEEEETTBTCBTTCTTGS-TTSTSGEEEEETTTEEEEEEEEESS
T ss_pred CeEEEEEeECCCCCHHHhhhhhccccccccCCCcCCcEEEECCccccccccccc-cccccceEEEcCCcEEEEEEEeccC
Confidence 47899999999987766543 22221 236789999999999998876532 3345799999999999999999999
Q ss_pred CceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecC
Q 012003 238 STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSN 317 (473)
Q Consensus 238 ~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~ 317 (473)
.+.+.|+|+||+|+|||+||.+++|..++++.|+|||||||+|++++++| +|||++.............+.+|+|+|++
T Consensus 80 ~~~~~~~i~gh~~~Via~DG~~v~p~~~~~l~l~~G~R~dvlv~~~~~~g-~y~i~~~~~~~~~~~~~~~~~~aiL~Y~~ 158 (159)
T PF00394_consen 80 STSFNFSIDGHPMTVIAADGVPVEPYKVDTLVLAPGQRYDVLVTADQPPG-NYWIRASYQHDSINDPQNGNALAILRYDG 158 (159)
T ss_dssp S-BEEEEETTBCEEEEEETTEEEEEEEESBEEE-TTEEEEEEEEECSCSS-EEEEEEEESSSSSHSHGGGTTEEEEEETT
T ss_pred CeeEEEEeeccceeEeeeccccccccccceEEeeCCeEEEEEEEeCCCCC-eEEEEEecccCCCccCCCcEEEEEEEECC
Confidence 99999999999999999999999999999999999999999999998677 99999973322222334578999999987
Q ss_pred C
Q 012003 318 S 318 (473)
Q Consensus 318 ~ 318 (473)
+
T Consensus 159 ~ 159 (159)
T PF00394_consen 159 A 159 (159)
T ss_dssp S
T ss_pred C
Confidence 4
No 20
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=99.81 E-value=1.2e-19 Score=158.68 Aligned_cols=104 Identities=14% Similarity=0.179 Sum_probs=83.2
Q ss_pred cCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC---CCceeeeCCCCCCCCCCCCCCCC-CCcccCCC---C-c-
Q 012003 44 SPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD---EPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAG---W-N- 114 (473)
Q Consensus 44 ~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~---~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG---~-~- 114 (473)
...+....-+.++| .++|+|++++||+|+|+|+|.++ ....||+||......+.|||++. ++|+|.|+ + .
T Consensus 35 ~~~~~~~~~f~~~~-~~~P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~~~~g~~~ 113 (148)
T TIGR03095 35 PMPGPSMYSFEIHD-LKNPTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPPPKSGKFG 113 (148)
T ss_pred cCCCCCceeEEecC-CCCCEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCCCCCCccc
Confidence 34567777788888 56899999999999999999954 44667777775544556999997 99998884 2 1
Q ss_pred -eEEEEEECCCccceeeccChhhhhcCCeeeEEEEE
Q 012003 115 -WTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 115 -~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
.+++|+++ ++||||||||...|+.+||+|+|||+
T Consensus 114 ~~~~tf~f~-~aGtywyhC~~pgH~~~GM~G~iiV~ 148 (148)
T TIGR03095 114 YTDFTYHFS-TAGTYWYLCTYPGHAENGMYGKIVVK 148 (148)
T ss_pred eeEEEEECC-CCeEEEEEcCChhHHHCCCEEEEEEC
Confidence 34566664 79999999999999999999999995
No 21
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=99.71 E-value=2.4e-17 Score=174.43 Aligned_cols=112 Identities=14% Similarity=0.192 Sum_probs=91.6
Q ss_pred CeEEEEEEEEEEEecCCCceEEEEEEcCCCCCc--eEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC---C
Q 012003 30 PYVFYDWTISYVTASPLGDKQQVIGINGQFPGP--ILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL---G 104 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP--~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~---~ 104 (473)
+.|++++.++. +..+.+|+|||+.+++ .|++++||+|+|+|.|.+.+++.|||||+..... ..||.. .
T Consensus 471 p~r~~~~~L~g------~m~~~~wtiNG~~~~~~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~-~~~G~~~~~~ 543 (587)
T TIGR01480 471 PGREIELHLTG------NMERFAWSFDGEAFGLKTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELE-DGQGEFQVRK 543 (587)
T ss_pred CCceEEEEEcC------CCceeEEEECCccCCCCCceEecCCCEEEEEEECCCCCCcceeEcCceeeee-cCCCcccccC
Confidence 34555555422 2467889999998874 7999999999999999999999999999976432 236642 2
Q ss_pred CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEE
Q 012003 105 TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 105 tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
.+..|+||++++|+|.+ +++|+||||||...|...||++.+.|.
T Consensus 544 dTv~V~Pg~t~~~~f~a-d~pG~w~~HCH~l~H~~~GM~~~~~v~ 587 (587)
T TIGR01480 544 HTVDVPPGGKRSFRVTA-DALGRWAYHCHMLLHMEAGMFREVTVR 587 (587)
T ss_pred CceeeCCCCEEEEEEEC-CCCeEEEEcCCCHHHHhCcCcEEEEeC
Confidence 24789999999999999 589999999999999999999999873
No 22
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=99.45 E-value=8e-13 Score=111.86 Aligned_cols=94 Identities=22% Similarity=0.151 Sum_probs=75.1
Q ss_pred cCCCeEEEEEEEE--EEEe---cCCCceEEEE-EEcCCCCCceEEEecCCEEEEEEEECCCCCc--eeeeCCCCCCCCCC
Q 012003 27 GGDPYVFYDWTIS--YVTA---SPLGDKQQVI-GINGQFPGPILNVTTNWNVVVNVKNDLDEPL--LLTWNGVQHRKNSW 98 (473)
Q Consensus 27 a~~~~~~~~l~~~--~~~~---~~dG~~~~~~-~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--siH~HG~~~~~~~~ 98 (473)
|.++.++|+++|. +.++ +..|+....+ ++|+++..+.|+|++||+|+++++|..+.++ .+++||+
T Consensus 20 ~~~~~~~f~~~i~~~~~~~~~~~~~~~~~~~i~a~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i~~~gi------- 92 (135)
T TIGR03096 20 AQAAEQSFTVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPEALVVKKGTPVKVTVENKSPISEGFSIDAYGI------- 92 (135)
T ss_pred hhhccceeEEEEeccccEeeEEEeCCEEEEEEEeeeeEEcCCEEEECCCCEEEEEEEeCCCCccceEECCCCc-------
Confidence 3334568999998 5544 5678877666 9999999999999999999999999876544 4555443
Q ss_pred CCCCCCCCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 99 QDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 99 ~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
+..|+||++.+|+|++ +++|+|||||-.+
T Consensus 93 -------s~~I~pGet~TitF~a-dKpG~Y~y~C~~H 121 (135)
T TIGR03096 93 -------SEVIKAGETKTISFKA-DKAGAFTIWCQLH 121 (135)
T ss_pred -------ceEECCCCeEEEEEEC-CCCEEEEEeCCCC
Confidence 2458999999999998 6899999999754
No 23
>PRK10965 multicopper oxidase; Provisional
Probab=99.21 E-value=2.6e-09 Score=112.62 Aligned_cols=232 Identities=14% Similarity=0.098 Sum_probs=138.4
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee-CCCCCCCCCCCCCCCC------CCcccCCCCceEEEEEE
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKNSWQDGVLG------TNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~~------tq~~I~PG~~~~Y~f~~ 121 (473)
...+++||+. .|.+.++ |.++++|+.|... ....+.+ .|.... -...||.+. ....|.|||+++..+++
T Consensus 212 gd~~lVNG~~-~p~~~v~-~~~~RlRliNas~~r~~~l~~~dg~~~~-vIa~DG~~l~~P~~v~~l~lapGeR~dvlv~~ 288 (523)
T PRK10965 212 GDTLLTNGAI-YPQHAAP-RGWLRLRLLNGCNARSLNLATSDGRPLY-VIASDGGLLAEPVKVSELPILMGERFEVLVDT 288 (523)
T ss_pred CCeEEECCcc-cceeecC-CCEEEEEEEeccCCceEEEEEcCCceEE-EEEeCCCcccCccEeCeEEECccceEEEEEEc
Confidence 3578999995 6888885 6699999999964 4446666 454322 245798542 23558999999999988
Q ss_pred CCCccceeeccChhhhhc------CCeeeEEEEEcCC--C-CCCC--------CCC----CCCceEEEEeecee------
Q 012003 122 KDQIGSFFYFPSLDFQRA------AGGYGGIIINNRD--V-IPLP--------FAV----PDGDITIFISDWYT------ 174 (473)
Q Consensus 122 ~~~~Gt~wYH~H~~~q~~------~Gl~G~liV~~~~--~-~~~~--------~~~----~~~e~~l~l~d~~~------ 174 (473)
+ +.|.++...-...+.. +.-+-.+.|.... . ...| .+. ..+++.+.+..+..
T Consensus 289 ~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~l~~~~~~~~~~~~~~r~~~l~~~~~~~~~~m~~ 367 (523)
T PRK10965 289 S-DGKAFDLVTLPVSQMGMALAPFDKPLPVLRIQPLLISASGTLPDSLASLPALPSLEGLTVRRLQLSMDPRLDMMGMQM 367 (523)
T ss_pred C-CCceEEEEEecccCcccccccCCCceeEEEEeccCcCCCCcCChhhccCCCCCcccccceeEEEEeeccccchhhhhh
Confidence 5 4677766543211110 0011123333111 0 0010 000 00122332221100
Q ss_pred ----cchHHHHH--------h--------hhCC----CC-CCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEE
Q 012003 175 ----KSHKKLRK--------D--------VENG----VD-LGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYR 229 (473)
Q Consensus 175 ----~~~~~~~~--------~--------~~~~----~~-~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~r 229 (473)
........ . +..+ .. ......++|||+.+. ...+.++++.|++.+
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~~----------~~~~~~~~~~G~~e~ 437 (523)
T PRK10965 368 LMEKYGDQAMAGMDMDHMMGHMGHGNMDHMNHGAADAGPAFDFHHANKINGKAFD----------MNKPMFAAKKGQYER 437 (523)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccCCCeECC----------CCCcceecCCCCEEE
Confidence 00000000 0 0000 00 000112489999862 123668899999999
Q ss_pred EEEeEeCCCceeEEEEeCceeEEEeecCceeee---eeeeEEEEcCCceEEEEEEeCCC---CCcceEEEEeec
Q 012003 230 LRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ---QNYTNMDIHVGQSFSFLVTTDQN---ASSDYYIVASPR 297 (473)
Q Consensus 230 lRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~~~d~v~l~pGeR~dv~v~~~~~---~g~~y~i~~~~~ 297 (473)
|+|+|.+....|.|||||+.|+|++.||.+..+ ...|+|.+.+ ++..++++++++ +| .|...++..
T Consensus 438 w~i~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~wkDTv~v~~-~~~~i~~~f~~~~~~~g-~~~~HCHiL 509 (523)
T PRK10965 438 WVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVRVEG-GRSEVLVKFDHDAPKEH-AYMAHCHLL 509 (523)
T ss_pred EEEEeCCCCCccCeEEeCcEEEEEEecCCCCCccccccccEEEECC-cEEEEEEEecCCCCCCC-CEEEEeCch
Confidence 999999865579999999999999999987653 4689999976 889999999853 35 677777654
No 24
>PLN02835 oxidoreductase
Probab=99.13 E-value=5.8e-09 Score=110.40 Aligned_cols=243 Identities=12% Similarity=0.125 Sum_probs=147.0
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECC
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~ 123 (473)
...+++||+. .|++++++|+++++|+.|... ....+|..|.... ..+.||.+. ....|.|||+++..+++.+
T Consensus 191 ~d~~liNG~~-~~~~~v~~G~~yRlRliNa~~~~~~~f~i~gH~~~-VI~~DG~~v~p~~~~~l~i~~GqRydvlv~~~~ 268 (539)
T PLN02835 191 PDGVLINGQT-QSTFSGDQGKTYMFRISNVGLSTSLNFRIQGHTMK-LVEVEGSHTIQNIYDSLDVHVGQSVAVLVTLNQ 268 (539)
T ss_pred CceEEEcccc-CceEEECCCCEEEEEEEEcCCCccEEEEECCCEEE-EEEECCccCCCceeeEEEECcCceEEEEEEcCC
Confidence 3578999997 489999999999999999965 5678999998764 356899864 1245899999999999965
Q ss_pred CccceeeccChhhh-hcCCeeeEEEEEcCCC---CCCCC-CCCCC--c------eEEEEeeceecchHH----H-----H
Q 012003 124 QIGSFFYFPSLDFQ-RAAGGYGGIIINNRDV---IPLPF-AVPDG--D------ITIFISDWYTKSHKK----L-----R 181 (473)
Q Consensus 124 ~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~---~~~~~-~~~~~--e------~~l~l~d~~~~~~~~----~-----~ 181 (473)
.+|.||.+.-.... ......+.|-.++... .+.+. +..+. + ....+.......... . .
T Consensus 269 ~~g~y~i~a~~~~~~~~~~~~ail~Y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~~~ 348 (539)
T PLN02835 269 SPKDYYIVASTRFTRQILTATAVLHYSNSRTPASGPLPALPSGELHWSMRQARTYRWNLTASAARPNPQGSFHYGKITPT 348 (539)
T ss_pred CCCcEEEEEEccccCCCcceEEEEEECCCCCCCCCCCCCCCccccccccchhhccccccCccccCCCCCccccccccCCC
Confidence 58999998532111 1111233333322111 01111 00000 0 000011000000000 0 0
Q ss_pred Hh--hhCCCC-CCCCCeEEEcCCCCCCCCCCc-------------------CCCCC----CceEEEEeCCcEEEEEEeEe
Q 012003 182 KD--VENGVD-LGVPDGILINGLGPYRYDAAI-------------------VPDGI----PYQLINVEPGKTYRLRVHNV 235 (473)
Q Consensus 182 ~~--~~~~~~-~~~~~~~liNG~~~~~~~~~~-------------------~~~~~----~~~~~~v~~G~~~rlRliN~ 235 (473)
.. +..... ......+.+||..+..-.... ...++ ....+.++.|+.+.|-|-|.
T Consensus 349 ~~~~~~~~~~~~~g~~~w~iN~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~~~~Veivi~N~ 428 (539)
T PLN02835 349 KTIVLANSAPLINGKQRYAVNGVSYVNSDTPLKLADYFGIPGVFSVNSIQSLPSGGPAFVATSVMQTSLHDFLEVVFQNN 428 (539)
T ss_pred ceEEEeccccccCCeEEEEECCcccCCCCCChhhhhhhcCCCccccCccccCCCCCccccCCeEEEcCCCCEEEEEEECC
Confidence 00 000000 000135778988753210000 00110 13456778899999999998
Q ss_pred CCCceeEEEEeCceeEEEee-cCce----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 236 GISTSLNFRIQNHNLLLVET-EGSY----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 236 ~~~~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
... .|.||+|||.|+|++. +|.+ ..|...|++.+.+++..-+-+++|+ || -+.++++..
T Consensus 429 ~~~-~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~nl~nP~~RDTv~vp~~gw~~IrF~aDN-PG-~Wl~HCHi~ 498 (539)
T PLN02835 429 EKT-MQSWHLDGYDFWVVGYGSGQWTPAKRSLYNLVDALTRHTAQVYPKSWTTILVSLDN-QG-MWNMRSAIW 498 (539)
T ss_pred CCC-CCCCCCCCccEEEEeccCCCCCcccccccCCCCCCccceEEeCCCCEEEEEEECcC-CE-Eeeeeecch
Confidence 654 8999999999999987 6633 2378899999999999999999995 67 566777764
No 25
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=99.10 E-value=1.4e-08 Score=108.15 Aligned_cols=246 Identities=11% Similarity=0.109 Sum_probs=144.0
Q ss_pred EEEEEcCCC-C--------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCce
Q 012003 51 QVIGINGQF-P--------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNW 115 (473)
Q Consensus 51 ~~~~~Ng~~-p--------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~ 115 (473)
..+++||+. + -++|.+++|+++++||.|... ....+|.+|..+.. .+.||++. ....|.|||++
T Consensus 167 d~~liNG~~~~~~~~~~~~~~~i~v~~G~~~RlRlINa~~~~~~~~~idgH~~~V-Ia~DG~~~~P~~~~~l~i~~GqRy 245 (539)
T TIGR03389 167 DAYTINGHPGPLYNCSSKDTFKLTVEPGKTYLLRIINAALNDELFFAIANHTLTV-VEVDATYTKPFKTKTIVIGPGQTT 245 (539)
T ss_pred ceEEECCCcCCCCCCCCCCceEEEECCCCEEEEEEEeccCCceEEEEECCCeEEE-EEeCCcccCceEeCeEEecCCCEE
Confidence 568999984 1 148999999999999999964 45678888887543 56899863 23568999999
Q ss_pred EEEEEECCCccceeeccChhh--h--hc-CCeeeEEEEEcCCCCCCCC----CCCCC---------ceE-EEEeeceec-
Q 012003 116 TYQFQVKDQIGSFFYFPSLDF--Q--RA-AGGYGGIIINNRDVIPLPF----AVPDG---------DIT-IFISDWYTK- 175 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~--q--~~-~Gl~G~liV~~~~~~~~~~----~~~~~---------e~~-l~l~d~~~~- 175 (473)
+..+++.+.+|.||.+.+... + .. ..-.+.|...+......+. +..+. +.. +....+...
T Consensus 246 dVlv~a~~~~g~y~i~~~~~~~~~~~~~~~~~~ail~Y~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 325 (539)
T TIGR03389 246 NVLLTADQSPGRYFMAARPYMDAPGAFDNTTTTAILQYKGTSNSAKPILPTLPAYNDTAAATNFSNKLRSLNSAQYPANV 325 (539)
T ss_pred EEEEECCCCCceEEEEEeccccCccCCCCcceEEEEEECCCCCCCCCCCCCCCCCCchhhhhHHHhhcccccccCCCCCC
Confidence 999999544899999987421 1 11 1122333332221111110 00000 000 000000000
Q ss_pred ---chHH----HHHhhhCCC-----C-CCCCCeEEEcCCCCCCCCC--------------------C-c---C--CC---
Q 012003 176 ---SHKK----LRKDVENGV-----D-LGVPDGILINGLGPYRYDA--------------------A-I---V--PD--- 213 (473)
Q Consensus 176 ---~~~~----~~~~~~~~~-----~-~~~~~~~liNG~~~~~~~~--------------------~-~---~--~~--- 213 (473)
.+.. +........ . ....-.+.|||..+..-.. . . . +.
T Consensus 326 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~in~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 405 (539)
T TIGR03389 326 PVTIDRRLFFTIGLGLDPCPNNTCQGPNGTRFAASMNNISFVMPTTALLQAHYFGISGVFTTDFPANPPTKFNYTGTNLP 405 (539)
T ss_pred CCCCCeEEEEEeecccccCcccccccCCCcEEEEEECCcccCCCCcchhhhhhcccCCccccCCccCCCccccCCCCCcc
Confidence 0000 000000000 0 0001135788876321000 0 0 0 00
Q ss_pred -C----CCceEEEEeCCcEEEEEEeEeCC--CceeEEEEeCceeEEEeec-Cce-----------eeeeeeeEEEEcCCc
Q 012003 214 -G----IPYQLINVEPGKTYRLRVHNVGI--STSLNFRIQNHNLLLVETE-GSY-----------TVQQNYTNMDIHVGQ 274 (473)
Q Consensus 214 -~----~~~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGe 274 (473)
+ .....+.++.|+++++.|.|.+. ...|.||+|||.|+|++.+ |.+ ..|...|++.+.++.
T Consensus 406 ~~~~~~~~~~v~~~~~~~~V~ivi~n~~~~~~~~HP~HLHGh~F~Vlg~g~g~~~~~~~~~~~nl~nP~rRDTv~vp~~g 485 (539)
T TIGR03389 406 NNLFTTNGTKVVRLKFNSTVELVLQDTSILGSENHPIHLHGYNFFVVGTGFGNFDPKKDPAKFNLVDPPERNTVGVPTGG 485 (539)
T ss_pred cccccccCceEEEecCCCEEEEEEecCCcCCCCCCcEeEcCCceEEEEeccCCCCcccCccccccCCCCeeeeEEcCCCc
Confidence 0 01245889999999999999753 2379999999999999886 332 136678999999999
Q ss_pred eEEEEEEeCCCCCcceEEEEeeccc
Q 012003 275 SFSFLVTTDQNASSDYYIVASPRFV 299 (473)
Q Consensus 275 R~dv~v~~~~~~g~~y~i~~~~~~~ 299 (473)
..-|-+++++ || -+.+.++...-
T Consensus 486 ~vvirf~adN-PG-~W~~HCHi~~H 508 (539)
T TIGR03389 486 WAAIRFVADN-PG-VWFMHCHLEVH 508 (539)
T ss_pred eEEEEEecCC-Ce-EEEEEecccch
Confidence 9999999995 67 56677776543
No 26
>PRK10883 FtsI repressor; Provisional
Probab=99.07 E-value=5.8e-09 Score=108.87 Aligned_cols=222 Identities=13% Similarity=0.059 Sum_probs=131.4
Q ss_pred ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee-CCCCCCCCCCCCCCCC------CCcccCCCCceEEEE
Q 012003 48 DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKNSWQDGVLG------TNCPIPAGWNWTYQF 119 (473)
Q Consensus 48 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~~~DGv~~------tq~~I~PG~~~~Y~f 119 (473)
....++++||+. .|.|.|+.| ++++|+.|... ....+++ .|.... -...||.+. .+..|.|||+++.-.
T Consensus 207 ~~gd~~lvNG~~-~p~~~v~~~-~~RlRliNas~~~~~~l~l~d~~~~~-vIa~DGg~~~~P~~~~~l~l~pGeR~dvlV 283 (471)
T PRK10883 207 FVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNARRYQLQMSDGRPLH-VIAGDQGFLPAPVSVKQLSLAPGERREILV 283 (471)
T ss_pred ccCCeeEECCcc-CCeEEecCC-EEEEEEEEccCCceEEEEEcCCCeEE-EEEeCCCcccCCcEeCeEEECCCCeEEEEE
Confidence 344678999995 689999875 89999999975 4567887 565332 245785432 235689999999999
Q ss_pred EECCCccceeeccChhhhhcCCeeeE------------EEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHH-hhhC
Q 012003 120 QVKDQIGSFFYFPSLDFQRAAGGYGG------------IIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRK-DVEN 186 (473)
Q Consensus 120 ~~~~~~Gt~wYH~H~~~q~~~Gl~G~------------liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~-~~~~ 186 (473)
++. +.+.+..++-......+++.+. +-++...... +. .......+............. .+..
T Consensus 284 d~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~p~~l~~~~~~~~~~~~~~~~~l 358 (471)
T PRK10883 284 DMS-NGDEVSITAGEAAGIVDRLRGFFEPSSILVSTLVLTLRPTGLLP-LV---TDNLPMRLLPDEIMEGSPIRSREISL 358 (471)
T ss_pred ECC-CCceEEEECCCccccccccccccCCccccccceeEEEEcccccc-CC---CCcCChhhcCCCCCCCCCcceEEEEe
Confidence 984 4566666653211110111111 1111111000 00 000000000000000000000 0000
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeee---e
Q 012003 187 GVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ---Q 263 (473)
Q Consensus 187 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~ 263 (473)
+ .+.+.|||+.+.. ....+.++.|++.+|+|.|. ..|.||||+|.|+|++.||....+ .
T Consensus 359 ~-----~~~~~INg~~~~~----------~~~~~~~~~g~~e~W~~~n~---~~HP~HlHg~~FqVl~~~G~~~~~~~~g 420 (471)
T PRK10883 359 G-----DDLPGINGALWDM----------NRIDVTAQQGTWERWTVRAD---MPQAFHIEGVMFLIRNVNGAMPFPEDRG 420 (471)
T ss_pred c-----CCcCccCCcccCC----------CcceeecCCCCEEEEEEECC---CCcCEeECCccEEEEEecCCCCCccccC
Confidence 0 1234799998621 22457899999999999885 269999999999999999986533 3
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCc--ceEEEEeec
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASS--DYYIVASPR 297 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~--~y~i~~~~~ 297 (473)
..|+|.+ + +++.|++++++..++ .|...++..
T Consensus 421 wkDTV~v-~-~~v~i~~~f~~~~~~~~~~m~HCHiL 454 (471)
T PRK10883 421 WKDTVWV-D-GQVELLVYFGQPSWAHFPFLFYSQTL 454 (471)
T ss_pred cCcEEEc-C-CeEEEEEEecCCCCCCCcEEeecccc
Confidence 4799999 4 579999999976542 466666654
No 27
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=99.04 E-value=2.7e-10 Score=99.26 Aligned_cols=89 Identities=16% Similarity=0.245 Sum_probs=73.1
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCC-------------CC--CCcccCCCCceEEEEEECCCc
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV-------------LG--TNCPIPAGWNWTYQFQVKDQI 125 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv-------------~~--tq~~I~PG~~~~Y~f~~~~~~ 125 (473)
.+.+.++.|+.+++++.|.....+.+|+||.........++. +. ....|+||+..+.+|.+ +.+
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~-~~~ 111 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSMPHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRA-DNP 111 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTSSEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEE-TST
T ss_pred cceEEEeCCCEEEEEEECCCCCccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEe-ecc
Confidence 579999999999999999999999999999876422111111 11 23558999999999999 589
Q ss_pred cceeeccChhhhhcCCeeeEEEEEc
Q 012003 126 GSFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 126 Gt~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
|.|.||||...+..+||.+.+.|.+
T Consensus 112 G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 112 GPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEEEEESSHHHHHTT-EEEEEECH
T ss_pred eEEEEEEchHHHHhCCCeEEEEEcC
Confidence 9999999999999999999999976
No 28
>PLN02354 copper ion binding / oxidoreductase
Probab=98.86 E-value=1.5e-07 Score=99.84 Aligned_cols=243 Identities=12% Similarity=0.086 Sum_probs=143.8
Q ss_pred EEEEEcCCCC------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEE
Q 012003 51 QVIGINGQFP------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQ 118 (473)
Q Consensus 51 ~~~~~Ng~~p------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~ 118 (473)
..+++||+.. -|+|.+++|+++++||.|... ....+|..|..+. ..+.||++. ....|.|||+++..
T Consensus 190 d~~liNG~~~~~~~~~~~~~~v~~Gk~yRlRiINa~~~~~~~f~IdgH~~t-VIa~DG~~v~p~~~~~l~i~~GqRydVl 268 (552)
T PLN02354 190 DGVLINGKSGKGDGKDEPLFTMKPGKTYRYRICNVGLKSSLNFRIQGHKMK-LVEMEGSHVLQNDYDSLDVHVGQCFSVL 268 (552)
T ss_pred CeEEEeCCcCCCCCCCceEEEECCCCEEEEEEEecCCCceEEEEECCceEE-EEEeCCcccCCcceeEEEEccCceEEEE
Confidence 5689999842 379999999999999999964 5578888888764 367899874 23459999999999
Q ss_pred EEECCCccceeeccChhhh-hcCCeeeEEEEEcCCCCC-CCCCCCCCceEEEE---eecee-------cch--H------
Q 012003 119 FQVKDQIGSFFYFPSLDFQ-RAAGGYGGIIINNRDVIP-LPFAVPDGDITIFI---SDWYT-------KSH--K------ 178 (473)
Q Consensus 119 f~~~~~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~~~-~~~~~~~~e~~l~l---~d~~~-------~~~--~------ 178 (473)
+++.+.+|.||........ ....-.+.|..++..... ...+....+..... .+... ... .
T Consensus 269 v~a~~~~g~Y~i~a~~~~~~~~~~~~ail~Y~g~~~~~~~~~p~~~~~~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~ 348 (552)
T PLN02354 269 VTANQAPKDYYMVASTRFLKKVLTTTGIIRYEGGKGPASPELPEAPVGWAWSLNQFRSFRWNLTASAARPNPQGSYHYGK 348 (552)
T ss_pred EECCCCCCcEEEEEeccccCCCccEEEEEEECCCCCCCCCCCCCCCcccccchhhhhhhhhcccccccCCCCCCcccccc
Confidence 9996558999998874211 111123333332221100 00110000000000 00000 000 0
Q ss_pred -HHHHh--hhCCC-CCCCCCeEEEcCCCCCCCCCC-c--------CCC-----------------CCCceEEEEeCCcEE
Q 012003 179 -KLRKD--VENGV-DLGVPDGILINGLGPYRYDAA-I--------VPD-----------------GIPYQLINVEPGKTY 228 (473)
Q Consensus 179 -~~~~~--~~~~~-~~~~~~~~liNG~~~~~~~~~-~--------~~~-----------------~~~~~~~~v~~G~~~ 228 (473)
.+... +.... .......+.|||..+..-... + .+. ......+.++.|+.+
T Consensus 349 ~~~~~~~~~~~~~~~~~g~~~~~iNn~s~~~p~~P~L~~~~~~~~~g~~~~~~~~~~pp~~~~~~~~~~~v~~~~~~~~V 428 (552)
T PLN02354 349 INITRTIKLVNSASKVDGKLRYALNGVSHVDPETPLKLAEYFGVADKVFKYDTIKDNPPAKITKIKIQPNVLNITFRTFV 428 (552)
T ss_pred ccccceEEEecccccCCceEEEEECCccCCCCCCChHHhhhhcccCCccccCccccCCccccCccccCCeeEEcCCCCEE
Confidence 00000 00000 000012467888774311000 0 000 011245678889999
Q ss_pred EEEEeEeCCCceeEEEEeCceeEEEeec-Cc----------eeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 229 RLRVHNVGISTSLNFRIQNHNLLLVETE-GS----------YTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 229 rlRliN~~~~~~~~~~i~gh~~~via~D-G~----------~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.+-|.|.... .|.||+|||.|+|++.- |. +..|...|++.+.++.-.-+-+++|+ || -+.++++..
T Consensus 429 eiVi~n~~~~-~HP~HLHGh~F~Vlg~G~G~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-vW~~HCHi~ 505 (552)
T PLN02354 429 EIIFENHEKS-MQSWHLDGYSFFAVAVEPGTWTPEKRKNYNLLDAVSRHTVQVYPKSWAAILLTFDN-AG-MWNIRSENW 505 (552)
T ss_pred EEEEeCCCCC-CCCCcCCCccEEEEeecCCCCCccccccCCcCCCCccceEEeCCCCeEEEEEEecC-Ce-EEeeecccc
Confidence 9999987543 89999999999999763 21 23478899999999999999999995 67 566777763
No 29
>COG2132 SufI Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.85 E-value=7.3e-08 Score=100.74 Aligned_cols=231 Identities=13% Similarity=0.015 Sum_probs=143.1
Q ss_pred CceEEEEEEcCCCCCceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEE
Q 012003 47 GDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 47 G~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~ 120 (473)
|.......+||+. -| +.+.++..+++|+.|.- .....+++.|..... ...||.+. .+..+.|||+++....
T Consensus 186 ~~~g~~~~vnG~~-~p-~~~~~~g~~rlRl~n~~~~~~~~~~~~~~~~~V-i~~DG~~v~~~~~d~~~l~p~er~~v~v~ 262 (451)
T COG2132 186 GFPGDTLLVNGAI-LP-FKAVPGGVVRLRLLNAGNARTYHLALGGGPLTV-IAVDGGPLPPVSVDELYLAPGERYEVLVD 262 (451)
T ss_pred CCCCCeEEECCCc-cc-eeecCCCeEEEEEEecCCceEEEEEecCceEEE-EEeCCcCcCceeeeeEEecCcceEEEEEE
Confidence 4455666778844 24 45555566999999997 566677777665432 44677662 4567999999999988
Q ss_pred ECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeec-eecchHHHHHhh-hCC----C-----C
Q 012003 121 VKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDW-YTKSHKKLRKDV-ENG----V-----D 189 (473)
Q Consensus 121 ~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~-~~~~~~~~~~~~-~~~----~-----~ 189 (473)
.. ..|++-+.|.. .+..+-+.+..-...... .++...+.+......|- ...........+ +.+ . .
T Consensus 263 ~~-~~~~~~l~~~~-~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 338 (451)
T COG2132 263 MN-DGGAVTLTALG-EDMPDTLKGFRAPNPILT--PSYPVLNGRVGAPTGDMADHAPVGLLVTILVEPGPNRDTDFHLIG 338 (451)
T ss_pred cC-CCCeEEEEecc-ccCCceeeeeeccccccc--cccccccccccCCCcchhhccccccchhhcCCCcccccccchhhc
Confidence 85 47889898887 222222223222211110 11111111111111110 110000000000 011 0 0
Q ss_pred CCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee--eeeeeeE
Q 012003 190 LGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT--VQQNYTN 267 (473)
Q Consensus 190 ~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~p~~~d~ 267 (473)
......+.+||+.+.. ....+.++.|+++||++.|-+. -.|.||+||+.|+|++.|...- .+...|+
T Consensus 339 ~~~~~~~~~n~~~~~~----------~~~~~~~~~G~~~~~~i~n~~~-~~HP~HlHg~~F~v~~~~~~~~~~~~~~kDT 407 (451)
T COG2132 339 GIGGYVWAINGKAFDD----------NRVTLIAKAGTRERWVLTNDTP-MPHPFHLHGHFFQVLSGDAPAPGAAPGWKDT 407 (451)
T ss_pred ccccccccccCccCCC----------CcCceeecCCCEEEEEEECCCC-CccCeEEcCceEEEEecCCCcccccCccceE
Confidence 0112458888888731 2477899999999999999997 5899999999999999992211 2466899
Q ss_pred EEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 268 v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
+.+.|++|..+.++++. +| .|.+.++..
T Consensus 408 v~v~~~~~~~v~~~a~~-~g-~~~~HCH~l 435 (451)
T COG2132 408 VLVAPGERLLVRFDADY-PG-PWMFHCHIL 435 (451)
T ss_pred EEeCCCeEEEEEEeCCC-CC-ceEEeccch
Confidence 99999999999999994 67 888887764
No 30
>PLN02168 copper ion binding / pectinesterase
Probab=98.80 E-value=4.9e-07 Score=95.73 Aligned_cols=240 Identities=14% Similarity=0.152 Sum_probs=142.4
Q ss_pred EEEEEcCCCC-CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECC
Q 012003 51 QVIGINGQFP-GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 51 ~~~~~Ng~~p-gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~ 123 (473)
..+++||+.+ .|+|++++|+++++|+.|... ....++..|..+.. ...||.+. .+..|.|||+++..+++.+
T Consensus 189 d~~liNG~~~~~~~~~v~~G~~yRlRiiNa~~~~~~~~~IdgH~~tV-Ia~DG~~v~p~~~~~l~i~~GqRydvlv~a~~ 267 (545)
T PLN02168 189 DGILFNGRGPEETFFAFEPGKTYRLRISNVGLKTCLNFRIQDHDMLL-VETEGTYVQKRVYSSLDIHVGQSYSVLVTAKT 267 (545)
T ss_pred CEEEEeccCCCcceEEeCCCCEEEEEEEeccCCceEEEEECCcEEEE-EEECCeECCCceeeEEEEcCCceEEEEEEcCC
Confidence 5689999953 579999999999999999864 45778888887643 56899764 2356899999999999963
Q ss_pred Cc-c---ceeeccChh--hhhcCCeeeEEEEEcCCCC----CCCC-CCC-CC----ceEEEEe-ece---ecchH-----
Q 012003 124 QI-G---SFFYFPSLD--FQRAAGGYGGIIINNRDVI----PLPF-AVP-DG----DITIFIS-DWY---TKSHK----- 178 (473)
Q Consensus 124 ~~-G---t~wYH~H~~--~q~~~Gl~G~liV~~~~~~----~~~~-~~~-~~----e~~l~l~-d~~---~~~~~----- 178 (473)
++ | .||.+.-.. .+...+ . +++..+.... +.+. +.. +. +....+. ... .....
T Consensus 268 ~~~g~~~~Y~i~a~~~~~~~~~~~-~-ail~Y~~~~~~~~~p~p~~p~~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~ 345 (545)
T PLN02168 268 DPVGIYRSYYIVATARFTDAYLGG-V-ALIRYPNSPLDPVGPLPLAPALHDYFSSVEQALSIRMDLNVGAARSNPQGSYH 345 (545)
T ss_pred CCCCCcceEEEEEEecccCCCcce-E-EEEEECCCCCCCCCCCCCCCcccccccccchhhhhhhcCCCCCCCCCCccccc
Confidence 43 4 899886542 122222 2 3333332211 1110 000 00 1000000 000 00000
Q ss_pred ----HHHHhhhCCCC---CCCCCeEEEcCCCCCCCCCCc----------------CCCC-------CCceEEEEeCCcEE
Q 012003 179 ----KLRKDVENGVD---LGVPDGILINGLGPYRYDAAI----------------VPDG-------IPYQLINVEPGKTY 228 (473)
Q Consensus 179 ----~~~~~~~~~~~---~~~~~~~liNG~~~~~~~~~~----------------~~~~-------~~~~~~~v~~G~~~ 228 (473)
.+...+..... ......+.|||..+..-.... .+.. .....++++.|+.+
T Consensus 346 ~~~~~~~~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~~~~~~~V 425 (545)
T PLN02168 346 YGRINVTRTIILHNDVMLSSGKLRYTINGVSFVYPGTPLKLVDHFQLNDTIIPGMFPVYPSNKTPTLGTSVVDIHYKDFY 425 (545)
T ss_pred ccccccceeEEecccccccCceEEEEECCCccCCCCCchhhhhhcccccccccCCCccCCCcCccccCceEEEecCCCEE
Confidence 00000000000 000124678888753210000 0000 01345788889999
Q ss_pred EEEEeEeCCCceeEEEEeCceeEEEee-cC----------ceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 229 RLRVHNVGISTSLNFRIQNHNLLLVET-EG----------SYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 229 rlRliN~~~~~~~~~~i~gh~~~via~-DG----------~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
.+=|-|... ..|.||+|||.|+|++. +| ++..|...|++.+.++.-.-|-+++|+ || -+-++++.
T Consensus 426 eiViqn~~~-~~HP~HLHGh~F~Vvg~g~g~~~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-~Wl~HCHi 501 (545)
T PLN02168 426 HIVFQNPLF-SLESYHIDGYNFFVVGYGFGAWSESKKAGYNLVDAVSRSTVQVYPYSWTAILIAMDN-QG-MWNVRSQK 501 (545)
T ss_pred EEEEeCCCC-CCCCeeeCCCceEEEECCCCCCCccccccCCCCCCCccceEEeCCCCEEEEEEEccC-Ce-EEeeeecC
Confidence 888888654 48999999999999976 12 224578899999999999999999995 67 66677875
No 31
>PLN02792 oxidoreductase
Probab=98.79 E-value=1.5e-06 Score=92.06 Aligned_cols=243 Identities=14% Similarity=0.072 Sum_probs=142.9
Q ss_pred EEEEEEcCCC--CCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEE
Q 012003 50 QQVIGINGQF--PGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 50 ~~~~~~Ng~~--pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~ 121 (473)
-..+++||+- ..++|.+++|+++++||.|... ....++..|..+.. .+.||.+. ....|.|||+++..+++
T Consensus 179 ~d~~liNG~~~~~~~~~~v~~Gk~yRlRliNa~~~~~~~f~i~gH~~tV-I~~DG~~v~p~~~~~l~i~~GqRydVlV~a 257 (536)
T PLN02792 179 PDGVMINGQGVSYVYSITVDKGKTYRFRISNVGLQTSLNFEILGHQLKL-IEVEGTHTVQSMYTSLDIHVGQTYSVLVTM 257 (536)
T ss_pred CCEEEEeccCCCCcceEEECCCCEEEEEEEEcCCCceEEEEECCcEEEE-EEeCCccCCCcceeEEEEccCceEEEEEEc
Confidence 3678999984 2478999999999999999965 45688888887543 56899763 23559999999999999
Q ss_pred CCCccceeeccChhhhhcCCeee-EEEEEcCCCCCC---C-CC-CCCCceEE---EEeeceecc-----hH---------
Q 012003 122 KDQIGSFFYFPSLDFQRAAGGYG-GIIINNRDVIPL---P-FA-VPDGDITI---FISDWYTKS-----HK--------- 178 (473)
Q Consensus 122 ~~~~Gt~wYH~H~~~q~~~Gl~G-~liV~~~~~~~~---~-~~-~~~~e~~l---~l~d~~~~~-----~~--------- 178 (473)
.+.+|.||........ ...+.+ +++-........ + .+ ..+.+... ...++.... ..
T Consensus 258 ~~~~g~Y~i~a~~~~~-~~~~~~~ail~Y~g~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 336 (536)
T PLN02792 258 DQPPQNYSIVVSTRFI-AAKVLVSSTLHYSNSKGHKIIHARQPDPDDLEWSIKQAQSIRTNLTASGPRTNPQGSYHYGKM 336 (536)
T ss_pred CCCCceEEEEEEeccC-CCCCceEEEEEECCCCCCCCCCCCCCCcCCccccccchhhhhhccCCCCCCCCCCccccccee
Confidence 6447999988653210 011122 333332211110 0 00 00000000 000000000 00
Q ss_pred HHHHh--hhCCCC-CCCCCeEEEcCCCCCCCCCC-c---------------CCC--------CCCceEEEEeCCcEEEEE
Q 012003 179 KLRKD--VENGVD-LGVPDGILINGLGPYRYDAA-I---------------VPD--------GIPYQLINVEPGKTYRLR 231 (473)
Q Consensus 179 ~~~~~--~~~~~~-~~~~~~~liNG~~~~~~~~~-~---------------~~~--------~~~~~~~~v~~G~~~rlR 231 (473)
.+... +..... ....-.+.|||..+..-... + .+. ......+.++.|+.+-+=
T Consensus 337 ~~~~~~~~~~~~~~~~~~~~~~iN~~s~~~p~~p~L~a~~~~~~g~~~~~~~~~~p~~~~~~~~~~~v~~~~~~~~VeiV 416 (536)
T PLN02792 337 KISRTLILESSAALVKRKQRYAINGVSFVPSDTPLKLADHFKIKGVFKVGSIPDKPRRGGGMRLDTSVMGAHHNAFLEII 416 (536)
T ss_pred ccceeEEecccccccCceeEEEECCcccCCCCCchhhhhhhccCCCcCcccCccCCcccCCCccCceEEEcCCCCEEEEE
Confidence 00000 000000 00012466888775321000 0 000 002345688899999998
Q ss_pred EeEeCCCceeEEEEeCceeEEEee-cCc----------eeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 232 VHNVGISTSLNFRIQNHNLLLVET-EGS----------YTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 232 liN~~~~~~~~~~i~gh~~~via~-DG~----------~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|-|.... .|.||+|||.|+||+. +|. +..|...|++.+.++.-.-+-+++|+ || -+.++++..
T Consensus 417 iqn~~~~-~HP~HLHGh~F~Vvg~G~G~~~~~~~~~~Nl~nP~~RdTv~v~~~gw~aIRf~aDN-PG-vW~~HCh~~ 490 (536)
T PLN02792 417 FQNREKI-VQSYHLDGYNFWVVGINKGIWSRASRREYNLKDAISRSTTQVYPESWTAVYVALDN-VG-MWNLRSQFW 490 (536)
T ss_pred EECCCCC-CCCeeeCCCceEEEeecCCCCCcccccccCcCCCCccceEEECCCCEEEEEEEeeC-CE-EEeeeEcch
Confidence 8886543 7999999999999975 232 23578899999999999999999996 67 566777554
No 32
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=98.79 E-value=1.2e-07 Score=101.12 Aligned_cols=232 Identities=10% Similarity=0.063 Sum_probs=133.2
Q ss_pred eEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECCCc-cceeeccChh
Q 012003 63 ILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKDQI-GSFFYFPSLD 135 (473)
Q Consensus 63 ~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~~~-Gt~wYH~H~~ 135 (473)
.|.|++|+++++||.|.. .....+++.|.... ..+.||.+. ....|.||||++..+++.+.+ |.||.+.-..
T Consensus 204 ~~~v~~g~~~RlRliNa~~~~~~~~~id~h~~~-VIa~DG~~v~P~~v~~l~i~~GqR~dvlv~~~~~~~~~y~ira~~~ 282 (541)
T TIGR03388 204 ILHVEPGKTYRLRIASTTALAALNFAIEGHKLT-VVEADGNYVEPFTVKDIDIYSGETYSVLLTTDQDPSRNYWISVGVR 282 (541)
T ss_pred EEEECCCCEEEEEEEcccccceEEEEECCCEEE-EEEeCCEecccceeCeEEecCCCEEEEEEeCCCCCCCcEEEEEecc
Confidence 589999999999999985 46677888887654 256899764 234589999999999984334 5899986543
Q ss_pred hhhc-CCeeeEEEEEcCCC-CCCC---C---CC-CCC------ceEEEEeec-eecchHHHHH--hh-hCCCCCCCCCeE
Q 012003 136 FQRA-AGGYGGIIINNRDV-IPLP---F---AV-PDG------DITIFISDW-YTKSHKKLRK--DV-ENGVDLGVPDGI 196 (473)
Q Consensus 136 ~q~~-~Gl~G~liV~~~~~-~~~~---~---~~-~~~------e~~l~l~d~-~~~~~~~~~~--~~-~~~~~~~~~~~~ 196 (473)
.+.. .....+++...... ...+ . +. .+. +..+ +... .......... .+ ...........+
T Consensus 283 ~~~~~~~~~~aiL~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (541)
T TIGR03388 283 GRKPNTPPGLTVLNYYPNSPSRLPPTPPPVTPAWDDFDRSKAFSLAI-KAAMGSPKPPETSDRRIVLLNTQNKINGYTKW 361 (541)
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCCCCCCCCccccchhhccchhh-hccccCCCCCCCCCcEEEEeccCcccCceEEE
Confidence 2211 01112344432211 1000 0 00 000 0000 0000 0000000000 00 000000111236
Q ss_pred EEcCCCCCCCCCC-----------------c------------CCCC----CCceEEEEeCCcEEEEEEeEeCC-----C
Q 012003 197 LINGLGPYRYDAA-----------------I------------VPDG----IPYQLINVEPGKTYRLRVHNVGI-----S 238 (473)
Q Consensus 197 liNG~~~~~~~~~-----------------~------------~~~~----~~~~~~~v~~G~~~rlRliN~~~-----~ 238 (473)
.+||..+..-... . .... ...-++.++.|+++.+.|.|... .
T Consensus 362 ~~n~~s~~~p~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~Vdivi~n~~~~~~~~~ 441 (541)
T TIGR03388 362 AINNVSLTLPHTPYLGSLKYNLLNAFDQKPPPENYPRDYDIFKPPPNPNTTTGNGIYRLKFNTTVDVILQNANTLNGNNS 441 (541)
T ss_pred EECcccCCCCCccHHHHHhhcCCccccCCCCcccccccccccCCCcccccccCceEEEecCCCeEEEEEECCccccCCCC
Confidence 7888765311000 0 0000 01245788999999999999652 3
Q ss_pred ceeEEEEeCceeEEEeec-Cce-----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecc
Q 012003 239 TSLNFRIQNHNLLLVETE-GSY-----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRF 298 (473)
Q Consensus 239 ~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~ 298 (473)
..|.||+|||.|+|++.. |.+ ..|...|++.+.++.-.-|-+++++ || -+.++++...
T Consensus 442 ~~HP~HLHGh~F~vlg~g~g~~~~~~~~~~~n~~nP~~RDTv~vp~~gwvvIRF~adN-PG-~W~~HCHi~~ 511 (541)
T TIGR03388 442 ETHPWHLHGHDFWVLGYGEGKFRPGVDEKSYNLKNPPLRNTVVIFPYGWTALRFVADN-PG-VWAFHCHIEP 511 (541)
T ss_pred CCCcEEecCCceEEEeeccCCCCcccCcccccCCCCCEeceEEeCCCceEEEEEECCC-Ce-Eeeeeccchh
Confidence 479999999999999986 443 1367789999999999999999995 67 4556676653
No 33
>PLN02991 oxidoreductase
Probab=98.78 E-value=1.4e-06 Score=92.25 Aligned_cols=243 Identities=11% Similarity=0.091 Sum_probs=142.2
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECC
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~ 123 (473)
-..+++||+...+++.+++|+++++|+.|... ....++..|..+.. .+.||.+. .+..|.|||+++...++.+
T Consensus 190 ~d~~liNG~~~~~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~~~p~~~~~l~i~~GQRydvlv~a~~ 268 (543)
T PLN02991 190 PDGILINGRGSGATLNIEPGKTYRLRISNVGLQNSLNFRIQNHTMKL-VEVEGTHTIQTPFSSLDVHVGQSYSVLITADQ 268 (543)
T ss_pred CCEEEEccCCCCceEEECCCCEEEEEEEeccCCeeEEEEECCCEEEE-EEeCCccccceeeeEEEEcCCcEEEEEEECCC
Confidence 36789999976689999999999999999865 44678888887543 56899763 2356899999999999865
Q ss_pred CccceeeccChh--hhhcCCeeeEEEEEcCCC-C--CCCCCCCCCceEEE---Eeeceec-----c--hH-------HHH
Q 012003 124 QIGSFFYFPSLD--FQRAAGGYGGIIINNRDV-I--PLPFAVPDGDITIF---ISDWYTK-----S--HK-------KLR 181 (473)
Q Consensus 124 ~~Gt~wYH~H~~--~q~~~Gl~G~liV~~~~~-~--~~~~~~~~~e~~l~---l~d~~~~-----~--~~-------~~~ 181 (473)
.+|.||.-.... .+...+ .+.|-.+.... . +.+....+.+...- ..++... . .. .+.
T Consensus 269 ~~~~y~i~~~~~~~~~~~~~-~AIl~Y~g~~~~~~~~~p~~p~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~~~~~~~ 347 (543)
T PLN02991 269 PAKDYYIVVSSRFTSKILIT-TGVLHYSNSAGPVSGPIPDGPIQLSWSFDQARAIKTNLTASGPRPNPQGSYHYGKINIT 347 (543)
T ss_pred CCCcEEEEEeeccCCCCcce-EEEEEeCCCCCCCCCCCCCCCccccccccchhhhhhcccCCCCCCCCCccccccccccc
Confidence 578999765431 111111 22222222211 0 11100000000000 0000000 0 00 000
Q ss_pred Hh--hhCCCC-CCCCCeEEEcCCCCCCCCCCc--------C--------C-------CCCCceEEEEeCCcEEEEEEeEe
Q 012003 182 KD--VENGVD-LGVPDGILINGLGPYRYDAAI--------V--------P-------DGIPYQLINVEPGKTYRLRVHNV 235 (473)
Q Consensus 182 ~~--~~~~~~-~~~~~~~liNG~~~~~~~~~~--------~--------~-------~~~~~~~~~v~~G~~~rlRliN~ 235 (473)
.. +..... ....-.+.|||..+..-.... . + .......+.++.|+.+.+=|-|.
T Consensus 348 ~~~~~~~~~~~~~g~~~~~iN~~s~~~p~~p~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~VeiViqn~ 427 (543)
T PLN02991 348 RTIRLANSAGNIEGKQRYAVNSASFYPADTPLKLADYFKIAGVYNPGSIPDQPTNGAIFPVTSVMQTDYKAFVEIVFENW 427 (543)
T ss_pred eeEEEeecccccCceEEEEECCCccCCCCCChhhhhhhcccCccccccccccCCCCccccCCcEEEcCCCCEEEEEEeCC
Confidence 00 000000 000125678887754210000 0 0 00112345678888888888876
Q ss_pred CCCceeEEEEeCceeEEEeec-Cc----------eeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 236 GISTSLNFRIQNHNLLLVETE-GS----------YTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 236 ~~~~~~~~~i~gh~~~via~D-G~----------~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.. ..|.||+|||.|+|++.. |. +..|...|++.+.++.-.-+-+++|+ || -+.++++..
T Consensus 428 ~~-~~HP~HLHGh~F~Vvg~G~G~f~~~~~~~~Nl~nP~rRDTv~vp~~Gw~vIRF~aDN-PG-~W~~HCHi~ 497 (543)
T PLN02991 428 ED-IVQTWHLDGYSFYVVGMELGKWSAASRKVYNLNDAVSRCTVQVYPRSWTAIYVSLDN-VG-MWNLRSELW 497 (543)
T ss_pred CC-CCCCeeeCCcceEEEEeCCCCCCcccccccCCCCCCcccEEEECCCCEEEEEEECCC-CE-EeeeeeCcc
Confidence 54 389999999999999753 22 23477899999999999999999995 67 666778763
No 34
>PLN02604 oxidoreductase
Probab=98.71 E-value=5.5e-07 Score=96.35 Aligned_cols=232 Identities=10% Similarity=0.081 Sum_probs=133.9
Q ss_pred ceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECCCcc-ceeeccCh
Q 012003 62 PILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKDQIG-SFFYFPSL 134 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~~~G-t~wYH~H~ 134 (473)
++|.+++|+++++||.|... ....++.-|..+. ..+.||.+. ....|.||||++..+++.+.+| .||-+...
T Consensus 224 ~~~~v~~g~~~RlRlINa~~~~~~~~sidgH~~~-VIa~DG~~v~P~~v~~l~l~~GqRydvlV~~~~~~~~~y~ira~~ 302 (566)
T PLN02604 224 YVLTVVPGKTYRLRISSLTALSALSFQIEGHNMT-VVEADGHYVEPFVVKNLFIYSGETYSVLVKADQDPSRNYWVTTSV 302 (566)
T ss_pred eEEEecCCCEEEEEEEeccccceEEEEECCCEEE-EEEeCCEecccceeeeEEEccCCeEEEEEECCCCCCCCEEEEEec
Confidence 58999999999999999964 4566777777654 256899864 2345899999999999854345 79998653
Q ss_pred h---hhhcCCeeeEEEEEcCCC--CCCCCCCCC----CceEEEEeece---------ecchHHHHH---hhhCCCCCCCC
Q 012003 135 D---FQRAAGGYGGIIINNRDV--IPLPFAVPD----GDITIFISDWY---------TKSHKKLRK---DVENGVDLGVP 193 (473)
Q Consensus 135 ~---~q~~~Gl~G~liV~~~~~--~~~~~~~~~----~e~~l~l~d~~---------~~~~~~~~~---~~~~~~~~~~~ 193 (473)
. .+...| + +|+-..... ...+..... .+....+.... ......... ...........
T Consensus 303 ~~~~~~~~~~-~-aIL~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~ 380 (566)
T PLN02604 303 VSRNNTTPPG-L-AIFNYYPNHPRRSPPTVPPSGPLWNDVEPRLNQSLAIKARHGYIHPPPLTSDRVIVLLNTQNEVNGY 380 (566)
T ss_pred ccCCCCCcce-e-EEEEECCCCCCCCCCCCCCCCCcccccchhhcchhcccccccCcCCCCCCCCeEEEEeccccccCCe
Confidence 2 123333 2 333322211 111110000 00000000000 000000000 00000000011
Q ss_pred CeEEEcCCCCCCCCC----------------CcCC------------------CCCCceEEEEeCCcEEEEEEeEeCC--
Q 012003 194 DGILINGLGPYRYDA----------------AIVP------------------DGIPYQLINVEPGKTYRLRVHNVGI-- 237 (473)
Q Consensus 194 ~~~liNG~~~~~~~~----------------~~~~------------------~~~~~~~~~v~~G~~~rlRliN~~~-- 237 (473)
..+.|||..+..-.. ...+ ..+...++.++.|+++.+.|.|...
T Consensus 381 ~~w~in~~~~~~p~~p~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~~~~~ 460 (566)
T PLN02604 381 RRWSVNNVSFNLPHTPYLIALKENLTGAFDQTPPPEGYDFANYDIYAKPNNSNATSSDSIYRLQFNSTVDIILQNANTMN 460 (566)
T ss_pred EEEEECcccCCCCCCchhHhhhhcCCCcccCCCCCcccccccccccCCccccccccCceEEEccCCCeEEEEEECCcccc
Confidence 257788876532000 0000 0011235789999999999999752
Q ss_pred ---CceeEEEEeCceeEEEeec-Cce-----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecc
Q 012003 238 ---STSLNFRIQNHNLLLVETE-GSY-----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRF 298 (473)
Q Consensus 238 ---~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~ 298 (473)
...|.||+|||.|+|++.. |.+ ..|...|++.+.++.-.-|-+++|+ || -+.++++...
T Consensus 461 ~~~~~~HP~HLHGH~F~Vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~gwvvIRF~aDN-PG-~WlfHCHI~~ 534 (566)
T PLN02604 461 ANNSETHPWHLHGHDFWVLGYGEGKFNMSSDPKKYNLVDPIMKNTVPVHPYGWTALRFRADN-PG-VWAFHCHIES 534 (566)
T ss_pred CCCCCCCCEEecCCceEEEEecCCCCCccccccccCCCCCCccceEEeCCCceEEEEEECCC-Ce-EeeEeecchh
Confidence 3479999999999999987 432 1366789999999999999999995 67 5556777653
No 35
>PRK02710 plastocyanin; Provisional
Probab=98.69 E-value=1.8e-07 Score=79.24 Aligned_cols=74 Identities=20% Similarity=0.351 Sum_probs=55.8
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (473)
-+.|++++||+| +++|.-..++++.+.|.. +...+...+.||++++|.|+. +|+|-|+|- .|...
T Consensus 46 P~~i~v~~Gd~V--~~~N~~~~~H~v~~~~~~--------~~~~~~~~~~pg~t~~~tF~~---~G~y~y~C~--~H~~~ 110 (119)
T PRK02710 46 PSTLTIKAGDTV--KWVNNKLAPHNAVFDGAK--------ELSHKDLAFAPGESWEETFSE---AGTYTYYCE--PHRGA 110 (119)
T ss_pred CCEEEEcCCCEE--EEEECCCCCceEEecCCc--------cccccccccCCCCEEEEEecC---CEEEEEEcC--CCccC
Confidence 379999999985 567877778888766431 111122357899999999974 799999997 56678
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
||.|.|+|+
T Consensus 111 gM~G~I~V~ 119 (119)
T PRK02710 111 GMVGKITVE 119 (119)
T ss_pred CcEEEEEEC
Confidence 999999984
No 36
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=98.60 E-value=1.7e-06 Score=92.07 Aligned_cols=243 Identities=11% Similarity=0.083 Sum_probs=140.8
Q ss_pred EEEEEcCCC---------------CCceEEEecCCEEEEEEEECCCC-CceeeeCCCC-CCCCCCCCCCCC-----CCcc
Q 012003 51 QVIGINGQF---------------PGPILNVTTNWNVVVNVKNDLDE-PLLLTWNGVQ-HRKNSWQDGVLG-----TNCP 108 (473)
Q Consensus 51 ~~~~~Ng~~---------------pgP~i~v~~Gd~v~v~v~N~l~~-~~siH~HG~~-~~~~~~~DGv~~-----tq~~ 108 (473)
..+++||+. ..|+|++++|+++++|+.|.... ...+++.|.. +. ..+.||.+. ....
T Consensus 172 d~~liNG~~~~~~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~idgH~~~~-VIa~DG~~~~P~~v~~l~ 250 (538)
T TIGR03390 172 EAVLLNGKSGNKSFYAQINPSGSCMLPVIDVEPGKTYRLRFIGATALSLISLGIEDHENLT-IIEADGSYTKPAKIDHLQ 250 (538)
T ss_pred ceEEECCccccccccccccCCCCCcceEEEECCCCEEEEEEEccCCceEEEEEECCCCeEE-EEEeCCCCCCceEeCeEE
Confidence 467899983 13789999999999999999653 4678888876 43 256899863 2345
Q ss_pred cCCCCceEEEEEECCC-------ccceeeccChh--hhhcCCeeeEEEEEcCCCCCCC---C-C--CCC------CceEE
Q 012003 109 IPAGWNWTYQFQVKDQ-------IGSFFYFPSLD--FQRAAGGYGGIIINNRDVIPLP---F-A--VPD------GDITI 167 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~-------~Gt~wYH~H~~--~q~~~Gl~G~liV~~~~~~~~~---~-~--~~~------~e~~l 167 (473)
|.||||++..+++.+. +|-||...-.. .+... ..+.|..+.......+ . . ... .|.-+
T Consensus 251 l~~GqRydVlv~~~~~~~~~~~~~~~Y~ir~~~~~~~~~~~-~~aiL~Y~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~l 329 (538)
T TIGR03390 251 LGGGQRYSVLFKAKTEDELCGGDKRQYFIQFETRDRPKVYR-GYAVLRYRSDKASKLPSVPETPPLPLPNSTYDWLEYEL 329 (538)
T ss_pred EccCCEEEEEEECCCccccccCCCCcEEEEEeecCCCCcce-EEEEEEeCCCCCCCCCCCCCCCCCCccCcchhhhheee
Confidence 8999999999999532 38899875421 12111 2333333222111111 0 0 000 01101
Q ss_pred E-Eeecee---cchHHHHH--hhhCCCCC---CCCCeEEEcCCCCCCC-CCC------cCC----------------CCC
Q 012003 168 F-ISDWYT---KSHKKLRK--DVENGVDL---GVPDGILINGLGPYRY-DAA------IVP----------------DGI 215 (473)
Q Consensus 168 ~-l~d~~~---~~~~~~~~--~~~~~~~~---~~~~~~liNG~~~~~~-~~~------~~~----------------~~~ 215 (473)
. +..-.. ........ .+..+... .....+.+||..+... ... ... ...
T Consensus 330 ~pl~~~~~~~~~~~~~~d~~~~l~~~~~~~~~~g~~~~~~N~~s~~~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~ 409 (538)
T TIGR03390 330 EPLSEENNQDFPTLDEVTRRVVIDAHQNVDPLNGRVAWLQNGLSWTESVRQTPYLVDIYENGLPATPNYTAALANYGFDP 409 (538)
T ss_pred EecCccccCCCCCCCcCceEEEEEccccccccCCeEEEEECCcccCCCCCCCchHHHHhcCCCCcCCCcccccccCCcCc
Confidence 0 100000 00000000 00011000 0113578999876421 000 000 001
Q ss_pred CceEEEEeCCcEEEEEEeEeC-------CCceeEEEEeCceeEEEee-cCce-----------eeeeeeeEEEEc-----
Q 012003 216 PYQLINVEPGKTYRLRVHNVG-------ISTSLNFRIQNHNLLLVET-EGSY-----------TVQQNYTNMDIH----- 271 (473)
Q Consensus 216 ~~~~~~v~~G~~~rlRliN~~-------~~~~~~~~i~gh~~~via~-DG~~-----------~~p~~~d~v~l~----- 271 (473)
....+.++.|+++++.|.|.. ....|.||+|||+|+||+. +|.+ ..|...|++.+.
T Consensus 410 ~~~~~~~~~~~~V~ivi~n~~~~~~~~~~~~~HP~HlHGh~F~vlg~G~G~~~~~~~~~~~nl~nP~rRDTv~vp~~~~~ 489 (538)
T TIGR03390 410 ETRAFPAKVGEVLEIVWQNTGSYTGPNGGVDTHPFHAHGRHFYDIGGGDGEYNATANEAKLENYTPVLRDTTMLYRYAVK 489 (538)
T ss_pred CceEEEcCCCCEEEEEEECCcccccCCCCCCCCCeeecCCcEEEEcccccccCCccChhhhccCCCCeecceeecccccc
Confidence 123577889999999999974 2458999999999999985 5543 247788999883
Q ss_pred -----CCceEEEEEEeCCCCCcceEEEEeec
Q 012003 272 -----VGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 272 -----pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
++.-.-|.+++++ || .+.++++..
T Consensus 490 ~~~~~~~~~~~ir~~~dN-PG-~W~~HCHi~ 518 (538)
T TIGR03390 490 VVPGAPAGWRAWRIRVTN-PG-VWMMHCHIL 518 (538)
T ss_pred ccccCCCceEEEEEEcCC-Ce-eEEEeccch
Confidence 7788888899985 67 677777765
No 37
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=98.53 E-value=2.1e-07 Score=76.95 Aligned_cols=70 Identities=16% Similarity=0.225 Sum_probs=46.4
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
..|++++|++|+|+++|.....+.+...++.. ...|.||++.+++|+. +++|+|=|+|..+. .
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~~~~------------~~~l~~g~~~~~~f~~-~~~G~y~~~C~~~~---~- 97 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPDLGI------------SKVLPPGETATVTFTP-LKPGEYEFYCTMHP---N- 97 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGGGTE------------EEEE-TT-EEEEEEEE--S-EEEEEB-SSS----T-
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECCCce------------EEEECCCCEEEEEEcC-CCCEEEEEEcCCCC---c-
Confidence 69999999999999999987777776666432 2468999999999987 58999999999655 2
Q ss_pred eeeEEEE
Q 012003 142 GYGGIII 148 (473)
Q Consensus 142 l~G~liV 148 (473)
|.|.|||
T Consensus 98 m~G~liV 104 (104)
T PF13473_consen 98 MKGTLIV 104 (104)
T ss_dssp TB-----
T ss_pred ceecccC
Confidence 6777775
No 38
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=98.48 E-value=1.1e-06 Score=76.30 Aligned_cols=78 Identities=14% Similarity=0.172 Sum_probs=70.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee-----------eeeeeeEEEEcCCceEEEEEEeCCC
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-----------VQQNYTNMDIHVGQSFSFLVTTDQN 285 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-----------~p~~~d~v~l~pGeR~dv~v~~~~~ 285 (473)
...+.++.|++++|+|+|.+.. .|.||+|||.|+|++.++... .+...|++.+.+|++..+.++++ .
T Consensus 33 ~~~~~~~~g~~v~~~l~N~~~~-~Hp~HlHG~~F~vl~~~~~~~~~~~~~~~~~~~~~~~DTv~v~~~~~~~i~~~~~-~ 110 (138)
T PF07731_consen 33 TPVIEVKNGDVVEIVLQNNGSM-PHPFHLHGHSFQVLGRGGGPWNPDDTQSYNPENPGWRDTVLVPPGGWVVIRFRAD-N 110 (138)
T ss_dssp TSEEEEETTSEEEEEEEECTTS-SEEEEETTSEEEEEEETTEESTTHCGGCCCSSSSSEESEEEEETTEEEEEEEEET-S
T ss_pred cceEEEeCCCEEEEEEECCCCC-ccceEEEeeEEEeeecCCcccccccccccccccCcccccccccceeEEEEEEEee-c
Confidence 4889999999999999998866 999999999999999999884 46789999999999999999998 5
Q ss_pred CCcceEEEEeec
Q 012003 286 ASSDYYIVASPR 297 (473)
Q Consensus 286 ~g~~y~i~~~~~ 297 (473)
+| .|.+.++..
T Consensus 111 ~G-~w~~HCHi~ 121 (138)
T PF07731_consen 111 PG-PWLFHCHIL 121 (138)
T ss_dssp TE-EEEEEESSH
T ss_pred ce-EEEEEEchH
Confidence 78 888888765
No 39
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.46 E-value=6.8e-07 Score=73.11 Aligned_cols=82 Identities=15% Similarity=0.189 Sum_probs=56.9
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCC-CCCCCCCCC-CCcccCCCCceEEEEEECCCccceeeccChhhhh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRK-NSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQR 138 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 138 (473)
...|++++||+| +++|.-..++++.++...... .....+... ....+.||+++++.|.. +|+|+|+|. .|.
T Consensus 16 P~~i~v~~G~~V--~~~N~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~---~G~y~y~C~--~H~ 88 (99)
T TIGR02656 16 PAKISIAAGDTV--EWVNNKGGPHNVVFDEDAVPAGVKELAKSLSHKDLLNSPGESYEVTFST---PGTYTFYCE--PHR 88 (99)
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEECCCCCccchhhhcccccccccccCCCCEEEEEeCC---CEEEEEEcC--Ccc
Confidence 478999999986 566876677877776432110 000011111 22357899999998864 899999998 788
Q ss_pred cCCeeeEEEEE
Q 012003 139 AAGGYGGIIIN 149 (473)
Q Consensus 139 ~~Gl~G~liV~ 149 (473)
.+||.|.|+|+
T Consensus 89 ~aGM~G~I~V~ 99 (99)
T TIGR02656 89 GAGMVGKITVE 99 (99)
T ss_pred ccCCEEEEEEC
Confidence 88999999984
No 40
>PLN02191 L-ascorbate oxidase
Probab=98.46 E-value=7.6e-06 Score=87.63 Aligned_cols=240 Identities=11% Similarity=0.042 Sum_probs=134.0
Q ss_pred EcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECCCc-cc
Q 012003 55 INGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKDQI-GS 127 (473)
Q Consensus 55 ~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~~~-Gt 127 (473)
+||+.-.+++.+++|+++++|+.|... ....+++.|..+.. .+.||.+. ....|.||||++.-+++.+.+ +.
T Consensus 219 ~n~~~~p~~~~v~~G~~yRlRiINa~~~~~~~~~idgH~~tV-Ia~DG~~v~P~~v~~l~i~~GqRydVlV~a~~~~~~~ 297 (574)
T PLN02191 219 EGDQCAPQTLRVEPNKTYRIRLASTTALASLNLAVQGHKLVV-VEADGNYITPFTTDDIDIYSGESYSVLLTTDQDPSQN 297 (574)
T ss_pred cCCCCCceEEEEcCCCEEEEEEEecCCceeEEEEECCCeEEE-EEcCCeeccceEeeeEEEcCCCeEEEEEECCCCCCCC
Confidence 444432237999999999999999954 55667777876543 56899875 234589999999999985435 58
Q ss_pred eeeccChhhhh---cCCeeeEEEEEcCCCCCCCC------CC-CCC----ceEE-EEeece-ecchHHH-HH--hhhCCC
Q 012003 128 FFYFPSLDFQR---AAGGYGGIIINNRDVIPLPF------AV-PDG----DITI-FISDWY-TKSHKKL-RK--DVENGV 188 (473)
Q Consensus 128 ~wYH~H~~~q~---~~Gl~G~liV~~~~~~~~~~------~~-~~~----e~~l-~l~d~~-~~~~~~~-~~--~~~~~~ 188 (473)
||-+.-...+. ..++ +.|-.........+. +. .+. .... .+.... .+..... .. .+....
T Consensus 298 y~ira~~~~~~~~~~~~~-ail~Y~~~~~~~~p~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~ 376 (574)
T PLN02191 298 YYISVGVRGRKPNTTQAL-TILNYVTAPASKLPSSPPPVTPRWDDFERSKNFSKKIFSAMGSPSPPKKYRKRLILLNTQN 376 (574)
T ss_pred EEEEEEccccCCCCCCce-EEEEECCCCCCCCCCCCCCCCCcccccchhhcccccccccccCCCCCCcccceEEEecccc
Confidence 99886432211 1232 223222221110010 00 000 0000 000000 0000000 00 000000
Q ss_pred CCCCCCeEEEcCCCCCCCCCC----------------cC----C-------------CCCCceEEEEeCCcEEEEEEeEe
Q 012003 189 DLGVPDGILINGLGPYRYDAA----------------IV----P-------------DGIPYQLINVEPGKTYRLRVHNV 235 (473)
Q Consensus 189 ~~~~~~~~liNG~~~~~~~~~----------------~~----~-------------~~~~~~~~~v~~G~~~rlRliN~ 235 (473)
.......+.+||..+..-... .. . .......+.++.|+.+.+=|.|.
T Consensus 377 ~~~~~~~~~~n~~s~~~p~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Vdivi~n~ 456 (574)
T PLN02191 377 LIDGYTKWAINNVSLVTPATPYLGSVKYNLKLGFNRKSPPRSYRMDYDIMNPPPFPNTTTGNGIYVFPFNVTVDVIIQNA 456 (574)
T ss_pred eeCCeEEEEECcccCcCCCcchHHHHhhccCcccccCCCcccccccccccCCCccccccccceeEEecCCCEEEEEEECC
Confidence 000012467788764211000 00 0 00112356777899999988887
Q ss_pred C-----CCceeEEEEeCceeEEEeec-Cce-----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecc
Q 012003 236 G-----ISTSLNFRIQNHNLLLVETE-GSY-----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRF 298 (473)
Q Consensus 236 ~-----~~~~~~~~i~gh~~~via~D-G~~-----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~ 298 (473)
. ....|.||+|||+|+||+.. |.+ ..|...|++.+.++.-.-|-+++|+ || -+-++++...
T Consensus 457 ~~~~~~~~~~HP~HLHGh~F~Vlg~G~g~~~~~~~~~~~nl~nP~rRDTv~vp~~Gw~vIRf~aDN-PG-~Wl~HCHi~~ 534 (574)
T PLN02191 457 NVLKGVVSEIHPWHLHGHDFWVLGYGDGKFKPGIDEKTYNLKNPPLRNTAILYPYGWTAIRFVTDN-PG-VWFFHCHIEP 534 (574)
T ss_pred CcccCCCCCCCCEEeCCCCeEEEEecCCCCCcccCcccccCCCCCcCCeEEeCCCCEEEEEEECCC-CE-EEEEecCchh
Confidence 5 24579999999999999763 222 2467789999999999999999995 67 5556777653
No 41
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.27 E-value=2e-06 Score=70.38 Aligned_cols=77 Identities=19% Similarity=0.299 Sum_probs=54.1
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCC------CC-CCcccCCCCceEEEEEECCCccceeeccC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV------LG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPS 133 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv------~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H 133 (473)
-+.|++++||+| ++.|....++++.+=--. +..|. +. ....+.||+++++.|+ ++|+|.|+|-
T Consensus 16 P~~i~V~~G~tV--~~~n~~~~~Hnv~~~~~~-----~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G~y~y~C~ 85 (99)
T PF00127_consen 16 PSEITVKAGDTV--TFVNNDSMPHNVVFVADG-----MPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPGTYEYYCT 85 (99)
T ss_dssp SSEEEEETTEEE--EEEEESSSSBEEEEETTS-----SHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSEEEEEEET
T ss_pred CCEEEECCCCEE--EEEECCCCCceEEEeccc-----ccccccccccCccccceecCCCCEEEEEeC---CCeEEEEEcC
Confidence 479999999985 566665566666653210 00111 00 1234789999999998 5899999998
Q ss_pred hhhhhcCCeeeEEEEE
Q 012003 134 LDFQRAAGGYGGIIIN 149 (473)
Q Consensus 134 ~~~q~~~Gl~G~liV~ 149 (473)
- |..+||.|.|+|+
T Consensus 86 -P-H~~~GM~G~i~V~ 99 (99)
T PF00127_consen 86 -P-HYEAGMVGTIIVE 99 (99)
T ss_dssp -T-TGGTTSEEEEEEE
T ss_pred -C-CcccCCEEEEEEC
Confidence 4 8888999999995
No 42
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=98.27 E-value=2.9e-06 Score=84.07 Aligned_cols=99 Identities=14% Similarity=0.117 Sum_probs=77.1
Q ss_pred EEEEEcCCCC--CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-C------CcccCCCCceEEEEE
Q 012003 51 QVIGINGQFP--GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-T------NCPIPAGWNWTYQFQ 120 (473)
Q Consensus 51 ~~~~~Ng~~p--gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-t------q~~I~PG~~~~Y~f~ 120 (473)
..+++||+.- .|.+.+++|+++++|+.|... ....+|.+|.+... -+.||.+. . ...|.||++++..++
T Consensus 189 ~~~~iNG~~~~~~~~~~v~~G~~~RlRiiNa~~~~~~~~~~~g~~~~~-v~~DG~~~~~~~~~~~~~~i~PG~R~dv~v~ 267 (311)
T TIGR02376 189 THVVFNGAVGALTGDNALTAGVGERVLFVHSQPNRDSRPHLIGGHGDY-VWVTGKFANPPNRDVETWFIPGGSAAAALYT 267 (311)
T ss_pred CEEEECCccCCCCCCcccccCCcEEEEEEcCCCCCCCCCeEecCCceE-EEECCcccCCCCCCcceEEECCCceEEEEEE
Confidence 5789999941 367899999999999999965 56789999986642 34588754 2 235899999999999
Q ss_pred ECCCccceeeccChhhhh-cCCeeeEEEEEcC
Q 012003 121 VKDQIGSFFYFPSLDFQR-AAGGYGGIIINNR 151 (473)
Q Consensus 121 ~~~~~Gt~wYH~H~~~q~-~~Gl~G~liV~~~ 151 (473)
++ ++|.||.|||.-.+. ..|+.|.|-++..
T Consensus 268 ~~-~pG~y~~~~~~~~~~~~~g~~~~i~~~g~ 298 (311)
T TIGR02376 268 FE-QPGVYAYVDHNLIEAFEKGAAAQVKVEGA 298 (311)
T ss_pred eC-CCeEEEEECcHHHHHHhCCCEEEEEECCC
Confidence 96 699999999975443 5688888777653
No 43
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.12 E-value=1e-05 Score=85.17 Aligned_cols=97 Identities=19% Similarity=0.212 Sum_probs=67.2
Q ss_pred ecCCCceEE--EEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEE
Q 012003 43 ASPLGDKQQ--VIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 43 ~~~dG~~~~--~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~ 120 (473)
+..+|...+ |....-.|--+.|+|++||+|+++|+|.-...-.+ ||+.... -|+ ..-+.||++.+..|+
T Consensus 534 v~R~G~kv~Vym~a~a~~f~p~~i~Vk~GDeVt~~lTN~d~~~DVi--HGF~Ip~----~nI---~~dv~PG~t~svtF~ 604 (635)
T PRK02888 534 VIRDGNKVRVYMTSQAPAFGLREFTVKQGDEVTVIVTNLDKVEDLT--HGFAIPN----YGV---NMEVAPQATASVTFT 604 (635)
T ss_pred eEEeCCEEEEEEEEEecccCCceEEecCCCEEEEEEEeCCcccccc--cceeecc----cCc---cEEEcCCceEEEEEE
Confidence 445675544 44556667667899999999999999952211111 4443311 011 234789999999999
Q ss_pred ECCCccceeeccCh---hhhhcCCeeeEEEEEcC
Q 012003 121 VKDQIGSFFYFPSL---DFQRAAGGYGGIIINNR 151 (473)
Q Consensus 121 ~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 151 (473)
+ +++|+|||||.. ..|. +|.|.|+|+++
T Consensus 605 a-dkPGvy~~~CtefCGa~H~--~M~G~~iVep~ 635 (635)
T PRK02888 605 A-DKPGVYWYYCTWFCHALHM--EMRGRMLVEPK 635 (635)
T ss_pred c-CCCEEEEEECCcccccCcc--cceEEEEEEeC
Confidence 8 689999999984 2443 89999999874
No 44
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=98.09 E-value=6.6e-05 Score=80.22 Aligned_cols=84 Identities=19% Similarity=0.200 Sum_probs=68.2
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEE-eecCceeeeeeeeEEEEcC
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~p 272 (473)
..++|||+.- -|.|+++.|+++++++.|.... ...+|.||..+.-- ..||... ..-.|.|
T Consensus 49 ~vi~vNGq~P-------------GPtI~~~~GD~v~V~V~N~L~~-~ttIHWHGl~q~~t~w~DGv~~-----TQcPI~P 109 (596)
T PLN00044 49 EAIGINGQFP-------------GPALNVTTNWNLVVNVRNALDE-PLLLTWHGVQQRKSAWQDGVGG-----TNCAIPA 109 (596)
T ss_pred EEEEEcCcCC-------------CCcEEEECCCEEEEEEEeCCCC-CccEEECCccCCCCccccCCCC-----CcCCcCC
Confidence 4689999873 3999999999999999999754 78888888765443 5799642 3468999
Q ss_pred CceEEEEEEeCCCCCcceEEEEeec
Q 012003 273 GQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 273 GeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|+++..-+++++..| +||..++..
T Consensus 110 G~sftY~F~~~dq~G-T~WYHsH~~ 133 (596)
T PLN00044 110 GWNWTYQFQVKDQVG-SFFYAPSTA 133 (596)
T ss_pred CCcEEEEEEeCCCCc-eeEeeccch
Confidence 999999999965578 999999865
No 45
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=97.96 E-value=0.00016 Score=63.82 Aligned_cols=97 Identities=18% Similarity=0.263 Sum_probs=71.4
Q ss_pred EEEEcCCCCC-ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCC-------CCCCCCC----CCC------cccCCCC
Q 012003 52 VIGINGQFPG-PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKN-------SWQDGVL----GTN------CPIPAGW 113 (473)
Q Consensus 52 ~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~-------~~~DGv~----~tq------~~I~PG~ 113 (473)
.+-|||+..| ++|-+..|-+|.|+++|.-..++++-. .+..+ ...||.. |.+ .-|.+|+
T Consensus 74 ~fNfnGts~G~mtIyiPaGw~V~V~f~N~e~~pHnl~i---v~n~t~~P~~~~~s~dgkil~~vG~~~s~~~~NGi~~Gq 150 (195)
T TIGR03094 74 PFNFNGTSYGAMTIYLPAGWNVYVTFTNYESLPHNLKL---LPNSTQTPRGPIWAHTGKIINSTGATTSIYYGNGISSGH 150 (195)
T ss_pred cccccCccCCceEEEEeCCCEEEEEEEcCCCCCccEEE---ecCCCCCCCccccccCceeEeecccccCccccccccccc
Confidence 3567887776 899999999999999999776666554 22222 2346643 222 2256788
Q ss_pred ceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCC
Q 012003 114 NWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (473)
Q Consensus 114 ~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (473)
+..=.|.. -++|+|||-|-.-.|..+||+|-+||...-
T Consensus 151 s~sg~~~~-~~~G~YwlvCgipGHAesGMw~~lIVSs~v 188 (195)
T TIGR03094 151 SRSGWWND-TSAGKYWLVCGITGHAESGMWAVVIVSSNV 188 (195)
T ss_pred eeEEEecc-CCCeeEEEEcccCChhhcCcEEEEEEecCc
Confidence 85555554 479999999999999999999999998754
No 46
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.93 E-value=5.2e-05 Score=59.77 Aligned_cols=74 Identities=14% Similarity=0.070 Sum_probs=51.3
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (473)
-+.|++++||+|. ++|.-..++++++..-... ..+ .....+.||+++++.|+ ++|+|-|||-.+.
T Consensus 10 P~~i~v~~GdtVt--~~N~d~~~Hnv~~~~g~~~---~~~---~~~~~~~~g~~~~~tf~---~~G~y~y~C~~Hp---- 74 (83)
T TIGR02657 10 TPELHVKVGDTVT--WINREAMPHNVHFVAGVLG---EAA---LKGPMMKKEQAYSLTFT---EAGTYDYHCTPHP---- 74 (83)
T ss_pred CCEEEECCCCEEE--EEECCCCCccEEecCCCCc---ccc---ccccccCCCCEEEEECC---CCEEEEEEcCCCC----
Confidence 4789999999975 5788777888887643110 011 01123578888887763 5899999997543
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
+|.|.++|+
T Consensus 75 ~M~G~v~V~ 83 (83)
T TIGR02657 75 FMRGKVVVE 83 (83)
T ss_pred CCeEEEEEC
Confidence 499999985
No 47
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=97.87 E-value=0.00011 Score=66.34 Aligned_cols=100 Identities=20% Similarity=0.291 Sum_probs=71.9
Q ss_pred EEEEcCCCCC-ceEEEecCCEEEEEEEECCCCCceeeeC--CCCC--CCCCCCCCCC----C------CCcccCCCCceE
Q 012003 52 VIGINGQFPG-PILNVTTNWNVVVNVKNDLDEPLLLTWN--GVQH--RKNSWQDGVL----G------TNCPIPAGWNWT 116 (473)
Q Consensus 52 ~~~~Ng~~pg-P~i~v~~Gd~v~v~v~N~l~~~~siH~H--G~~~--~~~~~~DGv~----~------tq~~I~PG~~~~ 116 (473)
.+-|||..-| ++|.+..|-+|.|+++|.-..+|++-.= +-.+ ......||.. + +...|.+|++..
T Consensus 75 ~~nfnGts~G~m~i~VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~ 154 (196)
T PF06525_consen 75 PFNFNGTSNGQMTIYVPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSAS 154 (196)
T ss_pred ceeeecccCCcEEEEEcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceee
Confidence 5678887655 7999999999999999986555443221 1110 1123345521 2 123588999998
Q ss_pred EEEEECCCccceeeccChhhhhcCCeeeEEEEEcCC
Q 012003 117 YQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (473)
Q Consensus 117 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (473)
-.|... ++|.||+-|-...|...||++-|||.+.-
T Consensus 155 ~~~~~l-~aG~YwlvC~ipGHA~sGMw~~LiVs~~v 189 (196)
T PF06525_consen 155 GVYNDL-PAGYYWLVCGIPGHAESGMWGVLIVSSNV 189 (196)
T ss_pred EEEccC-CCceEEEEccCCChhhcCCEEEEEEecCc
Confidence 777553 69999999999999999999999998754
No 48
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=97.75 E-value=0.00014 Score=60.82 Aligned_cols=75 Identities=9% Similarity=0.014 Sum_probs=50.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeee-CCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhc
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTW-NGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA 139 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~-HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 139 (473)
...|+|++||+|+....|. ++++.+ .+.. -+|... ..-.+|+++++.|. ++|+|=|+|- .|..
T Consensus 14 P~~v~V~~GdTV~f~n~d~---~Hnv~~~~~~~------p~g~~~--~~s~~g~~~~~tF~---~~G~Y~Y~C~--pH~~ 77 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK---GHNVETIKGMI------PEGAEA--FKSKINEEYTVTVT---EEGVYGVKCT--PHYG 77 (116)
T ss_pred CCEEEECCCCEEEEEECCC---CeeEEEccCCC------cCCccc--ccCCCCCEEEEEeC---CCEEEEEEcC--CCcc
Confidence 3789999999977777664 455554 2210 122210 11245666666663 6899999998 6778
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
+||.|.|+|.++
T Consensus 78 ~GM~G~V~Vg~~ 89 (116)
T TIGR02375 78 MGMVALIQVGDP 89 (116)
T ss_pred CCCEEEEEECCC
Confidence 899999999875
No 49
>PF00394 Cu-oxidase: Multicopper oxidase; InterPro: IPR001117 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 1 (blue) domains. These domains are also present in proteins that have lost the ability to bind copper.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1RZP_A 2AVF_D 1NIA_A 1KCB_A 2NRD_A 1NIB_A 2BW4_A 1RZQ_C 2BWD_A 2BWI_A ....
Probab=97.75 E-value=7.1e-05 Score=66.80 Aligned_cols=82 Identities=16% Similarity=0.187 Sum_probs=64.9
Q ss_pred EEEEEEcCC------------CCCceEEEecCCEEEEEEEECCCC-CceeeeCCCCCCCCCCCCCCCC-----CCcccCC
Q 012003 50 QQVIGINGQ------------FPGPILNVTTNWNVVVNVKNDLDE-PLLLTWNGVQHRKNSWQDGVLG-----TNCPIPA 111 (473)
Q Consensus 50 ~~~~~~Ng~------------~pgP~i~v~~Gd~v~v~v~N~l~~-~~siH~HG~~~~~~~~~DGv~~-----tq~~I~P 111 (473)
-..+++||+ -.-|+|.+++|+++++||.|.... ...++..|..... -+.||.+. ....|.|
T Consensus 36 ~d~~liNG~~~~~~~~~~~~~~~~~~~~v~~g~~~rlRliNa~~~~~~~~~i~gh~~~V-ia~DG~~v~p~~~~~l~l~~ 114 (159)
T PF00394_consen 36 PDSILINGKGRFDCSSADYTGGEPPVIKVKPGERYRLRLINAGASTSFNFSIDGHPMTV-IAADGVPVEPYKVDTLVLAP 114 (159)
T ss_dssp CSEEEETTBTCBTTCTTGSTTSTSGEEEEETTTEEEEEEEEESSS-BEEEEETTBCEEE-EEETTEEEEEEEESBEEE-T
T ss_pred CcEEEECCccccccccccccccccceEEEcCCcEEEEEEEeccCCeeEEEEeeccceeE-eeeccccccccccceEEeeC
Confidence 456799994 224899999999999999998664 5689999986543 56799874 2356899
Q ss_pred CCceEEEEEECCCccceeecc
Q 012003 112 GWNWTYQFQVKDQIGSFFYFP 132 (473)
Q Consensus 112 G~~~~Y~f~~~~~~Gt~wYH~ 132 (473)
|++++..+++++.+|.||.++
T Consensus 115 G~R~dvlv~~~~~~g~y~i~~ 135 (159)
T PF00394_consen 115 GQRYDVLVTADQPPGNYWIRA 135 (159)
T ss_dssp TEEEEEEEEECSCSSEEEEEE
T ss_pred CeEEEEEEEeCCCCCeEEEEE
Confidence 999999999953499999999
No 50
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=97.64 E-value=6.7e-05 Score=63.23 Aligned_cols=86 Identities=24% Similarity=0.213 Sum_probs=67.5
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEE-eecCceeeeeeeeEEEEcC
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV-ETEGSYTVQQNYTNMDIHV 272 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi-a~DG~~~~p~~~d~v~l~p 272 (473)
..+++||+.- -|+|+++.|++++++|.|... ....+|+||..+.-- ..||..-. ..-.|.|
T Consensus 15 ~~~~~ng~~p-------------GPtI~v~~Gd~v~i~~~N~l~-~~~siH~HG~~~~~~~~~DG~~~~----~~~~i~p 76 (117)
T PF07732_consen 15 KVWTYNGQFP-------------GPTIRVREGDTVRITVTNNLD-EPTSIHWHGLHQPPSPWMDGVPGV----TQCPIAP 76 (117)
T ss_dssp EEEEETTBSS-------------EEEEEEETTEEEEEEEEEESS-SGBSEEEETSBSTTGGGGSGGTTT----SGSSBST
T ss_pred EEEEECCCCC-------------CCEEEEEcCCeeEEEEEeccc-cccccccceeeeeeeeecCCcccc----cceeEEe
Confidence 4789999973 499999999999999999985 478899998654221 25775531 2245889
Q ss_pred CceEEEEEEeCCCCCcceEEEEeecc
Q 012003 273 GQSFSFLVTTDQNASSDYYIVASPRF 298 (473)
Q Consensus 273 GeR~dv~v~~~~~~g~~y~i~~~~~~ 298 (473)
|+++...+++++.+| .||...+...
T Consensus 77 G~~~~Y~~~~~~~~G-t~wYH~H~~~ 101 (117)
T PF07732_consen 77 GESFTYEFTANQQAG-TYWYHSHVHG 101 (117)
T ss_dssp TEEEEEEEEESSCSE-EEEEEECSTT
T ss_pred ecceeeeEeeecccc-ceeEeeCCCc
Confidence 999999999998788 9999988764
No 51
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.63 E-value=0.0023 Score=68.00 Aligned_cols=87 Identities=22% Similarity=0.243 Sum_probs=69.7
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeE-EEeecCceeeeeeeeEEEEcC
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLL-LVETEGSYTVQQNYTNMDIHV 272 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~-via~DG~~~~p~~~d~v~l~p 272 (473)
..++|||+.- -|.|+++.|+++.++++|-.. ..+.+|.||.... --..||.+ ...=.|.|
T Consensus 48 ~vi~iNG~fP-------------GP~I~~~~gD~ivV~v~N~~~-~~~sihWhGv~q~kn~w~DG~~-----~TqCPI~P 108 (563)
T KOG1263|consen 48 QVITINGQFP-------------GPTINAEEGDTIVVNVVNRLD-EPFSIHWHGVRQRKNPWQDGVY-----ITQCPIQP 108 (563)
T ss_pred eeEeecCCCC-------------CCeEEEEeCCEEEEEEEeCCC-CceEEEeccccccCCccccCCc-----cccCCcCC
Confidence 3689999973 399999999999999999954 6888888887543 33559955 34557899
Q ss_pred CceEEEEEEeCCCCCcceEEEEeecccC
Q 012003 273 GQSFSFLVTTDQNASSDYYIVASPRFVN 300 (473)
Q Consensus 273 GeR~dv~v~~~~~~g~~y~i~~~~~~~~ 300 (473)
||.|-.-+++++..| +||-.++.....
T Consensus 109 g~~~tY~F~v~~q~G-T~~yh~h~~~~R 135 (563)
T KOG1263|consen 109 GENFTYRFTVKDQIG-TLWYHSHVSWQR 135 (563)
T ss_pred CCeEEEEEEeCCcce-eEEEeecccccc
Confidence 999999999997778 999999886543
No 52
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=97.56 E-value=0.00038 Score=58.90 Aligned_cols=75 Identities=17% Similarity=0.158 Sum_probs=54.3
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
-.|++++||+ |++.|.-...++++.-+... + +|.- ...-.+|++|++.|. .+|+|-|.|-. |+.+|
T Consensus 54 A~v~v~pGDT--Vtw~~~d~~~Hnv~~~~~~~---~--~g~~--~~~~~~~~s~~~Tfe---~~G~Y~Y~C~P--H~~~g 119 (128)
T COG3794 54 AEVTVKPGDT--VTWVNTDSVGHNVTAVGGMD---P--EGSG--TLKAGINESFTHTFE---TPGEYTYYCTP--HPGMG 119 (128)
T ss_pred cEEEECCCCE--EEEEECCCCCceEEEeCCCC---c--cccc--ccccCCCcceEEEec---ccceEEEEecc--CCCCC
Confidence 5999999999 67888877788888766631 1 2211 123345577777775 48999999964 46789
Q ss_pred eeeEEEEEc
Q 012003 142 GYGGIIINN 150 (473)
Q Consensus 142 l~G~liV~~ 150 (473)
|.|.|+|++
T Consensus 120 M~G~IvV~~ 128 (128)
T COG3794 120 MKGKIVVGE 128 (128)
T ss_pred cEEEEEeCC
Confidence 999999974
No 53
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=97.26 E-value=0.0015 Score=54.52 Aligned_cols=74 Identities=18% Similarity=0.224 Sum_probs=50.0
Q ss_pred CceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhc
Q 012003 61 GPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA 139 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 139 (473)
.+.|+|++||+|+ ++|+. ..++++..-+- .. .|- ......||++|+|.|. ++|+|=|+|- .|..
T Consensus 41 P~~ltV~~GdTVt--w~~~~d~~~HnV~s~~~----~~-f~s---~~~~~~~G~t~s~Tf~---~~G~Y~Y~C~--pH~~ 105 (115)
T TIGR03102 41 PPAIRVDPGTTVV--WEWTGEGGGHNVVSDGD----GD-LDE---SERVSEEGTTYEHTFE---EPGIYLYVCV--PHEA 105 (115)
T ss_pred CCEEEECCCCEEE--EEECCCCCCEEEEECCC----CC-ccc---cccccCCCCEEEEEec---CCcEEEEEcc--CCCC
Confidence 4689999999966 66543 35666653210 00 110 1123578999999984 5899999997 3566
Q ss_pred CCeeeEEEEE
Q 012003 140 AGGYGGIIIN 149 (473)
Q Consensus 140 ~Gl~G~liV~ 149 (473)
+||.|.|+|+
T Consensus 106 ~gM~G~I~V~ 115 (115)
T TIGR03102 106 LGMKGAVVVE 115 (115)
T ss_pred CCCEEEEEEC
Confidence 7999999984
No 54
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=96.46 E-value=0.013 Score=51.53 Aligned_cols=87 Identities=18% Similarity=0.170 Sum_probs=56.9
Q ss_pred CCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCce--eEEE-eecCceeeeeeeeE
Q 012003 191 GVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN--LLLV-ETEGSYTVQQNYTN 267 (473)
Q Consensus 191 ~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~--~~vi-a~DG~~~~p~~~d~ 267 (473)
+....|.+||... |.|++++|+++++++.|......|.|.|+.+. +... ..||.... .+.
T Consensus 39 ~~~~~f~~~~~~~--------------P~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~---~~~ 101 (148)
T TIGR03095 39 PSMYSFEIHDLKN--------------PTIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFV---AGT 101 (148)
T ss_pred CCceeEEecCCCC--------------CEEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCcc---ccC
Confidence 3456899999875 99999999999999999876445666665432 2111 34664321 111
Q ss_pred EEEc---CCce--EEEEEEeCCCCCcceEEEEee
Q 012003 268 MDIH---VGQS--FSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 268 v~l~---pGeR--~dv~v~~~~~~g~~y~i~~~~ 296 (473)
-.+. +|+. .++.+++++ +| .||..++.
T Consensus 102 ~i~p~~~~g~~~~~~~tf~f~~-aG-tywyhC~~ 133 (148)
T TIGR03095 102 GFLPPPKSGKFGYTDFTYHFST-AG-TYWYLCTY 133 (148)
T ss_pred cccCCCCCCccceeEEEEECCC-Ce-EEEEEcCC
Confidence 1222 2444 488899884 68 99998653
No 55
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.14 E-value=0.02 Score=48.95 Aligned_cols=61 Identities=20% Similarity=0.242 Sum_probs=49.6
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
++.++|++|++++|++.|... ..+.+.++++. -+..|.|||+..+-+++++ +| .|+....+
T Consensus 60 P~~I~VkaGD~Vtl~vtN~d~-~~H~f~i~~~g----------------is~~I~pGet~TitF~adK-pG-~Y~y~C~~ 120 (135)
T TIGR03096 60 PEALVVKKGTPVKVTVENKSP-ISEGFSIDAYG----------------ISEVIKAGETKTISFKADK-AG-AFTIWCQL 120 (135)
T ss_pred CCEEEECCCCEEEEEEEeCCC-CccceEECCCC----------------cceEECCCCeEEEEEECCC-CE-EEEEeCCC
Confidence 488999999999999999886 46777777652 1467899999999999995 68 89986643
No 56
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=95.17 E-value=0.09 Score=43.10 Aligned_cols=61 Identities=16% Similarity=0.196 Sum_probs=42.3
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|+.++|.+.|.+.. .|.|.+++.. ....|.||+...+.+.++ .+| .|.+...+
T Consensus 34 P~~i~v~~G~~v~l~~~N~~~~-~h~~~i~~~~----------------~~~~l~~g~~~~~~f~~~-~~G-~y~~~C~~ 94 (104)
T PF13473_consen 34 PSTITVKAGQPVTLTFTNNDSR-PHEFVIPDLG----------------ISKVLPPGETATVTFTPL-KPG-EYEFYCTM 94 (104)
T ss_dssp S-EEEEETTCEEEEEEEE-SSS--EEEEEGGGT----------------EEEEE-TT-EEEEEEEE--S-E-EEEEB-SS
T ss_pred cCEEEEcCCCeEEEEEEECCCC-cEEEEECCCc----------------eEEEECCCCEEEEEEcCC-CCE-EEEEEcCC
Confidence 4789999999999999999876 4777776621 237789999999999777 578 89886653
No 57
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=95.07 E-value=0.13 Score=43.45 Aligned_cols=72 Identities=13% Similarity=0.046 Sum_probs=51.8
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--h-hh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--D-FQ 137 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~-~q 137 (473)
.+.|.+..|++|++.+++. +.-+++...++.. +..+.||+.-...|++ +++|+|++.|.. + .|
T Consensus 45 ~~~l~lp~g~~v~~~ltS~-DViHsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~gH 110 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSE-DVIHSFWIPELGI------------KMDAIPGRTNSVTFTP-DKPGTYYGQCAEYCGAGH 110 (120)
T ss_dssp SSEEEEETTSEEEEEEEES-SS-EEEEETTCTE------------EEEEBTTCEEEEEEEE-SSSEEEEEEE-SSSSTTG
T ss_pred cceecccccceEeEEEEcC-CccccccccccCc------------ccccccccceeeeeee-ccCCcEEEcCccccCcCc
Confidence 4799999999999999995 5555665555532 2346799999999999 589999999973 2 33
Q ss_pred hcCCeeeEEEE
Q 012003 138 RAAGGYGGIII 148 (473)
Q Consensus 138 ~~~Gl~G~liV 148 (473)
. -|.|-++|
T Consensus 111 ~--~M~~~v~V 119 (120)
T PF00116_consen 111 S--FMPGKVIV 119 (120)
T ss_dssp G--G-EEEEEE
T ss_pred C--CCeEEEEE
Confidence 3 36676665
No 58
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=94.72 E-value=0.26 Score=42.92 Aligned_cols=89 Identities=12% Similarity=0.089 Sum_probs=64.9
Q ss_pred CCCCceEEEecCCEEEEEEEECCC--CCceee---------eCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCcc
Q 012003 58 QFPGPILNVTTNWNVVVNVKNDLD--EPLLLT---------WNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIG 126 (473)
Q Consensus 58 ~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH---------~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~G 126 (473)
.+++-.+.++.|++++..+.|... ...++- -|.... +-+++-.....-+.||++-+..|..+ ++|
T Consensus 59 ~f~p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~---~Dme~d~~~~v~L~PG~s~elvv~ft-~~g 134 (158)
T COG4454 59 SFKPSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILA---DDMEHDDPNTVTLAPGKSGELVVVFT-GAG 134 (158)
T ss_pred ccCCCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhC---CccccCCcceeEeCCCCcEEEEEEec-CCc
Confidence 357789999999999999999743 111111 122221 22333222235689999999999996 799
Q ss_pred ceeeccChhhhhcCCeeeEEEEEc
Q 012003 127 SFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 127 t~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
.|=.-|-.-+|+..||.|-|.|.+
T Consensus 135 ~ye~~C~iPGHy~AGM~g~itV~p 158 (158)
T COG4454 135 KYEFACNIPGHYEAGMVGEITVSP 158 (158)
T ss_pred cEEEEecCCCcccCCcEEEEEeCC
Confidence 999999999999999999998864
No 59
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=94.69 E-value=0.27 Score=49.69 Aligned_cols=78 Identities=17% Similarity=0.180 Sum_probs=54.1
Q ss_pred CCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC--CCCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 58 QFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL--GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 58 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~--~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
++--..+.++.|+ +++.|+|....++.+-.- +|+. +....|.||.+.++.+++ .+|+|-|+| +
T Consensus 40 ~c~p~~~tVpAG~-~~f~V~N~~~~~~Efe~~----------~~~~vv~e~EnIaPG~s~~l~~~L--~pGtY~~~C--~ 104 (375)
T PRK10378 40 QCEPMTLTVNAGK-TQFIIQNHSQKALEWEIL----------KGVMVVEERENIAPGFSQKMTANL--QPGEYDMTC--G 104 (375)
T ss_pred ccccCceeeCCCC-EEEEEEeCCCCcceEEee----------ccccccccccccCCCCceEEEEec--CCceEEeec--C
Confidence 4545799999996 999999997665332111 2221 122468999999988777 499999999 3
Q ss_pred hhhcCCeeeEEEEEcCC
Q 012003 136 FQRAAGGYGGIIINNRD 152 (473)
Q Consensus 136 ~q~~~Gl~G~liV~~~~ 152 (473)
.+ ..+.|.|+|....
T Consensus 105 ~~--~~~~g~l~Vtg~~ 119 (375)
T PRK10378 105 LL--TNPKGKLIVKGEA 119 (375)
T ss_pred cC--CCCCceEEEeCCC
Confidence 33 3358999998643
No 60
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=94.65 E-value=0.16 Score=42.69 Aligned_cols=87 Identities=20% Similarity=0.184 Sum_probs=55.0
Q ss_pred CceEEEec-CCEEEEEEEECCCCCceeeeC--------------------CCCCCCCCCCC-CCCCCCcccCCCCceEEE
Q 012003 61 GPILNVTT-NWNVVVNVKNDLDEPLLLTWN--------------------GVQHRKNSWQD-GVLGTNCPIPAGWNWTYQ 118 (473)
Q Consensus 61 gP~i~v~~-Gd~v~v~v~N~l~~~~siH~H--------------------G~~~~~~~~~D-Gv~~tq~~I~PG~~~~Y~ 118 (473)
-..|.|+. |.+|.|+|+|....+...--| |+...--+..| -|.....-|.|||+.+.+
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 36899998 478999999984333222222 11111111111 111122458999999999
Q ss_pred EEECC-Cccc-eeeccChhhhhcCCeeeEEEE
Q 012003 119 FQVKD-QIGS-FFYFPSLDFQRAAGGYGGIII 148 (473)
Q Consensus 119 f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV 148 (473)
|+++. ++|+ |-|-|-.-.|.. .|.|.|.+
T Consensus 95 F~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~l 125 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCSFPGHWA-MMRGTVKL 125 (125)
T ss_pred EECCCCCCCCcceEEEcCCCcHH-hceEEEeC
Confidence 99863 4786 999999877776 58898753
No 61
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=93.62 E-value=0.64 Score=43.07 Aligned_cols=77 Identities=14% Similarity=0.070 Sum_probs=54.2
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQR 138 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~ 138 (473)
...|.+..|+.|++++++. +.- ||.... ...+ +..+-||..-+..|++ +++|+|...|.. |. .
T Consensus 116 ~~~l~vp~g~~v~~~~ts~-DV~-----Hsf~ip---~~~~----k~da~PG~~~~~~~~~-~~~G~y~~~c~e~cG~-~ 180 (201)
T TIGR02866 116 VNELVVPAGTPVRLQVTSK-DVI-----HSFWVP---ELGG----KIDAIPGQYNALWFNA-DEPGVYYGYCAELCGA-G 180 (201)
T ss_pred cCEEEEEcCCEEEEEEEeC-chh-----hccccc---ccCc----eEEecCCcEEEEEEEe-CCCEEEEEEehhhCCc-C
Confidence 3689999999999999985 222 444331 1111 3446789988889988 589999999973 22 2
Q ss_pred cCCeeeEEEEEcCC
Q 012003 139 AAGGYGGIIINNRD 152 (473)
Q Consensus 139 ~~Gl~G~liV~~~~ 152 (473)
-..|.+.++|.+++
T Consensus 181 h~~M~~~v~v~~~~ 194 (201)
T TIGR02866 181 HSLMLFKVVVVERE 194 (201)
T ss_pred ccCCeEEEEEECHH
Confidence 24688999998753
No 62
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=93.55 E-value=0.29 Score=44.50 Aligned_cols=88 Identities=24% Similarity=0.239 Sum_probs=60.2
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc-----eeEEEeecCceee-----ee
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH-----NLLLVETEGSYTV-----QQ 263 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~via~DG~~~~-----p~ 263 (473)
+.+-+||... ....+-+..|-++.++++|.+.. .|.|-+-.- ....+..||..+. +.
T Consensus 74 ~~~nfnGts~------------G~m~i~VPAGw~V~i~f~N~~~l-~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~ 140 (196)
T PF06525_consen 74 NPFNFNGTSN------------GQMTIYVPAGWNVQITFTNQESL-PHNLVIVQNDTPTPNNPPISSDGKILLYVGASPG 140 (196)
T ss_pred CceeeecccC------------CcEEEEEcCCCEEEEEEEcCCCC-CeeEEEEeCCCCCCCccccCCCCceeeeccCCCC
Confidence 3677888774 24889999999999999998765 666665321 1246677876652 11
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
....--|.+||+....+..- ++| .||+.+..
T Consensus 141 ~~~~~GI~~G~s~~~~~~~l-~aG-~YwlvC~i 171 (196)
T PF06525_consen 141 NYTSNGISSGQSASGVYNDL-PAG-YYWLVCGI 171 (196)
T ss_pred ccccCCccCCceeeEEEccC-CCc-eEEEEccC
Confidence 12233567999999777543 478 99997644
No 63
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=92.29 E-value=0.38 Score=39.03 Aligned_cols=70 Identities=14% Similarity=0.091 Sum_probs=42.3
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|. |.+. ..|.+.++.-.+..-+.+.. .....+.+.+.||+++++.++. +| .|...+.
T Consensus 16 P~~i~v~~G~~V~~~--N~~~-~~H~~~~~~~~~~~~~~~~~--~~~~~~~~~~~pG~t~~~tF~~---~G-~y~y~C~ 85 (99)
T TIGR02656 16 PAKISIAAGDTVEWV--NNKG-GPHNVVFDEDAVPAGVKELA--KSLSHKDLLNSPGESYEVTFST---PG-TYTFYCE 85 (99)
T ss_pred CCEEEECCCCEEEEE--ECCC-CCceEEECCCCCccchhhhc--ccccccccccCCCCEEEEEeCC---CE-EEEEEcC
Confidence 477999999998765 7654 35666665332111000000 0111256788999999996543 67 8988765
No 64
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=89.26 E-value=4.3 Score=38.76 Aligned_cols=78 Identities=8% Similarity=-0.091 Sum_probs=59.6
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-hhhhc
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRA 139 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 139 (473)
...|.+..|.+|+++++-. +.-+++...++.. +.-.-||...++.+++ +++|+|.-+|+- .+..-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~-DViHsF~IP~l~~------------k~d~iPG~~~~~~~~~-~~~G~Y~g~Cae~CG~gH 201 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSA-DVIHSFWIPQLGG------------KIDAIPGMTTELWLTA-NKPGTYRGICAEYCGPGH 201 (247)
T ss_pred cceEEEeCCCeEEEEEEec-hhceeEEecCCCc------------eeeecCCceEEEEEec-CCCeEEEEEcHhhcCCCc
Confidence 3899999999999999876 5556666555532 2335789888999988 689999999983 33444
Q ss_pred CCeeeEEEEEcCC
Q 012003 140 AGGYGGIIINNRD 152 (473)
Q Consensus 140 ~Gl~G~liV~~~~ 152 (473)
..|.|.++|.+++
T Consensus 202 ~~M~~~v~vvs~~ 214 (247)
T COG1622 202 SFMRFKVIVVSQE 214 (247)
T ss_pred ccceEEEEEEcHH
Confidence 4699999999865
No 65
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=89.12 E-value=1.6 Score=38.03 Aligned_cols=75 Identities=17% Similarity=0.247 Sum_probs=52.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEe------CceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcce
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQ------NHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDY 290 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~------gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y 290 (473)
...++++.|+++|+-+.|.+.. .|.|-++ +|.-..+.+| ..+--...++.|.||+...+.+++.+ +| .|
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el-~hef~~~~~~~~~~~~~~~~~~~--Dme~d~~~~v~L~PG~s~elvv~ft~-~g-~y 136 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGEL-KHEFTMDAPDKNLEHVTHMILAD--DMEHDDPNTVTLAPGKSGELVVVFTG-AG-KY 136 (158)
T ss_pred CCcccccCCcEEeeeecCcccc-eEEEeccCccccchhHHHhhhCC--ccccCCcceeEeCCCCcEEEEEEecC-Cc-cE
Confidence 3568999999999999998854 6777665 2221222222 11123357899999999999999995 57 89
Q ss_pred EEEEee
Q 012003 291 YIVASP 296 (473)
Q Consensus 291 ~i~~~~ 296 (473)
.++...
T Consensus 137 e~~C~i 142 (158)
T COG4454 137 EFACNI 142 (158)
T ss_pred EEEecC
Confidence 887754
No 66
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=88.22 E-value=4.1 Score=34.33 Aligned_cols=61 Identities=20% Similarity=0.266 Sum_probs=46.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
...+.++.|+.++|++.+.. -.|.|.+.+..++ +.+-||+.-.+-++++ .+| .|+++.+-
T Consensus 45 ~~~l~lp~g~~v~~~ltS~D--ViHsf~ip~~~~k----------------~d~~PG~~~~~~~~~~-~~G-~y~~~C~e 104 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSED--VIHSFWIPELGIK----------------MDAIPGRTNSVTFTPD-KPG-TYYGQCAE 104 (120)
T ss_dssp SSEEEEETTSEEEEEEEESS--S-EEEEETTCTEE----------------EEEBTTCEEEEEEEES-SSE-EEEEEE-S
T ss_pred cceecccccceEeEEEEcCC--ccccccccccCcc----------------cccccccceeeeeeec-cCC-cEEEcCcc
Confidence 36799999999999999955 4588888876543 4456888888888888 468 99998764
Q ss_pred c
Q 012003 297 R 297 (473)
Q Consensus 297 ~ 297 (473)
.
T Consensus 105 ~ 105 (120)
T PF00116_consen 105 Y 105 (120)
T ss_dssp S
T ss_pred c
Confidence 3
No 67
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=87.32 E-value=10 Score=29.60 Aligned_cols=66 Identities=18% Similarity=0.311 Sum_probs=36.8
Q ss_pred EEEEEEeEeCCCceeEEEEe-Ccee--EEEeecCceee--------eeeeeEEEEcCCceEEEEEEeCCC---CCcceEE
Q 012003 227 TYRLRVHNVGISTSLNFRIQ-NHNL--LLVETEGSYTV--------QQNYTNMDIHVGQSFSFLVTTDQN---ASSDYYI 292 (473)
Q Consensus 227 ~~rlRliN~~~~~~~~~~i~-gh~~--~via~DG~~~~--------p~~~d~v~l~pGeR~dv~v~~~~~---~g~~y~i 292 (473)
...|.+.|.+.. ...|.+. |+.+ .|...+|..+- -+......|.|||...+-.+.+.. +| +|.+
T Consensus 3 ~~~l~v~N~s~~-~v~l~f~sgq~~D~~v~d~~g~~vwrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G-~Y~~ 80 (82)
T PF12690_consen 3 EFTLTVTNNSDE-PVTLQFPSGQRYDFVVKDKEGKEVWRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPG-EYTL 80 (82)
T ss_dssp EEEEEEEE-SSS--EEEEESSS--EEEEEE-TT--EEEETTTT-------EEEEE-TT-EEEEEEEESS----SE-EEEE
T ss_pred EEEEEEEeCCCC-eEEEEeCCCCEEEEEEECCCCCEEEEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCc-eEEE
Confidence 356788888754 5666654 5544 44445666652 134568999999999999988865 46 8988
Q ss_pred EE
Q 012003 293 VA 294 (473)
Q Consensus 293 ~~ 294 (473)
.|
T Consensus 81 ~a 82 (82)
T PF12690_consen 81 EA 82 (82)
T ss_dssp EE
T ss_pred eC
Confidence 64
No 68
>COG4263 NosZ Nitrous oxide reductase [Energy production and conversion]
Probab=86.94 E-value=0.99 Score=45.94 Aligned_cols=78 Identities=19% Similarity=0.158 Sum_probs=49.3
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChh-hhhcC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-FQRAA 140 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-~q~~~ 140 (473)
-++.|++||.|++.++|--...-.+| |.-. + .-|+ ...+.|-++-.|.|.+ +.+|.+||-|--. .-+.+
T Consensus 558 ~ef~Vkq~DEVt~l~tnld~Ved~th--gfv~---p-~~~v---~~~v~pq~tasvtf~a-~kpgv~w~ycs~fchalh~ 627 (637)
T COG4263 558 TEFKVKQGDEVTVLTTNLDEVEDLTH--GFVI---P-NYGV---NMEVKPQRTASVTFYA-DKPGVAWYYCSWFCHALHM 627 (637)
T ss_pred EEEEEecCcEEEEEecccceeccccc--eeee---c-cCce---EEEEccCCceEEEEEc-cCCeeeehhhhhHHHHHHH
Confidence 46778888888888887643333333 2211 0 1111 1347888999999999 5899999987532 22333
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
-|.|-++|+
T Consensus 628 em~~rmlve 636 (637)
T COG4263 628 EMAGRMLVE 636 (637)
T ss_pred hhccceeec
Confidence 467788876
No 69
>PRK02888 nitrous-oxide reductase; Validated
Probab=82.82 E-value=3.6 Score=44.26 Aligned_cols=62 Identities=21% Similarity=0.293 Sum_probs=43.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCC--CceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 012003 217 YQLINVEPGKTYRLRVHNVGI--STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~ 294 (473)
...++|+.|+.|+|+|.|.-. .-.|.|.|.++.. .+.+.||+...+.+++++ +| .||+.+
T Consensus 554 p~~i~Vk~GDeVt~~lTN~d~~~DViHGF~Ip~~nI----------------~~dv~PG~t~svtF~adk-PG-vy~~~C 615 (635)
T PRK02888 554 LREFTVKQGDEVTVIVTNLDKVEDLTHGFAIPNYGV----------------NMEVAPQATASVTFTADK-PG-VYWYYC 615 (635)
T ss_pred CceEEecCCCEEEEEEEeCCcccccccceeecccCc----------------cEEEcCCceEEEEEEcCC-CE-EEEEEC
Confidence 355778888888888888532 2345566655542 246779999999999995 68 899976
Q ss_pred ee
Q 012003 295 SP 296 (473)
Q Consensus 295 ~~ 296 (473)
+-
T Consensus 616 te 617 (635)
T PRK02888 616 TW 617 (635)
T ss_pred Cc
Confidence 54
No 70
>PRK02710 plastocyanin; Provisional
Probab=80.23 E-value=5.3 Score=33.51 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=38.9
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++| +|.+.. .|.+.+++. ++. .-..+.+.||+++++.++. +| .|.....
T Consensus 46 P~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~-------~~~-----~~~~~~~~pg~t~~~tF~~---~G-~y~y~C~ 105 (119)
T PRK02710 46 PSTLTIKAGDTVKW--VNNKLA-PHNAVFDGA-------KEL-----SHKDLAFAPGESWEETFSE---AG-TYTYYCE 105 (119)
T ss_pred CCEEEEcCCCEEEE--EECCCC-CceEEecCC-------ccc-----cccccccCCCCEEEEEecC---CE-EEEEEcC
Confidence 47799999998776 476543 566655432 111 1224668899999876654 57 8887664
No 71
>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]
Probab=79.03 E-value=2.1 Score=35.47 Aligned_cols=54 Identities=19% Similarity=0.283 Sum_probs=33.8
Q ss_pred EEEEECCCCCc---eeeeCCCCCCC---CCCCCCCCCCCcccCCCCceEEEEEEC--CCccc
Q 012003 74 VNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQFQVK--DQIGS 127 (473)
Q Consensus 74 v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~~~--~~~Gt 127 (473)
|++.|....+. +=|||=-+..+ .-..+||-|.|.-|+||++|+|.=-.+ ...|+
T Consensus 34 itI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~y~YtSg~~l~Tp~G~ 95 (126)
T COG2967 34 VTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGT 95 (126)
T ss_pred EEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCceEEcCCcCccCCcce
Confidence 66667665443 55888332211 223577777888899999999965443 23555
No 72
>TIGR03079 CH4_NH3mon_ox_B methane monooxygenase/ammonia monooxygenase, subunit B. Both ammonia oxidizers such as Nitrosomonas europaea and methanotrophs (obligate methane oxidizers) such as Methylococcus capsulatus each can grow only on their own characteristic substrate. However, both groups have the ability to oxidize both substrates, and so the relevant enzymes must be named here according to their ability to oxidze both. The protein family represented here reflects subunit B of both the particulate methane monooxygenase of methylotrophs and the ammonia monooxygenase of nitrifying bacteria.
Probab=78.39 E-value=21 Score=35.68 Aligned_cols=62 Identities=21% Similarity=0.284 Sum_probs=37.2
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCC--------ceeeeCCC-CC--CCCCCCC-----CCCC-CCcccCCCCceEEE
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEP--------LLLTWNGV-QH--RKNSWQD-----GVLG-TNCPIPAGWNWTYQ 118 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~--------~siH~HG~-~~--~~~~~~D-----Gv~~-tq~~I~PG~~~~Y~ 118 (473)
|=.+||-+++++ +.|+|+.+++ .+++|-.- .+ ..+..-| |..+ .+.||+|||+.+.+
T Consensus 276 ~Y~VPGR~l~~~------~~VTN~g~~~vrlgEF~TA~vRFlN~~~v~~~~~~yP~~lla~GL~v~d~~pI~PGETr~v~ 349 (399)
T TIGR03079 276 NYDVPGRALRVT------MEITNNGDQVISIGEFTTAGIRFMNANGVRVLDPDYPRELLAEGLEVDDQSAIAPGETVEVK 349 (399)
T ss_pred EEecCCcEEEEE------EEEEcCCCCceEEEeEeecceEeeCcccccccCCCChHHHhhccceeCCCCCcCCCcceEEE
Confidence 335677777643 7777876543 23444433 11 1122222 5555 46799999999999
Q ss_pred EEECC
Q 012003 119 FQVKD 123 (473)
Q Consensus 119 f~~~~ 123 (473)
.++.|
T Consensus 350 v~aqd 354 (399)
T TIGR03079 350 MEAKD 354 (399)
T ss_pred EEEeh
Confidence 98853
No 73
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=72.78 E-value=5.7 Score=32.04 Aligned_cols=64 Identities=17% Similarity=0.155 Sum_probs=40.9
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee--e----eeeeeEEEEcCCceEEEEEEeCCCCCcce
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT--V----QQNYTNMDIHVGQSFSFLVTTDQNASSDY 290 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~--~----p~~~d~v~l~pGeR~dv~v~~~~~~g~~y 290 (473)
+..+++++|++++ ++|.+.. .|.+.+.. |+... + +..-.+..+.+|+.+++-++ .+| .|
T Consensus 16 P~~i~V~~G~tV~--~~n~~~~-~Hnv~~~~--------~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~---~~G-~y 80 (99)
T PF00127_consen 16 PSEITVKAGDTVT--FVNNDSM-PHNVVFVA--------DGMPAGADSDYVPPGDSSPLLAPGETYSVTFT---KPG-TY 80 (99)
T ss_dssp SSEEEEETTEEEE--EEEESSS-SBEEEEET--------TSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEE---SSE-EE
T ss_pred CCEEEECCCCEEE--EEECCCC-CceEEEec--------ccccccccccccCccccceecCCCCEEEEEeC---CCe-EE
Confidence 4789999999875 5665433 45555543 22111 0 11115678999999999877 467 89
Q ss_pred EEEEe
Q 012003 291 YIVAS 295 (473)
Q Consensus 291 ~i~~~ 295 (473)
.....
T Consensus 81 ~y~C~ 85 (99)
T PF00127_consen 81 EYYCT 85 (99)
T ss_dssp EEEET
T ss_pred EEEcC
Confidence 88774
No 74
>PF01835 A2M_N: MG2 domain; InterPro: IPR002890 The proteinase-binding alpha-macroglobulins (A2M) [] are large glycoproteins found in the plasma of vertebrates, in the hemolymph of some invertebrates and in reptilian and avian egg white. A2M-like proteins are able to inhibit all four classes of proteinases by a 'trapping' mechanism. They have a peptide stretch, called the 'bait region', which contains specific cleavage sites for different proteinases. When a proteinase cleaves the bait region, a conformational change is induced in the protein, thus trapping the proteinase. The entrapped enzyme remains active against low molecular weight substrates, whilst its activity toward larger substrates is greatly reduced, due to steric hindrance. Following cleavage in the bait region, a thiol ester bond, formed between the side chains of a cysteine and a glutamine, is cleaved and mediates the covalent binding of the A2M-like protein to the proteinase. This family includes the N-terminal region of the alpha-2-macroglobulin family. The inhibitor domains belong to MEROPS inhibitor family I39.; GO: 0004866 endopeptidase inhibitor activity; PDB: 2B39_B 3KLS_B 3PRX_C 3KM9_B 3PVM_C 3CU7_A 4E0S_A 4A5W_A 4ACQ_C 2P9R_B ....
Probab=71.19 E-value=19 Score=28.71 Aligned_cols=72 Identities=13% Similarity=0.094 Sum_probs=41.1
Q ss_pred EeCCcEEEEEEe--EeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCC--CCcceEEEEeec
Q 012003 222 VEPGKTYRLRVH--NVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQN--ASSDYYIVASPR 297 (473)
Q Consensus 222 v~~G~~~rlRli--N~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~--~g~~y~i~~~~~ 297 (473)
-+|||++.||++ +... ......-....++|..-+|..+..... ........++.-+.+++. .| .|.|++...
T Consensus 11 YrPGetV~~~~~~~~~~~-~~~~~~~~~~~v~i~dp~g~~v~~~~~--~~~~~~G~~~~~~~lp~~~~~G-~y~i~~~~~ 86 (99)
T PF01835_consen 11 YRPGETVHFRAIVRDLDN-DFKPPANSPVTVTIKDPSGNEVFRWSV--NTTNENGIFSGSFQLPDDAPLG-TYTIRVKTD 86 (99)
T ss_dssp E-TTSEEEEEEEEEEECT-TCSCESSEEEEEEEEETTSEEEEEEEE--EETTCTTEEEEEEE--SS---E-EEEEEEEET
T ss_pred cCCCCEEEEEEEEecccc-ccccccCCceEEEEECCCCCEEEEEEe--eeeCCCCEEEEEEECCCCCCCE-eEEEEEEEc
Confidence 579999999999 6652 111111122335666666666532111 133567788888887754 36 999998774
No 75
>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known. It is found on proteins which are bacterial galactosidases [].; PDB: 1EUT_A 2BZD_A 1WCQ_C 2BER_A 1W8O_A 1EUU_A 1W8N_A.
Probab=71.14 E-value=29 Score=26.36 Aligned_cols=67 Identities=19% Similarity=0.327 Sum_probs=30.1
Q ss_pred EeCCcEE--EEEEeEeCCCc--eeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeC--C--CCCcceEEE
Q 012003 222 VEPGKTY--RLRVHNVGIST--SLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTD--Q--NASSDYYIV 293 (473)
Q Consensus 222 v~~G~~~--rlRliN~~~~~--~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~--~--~~g~~y~i~ 293 (473)
+++|+.. .+.|-|.+... ...+++..=.-+-+..+ +..+. .|.||+...+-++.. . .+| +|.|.
T Consensus 1 v~~G~~~~~~~tv~N~g~~~~~~v~~~l~~P~GW~~~~~-----~~~~~--~l~pG~s~~~~~~V~vp~~a~~G-~y~v~ 72 (78)
T PF10633_consen 1 VTPGETVTVTLTVTNTGTAPLTNVSLSLSLPEGWTVSAS-----PASVP--SLPPGESVTVTFTVTVPADAAPG-TYTVT 72 (78)
T ss_dssp --TTEEEEEEEEEE--SSS-BSS-EEEEE--TTSE---E-----EEEE----B-TTSEEEEEEEEEE-TT--SE-EEEEE
T ss_pred CCCCCEEEEEEEEEECCCCceeeEEEEEeCCCCccccCC-----ccccc--cCCCCCEEEEEEEEECCCCCCCc-eEEEE
Confidence 3566665 78888988542 34444432111112222 32233 789997776666543 2 346 89887
Q ss_pred Eee
Q 012003 294 ASP 296 (473)
Q Consensus 294 ~~~ 296 (473)
+..
T Consensus 73 ~~a 75 (78)
T PF10633_consen 73 VTA 75 (78)
T ss_dssp EEE
T ss_pred EEE
Confidence 754
No 76
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=68.65 E-value=17 Score=28.38 Aligned_cols=57 Identities=19% Similarity=0.207 Sum_probs=29.5
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC----cccCCCCceEEEEEECCC---cccee
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN----CPIPAGWNWTYQFQVKDQ---IGSFF 129 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq----~~I~PG~~~~Y~f~~~~~---~Gt~w 129 (473)
=+|+-.-|.+..+.|.|.-.+. + =-|++|-..+| ..|+||++.+|++..+.. +|+|.
T Consensus 16 v~l~f~sgq~~D~~v~d~~g~~---------v--wrwS~~~~FtQal~~~~l~pGe~~~~~~~~~~~~~~~G~Y~ 79 (82)
T PF12690_consen 16 VTLQFPSGQRYDFVVKDKEGKE---------V--WRWSDGKMFTQALQEETLEPGESLTYEETWDLKDLSPGEYT 79 (82)
T ss_dssp EEEEESSS--EEEEEE-TT--E---------E--EETTTT-------EEEEE-TT-EEEEEEEESS----SEEEE
T ss_pred EEEEeCCCCEEEEEEECCCCCE---------E--EEecCCchhhheeeEEEECCCCEEEEEEEECCCCCCCceEE
Confidence 3566666666666666552211 1 13567765443 569999999999999733 68885
No 77
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=67.22 E-value=46 Score=28.13 Aligned_cols=79 Identities=20% Similarity=0.280 Sum_probs=50.7
Q ss_pred ceEEEEeC-CcEEEEEEeEeCCCc----eeEEEEe-CceeEEEeecC-------ceeee----eeeeEEEEcCCceEEEE
Q 012003 217 YQLINVEP-GKTYRLRVHNVGIST----SLNFRIQ-NHNLLLVETEG-------SYTVQ----QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~-gh~~~via~DG-------~~~~p----~~~d~v~l~pGeR~dv~ 279 (473)
...|+|++ ++.+.+.|-|.|... .|++-|- .-.++-|+.|| .|+.+ ....+=.|++||..+|.
T Consensus 15 ~~~i~V~a~~k~vtv~l~h~G~lpk~~MgHN~Vl~k~~d~~~v~~~g~~ag~~~~Yvp~~d~~ViAhTkliggGes~svt 94 (125)
T TIGR02695 15 TKSISVPKSCKEFTVNLKHTGKLPKAVMGHNWVLAKSADMQAVATDGMSAGADNNYVKPGDARVIAHTKVIGGGEKTSVT 94 (125)
T ss_pred ccEEEEcCCCcEEEEEEecCCcCchhccCccEEEeccccHHHHHHHHHhcccccCccCCCCcceEEEccccCCCceEEEE
Confidence 37799998 488999999998542 3444431 22333333333 44532 23456689999999999
Q ss_pred EEeCC-CCCcceEEEEe
Q 012003 280 VTTDQ-NASSDYYIVAS 295 (473)
Q Consensus 280 v~~~~-~~g~~y~i~~~ 295 (473)
++++. .+|++|....+
T Consensus 95 F~~~~l~~g~~Y~f~CS 111 (125)
T TIGR02695 95 FDVSKLSAGEDYTFFCS 111 (125)
T ss_pred EECCCCCCCCcceEEEc
Confidence 99873 34536987664
No 78
>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins.; PDB: 2KUT_A 2L0D_A 3IDU_A 2KL6_A.
Probab=66.45 E-value=61 Score=25.33 Aligned_cols=67 Identities=21% Similarity=0.306 Sum_probs=40.9
Q ss_pred EEeCCcEE--EEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEE-EEcCCceEEEEEEeCC-CCCcceEEEEee
Q 012003 221 NVEPGKTY--RLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNM-DIHVGQSFSFLVTTDQ-NASSDYYIVASP 296 (473)
Q Consensus 221 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v-~l~pGeR~dv~v~~~~-~~g~~y~i~~~~ 296 (473)
.+.+|+.+ .+.|-|.|....-.+.+. +-.||..+ ....| .|.||+...+-+...- .+| .|.+++..
T Consensus 14 ~~~~g~~~~i~~~V~N~G~~~~~~~~v~------~~~~~~~~---~~~~i~~L~~g~~~~v~~~~~~~~~G-~~~i~~~i 83 (101)
T PF07705_consen 14 NVVPGEPVTITVTVKNNGTADAENVTVR------LYLDGNSV---STVTIPSLAPGESETVTFTWTPPSPG-SYTIRVVI 83 (101)
T ss_dssp EEETTSEEEEEEEEEE-SSS-BEEEEEE------EEETTEEE---EEEEESEB-TTEEEEEEEEEE-SS-C-EEEEEEEE
T ss_pred cccCCCEEEEEEEEEECCCCCCCCEEEE------EEECCcee---ccEEECCcCCCcEEEEEEEEEeCCCC-eEEEEEEE
Confidence 45677777 678899987644333333 33466554 23344 7889999888887653 467 88888866
Q ss_pred c
Q 012003 297 R 297 (473)
Q Consensus 297 ~ 297 (473)
.
T Consensus 84 D 84 (101)
T PF07705_consen 84 D 84 (101)
T ss_dssp S
T ss_pred e
Confidence 5
No 79
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=65.73 E-value=1.2e+02 Score=28.53 Aligned_cols=77 Identities=13% Similarity=-0.121 Sum_probs=50.0
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-hhhhc
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRA 139 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~ 139 (473)
...|.+..|..|++.+++. +.-|+....++.. +.-.-||..-...|++ +++|+|+-.|.- -+..-
T Consensus 139 ~n~l~lP~~~~v~~~~ts~-DViHsf~ip~~~~------------k~d~~Pg~~~~~~~~~-~~~g~y~~~C~e~CG~~H 204 (228)
T MTH00140 139 DNRLVLPYSVDTRVLVTSA-DVIHSWTVPSLGV------------KVDAIPGRLNQLSFEP-KRPGVFYGQCSEICGANH 204 (228)
T ss_pred CCeEEEeeCcEEEEEEEcC-ccccceeccccCc------------eeECCCCcceeEEEEe-CCCEEEEEECccccCcCc
Confidence 3679999999999999995 3333333222211 2234588888888888 589999988873 11122
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
..|.+.++|.++
T Consensus 205 ~~M~~~v~v~~~ 216 (228)
T MTH00140 205 SFMPIVVEAVPL 216 (228)
T ss_pred CCCeEEEEEECH
Confidence 246777777664
No 80
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=64.54 E-value=14 Score=36.90 Aligned_cols=70 Identities=24% Similarity=0.339 Sum_probs=36.0
Q ss_pred ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCc--------eeeeCCCCCCCC--C------CCCCCCC-CCcccC
Q 012003 48 DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPL--------LLTWNGVQHRKN--S------WQDGVLG-TNCPIP 110 (473)
Q Consensus 48 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--------siH~HG~~~~~~--~------~~DGv~~-tq~~I~ 110 (473)
+..++-.-|=++||-+++++ ++|+|+.+.+. +++|-.-..... . +.+|..+ ...||+
T Consensus 249 V~~~v~~A~Y~vpgR~l~~~------l~VtN~g~~pv~LgeF~tA~vrFln~~v~~~~~~~P~~l~A~~gL~vs~~~pI~ 322 (381)
T PF04744_consen 249 VKVKVTDATYRVPGRTLTMT------LTVTNNGDSPVRLGEFNTANVRFLNPDVPTDDPDYPDELLAERGLSVSDNSPIA 322 (381)
T ss_dssp EEEEEEEEEEESSSSEEEEE------EEEEEESSS-BEEEEEESSS-EEE-TTT-SS-S---TTTEETT-EEES--S-B-
T ss_pred eEEEEeccEEecCCcEEEEE------EEEEcCCCCceEeeeEEeccEEEeCcccccCCCCCchhhhccCcceeCCCCCcC
Confidence 44555555556788888654 78889876554 344433322111 0 1112223 346999
Q ss_pred CCCceEEEEEECC
Q 012003 111 AGWNWTYQFQVKD 123 (473)
Q Consensus 111 PG~~~~Y~f~~~~ 123 (473)
|||+.+.+..+.|
T Consensus 323 PGETrtl~V~a~d 335 (381)
T PF04744_consen 323 PGETRTLTVEAQD 335 (381)
T ss_dssp TT-EEEEEEEEE-
T ss_pred CCceEEEEEEeeh
Confidence 9999999999853
No 81
>PF14344 DUF4397: Domain of unknown function (DUF4397)
Probab=63.49 E-value=85 Score=25.96 Aligned_cols=21 Identities=10% Similarity=0.273 Sum_probs=11.5
Q ss_pred EEEEeEeCCC-ceeEEEEeCce
Q 012003 229 RLRVHNVGIS-TSLNFRIQNHN 249 (473)
Q Consensus 229 rlRliN~~~~-~~~~~~i~gh~ 249 (473)
++|++|++.. ..+.+.++|-.
T Consensus 3 ~Vr~~hasp~~~~vdv~~dg~~ 24 (122)
T PF14344_consen 3 RVRFIHASPDAPAVDVYVDGTK 24 (122)
T ss_pred EEEEEEcCCCCccEEEEECCEE
Confidence 5666666653 35555554443
No 82
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=59.91 E-value=49 Score=33.65 Aligned_cols=78 Identities=14% Similarity=0.145 Sum_probs=49.9
Q ss_pred CCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 012003 215 IPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 215 ~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~ 294 (473)
|.+..+++++|+ ++|.|.|.+.. . +.|+++. |..+. -..=.|+||.+..+.+++. +| +|.+.+
T Consensus 41 c~p~~~tVpAG~-~~f~V~N~~~~-~-------~Efe~~~--~~~vv---~e~EnIaPG~s~~l~~~L~--pG-tY~~~C 103 (375)
T PRK10378 41 CEPMTLTVNAGK-TQFIIQNHSQK-A-------LEWEILK--GVMVV---EERENIAPGFSQKMTANLQ--PG-EYDMTC 103 (375)
T ss_pred cccCceeeCCCC-EEEEEEeCCCC-c-------ceEEeec--ccccc---ccccccCCCCceEEEEecC--Cc-eEEeec
Confidence 456889999996 89999999865 3 3344442 22110 0122789998888887774 68 999877
Q ss_pred eecccCCccCCccceEEEEEecCC
Q 012003 295 SPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 295 ~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
.+. ....+.|.+.|.
T Consensus 104 ~~~---------~~~~g~l~Vtg~ 118 (375)
T PRK10378 104 GLL---------TNPKGKLIVKGE 118 (375)
T ss_pred CcC---------CCCCceEEEeCC
Confidence 331 112456676654
No 83
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=59.20 E-value=50 Score=25.87 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=40.9
Q ss_pred CceEEEec---CCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeec
Q 012003 61 GPILNVTT---NWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYF 131 (473)
Q Consensus 61 gP~i~v~~---Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH 131 (473)
.|.+.++. ...|+|+|.|....+..+....... ..+.+ .+..|+||++.+..|.+. ..--||.
T Consensus 8 ~~~v~~~~~~~~g~l~l~l~N~g~~~~~~~v~~~~y-----~~~~~-~~~~v~ag~~~~~~w~l~--~s~gwYD 73 (89)
T PF05506_consen 8 APEVTARYDPATGNLRLTLSNPGSAAVTFTVYDNAY-----GGGGP-WTYTVAAGQTVSLTWPLA--ASGGWYD 73 (89)
T ss_pred CCEEEEEEECCCCEEEEEEEeCCCCcEEEEEEeCCc-----CCCCC-EEEEECCCCEEEEEEeec--CCCCcEE
Confidence 45555542 3489999999987777766665211 11111 246799999999999883 3444664
No 84
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=59.08 E-value=13 Score=31.56 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=15.7
Q ss_pred CCCCCCCCcccCCCCceEEE
Q 012003 99 QDGVLGTNCPIPAGWNWTYQ 118 (473)
Q Consensus 99 ~DGv~~tq~~I~PG~~~~Y~ 118 (473)
.+||-|.|.-|.||++|.|.
T Consensus 66 G~GVVG~qP~L~PGe~F~Y~ 85 (127)
T PRK05461 66 GEGVVGEQPVLAPGESFEYT 85 (127)
T ss_pred CCceecCCceECCCCCeEEe
Confidence 56666667779999998884
No 85
>PF04151 PPC: Bacterial pre-peptidase C-terminal domain; InterPro: IPR007280 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. This domain is normally found at the C terminus of secreted archaeal and bacterial peptidases, the majority of which belong to MEROPS peptidase families M4 (vibriolysin, IPR001570 from INTERPRO), M9A amd M9B (microbial collangenase, IPR002169 from INTERPRO), M28 (aminopeptidase Ap1, IPR007484 from INTERPRO) and S8 (subtilisin family peptidases, IPR000209 from INTERPRO).; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 4DY5_B 4DXZ_A 4DY3_B 3JQW_A 3JQX_C 1NQJ_B 1NQD_A 2O8O_A 1WMF_A 1WME_A ....
Probab=58.94 E-value=51 Score=24.34 Aligned_cols=65 Identities=20% Similarity=0.244 Sum_probs=36.5
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
-.++++.|+++++.+-+.+. +..+.|...+|..+....... -..+..-.+.+++. .+| +|.|+..
T Consensus 5 y~f~v~ag~~l~i~l~~~~~---------d~dl~l~~~~g~~~~~~d~~~--~~~~~~~~i~~~~~-~~G-tYyi~V~ 69 (70)
T PF04151_consen 5 YSFTVPAGGTLTIDLSGGSG---------DADLYLYDSNGNSLASYDDSS--QSGGNDESITFTAP-AAG-TYYIRVY 69 (70)
T ss_dssp EEEEESTTEEEEEEECETTS---------SEEEEEEETTSSSCEECCCCT--CETTSEEEEEEEES-SSE-EEEEEEE
T ss_pred EEEEEcCCCEEEEEEcCCCC---------CeEEEEEcCCCCchhhheecC--CCCCCccEEEEEcC-CCE-EEEEEEE
Confidence 56889999999988866554 233666666665432211111 01122233334554 467 8988764
No 86
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=58.74 E-value=35 Score=31.48 Aligned_cols=60 Identities=20% Similarity=0.267 Sum_probs=43.8
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
..+.++.|+.+||++-+... .|.|.+.+... .+..-||..-.+.+++++ +| .|..+++-.
T Consensus 117 ~~l~vp~g~~v~~~~ts~DV--~Hsf~ip~~~~----------------k~da~PG~~~~~~~~~~~-~G-~y~~~c~e~ 176 (201)
T TIGR02866 117 NELVVPAGTPVRLQVTSKDV--IHSFWVPELGG----------------KIDAIPGQYNALWFNADE-PG-VYYGYCAEL 176 (201)
T ss_pred CEEEEEcCCEEEEEEEeCch--hhcccccccCc----------------eEEecCCcEEEEEEEeCC-CE-EEEEEehhh
Confidence 67999999999999888553 35555554432 244568888888888884 67 899887543
No 87
>PF05938 Self-incomp_S1: Plant self-incompatibility protein S1; InterPro: IPR010264 This family consists of a series of plant proteins which are related to the Papaver rhoeas S1 self-incompatibility protein. Self-incompatibility (SI) is the single most important outbreeding device found in angiosperms and is a mechanism that regulates the acceptance or rejection of pollen. S1 is known to exhibit specific pollen-inhibitory properties [].
Probab=57.69 E-value=26 Score=28.66 Aligned_cols=70 Identities=16% Similarity=0.236 Sum_probs=45.9
Q ss_pred EEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcC
Q 012003 73 VVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNR 151 (473)
Q Consensus 73 ~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 151 (473)
.|+|+|.|.....|..|=-.- ..| .+ ...+.||+++..+|.. +-.|+--|.|+... ....-..-+.|-..
T Consensus 2 ~V~I~N~L~~~~~L~vhC~S~----d~D--lg-~~~l~~g~~~~~~F~~-~~~~~t~f~C~~~~-~~~~~~~~f~vy~~ 71 (110)
T PF05938_consen 2 HVVIINNLGPGKILTVHCKSK----DDD--LG-WHVLKPGQSYSFSFRD-NFFGTTLFWCHFRW-PGGKYHHSFDVYRS 71 (110)
T ss_pred EEEEEECCCCCCeEEEEeeCC----Ccc--CC-CEECCCCCEEEEEEec-CcCCceeEEEEEEE-CCccEEEEEEEEec
Confidence 589999997776677665521 112 11 1458999999999986 35677778899876 11113566666543
No 88
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=52.63 E-value=1.4e+02 Score=27.09 Aligned_cols=103 Identities=17% Similarity=0.090 Sum_probs=63.9
Q ss_pred EEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc-----eeEEEeecCceee-----eeee
Q 012003 196 ILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH-----NLLLVETEGSYTV-----QQNY 265 (473)
Q Consensus 196 ~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-----~~~via~DG~~~~-----p~~~ 265 (473)
+-+||... ..+++-+..|-++.+-++|.... .|.+-+-.- .--.++.||..+. +..-
T Consensus 75 fNfnGts~------------G~mtIyiPaGw~V~V~f~N~e~~-pHnl~iv~n~t~~P~~~~~s~dgkil~~vG~~~s~~ 141 (195)
T TIGR03094 75 FNFNGTSY------------GAMTIYLPAGWNVYVTFTNYESL-PHNLKLLPNSTQTPRGPIWAHTGKIINSTGATTSIY 141 (195)
T ss_pred ccccCccC------------CceEEEEeCCCEEEEEEEcCCCC-CccEEEecCCCCCCCccccccCceeEeecccccCcc
Confidence 66777764 23889999999999999998844 566555211 1123556775542 1111
Q ss_pred eEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCC
Q 012003 266 TNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 266 d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
..--|.+||+.+..++.- ++| .||+.+.-..-.+ ..-.+.|.++..
T Consensus 142 ~~NGi~~Gqs~sg~~~~~-~~G-~YwlvCgipGHAe-----sGMw~~lIVSs~ 187 (195)
T TIGR03094 142 YGNGISSGHSRSGWWNDT-SAG-KYWLVCGITGHAE-----SGMWAVVIVSSN 187 (195)
T ss_pred ccccccccceeEEEeccC-CCe-eEEEEcccCChhh-----cCcEEEEEEecC
Confidence 223456899988777766 578 9999775433222 233466666643
No 89
>PF11142 DUF2917: Protein of unknown function (DUF2917); InterPro: IPR021317 This bacterial family of proteins appears to be restricted to Proteobacteria.
Probab=50.03 E-value=61 Score=23.81 Aligned_cols=47 Identities=23% Similarity=0.450 Sum_probs=29.3
Q ss_pred EEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEE
Q 012003 220 INVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSF 278 (473)
Q Consensus 220 ~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv 278 (473)
+++.+|+..+||.-.. ..+.+.+-.++|.. +|. .+-+.|.+||++.+
T Consensus 2 ~~L~~g~~~~lr~~~~-----~~l~v~~G~vWlT~-~g~------~~D~~L~~G~~l~l 48 (63)
T PF11142_consen 2 FELAPGETLSLRAAAG-----QRLRVESGRVWLTR-EGD------PDDYWLQAGDSLRL 48 (63)
T ss_pred EEeCCCceEEeEcCCC-----cEEEEccccEEEEC-CCC------CCCEEECCCCEEEe
Confidence 5677888888885442 33566666666643 442 24566777777654
No 90
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=49.92 E-value=56 Score=31.22 Aligned_cols=61 Identities=13% Similarity=0.228 Sum_probs=46.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
...+.+..|++++|++-.... .|.|.+.+-..+ +..-||...+..+++++ +| .|..+.+-
T Consensus 136 ~n~l~lPv~~~V~f~ltS~DV--iHsF~IP~l~~k----------------~d~iPG~~~~~~~~~~~-~G-~Y~g~Cae 195 (247)
T COG1622 136 VNELVLPVGRPVRFKLTSADV--IHSFWIPQLGGK----------------IDAIPGMTTELWLTANK-PG-TYRGICAE 195 (247)
T ss_pred cceEEEeCCCeEEEEEEechh--ceeEEecCCCce----------------eeecCCceEEEEEecCC-Ce-EEEEEcHh
Confidence 377999999999999988653 577777765443 44557888889999985 68 89998765
Q ss_pred c
Q 012003 297 R 297 (473)
Q Consensus 297 ~ 297 (473)
.
T Consensus 196 ~ 196 (247)
T COG1622 196 Y 196 (247)
T ss_pred h
Confidence 4
No 91
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=48.98 E-value=9.9 Score=30.25 Aligned_cols=22 Identities=23% Similarity=0.456 Sum_probs=13.8
Q ss_pred CCCCCCCCcccCCCCceEEEEE
Q 012003 99 QDGVLGTNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 99 ~DGv~~tq~~I~PG~~~~Y~f~ 120 (473)
.+||-|.+.-|.||++|+|.=-
T Consensus 49 G~GVVG~~P~L~pGe~f~Y~S~ 70 (90)
T PF04379_consen 49 GEGVVGQQPVLAPGESFEYTSG 70 (90)
T ss_dssp EESBTTB--EE-TTEEEEEEEE
T ss_pred CCceEccCceECCCCcEEEcCC
Confidence 4666666677999998888543
No 92
>PF05506 DUF756: Domain of unknown function (DUF756); InterPro: IPR008475 This domain is found, normally as a tandem repeat, at the C terminus of bacterial phospholipase C proteins.; GO: 0004629 phospholipase C activity, 0016042 lipid catabolic process
Probab=43.99 E-value=1.5e+02 Score=23.05 Aligned_cols=58 Identities=16% Similarity=0.237 Sum_probs=34.9
Q ss_pred cEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 226 KTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 226 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
..++|.|.|.|.. ...|.+..... . .....++.|.+|++.++.+.+....| -|-+...
T Consensus 20 g~l~l~l~N~g~~-~~~~~v~~~~y----~------~~~~~~~~v~ag~~~~~~w~l~~s~g-wYDl~v~ 77 (89)
T PF05506_consen 20 GNLRLTLSNPGSA-AVTFTVYDNAY----G------GGGPWTYTVAAGQTVSLTWPLAASGG-WYDLTVT 77 (89)
T ss_pred CEEEEEEEeCCCC-cEEEEEEeCCc----C------CCCCEEEEECCCCEEEEEEeecCCCC-cEEEEEE
Confidence 4789999998765 55555543211 0 01125677777777777777754445 5666554
No 93
>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO). F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.
Probab=41.74 E-value=82 Score=25.01 Aligned_cols=49 Identities=16% Similarity=0.362 Sum_probs=28.5
Q ss_pred EEEEEEeEeCCCceeEEEEeCceeEEEeecCceee--e--eeeeEEEEcCCceEEE
Q 012003 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV--Q--QNYTNMDIHVGQSFSF 278 (473)
Q Consensus 227 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~--p--~~~d~v~l~pGeR~dv 278 (473)
.|++||-|.+.. .+.|-...+.|...||...+ - ..-+.=.|.|||.+..
T Consensus 15 ~Y~I~I~N~~~~---~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y 67 (90)
T PF04379_consen 15 AYRIRIENHSDE---SVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEY 67 (90)
T ss_dssp EEEEEEEE-SSS----EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEE
T ss_pred EEEEEEEECCCC---CEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEE
Confidence 378999998865 46666777777777775431 1 1224556788886644
No 94
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=41.73 E-value=2.8e+02 Score=25.43 Aligned_cols=76 Identities=16% Similarity=-0.068 Sum_probs=49.8
Q ss_pred eEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-hhhhcCC
Q 012003 63 ILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRAAG 141 (473)
Q Consensus 63 ~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~G 141 (473)
.+.+..|..++++++-. +.-++....++.. .+| .-||..-...|++ +++|+|.--|.- -+..-..
T Consensus 117 ~l~lp~g~~v~~~ltS~-DViHsf~vp~l~~----k~d--------~~PG~~~~~~~~~-~~~G~y~g~C~e~CG~~H~~ 182 (194)
T MTH00047 117 PLRLVYGVPYHLLVTSS-DVIHSFSVPDLNL----KMD--------AIPGRINHLFFCP-DRHGVFVGYCSELCGVGHSY 182 (194)
T ss_pred eEEEeCCCEEEeeeecC-ccccceeccccCc----eee--------cCCCceEEEEEEc-CCCEEEEEEeehhhCcCccc
Confidence 58888899988888765 3444444443321 133 4588888888887 689999999873 1222235
Q ss_pred eeeEEEEEcCC
Q 012003 142 GYGGIIINNRD 152 (473)
Q Consensus 142 l~G~liV~~~~ 152 (473)
|.+.+.|.+++
T Consensus 183 M~~~v~v~~~~ 193 (194)
T MTH00047 183 MPIVIEVVDVD 193 (194)
T ss_pred CcEEEEEEcCC
Confidence 77888887654
No 95
>KOG4063 consensus Major epididymal secretory protein HE1 [Function unknown]
Probab=40.29 E-value=2.1e+02 Score=25.05 Aligned_cols=75 Identities=15% Similarity=0.159 Sum_probs=40.9
Q ss_pred CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCc---eeeeCCCCCC------CCCCCCCCC-C-----CCcccC
Q 012003 46 LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPL---LLTWNGVQHR------KNSWQDGVL-G-----TNCPIP 110 (473)
Q Consensus 46 dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~---siH~HG~~~~------~~~~~DGv~-~-----tq~~I~ 110 (473)
+|...++-.=|-.. +.=.++.|.+..|.+.=...+.+ .--.||+..- .-++.||-. + .-||+.
T Consensus 34 ~g~~~~V~i~~C~t--~pC~lkKgt~~si~I~F~~~~~~~~lkt~v~g~~lg~v~vPfpl~~~dacv~~~l~~gv~CPl~ 111 (158)
T KOG4063|consen 34 DGTPLEVKIDGCPT--TPCQLKKGTEASIQIDFAPSRDTTKLKTVVHGITLGSVPVPFPLPASDACVCGNLLHGVYCPLS 111 (158)
T ss_pred CCcceEEEecCCCC--CceEEecCCeEEEEEEEeeccchhhhhheeeeeecccEeecCCCCCCcccccccccccccCccc
Confidence 56555554444322 24456778777776654433221 1222333211 112344433 1 359999
Q ss_pred CCCceEEEEEEC
Q 012003 111 AGWNWTYQFQVK 122 (473)
Q Consensus 111 PG~~~~Y~f~~~ 122 (473)
+||.++|.+..|
T Consensus 112 age~ytY~~slp 123 (158)
T KOG4063|consen 112 AGEDYTYLNSLP 123 (158)
T ss_pred CCCceEEEEEee
Confidence 999999999886
No 96
>PF11614 FixG_C: IG-like fold at C-terminal of FixG, putative oxidoreductase; PDB: 2R39_A.
Probab=40.14 E-value=1.3e+02 Score=24.76 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=27.1
Q ss_pred EEEEEEeEeCCC-ceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEe
Q 012003 227 TYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282 (473)
Q Consensus 227 ~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~ 282 (473)
.|+++|+|.+.. ..+.+.++|.. |.-+. ...+.+.|.||+..++-|..
T Consensus 34 ~Y~lkl~Nkt~~~~~~~i~~~g~~-------~~~l~-~~~~~i~v~~g~~~~~~v~v 82 (118)
T PF11614_consen 34 QYTLKLTNKTNQPRTYTISVEGLP-------GAELQ-GPENTITVPPGETREVPVFV 82 (118)
T ss_dssp EEEEEEEE-SSS-EEEEEEEES-S-------S-EE--ES--EEEE-TT-EEEEEEEE
T ss_pred EEEEEEEECCCCCEEEEEEEecCC-------CeEEE-CCCcceEECCCCEEEEEEEE
Confidence 579999999875 35667777642 22221 12467889999988776654
No 97
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=40.01 E-value=21 Score=28.89 Aligned_cols=30 Identities=20% Similarity=0.178 Sum_probs=26.1
Q ss_pred EEEcCCCCCceEEEecCCEEEEEEEECCCC
Q 012003 53 IGINGQFPGPILNVTTNWNVVVNVKNDLDE 82 (473)
Q Consensus 53 ~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~ 82 (473)
..+||+.-=|.=.|+.||.|+|++.|..-.
T Consensus 36 V~vNG~~aKpS~~VK~GD~l~i~~~~~~~~ 65 (100)
T COG1188 36 VKVNGQRAKPSKEVKVGDILTIRFGNKEFT 65 (100)
T ss_pred EEECCEEcccccccCCCCEEEEEeCCcEEE
Confidence 478999888999999999999999998543
No 98
>PF07691 PA14: PA14 domain; InterPro: IPR011658 The PA14 domain forms an insert in bacterial beta-glucosidases, other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins and bacterial toxins, including anthrax protective antigen (PA). The domain also occurs in a Dictyostelium pre-spore cell-inducing factor Psi and in fibrocystin, the mammalian protein whose mutation leads to polycystic kidney and hepatic disease. The crystal structure of PA shows that this domain (named PA14 after its location in the PA20 pro-peptide) has a beta-barrel structure. The PA14 domain sequence suggests a binding function, rather than a catalytic role. The PA14 domain distribution is compatible with carbohydrate binding [].; PDB: 2XVG_A 2XVK_A 2XVL_A 2XJU_A 2XJT_A 2XJQ_A 2XJS_A 2XJV_A 2XJP_A 2XJR_A ....
Probab=39.38 E-value=1.5e+02 Score=24.91 Aligned_cols=65 Identities=8% Similarity=0.149 Sum_probs=42.7
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee-------eeeeeeEEEEcCCceEEEEEEeCCCCC
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-------VQQNYTNMDIHVGQSFSFLVTTDQNAS 287 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-------~p~~~d~v~l~pGeR~dv~v~~~~~~g 287 (473)
-.|++..-..|+|++-..+ ..++.|+|..+ |+.++..- ......++.+..|++|+|-|...+..+
T Consensus 52 G~~~~~~~G~y~f~~~~~d---~~~l~idg~~v--id~~~~~~~~~~~~~~~~~~~~v~l~~g~~y~i~i~y~~~~~ 123 (145)
T PF07691_consen 52 GYFKPPETGTYTFSLTSDD---GARLWIDGKLV--IDNWGNQGGGFFNSGPSSTSGTVTLEAGGKYPIRIEYFNRGG 123 (145)
T ss_dssp EEEEESSSEEEEEEEEESS---EEEEEETTEEE--EECSCTTTSTTTTTSBCCEEEEEEE-TT-EEEEEEEEEECSC
T ss_pred EEEecccCceEEEEEEecc---cEEEEECCEEE--EcCCccccccccccccceEEEEEEeeCCeeEEEEEEEEECCC
Confidence 3466777778999998433 57788888764 55555332 245567788989999999887654333
No 99
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=37.95 E-value=1.2e+02 Score=25.83 Aligned_cols=62 Identities=18% Similarity=0.232 Sum_probs=38.3
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|+++| ++|.... .|.+...+-. .+...+.+.-.+++.+.+-++. +| .|...+.+
T Consensus 53 PA~v~v~pGDTVt--w~~~d~~-~Hnv~~~~~~-----------~~~g~~~~~~~~~~s~~~Tfe~---~G-~Y~Y~C~P 114 (128)
T COG3794 53 PAEVTVKPGDTVT--WVNTDSV-GHNVTAVGGM-----------DPEGSGTLKAGINESFTHTFET---PG-EYTYYCTP 114 (128)
T ss_pred CcEEEECCCCEEE--EEECCCC-CceEEEeCCC-----------CcccccccccCCCcceEEEecc---cc-eEEEEecc
Confidence 4779999999875 5777653 4444433222 2222345555667888776654 57 88886654
No 100
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=37.64 E-value=93 Score=25.98 Aligned_cols=19 Identities=21% Similarity=0.272 Sum_probs=16.2
Q ss_pred ceEEEEeCCcEEEEEEeEe
Q 012003 217 YQLINVEPGKTYRLRVHNV 235 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~ 235 (473)
+..++|++|++++|...+.
T Consensus 14 P~~v~V~~GdTV~f~n~d~ 32 (116)
T TIGR02375 14 PAYIRAAPGDTVTFVPTDK 32 (116)
T ss_pred CCEEEECCCCEEEEEECCC
Confidence 4779999999999887774
No 101
>PRK09918 putative fimbrial chaperone protein; Provisional
Probab=36.47 E-value=1.8e+02 Score=27.46 Aligned_cols=18 Identities=17% Similarity=0.111 Sum_probs=12.5
Q ss_pred CceEEEecCCEEEEEEEE
Q 012003 61 GPILNVTTNWNVVVNVKN 78 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N 78 (473)
.|.+++++|+.-.||+.-
T Consensus 75 PPl~rl~pg~~q~vRii~ 92 (230)
T PRK09918 75 PPVARVEPGQSQQVRFIL 92 (230)
T ss_pred CCeEEECCCCceEEEEEE
Confidence 367777777777777653
No 102
>smart00758 PA14 domain in bacterial beta-glucosidases other glycosidases, glycosyltransferases, proteases, amidases, yeast adhesins, and bacterial toxins.
Probab=34.86 E-value=2.6e+02 Score=23.34 Aligned_cols=61 Identities=7% Similarity=0.168 Sum_probs=35.6
Q ss_pred EEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee-eeeeeeEEEEcCCceEEEEEEeCC
Q 012003 219 LINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-VQQNYTNMDIHVGQSFSFLVTTDQ 284 (473)
Q Consensus 219 ~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~ 284 (473)
.+++.....|+|.+...+ ..++.|+|.. ||+.++..- .......+.|..|++|.|.|...+
T Consensus 51 ~i~~~~~G~y~f~~~~~~---~~~l~Idg~~--vid~~~~~~~~~~~~~~v~l~~g~~~~i~v~y~~ 112 (136)
T smart00758 51 YLKPPEDGEYTFSITSDD---GARLWIDGKL--VIDNWGKHEARPSTSSTLYLLAGGTYPIRIEYFE 112 (136)
T ss_pred EEECCCCccEEEEEEcCC---cEEEEECCcE--EEcCCccCCCccccceeEEEeCCcEEEEEEEEEe
Confidence 355555667899885433 4677888753 444333221 122334577777777777776543
No 103
>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed
Probab=34.37 E-value=1.1e+02 Score=26.07 Aligned_cols=49 Identities=16% Similarity=0.348 Sum_probs=31.6
Q ss_pred EEEEEEeEeCCCceeEEEEeCceeEEEeecCceee----eeeeeEEEEcCCceEEE
Q 012003 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV----QQNYTNMDIHVGQSFSF 278 (473)
Q Consensus 227 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~----p~~~d~v~l~pGeR~dv 278 (473)
.|++||-|.+.. .+.|-...+.|...||...+ ...-..=.|.|||.+..
T Consensus 32 ~Y~ItI~N~~~~---~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~PGe~F~Y 84 (127)
T PRK05461 32 AYTITIENLGRV---PVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEY 84 (127)
T ss_pred EEEEEEEECCCC---CEEEEeeeEEEEECCCCEEEEECCceecCCceECCCCCeEE
Confidence 368999997743 46777788888888876432 12223446777776544
No 104
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=33.85 E-value=3.9e+02 Score=24.82 Aligned_cols=75 Identities=13% Similarity=0.065 Sum_probs=48.0
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~~ 139 (473)
..|.+..|..|++.++-+ +.-+|...-.+ - -+.-.-||..-...|++ +++|+|+-.|-- |.+-+
T Consensus 130 n~l~iP~g~~v~~~ltS~-DViHsf~vP~l--------~----~k~daiPG~~~~~~~~~-~~~G~y~g~Cae~CG~~Hs 195 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSA-DTMTSFWIPQL--------G----GQKYAMTGMTMNWYLQA-DQVGTYRGRNANFNGEGFA 195 (217)
T ss_pred CcEEEECCCEEEEEEECC-chhhhhhchhh--------C----ceeecCCCceEEEEEEe-CCCEEEEEEehhhcCcccc
Confidence 578999999999999876 22222222111 1 12334588888889998 689999988862 32222
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
-|...+.|.++
T Consensus 196 -~M~~~v~v~~~ 206 (217)
T TIGR01432 196 -DQTFDVNAVSE 206 (217)
T ss_pred -CCeEEEEEeCH
Confidence 36677777654
No 105
>cd00916 Npc2_like Niemann-Pick type C2 (Npc2) is a lysosomal protein in which a mutation in the gene causes a rare form of Niemann-Pick type C disease, an autosomal recessive lipid storage disorder characterized by accumulation of low-density lipoprotein-derived cholesterol in lysosomes. Although Npc2 is known to bind cholesterol, the function of this protein is unknown. These proteins belong to the ML domain family.
Probab=33.61 E-value=1.6e+02 Score=24.60 Aligned_cols=18 Identities=39% Similarity=0.809 Sum_probs=15.9
Q ss_pred CCcccCCCCceEEEEEEC
Q 012003 105 TNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 105 tq~~I~PG~~~~Y~f~~~ 122 (473)
..|||.+|+.++|.+..+
T Consensus 75 ~~CPl~~G~~~~y~~~~~ 92 (123)
T cd00916 75 TSCPLSAGEDVTYTLSLP 92 (123)
T ss_pred CCCCCcCCcEEEEEEeee
Confidence 569999999999999774
No 106
>PF10989 DUF2808: Protein of unknown function (DUF2808); InterPro: IPR021256 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=33.52 E-value=45 Score=28.98 Aligned_cols=29 Identities=17% Similarity=0.289 Sum_probs=22.6
Q ss_pred CcccCCCCceEEEEEE---CCCccceeeccCh
Q 012003 106 NCPIPAGWNWTYQFQV---KDQIGSFFYFPSL 134 (473)
Q Consensus 106 q~~I~PG~~~~Y~f~~---~~~~Gt~wYH~H~ 134 (473)
..||+||++++-.+.. |...|+|.|++-.
T Consensus 96 ~~PV~pG~tv~V~l~~v~NP~~~G~Y~f~v~a 127 (146)
T PF10989_consen 96 DEPVPPGTTVTVVLSPVRNPRSGGTYQFNVTA 127 (146)
T ss_pred CCCCCCCCEEEEEEEeeeCCCCCCeEEEEEEE
Confidence 4789999999998833 3446999888763
No 107
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=31.41 E-value=1.8e+02 Score=26.67 Aligned_cols=59 Identities=20% Similarity=0.272 Sum_probs=42.2
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.++.|+.+||++-.... .|.|.+.+...+ +..-||..-.+.+++++ +| .|..+.+-
T Consensus 116 ~~l~lp~g~~v~~~ltS~DV--iHsf~vp~l~~k----------------~d~~PG~~~~~~~~~~~-~G-~y~g~C~e 174 (194)
T MTH00047 116 KPLRLVYGVPYHLLVTSSDV--IHSFSVPDLNLK----------------MDAIPGRINHLFFCPDR-HG-VFVGYCSE 174 (194)
T ss_pred ceEEEeCCCEEEeeeecCcc--ccceeccccCce----------------eecCCCceEEEEEEcCC-CE-EEEEEeeh
Confidence 44889999999999987654 467777655433 23347888888888874 67 88887754
No 108
>cd00918 Der-p2_like Several group 2 allergen proteins belong to the ML domain family. They include Dermatophagoides pteronyssinus, group 2 (Der p 2) and D. farinae, group 2 (Der f 2) allergens. These house dust mites cause heavy atopic diseases such as asthma and dermatitis. Although the allergenic properties of these proteins have been well characterized, their biological function in mites is unknown.
Probab=29.69 E-value=2e+02 Score=24.07 Aligned_cols=61 Identities=13% Similarity=0.227 Sum_probs=33.0
Q ss_pred ceEEEecCCEEEEEEEECCCCC---ceeeeC----CCCCC-CCCCCCCCCCCCcccCCCCceEEEEEEC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEP---LLLTWN----GVQHR-KNSWQDGVLGTNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~---~siH~H----G~~~~-~~~~~DGv~~tq~~I~PG~~~~Y~f~~~ 122 (473)
..=.++.|..+.+.+.=..... .....| |+... ..+..||=-...|||..|+.++|.+..+
T Consensus 20 ~pC~l~rG~~~~~~~~F~~~~~s~~l~~~v~a~~~gv~iP~p~~~~daC~~l~CPl~~G~~~~y~~~~~ 88 (120)
T cd00918 20 DYCVIHRGKPLTLEAKFTANQDTAKAKIKITASIDGLEIDVPGIETDGCKYVKCPIKKGQHYDIKYTWN 88 (120)
T ss_pred CCCEEECCCeEEEEEEEECCCccceEEEEEEEEECCEEcCCCCCCCCCcccEeCCCcCCcEEEEEEeee
Confidence 3445667777776665222221 222223 43221 1112344211469999999999998775
No 109
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=29.06 E-value=1.3e+02 Score=28.36 Aligned_cols=59 Identities=8% Similarity=0.108 Sum_probs=40.6
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.+..|+.+||++-..... |+|.+..-..+ ...-||..-.+-+++++ +| .|..+.+-
T Consensus 139 nel~lP~g~pV~~~ltS~DVi--HSF~VP~l~~K----------------~DaiPG~~n~~~~~~~~-~G-~y~g~CaE 197 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSNSVM--NSFFIPQLGSQ----------------IYAMAGMQTKLHLIANE-PG-VYDGISAN 197 (226)
T ss_pred ceEEEECCCEEEEEEEECchh--hhhhhhhcCCe----------------eecCCCceEEEEEEeCC-CE-EEEEEchh
Confidence 568899999999999886644 55555533322 23347877788888885 67 88887644
No 110
>COG3354 FlaG Putative archaeal flagellar protein G [Cell motility and secretion]
Probab=28.66 E-value=3.9e+02 Score=23.21 Aligned_cols=63 Identities=17% Similarity=0.250 Sum_probs=42.5
Q ss_pred cEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeee-------eeEEEEcCCceE-EEEEEeCCCCCcceEEEE
Q 012003 226 KTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN-------YTNMDIHVGQSF-SFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 226 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~-------~d~v~l~pGeR~-dv~v~~~~~~g~~y~i~~ 294 (473)
.+|-|.+-|.|.. .+.++.-.++|+ +||..+.+.. .+++.|.|||-. ++.+.-. ..| .-.|..
T Consensus 70 ~t~t~yiKNtG~~---~~~fd~~sitVl-iDG~iv~~a~~~~~~~~gs~i~l~PG~Vg~ev~vn~~-lSG-yhri~V 140 (154)
T COG3354 70 YTYTFYIKNTGSD---SIAFDNTSITVL-IDGNIVTPAYVTFTSVNGSSIRLSPGQVGREVTVNEA-LSG-YHRIVV 140 (154)
T ss_pred eEEEEEEecCCCc---ccccCCCeEEEE-EcCcEeccceEEEEecCCCeeEecCCceeeEEEeccC-CCc-ceEEEE
Confidence 4789999999965 345677777776 7998775532 357779999987 6666544 235 444544
No 111
>PRK15188 fimbrial chaperone protein BcfB; Provisional
Probab=27.69 E-value=3.7e+02 Score=25.33 Aligned_cols=18 Identities=6% Similarity=0.248 Sum_probs=13.0
Q ss_pred CceEEEecCCEEEEEEEE
Q 012003 61 GPILNVTTNWNVVVNVKN 78 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N 78 (473)
.|.+|++.|++-.+|+.-
T Consensus 79 PPlfrl~~~~~~~lRI~~ 96 (228)
T PRK15188 79 PPLFVIQPKKENILRIMY 96 (228)
T ss_pred CCeEEECCCCceEEEEEE
Confidence 367788888777777663
No 112
>PF14451 Ub-Mut7C: Mut7-C ubiquitin
Probab=27.30 E-value=52 Score=25.58 Aligned_cols=27 Identities=19% Similarity=0.067 Sum_probs=24.0
Q ss_pred eEEEEEEcCCCCCceEEEecCCEEEEE
Q 012003 49 KQQVIGINGQFPGPILNVTTNWNVVVN 75 (473)
Q Consensus 49 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~ 75 (473)
+..++.+||+.-++.-+++.||+|.|.
T Consensus 48 EV~~i~vNG~~v~~~~~~~~Gd~v~V~ 74 (81)
T PF14451_consen 48 EVGLILVNGRPVDFDYRLKDGDRVAVY 74 (81)
T ss_pred HeEEEEECCEECCCcccCCCCCEEEEE
Confidence 457899999999999999999999874
No 113
>PF14478 DUF4430: Domain of unknown function (DUF4430); PDB: 3U7Z_B 2BB5_A.
Probab=24.59 E-value=61 Score=24.00 Aligned_cols=27 Identities=7% Similarity=0.005 Sum_probs=17.8
Q ss_pred eEEEEEEcCCCC---CceEEEecCCEEEEE
Q 012003 49 KQQVIGINGQFP---GPILNVTTNWNVVVN 75 (473)
Q Consensus 49 ~~~~~~~Ng~~p---gP~i~v~~Gd~v~v~ 75 (473)
...++.+||++| .-.+.++.||+|+.+
T Consensus 39 ~~W~~~vNG~~~~~ga~~~~l~~GD~i~~~ 68 (68)
T PF14478_consen 39 SYWMYYVNGESANVGAGSYKLKDGDKITWY 68 (68)
T ss_dssp EEEEEEETTEE-SS-CCC-B--TTEEEEE-
T ss_pred ceeEEEECCEEhhcCcceeEeCCCCEEEeC
Confidence 467889999876 357899999998763
No 114
>PF05753 TRAP_beta: Translocon-associated protein beta (TRAPB); InterPro: IPR008856 This family consists of several eukaryotic translocon-associated protein beta (TRAPB) or signal sequence receptor beta subunit (SSR-beta) proteins. The normal translocation of nascent polypeptides into the lumen of the endoplasmic reticulum (ER) is thought to be aided in part by a translocon-associated protein (TRAP) complex consisting of 4 protein subunits. The association of mature proteins with the ER and Golgi, or other intracellular locales, such as lysosomes, depends on the initial targeting of the nascent polypeptide to the ER membrane. A similar scenario must also exist for proteins destined for secretion [].; GO: 0005783 endoplasmic reticulum, 0016021 integral to membrane
Probab=24.24 E-value=4.3e+02 Score=23.89 Aligned_cols=22 Identities=32% Similarity=0.495 Sum_probs=16.9
Q ss_pred cccCCCCceEEEEEEC-CCccce
Q 012003 107 CPIPAGWNWTYQFQVK-DQIGSF 128 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~-~~~Gt~ 128 (473)
.-|+||++.++.|.+. ...|.|
T Consensus 81 ~~i~pg~~vsh~~vv~p~~~G~f 103 (181)
T PF05753_consen 81 ERIPPGENVSHSYVVRPKKSGYF 103 (181)
T ss_pred EEECCCCeEEEEEEEeeeeeEEE
Confidence 4589999999998884 347776
No 115
>PRK15218 fimbrial chaperone protein PegB; Provisional
Probab=24.14 E-value=4e+02 Score=25.04 Aligned_cols=19 Identities=21% Similarity=0.359 Sum_probs=16.0
Q ss_pred CceEEEecCCEEEEEEEEC
Q 012003 61 GPILNVTTNWNVVVNVKND 79 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~ 79 (473)
.|..|+++|+.-.+|+...
T Consensus 74 PPlfRl~p~~~~~lRI~~~ 92 (226)
T PRK15218 74 PPVIRVAANSGQQLKIKKL 92 (226)
T ss_pred CCeEEECCCCceEEEEEEC
Confidence 4889999999988888864
No 116
>PRK10183 hypothetical protein; Provisional
Probab=23.73 E-value=94 Score=22.27 Aligned_cols=19 Identities=32% Similarity=0.510 Sum_probs=15.5
Q ss_pred eEEEEeCCcEEEEEEeEeC
Q 012003 218 QLINVEPGKTYRLRVHNVG 236 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~ 236 (473)
...-...|+.||||+--+|
T Consensus 32 ~v~I~H~G~~Y~LR~Tr~G 50 (56)
T PRK10183 32 KVIIDHDGQEYLLRKTQAG 50 (56)
T ss_pred EEEEEECCcEEEeEEccCC
Confidence 5666778999999997765
No 117
>COG4633 Plastocyanin domain containing protein [General function prediction only]
Probab=23.68 E-value=4.8e+02 Score=24.56 Aligned_cols=89 Identities=15% Similarity=0.192 Sum_probs=60.4
Q ss_pred cCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCC-----ceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEE
Q 012003 44 SPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEP-----LLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQ 118 (473)
Q Consensus 44 ~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~-----~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~ 118 (473)
+++|.+---+++.|.+---.|.|..|-.+++++.=+.+.+ .+-.+|+. ...+-++-..-+
T Consensus 79 a~~g~qeIsitv~gGy~p~~IvV~~~v~~rl~f~Rkdpspcle~i~~pdfgia---------------anlpl~q~ssIe 143 (272)
T COG4633 79 APNGIQEISITVDGGYIPSRIVVVDGVPVRLTFKRKDPSPCLESIMSPDFGIA---------------ANLPLNQVSSIE 143 (272)
T ss_pred ccCCceEEEEEEeCCccceeEEEecCcceEeeeccCCCCcchhhccccccccc---------------ccCCcCceeEEE
Confidence 3445444445555555445899999999999998875432 33444444 234567888888
Q ss_pred EEECCCccceeeccChhhhhcCCeeeEEEEEcCCC
Q 012003 119 FQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 119 f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 153 (473)
|+. .++|.|-+-|... =|.|.++|++-..
T Consensus 144 ~T~-~s~ge~af~cgmn-----m~~G~~~vet~~~ 172 (272)
T COG4633 144 FTP-ISKGEYAFLCGMN-----MFRGNIQVETLTG 172 (272)
T ss_pred ecc-ccccchhhhcchh-----hccCeeEEEecCC
Confidence 986 6899998888754 2678999998654
No 118
>TIGR02988 YaaA_near_RecF S4 domain protein YaaA. This small protein has a single S4 domain (pfam01479), as do bacterial ribosomal protein S4, some pseudouridine synthases, tyrosyl-tRNA synthetases. The S4 domain may bind RNA. Members of this protein family are found almost exclusively in the Firmicutes, and almost invariably just a few nucleotides upstream of the gene for the DNA replication and repair protein RecF. The few members of this family that are not near recF are found instead near dnaA and/or dnaN, the usual neighbors of recF, near the origin of replication. The conserved location suggests a possible role in replication in the Firmicutes lineage.
Probab=23.66 E-value=45 Score=23.87 Aligned_cols=22 Identities=9% Similarity=0.078 Sum_probs=18.2
Q ss_pred EEEcCCCC-CceEEEecCCEEEE
Q 012003 53 IGINGQFP-GPILNVTTNWNVVV 74 (473)
Q Consensus 53 ~~~Ng~~p-gP~i~v~~Gd~v~v 74 (473)
+.+||+.- -|..+++.||.|.|
T Consensus 36 V~VNg~~~~~~~~~l~~Gd~v~i 58 (59)
T TIGR02988 36 VLVNGELENRRGKKLYPGDVIEI 58 (59)
T ss_pred EEECCEEccCCCCCCCCCCEEEe
Confidence 46799865 68899999999986
No 119
>PRK13202 ureB urease subunit beta; Reviewed
Probab=23.56 E-value=2.6e+02 Score=22.82 Aligned_cols=64 Identities=13% Similarity=0.059 Sum_probs=37.9
Q ss_pred eEEEEeCC--cEEEEEEeEeCCCceeEEEEeCceeEEE--------eecCceeeeeeeeEEEEcCCceEEEEEEe
Q 012003 218 QLINVEPG--KTYRLRVHNVGISTSLNFRIQNHNLLLV--------ETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282 (473)
Q Consensus 218 ~~~~v~~G--~~~rlRliN~~~~~~~~~~i~gh~~~vi--------a~DG~~~~p~~~d~v~l~pGeR~dv~v~~ 282 (473)
..+.+.+| ++.+|++.|.|. +.+++--|=|-+++= ++-|..+.=..-.++..-|||.-+|-+..
T Consensus 11 ~~I~ln~grr~~~~l~V~NtGD-RPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~ 84 (104)
T PRK13202 11 GDIEMNAAALSRLQMRIINAGD-RPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP 84 (104)
T ss_pred CCEEeCCCCCceEEEEEEeCCC-CceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE
Confidence 44788888 478999999985 466665555554431 11122221112346677777777776643
No 120
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=23.15 E-value=1.2e+02 Score=23.25 Aligned_cols=28 Identities=7% Similarity=-0.008 Sum_probs=21.9
Q ss_pred EEEeecCCcEEEEEEecCCCCCCceeecCC
Q 012003 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGY 462 (473)
Q Consensus 433 ~~~~~~~g~~Veivl~N~~~~~HP~HLHGh 462 (473)
..+.++.|++|.| .|.+...|=.+.+.-
T Consensus 11 ~~i~v~~GdtVt~--~N~d~~~Hnv~~~~g 38 (83)
T TIGR02657 11 PELHVKVGDTVTW--INREAMPHNVHFVAG 38 (83)
T ss_pred CEEEECCCCEEEE--EECCCCCccEEecCC
Confidence 4578899999987 477778898887654
No 121
>PF04744 Monooxygenase_B: Monooxygenase subunit B protein; InterPro: IPR006833 Ammonia monooxygenase and the particulate methane monooxygenase are both integral membrane proteins, occurring in ammonia oxidisers and methanotrophs respectively, which are thought to be evolutionarily related []. These enzymes have a relatively wide substrate specificity and can catalyse the oxidation of a range of substrates including ammonia, methane, halogenated hydrocarbons and aromatic molecules []. These enzymes are composed of 3 subunits - A (IPR003393 from INTERPRO), B (IPR006833 from INTERPRO) and C (IPR006980 from INTERPRO) - and contain various metal centres, including copper. Particulate methane monooxygenase from Methylococcus capsulatus str. Bath is an ABC homotrimer, which contains mononuclear and dinuclear copper metal centres, and a third metal centre containing a metal ion whose identity in vivo is not certain[]. The soluble regions of these enzymes derive primarily from the B subunit. This subunit forms two antiparallel beta-barrel-like structures and contains the mono- and di- nuclear copper metal centres [].; PDB: 3CHX_E 3RFR_A 3RGB_A 1YEW_A.
Probab=22.99 E-value=44 Score=33.57 Aligned_cols=53 Identities=19% Similarity=0.415 Sum_probs=26.3
Q ss_pred CCCCCCC-CCcccCCCCceEEEEEEC-CCccceeeccChhhhhcCCeeeE---EEEEc
Q 012003 98 WQDGVLG-TNCPIPAGWNWTYQFQVK-DQIGSFFYFPSLDFQRAAGGYGG---IIINN 150 (473)
Q Consensus 98 ~~DGv~~-tq~~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~---liV~~ 150 (473)
|+.|.|. ...+|..|+.|.|+..+. -.+|+|--|.-.+.+-...+.|+ +.|++
T Consensus 71 ~ing~~~p~S~~le~G~~y~fki~lkar~pG~~hvh~~~nv~~~Gp~~Gpg~~v~i~g 128 (381)
T PF04744_consen 71 WINGQPVPRSVSLELGGTYEFKIVLKARRPGTWHVHPMLNVEDAGPIVGPGQWVTIEG 128 (381)
T ss_dssp EETTEE-SS-B---TT-EEEEEEEEEE-S-EEEEEEEEEEETTTEEEEEEEEEEEEES
T ss_pred eecCccccceEEeecCCeeeEEEEEecccCccccceeeEeeccCCCCcCCceEEEEec
Confidence 4555554 456799999988887664 25999733333334444445555 55554
No 122
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=22.86 E-value=1.7e+02 Score=27.22 Aligned_cols=59 Identities=12% Similarity=0.196 Sum_probs=40.5
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.+..|+.+||++-.... .|+|.+..-..+ ...-||..-.+-+++++ +| .|+.+.+-
T Consensus 130 n~l~iP~g~~v~~~ltS~DV--iHsf~vP~l~~k----------------~daiPG~~~~~~~~~~~-~G-~y~g~Cae 188 (217)
T TIGR01432 130 NYLNIPKDRPVLFKLQSADT--MTSFWIPQLGGQ----------------KYAMTGMTMNWYLQADQ-VG-TYRGRNAN 188 (217)
T ss_pred CcEEEECCCEEEEEEECCch--hhhhhchhhCce----------------eecCCCceEEEEEEeCC-CE-EEEEEehh
Confidence 45788899999999887664 355555543322 23337888888888884 67 89887653
No 123
>PF15415 DUF4622: Protein of unknown function (DUF4622)
Probab=22.81 E-value=5.6e+02 Score=24.32 Aligned_cols=65 Identities=15% Similarity=0.205 Sum_probs=40.9
Q ss_pred eEEEEeCCcEEEEEEeEeCCCce-eEEEEeCceeEEEeecCceeeee------------eeeEEEEcC----CceEEEEE
Q 012003 218 QLINVEPGKTYRLRVHNVGISTS-LNFRIQNHNLLLVETEGSYTVQQ------------NYTNMDIHV----GQSFSFLV 280 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~-~~~~i~gh~~~via~DG~~~~p~------------~~d~v~l~p----GeR~dv~v 280 (473)
..+-+++| +|.||+|..+-... --+..-+.-+.++|.|+.+.+.. .++.+.|.| -.|+.|.+
T Consensus 94 tPLyl~aG-tY~F~~iSPAka~~~dgk~~I~NGeYl~aTd~rytqT~st~~~I~~i~~~nvq~i~LnPii~qtaRm~Fti 172 (310)
T PF15415_consen 94 TPLYLNAG-TYYFRMISPAKASNSDGKMNIDNGEYLYATDNRYTQTYSTPCPISKINENNVQYIYLNPIINQTARMQFTI 172 (310)
T ss_pred CceEEecc-eEEEEEeccccccccCceEEeCCceEEEEcCCceeEEeeeeeeeEeeccCCeeEEEeChhhhheeEEEEEE
Confidence 44678886 79999999764322 12333345689999999987521 134455554 45666666
Q ss_pred EeC
Q 012003 281 TTD 283 (473)
Q Consensus 281 ~~~ 283 (473)
+..
T Consensus 173 ~~g 175 (310)
T PF15415_consen 173 HKG 175 (310)
T ss_pred ecC
Confidence 654
No 124
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=22.48 E-value=3e+02 Score=25.87 Aligned_cols=75 Identities=13% Similarity=-0.090 Sum_probs=45.9
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~~ 139 (473)
-.+.+..|..|++.+++. +.-++....++.. .+| .-||..-...|.+ +++|+|+--|.- |. .-
T Consensus 140 n~lvlP~~~~v~~~~tS~-DViHsf~vP~~~~----k~d--------aiPG~~~~~~~~~-~~~G~~~g~Cse~CG~-~H 204 (228)
T MTH00008 140 NRAVLPMQTEIRVLVTAA-DVIHSWTVPSLGV----KVD--------AVPGRLNQIGFTI-TRPGVFYGQCSEICGA-NH 204 (228)
T ss_pred ceEEEecCCEEEEEEEeC-CccccccccccCc----cee--------cCCCceEEEEEEe-CCCEEEEEEChhhcCc-Cc
Confidence 467788888889988885 3333322222211 133 4578888888887 589999988862 21 11
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
.-|...+.|.++
T Consensus 205 s~M~~~v~vv~~ 216 (228)
T MTH00008 205 SFMPIVLEAVDT 216 (228)
T ss_pred cCceeEEEEECH
Confidence 235666666553
No 125
>PRK13202 ureB urease subunit beta; Reviewed
Probab=22.44 E-value=2.8e+02 Score=22.63 Aligned_cols=63 Identities=14% Similarity=0.058 Sum_probs=40.8
Q ss_pred eEEEecC--CEEEEEEEECCCCCc--eeeeCCCCCCCCCCCC-----C----CC-CCCcccCCCCceEEEEEECCCccc
Q 012003 63 ILNVTTN--WNVVVNVKNDLDEPL--LLTWNGVQHRKNSWQD-----G----VL-GTNCPIPAGWNWTYQFQVKDQIGS 127 (473)
Q Consensus 63 ~i~v~~G--d~v~v~v~N~l~~~~--siH~HG~~~~~~~~~D-----G----v~-~tq~~I~PG~~~~Y~f~~~~~~Gt 127 (473)
.|++.+| +++.++|+|.-+.+. .-|+|=.+.+..-..| | .| +|..-..||++.+-+... -.|.
T Consensus 12 ~I~ln~grr~~~~l~V~NtGDRPIQVGSHyHF~E~N~aL~FDR~~A~G~RLdIpaGTavRFEPG~~k~V~LV~--~gG~ 88 (104)
T PRK13202 12 DIEMNAAALSRLQMRIINAGDRPVQVGSHVHLPQANRALSFDRATAHGYRLDIPAATAVRFEPGIPQIVGLVP--LGGR 88 (104)
T ss_pred CEEeCCCCCceEEEEEEeCCCCceEEccccchhhcCcceeecHhHhcCcccccCCCCeEEECCCCeEEEEEEE--ccCC
Confidence 4899999 689999999988764 4577755443211111 1 23 355567888888877754 3554
No 126
>KOG1554 consensus COP9 signalosome, subunit CSN5 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=22.26 E-value=57 Score=31.51 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=16.4
Q ss_pred ceeeccChh---------------hhhcCCeeeEEEEEcCC
Q 012003 127 SFFYFPSLD---------------FQRAAGGYGGIIINNRD 152 (473)
Q Consensus 127 t~wYH~H~~---------------~q~~~Gl~G~liV~~~~ 152 (473)
.=|||+|.+ .|...--+-+++|+|..
T Consensus 134 VGWyHSHPgYgCWLSgIDVsTQ~lNQ~fQePfvAvViDP~R 174 (347)
T KOG1554|consen 134 VGWYHSHPGYGCWLSGIDVSTQMLNQRFQEPFVAVVIDPTR 174 (347)
T ss_pred eeeeecCCCCCccccCcchhHHHHhhhhcCCeEEEEecCcc
Confidence 459999953 13333467777777654
No 127
>PF10794 DUF2606: Protein of unknown function (DUF2606); InterPro: IPR019730 This entry represents bacterial proteins with unknown function.
Probab=22.17 E-value=1.8e+02 Score=24.32 Aligned_cols=57 Identities=9% Similarity=0.071 Sum_probs=34.1
Q ss_pred hHHHHHHHHHHHhhcc----ccCCCeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEE
Q 012003 10 SCVSFFFILLWLLNGC----FGGDPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNV 66 (473)
Q Consensus 10 ~~~~~~~~~~~l~~~~----~a~~~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v 66 (473)
.+.++++.++++..++ ++.......+|.++..+..| +|++..++---...|.|.++.
T Consensus 16 ~~i~~l~i~~l~~c~~~~es~~~k~~~pVT~hVen~e~~pi~~~ev~lmKa~ds~~qPs~ei 77 (131)
T PF10794_consen 16 KLIWFLVIIVLCGCIANNESAASKVVNPVTFHVENAEGQPIKDFEVTLMKAADSDPQPSKEI 77 (131)
T ss_pred hHHHHHHHHHHhcccccchhhhceecccEEEEEecCCCCcccceEEEEEeccccCCCCchhh
Confidence 5666655555543322 22223347888888888766 577766666556677776543
No 128
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=22.14 E-value=4.4e+02 Score=23.46 Aligned_cols=40 Identities=10% Similarity=-0.174 Sum_probs=27.8
Q ss_pred cCCCCceEEEEEECCCccceeeccCh--h-hhhcCCeeeEEEEEcC
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSL--D-FQRAAGGYGGIIINNR 151 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~-~q~~~Gl~G~liV~~~ 151 (473)
+-||..-...|.+ +++|+|+-.|.- + .|. .|.+.+.|.++
T Consensus 107 avPGr~n~l~~~~-~~~G~y~gqCsElCG~gHs--~M~~~V~vvs~ 149 (162)
T PTZ00047 107 AIPGRLHKINTFI-LREGVFYGQCSEMCGTLHG--FMPIVVEAVSP 149 (162)
T ss_pred ccCCceEEEEEec-CCCeEEEEEcchhcCcCcc--CceEEEEEeCH
Confidence 4578777777877 589999999983 2 232 36777777653
No 129
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=22.09 E-value=2.6e+02 Score=26.32 Aligned_cols=75 Identities=11% Similarity=-0.026 Sum_probs=48.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~~ 139 (473)
..|.+..|..|+++++-. +.-++...-.+. ..+| .-||..-+..|++ +++|+|.-.|-- |.+-
T Consensus 139 nel~lP~g~pV~~~ltS~-DViHSF~VP~l~----~K~D--------aiPG~~n~~~~~~-~~~G~y~g~CaE~CG~~H- 203 (226)
T TIGR01433 139 NEIAFPVNTPINFKITSN-SVMNSFFIPQLG----SQIY--------AMAGMQTKLHLIA-NEPGVYDGISANYSGPGF- 203 (226)
T ss_pred ceEEEECCCEEEEEEEEC-chhhhhhhhhcC----Ceee--------cCCCceEEEEEEe-CCCEEEEEEchhhcCcCc-
Confidence 578999999999998866 222222222221 1133 4478887888887 689999988872 3222
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
..|...++|.++
T Consensus 204 a~M~~~V~v~~~ 215 (226)
T TIGR01433 204 SGMKFKAIATDR 215 (226)
T ss_pred cCCeEEEEEECH
Confidence 247777777764
No 130
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.94 E-value=2.5e+02 Score=26.37 Aligned_cols=59 Identities=10% Similarity=0.125 Sum_probs=41.6
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.+..|+.+||++.+... .|.|.+.+...+ +..-||..-.+.+++++ +| .|+...+-
T Consensus 140 n~l~lP~~~~v~~~~ts~DV--iHsf~ip~~~~k----------------~d~~Pg~~~~~~~~~~~-~g-~y~~~C~e 198 (228)
T MTH00140 140 NRLVLPYSVDTRVLVTSADV--IHSWTVPSLGVK----------------VDAIPGRLNQLSFEPKR-PG-VFYGQCSE 198 (228)
T ss_pred CeEEEeeCcEEEEEEEcCcc--ccceeccccCce----------------eECCCCcceeEEEEeCC-CE-EEEEECcc
Confidence 56889999999999998553 466666654433 33447777788888874 67 78776543
No 131
>KOG4387 consensus Ornithine decarboxylase antizyme [Amino acid transport and metabolism]
Probab=21.82 E-value=34 Score=30.64 Aligned_cols=28 Identities=14% Similarity=0.281 Sum_probs=23.5
Q ss_pred EEecCCEEEEEEEECCCCCceeeeCCCC
Q 012003 65 NVTTNWNVVVNVKNDLDEPLLLTWNGVQ 92 (473)
Q Consensus 65 ~v~~Gd~v~v~v~N~l~~~~siH~HG~~ 92 (473)
...-++++.+++.|++...+++||||+-
T Consensus 72 ~~n~~~~~~~d~~~rlt~~~s~~W~~vl 99 (191)
T KOG4387|consen 72 PGNDRKPGILDFQERLTVAKSMNWHGVL 99 (191)
T ss_pred cccCCCCcEEeccchhheeeecccceEE
Confidence 3445677899999999999999999984
No 132
>PF14326 DUF4384: Domain of unknown function (DUF4384)
Probab=21.57 E-value=3.8e+02 Score=20.51 Aligned_cols=15 Identities=27% Similarity=0.361 Sum_probs=11.2
Q ss_pred EeCCcEEEEEEeEeC
Q 012003 222 VEPGKTYRLRVHNVG 236 (473)
Q Consensus 222 v~~G~~~rlRliN~~ 236 (473)
.+.||+++|++-..-
T Consensus 3 ~~~Ge~v~~~~~~~~ 17 (83)
T PF14326_consen 3 YRVGERVRFRVTSNR 17 (83)
T ss_pred ccCCCEEEEEEEeCC
Confidence 467888888887743
No 133
>MTH00051 COX2 cytochrome c oxidase subunit II; Provisional
Probab=21.41 E-value=6.9e+02 Score=23.55 Aligned_cols=73 Identities=18% Similarity=-0.083 Sum_probs=45.1
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--h-hhh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--D-FQR 138 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~-~q~ 138 (473)
..|.+..|..|++.++.. +.-++...-++.. .+| .-||..-...|.+ +++|+|+--|.- | .|.
T Consensus 144 n~lvlP~~~~v~~~itS~-DViHsf~vp~lg~----k~d--------aiPG~~~~~~~~~-~~~G~y~g~Cse~CG~~Hs 209 (234)
T MTH00051 144 NRLIVPIQTQVRVLVTAA-DVLHSFAVPSLSV----KID--------AVPGRLNQTSFFI-KRPGVFYGQCSEICGANHS 209 (234)
T ss_pred eEEEEecCcEEEEEEEeC-chhccccccccCc----eeE--------ccCCceEeEEEEe-CCCEEEEEEChhhcCcccc
Confidence 468889999999999987 3322222222211 123 3578777778887 589999988873 2 232
Q ss_pred cCCeeeEEEEEc
Q 012003 139 AAGGYGGIIINN 150 (473)
Q Consensus 139 ~~Gl~G~liV~~ 150 (473)
-|...+.|.+
T Consensus 210 --~M~i~v~vv~ 219 (234)
T MTH00051 210 --FMPIVIEGVS 219 (234)
T ss_pred --cCeeEEEEEC
Confidence 2455555554
No 134
>TIGR03396 PC_PLC phospholipase C, phosphocholine-specific, Pseudomonas-type. Members of this protein family are bacterial, phosphatidylcholine-hydrolyzing phospholipase C enzymes, with a characteristic domain architecture as found in hemolytyic (PlcH) and nonhemolytic (PlcN) secreted enzymes of Pseudomonas aeruginosa. PlcH hydrolyzes phosphatidylcholine to diacylglycerol and phosphocholine, but unlike PlcN can also hydrolyze sphingomyelin to ceramide ((N-acylsphingosine)) and phosphocholine. Members of this family share the twin-arginine signal sequence for Sec-independent transport across the plasma membrane. PlcH is secreted as a heterodimer with a small chaperone, PlcR, encoded immediately downstream.
Probab=21.37 E-value=5.4e+02 Score=28.68 Aligned_cols=80 Identities=16% Similarity=0.153 Sum_probs=47.0
Q ss_pred cCCCceEEEEEEc--CCCCCceEEEec---CCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEE
Q 012003 44 SPLGDKQQVIGIN--GQFPGPILNVTT---NWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQ 118 (473)
Q Consensus 44 ~~dG~~~~~~~~N--g~~pgP~i~v~~---Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~ 118 (473)
.|+|+.|+..+-- ..-+.|.++++. ...|+|+|.|.-.....+|..--.. .++.+ ....|++|++.+-.
T Consensus 574 GPnGf~R~f~G~~~~~~~~~~~~~~~~d~a~G~L~L~L~N~G~~a~~ftV~d~~Y-----~~~~p-r~ytV~aG~~~~~~ 647 (690)
T TIGR03396 574 GPNGFLREFRGNAAAAAGAVPEVRVCYDVANGNLYLTLSNAGRSPVTVTVTDNAY-----GGAGP-RTVTVAPGQRVELH 647 (690)
T ss_pred CCCceeEEeecccccccCCCCceEEEEecCCCEEEEEEEeCCCCcEEEEEEeCCC-----CCCCC-EEEEECCCCEEEEE
Confidence 4556655443311 023457777754 4469999999988888877652211 11112 12457899998888
Q ss_pred EEECCCccceeec
Q 012003 119 FQVKDQIGSFFYF 131 (473)
Q Consensus 119 f~~~~~~Gt~wYH 131 (473)
|.+. ..+ -||.
T Consensus 648 w~l~-~s~-GWYD 658 (690)
T TIGR03396 648 WDLS-ASG-GWYD 658 (690)
T ss_pred Eecc-CCC-CceE
Confidence 8763 222 5664
No 135
>PRK15208 long polar fimbrial chaperone LpfB; Provisional
Probab=20.64 E-value=4.7e+02 Score=24.53 Aligned_cols=19 Identities=21% Similarity=0.335 Sum_probs=15.1
Q ss_pred CceEEEecCCEEEEEEEEC
Q 012003 61 GPILNVTTNWNVVVNVKND 79 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~ 79 (473)
.|.+|+++|+.-.||+...
T Consensus 73 PPl~rl~p~~~q~lRIi~~ 91 (228)
T PRK15208 73 PPLFKLDPTKNNVLRIVNI 91 (228)
T ss_pred CCeEEECCCCccEEEEEEC
Confidence 3788999998888888754
No 136
>KOG4680 consensus Uncharacterized conserved protein, contains ML domain [General function prediction only]
Probab=20.39 E-value=5.1e+02 Score=22.37 Aligned_cols=67 Identities=22% Similarity=0.329 Sum_probs=35.6
Q ss_pred EEEEEEEEEEEecCCCceE---EEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcc
Q 012003 32 VFYDWTISYVTASPLGDKQ---QVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCP 108 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~~~---~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 108 (473)
-+|...+++..+.|+-..+ -.+.++|.. |-+| ..|.-| |.|.=. -+|.|--... --|- +.||
T Consensus 34 d~~~VkV~~Vni~PnP~a~Ge~aTf~i~~nt-g~tI--s~Gk~V-IeV~y~-----gi~ihsethD---LCde---tsCP 98 (153)
T KOG4680|consen 34 DEYEVKVKEVNISPNPPARGENATFSISGNT-GETI--SEGKYV-IEVSYG-----GIRIHSETHD---LCDE---TSCP 98 (153)
T ss_pred ccceEEEEEEecCCCCCCCCCccEEEEeccc-ccEe--eCCeEE-EEEEEe-----eEEEeecccc---cccc---ccCC
Confidence 4678899999998874322 345666654 3333 234333 544322 2333322111 0121 4699
Q ss_pred cCCCC
Q 012003 109 IPAGW 113 (473)
Q Consensus 109 I~PG~ 113 (473)
|+||+
T Consensus 99 VepG~ 103 (153)
T KOG4680|consen 99 VEPGD 103 (153)
T ss_pred cCcCc
Confidence 99995
No 137
>PF10636 hemP: Hemin uptake protein hemP; InterPro: IPR019600 This entry represents bacterial proteins that are involved in the uptake of the iron source hemin []. ; PDB: 2JRA_B 2LOJ_A.
Probab=20.36 E-value=1.5e+02 Score=19.53 Aligned_cols=19 Identities=32% Similarity=0.564 Sum_probs=15.1
Q ss_pred eEEEEeCCcEEEEEEeEeC
Q 012003 218 QLINVEPGKTYRLRVHNVG 236 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~ 236 (473)
...-...|+.||||+-..+
T Consensus 14 ev~I~H~g~~Y~LR~Tr~g 32 (38)
T PF10636_consen 14 EVRIEHGGQIYRLRITRQG 32 (38)
T ss_dssp EEEEEETTEEEEEEEETTT
T ss_pred EEEEEeCCeEEEeeEccCC
Confidence 5566778999999997654
No 138
>PF14524 Wzt_C: Wzt C-terminal domain; PDB: 2R5O_B.
Probab=20.30 E-value=4.4e+02 Score=21.70 Aligned_cols=72 Identities=14% Similarity=0.218 Sum_probs=40.4
Q ss_pred EEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeee----eeeEEEEcCCceEEEEEEeCC--CCCcceEEEE
Q 012003 221 NVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQ----NYTNMDIHVGQSFSFLVTTDQ--NASSDYYIVA 294 (473)
Q Consensus 221 ~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~----~~d~v~l~pGeR~dv~v~~~~--~~g~~y~i~~ 294 (473)
.+..|+.+++|+-=......-.+. -.+.+...+|..+-.. ....+....++++.+.++++. .+| .|.|.+
T Consensus 30 ~~~~ge~~~i~i~~~~~~~i~~~~---~~~~i~~~~g~~v~~~~t~~~~~~~~~~~~g~~~~~~~i~~~L~~G-~Y~i~v 105 (142)
T PF14524_consen 30 SFESGEPIRIRIDYEVNEDIDDPV---FGFAIRDSDGQRVFGTNTYDSGFPIPLSEGGTYEVTFTIPKPLNPG-EYSISV 105 (142)
T ss_dssp SEETTSEEEEEEEEEESS-EEEEE---EEEEEEETT--EEEEEEHHHHT--EEE-TT-EEEEEEEEE--B-SE-EEEEEE
T ss_pred EEeCCCEEEEEEEEEECCCCCccE---EEEEEEcCCCCEEEEECccccCccccccCCCEEEEEEEEcCccCCC-eEEEEE
Confidence 477899998888666544333322 3355666777665321 122444444888888888764 367 999987
Q ss_pred ee
Q 012003 295 SP 296 (473)
Q Consensus 295 ~~ 296 (473)
..
T Consensus 106 ~l 107 (142)
T PF14524_consen 106 GL 107 (142)
T ss_dssp EE
T ss_pred EE
Confidence 66
No 139
>PLN03148 Blue copper-like protein; Provisional
Probab=20.13 E-value=4.7e+02 Score=23.42 Aligned_cols=32 Identities=9% Similarity=0.155 Sum_probs=26.0
Q ss_pred EEEECCCccceeeccChhhhhcCCeeeEEEEEcC
Q 012003 118 QFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNR 151 (473)
Q Consensus 118 ~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 151 (473)
.|++ +++|+|+|=|- ..|=..||.=.|.|.+.
T Consensus 89 ~v~L-~~~G~~YFIcg-~ghC~~GmKl~I~V~~~ 120 (167)
T PLN03148 89 FIPL-NKAKRYYFICG-NGQCFNGMKVTILVHPL 120 (167)
T ss_pred EEEe-cCCccEEEEcC-CCccccCCEEEEEEcCC
Confidence 5667 47999999998 46778899999999764
No 140
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=20.07 E-value=59 Score=26.13 Aligned_cols=12 Identities=17% Similarity=0.293 Sum_probs=4.7
Q ss_pred HHHHHHHhhccc
Q 012003 15 FFILLWLLNGCF 26 (473)
Q Consensus 15 ~~~~~~l~~~~~ 26 (473)
||++++|+++..
T Consensus 12 ~LA~lLlisSev 23 (95)
T PF07172_consen 12 LLAALLLISSEV 23 (95)
T ss_pred HHHHHHHHHhhh
Confidence 333334444433
Done!