Query 012003
Match_columns 473
No_of_seqs 222 out of 2138
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 19:41:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012003.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012003hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3sqr_A Laccase; multicopper ox 100.0 2.3E-82 7.9E-87 669.8 50.5 402 29-472 65-480 (580)
2 1aoz_A Ascorbate oxidase; oxid 100.0 4.2E-82 1.4E-86 672.1 51.4 425 30-472 2-462 (552)
3 3t6v_A Laccase; beta barrel, o 100.0 5.7E-80 2E-84 644.1 47.8 400 32-470 5-412 (495)
4 3pxl_A Laccase; 4-copper prote 100.0 7.9E-80 2.7E-84 643.1 47.5 397 32-470 4-410 (499)
5 1zpu_A Iron transport multicop 100.0 3.1E-79 1.1E-83 645.8 47.8 398 30-471 1-408 (534)
6 1v10_A Laccase; multicopper bl 100.0 8.4E-79 2.9E-83 641.6 44.6 406 28-472 20-434 (521)
7 1hfu_A Laccase 1; oxidoreducta 100.0 3.3E-76 1.1E-80 619.7 44.4 397 33-472 6-413 (503)
8 2q9o_A Laccase-1; multicopper 100.0 1.5E-74 5E-79 613.7 49.3 402 28-471 30-447 (559)
9 2uxt_A Protein SUFI, SUFI; oxi 100.0 5.6E-70 1.9E-74 564.7 27.5 350 30-470 17-382 (451)
10 2xu9_A Laccase; oxidoreductase 100.0 1.6E-68 5.4E-73 553.0 34.9 351 27-471 12-386 (439)
11 3abg_A Bilirubin oxidase; clea 100.0 1.2E-67 4.2E-72 556.4 32.5 360 31-472 36-415 (534)
12 2wsd_A Spore coat protein A; o 100.0 1.8E-66 6.2E-71 547.0 37.3 363 31-470 25-434 (513)
13 3aw5_A Multicopper oxidase; be 100.0 8.4E-67 2.9E-71 540.1 29.1 324 53-469 28-376 (448)
14 3zx1_A Oxidoreductase, putativ 100.0 2.2E-65 7.6E-70 530.8 36.0 354 26-469 45-421 (481)
15 3od3_A Blue copper oxidase CUE 100.0 9E-65 3.1E-69 526.0 32.0 248 29-297 15-272 (488)
16 3gyr_A PHS, phenoxazinone synt 100.0 1.9E-62 6.6E-67 529.4 37.4 247 30-295 31-355 (612)
17 2g23_A PHS, phenoxazinone synt 100.0 1.1E-61 3.8E-66 515.1 38.6 249 29-296 30-356 (612)
18 3g5w_A Multicopper oxidase typ 100.0 1.5E-54 5.2E-59 429.1 31.5 271 30-319 1-278 (318)
19 2zwn_A Two-domain type laccase 100.0 2.1E-53 7.3E-58 425.2 32.4 271 30-319 2-279 (339)
20 2j5w_A Ceruloplasmin, ferroxid 100.0 3.4E-53 1.1E-57 478.7 29.6 392 25-471 15-489 (1065)
21 1kbv_A ANIA, major outer membr 100.0 5E-51 1.7E-55 406.1 29.2 262 27-319 34-309 (327)
22 3gdc_A Multicopper oxidase; be 100.0 2.2E-48 7.6E-53 380.3 27.7 234 31-297 34-273 (288)
23 2zoo_A Probable nitrite reduct 100.0 4.5E-47 1.5E-51 393.5 29.3 268 26-319 23-299 (442)
24 1mzy_A Copper-containing nitri 100.0 2.1E-46 7.2E-51 374.2 22.7 269 26-319 27-320 (333)
25 1oe1_A Dissimilatory copper-co 100.0 6.1E-46 2.1E-50 371.4 24.9 267 28-319 29-320 (336)
26 3kw8_A Laccase, putative coppe 100.0 8.4E-46 2.9E-50 359.8 24.5 240 27-318 3-266 (276)
27 2bw4_A Copper-containing nitri 100.0 1.3E-45 4.5E-50 369.6 21.2 268 26-319 33-326 (340)
28 3tas_A Small laccase, multi-co 100.0 3.5E-45 1.2E-49 361.6 23.0 242 25-318 7-272 (313)
29 3t9w_A Small laccase, multi-co 100.0 5.1E-45 1.7E-49 357.8 22.3 242 25-318 23-288 (299)
30 2dv6_A Nitrite reductase; elec 100.0 2.3E-40 7.9E-45 343.8 30.8 258 29-319 161-435 (447)
31 3cg8_A Laccase; oxidoreductase 100.0 3.1E-41 1.1E-45 337.0 23.0 238 28-318 45-307 (343)
32 1sdd_B Coagulation factor V; c 100.0 1.7E-41 5.9E-46 366.9 20.3 220 56-297 63-312 (647)
33 1sdd_A Coagulation factor V; c 100.0 1.2E-42 4E-47 342.6 7.6 215 50-297 49-285 (306)
34 2r7e_B Coagulation factor VIII 100.0 9.6E-42 3.3E-46 371.6 11.8 248 28-296 130-440 (770)
35 2r7e_A Coagulation factor VIII 100.0 1.1E-41 3.9E-46 370.5 11.9 239 35-297 50-314 (742)
36 2dv6_A Nitrite reductase; elec 100.0 7.2E-38 2.5E-42 325.0 18.9 343 27-470 24-377 (447)
37 2r7e_A Coagulation factor VIII 100.0 3.9E-37 1.4E-41 334.8 7.7 215 58-297 448-696 (742)
38 2j5w_A Ceruloplasmin, ferroxid 100.0 2.2E-34 7.5E-39 325.4 10.3 204 48-296 616-838 (1065)
39 3cvb_A Plastocyanin; cupredoxi 99.7 1.1E-17 3.7E-22 137.7 2.7 90 57-150 14-105 (105)
40 2uxt_A Protein SUFI, SUFI; oxi 99.6 1.4E-14 4.7E-19 149.7 22.2 237 31-297 152-426 (451)
41 3kw8_A Laccase, putative coppe 99.6 7.3E-16 2.5E-20 149.0 11.7 99 53-153 157-268 (276)
42 2xu9_A Laccase; oxidoreductase 99.6 1.4E-14 4.9E-19 149.2 18.8 241 31-297 146-425 (439)
43 2zwn_A Two-domain type laccase 99.6 5.3E-15 1.8E-19 147.3 13.2 189 194-469 24-215 (339)
44 1hfu_A Laccase 1; oxidoreducta 99.5 3.9E-13 1.3E-17 140.7 22.0 260 33-297 143-455 (503)
45 1v10_A Laccase; multicopper bl 99.5 2.8E-13 9.5E-18 142.4 20.7 239 51-297 192-476 (521)
46 2cal_A Rusticyanin; iron respi 99.5 3.9E-14 1.3E-18 124.4 9.8 99 46-149 46-154 (154)
47 3gdc_A Multicopper oxidase; be 99.5 3.8E-14 1.3E-18 137.8 9.2 179 194-471 55-235 (288)
48 1iby_A Nitrosocyanin; RED copp 99.5 1.3E-13 4.4E-18 114.6 10.1 104 33-150 3-112 (112)
49 3cg8_A Laccase; oxidoreductase 99.5 9.3E-14 3.2E-18 138.3 10.5 104 53-158 198-314 (343)
50 3g5w_A Multicopper oxidase typ 99.5 1.1E-13 3.8E-18 136.3 9.8 191 194-469 23-214 (318)
51 3zx1_A Oxidoreductase, putativ 99.4 2.8E-12 9.5E-17 132.8 18.2 240 32-297 181-466 (481)
52 3t6v_A Laccase; beta barrel, o 99.4 1.2E-11 4.2E-16 128.7 21.1 243 50-297 168-456 (495)
53 1fwx_A Nitrous oxide reductase 99.4 6.3E-13 2.1E-17 139.4 10.7 94 46-151 497-593 (595)
54 1aoz_A Ascorbate oxidase; oxid 99.4 1.5E-11 5.2E-16 130.1 19.2 226 63-297 205-510 (552)
55 1zpu_A Iron transport multicop 99.4 7.1E-11 2.4E-15 124.3 23.1 243 50-297 167-466 (534)
56 3pxl_A Laccase; 4-copper prote 99.3 3.6E-11 1.2E-15 125.2 19.4 243 50-297 166-456 (499)
57 3od3_A Blue copper oxidase CUE 99.3 2.8E-11 9.4E-16 125.4 17.6 249 33-297 152-475 (488)
58 2q9o_A Laccase-1; multicopper 99.3 4.2E-11 1.4E-15 126.8 19.3 245 50-297 195-506 (559)
59 3aw5_A Multicopper oxidase; be 99.3 2.7E-11 9.1E-16 124.9 16.6 213 49-297 168-434 (448)
60 2ov0_A Amicyanin; beta-sandwic 99.3 1.3E-11 4.3E-16 101.2 9.7 78 56-149 27-105 (105)
61 2g23_A PHS, phenoxazinone synt 99.3 1.4E-10 4.7E-15 123.3 19.9 232 50-297 254-576 (612)
62 1sdd_A Coagulation factor V; c 99.2 5.2E-13 1.8E-17 130.9 -0.6 99 49-152 200-302 (306)
63 2gim_A Plastocyanin; beta shee 99.2 1.4E-11 4.6E-16 101.2 7.2 83 61-150 19-106 (106)
64 1sdd_B Coagulation factor V; c 99.2 3E-11 1E-15 130.4 9.9 102 49-152 225-329 (647)
65 2wsd_A Spore coat protein A; o 99.2 1.7E-10 5.8E-15 121.0 14.2 217 50-297 230-495 (513)
66 3abg_A Bilirubin oxidase; clea 99.2 1.7E-10 5.8E-15 121.3 13.2 229 50-297 201-460 (534)
67 3t9w_A Small laccase, multi-co 99.2 1.5E-10 5.3E-15 112.8 11.8 100 53-153 179-290 (299)
68 3tas_A Small laccase, multi-co 99.1 2.1E-10 7.2E-15 112.7 12.0 100 53-153 163-274 (313)
69 2aan_A Auracyanin A; cupredoxi 99.1 3.1E-10 1.1E-14 97.8 9.4 90 58-149 31-139 (139)
70 1qhq_A Protein (auracyanin); e 99.1 1.3E-09 4.3E-14 94.1 12.2 91 59-150 30-140 (140)
71 3sqr_A Laccase; multicopper ox 99.0 2.6E-08 9E-13 105.1 23.3 239 51-297 226-529 (580)
72 4hci_A Cupredoxin 1; structura 98.9 1.8E-09 6.2E-14 87.4 7.8 79 56-149 22-100 (100)
73 2plt_A Plastocyanin; electron 98.9 9.8E-10 3.3E-14 88.6 5.1 79 62-149 18-98 (98)
74 1pcs_A Plastocyanin; electron 98.9 9.6E-10 3.3E-14 88.7 3.8 81 61-149 18-98 (98)
75 3gyr_A PHS, phenoxazinone synt 98.9 6E-08 2.1E-12 103.9 18.7 91 194-297 459-576 (612)
76 1bxv_A Plastocyanin; copper pr 98.9 4.7E-09 1.6E-13 83.2 7.4 74 61-149 18-91 (91)
77 3c75_A Amicyanin; copper prote 98.8 7.7E-09 2.6E-13 88.1 8.6 78 56-149 54-132 (132)
78 1kbv_A ANIA, major outer membr 98.8 8.5E-09 2.9E-13 101.8 8.8 102 50-153 198-310 (327)
79 1kdj_A Plastocyanin; electron 98.8 1.1E-08 3.6E-13 83.1 7.5 82 61-149 16-102 (102)
80 1b3i_A PETE protein, protein ( 98.8 1.4E-08 4.9E-13 81.5 7.9 76 62-149 19-97 (97)
81 3erx_A Pseudoazurin; copper pr 98.8 1.5E-08 5.2E-13 84.9 7.7 74 62-150 21-94 (123)
82 3tu6_A Pseudoazurin (blue copp 98.7 1.5E-08 5.1E-13 85.4 6.8 76 62-152 23-98 (127)
83 1byp_A Protein (plastocyanin); 98.7 4.1E-08 1.4E-12 79.1 8.9 76 62-149 17-99 (99)
84 1plc_A Plastocyanin; electron 98.7 4.3E-08 1.5E-12 79.0 8.8 76 62-149 17-99 (99)
85 2r7e_B Coagulation factor VIII 98.7 3.6E-09 1.2E-13 115.4 2.2 98 51-150 355-456 (770)
86 3ef4_A Pseudoazurin, blue copp 98.7 7.7E-08 2.6E-12 80.5 9.3 75 62-151 22-96 (124)
87 1mzy_A Copper-containing nitri 98.7 5.2E-08 1.8E-12 96.4 9.5 98 51-153 210-321 (333)
88 2bw4_A Copper-containing nitri 98.6 1E-07 3.4E-12 94.6 10.8 100 51-153 216-327 (340)
89 2zoo_A Probable nitrite reduct 98.6 1.1E-07 3.8E-12 97.8 8.5 101 50-152 188-299 (442)
90 1iuz_A Plastocyanin; electron 98.5 1.4E-07 4.8E-12 75.8 6.3 77 61-149 17-98 (98)
91 1oe1_A Dissimilatory copper-co 98.5 3.4E-07 1.2E-11 90.7 10.2 99 50-153 209-321 (336)
92 1paz_A Pseudoazurin precursor; 98.5 3.1E-07 1E-11 77.0 7.9 75 62-151 21-95 (123)
93 1pmy_A Pseudoazurin; electron 98.4 3.7E-07 1.3E-11 76.5 7.0 75 62-151 21-95 (123)
94 1cuo_A Protein (azurin ISO-2); 98.4 4.8E-07 1.7E-11 76.4 7.7 92 58-150 14-129 (129)
95 1id2_A Amicyanin; beta barrel, 98.3 3E-06 1E-10 69.0 9.7 76 58-149 30-106 (106)
96 3ay2_A Lipid modified azurin p 98.3 1.9E-06 6.4E-11 75.8 8.2 97 53-150 47-167 (167)
97 2ccw_A Azurin II, AZN-2; elect 98.2 7.2E-06 2.5E-10 69.1 9.6 91 58-149 14-128 (129)
98 1nwp_A Azurin; electron transp 98.2 7.3E-06 2.5E-10 69.0 9.1 91 58-149 14-128 (128)
99 2iaa_C Azurin; quinoprotein, t 98.1 8.6E-06 3E-10 68.5 9.2 91 58-149 13-127 (128)
100 3sbq_A Nitrous-oxide reductase 98.1 8.8E-06 3E-10 83.9 10.8 93 46-151 540-638 (638)
101 2ux6_A Pseudoazurin; type-1 co 98.1 4.7E-06 1.6E-10 69.6 6.9 73 62-151 21-93 (122)
102 3fsa_A Azurin; copper, cupredo 97.6 0.00027 9.2E-09 58.6 8.8 88 58-149 14-125 (125)
103 2cua_A Protein (CUA); CUA cent 97.1 0.0027 9.3E-08 53.7 10.0 73 62-150 60-135 (135)
104 2aan_A Auracyanin A; cupredoxi 97.0 0.0019 6.4E-08 54.9 8.0 78 217-296 34-125 (139)
105 3cvb_A Plastocyanin; cupredoxi 96.9 0.00047 1.6E-08 55.4 3.1 73 217-295 18-90 (105)
106 3s8f_B Cytochrome C oxidase su 96.9 0.0055 1.9E-07 53.6 9.8 81 56-150 87-168 (168)
107 1iby_A Nitrosocyanin; RED copp 96.8 0.0036 1.2E-07 50.9 8.0 61 217-296 37-97 (112)
108 4hci_A Cupredoxin 1; structura 96.1 0.015 5.1E-07 46.2 7.2 60 217-295 27-86 (100)
109 2cal_A Rusticyanin; iron respi 95.5 0.025 8.6E-07 48.8 6.7 84 195-296 52-139 (154)
110 2gim_A Plastocyanin; beta shee 95.4 0.0024 8.4E-08 51.3 -0.2 73 217-295 19-91 (106)
111 2ccw_A Azurin II, AZN-2; elect 95.4 0.015 5E-07 48.7 4.6 78 217-295 17-113 (129)
112 1qhq_A Protein (auracyanin); e 95.3 0.0099 3.4E-07 50.4 3.4 77 217-296 32-124 (140)
113 1cuo_A Protein (azurin ISO-2); 95.0 0.021 7.1E-07 47.8 4.4 78 217-295 17-113 (129)
114 1nwp_A Azurin; electron transp 94.9 0.019 6.4E-07 47.9 3.8 78 217-295 17-113 (128)
115 2iaa_C Azurin; quinoprotein, t 94.6 0.036 1.2E-06 46.2 4.8 78 217-295 16-112 (128)
116 3ay2_A Lipid modified azurin p 93.7 0.032 1.1E-06 48.7 2.8 78 217-295 57-151 (167)
117 2plt_A Plastocyanin; electron 93.7 0.076 2.6E-06 41.6 4.8 68 217-295 17-84 (98)
118 1fwx_A Nitrous oxide reductase 93.6 0.21 7.1E-06 52.4 9.3 62 217-296 512-575 (595)
119 1pcs_A Plastocyanin; electron 93.5 0.068 2.3E-06 41.9 4.2 67 217-295 18-84 (98)
120 3fsa_A Azurin; copper, cupredo 93.4 0.027 9.4E-07 46.5 1.8 78 217-295 17-113 (125)
121 1bxv_A Plastocyanin; copper pr 93.1 0.19 6.6E-06 38.5 6.2 60 217-295 18-77 (91)
122 2ov0_A Amicyanin; beta-sandwic 91.9 0.2 6.9E-06 39.8 5.1 63 217-296 32-94 (105)
123 1b3i_A PETE protein, protein ( 90.9 0.16 5.6E-06 39.5 3.5 66 217-295 18-83 (97)
124 1iuz_A Plastocyanin; electron 90.3 0.47 1.6E-05 37.0 5.6 68 217-295 17-84 (98)
125 1kdj_A Plastocyanin; electron 89.5 0.16 5.3E-06 40.1 2.3 65 217-295 16-88 (102)
126 3sbq_A Nitrous-oxide reductase 85.1 2.7 9.3E-05 43.6 8.8 62 217-296 557-620 (638)
127 2cua_A Protein (CUA); CUA cent 83.9 3.1 0.00011 34.6 7.3 59 218-296 60-118 (135)
128 3c75_A Amicyanin; copper prote 83.5 1.1 3.8E-05 37.2 4.4 62 217-295 59-120 (132)
129 1id2_A Amicyanin; beta barrel, 83.2 1.5 5.1E-05 34.7 4.9 62 217-295 33-94 (106)
130 3isy_A Bsupi, intracellular pr 82.6 11 0.00037 30.6 9.8 72 224-297 16-102 (120)
131 3erx_A Pseudoazurin; copper pr 78.8 0.91 3.1E-05 37.3 2.2 74 217-316 20-93 (123)
132 3s8f_B Cytochrome C oxidase su 78.4 5.7 0.0002 34.3 7.2 59 218-296 93-151 (168)
133 3isy_A Bsupi, intracellular pr 77.8 25 0.00084 28.4 10.4 74 48-132 20-99 (120)
134 1cyx_A CYOA; electron transpor 77.2 5.2 0.00018 35.7 6.7 74 62-149 41-115 (205)
135 1byp_A Protein (plastocyanin); 75.5 1.9 6.5E-05 33.3 3.1 30 433-464 17-46 (99)
136 2gsm_B Cytochrome C oxidase su 74.2 38 0.0013 31.3 12.2 75 62-151 171-247 (262)
137 3hb3_B Cytochrome C oxidase su 72.5 37 0.0013 32.0 11.8 76 62-151 189-265 (298)
138 3tu6_A Pseudoazurin (blue copp 68.5 1.6 5.3E-05 36.1 1.1 75 217-317 22-96 (127)
139 1paz_A Pseudoazurin precursor; 64.6 3 0.0001 34.1 2.1 57 217-295 20-79 (123)
140 1pmy_A Pseudoazurin; electron 62.5 2.8 9.6E-05 34.2 1.5 74 217-316 20-93 (123)
141 1plc_A Plastocyanin; electron 62.4 5.8 0.0002 30.5 3.4 30 432-463 16-45 (99)
142 1v54_B Cytochrome C oxidase po 62.2 67 0.0023 28.9 10.9 74 62-151 140-216 (227)
143 2ux6_A Pseudoazurin; type-1 co 61.2 4.8 0.00016 32.7 2.7 60 217-295 20-79 (122)
144 2r39_A FIXG-related protein; s 59.7 27 0.00091 27.9 7.0 47 226-282 33-81 (118)
145 3ef4_A Pseudoazurin, blue copp 56.8 4.2 0.00014 33.3 1.6 74 217-316 21-94 (124)
146 2f1e_A Protein APAG; APAG prot 55.9 7.2 0.00025 32.0 2.9 47 73-119 34-86 (127)
147 1xvs_A Protein APAG; MCSG APC2 52.9 7.4 0.00025 31.9 2.5 48 73-120 33-86 (126)
148 1xq4_A Protein APAG; all beta 51.3 9.9 0.00034 31.7 3.0 49 73-121 38-92 (139)
149 1cyx_A CYOA; electron transpor 50.2 47 0.0016 29.5 7.4 60 218-297 41-100 (205)
150 2p9r_A Alpha-2-M, alpha-2-macr 47.9 18 0.00063 27.9 4.1 70 222-296 13-84 (102)
151 1x9u_A Umecyanin; cupredoxin, 47.8 15 0.00051 29.6 3.5 35 117-152 72-107 (116)
152 1tza_A APAG protein, SOR45; st 46.3 8.7 0.0003 31.8 1.9 48 73-120 33-86 (134)
153 1xwv_A DER F II; beta sheets, 43.5 28 0.00096 28.3 4.7 62 61-122 24-93 (129)
154 1nep_A EPV20, BNPC2, epididyma 43.3 25 0.00085 28.7 4.3 61 62-122 26-95 (130)
155 1yew_A Particulate methane mon 41.9 63 0.0022 31.1 7.3 69 49-123 251-336 (382)
156 3rfr_A PMOB; membrane, oxidore 41.3 83 0.0028 30.7 8.1 69 48-123 284-368 (419)
157 2h7w_A Chagasin; beta-strands, 41.1 1.1E+02 0.0038 24.9 7.9 65 61-128 32-104 (131)
158 2xzz_A Protein-glutamine gamma 40.0 24 0.00083 27.6 3.6 52 71-127 23-78 (102)
159 1ws8_A Mavicyanin; oxidized fo 34.2 31 0.0011 27.2 3.4 35 116-151 71-105 (109)
160 2wtp_A ORF131 protein, CZCE; m 31.4 18 0.00063 29.6 1.6 19 218-236 71-89 (131)
161 2gsm_B Cytochrome C oxidase su 30.2 1.2E+02 0.0042 27.9 7.2 59 218-296 171-229 (262)
162 1jer_A Cucumber stellacyanin; 27.9 67 0.0023 26.5 4.5 35 118-153 76-111 (138)
163 3hb3_B Cytochrome C oxidase su 25.4 1.6E+02 0.0055 27.7 7.2 59 218-296 189-247 (298)
164 1fft_B Ubiquinol oxidase; elec 25.4 43 0.0015 31.9 3.2 73 62-149 151-225 (315)
165 2hj1_A Hypothetical protein; s 25.2 24 0.00083 27.3 1.2 24 51-74 59-82 (97)
166 2c34_A ICP, inhibitor of cyste 23.0 2.8E+02 0.0095 21.8 8.4 67 61-128 14-89 (116)
167 3idu_A Uncharacterized protein 22.9 3E+02 0.01 22.1 10.7 67 221-297 28-97 (127)
168 1xvs_A Protein APAG; MCSG APC2 22.0 1.1E+02 0.0037 24.8 4.6 49 227-278 31-83 (126)
169 3rpf_C Molybdopterin convertin 21.8 34 0.0012 24.7 1.4 25 50-74 42-67 (74)
170 2x3c_A Toxic extracellular end 21.6 99 0.0034 29.7 5.0 25 108-132 96-125 (343)
171 2kut_A Uncharacterized protein 21.1 1.9E+02 0.0066 23.1 5.9 54 67-122 13-74 (122)
172 2wtp_A ORF131 protein, CZCE; m 21.0 32 0.0011 28.1 1.2 17 63-79 72-88 (131)
173 2aqm_A Superoxide dismutase [C 20.9 53 0.0018 27.7 2.6 25 438-462 28-52 (154)
174 1eqw_A Cu,Zn superoxide dismut 20.3 54 0.0018 27.7 2.5 25 438-462 28-52 (156)
175 1eso_A SOD, Cu, Zn superoxide 20.1 55 0.0019 27.6 2.5 25 438-462 28-52 (154)
No 1
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=100.00 E-value=2.3e-82 Score=669.82 Aligned_cols=402 Identities=23% Similarity=0.341 Sum_probs=316.0
Q ss_pred CCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-CC
Q 012003 29 DPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TN 106 (473)
Q Consensus 29 ~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq 106 (473)
+.+|+|+|+|++..+++||+.+.+|+|||++|||+|++++||+|+|+|+|+|+ ++++|||||++|.++++|||+++ ||
T Consensus 65 ~~~~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~tsIHwHGl~~~~t~~~DGvp~vTq 144 (580)
T 3sqr_A 65 GVTREYWLSVENSTITPDGYTRSAMTFNGTVPGPAIIADWGDNLIIHVTNNLEHNGTSIHWHGIRQLGSLEYDGVPGVTQ 144 (580)
T ss_dssp CCEEEEEEEEEEEEECSSSBCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEETTCCCTTCGGGSCCBTTTB
T ss_pred ceEEEEEEEEEEEEecCCCeEEEEEEECCccCCceEEEeCCCEEEEEEEECCCCCcceEEecccccCCCccccCCCcccc
Confidence 45799999999999999999999999999999999999999999999999998 89999999999999999999998 99
Q ss_pred cccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCce-EEEEeeceecchHHHHHhhh
Q 012003 107 CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDI-TIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~l~d~~~~~~~~~~~~~~ 185 (473)
|||+||++|+|+|+++ ++||||||||.+.|+.+||+|+|||+++.. .+| |.|. +|+|+||+++...++.....
T Consensus 145 ~pI~PG~sftY~f~~~-q~GT~WYHsH~~~q~~~GL~G~lIV~~p~~--~~y---D~d~~~l~l~Dw~~~~~~~~~~~~~ 218 (580)
T 3sqr_A 145 CPIAPGDTLTYKFQVT-QYGTTWYHSHFSLQYGDGLFGPLIINGPAT--ADY---DEDVGVIFLQDWAHESVFEIWDTAR 218 (580)
T ss_dssp CCBCTTCEEEEEEECC-CCEEEEEEECSTTGGGGTCEEEEEEECCCS--SCC---SEEEEEEEEEEECSSCHHHHHHHHT
T ss_pred CCCCCCCeEEEEEECC-CCcceEEeecccccccCcCEEEEEeeCccc--CCC---CccceEEEEEEEecCCHHHHHHHHh
Confidence 9999999999999995 899999999999999999999999998754 234 8887 99999999998776654433
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCc---CCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeee
Q 012003 186 NGVDLGVPDGILINGLGPYRYDAAI---VPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ 262 (473)
Q Consensus 186 ~~~~~~~~~~~liNG~~~~~~~~~~---~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p 262 (473)
. ...+.+++++|||++.++|.... .......+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|
T Consensus 219 ~-~~~~~~d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~VIa~DG~~v~P 297 (580)
T 3sqr_A 219 L-GAPPALENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTVIANDLVPIVP 297 (580)
T ss_dssp T-SCCCCBSEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEE
T ss_pred c-cCCCCCceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEEEEeCCccCCc
Confidence 2 23567899999999988775321 1123346899999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccc
Q 012003 263 QNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQA 342 (473)
Q Consensus 263 ~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 342 (473)
..+++|.|+|||||||+|++++++| +||||+.+...+.........+|||+|.++... .|..+...... .+
T Consensus 298 ~~~~~l~i~pGqRydVlv~a~~~~g-~Y~i~a~~~~~~~~~~~~~~~~aiL~Y~~~~~~----~P~~~~~~~~~----~~ 368 (580)
T 3sqr_A 298 YTTDTLLIGIGQRYDVIVEANAAAD-NYWIRGNWGTTCSTNNEAANATGILRYDSSSIA----NPTSVGTTPRG----TC 368 (580)
T ss_dssp EEESSEEECTTCEEEEEEECCSCSS-EEEEECCCCTTTSCBTTGGGCEEEEESSTTCCC----CCCCCCCCCCC----CS
T ss_pred eEeeEEEEccceEEEEEEEeCCCCC-eEEEEEecccccCccCCCCceEEEEEECCCCCC----CCCCCCCCccc----hh
Confidence 9999999999999999999998888 999999887544322234578999999875421 12111000000 11
Q ss_pred cccc-cccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceecc-CCCCchhhhhhcCCCCccccCCC
Q 012003 343 RSIR-WNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYL-PPSTPLMLAQQFNIPGAYKLDFP 420 (473)
Q Consensus 343 ~~~~-~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~-~p~~P~l~~~~~~~~~~~~~~~~ 420 (473)
.+.. ..|.+..+.+.| ...+.++.+.. ..++...|+|||++|. +++.|+|++.+. +.. +++
T Consensus 369 ~~~~~~~L~P~~~~~~~--------~~~~~~~~l~~----~~~~~~~w~iN~~s~~~~~~~P~L~~~~~---g~~--~~~ 431 (580)
T 3sqr_A 369 EDEPVASLVPHLALDVG--------GYSLVDEQVSS----AFTNYFTWTINSSSLLLDWSSPTTLKIFN---NET--IFP 431 (580)
T ss_dssp CCSCGGGCCBSSCCBCC--------SEEEEEEEEEE----EESSSEEEEETTBCCCCCTTSCHHHHHHT---TCC--CCC
T ss_pred hcccccccccCCCCCCC--------CccceEEEEEe----ccCCceeEEECCEecccCCCCCchhhhhc---CCc--cCC
Confidence 1110 123222222222 12344444443 1346789999999997 578898876542 110 111
Q ss_pred CCCCCCCCccceEEEeec----CCcEEEEEEecCC--CCCCceeecCCccEEEeecCC
Q 012003 421 YKLMSRAPKVDTSLINGT----YKGFMEIIFQNND--TTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 421 ~~p~~~~~~~~~~~~~~~----~g~~Veivl~N~~--~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
...+++.++ .|+||||||+|.+ .+.||||||||+||||++|.|
T Consensus 432 ---------~~~~~~~~~~~~~~~~~VeiVi~n~~~~~~~HP~HLHGh~F~vv~~g~G 480 (580)
T 3sqr_A 432 ---------TEYNVVALEQTNANEEWVVYVIEDLTGFGIWHPIHLHGHDFFIVAQETD 480 (580)
T ss_dssp ---------GGGCEEEECC----CCEEEEEEEECSSSCCCEEEEESSCCEEEEEEESS
T ss_pred ---------CCcceeecccccCCCcEEEEEEeCCCccccceeeEecCceEEEEecCCC
Confidence 123455554 6999999999988 789999999999999999876
No 2
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=100.00 E-value=4.2e-82 Score=672.07 Aligned_cols=425 Identities=30% Similarity=0.560 Sum_probs=329.0
Q ss_pred CeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-CCc
Q 012003 30 PYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TNC 107 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq~ 107 (473)
.+|+|+|+|++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|+|+ ++++|||||+++..++|+||+++ |||
T Consensus 2 ~~~~y~~~v~~~~~~~dg~~~~~~~~Ng~~PGP~I~~~~GD~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~~vtq~ 81 (552)
T 1aoz_A 2 QIRHYKWEVEYMFWAPNCNENIVMGINGQFPGPTIRANAGDSVVVELTNKLHTEGVVIHWHGILQRGTPWADGTASISQC 81 (552)
T ss_dssp CEEEEEEEEEEEEECTTSSCEEEEEETTBSSCCCEEEETTCEEEEEEEECCSSCCBCEEEETCCCTTCGGGSCCBTTTBC
T ss_pred eEEEEEEEEEEEEEcCCCceEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCCCeeEEeCCCccCCCcccCCCcccccC
Confidence 5799999999999999999999999999999999999999999999999998 99999999999999999999998 999
Q ss_pred ccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhhCC
Q 012003 108 PIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVENG 187 (473)
Q Consensus 108 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~ 187 (473)
+|+||++|+|+|++ +++||||||||.+.|+.+||+|+|||++++....++ .+|+|++|+|+||+++...++...+...
T Consensus 82 ~I~PG~s~tY~f~~-~~~GT~wYHsH~~~q~~~Gl~G~liV~~~~~~~~~~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~~ 159 (552)
T 1aoz_A 82 AINPGETFFYNFTV-DNPGTFFYHGHLGMQRSAGLYGSLIVDPPQGKKEPF-HYDGEINLLLSDWWHQSIHKQEVGLSSK 159 (552)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEEECSTTTGGGTCEEEEEEECCTTCCCSS-CCSEEEEEEEEEECSSCHHHHHHHTTSS
T ss_pred CcCCCCeEEEEEEC-CCCEEEEEEECchhHHhccCeeeEEEeCCcccCCCC-CCCccceEEeecccCCCHHHHHhhhhcc
Confidence 99999999999999 689999999999999999999999999986544455 3468999999999998766554333221
Q ss_pred --CCCCCCCeEEEcCCCCCCCCCCc-----------C-CCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEE
Q 012003 188 --VDLGVPDGILINGLGPYRYDAAI-----------V-PDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV 253 (473)
Q Consensus 188 --~~~~~~~~~liNG~~~~~~~~~~-----------~-~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 253 (473)
...+.++.++|||+..++|.... . ...+..+.+++++||+|||||||+|..+.+.|+|+||+|+||
T Consensus 160 ~~~~~~~~~~~liNG~~~~~c~~~~~~~~~~~~c~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi 239 (552)
T 1aoz_A 160 PIRWIGEPQTILLNGRGQFDCSIAAKYDSNLEPCKLKGSESCAPYIFHVSPKKTYRIRIASTTALAALNFAIGNHQLLVV 239 (552)
T ss_dssp SCCCCCSCSEEEETTBCCSSSBTTGGGCTTSCBCCCCSCSTTSCCCEEECTTCEEEEEEEECCSSCEEEEEETTCCEEEE
T ss_pred cccCCCCCCeEEECCccccCcccCcccccccccccccCCCCCCceEEEEcCCCEEEEEEEcccccceEEEEEcCcEEEEE
Confidence 12245789999999988774221 0 112234589999999999999999999999999999999999
Q ss_pred eecCceeeeeeeeEEEEcCCceEEEEEEe-CCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCC--CCCCCCCCC
Q 012003 254 ETEGSYTVQQNYTNMDIHVGQSFSFLVTT-DQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGP--ASGPLPDPP 330 (473)
Q Consensus 254 a~DG~~~~p~~~d~v~l~pGeR~dv~v~~-~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~--~~~~~p~~p 330 (473)
|+||.+++|..++++.|+|||||||+|++ ++++| +|||++....... ......|+|+|.++... +..+.|..|
T Consensus 240 ~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g-~y~i~~~~~~~~~---~~~~~~ail~y~~~~~~~~p~~~~p~~p 315 (552)
T 1aoz_A 240 EADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSE-NYWVSVGTRARHP---NTPPGLTLLNYLPNSVSKLPTSPPPQTP 315 (552)
T ss_dssp EETTEEEEEEEESCEEECTTCEEEEEEECCSCTTC-CEEEEEEEESSCC---CSCCEEEEEEETTSCTTSCCSSCCCCCC
T ss_pred EECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCC-CEEEEEEcccCCC---CCccEEEEEEECCCCCCCCCCCCCCCCC
Confidence 99999999999999999999999999999 45567 9999998764211 23567899999876531 111222222
Q ss_pred CCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcC
Q 012003 331 NAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFN 410 (473)
Q Consensus 331 ~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~ 410 (473)
...+...... ..+. .+......+.| ..+++++.+..... ..++...|+|||++|..|+.|+|.+.+.+
T Consensus 316 ~~~~~~~~~~--~~l~-~l~~~~~~~~~--------~~~~~~~~l~~~~~-~~~~~~~w~iNg~s~~~p~~P~L~~~~~~ 383 (552)
T 1aoz_A 316 AWDDFDRSKN--FTYR-ITAAMGSPKPP--------VKFNRRIFLLNTQN-VINGYVKWAINDVSLALPPTPYLGAMKYN 383 (552)
T ss_dssp CTTCHHHHHH--HHTT-CCBCTTCCCCC--------SSCSEEEEEEEEEE-EETTEEEEEETTEEECCCSSCHHHHHHTT
T ss_pred cccccccccc--cccc-ccccCCCCCCC--------CCCcEEEEEEEeec-cCCCeEEEEECCCccCCCCCCHHHHHhhc
Confidence 1001100000 0000 11100011111 24567777765432 23457789999999999999999887776
Q ss_pred CCCccccCCCCCC-----------CCCCCccceEEEeecCCcEEEEEEecCCC------CCCceeecCCccEEEeecCC
Q 012003 411 IPGAYKLDFPYKL-----------MSRAPKVDTSLINGTYKGFMEIIFQNNDT------TVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 411 ~~~~~~~~~~~~p-----------~~~~~~~~~~~~~~~~g~~Veivl~N~~~------~~HP~HLHGh~F~Vl~~g~~ 472 (473)
+.+.|..+++..+ .+...+.++.++.++.|++|||+|+|.+. ..||||||||+||||++|.|
T Consensus 384 ~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v~ivi~N~~~~~~~~~~~HP~HLHGh~F~Vl~~g~G 462 (552)
T 1aoz_A 384 LLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMMKENLSETHPWHLHGHDFWVLGYGDG 462 (552)
T ss_dssp CTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEEEEEEEECCCSSTTCCCCEEEEETTCCEEEEEEEES
T ss_pred CccccccCCCccccccccccccccccccccccceEEEecCCCEEEEEEeCCcccccccCCCCCEEEcCCceEEEecccC
Confidence 6666654333221 12344677888999999999999999873 46999999999999999854
No 3
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=100.00 E-value=5.7e-80 Score=644.15 Aligned_cols=400 Identities=23% Similarity=0.392 Sum_probs=306.5
Q ss_pred EEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCC-----CceeeeCCCCCCCCCCCCCCCC-C
Q 012003 32 VFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDE-----PLLLTWNGVQHRKNSWQDGVLG-T 105 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~-----~~siH~HG~~~~~~~~~DGv~~-t 105 (473)
.+|+|+|++..++|||+.+.+|+|||++|||+||+++||+|+|+|+|+|++ +|+|||||++|+.++++||+++ |
T Consensus 5 ~~~~l~i~~~~~~pdg~~~~~~~~NG~~PGP~I~~~~GD~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 84 (495)
T 3t6v_A 5 PVTDLHIVNADIVPDGFVRPAVNAGGTFPGPVIAGNVGDNFQIVTFNQLIECSMLVDTSIHWHGEFQKGTNWADGPAFIT 84 (495)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTSSSCCEEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred CeEEEEEEEEEEcCCCceEEEEEECCcccCCeEEEECCcEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 479999999999999999999999999999999999999999999999985 7999999999999999999998 9
Q ss_pred CcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCC-CCCCCCCCCceEEEEeeceecchHHHHHhh
Q 012003 106 NCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVI-PLPFAVPDGDITIFISDWYTKSHKKLRKDV 184 (473)
Q Consensus 106 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 184 (473)
||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. ..+|+..++|++|+++||+++....+
T Consensus 85 q~pI~PG~sftY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~---- 160 (495)
T 3t6v_A 85 QCPIIVGNSFSYNFNVPGMAGTYWYHSHLTTQYCDGLRGPFVVYDPNDPDANLYDVDDDTTIITLADWYHVLAKEM---- 160 (495)
T ss_dssp BCCBCTTCEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCGGGS----
T ss_pred cCCCCCCCeEEEEEEeCCCCceeeeeccchhHHhcCceEEEEEcCccccccccCCCCCceeEEEEecccCCchhhh----
Confidence 9999999999999999778999999999999999999999999987542 12343445678999999999865432
Q ss_pred hCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeee
Q 012003 185 ENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN 264 (473)
Q Consensus 185 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 264 (473)
.+.....+++++|||++++.|.. .....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..
T Consensus 161 -~~~~p~~~d~~liNG~g~~~~~~----~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~via~DG~~~~P~~ 235 (495)
T 3t6v_A 161 -GAGGAITADSTLIDGLGRTHVNV----AAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTIIETDGVDSQELT 235 (495)
T ss_dssp -CSSSCCCCSEEEETTBCCBSSSC----CCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEE
T ss_pred -ccCCCCCCcEEEECCcCcCCCCc----ccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEeCCcccCCEE
Confidence 12223478999999998766522 1234589999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 012003 265 YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (473)
Q Consensus 265 ~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 344 (473)
++++.|+|||||||+|++++++| +|||++.+...+.. .......|+|+|+++.... +....+. .......
T Consensus 236 ~~~l~i~pGqR~dvlv~~~~~~g-~y~i~a~~~~~~~~-~~~~~~~ail~Y~~~~~~~--p~~~~~~-----~~~~~~~- 305 (495)
T 3t6v_A 236 VDEIQIFAAQRYSFVLNANQPVG-NYWIRANPNSGGEG-FDGGINSAILRYDGATTAD--PVTVAST-----VHTKCLI- 305 (495)
T ss_dssp ESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSSCS-CGGGTTEEEEEETTSCSSC--CCCCCCS-----SCSSBCC-
T ss_pred eeeEEEcCceEEEEEEECCCCCc-eEEEEEecccCccc-cCCCceEEEEEECCCCCCC--CCCCCCC-----CCccccc-
Confidence 99999999999999999998778 99999987543321 1123457999998764221 1110000 0000000
Q ss_pred cccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCC
Q 012003 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLM 424 (473)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~ 424 (473)
+.+|.+......|... ....+|+++.+... .++ ..|+|||++|..|+.|+|++... +.+.. .+
T Consensus 306 -~~~L~p~~~~~~p~~~---~~~~~d~~~~l~~~----~~~-~~w~iNg~s~~~~~~P~L~~~~~---g~~~~--~~--- 368 (495)
T 3t6v_A 306 -ETDLHPLSRNGVPGNP---HQGGADCNLNLSLG----FAC-GNFVINGVSFTPPTVPVLLQICS---GANTA--AD--- 368 (495)
T ss_dssp -GGGCCBSSCCCCSSCS---STTCSSEEEECCEE----EET-TEEEETTBCCCCCSSCHHHHHHT---TCCSS--TT---
T ss_pred -cccccccccccCCCcc---CCCCCcEEEEEEEE----ecC-cEEEEcCEecCCCCCcchhhhhc---CCcCc--cc---
Confidence 1122222111111100 01134555555432 122 27999999999999999877642 22210 11
Q ss_pred CCCCccceEEEeecCCcEEEEEEe-cCCCCCCceeecCCccEEEeec
Q 012003 425 SRAPKVDTSLINGTYKGFMEIIFQ-NNDTTVQSYHMDGYAFFVVGWQ 470 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~g~~Veivl~-N~~~~~HP~HLHGh~F~Vl~~g 470 (473)
......++.++.|++|||+|+ |.....||||||||+||||+++
T Consensus 369 ---~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh~F~vl~~~ 412 (495)
T 3t6v_A 369 ---LLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGHDFAVSESA 412 (495)
T ss_dssp ---SSSTTSEEEECTTCEEEEEEECCSSSCCCEEEETTCCEEEEECT
T ss_pred ---ccCCcceEEecCCCEEEEEEccCCCCCCcceeecCCcEEEEecC
Confidence 111345789999999999998 6778899999999999999863
No 4
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=100.00 E-value=7.9e-80 Score=643.09 Aligned_cols=397 Identities=26% Similarity=0.428 Sum_probs=306.0
Q ss_pred EEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCC-----CceeeeCCCCCCCCCCCCCCCC-C
Q 012003 32 VFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDE-----PLLLTWNGVQHRKNSWQDGVLG-T 105 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~-----~~siH~HG~~~~~~~~~DGv~~-t 105 (473)
.+|+|+|++..+++||+.+.+|+|||++|||+||+++||+|+|+|+|+|++ +|+|||||++|+.++++||+++ |
T Consensus 4 ~~~~l~v~~~~~~pdG~~~~~~~~NG~~PGP~I~~~~GD~v~V~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DGv~~vt 83 (499)
T 3pxl_A 4 PVADLTITDAAVSPDGFSRQAVVVNGVTPGPLVAGNIGDRFQLNVIDNLTNHTMLKSTSIHWHGFFQHGTNWADGPAFIN 83 (499)
T ss_dssp SEEEEEEEEEEECTTSCCEEEEEETTBSSCCCEEEETTCEEEEEEEECCCCGGGCSCBCEEEETCCCTTCGGGSCCBTTT
T ss_pred ceEEEEEEEEEEcCCCcEEEEEEECCcccCCeEEEeCCCEEEEEEEECCCCccCCCceEEEeCCcccCCCccccCCCccc
Confidence 479999999999999999999999999999999999999999999999985 7999999999999999999998 9
Q ss_pred CcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCC-CCCCCCCCCceEEEEeeceecchHHHHHhh
Q 012003 106 NCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVI-PLPFAVPDGDITIFISDWYTKSHKKLRKDV 184 (473)
Q Consensus 106 q~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 184 (473)
||||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. ..+|+..++|++|+++||+++....
T Consensus 84 q~pI~PG~s~tY~f~~~~~~GT~wYHsH~~~q~~~GL~G~lIV~~~~~~~~~~~~~d~~~~~l~l~Dw~~~~~~~----- 158 (499)
T 3pxl_A 84 QCPISPGHSFLYDFQVPDQAGTFWYHSHLSTQYCDGLRGPFVVYDPNDPHASRYDVDNDDTVITLADWYHTAAKL----- 158 (499)
T ss_dssp BCCBCTTCEEEEEEECSSCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCTTT-----
T ss_pred cCCCCCCCeEEEEEEcCCCCceeeeeccchhHHhccceeEEEEcCCcccccccCCCCCceEEEEEEcccCCcccc-----
Confidence 9999999999999999778999999999999999999999999986542 1234344567899999999975432
Q ss_pred hCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeee
Q 012003 185 ENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQN 264 (473)
Q Consensus 185 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~ 264 (473)
.+.....+++++|||++++.|.. ....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..
T Consensus 159 -~~~~p~~~d~~liNG~~~~~~~~-----~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~via~DG~~~~P~~ 232 (499)
T 3pxl_A 159 -GPRFPGGADATLINGKGRAPSDS-----VAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTIIEVDSVNSQPLE 232 (499)
T ss_dssp -SCSSCSSCSEEEETTBCCCTTCT-----TCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEEEE
T ss_pred -ccCCCCCCcEEEECCCCcCCCCC-----CCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEEEEECCcccCceE
Confidence 12223478999999998876522 234589999999999999999999999999999999999999999999999
Q ss_pred eeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccc
Q 012003 265 YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARS 344 (473)
Q Consensus 265 ~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~ 344 (473)
++++.|+|||||||+|++++++| +|||++.+...+.. .......|+|+|+++....+. .+..+. .. .+.
T Consensus 233 ~~~l~i~pGqR~dvlv~~~~~~g-~y~i~a~~~~~~~~-~~~~~~~ail~Y~~~~~~~p~-~~~~~~---~~-~~~---- 301 (499)
T 3pxl_A 233 VDSIQIFAAQRYSFVLDANQAVD-NYWIRANPNFGNVG-FDGGINSAILRYDGAPAVEPT-TNQTTS---VK-PLN---- 301 (499)
T ss_dssp ESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSSCS-CGGGTTEEEEEETTSCSSCCC-CCCCCC---SS-BCC----
T ss_pred eeeEEECCCcEEEEEEECCCCCc-eEEEEEecccCccc-cCCCceEEEEEeCCCCCCCCC-CCCCCC---Cc-ccc----
Confidence 99999999999999999998778 99999987543321 112345799999876421110 011010 00 011
Q ss_pred cccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCC
Q 012003 345 IRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLM 424 (473)
Q Consensus 345 ~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~ 424 (473)
+.+|.+....+.|... ....+|+++.+... .++ ..|+|||++|..|+.|+|++... +.+. ..+
T Consensus 302 -~~~L~p~~~~~~p~~~---~~~~~d~~~~l~~~----~~~-~~w~iNg~s~~~~~~P~L~~~~~---g~~~--~~~--- 364 (499)
T 3pxl_A 302 -EVDLHPLVSTPVPGAP---SSGGVDKAINMAFN----FNG-SNFFINGASFVPPTVPVLLQILS---GAQT--AQD--- 364 (499)
T ss_dssp -GGGCCBSSCCCCSSCS---STTCSSEEEECCEE----ECS-SCEEETTBCCCCCSSCHHHHHHT---TCCS--TTT---
T ss_pred -cccccccccccCCCcc---cCCCCcEEEEEEEE----ecC-cEEEEcCEecCCCCCchhhhhhc---CCcc--ccc---
Confidence 1122222211112100 01134566655442 222 27999999999999999877642 2221 001
Q ss_pred CCCCccceEEEeecCCcEEEEEEe---cCCCCCCceeecCCccEEEeec
Q 012003 425 SRAPKVDTSLINGTYKGFMEIIFQ---NNDTTVQSYHMDGYAFFVVGWQ 470 (473)
Q Consensus 425 ~~~~~~~~~~~~~~~g~~Veivl~---N~~~~~HP~HLHGh~F~Vl~~g 470 (473)
......++.++.|++|||+|+ |...+.||||||||+||||+++
T Consensus 365 ---~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh~F~Vl~~~ 410 (499)
T 3pxl_A 365 ---LLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGHTFAVVRSA 410 (499)
T ss_dssp ---SSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTCCEEEEECT
T ss_pred ---cCCCceeEEecCCCEEEEEEecCcccCCCCccceecCCcEEEEecc
Confidence 111345789999999999999 6667899999999999999863
No 5
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=100.00 E-value=3.1e-79 Score=645.81 Aligned_cols=398 Identities=22% Similarity=0.325 Sum_probs=313.0
Q ss_pred CeEEEEEEEEEEEecCCC-ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-CC
Q 012003 30 PYVFYDWTISYVTASPLG-DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-TN 106 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~dG-~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-tq 106 (473)
++|+|+|+|++..+++|| +.+++|+|||++|||+|++++||+|+|+|+|+|+ ++|+|||||+++..++++||+++ ||
T Consensus 1 ~~~~~~~~v~~~~~~pdG~~~~~~~~~Ng~~PGP~i~~~~Gd~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~~vtq 80 (534)
T 1zpu_A 1 ETHTFNWTTGWDYRNVDGLKSRPVITCNGQFPWPDITVNKGDRVQIYLTNGMNNTNTSMHFHGLFQNGTASMDGVPFLTQ 80 (534)
T ss_dssp CEEEEEEEEEEEEECSSSSCCEEEEEETTBSSCCCEEEETTCEEEEEEECCCSSCCBCCEEETCCCTTCGGGSCCBTTTB
T ss_pred CEEEEEEEEEEEEecCCCCceEEEEEECCccCCccEEEECCCEEEEEEEeCCCCCCeeEEcCCcccCCCCcccCCCcccc
Confidence 378999999999999999 7999999999999999999999999999999999 99999999999998899999998 99
Q ss_pred cccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHh-hh
Q 012003 107 CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKD-VE 185 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~-~~ 185 (473)
|||+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.. ++ .+|+|++|+|+||+++...++... ++
T Consensus 81 ~pI~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~---p~-~~d~e~~l~l~Dw~~~~~~~~~~~~~~ 156 (534)
T 1zpu_A 81 CPIAPGSTMLYNFTVDYNVGTYWYHSHTDGQYEDGMKGLFIIKDDSF---PY-DYDEELSLSLSEWYHDLVTDLTKSFMS 156 (534)
T ss_dssp CCBCTTCEEEEEEECSSCCEEEEEECCSSSGGGGTCEEEEEEECTTC---CS-CCSEEEEEEEEEECSSCHHHHHHHHSS
T ss_pred CCcCCCCeEEEEEEeCccceeEEEEEcCcccccCcceeeEEeCCCCC---CC-CCcceEEEEeeccccCCHHHHHHHHhc
Confidence 99999999999999976899999999999999999999999999753 22 448999999999999987765432 22
Q ss_pred ---CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeee
Q 012003 186 ---NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ 262 (473)
Q Consensus 186 ---~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p 262 (473)
..+..+.++.+||||+.. +.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|
T Consensus 157 ~~~~~g~~~~~d~~liNG~~~--------------~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~~P 222 (534)
T 1zpu_A 157 VYNPTGAEPIPQNLIVNNTMN--------------LTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTVVEIDGITTEK 222 (534)
T ss_dssp TTCTTCCCCCCSEEEETTBSS--------------CEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEEEE
T ss_pred cccCCCCCCCCceEEECCCCc--------------eEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEEEeccCcCccc
Confidence 123346789999999985 889999999999999999999999999999999999999999999
Q ss_pred eeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCC---ccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccc
Q 012003 263 QNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNS---SEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSM 339 (473)
Q Consensus 263 ~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~---~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~ 339 (473)
..++++.|+|||||||+|++++.++++|||++.....+. +........|+|+|.++...+ .+.... .....+
T Consensus 223 ~~~~~l~l~~gqR~dvlv~~~~~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p---~~~~~~--~~~~~~ 297 (534)
T 1zpu_A 223 NVTDMLYITVAQRYTVLVHTKNDTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALP---TQNYVD--SIDNFL 297 (534)
T ss_dssp EEESCEEECTTCEEEEEEECCSCSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBC---CCCCCS--CSSCSC
T ss_pred cEeceEEECccceEEEEEEcCCCCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCC---CCCccc--cccccc
Confidence 999999999999999999998654339999997653211 112345678999998754211 110000 000001
Q ss_pred ccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCC
Q 012003 340 NQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDF 419 (473)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~ 419 (473)
+. ..+.+....+.+ ..+++++.+........++...|+|||++|..|+.|+|++.+. .+.+.
T Consensus 298 ~~-----~~l~p~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~~~~iNg~s~~~~~~P~L~~~~~--~~~~~--- 359 (534)
T 1zpu_A 298 DD-----FYLQPYEKEAIY--------GEPDHVITVDVVMDNLKNGVNYAFFNNITYTAPKVPTLMTVLS--SGDQA--- 359 (534)
T ss_dssp CG-----GGCCBSSCCCCC--------CSCSEEEEEEEEEEECTTSCEEEEETTBCCCCCSSCHHHHHTT--SGGGT---
T ss_pred cc-----ccceeCCCCCCC--------CCCCeEEEEEEEeeccCCceeEEEECCCcccCCCCCceeeecc--cCccc---
Confidence 11 112111111111 2456667666543212356678999999999999999876642 12211
Q ss_pred CCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecC
Q 012003 420 PYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQF 471 (473)
Q Consensus 420 ~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~ 471 (473)
..+. ..+.+++++.++.|++|||+|+|.+.+.||||||||+||||++|.
T Consensus 360 -~~~~--~~~~~~~~~~~~~g~~v~ivi~N~~~~~HP~HLHGh~F~Vl~~~~ 408 (534)
T 1zpu_A 360 -NNSE--IYGSNTHTFILEKDEIVEIVLNNQDTGTHPFHLHGHAFQTIQRDR 408 (534)
T ss_dssp -TCGG--GGCSSSCEEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEECC
T ss_pred -CCCc--ccCCCceEEEeCCCCEEEEEEeCCCCCCCCeEecCCceEEEeecC
Confidence 0111 011235678899999999999999999999999999999999975
No 6
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=100.00 E-value=8.4e-79 Score=641.65 Aligned_cols=406 Identities=21% Similarity=0.326 Sum_probs=306.7
Q ss_pred CCCeEEEEEEEEEEEecCCCc-eEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-----CCceeeeCCCCCCCCCCCCC
Q 012003 28 GDPYVFYDWTISYVTASPLGD-KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-----EPLLLTWNGVQHRKNSWQDG 101 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~dG~-~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-----~~~siH~HG~~~~~~~~~DG 101 (473)
++...+|+|++++..+++||+ .+.+|+|||++|||+||+++||+|+|+|+|+|+ ++|+|||||+++.+++++||
T Consensus 20 ~~~~~~~~l~i~~~~~~~dg~~~~~~~~~NG~~PGP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHGl~~~~~~~~DG 99 (521)
T 1v10_A 20 LAATVALDLHILNANLDPDGTGARSAVTAEGTTIAPLITGNIDDRFQINVIDQLTDANMRRATSIHWHGFFQAGTTEMDG 99 (521)
T ss_dssp --CCSEEEEEEEEEEECTTSSCCEEEEEESSSSSCCCEEEETTCEEEEEEEECCCCTTSCCCBCEEEETCCCTTCGGGSC
T ss_pred cccCceEEEEEEEEEEcCCCcceEEEEEECCccCCCcEEEeCCCEEEEEEEECCCCccCCCCceEecCCeeccCCCccCC
Confidence 344568999999999999999 999999999999999999999999999999999 99999999999988999999
Q ss_pred CCC-CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCC-CCCCCCCCCceEEEEeeceecchHH
Q 012003 102 VLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVI-PLPFAVPDGDITIFISDWYTKSHKK 179 (473)
Q Consensus 102 v~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~l~d~~~~~~~~ 179 (473)
+++ |||+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. +.+|+..++|++|+|+||+++...+
T Consensus 100 v~~vtq~~I~PG~s~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~D~~~~~~~~ 179 (521)
T 1v10_A 100 PAFVNQCPIIPNESFVYDFVVPGQAGTYWYHSHLSTQYCDGLRGAFVVYDPNDPHLSLYDVDDASTVITIADWYHSLSTV 179 (521)
T ss_dssp CBTTTBCCBCTTEEEEEEEECTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSGGGEEEEEEECSSCCC-
T ss_pred CcceeeCCcCCCCeEEEEEecCCCCccEEEEeccCCchhcCceEEEEEcCCcccccccCCCCCceeEEEEcccccCCHHH
Confidence 998 99999999999999997678999999999999999999999999987532 2234333479999999999987665
Q ss_pred HHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCce
Q 012003 180 LRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSY 259 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~ 259 (473)
+.. ..+...+.++.++|||+..+.|.. .....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+
T Consensus 180 ~~~--~~~~~~~~~d~~liNG~~~~~~~~----~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~ 253 (521)
T 1v10_A 180 LFP--NPNKAPPAPDTTLINGLGRNSANP----SAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTVIEVDGVS 253 (521)
T ss_dssp --------CCCSCCSEEEETTBCCCSSCG----GGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEE
T ss_pred Hhh--ccCCCCCCCCEEEECCcccCCCCC----CCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEEEecCCcc
Confidence 432 122334668999999999866631 11335899999999999999999999999999999999999999999
Q ss_pred eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccc
Q 012003 260 TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSM 339 (473)
Q Consensus 260 ~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~ 339 (473)
++|..++++.|+|||||||+|++++++| +|||++.....+.. .......|+|+|.++....+...+.... .+
T Consensus 254 ~~p~~~~~l~l~pgqR~dvlv~~~~~~g-~y~i~~~~~~~~~~-~~~~~~~ail~y~~~~~~~p~~~~~~~~------~~ 325 (521)
T 1v10_A 254 HQPLTVDSLTIFAGQRYSVVVEANQAVG-NYWIRANPSNGRNG-FTGGINSAIFRYQGAAVAEPTTSQNSGT------AL 325 (521)
T ss_dssp EEEEEESBEEECTTCEEEEEEECCSCSS-EEEEEEEESSSSCS-CGGGTTEEEEEETTCCSCCCCCCCCCSC------BC
T ss_pred ccceeeeeEEEcccceEEEEEEcCCCCC-ceeeeecccccccc-CCCCceeEEEEECCCCCCCCCCCCCccc------cc
Confidence 9999999999999999999999998778 99999987643221 1112346999998764321110000000 01
Q ss_pred ccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCe-EEEEecceeccCCCCchhhhhhcCCCCccccC
Q 012003 340 NQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGK-WRTTLNGISYLPPSTPLMLAQQFNIPGAYKLD 418 (473)
Q Consensus 340 ~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~-~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~ 418 (473)
+. .++.+....+.|.... ....++++.+... .++. ..|+|||++|..+..|+|++... +.++.
T Consensus 326 ~~-----~~l~p~~~~~~p~~~~---~~~~~~~~~l~~~----~~~~~~~~~iNg~~~~~~~~P~l~~~~~---g~~~~- 389 (521)
T 1v10_A 326 NE-----ANLIPLINPGAPGNPV---PGGADINLNLRIG----RNATTADFTINGAPFIPPTVPVLLQILS---GVTNP- 389 (521)
T ss_dssp CG-----GGCCBSSCCCCSSCSS---TTCSSEEEECCEE----CCSSSSCCEESSCCCCCCSSCHHHHHHH---TCCCG-
T ss_pred ch-----hhcccCCcccCCCccc---CCcceEEEEEEEe----cCCceeEEEECCCcccCCCCchhhhhhc---CCccc-
Confidence 10 1122211111221100 0123444444321 2232 47999999999888898876542 11110
Q ss_pred CCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecCC
Q 012003 419 FPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 419 ~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
...+.+++++.++.|++|||+++| .+.||||||||+||||++|.+
T Consensus 390 -------~~~~~~~~~~~v~~g~~vei~l~N--~~~HP~HLHGh~F~Vl~~~~~ 434 (521)
T 1v10_A 390 -------NDLLPGGAVISLPANQVIEISIPG--GGNHPFHLHGHNFDVVRTPGS 434 (521)
T ss_dssp -------GGSSSTTTEEEECTTCEEEEEEEC--CBSCEEEESSCCEEEEECTTC
T ss_pred -------ccCCCCceEEEecCCCEEEEEEcC--CCCCCEEEccceEEEEecCCC
Confidence 011224577899999999999999 789999999999999999754
No 7
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=100.00 E-value=3.3e-76 Score=619.74 Aligned_cols=397 Identities=26% Similarity=0.437 Sum_probs=303.0
Q ss_pred EEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-----CCceeeeCCCCCCCCCCCCCCCC-CC
Q 012003 33 FYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-----EPLLLTWNGVQHRKNSWQDGVLG-TN 106 (473)
Q Consensus 33 ~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-----~~~siH~HG~~~~~~~~~DGv~~-tq 106 (473)
.|+|++++..+++||+.+++|+|||++ ||+|++++||+|+|+|+|+|+ ++|+|||||+++.+++++||+++ ||
T Consensus 6 ~~~l~i~~~~~~~~g~~~~~~~~NG~~-GP~i~~~~Gd~v~v~v~N~l~~~~~~~~tsiHwHG~~~~~~~~~DGv~~vtq 84 (503)
T 1hfu_A 6 VDTMTLTNANVSPDGFTRAGILVNGVH-GPLIRGGKNDNFELNVVNDLDNPTMLRPTSIHWHGLFQRGTNWADGADGVNQ 84 (503)
T ss_dssp EEEEEEEEEEECTTSCCEEEEEETTBS-SCEEEEETTCCEEEEEEECCCCTTSCCSBCEEEETCCCTTCGGGSCCBTTTB
T ss_pred eEEEEEEEEEECCCCeEEEEEEECCcc-CCcEEEeCCCEEEEEEEeCCCCccCCCcccEeccceeccCCCccCCCccccc
Confidence 599999999999999999999999999 999999999999999999999 99999999999988899999998 99
Q ss_pred cccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCC-CCCCCCCCCceEEEEeeceecchHHHHHhhh
Q 012003 107 CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVI-PLPFAVPDGDITIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~-~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 185 (473)
|+|+||++|+|+|++++++||||||||.+.|+.+||+|+|||+++.+. +.+|+..++|++|+|+||+++...++..
T Consensus 85 ~~I~PG~~~~Y~f~~~~~~GT~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~d~~e~~l~l~Dw~~~~~~~~~~--- 161 (503)
T 1hfu_A 85 CPISPGHAFLYKFTPAGHAGTFWYHSHFGTQYCDGLRGPMVIYDDNDPHAALYDEDDENTIITLADWYHIPAPSIQG--- 161 (503)
T ss_dssp CCBCTTCEEEEEECCTTCCEEEEEEECSTTGGGGTCEEEEEEECTTCTTGGGCSBCSTTSEEEEEEECSSCGGGCC----
T ss_pred CCcCCCCeEEEEEEeCCCCccEEEEecchhhhhCcceeeEEEcCCCCCcccCCCCCCceEEEEEcccccCChHHhcC---
Confidence 999999999999997678999999999999999999999999987532 2234333479999999999987654321
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeee
Q 012003 186 NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNY 265 (473)
Q Consensus 186 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~ 265 (473)
.+.++.++|||+..+.|.. ....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.+++|..+
T Consensus 162 ----~~~~d~~liNG~~~~~~~~-----~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG~~~~p~~~ 232 (503)
T 1hfu_A 162 ----AAQPDATLINGKGRYVGGP-----AAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTIIEVDGELTEPHTV 232 (503)
T ss_dssp ------CCSEEEETTBCCBTTCC-----CCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEEEEETTEEEEEEEE
T ss_pred ----CCCCCEEEECcccccCCCC-----CCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEEEeccCcccccccc
Confidence 1467999999999876632 2345899999999999999999999999999999999999999999999999
Q ss_pred eEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCc---cCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccc
Q 012003 266 TNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSS---EWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQA 342 (473)
Q Consensus 266 d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~---~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~ 342 (473)
+++.|+|||||||+|++++++| +|||++.....+.. ........|+|+|.++....+. .+..+. . ..++.
T Consensus 233 ~~l~l~pgeR~dvlv~~~~~~g-~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~-~~~~~~---~-~~l~~- 305 (503)
T 1hfu_A 233 DRLQIFTGQRYSFVLDANQPVD-NYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPT-TSANPN---P-AQLNE- 305 (503)
T ss_dssp SBEEECTTCEEEEEEECCSCSS-EEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCC-CCCCSS---C-CBCCG-
T ss_pred CeEEEcccceEEEEEEcCCCcc-ceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCC-CCCCCc---c-CCCcc-
Confidence 9999999999999999998778 99999976532211 0111234799999876432110 010111 0 01111
Q ss_pred cccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCC
Q 012003 343 RSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYK 422 (473)
Q Consensus 343 ~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~ 422 (473)
.++.+....+.|.... ....+.++.+... .++. .|+|||++|..+..|+|++... +.++.
T Consensus 306 ----~~l~p~~~~~~p~~~~---~~~~~~~~~l~~~----~~~~-~~~iNg~~~~~~~~P~l~~~~~---g~~~~----- 365 (503)
T 1hfu_A 306 ----ADLHALIDPAAPGIPT---PGAADVNLRFQLG----FSGG-RFTINGTAYESPSVPTLLQIMS---GAQSA----- 365 (503)
T ss_dssp ----GGCBBSSSCSCSSCSS---TTCSSEEEECCEE----EETT-EEEETTBCCCCCSSCHHHHHHT---TCCSG-----
T ss_pred ----ccccccCccCCCCccc---CCcceEEEEEEee----ccCc-eEEECCCccCCCCCcchhhhhc---CCccc-----
Confidence 1122111111121100 0123344433321 1222 7999999999888898876642 21110
Q ss_pred CCCCCCccceEEEeecCCcEEEEEEec-CCCCCCceeecCCccEEEeecCC
Q 012003 423 LMSRAPKVDTSLINGTYKGFMEIIFQN-NDTTVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 423 p~~~~~~~~~~~~~~~~g~~Veivl~N-~~~~~HP~HLHGh~F~Vl~~g~~ 472 (473)
...+.++.++.++.|++|||+++| ...+.||||||||+||||++|.+
T Consensus 366 ---~~~~~~~~~~~v~~g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~ 413 (503)
T 1hfu_A 366 ---NDLLPAGSVYELPRNQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGS 413 (503)
T ss_dssp ---GGSSSTTSEEEECSSCEEEEEEECCSTTCCCEEEETTCCEEEEECTTC
T ss_pred ---ccCCCCceEEEccCCCEEEEEEECCCCCCCCCEEEecceEEEEecCCC
Confidence 011235678899999999999995 55789999999999999999754
No 8
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=100.00 E-value=1.5e-74 Score=613.74 Aligned_cols=402 Identities=21% Similarity=0.332 Sum_probs=306.0
Q ss_pred CCCeEEEEEEEEEEE--ecCCCce-EEEEEEcCCCCCceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCC
Q 012003 28 GDPYVFYDWTISYVT--ASPLGDK-QQVIGINGQFPGPILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVL 103 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~--~~~dG~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~ 103 (473)
.+.+++|+|++++.+ +.+||+. +.+|+|||++|||+|++++||+|+|+|+|+| +++++|||||+++..++++||++
T Consensus 30 ~~~~~~~~l~~~~~~~~~~~~g~~~~~~~~~Ng~~PGP~i~~~~GD~v~v~v~N~l~~~~tsiHwHG~~~~~~~~~DG~~ 109 (559)
T 2q9o_A 30 TGVTQSYVFNLTEVDNWMGPDGVVKEKVMLINGNIMGPNIVANWGDTVEVTVINNLVTNGTSIHWHGIXQKDTNLHDGAN 109 (559)
T ss_dssp CCCEEEEEEEEEEEEEEECTTSCEEEEEEEETTBSSCCCEEEETTCEEEEEEEEECSSCCBCEEEETCCCTTCGGGSCCB
T ss_pred CCeEEEEEEEEEEeEeeECCCCccceEEEEECCcccCCcEEEeCCCEEEEEEEeCCCCCCceEEcCCCccCCCCCcCCCC
Confidence 455799999999999 8999999 9999999999999999999999999999999 68999999999998889999999
Q ss_pred C-CCcccCC-CCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCce-EEEEeeceecchHHH
Q 012003 104 G-TNCPIPA-GWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDI-TIFISDWYTKSHKKL 180 (473)
Q Consensus 104 ~-tq~~I~P-G~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~-~l~l~d~~~~~~~~~ 180 (473)
+ |||+|+| |++|+|+|+++ ++||||||||.+.|+.+||+|+|||+++.. .+ +|+|. +|+|+||+++...++
T Consensus 110 ~~tq~~I~P~G~~~~Y~f~~~-q~GT~wYH~H~~~q~~~Gl~G~liV~~~~~--~~---~d~d~~~l~l~Dw~~~~~~~~ 183 (559)
T 2q9o_A 110 GVTECPIPPKGGQRTYRWRAR-QYGTSWYHSHFSAQYGNGVVGTIQINGPAS--LP---YDIDLGVFPITDYYYRAADDL 183 (559)
T ss_dssp TTTBCCBCTTTEEEEEEEECC-SCEEEEEEECSTTGGGGTCEEEEEEECCCS--SC---CSEEEEEEEEEEECSSCHHHH
T ss_pred ccccCccCCCCCeEEEEEECC-CCEEEEEEEcccchhcCCceEEEEecCCCc--CC---CcccceEEEEeccccCCHHHH
Confidence 8 9999999 99999999995 899999999999999999999999998754 23 37887 999999999987765
Q ss_pred HHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee
Q 012003 181 RKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT 260 (473)
Q Consensus 181 ~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~ 260 (473)
..... ....+.++.++|||+..+.|.. ....+.+++++||+|||||||+|..+.+.|+|+||+|+|||+||.++
T Consensus 184 ~~~~~-~~~~~~~d~~liNG~~~~~~~~-----~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~vi~~DG~~~ 257 (559)
T 2q9o_A 184 VHFTQ-NNAPPFSDNVLINGTAVNPNTG-----EGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTVIAADMVPV 257 (559)
T ss_dssp HHHHT-TSCCCCBSEEEETTBCBCTTTC-----CBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEEEEETTEEE
T ss_pred hhhhh-cCCCCccceeEECCccccCcCC-----CCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEEEecCCccc
Confidence 43222 2334668999999999865521 23458899999999999999999999999999999999999999999
Q ss_pred eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee--cccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcc-c
Q 012003 261 VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP--RFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTY-F 337 (473)
Q Consensus 261 ~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~--~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~-~ 337 (473)
+|..++++.|+|||||||+|++++++| +|||++.. ...+.. .......|+|+|.++... .|..+.....+ .
T Consensus 258 ~p~~~~~l~l~pgeR~dvlv~~~~~~g-~y~i~a~~~~~~~~~~-~~~~~~~ail~y~~~~~~----~P~~~~~~~~~~~ 331 (559)
T 2q9o_A 258 NAMTVDSLFLAVGQRYDVVIDASRAPD-NYWFNVTFGGQAACGG-SLNPHPAAIFHYAGAPGG----LPTDEGTPPVDHQ 331 (559)
T ss_dssp EEEEESCEEECTTCEEEEEEECCSCSS-EEEEEEECCGGGTTCC-BSSSCCEEEEEETTSCCS----CCCCCCCCCCCCT
T ss_pred CceEeCeEEEccEEEEEEEEECCCCCC-cEEEEEEeccccccCC-CCCCceeEEEEECCCCCC----CCCCCCCcCCCcc
Confidence 999999999999999999999998778 99999987 322211 123456899999876431 11111000000 0
Q ss_pred ccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccC-CCCchhhhhhcCCCCccc
Q 012003 338 SMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLP-PSTPLMLAQQFNIPGAYK 416 (473)
Q Consensus 338 ~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~-p~~P~l~~~~~~~~~~~~ 416 (473)
.++. ..+.+....+.|.... ....+.++.+.... ...+...|+|||++|.. +..|+|.+...+..
T Consensus 332 ~~~~-----~~l~p~~~~~~p~~~~---~~~~~~~~~~~~~~--~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~---- 397 (559)
T 2q9o_A 332 CLDT-----LDVRPVVPRSVPVNSF---VKRPDNTLPVALDL--TGTPLFVWKVNGSDINVDWGKPIIDYILTGNT---- 397 (559)
T ss_dssp TCCC-----SCCCBSSCCBCCCTTC---CCCGGGEEEEEEEC--SSSSSCEEEETTBCCCCCTTSCHHHHHHHTCC----
T ss_pred cccc-----cccccCCCCCCCCccc---ccceeEEEEEEeec--CCCceEEEEECCEecccCCCCCcHhHhhcCCc----
Confidence 1110 1111111111121100 01122334443211 12356789999999964 57898765542110
Q ss_pred cCCCCCCCCCCCccceEEEeecC-CcEEEEEEecCC----CCCCceeecCCccEEEeecC
Q 012003 417 LDFPYKLMSRAPKVDTSLINGTY-KGFMEIIFQNND----TTVQSYHMDGYAFFVVGWQF 471 (473)
Q Consensus 417 ~~~~~~p~~~~~~~~~~~~~~~~-g~~Veivl~N~~----~~~HP~HLHGh~F~Vl~~g~ 471 (473)
++ | .+.+++.++. ++|++|+++|.+ .+.||||||||+||||++|.
T Consensus 398 -~~---~------~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~HLHGh~F~Vl~~g~ 447 (559)
T 2q9o_A 398 -SY---P------VSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPMHLHGHDFLVLGRSP 447 (559)
T ss_dssp -CC---C------GGGCEEEECCSSCEEEEEEEECTTSSCCCCEEEEESSSCEEEEEESC
T ss_pred -cC---C------CCceEEEcCCCCEEEEEEEeCCCccccCCCCcEEECCCceEEEeccc
Confidence 01 1 2456677765 678888999976 78999999999999999985
No 9
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=100.00 E-value=5.6e-70 Score=564.73 Aligned_cols=350 Identities=16% Similarity=0.175 Sum_probs=269.9
Q ss_pred CeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcc
Q 012003 30 PYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCP 108 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 108 (473)
.+++|+|++++.+.++ ||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++... +||++ ||+
T Consensus 17 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~~~--~DG~~--~~~ 92 (451)
T 2uxt_A 17 RGQPLFMTVQRAHWSFTPGTRASVWGINGRYLGPTIRVWKGDDVKLIYSNRLTENVSMTVAGLQVPGP--LMGGP--ARM 92 (451)
T ss_dssp SSCCEEEEEEECCGGGCSSSSSCCEEETTSSBCCEEEEETTCEEEEEEEECSSSCBCEEEETCCCCGG--GSCSG--GGC
T ss_pred CceEEEEEEEEEEEEcCCCceeEEEEECCcccCceEEEeCCCEEEEEEEECCCCCccEEECCccCCCC--CCCCC--cCc
Confidence 3578999999999988 899999999999999999999999999999999999999999999988654 99998 899
Q ss_pred cCCCCceEEEEEECCCccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCC--CCCCceEEEEeeceecchHHHHH
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRK 182 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~ 182 (473)
|+||++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.+...+++ ..++|++|+|+||+++.+.++..
T Consensus 93 i~PG~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~~p~~y~~~e~~l~l~D~~~~~~~~~~~ 172 (451)
T 2uxt_A 93 MSPNADWAPVLPIRQNAATLWYHANTPNRTAQQVYNGLAGMWLVEDEVSKSLPIPNHYGVDDFPVIIQDKRLDNFGTPEY 172 (451)
T ss_dssp BCTTCEECCEEECCSCSEEEEEEECCTTTHHHHHHTTCEEEEEEECHHHHHSSSCCCBTTTEEEEEEEEEEECTTSCEEC
T ss_pred CCCCCeEEEEEEcCCCCcceEEecCCCCchhhhHhhcceEEEEEecCcccccCCCccCCCceEEEEEEeeecCCCCceec
Confidence 99999999999996559999999997 7899999999999998754322222 24789999999999986544321
Q ss_pred hhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE-eCceeEEEeecCcee-
Q 012003 183 DVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSYT- 260 (473)
Q Consensus 183 ~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~~- 260 (473)
...+.....++.++|||+.. |.+++++| +|||||||+|..+.+.|+| |||+|+|||+||.++
T Consensus 173 -~~~~~~~~~~d~~liNG~~~--------------p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~vi~~DG~~~~ 236 (451)
T 2uxt_A 173 -NEPGSGGFVGDTLLVNGVQS--------------PYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHVISGDQGFLP 236 (451)
T ss_dssp -CCCSSSCCCCSEEEETTEES--------------CEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEEEECSSSEEE
T ss_pred -ccccCCCCcCCEEEECCccc--------------ceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEEEEeCCCccC
Confidence 11222345689999999996 88999999 9999999999999999999 899999999999987
Q ss_pred eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCc-------cCCccceEEEEEecCCCCCCCCCCCCCCCCC
Q 012003 261 VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSS-------EWNKVTGVAILHYSNSLGPASGPLPDPPNAY 333 (473)
Q Consensus 261 ~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~-------~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~ 333 (473)
+|..++++.|+|||||||+|++++ ++ +|||++........ ........++++|........ +....|.
T Consensus 237 ~P~~~~~l~l~pgeR~dvlv~~~~-~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~-~~~~~p~-- 311 (451)
T 2uxt_A 237 APVSVKQLSLAPGERREILVDMSN-GD-EVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPL-VTDSLPM-- 311 (451)
T ss_dssp EEEEESSEEECTTCEEEEEEECTT-CC-CEEEEC----------------CCCCSCCEEEEEEECSCCC-----CCCS--
T ss_pred CceEeceEEECceeEEEEEEEeCC-CC-EEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcC-ccccCcc--
Confidence 799999999999999999999995 56 99999866432110 001123457888875431110 0000110
Q ss_pred CcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCC
Q 012003 334 DTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPG 413 (473)
Q Consensus 334 ~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~ 413 (473)
.|......+. ....++++.+. + .|+|||++|..+ .|
T Consensus 312 --------------~L~~~~~~~~--------~~~~~~~~~l~--------~--~~~iNg~~f~~~-~~----------- 347 (451)
T 2uxt_A 312 --------------RLLPTEIMAG--------SPIRSRDISLG--------D--DPGINGQLWDVN-RI----------- 347 (451)
T ss_dssp --------------CSSSSCCCCC--------CCSEEEEEEEC--------S--SSSBTTBCCCTT-CC-----------
T ss_pred --------------ccCCCCCCCC--------CCcceEEEEEe--------e--EEEECCEeCCCC-CC-----------
Confidence 1111110000 12344555443 1 589999999532 11
Q ss_pred ccccCCCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeec
Q 012003 414 AYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQ 470 (473)
Q Consensus 414 ~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g 470 (473)
.+.++.|++|+|+|+|. +.||||||||+||||+++
T Consensus 348 --------------------~~~~~~G~~~~~~l~N~--~~HP~HLHGh~F~Vl~~~ 382 (451)
T 2uxt_A 348 --------------------DVTAQQGTWERWTVRAD--EPQAFHIEGVMFQIRNVN 382 (451)
T ss_dssp --------------------CEEEETTCEEEEEEEEE--EEEEEEETTCEEEEEEET
T ss_pred --------------------cEEcCCCCEEEEEEECC--CCcCeEECCceEEEEeeC
Confidence 14678999999999997 799999999999999983
No 10
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=100.00 E-value=1.6e-68 Score=553.00 Aligned_cols=351 Identities=21% Similarity=0.303 Sum_probs=276.3
Q ss_pred cCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC
Q 012003 27 GGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN 106 (473)
Q Consensus 27 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq 106 (473)
...++++|+|++++..+.+||+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||++
T Consensus 12 ~~~~~~~~~l~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~--- 86 (439)
T 2xu9_A 12 SQGGLLSLKLSATPTPLAIAGQRATLLTYGGSFPGPTLRVRPRDTVRLTLENRLPEPTNLHWHGLPIS--PKVDDPF--- 86 (439)
T ss_dssp CBTTEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEECTTCEEEEEEEECSSSCBCCEEETCCCC--TTTSCTT---
T ss_pred cCCCeEEEEEEEEEEEEEcCCceEEEEEECCcccCCEEEEeCCCEEEEEEEECCCCCcceEeCCCCCC--ccccCCc---
Confidence 34567899999999999999999999999999999999999999999999999999999999999874 5899987
Q ss_pred cccCCCCceEEEEEEC-CCccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH--
Q 012003 107 CPIPAGWNWTYQFQVK-DQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK-- 179 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~-~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~-- 179 (473)
++|+||++|+|+|+++ +++||||||||. +.|+.+||+|+|||+++.+.. +...+++|++|+++||+++....
T Consensus 87 ~~I~PG~~~~Y~f~~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~-~~~~~~~e~~l~l~D~~~~~~~~~~ 165 (439)
T 2xu9_A 87 LEIPPGESWTYEFTVPKELAGTFWYHPHLHGRVAPQLFAGLLGALVVESSLDAI-PELREAEEHLLVLKDLALQGGRPAP 165 (439)
T ss_dssp CCBCTTCEEEEEEECCSSCCEEEEEECCCTTSHHHHHHTTCCEEEEECCGGGGS-HHHHTSEEEEEEEEEECEETTEECC
T ss_pred ccCCCCCeEEEEEecCCCCCcceEeccCCCCchHHHHHhhCeEEEEEcCccccC-ccCCCCCcEEEEEEeeeeCCCCcCC
Confidence 5699999999999986 479999999996 579999999999999865321 11134789999999999975310
Q ss_pred --HHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecC
Q 012003 180 --LRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEG 257 (473)
Q Consensus 180 --~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG 257 (473)
....+ ....++.++|||+.. |.+++++| +|||||||+|..+.+.|+|+||+|+||++||
T Consensus 166 ~~~~~~~----~g~~~~~~~iNG~~~--------------p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~vi~~DG 226 (439)
T 2xu9_A 166 HTPMDWM----NGKEGDLVLVNGALR--------------PTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYLIAADG 226 (439)
T ss_dssp CCHHHHH----HCCCCSEEEETTEES--------------CEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEEEEETT
T ss_pred CCccccc----cCCCCCEEEECCccC--------------CcEEecCC-eEEEEEEecCCCceEEEEECCceEEEEecCC
Confidence 00000 113468999999986 88999999 9999999999999999999999999999999
Q ss_pred cee-eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCc--------------cCCccceEEEEEecCCCCCC
Q 012003 258 SYT-VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSS--------------EWNKVTGVAILHYSNSLGPA 322 (473)
Q Consensus 258 ~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~--------------~~~~~~~~ail~y~~~~~~~ 322 (473)
.++ +|..++++.|+|||||||+|++++ +| +|||++.....+.. ........++|+|.++..+
T Consensus 227 ~~~~~p~~~~~l~l~pgeR~dv~v~~~~-~G-~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~- 303 (439)
T 2xu9_A 227 GFLEEPLEVSELLLAPGERAEVLVRLRK-EG-RFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNPKP- 303 (439)
T ss_dssp EEEEEEEEESCEEECTTCEEEEEEECCS-SE-EEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSCCC-
T ss_pred CCCCCceEeceEEECCceeEEEEEEcCC-Cc-eEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCCcc-
Confidence 997 899999999999999999999997 78 89999865422110 0012356789999875421
Q ss_pred CCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCc
Q 012003 323 SGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTP 402 (473)
Q Consensus 323 ~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P 402 (473)
.++|... .+.. ++ +.+ ..++++.+.... .+ ..|+|||++|..+..+
T Consensus 304 -~~~p~~l---------~~~~----~l------~~~---------~~~r~~~l~~~~----~g-~~~~iNg~~~~~~~~~ 349 (439)
T 2xu9_A 304 -LPLPKAL---------SPFP----TL------PAP---------VVTRRLVLTEDM----MA-ARFFINGQVFDHRRVD 349 (439)
T ss_dssp -CCCCSCC---------CCCC----CC------CCC---------SEEEEEEEEEEG----GG-TEEEETTBCCCTTCCC
T ss_pred -ccCcccC---------CCcc----cC------CCC---------CcceEEEEEeec----cC-ceEeECCEECCCCCCc
Confidence 1222111 0000 00 011 123666665432 11 3799999999532111
Q ss_pred hhhhhhcCCCCccccCCCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecC
Q 012003 403 LMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQF 471 (473)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~ 471 (473)
+.++.|++++|+|+|.+.+.||||||||+||||+++-
T Consensus 350 --------------------------------~~~~~g~~~~~~~~N~~~~~HP~HLHG~~F~Vl~~~g 386 (439)
T 2xu9_A 350 --------------------------------LKGQAQTVEVWEVENQGDMDHPFHLHVHPFQVLSVGG 386 (439)
T ss_dssp --------------------------------EEECTTCEEEEEEEECSSSCEEEEESSCCBEEEEETT
T ss_pred --------------------------------eecCCCCEEEEEEEcCCCCCCCceeCCCcEEEEeeCC
Confidence 3678999999999999999999999999999999863
No 11
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=100.00 E-value=1.2e-67 Score=556.40 Aligned_cols=360 Identities=16% Similarity=0.190 Sum_probs=272.9
Q ss_pred eEEEEEEEEEEE--ecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcc
Q 012003 31 YVFYDWTISYVT--ASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCP 108 (473)
Q Consensus 31 ~~~~~l~~~~~~--~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 108 (473)
.++|+|++++.. +.+||..+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||++ ||+
T Consensus 36 ~~~~~l~~~~~~~~~~p~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~--~~~DG~~--~~~ 111 (534)
T 3abg_A 36 IWYYEVEIKPFTHQVYPDLGSADLVGYDGMSPGPTFQVPRGVETVVRFINNAEAPNSVHLHGSFSR--AAFDGWA--EDI 111 (534)
T ss_dssp CEEEEEEEECCEECCSTTTCCEECBEETSCSSEEEEEEETTCCEEEEEEECSSSCBCEEEETCCCC--TTTTTCS--SSC
T ss_pred eEEEEEEEEEEEEEecCCCCceeEEEECCcCcCceEEEeCCcEEEEEEEECCCCCceEEECCCcCC--CCCCCCC--CCC
Confidence 478999999654 6789999999999999999999999999999999999999999999999875 4699986 899
Q ss_pred cCCCCceEEEEEECCCccceeeccChh----hhhcCCeeeEEEEEcCCCCCCCCCC--CCCceEEEEeeceecchHHHHH
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSLD----FQRAAGGYGGIIINNRDVIPLPFAV--PDGDITIFISDWYTKSHKKLRK 182 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~~~~~--~~~e~~l~l~d~~~~~~~~~~~ 182 (473)
|+||++|+|+|++.+++||||||||.. .|+.+||+|+|||+++.+...+++. .++|++|+|+||+++.+.++..
T Consensus 112 i~PG~~~~Y~f~~~~~~GT~WYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~~lp~~~~~~d~~l~l~d~~~~~~g~~~~ 191 (534)
T 3abg_A 112 TEPGSFKDYYYPNRQSARTLWYHDHAMHITAENAYRGQAGLYMLTDPAEDALNLPSGYGEFDIPMILTSKQYTANGNLVT 191 (534)
T ss_dssp BSSCSCCCEEECCCSSSCEEEEEECCTTCHHHHHHTBCEEEEEEECTTTTTSCTTCCHHHHSCCEEEEEECBCSSSCBCC
T ss_pred CCCCCeEEEEEecCCcceeEEEecCccccchhhhhhcceEEEEEECCcccccCCCccCCcceEEEEEeeeeecCCCceec
Confidence 999999999999965579999999974 5889999999999998764444332 3678999999999876543321
Q ss_pred hhhCC-CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeC-------ceeEEEe
Q 012003 183 DVENG-VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQN-------HNLLLVE 254 (473)
Q Consensus 183 ~~~~~-~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~g-------h~~~via 254 (473)
. .+ .....+|.++|||+.. +.+++++ ++|||||||+|..+.+.|+|++ |+|+|||
T Consensus 192 ~--~~~~~~~~gd~~lvNG~~~--------------p~~~v~~-~~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~vIa 254 (534)
T 3abg_A 192 T--NGELNSFWGDVIHVNGQPW--------------PFKNVEP-RKYRFRFLDAAVSRSFGLYFADTDAIDTRLPFKVIA 254 (534)
T ss_dssp C--TTCSSCCCCSEEEETTEES--------------CBCBCCS-SEEEEEEEECCSSCCEEEEECCSSSTTCCCCEEEEE
T ss_pred c--CCCCccccCceeccCCccC--------------ceEEecC-cEEEEEEEecCCcceEEEEEecccCcCCCccEEEEE
Confidence 1 11 1234578999999986 7788988 5999999999999999999987 9999999
Q ss_pred ecCce-eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecc-cCCc-cCCccceEEEEEecCCCCCCCCCCCCCCC
Q 012003 255 TEGSY-TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRF-VNSS-EWNKVTGVAILHYSNSLGPASGPLPDPPN 331 (473)
Q Consensus 255 ~DG~~-~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~-~~~~-~~~~~~~~ail~y~~~~~~~~~~~p~~p~ 331 (473)
+||.+ .+|..++++.|+|||||||+|++++.+|++|||++.... .+.. ........++++|..+..+........|
T Consensus 255 ~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~P- 333 (534)
T 3abg_A 255 SDSGLLEHPADTSLLYISMAERYEVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPDTSVVP- 333 (534)
T ss_dssp ETTEEEEEEEEESCEEECTTCEEEEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSCCCCCC-
T ss_pred eCCCcccCceEeceEEECCccEEEEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCCCCCCc-
Confidence 99985 589999999999999999999999866757999985421 1111 0111244588998754321000000001
Q ss_pred CCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCC
Q 012003 332 AYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNI 411 (473)
Q Consensus 332 ~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~ 411 (473)
..+..... +.+. ...++++.+... + ..|+|||++|..+..|++
T Consensus 334 ---------------~~L~~~~~-p~~~-------~~~~~~~~~~~~-----~--~~w~iNG~~f~~~~~p~l------- 376 (534)
T 3abg_A 334 ---------------ANLRDVPF-PSPT-------TNTPRQFRFGRT-----G--PTWTINGVAFADVQNRLL------- 376 (534)
T ss_dssp ---------------CCCCCCSC-CCCC-------CCCCEEEECSCC-----C--STTCCCCBTTBCTTSCCC-------
T ss_pred ---------------cccccCCC-CCCc-------cccceEEEEecc-----C--ceeEECCcccCCCCCcce-------
Confidence 01111100 1111 124555554321 1 259999999976655543
Q ss_pred CCccccCCCCCCCCCCCccceEEEeecCCcEEEEEEecCCC-CCCceeecCCccEEEeecCC
Q 012003 412 PGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDT-TVQSYHMDGYAFFVVGWQFP 472 (473)
Q Consensus 412 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~-~~HP~HLHGh~F~Vl~~g~~ 472 (473)
..++.|++++|+|+|.+. +.||||||||+||||++|.|
T Consensus 377 -----------------------~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g 415 (534)
T 3abg_A 377 -----------------------ANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSG 415 (534)
T ss_dssp -----------------------CEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSC
T ss_pred -----------------------eeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCC
Confidence 246889999999999874 59999999999999999543
No 12
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=100.00 E-value=1.8e-66 Score=547.02 Aligned_cols=363 Identities=18% Similarity=0.217 Sum_probs=270.5
Q ss_pred eEEEEEEEEEEEec--CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCC----------------------Ccee
Q 012003 31 YVFYDWTISYVTAS--PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDE----------------------PLLL 86 (473)
Q Consensus 31 ~~~~~l~~~~~~~~--~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~----------------------~~si 86 (473)
.++|+|++++.... +++..+.+|+|||++|||+|++++||+|+|+|+|+|++ +|+|
T Consensus 25 ~~~~~l~~~~~~~~~~~~~~~~~~~~~NG~~PGPtI~~~~Gd~v~v~v~N~L~~~~~~~~~~t~~~~~~~~~~~~~~tsi 104 (513)
T 2wsd_A 25 KTYYEVTMEECTHQLHRDLPPTRLWGYNGLFPGPTIEVKRNENVYVKWMNNLPSTHFLPIDHTIHHSDSQHEEPEVKTVV 104 (513)
T ss_dssp CEEEEEEEEEEEECSSTTSCCEEEEEETTBSSCCBEEEETTCCEEEEEEECCCSSCSSCCCTTSCC-----CCCSCCBCE
T ss_pred ceEEEEEEEEeeeeeCCCCCCceEEEECCCccCceEEECCCCEEEEEEEeCCCccccCccccccccccccccCCCCCcEE
Confidence 45599999998754 45679999999999999999999999999999999975 8999
Q ss_pred eeCCCCCCCCCCCCCCCC---CCcccCCCCce---EEEEEECCCccceeeccChh----hhhcCCeeeEEEEEcCCCCCC
Q 012003 87 TWNGVQHRKNSWQDGVLG---TNCPIPAGWNW---TYQFQVKDQIGSFFYFPSLD----FQRAAGGYGGIIINNRDVIPL 156 (473)
Q Consensus 87 H~HG~~~~~~~~~DGv~~---tq~~I~PG~~~---~Y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~~ 156 (473)
||||+++. +++||++. +||+|+||++| +|+|++.+++||||||||.. .|+.+||+|+|||+++.+.+.
T Consensus 105 HwHGl~~~--~~~DG~p~~~i~~g~i~pG~~f~~~~Y~f~~~~~~GT~wYH~H~~~~t~~q~~~Gl~G~liV~~~~~~~~ 182 (513)
T 2wsd_A 105 HLHGGVTP--DDSDGYPEAWFSKDFEQTGPYFKREVYHYPNQQRGAILWYHDHAMALTRLNVYAGLVGAYIIHDPKEKRL 182 (513)
T ss_dssp EEETCCCC--GGGSCCTTSCBCGGGSSBCTTCCCSEEEECCCSCCEEEEEEECCTTTHHHHHHHTCEEEEEEECGGGGGG
T ss_pred EcCCCcCC--CccCCCCcccccCCcccCCCccceEEEEEecCCCccceEECCCCCCcchhhhhccCeEEEEEeccccccc
Confidence 99999875 67999983 89999999555 99999865799999999974 589999999999999766444
Q ss_pred CCCCCCCceEEEEeeceecchHHHHHhhh-----------CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCC
Q 012003 157 PFAVPDGDITIFISDWYTKSHKKLRKDVE-----------NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPG 225 (473)
Q Consensus 157 ~~~~~~~e~~l~l~d~~~~~~~~~~~~~~-----------~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G 225 (473)
+++.+++|++|+|+||+++.+.++..... .......++.++|||+.+ +.+++++
T Consensus 183 ~lp~~d~d~~l~l~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~liNG~~~--------------p~~~v~~- 247 (513)
T 2wsd_A 183 KLPSDEYDVPLLITDRTINEDGSLFYPSAPENPSPSLPNPSIVPAFCGETILVNGKVW--------------PYLEVEP- 247 (513)
T ss_dssp CCCCGGGEEEEEEEEEEECTTSCEECCSSCSSCCTTSCSSCCCSCCCCSEEEETTEES--------------CEEECCS-
T ss_pred cCCCCCCcEEEEEEeeecCCCCceecccccccccccccccccccccccceEEECCccc--------------ceEEecC-
Confidence 44456899999999999876543321110 001234679999999997 7899988
Q ss_pred cEEEEEEeEeCCCceeEEEEeCc-eeEEEeecCcee-eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCcc
Q 012003 226 KTYRLRVHNVGISTSLNFRIQNH-NLLLVETEGSYT-VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSE 303 (473)
Q Consensus 226 ~~~rlRliN~~~~~~~~~~i~gh-~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~ 303 (473)
++|||||||+|..+.+.|+|+|| +|+|||+||.++ +|..++++.|+|||||||+|++++.+|..++++... .+...
T Consensus 248 ~~~RlRliNa~~~~~~~~~i~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~~~~g~~~~l~~~~--~~~~~ 325 (513)
T 2wsd_A 248 RKYRFRVINASNTRTYNLSLDNGGDFIQIGSDGGLLPRSVKLNSFSLAPAERYDIIIDFTAYEGESIILANSA--GCGGD 325 (513)
T ss_dssp SEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEEEEEEEEESEEEECTTCEEEEEEECGGGTTCEEEEEECC--CSSSS
T ss_pred CEEEEEEEccCCcceEEEEECCCCeEEEEccCCCcccCceEeCeEEECCeeeEEEEEECCCCCCcEEEEEecc--ccccc
Confidence 58999999999999999999999 999999999998 799999999999999999999998667233443322 11111
Q ss_pred CCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEeccccccc
Q 012003 304 WNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELI 383 (473)
Q Consensus 304 ~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~ 383 (473)
.......++|+|..+...........|. .+.. ....+.. ....++++.+.... ..
T Consensus 326 ~~~~~~~~il~~~~~~~~~~~~~~~~p~------~l~~----------~~~~~~~-------~~~~~~~~~l~~~~--~~ 380 (513)
T 2wsd_A 326 VNPETDANIMQFRVTKPLAQKDESRKPK------YLAS----------YPSVQHE-------RIQNIRTLKLAGTQ--DE 380 (513)
T ss_dssp CCTTTTTEEEEEECCSCCSSCCCCCCCS------BCSC----------CGGGCCC-------CEEEEEEEEEEEEE--CT
T ss_pred CCCCCCcceEEEEeccCcccCccCCCCc------cccC----------CCCcccC-------CCcceEEEEEEeec--CC
Confidence 1112345788887543111000000110 0100 0000000 12345666665432 12
Q ss_pred CCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCc
Q 012003 384 EGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYA 463 (473)
Q Consensus 384 ~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~ 463 (473)
.|...|+|||++|..+ . .+.++.|++|+|+|+|.+.+.||||||||+
T Consensus 381 ~g~~~~~iNg~~~~~~---~------------------------------~~~~~~g~~~~w~l~N~~~~~HP~HlHG~~ 427 (513)
T 2wsd_A 381 YGRPVLLLNNKRWHDP---V------------------------------TETPKVGTTEIWSIINPTRGTHPIHLHLVS 427 (513)
T ss_dssp TSCEEEEETTBCTTSC---C------------------------------CBCCBTTCEEEEEEEECSSSCEEEEESSCC
T ss_pred CCCceEeECCccCCCc---c------------------------------cEecCCCCEEEEEEEcCCCCCcCEeEeCce
Confidence 3556899999998532 1 024578999999999998999999999999
Q ss_pred cEEEeec
Q 012003 464 FFVVGWQ 470 (473)
Q Consensus 464 F~Vl~~g 470 (473)
||||+++
T Consensus 428 F~Vl~~~ 434 (513)
T 2wsd_A 428 FRVLDRR 434 (513)
T ss_dssp EEEEEEE
T ss_pred EEEEEec
Confidence 9999986
No 13
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=100.00 E-value=8.4e-67 Score=540.11 Aligned_cols=324 Identities=18% Similarity=0.273 Sum_probs=254.3
Q ss_pred EEEcCC-CCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeec
Q 012003 53 IGINGQ-FPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYF 131 (473)
Q Consensus 53 ~~~Ng~-~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH 131 (473)
|+|||+ +|||+|++++||+|+|+|+|+|+++|+|||||+++. +++||+++ |+|+||++|+|+|++++++||||||
T Consensus 28 ~~~Ng~~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~~~--~~i~PG~~~~Y~f~~~~~~GT~wYH 103 (448)
T 3aw5_A 28 SGYMAEGVLNPTIILRRGQRVDMTLKNKLTEPTIVHWHGFDVN--WHNDAHPS--FAITPGESYNYSFDVVNRAGTYLYH 103 (448)
T ss_dssp TEEEETTEESCEEEEETTCEEEEEEEECSSSCBCEEEETCCCC--HHHHTCGG--GCBCTTCEEEEEEECCSCSEEEEEE
T ss_pred EEECCccccCceEEEeCCCEEEEEEEECCCCceeEEeCCccCC--CccCCCCC--ccCCCCCEEEEEEEcCCCCCceEec
Confidence 999999 999999999999999999999999999999999874 67999996 9999999999999997579999999
Q ss_pred cC----hhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHh--hhCCCCCCCCCeEEEcCCCCCC
Q 012003 132 PS----LDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKD--VENGVDLGVPDGILINGLGPYR 205 (473)
Q Consensus 132 ~H----~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~--~~~~~~~~~~~~~liNG~~~~~ 205 (473)
|| ++.|+.+||+|+|||+++... .+.+...+|++|+++||+++. .++... .........++.++|||+..
T Consensus 104 ~H~~~~~~~q~~~Gl~G~liV~~~~~~-~~l~~d~~e~~l~l~D~~~~~-~~~~~~~~~~~~~~~~~~~~~liNG~~~-- 179 (448)
T 3aw5_A 104 PHPHGLTAKQFYMGQLGLVIVEDSGSD-LGFKYGVNDLPLVISDRRFIG-GAPVYNPTPMEMIAGFLGNAVLVNGVKD-- 179 (448)
T ss_dssp ECCTTTHHHHHHTTCCEEEEEECTTTT-TTCCBTTTEEEEEEEEEEEET-TEEECCCCHHHHHHCCCCSEEEETTEET--
T ss_pred cCCCCchHHHHhccceEEEEEeCCccc-cCCCCCCceEEEEEEeeccCC-CcccccccccccccCccccEEEECCccc--
Confidence 99 789999999999999997654 222222389999999999976 433210 00011224678999999996
Q ss_pred CCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE--eC---ceeEEEeecCceee-eeeeeEEEEcCCceEEEE
Q 012003 206 YDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI--QN---HNLLLVETEGSYTV-QQNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i--~g---h~~~via~DG~~~~-p~~~d~v~l~pGeR~dv~ 279 (473)
+.+++++| +|||||||+|..+.+.|+| +| |+|+|||+||.+++ |..++++.|+|||||||+
T Consensus 180 ------------p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~via~DG~~~~~P~~~~~l~l~pgeR~dvl 246 (448)
T 3aw5_A 180 ------------AVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMRLIAVDQGFLARPIEVRALFLAPAERAEVV 246 (448)
T ss_dssp ------------CEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEEEEEETTEEEEEEEEESCEEECTTCEEEEE
T ss_pred ------------ceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEEEEEeCCCccCCceEeceEEECCcceEEEE
Confidence 88999999 9999999999999999999 99 99999999999998 999999999999999999
Q ss_pred EEeCCCCCcceEEEEeecccCCc----------cCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccccccc
Q 012003 280 VTTDQNASSDYYIVASPRFVNSS----------EWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNV 349 (473)
Q Consensus 280 v~~~~~~g~~y~i~~~~~~~~~~----------~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l 349 (473)
|++++ + .|||++.....+.. ........++|+|.++..... |. .+.. +
T Consensus 247 v~~~~--~-~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------p~------~L~~---l---- 304 (448)
T 3aw5_A 247 VELGE--G-VYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVP------VE------ALSD---P---- 304 (448)
T ss_dssp EEECS--E-EEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCC------CC------CCSC---C----
T ss_pred EECCC--C-ceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCC------cc------ccCC---C----
Confidence 99983 5 89999876532111 011234568888876432111 11 0100 0
Q ss_pred CCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCCCCCCc
Q 012003 350 SAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPK 429 (473)
Q Consensus 350 ~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~ 429 (473)
+..+.+ ...++++.+... ...|+|||++|..+ .|+
T Consensus 305 ---p~~~~~--------~~~~~~~~l~~~-------~~~~~iNg~~~~~~-~p~-------------------------- 339 (448)
T 3aw5_A 305 ---PPEPPK--------PTRTRRFALSLS-------GMQWTINGMFWNAS-NPL-------------------------- 339 (448)
T ss_dssp ---CCCCCC--------CSEEEEEEEEEE-------TTEEEETTBCCCTT-CTT--------------------------
T ss_pred ---CCCCCC--------CCceEEEEEeCC-------CceeeECCCcCCCC-CCc--------------------------
Confidence 000111 235566666542 12599999999532 221
Q ss_pred cceEEEe-ecCCcEEEEEEecCC-CCCCceeecCCccEEEee
Q 012003 430 VDTSLIN-GTYKGFMEIIFQNND-TTVQSYHMDGYAFFVVGW 469 (473)
Q Consensus 430 ~~~~~~~-~~~g~~Veivl~N~~-~~~HP~HLHGh~F~Vl~~ 469 (473)
+. ++.|++|+|+|+|.+ .+.||||||||+||||++
T Consensus 340 -----~~~~~~g~~v~~~i~N~~~~~~HP~HLHG~~F~Vl~~ 376 (448)
T 3aw5_A 340 -----FEHVSVEGVELWEIVNDKASMPHPMHLHGFPMWIIER 376 (448)
T ss_dssp -----CCCEEECEEEEEEEEECSSSCCEEEEESSSCBEEEEE
T ss_pred -----eeccCCCCeEEEEEEcCCCCCCcCEEECCceEEEEEe
Confidence 23 678999999999998 889999999999999998
No 14
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=100.00 E-value=2.2e-65 Score=530.83 Aligned_cols=354 Identities=18% Similarity=0.219 Sum_probs=265.9
Q ss_pred ccCCCeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG 104 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~ 104 (473)
.+.+++++|+|++++.+... +|+.+.+|+|||++|||+||+++||+|+|+|+|+|+++|+|||||+++ ++++||++
T Consensus 45 ~~~~~~~~~~L~~~~~~~~~~~G~~~~~~~~NG~~PGPtIr~~~Gd~v~v~v~N~l~~~tsiHwHGl~~--~~~~DG~p- 121 (481)
T 3zx1_A 45 SKEKNIFHATLEIKENHIELIKGKKTLFYTYNGLVPAPKIEVFEGDKLEILVKNKLKEATTIHWHGVPV--PPDQDGSP- 121 (481)
T ss_dssp CCSTTEEEEEEEEEEEEECCSTTCCEEEEEETTBSSCCBEEEETTCEEEEEEEECSSSCBCCEEETCCC--CGGGSCCT-
T ss_pred ccCCCeEEEEEEEEEEEEEccCCcEEEEEEECCCCCCceEEEECCcEEEEEEEeCCCCCeeEEecCccc--CCccCCCc-
Confidence 35567899999999999986 799999999999999999999999999999999999999999999987 57899997
Q ss_pred CCcccCCCCceEEEEEECCC-ccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH
Q 012003 105 TNCPIPAGWNWTYQFQVKDQ-IGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK 179 (473)
Q Consensus 105 tq~~I~PG~~~~Y~f~~~~~-~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~ 179 (473)
||+|+||++|+|+|+++++ +||||||||. +.|+.+||+|+|||+++.+...++ ++++ |+|+||+++...+
T Consensus 122 -q~~I~PG~s~~Y~f~~~~~~~GT~WYH~H~~~~t~~q~~~GL~G~lIV~~~~~~~~~~---~~~~-l~l~D~~~~~~g~ 196 (481)
T 3zx1_A 122 -HDPILAGEERIYRFEIPQDSAGTYWYHPHPHYTASKQVFMGLAGAFVIKAKKDALSHL---KEKD-LMISDLRLDENAQ 196 (481)
T ss_dssp -TSCBCTTCEEEEEEECCTTCCEEEEEECCCTTTHHHHHHTTCCEEEEEECSSCTTTTS---EEEE-EEEEEECCBTTSC
T ss_pred -cCcCCCCCeEEEEEeCCCCCCceEEEeecCCCcchhhhhccceEEEEEcCccccccCC---Ccee-EEEEEEeccCCCc
Confidence 9999999999999999743 7999999995 689999999999999987543333 4455 9999999875543
Q ss_pred HHHh-hhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCc
Q 012003 180 LRKD-VENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGS 258 (473)
Q Consensus 180 ~~~~-~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~ 258 (473)
+... .........++.++|||+.. |.+++++|+ ||||||+|..+.+.|+|+||.|+|||+||.
T Consensus 197 ~~~~~~~~~~~g~~gd~~lvNG~~~--------------p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~vIa~DGg 260 (481)
T 3zx1_A 197 IPNNNLNDWLNGREGEFVLINGQFK--------------PKIKLATNE--RIRIYNATAARYLNLRIQGAKFILVGTDGG 260 (481)
T ss_dssp CCCCCHHHHHHCCCCSEEEETTEES--------------CEEEEETTE--EEEEEECCSSCCEEEEETTCEEEEEEETTE
T ss_pred cccccchhhccCCcCCEEEECCccC--------------ceEEecCCC--EEEEEecCCCeEEEEEECCCceEEEEcCCC
Confidence 2100 00000123578999999986 899999999 999999999999999999999999999987
Q ss_pred ee-eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCC---ccCCccceEEEEEecCCCCCCCCCCCCCCCCCC
Q 012003 259 YT-VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNS---SEWNKVTGVAILHYSNSLGPASGPLPDPPNAYD 334 (473)
Q Consensus 259 ~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~---~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~ 334 (473)
++ +|..++++.|+|||||||+|++++ ++ +|.+++....... ...........+++.+. ..++|...
T Consensus 261 ~~~~P~~~~~l~l~pgeR~dvlv~~~~-~~-~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~----~~~lP~~l---- 330 (481)
T 3zx1_A 261 LIEKTIYKEELFLSPASRVEVLIDAPK-DG-NFKLESAYYDRDKMMVKEEPNTLFLANINLKKE----NVELPKNL---- 330 (481)
T ss_dssp EEEEEEEESSEEECTTCEEEEEEECSS-CE-EEEEEECCCCCCCSSCCCCCCCEEEEEEEEECC----CCCCCSCS----
T ss_pred ccCCceEeCeEEECCccEEEEEEEcCC-Cc-EEEEEEecccccCccccCCCCceeEEEEecCCC----CccCCccc----
Confidence 65 799999999999999999999995 55 8998875432210 00111222333444431 11222211
Q ss_pred cccccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccc--cccC--Ce--------EEEEecceeccCCCCc
Q 012003 335 TYFSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPA--ELIE--GK--------WRTTLNGISYLPPSTP 402 (473)
Q Consensus 335 ~~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~--~~~~--g~--------~~~~iN~~s~~~p~~P 402 (473)
...+..+. .+.++++.+..... ...+ +. ..|+|||+.|. ++.|
T Consensus 331 ---------------~~~~~~~~---------~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~iNG~~~~-~~~~ 385 (481)
T 3zx1_A 331 ---------------KIFKPSEE---------PKEFKEIIMSEDHMQMHGMMGKSEGELKIALASMFLINRKSYD-LKRI 385 (481)
T ss_dssp ---------------CCCCCCCC---------CCEEEEEEEEECCSTTTTGGGCCHHHHHHHHHTTEEETTBCCC-TTCC
T ss_pred ---------------cCCCCCCC---------CCcEEEEEEeccchhcccccccccccccccccceeEECCEeCC-CCCc
Confidence 00000011 12445555543210 0000 01 24999999984 1122
Q ss_pred hhhhhhcCCCCccccCCCCCCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEee
Q 012003 403 LMLAQQFNIPGAYKLDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGW 469 (473)
Q Consensus 403 ~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~ 469 (473)
. +.++.|++|+|+|.|.+.+.||||||||+|+|+++
T Consensus 386 ~-------------------------------~~~~~G~~v~w~l~N~~~~~Hp~HlHG~~F~vl~~ 421 (481)
T 3zx1_A 386 D-------------------------------LSSKLGVVEDWIVINKSHMDHPFHIHGTQFELISS 421 (481)
T ss_dssp C-------------------------------EEEETTCCEEEEEEECSSSCEEEEETTCCEEEEEE
T ss_pred e-------------------------------EEeCCCCEEEEEEEcCCCCceeEEEeccEEEEEEe
Confidence 1 46789999999999999999999999999999987
No 15
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=100.00 E-value=9e-65 Score=526.05 Aligned_cols=248 Identities=22% Similarity=0.315 Sum_probs=210.4
Q ss_pred CCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcc
Q 012003 29 DPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCP 108 (473)
Q Consensus 29 ~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~ 108 (473)
+..++|+|++++.+++++|+.+.+|+|||++|||+|++++||+|+|+|+|+|+++++|||||+++. +++||++ ||+
T Consensus 15 ~~~~~~~l~~~~~~~~~~G~~~~~~~~NG~~pGP~i~~~~Gd~v~v~~~N~l~~~tsiHwHG~~~~--~~~DG~p--~~~ 90 (488)
T 3od3_A 15 DARNRIQLTIGAGQSTFGGKTATTWGYNGNLLGPAVKLQRGKAVTVDIYNQLTEETTLHWHGLEVP--GEVDGGP--QGI 90 (488)
T ss_dssp CTTSEEEEEEEEEEEEETTEEEEEEEESSSSBCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCC--HHHHCCT--TCC
T ss_pred CCCeeEEEEEEEEEEccCCeEEEEEEECCcCCCCeEEEeCCeEEEEEEEeCCcCceeEeecccccC--cccCCCC--cCc
Confidence 345789999999999999999999999999999999999999999999999999999999999875 5699998 899
Q ss_pred cCCCCceEEEEEECCCccceeeccCh----hhhhcCCeeeEEEEEcCCCCCCCCC--CCCCceEEEEeeceecchHHHHH
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISDWYTKSHKKLRK 182 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d~~~~~~~~~~~ 182 (473)
|+||++|+|+|++.+++||||||||. +.|+.+||+|+|||+++.....+++ ...+|++|+|+||+++.+.++..
T Consensus 91 i~PG~~~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~GL~G~liV~~~~~~~~~lp~~y~~~d~~lvl~D~~~~~~g~~~~ 170 (488)
T 3od3_A 91 IPPGGKRSVTLNVDQPAATCWFHPHQHGKTGRQVAMGLAGLVVIEDDEILKLMLPKQWGIDDVPVIVQDKKFSADGQIDY 170 (488)
T ss_dssp BCTTCEEEEEEECCSCSEEEEEECCCTTTHHHHHHTTCCEEEEEECHHHHTTCCCCCBTTTEEEEEEEEECBCTTSSBCC
T ss_pred CcCCCeEEEEEecCCCceeEEEEecCCCcchhhhhccceeEEEEcCccccccCCcccCCccceeEEEEEeeecCCCceec
Confidence 99999999999996558999999996 6899999999999998765333332 23569999999999975443211
Q ss_pred hhh--CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE-eCceeEEEeecCce
Q 012003 183 DVE--NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI-QNHNLLLVETEGSY 259 (473)
Q Consensus 183 ~~~--~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i-~gh~~~via~DG~~ 259 (473)
... .......++.++|||+.+ |.+.+ +|++|||||||+|..+.+.|++ +||+|+|||+||.+
T Consensus 171 ~~~~~~~~~g~~gd~~lvNG~~~--------------p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~vIa~DG~~ 235 (488)
T 3od3_A 171 QLDVMTAAVGWFGDTLLTNGAIY--------------PQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLYVIASDGGL 235 (488)
T ss_dssp CCSHHHHHHCCCCSEEEETTBSS--------------CEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEEEEEETTEE
T ss_pred cccccccccCCCCCEEEEcCCcC--------------ccEec-CCCEEEEEEEccCCCceeeeeecCCCeEEEEEeCCCc
Confidence 000 001124578999999986 66665 5789999999999999999999 69999999999998
Q ss_pred e-eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 260 T-VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 260 ~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
+ +|..++++.|+|||||||+|++++ ++ .|++++...
T Consensus 236 l~~P~~~~~l~l~pGeR~dvlv~~~~-~~-~~~l~~~~~ 272 (488)
T 3od3_A 236 LPEPVKVSELPVLMGERFEVLVEVND-NK-PFDLVTLPV 272 (488)
T ss_dssp EEEEEEESCEEECTTCEEEEEEEECT-TC-CEEEEECCC
T ss_pred ccCccEeceEEECCCCEEEEEEEeCC-Cc-eEEEEEecc
Confidence 6 799999999999999999999995 45 899987543
No 16
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=100.00 E-value=1.9e-62 Score=529.39 Aligned_cols=247 Identities=17% Similarity=0.197 Sum_probs=202.4
Q ss_pred CeEEEEEEEEEEEe--cCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCC------------------------
Q 012003 30 PYVFYDWTISYVTA--SPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEP------------------------ 83 (473)
Q Consensus 30 ~~~~~~l~~~~~~~--~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~------------------------ 83 (473)
..+.|++++++.+. .+|+..+++|+|||++|||+|+|++||+|+|+|+|+|+++
T Consensus 31 ~~~~~~i~~~~~~~~~~~~~~~t~~~gyNg~~PGPti~~~~Gd~v~v~~~N~L~~~~~~h~hg~~~~~~~~~~~~~~~~~ 110 (612)
T 3gyr_A 31 VTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTEP 110 (612)
T ss_dssp TTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGSC
T ss_pred CcceEEEEEEEEEEeecCCCCcceEEEECCcccCcEEEEeCCcEEEEEEEECCCCCcccccccccccCCCCCCccccccc
Confidence 35678888888764 4677789999999999999999999999999999999654
Q ss_pred -----------------ceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh----hhhhcCCe
Q 012003 84 -----------------LLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGG 142 (473)
Q Consensus 84 -----------------~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl 142 (473)
|+|||||+++ .+++||++ ||+|+||++|+|+|++.+++||||||||. +.|+.+||
T Consensus 111 ~~~~~~~~~~~~~~~~~ttiHwHGl~~--~~~~DGv~--q~~I~PG~~~~Y~f~~~q~~GT~WYHsH~~g~t~~q~~~Gl 186 (612)
T 3gyr_A 111 GRGGVEPNKDVAALPAWSVTHLHGAQT--GGGNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAGL 186 (612)
T ss_dssp SCTTCCCCHHHHTCCCCBCEEEETCCC--CTTTSCCG--GGCBCTTCEEEEEECCCSCSEEEEEEECCTTTHHHHTTTTC
T ss_pred cccccccccccccCCCCceEEcCCCcc--CCcccCcc--cCccCCCCCEEEEEEcCCCCceEEEeeCCCCcchhhhhccc
Confidence 6789999977 46799987 99999999999999996568999999995 68999999
Q ss_pred eeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHh--h-------hC--------CCCCCCCCeEEEcCCCCCC
Q 012003 143 YGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKD--V-------EN--------GVDLGVPDGILINGLGPYR 205 (473)
Q Consensus 143 ~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~--~-------~~--------~~~~~~~~~~liNG~~~~~ 205 (473)
+|+|||+++.+...+.+.+++|++|+|+||+++.+.+.... + .. ......++.++|||+..
T Consensus 187 ~G~liI~d~~~~~~~~p~~d~e~~lvl~Dw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gd~~~vNG~~~-- 264 (612)
T 3gyr_A 187 YGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW-- 264 (612)
T ss_dssp EEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES--
T ss_pred eeEEEEcCccccccCCCCCCccEEEEEEEEecccccccccccccccCCccccccCCCCCCccccCccCceeeecCCcc--
Confidence 99999998776555556779999999999998754332110 0 00 01123468899999986
Q ss_pred CCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc-------eeEEEeecCceee-eeee------eEEEEc
Q 012003 206 YDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH-------NLLLVETEGSYTV-QQNY------TNMDIH 271 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-------~~~via~DG~~~~-p~~~------d~v~l~ 271 (473)
+.+.++. ++|||||||+|..+.+.|+|++| +|+|||+||.+++ |..+ ++|.|+
T Consensus 265 ------------p~~~v~~-~~yRlRliNas~~~~~~l~i~~h~~~~~~~~~~vIa~DG~~l~~Pv~v~~p~~~~~l~i~ 331 (612)
T 3gyr_A 265 ------------PYADVDD-GWYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSAA 331 (612)
T ss_dssp ------------CEEEEES-SEEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEEC
T ss_pred ------------ceEeccC-cEEEEEEEeccCCcceeEEEccCCCccCCceEEEEEeCCCccccceeccCcccccEEEec
Confidence 7788875 68999999999999999999998 4999999999984 5444 589999
Q ss_pred CCceEEEEEEeCCCCCcceEEEEe
Q 012003 272 VGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 272 pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
|||||||+|++++.++..|+++..
T Consensus 332 pGeRydVlV~~~~~~~~~~~~~~~ 355 (612)
T 3gyr_A 332 PAERFDLLVDFRALGGRRLRLVDK 355 (612)
T ss_dssp TTCEEEEEEECTTCTTCEEEEEEC
T ss_pred cceEEEEEEECCCCCceEEEEEec
Confidence 999999999999887734444443
No 17
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=100.00 E-value=1.1e-61 Score=515.05 Aligned_cols=249 Identities=17% Similarity=0.207 Sum_probs=212.7
Q ss_pred CCeEEEEEEEEEEEec--CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCC-----------------------
Q 012003 29 DPYVFYDWTISYVTAS--PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEP----------------------- 83 (473)
Q Consensus 29 ~~~~~~~l~~~~~~~~--~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~----------------------- 83 (473)
...++|+|++++.... +++..+.+|+|||++|||||++++||+|+|+++|+|++.
T Consensus 30 ~~~~~~~l~~~~~~~~l~~~~~~t~~~~ynG~~PGPtI~~~~Gd~v~V~~~N~L~~~~~~~~~~~~~p~~~~g~p~~~~~ 109 (612)
T 2g23_A 30 EVTRETEIALRPTWVRLHPQLPPTLMWGYDGQVPGPTIEVRRGQRVRIAWTNRIPKGSEYPVTSVEVPLGPPGTPAPNTE 109 (612)
T ss_dssp CTTBCEEEEEEEEEECSCTTSCCEEEEEETTBSSCCEEEEETTCCEEEEEEECCCTTCCCSEEEEEECCCSTTSCCGGGS
T ss_pred CCeEEEEEEEEEEEEEECCCCcceEEEEECCccCCceEEEECCeEeeEEEEECcCCcccccccccccccccCCCcccccc
Confidence 3357899999999865 456789999999999999999999999999999999853
Q ss_pred ------------------ceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChh----hhhcCC
Q 012003 84 ------------------LLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD----FQRAAG 141 (473)
Q Consensus 84 ------------------~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~----~q~~~G 141 (473)
+++||||+++. +.+||++ ||+|+||++|+|+|++.+++||||||||.. .|+.+|
T Consensus 110 p~~~g~~~~~~~~~~~~~tsiH~HG~~~~--~~~DG~p--~~~i~PG~s~~Y~f~~~~~aGT~wYH~H~~~~t~~q~~~G 185 (612)
T 2g23_A 110 PGRGGVEPNKDVAALPAWSVTHLHGAQTG--GGNDGWA--DNAVGFGDAQLSEYPNDHQATQWWYHDHAMNITRWNVMAG 185 (612)
T ss_dssp CSCTTCCCCHHHHTCCCCBCEEEETCCCC--TTTSCCG--GGCBCTTCEEEEEECCCSCSCEEEEEECCTTTHHHHTTTT
T ss_pred cccccccccccccccCCceEEEcCCCCCC--CccCCCC--cCCCCCCCeEEEEEEecCCCceEEEecccCCcchhhhhcc
Confidence 89999999875 4599987 899999999999999965799999999975 499999
Q ss_pred eeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH--HHHh-------hhC---C-C----CCCCCCeEEEcCCCCC
Q 012003 142 GYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK--LRKD-------VEN---G-V----DLGVPDGILINGLGPY 204 (473)
Q Consensus 142 l~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~--~~~~-------~~~---~-~----~~~~~~~~liNG~~~~ 204 (473)
|+|+|||+++.+...+++.+|+|++|+|+||+++.+.. +... +.. + . ....++.++|||+..
T Consensus 186 L~G~liV~~~~~~~~~lp~~d~d~~l~l~Dw~~~~~~~~~~~~~l~~~~~~~~~~~~~~g~p~~~~~~gd~~lVNG~~~- 264 (612)
T 2g23_A 186 LYGTYLVRDDEEDALGLPSGDREIPLLIADRNLDTDEDGRLNGRLLHKTVIVQQSNPETGKPVSIPFFGPYTTVNGRIW- 264 (612)
T ss_dssp CEEEEEEECHHHHTTTCCCGGGEEEEEEEEECEEECTTSCEEEEEEEEEEEEESSCSSSSCCEECCCCCSEEEETTEES-
T ss_pred ceeEEEEcCcccccccCCCCcceEEEEEEEEeccCCcccccccccccccccccccccccCcccccCCcCCEEEECCccC-
Confidence 99999999876544444567999999999999975421 1000 010 1 0 114679999999986
Q ss_pred CCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc-------eeEEEeecCcee-eeeeee------EEEE
Q 012003 205 RYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH-------NLLLVETEGSYT-VQQNYT------NMDI 270 (473)
Q Consensus 205 ~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh-------~~~via~DG~~~-~p~~~d------~v~l 270 (473)
+.++|++| +|||||||+|..+.+.|+|++| +|+|||+||.++ +|..++ +|.|
T Consensus 265 -------------p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~vIa~DG~~l~~P~~~~~~~~~~~l~l 330 (612)
T 2g23_A 265 -------------PYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVHQIGSDGGLLPRPVPVDFDDTLPVLSA 330 (612)
T ss_dssp -------------CEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEEEEEETTEEEEEEEEECSSSSSSSEEE
T ss_pred -------------CeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEEEEEeCCeEccCCEEecccCcccEEEE
Confidence 88999999 9999999999999999999999 899999999999 589999 9999
Q ss_pred cCCceEEEEEEeCCCCCcceEEEEee
Q 012003 271 HVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 271 ~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+|||||||+|++++.+|++|+|+...
T Consensus 331 ~pgeR~dvlVd~~~~~g~~~~L~~~~ 356 (612)
T 2g23_A 331 APAERFDLLVDFRALGGRRLRLVDKG 356 (612)
T ss_dssp CTTCEEEEEEECTTCTTCEEEEEECC
T ss_pred CCcCeEEEEEECCCCCCCEEEEEeCC
Confidence 99999999999998777689998764
No 18
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=100.00 E-value=1.5e-54 Score=429.06 Aligned_cols=271 Identities=21% Similarity=0.304 Sum_probs=225.0
Q ss_pred CeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCc
Q 012003 30 PYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNC 107 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~ 107 (473)
.+|+|+|++++..+.+ +|+.+.+|+|||++|||+|++++||+|+|+|+|.++.+++|||||+++..++++||+++ |||
T Consensus 1 ~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~~~~~~DG~p~~t~~ 80 (318)
T 3g5w_A 1 EKREFDLSIEDTRIVLVGKRDFHTFAFNGQVPAPLIHVMEGDDVTVNVTNMTTLPHTIHWHGMLQRGTWQSDGVPHATQH 80 (318)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred CeEEEEEEEEEEEEEcCCCcEEEEEEECCccCCceEEEeCCCEEEEEEEeCCCCceeEEecCcCCCCCcccCCCcccccc
Confidence 3799999999999887 68889999999999999999999999999999999999999999999987789999998 999
Q ss_pred ccCCCCceEEEEEECCCccceeeccChhhhh---cCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhh
Q 012003 108 PIPAGWNWTYQFQVKDQIGSFFYFPSLDFQR---AAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDV 184 (473)
Q Consensus 108 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~---~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 184 (473)
+|+||++++|+|++ +++||||||||...+. .+||+|+|||+++...+.+ ..+++|++|+++||+++..... .
T Consensus 81 ~i~PG~~~~y~f~~-~~~Gt~wYH~H~~~~~~~~~~Gl~G~lIV~~~~~~~~~-~~~d~e~~l~l~dw~~~~~~~~---~ 155 (318)
T 3g5w_A 81 AIEPGDTFTYKFKA-EPAGTMWYHCHVNVNEHVTMRGMWGPLIVEPKNPLPIE-KTVTKDYILMLSDWVSSWANKP---G 155 (318)
T ss_dssp CBCTTCEEEEEEEC-CSCEEEEEECCSSHHHHHHHSCCEEEEEEECSSCCHHH-HTCCEEEEEEEEEECGGGTTCT---T
T ss_pred cCCCCCEEEEEEEc-CCCEEEEEEccCChhhhhccCCCEEEEEEcCCCccccc-ccccceeEEEEEeecccccccc---c
Confidence 99999999999999 4899999999986543 4899999999987542211 1458999999999987542211 1
Q ss_pred hCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee-eee
Q 012003 185 ENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT-VQQ 263 (473)
Q Consensus 185 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~-~p~ 263 (473)
..+.....++.++|||+.++. ...+++++|++|||||+|++.. .+.|||+||.|+||+.||.++ +|.
T Consensus 156 ~~~~~~~~~d~~~ING~~~~~-----------~~~l~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~dG~~~~~p~ 223 (318)
T 3g5w_A 156 EGGIPGDVFDYYTINAKSFPE-----------TQPIRVKKGDVIRLRLIGAGDH-VHAIHTHGHISQIAFKDGFPLDKPI 223 (318)
T ss_dssp CCCCTTCCCCEEEETTBCBTS-----------SCCEEECTTCEEEEEEEECSSS-CEEEEETTSCEEEEEETTEEEEEEE
T ss_pred cCCCCCCcCcEEEEcCcCCCC-----------CccEEeCCCCEEEEEEEeCCCc-eEEEEECCcEEEEEecCCcccCCCc
Confidence 112223457899999998732 2558999999999999999975 799999999999999999997 688
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCc-cCCccceEEEEEecCCC
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSS-EWNKVTGVAILHYSNSL 319 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~-~~~~~~~~ail~y~~~~ 319 (473)
.+|++.|.||||+||++++++ +| .|.+.++...-... ........++|+|++..
T Consensus 224 ~~dtv~l~pger~~v~~~a~~-pG-~w~~hCH~~~H~~~g~~~~~Gm~~~i~~~g~~ 278 (318)
T 3g5w_A 224 KGDTVLIGPGERYDVILNMDN-PG-LWMIHDHVDTHTTNGDKPDGGIMTTIEYEEVG 278 (318)
T ss_dssp EESEEEECTTCEEEEEEECCS-CS-EEEEEESSGGGSCBTTBSSCBSEEEEEETTTC
T ss_pred cccEEEECCCCEEEEEEECCC-Ce-eEEEEeccHHHhhccCcCCCCCEEEEEECCCC
Confidence 999999999999999999995 68 89999887533211 00113447899999754
No 19
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=100.00 E-value=2.1e-53 Score=425.19 Aligned_cols=271 Identities=23% Similarity=0.412 Sum_probs=224.4
Q ss_pred CeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCc
Q 012003 30 PYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNC 107 (473)
Q Consensus 30 ~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~ 107 (473)
.+++|+|++++..+.+ +|+.+.+|+|||++|||+|+|++||+|+|+|+|.++++++|||||+++..++|+||+++ |||
T Consensus 2 ~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pGP~I~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGvp~vtq~ 81 (339)
T 2zwn_A 2 AEREFDMTIEEVTIKVAPGLDYKVFGFNGQVPGPLIHVQEGDDVIVNVTNNTSLPHTIHWHGVHQKGTWRSDGVPGVTQQ 81 (339)
T ss_dssp CEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEESSSCBCCEEETCCCTTCGGGSCCBTTTBC
T ss_pred ceEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCeEEEECCCEEEEEEEECCCCCccEEeCCCCcCCCcccCCCCccccC
Confidence 4789999999999887 59999999999999999999999999999999999999999999999988888999998 999
Q ss_pred ccCCCCceEEEEEECCCccceeeccChhh--hhc-CCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhh
Q 012003 108 PIPAGWNWTYQFQVKDQIGSFFYFPSLDF--QRA-AGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDV 184 (473)
Q Consensus 108 ~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~--q~~-~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~ 184 (473)
+|+||++|+|+|+++ ++||||||||... |+. +||+|+|||+++.....+ ...++|++++++||+...... ..
T Consensus 82 ~I~PG~~~~y~f~~~-~~Gt~wyH~H~~~~~q~~~~Gl~G~liV~p~~~~~~~-~~~d~e~~l~l~d~~~~~~~~---~~ 156 (339)
T 2zwn_A 82 PIEAGDSYTYKFKAD-RIGTLWYHCHVNVNEHVGVRGMWGPLIVDPKQPLPIE-KRVTKDVIMMMSTWESAVADK---YG 156 (339)
T ss_dssp CBCTTCEEEEEEECC-SCEEEEEECCSSHHHHTTTSCCEEEEEEECSSCCTTG-GGCSEEEEEEEEEECGGGTTC---TT
T ss_pred ccCCCCeEEEEEECC-CCEEEEEEecCCchhhhhcCCceEeEEecCCCccccc-ccCCceEEEEeeheecccccc---cC
Confidence 999999999999995 8999999999764 787 999999999986543211 134789999999998732111 00
Q ss_pred hCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceee-ee
Q 012003 185 ENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV-QQ 263 (473)
Q Consensus 185 ~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~-p~ 263 (473)
..+.....++.++|||+.+.. ...+++++|++|||||+|++.. .+.|||+||.|+||+.||.+++ |.
T Consensus 157 ~~g~~~~~~~~~~ING~~~~~-----------~~~~~v~~G~~vrlrliN~~~~-~h~~hlhGh~f~vi~~DG~~~~~p~ 224 (339)
T 2zwn_A 157 EGGTPMNVADYFSVNAKSFPL-----------TQPLRVKKGDVVKIRFFGAGGG-IHAMHSHGHDMLVTHKDGLPLDSPY 224 (339)
T ss_dssp CCCSTTSCCCEEEETTBCTTS-----------SCCEEECTTCEEEEEEEECSSS-CEEEEETTCCEEEEEETTEEEEEEE
T ss_pred CCCCCccccceEEEccccCCC-----------cccEEECCCCEEEEEEEeCCCc-eEEEEECCcEEEEEEeCCeecCCCc
Confidence 111122257899999998632 2568999999999999999955 8999999999999999999986 78
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCC-ccCCccceEEEEEecCCC
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNS-SEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~-~~~~~~~~~ail~y~~~~ 319 (473)
.+|++.|.||||+||++++++ +| .|++.++...-.. .........++|+|.+..
T Consensus 225 ~~dtv~l~pg~r~~v~~~~~~-pG-~w~~hch~~~H~~~~~~~~~gm~a~l~~~g~~ 279 (339)
T 2zwn_A 225 YADTVLVSPGERYDVIIEADN-PG-RFIFHDHVDTHVTAGGKHPGGPITVIEYDGVP 279 (339)
T ss_dssp EESEEEECTTCEEEEEEECCS-CS-EEEEEECCGGGSCBTTBSSCSSEEEEEETTSC
T ss_pred EEEEEEECCCCEEEEEEEeCC-Ce-eEEEEEechhhcccccccCCCcEEEEEECCCC
Confidence 899999999999999999996 58 7989887654211 001123447999998754
No 20
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=3.4e-53 Score=478.72 Aligned_cols=392 Identities=14% Similarity=0.122 Sum_probs=270.9
Q ss_pred cccCCCeEEEEEEEEEEEe--cCC--------------------------CceEEEE-------EEcCC--------CCC
Q 012003 25 CFGGDPYVFYDWTISYVTA--SPL--------------------------GDKQQVI-------GINGQ--------FPG 61 (473)
Q Consensus 25 ~~a~~~~~~~~l~~~~~~~--~~d--------------------------G~~~~~~-------~~Ng~--------~pg 61 (473)
..+.+++|+|-+.|.+... +|. |+.+.+. +||+. +||
T Consensus 15 ~~~~~~~r~y~i~~~~~~w~y~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~PG 94 (1065)
T 2j5w_A 15 TPAWAKEKHYYIGIIETTWDYASDHGEKKLISVDTEHSNIYLQNGPDRIGRLYKKALYLQYTDETFRTTIEKPVWLGFLG 94 (1065)
T ss_dssp -----CEEEEEEEEEEEEEESCCCCCCCBBTTBCSSSTHHHHCCCSSCCCSEEEEEEEEEESSSSTTSBCCCCGGGTTSC
T ss_pred cccccceeEEEEEEEEEEeecCCCCcCCCccccchhhhheecccCCcccCCeEeEEEEEEecceeecCCcccccccCCcC
Confidence 5556778999999999863 332 2333444 57877 999
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCC----CCCCCCCCCC---CCcccCCCCceEEEEEECCC---------c
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHR----KNSWQDGVLG---TNCPIPAGWNWTYQFQVKDQ---------I 125 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~----~~~~~DGv~~---tq~~I~PG~~~~Y~f~~~~~---------~ 125 (473)
|+||+++||+|+|+|+|+|+++++|||||+++. +.+|+||+++ |||+|+||++|+|+|+++++ +
T Consensus 95 P~Ir~~~GD~v~v~v~N~l~~~tsiHwHGl~~~~~~DG~~~~dg~~g~~~t~~~I~PG~t~tY~f~~~~~~gp~~~d~~a 174 (1065)
T 2j5w_A 95 PIIKAETGDKVYVHLKNLASRPYTFHSHGITYYKEHEGAIYPDNTTDFQRADDKVYPGEQYTYMLLATEEQSPGEGDGNC 174 (1065)
T ss_dssp CCEEEETTCEEEEEEEEESSSCBCCEESSSBCCGGGCCCCSCCCCCGGGTGGGCBCTTCEEEEEEECCSTTSCCTTSCSE
T ss_pred CeEEEeCCeEEEEEEEECCCCCeeEEeCCccCCcccCCcccCCCCCcccccccccCCCCEEEEEEEeccccCCccCCCCc
Confidence 999999999999999999999999999999886 4577888874 79999999999999999743 4
Q ss_pred cceeeccChhh--hhcCCeeeEEEEEcCCCCCCCCC-CCCCceEEEEee------ceecchHHHHHhh-hCCCC----C-
Q 012003 126 GSFFYFPSLDF--QRAAGGYGGIIINNRDVIPLPFA-VPDGDITIFISD------WYTKSHKKLRKDV-ENGVD----L- 190 (473)
Q Consensus 126 Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~~~~~~-~~~~e~~l~l~d------~~~~~~~~~~~~~-~~~~~----~- 190 (473)
||||||||.+. |+.+||+|+|||+++.....+.+ .+|+|++|+++| |++... +.... +.+.. .
T Consensus 175 GT~wYHsH~~~~~qv~~GL~G~lIV~~~~~~~~p~~~~~d~e~~l~l~d~d~~~~w~~~~~--~~~~~~~p~~~~~~~~~ 252 (1065)
T 2j5w_A 175 VTRIYHSHIDAPKDIASGLIGPLIICKKDSLDKEKEKHIDREFVVMFSVVDENFSWYLEDN--IKTYCSEPEKVDKDNED 252 (1065)
T ss_dssp EEEEEECCSSHHHHHHHTCEEEEEEECTTCBSSSSBTTCCEEEEEEEEEEEGGGSTTHHHH--HHHHCSCGGGCCTTCHH
T ss_pred eEEEEEeccCchhHhhCccEEEEEEecCcccCCCccCCCccceEEEeeeecCCccccccch--hhhhhcCcccccccccc
Confidence 99999999875 46799999999999875433322 458899999994 554321 11111 11000 0
Q ss_pred --CCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCC-ceeEEEEeCceeEEEeecCceeeeeeeeE
Q 012003 191 --GVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (473)
Q Consensus 191 --~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (473)
..++.++|||+.. +..+.+++++||+|||||+|+|.. ..+.|+|+||.|++ +|..+|+
T Consensus 253 ~~~~~~~~~iNG~~~-----------~~~~~l~v~~Ge~vRlRliNag~~~~~~~~~i~Gh~f~v--------~p~~~dt 313 (1065)
T 2j5w_A 253 FQQSNRMYSVNGYTF-----------GSLSGLSMCAEDRVKWYLFGMGNEVDVHAAFFHGQALTN--------KNYRIDT 313 (1065)
T ss_dssp HHHHTEEEEETTEET-----------TCCCCCEEETTCEEEEEEEECSSTTCCEEEEETTCCEEE--------TTEEESE
T ss_pred ccccCcEEEECCccC-----------CCCcceEECCCCEEEEEEEcCCcccceeEEEEcCCEEEE--------CCeeecE
Confidence 0235789999985 124789999999999999999975 68999999999992 4567999
Q ss_pred EEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCccccccccccccc
Q 012003 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRW 347 (473)
Q Consensus 268 v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~ 347 (473)
+.|+||||+||+|++++ +| .|+|+++...... ....+.++|.+...+.+.+.|.... ... ....++.+.+
T Consensus 314 v~I~pGer~dVlv~~~~-pG-~y~i~~h~~~h~~-----~Gm~~~~~V~~~~~~~~~~~~~g~~--~~~-~~i~A~e~~w 383 (1065)
T 2j5w_A 314 INLFPATLFDAYMVAQN-PG-EWMLSCQNLNHLK-----AGLQAFFQVQECNKSSSKDNIRGKH--VRH-YYIAAEEIIW 383 (1065)
T ss_dssp EEECBTCEEEEEEECCS-CE-EEEEEECSHHHHH-----TTCEEEEEEECSCCCCCCCCCTTSE--EEE-EEEEEEEEEE
T ss_pred EEECCCcEEEEEEEeCC-Ce-eEEEEecCcchhh-----CCCEEEEEEecCCCccccccccccc--eeE-EEEeceeccc
Confidence 99999999999999997 68 9999998753221 2457888888655433333332210 111 2334555666
Q ss_pred ccCCCCC------CCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCC
Q 012003 348 NVSAGAA------RPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPY 421 (473)
Q Consensus 348 ~l~~~~~------~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~ 421 (473)
+..+... ++.|++++ .+++ |.... ...++++.-.+| +.|.+ +.|+...+.
T Consensus 384 dy~~~~~~~~~~~~~~~~~s~-------~~~~-l~~~~-~~ig~~y~k~v~-~~y~d--------------~~f~~~~~~ 439 (1065)
T 2j5w_A 384 NYAPSGIDIFTKENLTAPGSD-------SAVF-FEQGT-TRIGGSYKKLVY-REYTD--------------ASFTNRKER 439 (1065)
T ss_dssp ESCTTSBCTTTCCBTTCTTCT-------THHH-HCCBT-TBCCSEEEEEEE-EEESS--------------TTCCSBCCC
T ss_pred ccCCCCcccccccccCCCccc-------chhh-hccCC-cccCceEeeeee-ecccC--------------CceEEcCcC
Confidence 6654432 22333221 1111 22222 135666766676 66642 233322222
Q ss_pred CCCCCCCccceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEeecC
Q 012003 422 KLMSRAPKVDTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGWQF 471 (473)
Q Consensus 422 ~p~~~~~~~~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~g~ 471 (473)
.|.....-....++.++.|++|+|+|+|.....|+||+||+.|+|++.|.
T Consensus 440 ~~~~~~~g~lgpvi~a~~gd~i~i~f~N~~~~~~s~h~hG~~f~~~~~g~ 489 (1065)
T 2j5w_A 440 GPEEEHLGILGPVIWAEVGDTIRVTFHNKGAYPLSIEPIGVRFNKNNEGT 489 (1065)
T ss_dssp CGGGGGGTTSCCCEEEETTEEEEEEEEECSSSCBCCEEESSBCCGGGCSB
T ss_pred CcccccccccCceEEEeCCCEEEEEEEECCCCCccCcccceeeeccCCCc
Confidence 22111111123578999999999999999999999999999999998875
No 21
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=100.00 E-value=5e-51 Score=406.08 Aligned_cols=262 Identities=21% Similarity=0.247 Sum_probs=220.9
Q ss_pred cCCCeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCCC
Q 012003 27 GGDPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGVL 103 (473)
Q Consensus 27 a~~~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv~ 103 (473)
..+++++|+|++++....+ ||..+.+|+|||++|||+|++++||+|+|+|+|.++ .+++|||||+.+ +||++
T Consensus 34 ~~~~~~~~~l~~~~~~~~~~~G~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~~~~~~~ih~HG~~~-----~dG~~ 108 (327)
T 1kbv_A 34 DYPAKVRVKMETVEKTMKMDDGVEYRYWTFDGDVPGRMIRVREGDTVEVEFSNNPSSTVPHNVDFHAATG-----QGGGA 108 (327)
T ss_dssp SSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGGT
T ss_pred CCCCEEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCeEEEeCCCEEEEEEEECCCCCCceeeEeCcccc-----CCCCC
Confidence 4456789999999999887 899999999999999999999999999999999986 589999999953 78877
Q ss_pred CCCcccCCCCceEEEEEECCCccceeeccCh---hhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH-
Q 012003 104 GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL---DFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK- 179 (473)
Q Consensus 104 ~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~- 179 (473)
. ...|+||++++|+|++ +++||||||||. ..|+.+||+|+|||++++.. +.+|+|++++++||+++....
T Consensus 109 ~-~~~i~PG~~~~y~f~~-~~~Gt~wyH~h~~~~~~~~~~Gl~G~~iV~~~~~~----p~~d~e~~l~~~d~~~~~~~~~ 182 (327)
T 1kbv_A 109 A-ATFTAPGRTSTFSFKA-LQPGLYIYHCAVAPVGMHIANGMYGLILVEPKEGL----PKVDKEFYIVQGDFYTKGKKGA 182 (327)
T ss_dssp T-TTCBCTTEEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTTC
T ss_pred c-ceeecCCCEEEEEEEC-CCCeEEEEEeCCCChhhhhhcceEEEEEEecCCCC----CCCceEEEEEeeeeeccCcccc
Confidence 5 2359999999999999 579999999996 68999999999999986531 245899999999999864210
Q ss_pred -------HHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEE
Q 012003 180 -------LRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL 252 (473)
Q Consensus 180 -------~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 252 (473)
+.... ...++.++|||+.+..+ ..+.+++++||+|||||+|++..+.+.||++||.|+|
T Consensus 183 ~g~~~~~~~~~~-----~~~~~~~~iNG~~~~~~---------~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~v 248 (327)
T 1kbv_A 183 QGLQPFDMDKAV-----AEQPEYVVFNGHVGALT---------GDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDK 248 (327)
T ss_dssp CEEECBCHHHHH-----HTCCSEEEETTSTTTTS---------GGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSE
T ss_pred ccccccChhHhc-----cCCCceEEEcCcccCCC---------CceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEE
Confidence 11011 13568999999997542 1267999999999999999998889999999999999
Q ss_pred EeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 253 VETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 253 ia~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
|+.||.+++|..++++.|+||||+||+|++++ +| +|||+++...... .....|+|+|+++.
T Consensus 249 i~~DG~~~~p~~~d~l~l~pGer~dv~v~~~~-pG-~y~l~~h~~~~~~----~~g~~a~l~~~g~~ 309 (327)
T 1kbv_A 249 VYVEGGKLINENVQSTIVPAGGSAIVEFKVDI-PG-NYTLVDHSIFRAF----NKGALGQLKVEGAE 309 (327)
T ss_dssp EEGGGSSCEECSBSEEEECTTEEEEEEEEECS-CE-EEEEEESSTHHHH----HSSCEEEEEEESCC
T ss_pred EEcCCCcCCCCceeEEEECCCCEEEEEEEeCC-Ce-EEEEEeccccccc----cCCcEEEEEECCCC
Confidence 99999999999999999999999999999996 68 9999998764321 13468999999754
No 22
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=100.00 E-value=2.2e-48 Score=380.26 Aligned_cols=234 Identities=20% Similarity=0.235 Sum_probs=202.9
Q ss_pred eEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcc
Q 012003 31 YVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCP 108 (473)
Q Consensus 31 ~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~ 108 (473)
.++|+|++++..... +|+.+.+|+|||++|||+|++++||+|+|+|+|.++++++|||||++ ..++||+|+ +||+
T Consensus 34 ~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~~~~~~~iH~HG~~---~~~~DG~p~~~~~~ 110 (288)
T 3gdc_A 34 LREWDIVAVDKDFEIAPGIIFKGWSYNGRIPGPTLWAREGDALRIHFTNAGAHPHTIHFHGVH---RATMDGTPGIGAGS 110 (288)
T ss_dssp EEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEECSSSCBCCEESSCC---CGGGSCCTTSTTCS
T ss_pred EEEEEEEEEEEEEEeCCCcEEEEEEECCccCCCcEEEeCCCEEEEEEEeCCCCcccEEecccc---ccccCCCCCcccee
Confidence 589999999988765 49999999999999999999999999999999999999999999996 367999998 9999
Q ss_pred cCCCCceEEEEEECCCccceeeccChh---hhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHHhhh
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSLD---FQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRKDVE 185 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~ 185 (473)
|+||++++|+|++ +++||||||||.. .|+.+||+|+|||+++...+ ..++|++|+++||+.+.
T Consensus 111 i~PG~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~liV~~~~~~~----~~d~e~~l~~~d~~~~~--------- 176 (288)
T 3gdc_A 111 IAPGQSFTYEFDA-TPFGTHLYHCHQSPLAPHIAKGLYGGFIVEPKEGRP----PADDEMVMVMNGYNTDG--------- 176 (288)
T ss_dssp BCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECSSCCC----CCSEEEEEEEEEECCSS---------
T ss_pred ECCCCEEEEEEEc-CCCccEEEEecCcchHHHHhCcCeEEEEEeCCccCC----CCcceEEEEEeeEecCC---------
Confidence 9999999999999 5899999999986 78999999999999876432 33799999999998752
Q ss_pred CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCc-eeEEEEeCceeEEEeecCceeeeee
Q 012003 186 NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIST-SLNFRIQNHNLLLVETEGSYTVQQN 264 (473)
Q Consensus 186 ~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~-~~~~~i~gh~~~via~DG~~~~p~~ 264 (473)
+ ..++.++|||+.+.+ ..+.++++.|+++||||+|++... .+.|||+||.|+|++.++....+..
T Consensus 177 -g---~~~~~~~iNG~~~~~----------~~~~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~~~~~~~~ 242 (288)
T 3gdc_A 177 -G---DDNEFYSVNGLPFHF----------MDFPVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGTMLTPSEY 242 (288)
T ss_dssp -T---TCCSEEEETTSTTHH----------HHSCEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTCCSSCSEE
T ss_pred -C---CCcceEEECcccccc----------cCcccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCCccCCCce
Confidence 1 236789999998621 124689999999999999998653 7999999999999985444345688
Q ss_pred eeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 265 YTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 265 ~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.|++.|.||||++|++++++ +| .|.+.++..
T Consensus 243 ~Dtv~v~pg~~~~v~~~~~~-pG-~~~~hCH~~ 273 (288)
T 3gdc_A 243 TDTISQVQGQRGILELRFPY-PG-KFMFHAHKT 273 (288)
T ss_dssp ESEEEEETTCEEEEEECCCS-CE-EEEEECSSH
T ss_pred eeEEEeCCCceEEEEEECCC-CE-EEEEEecCh
Confidence 99999999999999999994 68 899988654
No 23
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=100.00 E-value=4.5e-47 Score=393.48 Aligned_cols=268 Identities=17% Similarity=0.193 Sum_probs=220.6
Q ss_pred ccCCCeEEEEEEEEEEEec-CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTAS-PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGV 102 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~-~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv 102 (473)
.+.+.+++|+|++++.+.. +||..+.+|+|||++|||+|++++||+|+|+|+|.++ .+++|||||+.+ +||+
T Consensus 23 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgp~i~v~~Gd~v~v~~~N~l~~~~~~~iH~HG~~~-----~dG~ 97 (442)
T 2zoo_A 23 RDHSAKVVINLETREQVGRIADGVEYVFWSFGETVPGSFIRVREGDEIEFNLSNHPSSKMPHNIDLHAVTG-----PGGG 97 (442)
T ss_dssp CSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCBEEEETTCEEEEEEEECTTCSSCBCCEETTCCS-----GGGG
T ss_pred cCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCcCCCCcEEEeCCCEEEEEEEECCCCCCCCCEEecCCcC-----CCCC
Confidence 3456678999999999988 5899999999999999999999999999999999986 599999999964 6887
Q ss_pred CCCCcccCCCCceEEEEEECCCccceeeccC---hhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHH
Q 012003 103 LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPS---LDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKK 179 (473)
Q Consensus 103 ~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H---~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~ 179 (473)
+.+ .+|+||++++|+|++ +++|||||||| ...|+.+||+|+|||++++.. +.+|+|++|+++||++.....
T Consensus 98 ~~~-~~i~pg~~~~y~f~~-~~~Gt~~yH~H~~~~~~~~~~Gl~G~~iv~~~~~~----~~~d~e~~l~l~d~~~~~~~~ 171 (442)
T 2zoo_A 98 AES-SFTAPGHTSTFNFKA-LNPGLYIYHCATAPVGMHIANGMYGLILVEPKEGL----APVDREYYLVQGDFYTKGEFG 171 (442)
T ss_dssp GGG-CCBCTTCEEEEEEEC-CSCEEEEEECCCSSHHHHHHTTCEEEEEEECTTCC----CCCSEEEEEEEEEECBSSCTT
T ss_pred Ccc-EEECCCCEEEEEEEc-CCCeEEEEecCCCChHHHHhCccEEEEEEeCCCCC----CCCCceEEEEeeeeeccCccc
Confidence 752 269999999999999 58999999996 568999999999999986532 244899999999999875310
Q ss_pred -HH-Hhhh-CCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeec
Q 012003 180 -LR-KDVE-NGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETE 256 (473)
Q Consensus 180 -~~-~~~~-~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~D 256 (473)
.. ...+ .......++.++|||+.... ...+.+++++|++|||||+|+|....+.|+++||.|+||+.|
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~liNG~~~~~---------~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~vi~~D 242 (442)
T 2zoo_A 172 EAGLQPFDMAKAIDEDADYVVFNGSVGST---------TDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDTVYVE 242 (442)
T ss_dssp CCEEECBCHHHHHTTCCSEEEETTSTTTT---------SGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSEEEGG
T ss_pred ccccccCChhHhccCCCCEEEECCCcCCC---------CCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEEEecC
Confidence 00 0000 00012467899999998621 012679999999999999999988899999999999999999
Q ss_pred CceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 257 GSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 257 G~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
|.+++|..++++.|.||||+||+|++++ +| +|+++++...... .....++|+|.+..
T Consensus 243 G~~~~p~~~~~~~l~pg~r~~v~v~~~~-~G-~y~~~~~~~~~~~----~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 243 GGSLKNHNVQTTLIPAGGAAIVEFKVEV-PG-TFILVDHSIFRAF----NKGALAMLKVEGPD 299 (442)
T ss_dssp GSSCEECSBSEEEECTTEEEEEEEECCS-CE-EEEEEESSTHHHH----TTSCEEEEEEESCC
T ss_pred CccCCCccceEEEECCCeeEEEEEEcCC-CC-eEEEEeccccccc----ccCceEEEEecCCC
Confidence 9999999999999999999999999995 67 9999997654310 13568999998765
No 24
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=100.00 E-value=2.1e-46 Score=374.25 Aligned_cols=269 Identities=19% Similarity=0.155 Sum_probs=207.7
Q ss_pred ccCCCeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG 104 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~ 104 (473)
.+.+.+++|+|++++..+.+ +|..+.+|+|||++|||+|++++||+|+|+|+|. .+++||||+++......||.+.
T Consensus 27 ~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~ng~~pgP~i~~~~Gd~v~v~~~N~---~~~~h~Hg~~~~~~~~~~~~~~ 103 (333)
T 1mzy_A 27 ASGPVINEFEMRIIEKEVQLDEDAYLQAMTFDGSIPGPLMIVHEGDYVELTLINP---PENTMPHNIDFHAATGALGGGG 103 (333)
T ss_dssp SSSCCEEEEEEEEEEEEEEEETTEEEEEEEETTBSSCCEEEEETTCEEEEEEEEC---TTCCSCBCCEETTSCSGGGGGG
T ss_pred CCCCcEEEEEEEEEEEEEEcCCCcEEEEEEECCccCCCcEEecCCCEEEEEEEEC---CCCcccccceecCCCCCCCCCc
Confidence 34456899999999999876 6999999999999999999999999999999999 5899999998865444555454
Q ss_pred -CCcccCCCCceEEEEEECCCccceeeccChh-----hhhcCCeeeEEEEEcCCCCC----CCCCCCCCceEEEEeecee
Q 012003 105 -TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD-----FQRAAGGYGGIIINNRDVIP----LPFAVPDGDITIFISDWYT 174 (473)
Q Consensus 105 -tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~-----~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~l~d~~~ 174 (473)
+ .|+||++++|+|++ +++||||||||.. .|+.+||+|+|||+++...+ .++ .+|+|++|+++||++
T Consensus 104 ~~--~i~PG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~ 179 (333)
T 1mzy_A 104 LT--LINPGEKVVLRFKA-TRAGAFVYHCAPGGPMIPWHVVSGMAGCIMVLPRDGLKDHEGKPV-RYDTVYYIGESDHYI 179 (333)
T ss_dssp GC--CBCTTEEEEEEEEC-CSCEEEEEECCCSTTHHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECC
T ss_pred ee--EeCCCCEEEEEEEC-CCCEEEEEeecCCcccchhhhhCCCEEEEEEccCcCccccccCCC-ccchheeeeeeeecc
Confidence 5 49999999999999 4899999999985 69999999999999765321 122 458999999999998
Q ss_pred cc--hHHHH----------HhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeE
Q 012003 175 KS--HKKLR----------KDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLN 242 (473)
Q Consensus 175 ~~--~~~~~----------~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 242 (473)
.. ...+. ...+. .....++.++|||+.... ...+.+++++||+||||++|++....+
T Consensus 180 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ING~~~~~---------~~~~~l~v~~Ger~Rl~n~~~~~~~~~- 248 (333)
T 1mzy_A 180 PKDEDGTYMRFSDPSEGYEDMVAV-MDTLIPSHIVFNGAVGAL---------TGEGALKAKVGDNVLFVHSQPNRDSRP- 248 (333)
T ss_dssp CBCTTSCBCCCSSHHHHHHHHHHH-HTTTCCSEEEETTSTTTT---------SGGGCEEEETTCEEEEEEEESSSCBCE-
T ss_pred CccccccccccccccccccchhHH-hhccCCcEEEECCccccc---------CCCcceEecCCCEEEEEECCCCCcccc-
Confidence 32 11110 00000 012467899999998521 113679999999988877765543223
Q ss_pred EEEeCceeEEEeecCceeee-e-eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 243 FRIQNHNLLLVETEGSYTVQ-Q-NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 243 ~~i~gh~~~via~DG~~~~p-~-~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
..+++|.++|++ ||.++++ . .+|++.|+||||+||+|++++ +| +|++.++...... .....|+++|.+..
T Consensus 249 h~i~~h~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~a~~-pG-~y~~~ch~~~h~~----~~Gm~~~~~v~~~~ 320 (333)
T 1mzy_A 249 HLIGGHGDLVWE-TGKFHNAPERDLETWFIRGGTAGAALYKFLQ-PG-VYAYVNHNLIEAV----HKGATAHVLVEGEW 320 (333)
T ss_dssp EEETCCEEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCS-CE-EEEEEESSHHHHH----TTCCEEEEEEESCC
T ss_pred EEECCCCeEEEe-CCcccCCCccCcceEEECCCceEEEEEEcCC-CE-EEEEecChhhhHh----hCCCEEEEEEcCCC
Confidence 237899999999 9999864 3 489999999999999999996 58 9999998753210 13567899998644
No 25
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=100.00 E-value=6.1e-46 Score=371.44 Aligned_cols=267 Identities=20% Similarity=0.194 Sum_probs=204.8
Q ss_pred CCCeEEEEEEEEEEEec--CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-
Q 012003 28 GDPYVFYDWTISYVTAS--PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG- 104 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~~~--~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~- 104 (473)
...+++|+|++++.... +||..+.+|+|||++|||+|++++||+|+|+|+|.+. ++||||+++.+..++||.+.
T Consensus 29 ~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~~---~~~~h~~~~h~~~~~~~~~~~ 105 (336)
T 1oe1_A 29 GPKVVEFTMTIEEKKMVIDDKGTTLQAMTFNGSMPGPTLVVHEGDYVQLTLVNPAT---NAMPHNVDFHGATGALGGAKL 105 (336)
T ss_dssp CCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCCEEEETTCEEEEEEEECTT---CCSCBCCEETTSCSGGGGGGG
T ss_pred CCcEEEEEEEEEEEEEEECCCCcEEEEEEECCccCCCeEEEcCCCEEEEEEEcCCC---CCccccceECCCCCCCCCcce
Confidence 44678999999998754 6799999999999999999999999999999999973 45666666655555666655
Q ss_pred CCcccCCCCceEEEEEECCCccceeeccCh----hhhhcCCeeeEEEEEcCCCCC----CCCCCCCCceEEEEeeceecc
Q 012003 105 TNCPIPAGWNWTYQFQVKDQIGSFFYFPSL----DFQRAAGGYGGIIINNRDVIP----LPFAVPDGDITIFISDWYTKS 176 (473)
Q Consensus 105 tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~----~~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~l~d~~~~~ 176 (473)
++ |+||++++|+|++ +++||||||||. ..|+.+||+|+|||+++...+ .+. .+|+|++|+++||++..
T Consensus 106 ~~--i~pG~~~~y~f~~-~~~Gt~~yH~h~~~~~~~~~~~Gl~G~liV~~~~~~~~~~~~~~-~~D~e~~l~~~D~~~~~ 181 (336)
T 1oe1_A 106 TN--VNPGEQATLRFKA-DRSGTFVYHCAPEGMVPWHVVSGMSGTLMVLPRDGLKDPQGKPL-HYDRAYTIGEFDLYIPK 181 (336)
T ss_dssp CC--BCTTEEEEEEEEC-CSCEEEEEECCCTTCHHHHHHTTCEEEEEEECTTCCBCTTSCBC-CCSEEEEEEEEEECCCB
T ss_pred EE--eCCCCEEEEEEEC-CCCeEEEEecCCCCchhHHHhCCCeEEEEEecCcCCcccccCcc-cCCceeEeeeeeeeecc
Confidence 54 9999999999999 479999999996 479999999999999865321 121 45899999999999842
Q ss_pred hH--HHHHhhhCC---------CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEE-
Q 012003 177 HK--KLRKDVENG---------VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFR- 244 (473)
Q Consensus 177 ~~--~~~~~~~~~---------~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~- 244 (473)
+. .+..+...+ .....++.++|||+....| ..+.+++++||+||| +|++..+.+.++
T Consensus 182 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~---------~~~~l~v~~GervRl--in~~~~~~~~~~~ 250 (336)
T 1oe1_A 182 GPDGKYKDYATLAESYGDTVQVMRTLTPSHIVFNGKVGALT---------GANALTAKVGETVLL--IHSQANRDTRPHL 250 (336)
T ss_dssp CTTSSBCCCSSTGGGHHHHHHHHHTTCCSEEEETTSTTTTS---------GGGCEEEETTCEEEE--EEEESSSCBCEEE
T ss_pred ccCCceeecccccccccchhhHhhcCCCCEEEECCeeccCC---------CCcceEcCCCCEEEE--EecCCCCccceEE
Confidence 11 110000000 0124678999999997442 137799999997765 666666666655
Q ss_pred EeCceeEEEeecCceeeee--eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 245 IQNHNLLLVETEGSYTVQQ--NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 245 i~gh~~~via~DG~~~~p~--~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
+++|.++|++ ||.+++|. .++++.|+||||+||+|++++ +| +|+++++...... .....|+++|++..
T Consensus 251 i~gh~~~Vi~-DG~~~~p~~~~~dtv~i~pGer~dvlv~~~~-pG-~y~~~~h~~~~~~----~~G~~~~~~V~~~~ 320 (336)
T 1oe1_A 251 IGGHGDWVWE-TGKFANPPQRDLETWFIRGGSAGAALYTFKQ-PG-VYAYLNHNLIEAF----ELGAAGHIKVEGKW 320 (336)
T ss_dssp TTCCEEEEET-TCCTTSCCEEEESBCCBCTTEEEEEEEECCS-CE-EEEEEESSHHHHH----TTSCEEEEEEESCC
T ss_pred ECCcCceEeC-CCcCcCCccccceEEEECCCCcEEEEEEcCC-Cc-eEEEEechhhccc----cCCCeEEEEECCCC
Confidence 5999999998 99998764 468999999999999999997 68 9999998753210 13567899998754
No 26
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=100.00 E-value=8.4e-46 Score=359.80 Aligned_cols=240 Identities=17% Similarity=0.208 Sum_probs=199.0
Q ss_pred cCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC
Q 012003 27 GGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN 106 (473)
Q Consensus 27 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq 106 (473)
+...+|+|+|++++.. .+.....++++||++|||+||+++||+|+|+|+|+++++++|||||+++. .++||++.+|
T Consensus 3 ~~g~~~~~~l~~~~~~--~~~~~~~~~~~ng~~pGP~i~~~~Gd~v~v~~~N~~~~~~siH~HG~~~~--~~~DG~~~t~ 78 (276)
T 3kw8_A 3 AGGEVRHLKMYAEKLA--DGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYE--ISSDGTAMNK 78 (276)
T ss_dssp -CCCEEEEEEEEEECT--TSCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCTTTT
T ss_pred CcceEEEEEEEEEeCC--CCceecceeccCCcccCCeEEEECCCEEEEEEEECCCCCccEeecCcccC--CccCCCcCCc
Confidence 4556899999999853 34455577889999999999999999999999999999999999999885 4699999889
Q ss_pred cccCCCCceEEEEEECC------------CccceeeccChh------hhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEE
Q 012003 107 CPIPAGWNWTYQFQVKD------------QIGSFFYFPSLD------FQRAAGGYGGIIINNRDVIPLPFAVPDGDITIF 168 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~------------~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 168 (473)
|+|+||++|+|+|++++ ++||||||||.. .|+.+||+|+|||+++... ..|+|++|+
T Consensus 79 ~~i~pG~~~~Y~f~~~~~~~~~~g~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~drE~~l~ 153 (276)
T 3kw8_A 79 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHTIV 153 (276)
T ss_dssp CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEEEE
T ss_pred CCCCCCCEEEEEEEcCCccccccCccCCCCCEEEEEecCccccccchhhhhCccEEEEEEecCCCc-----ccccceEEE
Confidence 99999999999999963 379999999973 6899999999999997642 128999998
Q ss_pred EeeceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc
Q 012003 169 ISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH 248 (473)
Q Consensus 169 l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh 248 (473)
+++| +|||+.+. ..+.++++.|+++||||+|.+.. .+.||+|||
T Consensus 154 l~~~------------------------~iNG~~~~-----------~~p~i~v~~G~~vri~l~N~~~~-~Hp~HlHG~ 197 (276)
T 3kw8_A 154 FNDM------------------------TINNRKPH-----------TGPDFEATVGDRVEIVMITHGEY-YHTFHMHGH 197 (276)
T ss_dssp EETT------------------------EETTCCTT-----------CCCCEEEETTCEEEEEEEEESSC-CEEEEETTC
T ss_pred eccc------------------------ccceeccc-----------CCCCEEEecCCEEEEEEecCCCc-ceeEEEccc
Confidence 8664 89999862 34889999999999999999975 899999999
Q ss_pred eeEEEeecCcee----eeeeeeEEEEcCCceEEEEEEeCC--CCCcceEEEEeecccCCccCCccceEEEEEecCC
Q 012003 249 NLLLVETEGSYT----VQQNYTNMDIHVGQSFSFLVTTDQ--NASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 249 ~~~via~DG~~~----~p~~~d~v~l~pGeR~dv~v~~~~--~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
.|++++ ||... .+..+|++.|.|||++++++++++ .+| .|++.++...-.. ..-.+.+.+...
T Consensus 198 ~f~v~~-~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~~~~~npG-~w~~HCH~~~H~~-----~GM~g~~~V~~~ 266 (276)
T 3kw8_A 198 RWADNR-TGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAG-AWMYHCHVQSHSD-----MGMVGLFLVKKP 266 (276)
T ss_dssp CEESSS-SSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSE-EEEEEECSHHHHH-----TTCEEEEEEECT
T ss_pred eeEEec-cCccCCCcccccCCccEEeCCCceEEEEEEeccCCCCC-eEEEECCCchHhh-----CCCeEEEEEeCC
Confidence 999876 66543 235789999999999999999985 578 9999998643211 233566666543
No 27
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=100.00 E-value=1.3e-45 Score=369.62 Aligned_cols=268 Identities=17% Similarity=0.174 Sum_probs=204.5
Q ss_pred ccCCCeEEEEEEEEEEEec--CCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC
Q 012003 26 FGGDPYVFYDWTISYVTAS--PLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL 103 (473)
Q Consensus 26 ~a~~~~~~~~l~~~~~~~~--~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 103 (473)
.+.+.+++|+|++++.... +||..+.+|+|||++|||+|++++||+|+|+|+|.+ +++||||+++.+....||..
T Consensus 33 ~~~~~~~~~~l~~~~~~~~~~~dg~~~~~~~~ng~~pgP~i~v~~Gd~v~v~~~N~~---~~~~~hg~~~~~~~~~~~~~ 109 (340)
T 2bw4_A 33 KTGPRVVEFTMTIEEKKLVIDREGTEIHAMTFNGSVPGPLMVVHENDYVELRLINPD---TNTLLHNIDFHAATGALGGG 109 (340)
T ss_dssp SSSCCEEEEEEEEEEEEEECSTTCCEEEEEEETTBSSCCEEEEETTCEEEEEEEECT---TCCSCBCCEETTSCSGGGGG
T ss_pred cCCCcEEEEEEEEEEEEEEECCCCcEEEEEEECCCCCCCcEEEcCCCEEEEEEEeCC---CCCccCcceeCCcCCCCCCc
Confidence 3456789999999999876 569999999999999999999999999999999998 78999999876544344433
Q ss_pred C-CCcccCCCCceEEEEEECCCccceeeccChh----hhhcCCeeeEEEEEcCCCCC----CCCCCCCCceEEEEeecee
Q 012003 104 G-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD----FQRAAGGYGGIIINNRDVIP----LPFAVPDGDITIFISDWYT 174 (473)
Q Consensus 104 ~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~----~q~~~Gl~G~liV~~~~~~~----~~~~~~~~e~~l~l~d~~~ 174 (473)
. + .|+||++++|+|+++ ++||||||||.. .|+.+||+|+|||++++... .+. .+|+|++|+++||++
T Consensus 110 ~~~--~i~PG~~~~y~~~~~-~~Gt~wyH~h~~~~~~~~~~~Gl~G~~iV~~~~~~~~~~~~p~-~~d~e~~l~l~D~~~ 185 (340)
T 2bw4_A 110 ALT--QVNPGEETTLRFKAT-KPGVFVYHCAPEGMVPWHVTSGMNGAIMVLPRDGLKDEKGQPL-TYDKIYYVGEQDFYV 185 (340)
T ss_dssp GGC--CBCTTEEEEEEEECC-SCEEEEEECCCTTCHHHHHHTTCEEEEEEECTBCEECTTSCEE-CCSEEEEEEEEEECC
T ss_pred cce--EeCCCCEEEEEEECC-CCeEEEEEcCCCCchhhHHhCcCEEEEEEccCcCcccccCCCc-CcceeEEEeeeeeee
Confidence 3 5 499999999999995 799999999974 79999999999999865311 122 458999999999998
Q ss_pred c--chHHHH----------HhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeE
Q 012003 175 K--SHKKLR----------KDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLN 242 (473)
Q Consensus 175 ~--~~~~~~----------~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~ 242 (473)
. ....+. ...+. .....++.++|||+.+.. ...+.+++++||++||+++|.+.. ...
T Consensus 186 ~~~~~g~~~~~~~~~~~~~~~~~~-~~~~~~~~~~iNG~~~~~---------~~~~~l~v~~G~r~Rl~n~~~~~~-~~~ 254 (340)
T 2bw4_A 186 PKDEAGNYKKYETPGEAYEDAVKA-MRTLTPTHIVFNGAVGAL---------TGDHALTAAVGERVLVVHSQANRD-TRP 254 (340)
T ss_dssp CBCTTSCBCCCCSHHHHHHHHHHH-HHTTCCSEEEETTSTTTT---------SGGGCEEEETTCEEEEEEEESSSC-BCE
T ss_pred ccccCCcccccccccccccchhhH-hhcCCCCEEEECCccCCc---------cCCCceEcCCCCEEEEEECCCCCc-cce
Confidence 3 211110 00000 012457899999998621 113789999999887766665433 223
Q ss_pred EEEeCceeEEEeecCceeee--eeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecc-cCCccCCccceEEEEEecCCC
Q 012003 243 FRIQNHNLLLVETEGSYTVQ--QNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRF-VNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 243 ~~i~gh~~~via~DG~~~~p--~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~-~~~~~~~~~~~~ail~y~~~~ 319 (473)
.++++|.++|++ ||.++.+ ..++++.|+||||+||+|++++ +| +|+++++... ... ....|+++|.+..
T Consensus 255 ~~i~gh~~~Vi~-dG~~~~~p~~~~dtv~l~pGer~~v~v~~~~-pG-~y~~~~h~~~~h~~-----~Gm~~~~~V~~~~ 326 (340)
T 2bw4_A 255 HLIGGHGDYVWA-TGKFRNPPDLDQETWLIPGGTAGAAFYTFRQ-PG-VYAYVNHNLIEAFE-----LGAAGHFKVTGEW 326 (340)
T ss_dssp EEETCCEEEEET-TCCTTSCCEEEESCCCBCTTEEEEEEEECCS-CE-EEEEEESSHHHHHT-----TSCEEEEEEESCC
T ss_pred EEecCcceEEeC-CCcccCCccccceEEEeCCCceEEEEEECCC-Ce-eeEEEcCchHHHHh-----CCCEEEEEECCCC
Confidence 348999999997 9988754 3589999999999999999997 68 9999998752 111 2356899998654
No 28
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=100.00 E-value=3.5e-45 Score=361.57 Aligned_cols=242 Identities=17% Similarity=0.197 Sum_probs=196.5
Q ss_pred cccCCCeEEEEEEEEEEEecCCCce-EEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC
Q 012003 25 CFGGDPYVFYDWTISYVTASPLGDK-QQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL 103 (473)
Q Consensus 25 ~~a~~~~~~~~l~~~~~~~~~dG~~-~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 103 (473)
+.+...+|+++|.+. .-++|.. ..++..|+++|||+||+++||+|+|+|+|+|++++||||||+++. +.+||++
T Consensus 7 ~p~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~t~PGP~i~~~~Gd~v~v~~~N~l~~~~siH~HG~~~~--~~~dG~~ 81 (313)
T 3tas_A 7 APAGGEVKRIKLYAE---RLGGGQMGYGLEKGKATIPGPLIELNEGDTLHIEFENTMDVPVSLHVHGLDYE--ISSDGTK 81 (313)
T ss_dssp CCCCCCEEEEEEEEE---ECGGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCST
T ss_pred CCCCceEEEEEEEEE---EcCCCceeeeeecCCccccCCeEEEECCCEEEEEEEECCCCCccEeecCCcCC--ccCCCCc
Confidence 334455688887664 3466654 456778999999999999999999999999999999999999774 6799999
Q ss_pred CCCcccCCCCceEEEEEEC------------CCccceeeccChh------hhhcCCeeeEEEEEcCCCCCCCCCCCCCce
Q 012003 104 GTNCPIPAGWNWTYQFQVK------------DQIGSFFYFPSLD------FQRAAGGYGGIIINNRDVIPLPFAVPDGDI 165 (473)
Q Consensus 104 ~tq~~I~PG~~~~Y~f~~~------------~~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~ 165 (473)
.+||+|+||++|+|+|++. +++||||||||.. .|+.+||+|+|||+++... .+|+|+
T Consensus 82 ~~~~~i~PG~~~~Y~~~~~~P~~~~~~~~~~~~~gt~~YH~h~~~~~~~~~~~~~Gl~G~liV~~~~~~-----~~d~e~ 156 (313)
T 3tas_A 82 QSRSDVEPGGTRTYTWRTHVPGRRADGTWRAGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDRTH 156 (313)
T ss_dssp TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCB-----CCSEEE
T ss_pred cccCCcCCCCEEEEEEEeccCCccccccccCCCceEEEEeecCcccccchhhhhccccCceEeeccccc-----cccccc
Confidence 8999999999999999863 3579999999964 3578999999999987642 348999
Q ss_pred EEEEeeceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE
Q 012003 166 TIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI 245 (473)
Q Consensus 166 ~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 245 (473)
+|+++|| .+||+... ..+.++++.|+++||||+|++.. .+.|||
T Consensus 157 ~l~~~d~------------------------t~Ng~~~~-----------~~~~l~v~~Ge~vr~~liN~g~~-~hpfHl 200 (313)
T 3tas_A 157 TIVFNDM------------------------TINNRPAH-----------TGPDFEATVGDRVEFVMITHGEY-YHTFHL 200 (313)
T ss_dssp EEEEETT------------------------EETTCCTT-----------CCCCEEEETTCEEEEEEEEESSC-CEEEEE
T ss_pred eeeccch------------------------hcccCCcc-----------cccccccccCCEEEEEEeccccc-ceeeee
Confidence 9999987 45666642 23779999999999999999954 899999
Q ss_pred eCceeEEEeecCcee---eeeeeeEEEEcCCceEEEEEEeCC--CCCcceEEEEeecccCCccCCccceEEEEEecCC
Q 012003 246 QNHNLLLVETEGSYT---VQQNYTNMDIHVGQSFSFLVTTDQ--NASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 246 ~gh~~~via~DG~~~---~p~~~d~v~l~pGeR~dv~v~~~~--~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
+||.|+|++.||... .+..+|++.|.||||++++|.+.+ .+| .|.+.++...-.. ..-.+.+.++..
T Consensus 201 HGh~F~v~~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~~~~nPG-~w~~HCHi~~H~~-----~GM~~~f~V~~~ 272 (313)
T 3tas_A 201 HGHRWADNRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAGEGVGAG-AWMYHCHVQSHSD-----MGMVGLFLVKKP 272 (313)
T ss_dssp TTCCEESSTTSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSE-EEEEEECSHHHHH-----TTCEEEEEEECT
T ss_pred cCCeeEEEEECCccCCCCCCeeeeEEEeCCCcceEEEEEeccCCCCE-eEEEEeCChHHHH-----CCCeEEEEEECC
Confidence 999999999998765 367799999999999999998764 367 8888887642211 234567777643
No 29
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=100.00 E-value=5.1e-45 Score=357.78 Aligned_cols=242 Identities=16% Similarity=0.190 Sum_probs=194.6
Q ss_pred cccCCCeEEEEEEEEEEEecCCC-ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC
Q 012003 25 CFGGDPYVFYDWTISYVTASPLG-DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL 103 (473)
Q Consensus 25 ~~a~~~~~~~~l~~~~~~~~~dG-~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~ 103 (473)
..+.+.+|+++|.+++.. +| ....++.+||++|||+||+++||+|+|+|+|+|++++||||||+++ ++++||++
T Consensus 23 ~~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~gt~PGP~i~~~~GD~v~v~~~N~l~~~~siH~HG~~~--~~~~DG~~ 97 (299)
T 3t9w_A 23 VRAQGTTRRITMYAEKIS---DELYGYGLAPGGATVPGPVLEMWEGDTLEIDLVNTTDRVLSLHPHGVDY--DVNSDGTL 97 (299)
T ss_dssp ----CCEEEEEEEEEEEE---TTEEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBC--CGGGSCCT
T ss_pred cccCCCEEEEEEEEEecC---CCceeeeecCCCCCccCceEEEECCeEEEEEEEECCCCCccEEeCCccc--CCccCCCc
Confidence 445667899999888764 33 2344566799999999999999999999999999999999999976 46799998
Q ss_pred CCCcccCCCCceEEEEEEC------------CCccceeeccChh------hhhcCCeeeEEEEEcCCCCCCCCCCCCCce
Q 012003 104 GTNCPIPAGWNWTYQFQVK------------DQIGSFFYFPSLD------FQRAAGGYGGIIINNRDVIPLPFAVPDGDI 165 (473)
Q Consensus 104 ~tq~~I~PG~~~~Y~f~~~------------~~~Gt~wYH~H~~------~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~ 165 (473)
.+||+|+||++|+|+|+++ +++||||||||.. .|+.+||+|+|||+++.. . ..|+|+
T Consensus 98 ~~~~~i~PG~t~~Y~~~~~~~~~~~~~~~~~~~~gt~~YH~H~~~~~~~~~~~~~GL~G~liV~~~~~--~---~~d~e~ 172 (299)
T 3t9w_A 98 MNGSAVMPGQTRRYTWRSHVGYRRADGSWAEGTAGYWHYHDHAMGTEHGTEGVLKGLYGALVVRRQGD--L---LPKRQF 172 (299)
T ss_dssp TTTCCBCTTCEEEEEEBCCCCEECTTSCEECCCCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTC--C---CCSEEE
T ss_pred cccCccCCCCeEEEEEEeecccccCCCcCCCCCceeEEEecCCcccccchhhhcccccceEEEecccc--c---Cccccc
Confidence 8999999999999999985 2579999999963 478899999999998764 2 348999
Q ss_pred EEEEeeceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEE
Q 012003 166 TIFISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRI 245 (473)
Q Consensus 166 ~l~l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i 245 (473)
++++++| .+||+... ..+.++++.||++||||+|++.. .+.|||
T Consensus 173 ~l~~~~~------------------------~~Ng~~~~-----------~~p~l~v~~Ge~Vr~~liN~~~~-~HpfHl 216 (299)
T 3t9w_A 173 TVVFNDM------------------------MINNRAHH-----------DAPTFEANLGERVEWIAIGHGSN-FHTFHL 216 (299)
T ss_dssp EEEEETT------------------------EETTCCTT-----------CCCEEEEETTCEEEEEEEEESSC-CCEEEE
T ss_pred eeeeeee------------------------eecCcccc-----------ccccceecCCCEEEEEEEecccc-ceeeeE
Confidence 9998776 47887753 24889999999999999999975 799999
Q ss_pred eCceeEEEeecCceee---eeeeeEEEEcCCceEEEEEEeCC--CCCcceEEEEeecccCCccCCccceEEEEEecCC
Q 012003 246 QNHNLLLVETEGSYTV---QQNYTNMDIHVGQSFSFLVTTDQ--NASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 246 ~gh~~~via~DG~~~~---p~~~d~v~l~pGeR~dv~v~~~~--~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
+||.|+|+..|+.... +..+|++.|.||||++++|.+.+ .+| .|.+.++...-.. ..-.+++.+...
T Consensus 217 HGh~F~v~~~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~~~dnPG-~w~~HCHi~~H~~-----~GM~~~f~V~~~ 288 (299)
T 3t9w_A 217 HGHRWLDNRTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAGEGVGPG-MWMYHCHVQNHSD-----MGMAGMFLVRNA 288 (299)
T ss_dssp TTCCEESSSSSSCCSTTCCCCEESEEECCTTCEEEEEEETTTTTCSE-EEEEEECSHHHHH-----TTCEEEEEEECT
T ss_pred ecceEEEEecccccCCcCCCCceeeEEeCCceeEEEEEEEeeCCCCe-eEEEEcCCHHHHh-----cCCeEEEEEECC
Confidence 9999999999887653 35689999999999999997654 368 8988887643211 233556666543
No 30
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=2.3e-40 Score=343.75 Aligned_cols=258 Identities=18% Similarity=0.173 Sum_probs=210.4
Q ss_pred CCeEEEEEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCCCC-
Q 012003 29 DPYVFYDWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGVLG- 104 (473)
Q Consensus 29 ~~~~~~~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv~~- 104 (473)
+.++.++|++++..... +|....+|+|||++|||+|++++||+++|||+|.+. ..++|||||+. .+||++.
T Consensus 161 ~~~~~~~l~~~~~~~~~~~g~~~~~~~~NG~~pgp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~~-----~~DG~~~~ 235 (447)
T 2dv6_A 161 AKTVRIDLETVEVKGQLDDNTTYTYWTFNGKVPGPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGAT-----GPGGAAAF 235 (447)
T ss_dssp CCEEEEEEEEEEEEEEEETTEEEEEEEETTBBSCCCEEEETTCEEEEEEEECTTCSSCBCCEETTCC-----SGGGGGGG
T ss_pred CcEEEEEEEEEEEEEeccCCceeEEEEECCccCCCeEEecCCCEEEEEEEeCCCCceeEEEeecccc-----CCCCCCcc
Confidence 34567888877766655 688899999999999999999999999999999985 57999999984 3799875
Q ss_pred CCcccCCCCceEEEEEECCCccceeeccCh---hhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchH---
Q 012003 105 TNCPIPAGWNWTYQFQVKDQIGSFFYFPSL---DFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHK--- 178 (473)
Q Consensus 105 tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~---~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~--- 178 (473)
+ .|.||++++|.|++. ++|+||||||. ..|..+||+|+|+|+++... +.+|+|++++++||++....
T Consensus 236 ~--~i~pG~~~~~~~~~~-~~G~~~yh~h~~~~~~~~~~Gl~g~l~v~~~~~~----P~~d~~~~~~~~~~~~~~~~~~~ 308 (447)
T 2dv6_A 236 T--QTDPGEETVVTFKAL-IPGIYVYHCATPSVPTHITNGMYGLLLVEPEGGL----PQVDREFYVMQGEIYTVKSFGTS 308 (447)
T ss_dssp C--CBCTTCEEEEEEECC-SCEEEEEECCSSSHHHHHHTTCEEEEEEECTTCS----CCCSEEEEEEEEEECBSSCTTCC
T ss_pred E--EeCCCCEEEEEEECC-CCeEEEEEeCCCChHHHHhCCCEEEEEEeCCCCC----CCCCeeEEEEecccccCCccccc
Confidence 4 399999999999994 79999999996 37889999999999986432 23588999999999875321
Q ss_pred -----HHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEE
Q 012003 179 -----KLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLV 253 (473)
Q Consensus 179 -----~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~vi 253 (473)
.+.... ...++.++|||+.+..+ ....+++++|++|||||+|++....|.||++||.|+||
T Consensus 309 g~~~~~~~~~~-----~~~~~~~~iNG~~~~~~---------~~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv 374 (447)
T 2dv6_A 309 GEQEMDYEKLI-----NEKPEYFLFNGSVGSLT---------RSHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHV 374 (447)
T ss_dssp EECCBBHHHHH-----TTCCSEEEETTSTTCCC---------CCCCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEE
T ss_pred ccccCChHHhh-----ccCCCEEEECCcccCCC---------CCcceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEE
Confidence 011111 12467899999987432 12579999999999999999987899999999999999
Q ss_pred eecCceeeee--eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCC
Q 012003 254 ETEGSYTVQQ--NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSL 319 (473)
Q Consensus 254 a~DG~~~~p~--~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~ 319 (473)
+.||.++++. .+|++.|.||||++|+|++++ +| .|+|+++...... ....++++|++..
T Consensus 375 ~~dG~~~~~p~~~~dtv~l~pg~r~~i~~~~~~-pG-~~~~hch~~~h~~-----~Gm~~~~~v~~~~ 435 (447)
T 2dv6_A 375 YSLGSVVSPPLIGVQTVSVPPGGATIVDFKIDR-AG-RYILVDHALSRLE-----HGLVGFLNVDGPK 435 (447)
T ss_dssp CGGGCSSSCCEEEESEEEECTTEEEEEEEECCS-CE-EEEEEESSGGGGG-----GTCCEEEEECSCS
T ss_pred EcCCcccCCCcccccEEEECCCcEEEEEEECCC-CE-EEEEEecCcCccc-----cCCEEEEEEeCCC
Confidence 9999988654 589999999999999999996 68 9999998764322 3447899998654
No 31
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=100.00 E-value=3.1e-41 Score=336.96 Aligned_cols=238 Identities=17% Similarity=0.223 Sum_probs=192.5
Q ss_pred CCCeEEEEEEEEEEEecCCCceEE-EEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC
Q 012003 28 GDPYVFYDWTISYVTASPLGDKQQ-VIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN 106 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~~~~dG~~~~-~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq 106 (473)
...+++|+|++++. ++|.... .+.+||++|||+|+|++||+|+|+|+|.++++++|||||+.+. .++||++.+|
T Consensus 45 ~g~~~~~~l~~~~~---~~~~~~~~~~~~ng~~pGP~I~v~~Gd~v~v~~~N~l~~~~sih~HG~~~~--~~~DG~~~t~ 119 (343)
T 3cg8_A 45 GGEVRHLKMYAEKL---ADGQMGYGFEKGKASVPGPLIEVNEGDTLHIEFTNTMDVRASLHVHGLDYE--ISSDGTAMNK 119 (343)
T ss_dssp CCCEEEEEEEEEEC---GGGCEEEESSTTCCBSSCCCEEEETTCEEEEEEEECSSSCBCCEESSSBCC--GGGSCCTTTT
T ss_pred CCeEEEEEEEEEEc---cCCeeeeeeecCCCCccCCEEEEECCCEEEEEEEECCCCCeeEEecCcccC--CcCCCccccc
Confidence 34568999999875 3554322 2235899999999999999999999999999999999999875 6799999889
Q ss_pred cccCCCCceEEEEEECC------------CccceeeccCh------hhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEE
Q 012003 107 CPIPAGWNWTYQFQVKD------------QIGSFFYFPSL------DFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIF 168 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~------------~~Gt~wYH~H~------~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~ 168 (473)
|+|+||++|+|+|++.+ ++|+||||||. ..|+.+||+|+|||+++... ..|+|++|+
T Consensus 120 ~~I~PG~~~~y~f~~~~pg~~~~g~~~~~~~Gt~~YH~h~~~~~~~~~~~~~Gl~G~~iV~~~~~~-----~pd~e~~l~ 194 (343)
T 3cg8_A 120 SDVEPGGTRTYTWRTHKPGRRDDGTWRPGSAGYWHYHDHVVGTEHGTGGIRNGLYGPVIVRRKGDV-----LPDATHTIV 194 (343)
T ss_dssp CSBCTTCEEEEEEECCCCEECTTSCEECCSCEEEEEECSSSSSTTCHHHHHHTCEEEEEEECTTCC-----CCSEEEEEE
T ss_pred ccccCCCEEEEEEEeCCCCcccccccCCCCceEEEEecCccccccchhhhhcCCeEEEEEecCCCC-----CCCceEEEE
Confidence 99999999999999842 35899999996 47899999999999987542 237899998
Q ss_pred EeeceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc
Q 012003 169 ISDWYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH 248 (473)
Q Consensus 169 l~d~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh 248 (473)
++|| +|||+... ..+.++++.||+|||||+|.+. ..|.||||||
T Consensus 195 ~~d~------------------------~iNG~~~~-----------~~~~l~v~~Ge~vri~l~N~g~-~~HpfHlHGh 238 (343)
T 3cg8_A 195 FNDM------------------------TINNRKPH-----------TGPDFEATVGDRVEIVMITHGE-YYHTFHMHGH 238 (343)
T ss_dssp EETT------------------------EETTCCTT-----------CCCCEEEETTCEEEEEEEEESS-CCEEEEETTC
T ss_pred cccc------------------------eecccCCC-----------CCccEEeCCCCEEEEEEEcCCc-cccccEecCc
Confidence 8765 79998752 2378999999999999999997 4899999999
Q ss_pred eeEEEeecCceee----eeeeeEEEEcCCceEEEEEEeC--CCCCcceEEEEeecccCCccCCccceEEEEEecCC
Q 012003 249 NLLLVETEGSYTV----QQNYTNMDIHVGQSFSFLVTTD--QNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNS 318 (473)
Q Consensus 249 ~~~via~DG~~~~----p~~~d~v~l~pGeR~dv~v~~~--~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~ 318 (473)
.|+|++ ||.+.. +..+|++.|.|||+++++++++ +.+| .|++.++...-.. ..-.+.+.+...
T Consensus 239 ~f~v~~-~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~~~~~~pG-~w~~HCHi~~H~~-----~GM~g~~~V~~~ 307 (343)
T 3cg8_A 239 RWADNR-TGILTGPDDPSRVIDNKITGPADSFGFQIIAGEGVGAG-AWMYHCHVQSHSD-----MGMVGLFLVKKP 307 (343)
T ss_dssp CEESSS-SSSCCSTTCCCCEESEEEECTTCEEEEEEETTTTTCSE-EEEEEECSHHHHH-----TTCEEEEEEECT
T ss_pred EEEEec-cCcccCCCCcccceeeEEeCCCCEEEEEEEECCCCCCe-eEEEeCCCHHHHh-----ccCcEEEEEecC
Confidence 999874 675542 3567999999999999999974 3578 8999888642211 234567777654
No 32
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=100.00 E-value=1.7e-41 Score=366.94 Aligned_cols=220 Identities=15% Similarity=0.195 Sum_probs=167.8
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-C--------CcccCCCCceEEEEEECCC--
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-T--------NCPIPAGWNWTYQFQVKDQ-- 124 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-t--------q~~I~PG~~~~Y~f~~~~~-- 124 (473)
++++|||+|++++||+|+|+|+|.|+++++|||||+++. +++||+++ + ||+|+||++|+|+|+++++
T Consensus 63 ~~~~pGP~I~~~~Gd~v~v~~~N~l~~~~siH~HGl~~~--~~~DG~~~~~~~~~~~~~~~~I~PG~~~tY~f~~~~~~g 140 (647)
T 1sdd_B 63 HLGILGPVIRAEVDDVIQVRFKNLASRPYSLHAHGLSYE--KSSEGKTYEDDSPEWFKEDNAIQPNKTYTYVWHATTRSG 140 (647)
T ss_dssp GGTTSCCCEEEETTCEEEEEECCCSSSCBCCEEETCC-----------------------CCBCTTCCEECCEECCTTTS
T ss_pred ccCCcCceEEEeCCCEEEEEEEECCCCceEEecCcceeC--CCCCCccccCCCCcccccCcccCCCCeEEEEEECCcccC
Confidence 347899999999999999999999999999999999874 67999996 6 8999999999999999754
Q ss_pred ---cc----ceeeccChh--hhhcCCeeeEEEEEcCCCCCC--CCCCCCCceEEEEe------eceecchHHHH-HhhhC
Q 012003 125 ---IG----SFFYFPSLD--FQRAAGGYGGIIINNRDVIPL--PFAVPDGDITIFIS------DWYTKSHKKLR-KDVEN 186 (473)
Q Consensus 125 ---~G----t~wYH~H~~--~q~~~Gl~G~liV~~~~~~~~--~~~~~~~e~~l~l~------d~~~~~~~~~~-~~~~~ 186 (473)
+| |||||||.. .|+.+||+|+|||+++..... ..+..++|++|+++ ||+++...... ...+
T Consensus 141 p~~~G~~c~T~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~~~e~~l~l~~~d~~~~w~~~~~~~~~~~~~~- 219 (647)
T 1sdd_B 141 PENPGSACRAWAYYSAVNPEKDIHSGLIGPLLICRKGTLDKETNMPVDMREFVLLFMVFDEKKSWYYDKKPTRSWRRAS- 219 (647)
T ss_dssp CCSSSCSEEEEEEECCSSHHHHHTTTCEEEEEEECTTSSCTTSCCCSSCCEEEEEEEEEEGGGSSCCC------------
T ss_pred CCCCCCCceEEEEccCCCCcccccccCccCEEEeeCCCcccccCCCCcceeEEEEEEeecCccccccccCcccccccCC-
Confidence 57 999999984 799999999999999764221 11234689999999 67665332110 0001
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCc-eeEEEEeCceeEEEeecCceeeeeee
Q 012003 187 GVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIST-SLNFRIQNHNLLLVETEGSYTVQQNY 265 (473)
Q Consensus 187 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~-~~~~~i~gh~~~via~DG~~~~p~~~ 265 (473)
......++.++|||+.+. .+.+++++|++|||||+|++... .|.||+|||.|+||+.||. .+
T Consensus 220 ~~~~~~~~~~~iNG~~~~------------~p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~vi~~d~~-----~~ 282 (647)
T 1sdd_B 220 SEVKNSHEFHAINGMIYN------------LPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLENGTQQH-----QL 282 (647)
T ss_dssp ----CCCEEEEETTBSSC------------CCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEECSSSCE-----EE
T ss_pred cchhhcCceeccCCEecC------------CCCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEEecCCCc-----cc
Confidence 011234688999999851 37899999999999999999764 8999999999999999964 57
Q ss_pred eEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 266 TNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 266 d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|++.|+||||+||+|++++ +| .|.+.++..
T Consensus 283 d~v~l~pg~r~~v~~~~~~-pG-~w~~hch~~ 312 (647)
T 1sdd_B 283 GVWPLLPGSFKTLEMKASK-PG-WWLLDTEVG 312 (647)
T ss_dssp SSEEECTTEEEEEEEECCS-SE-EEEEECCCH
T ss_pred ceEEECCCeEEEEEEEecc-ce-EeecccCcc
Confidence 9999999999999999996 57 888888764
No 33
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=100.00 E-value=1.2e-42 Score=342.62 Aligned_cols=215 Identities=13% Similarity=0.170 Sum_probs=158.4
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCC----CCCCCCCCCCC-C--CcccCCCCceEEEEEEC
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQH----RKNSWQDGVLG-T--NCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~----~~~~~~DGv~~-t--q~~I~PG~~~~Y~f~~~ 122 (473)
+..+++| ++|||+|+|++||+|+|+|+|.++++++|||||++. .+.+++||++. + ||+|+||++|+|+|+++
T Consensus 49 ~~~~~~n-~~pGP~I~v~~Gd~v~v~~~N~l~~~~siH~HGl~~~~~~dG~~~~dg~~~~~~~~~~I~PG~~~~Y~f~~~ 127 (306)
T 1sdd_A 49 KPQSRTS-GLLGPTLYAEVGDIMKVHFKNKAHKPLSIHAQGIKYSKFSEGASYSDHTLPMEKMDDAVAPGQEYTYEWIIS 127 (306)
T ss_dssp CCCCSSC-CSCCCCEEEETTCEEEEEEEECSSSCBCCEEESSCCCTTTSCCCSCCCCCHHHHTTTCBCTTCEEEEEEECC
T ss_pred ccccccC-CccCCEEEEeCCCEEEEEEEECCCCcccEeecceecccccCCCccCCCCcccccCCCccCCCCeEEEEEEeC
Confidence 3445688 689999999999999999999999999999999984 33333444432 2 79999999999999996
Q ss_pred CC---------ccceeeccChhh--hhcCCeeeEEEEEcCCCC---CCCCCCCCCceEEEEeeceecchHHHHHhhhCCC
Q 012003 123 DQ---------IGSFFYFPSLDF--QRAAGGYGGIIINNRDVI---PLPFAVPDGDITIFISDWYTKSHKKLRKDVENGV 188 (473)
Q Consensus 123 ~~---------~Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~---~~~~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~ 188 (473)
++ +||||||||... |+.+||+|+|||+++... +.+. ..|+|++|+++||.... +.
T Consensus 128 ~~~gp~~~d~~~GT~wYHsH~~~~~q~~~GL~G~liV~~~~~~~~~~~~~-~~d~e~~l~~~d~d~~~--------~~-- 196 (306)
T 1sdd_A 128 EHSGPTHDDPPCLTHIYYSYVNLVEDFNSGLIGPLLICKKGTLTEDGTQK-MFEKQHVLMFAVFDESK--------SW-- 196 (306)
T ss_dssp GGGSCCSSSCSEEEEEEECCSSSHHHHHTTCCEEEEEECTTCBCTTSSBS-SSCCCCCCBCCEEETTS--------SS--
T ss_pred CccCCCCCCCCceEEEEeccCCchhhhccCceEEEEEccCCCCCccCCcC-cccceEEEEEEeccccc--------cc--
Confidence 43 379999999765 889999999999987531 1121 35889999999985321 00
Q ss_pred CCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCC-ceeEEEEeCceeEEEeecCceeeeeeeeE
Q 012003 189 DLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQNYTN 267 (473)
Q Consensus 189 ~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~ 267 (473)
....++.++|||+.+. ..|.+++++|+++||||+|++.. ..+.||+|||.|++ ||. .+|+
T Consensus 197 ~~~~~~~~~ING~~~~-----------~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~~---dG~-----~~dt 257 (306)
T 1sdd_A 197 NQTSSLMYTVNGYVNG-----------TMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLEQ---NHH-----KISA 257 (306)
T ss_dssp SCCCCEEECSSSCCSS-----------CCCCCCCCCC------BBCCCSSSCEECCBCSSTTCEE---TTE-----ECSC
T ss_pred ccCCCcceeeCCEecC-----------CCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEeee---CCE-----Ecce
Confidence 0123578999999862 23779999999999999999986 57889999999875 884 3799
Q ss_pred EEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 268 MDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 268 v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
+.|.||||+||++++++ +| .|++.++..
T Consensus 258 v~l~pger~~v~~~~~~-pG-~~~~hch~~ 285 (306)
T 1sdd_A 258 ITLVSATSTTANMTVSP-EG-RWTIASLIP 285 (306)
T ss_dssp CCEETTCCBC---------C-CCCCBCCST
T ss_pred EEECCCcEEEEEEEcCC-Ce-EEEEEeCCh
Confidence 99999999999999985 68 898887754
No 34
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=100.00 E-value=9.6e-42 Score=371.58 Aligned_cols=248 Identities=12% Similarity=0.142 Sum_probs=194.1
Q ss_pred CCCeEEEEEEEEEEE--ecCCCc----------------eEEEE-EE-----cC-----------CCCCceEEEecCCEE
Q 012003 28 GDPYVFYDWTISYVT--ASPLGD----------------KQQVI-GI-----NG-----------QFPGPILNVTTNWNV 72 (473)
Q Consensus 28 ~~~~~~~~l~~~~~~--~~~dG~----------------~~~~~-~~-----Ng-----------~~pgP~i~v~~Gd~v 72 (473)
...+|+|.|.+++.. .+|+|. .+-++ .| ++ ++|||+||+++||+|
T Consensus 130 ~g~~r~y~i~a~e~~wdyap~~~~~~~~~~~~~~~g~~y~k~~~~~y~~~~f~~~~~~~~~~~~l~~pGP~Ir~~~GD~v 209 (770)
T 2r7e_B 130 QKKTRHYFIAAVERLWDYGMSSSPHVLRNRAQSGSVPQFKKVVFQEFTDGSFTQPLYRGELNEHLGLLGPYIRAEVEDNI 209 (770)
T ss_dssp CCCCEEEEEEEEECCCCCCSCCCCTTTTSSCCCCCCCCCCCEEEEECSSSCTTTTCCCCSTTTTCCSCCCCCCCCSSSCE
T ss_pred CCCEEEEEEEEEEEEEeecCCCcccccccccccccccceeeEEEEEeccCceeccccccccccccCCCCCeEEEEcCCEE
Confidence 456899999999986 567653 22233 23 33 689999999999999
Q ss_pred EEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECC---------CccceeeccChhh--hhcCC
Q 012003 73 VVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKD---------QIGSFFYFPSLDF--QRAAG 141 (473)
Q Consensus 73 ~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~---------~~Gt~wYH~H~~~--q~~~G 141 (473)
+|+|+|.++++++|||||+++..... ||++++||+|+||++|+|+|++++ ++||||||||... |+.+|
T Consensus 210 ~v~~~N~l~~~~siH~HG~~~~~~~~-dG~~~~~~~I~PG~~~tY~f~~~~~~gp~~~d~~~Gt~wYHsh~~~~~q~~~G 288 (770)
T 2r7e_B 210 MVTFRNQASRPYSFYSSLISYEEDQR-QGAEPRKNFVKPNETKTYFWKVQHHMAPTKDEFDCKAWAYSSDVDLEKDVHSG 288 (770)
T ss_dssp EEEEECCSSSCCCCCBTTCCCCCCSS-SCTTTTSSCCCSSCEEEEECCCCSSSSCCSSCCSEEEEEECCCSSSSHHHHTS
T ss_pred EEEEEECCCCCcceeecccccccccC-CCCcCccCccCCCCeEEEEEEecCccCCccCCCCCeeEEeeccCCcHHHHhCC
Confidence 99999999999999999999876543 599889999999999999999974 7999999999875 89999
Q ss_pred eeeEEEEEcCCCCCC--CCCCCCCceEEEEee------ceecchHHHHHhhhCCCC--------CCCCCeEEEcCCCCCC
Q 012003 142 GYGGIIINNRDVIPL--PFAVPDGDITIFISD------WYTKSHKKLRKDVENGVD--------LGVPDGILINGLGPYR 205 (473)
Q Consensus 142 l~G~liV~~~~~~~~--~~~~~~~e~~l~l~d------~~~~~~~~~~~~~~~~~~--------~~~~~~~liNG~~~~~ 205 (473)
|+|+|||+++..... .....++|++|++++ |+++.. +..+...... ....+.++|||+.+
T Consensus 289 L~G~liV~~~~~~~~~~~~~~~d~E~vl~~~~~de~~swy~~~~--~~~~~~~p~~~~~~d~~~~~~~~~~~ING~~~-- 364 (770)
T 2r7e_B 289 LIGPLLVCHTNTLNPAHGRQVTVQEFALFFTIFDETKSWYFTEN--MERNCRAPCNIQMEDPTFKENYRFHAINGYIM-- 364 (770)
T ss_dssp CCEEEEEECSTTSCSSSCCCCSSEEEECCCCEECCSSSSCTTGG--GSSCSCCSSCCCSSSSSSTTTSCEECTTSCTT--
T ss_pred ceeeEEECCCcccccccCCCccceEEEEEEeecCccccchhccc--hhhcccCccccccCCccccccCCccccCCccC--
Confidence 999999999764321 112457899888754 444321 1111100000 01235689999985
Q ss_pred CCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCC-ceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCC
Q 012003 206 YDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQ 284 (473)
Q Consensus 206 ~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~ 284 (473)
+..+.+++++|++|||||+|++.. ..|.||||||.|+|++.||. .+|++.|.||||++|+|++++
T Consensus 365 ---------~~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~Vv~~dg~-----~~Dtv~l~Pg~~~~v~~~ad~ 430 (770)
T 2r7e_B 365 ---------DTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTVRKKEEY-----KMALYNLYPGVFETVEMLPSK 430 (770)
T ss_dssp ---------TTCCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEECCSSSCC-----EESEEECCTTCCCEEEECCSS
T ss_pred ---------CCCCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEEEecCCc-----eeeEEEECCCeEEEEEEEeCC
Confidence 124778999999999999999865 47999999999999999985 589999999999999999996
Q ss_pred CCCcceEEEEee
Q 012003 285 NASSDYYIVASP 296 (473)
Q Consensus 285 ~~g~~y~i~~~~ 296 (473)
+| .|.+.++.
T Consensus 431 -pG-~w~~hcH~ 440 (770)
T 2r7e_B 431 -AG-IWRVECLI 440 (770)
T ss_dssp -CB-CCCBCCCS
T ss_pred -CC-ceEEEecc
Confidence 67 88887765
No 35
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=1.1e-41 Score=370.45 Aligned_cols=239 Identities=13% Similarity=0.176 Sum_probs=179.1
Q ss_pred EEEEEEEEecC-CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCC----CCCCCCCCC---CCC
Q 012003 35 DWTISYVTASP-LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHR----KNSWQDGVL---GTN 106 (473)
Q Consensus 35 ~l~~~~~~~~~-dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~----~~~~~DGv~---~tq 106 (473)
.+.++++.... .|+.+..|+ ++|||+||+++||+|+|+|+|.|++++||||||+++. +.+++||++ .||
T Consensus 50 ~l~~~~~~~~~~~~~~~~~~~---~~pGP~Ir~~~GD~v~V~v~N~l~~~tsIHwHGl~~~~~~DG~p~~Dg~~~~~vtq 126 (742)
T 2r7e_A 50 TLFVEFTDHLFNIAKPRPPWM---GLLGPTIQAEVYDTVVITLKNMASHPVSLHAVGVSYWKASEGAEYDDQTSQREKED 126 (742)
T ss_dssp CCCCCCSSSCCCCSSCSTTTT---TTSEEEEEECSEEEEECCEECCSSSCCCCCCSSSCCCSSSSCCCSSCSCCSSSSSS
T ss_pred EEEEEecceEEECCccccccc---CCcCCeEEEECCCEEEEEEEECCCCCEeEEecCcccCccccCCccCCCCccccccc
Confidence 44444444444 266666664 9999999999999999999999999999999999874 344455554 379
Q ss_pred cccCCCCceEEEEEECC---------CccceeeccChhh--hhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEee----
Q 012003 107 CPIPAGWNWTYQFQVKD---------QIGSFFYFPSLDF--QRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISD---- 171 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~---------~~Gt~wYH~H~~~--q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d---- 171 (473)
|+|+||++|+|+|++++ ++||||||||.+. |+.+||+|+|||+++...........+|++|++++
T Consensus 127 ~~I~PG~s~tY~f~v~~~~gP~~~d~~~GT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~e~~l~~~~~de~ 206 (742)
T 2r7e_A 127 DKVFPGGSHTYVWQVLKENGPMASDPLCLTYSYLSHVDLVKDLNSGLIGALLVCREGSLAKEKTQTLHKFILLFAVFDEG 206 (742)
T ss_dssp SSCCTTCEECCEEEECGGGSCCSSSCSSCCEEECCCSCSHHHHHHHCCEEEEECSSSCTTTTTTTCCCEECCCEECCCCS
T ss_pred CcCCCCCeEEEEEEeccccCCCcCCCCcEEEEEccCCChHHHhhCCcEEEEEEecCcccCcccCceeeEEEEEeecccCC
Confidence 99999999999999853 3699999999875 89999999999999765322111224888888865
Q ss_pred --ceecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCc-eeEEEEeCc
Q 012003 172 --WYTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIST-SLNFRIQNH 248 (473)
Q Consensus 172 --~~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~-~~~~~i~gh 248 (473)
|+++........+........++.++|||+.. +..+.+++++|++|||||+|++... .|.|||+||
T Consensus 207 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~ING~~~-----------~~~~~l~v~~Ge~vrlrliN~g~~~~~h~~hlhGh 275 (742)
T 2r7e_A 207 KSWHSETKNSLMQDRDAASARAWPKMHTVNGYVN-----------RSLPGLIGCHRKSVYWHVIGMGTTPEVHSIFLEGH 275 (742)
T ss_dssp SSSCCCCCC-------CCSCCCCCCCCEETTBCT-----------BCCCCCEECSSSCEEEECCCCCSSSCCCCCCCTTC
T ss_pred ccccccccccccccCCCccccccCceEEECCccC-----------CCCcceEEcCCCEEEEEEEeCCCCCcceEEEECCC
Confidence 44432111000011111112356789999985 1246799999999999999999765 799999999
Q ss_pred eeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 249 NLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 249 ~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.|+|++. .+|++.|.|||+++|++++++ +| .|++.++..
T Consensus 276 ~f~Vvg~--------~~Dtv~v~Pg~~~~v~~~~~~-pG-~w~~hCH~~ 314 (742)
T 2r7e_A 276 TFLVRNH--------RQASLEISPITFLTAQTLLMD-LG-QFLLFCHIS 314 (742)
T ss_dssp CCEETTE--------ECCSCCCCTTCCCEEEECCCS-CS-EECCCCCSS
T ss_pred EEEEEeE--------ecceEEeCCCcEEEEEEEeCC-Ce-eEEEEeCCh
Confidence 9999853 368899999999999999996 68 888887765
No 36
>2dv6_A Nitrite reductase; electron transfer, reduction, denitrification, oxidoreductase; 2.20A {Hyphomicrobium denitrificans}
Probab=100.00 E-value=7.2e-38 Score=324.97 Aligned_cols=343 Identities=17% Similarity=0.077 Sum_probs=215.5
Q ss_pred cCCCeEEEEEEEEEEEecCCCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC
Q 012003 27 GGDPYVFYDWTISYVTASPLGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN 106 (473)
Q Consensus 27 a~~~~~~~~l~~~~~~~~~dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq 106 (473)
+.+.++++.++++......+| .+++|||++ ||+|+|++||+|+|+|+|.+...+++||||... .++
T Consensus 24 ~~~~~~~~~~~~~~~~~~f~g---~~~~vNG~~-~p~i~v~~Gd~v~~~~~N~~~~~h~~~~~g~~~----------~~~ 89 (447)
T 2dv6_A 24 HAPVVFTLRTGIAEGRMVYIG---VGGDIDHKI-NPTLVVHEGETVQVNLVNGEGAQHDVVVDQYAA----------RSA 89 (447)
T ss_dssp CCCEEEEEEEEEETTEEEEEE---ESGGGTTCB-SCCEEEETTCEEEEEEECSSSSCBCCEETTTTE----------ECC
T ss_pred CCCceEEEEEEecccEEEEec---cceeecCCc-CCeEEEcCCCEEEEEEEcCCCCceEEEEccCCc----------ccc
Confidence 334456666666554444444 456999999 999999999999999999998889999999732 147
Q ss_pred cccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCC--CC---CCCCceEEEEeeceecchHH--
Q 012003 107 CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLP--FA---VPDGDITIFISDWYTKSHKK-- 179 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~--~~---~~~~e~~l~l~d~~~~~~~~-- 179 (473)
|+|+||++++|+|++. ++||||||||...|+.+||+|.|+|+++...... +. ....++...+ |+.......
T Consensus 90 ~~i~pG~~~~~~f~~~-~~Gt~~y~~~~~~h~~~Gm~G~i~V~~~~~~~~~~~~~~~~~~~~~~p~~~-d~~~~~~~~~~ 167 (447)
T 2dv6_A 90 IVNGKNASSTFSFVAS-KVGEFNYYCSIAGHRQAGMEGNIQVLPGNRAEMKSSGADITRDPADLPGPI-GPRQAKTVRID 167 (447)
T ss_dssp CBCSTTBEEEEEEECC-SCEEEEEECCSTTHHHHTCEEEEEEESSCCCCCCCSSBCCBCCTTCSCCCC-CSCCCCEEEEE
T ss_pred eecCCCCeEEEEEEcC-CCEEEEEEeCCCChhhCCCEEEEEEeCCccccCCCcchhhccChhhcCCcc-ccCCCcEEEEE
Confidence 9999999999999995 6999999999988999999999999986542210 00 0001111100 110000000
Q ss_pred HH-HhhhCCC-CCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCC-CceeEEEEeCceeEEEeec
Q 012003 180 LR-KDVENGV-DLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGI-STSLNFRIQNHNLLLVETE 256 (473)
Q Consensus 180 ~~-~~~~~~~-~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~-~~~~~~~i~gh~~~via~D 256 (473)
+. ....... .....+.++|||+.- .|++++++|++|||||+|.+. ...+.+++||. ++.|
T Consensus 168 l~~~~~~~~~~~g~~~~~~~~NG~~p-------------gp~i~v~~G~~v~~rl~N~~~~~~~~~ih~Hg~----~~~D 230 (447)
T 2dv6_A 168 LETVEVKGQLDDNTTYTYWTFNGKVP-------------GPFLRVRVGDTVELHLKNHKDSLMVHSVDFHGA----TGPG 230 (447)
T ss_dssp EEEEEEEEEEETTEEEEEEEETTBBS-------------CCCEEEETTCEEEEEEEECTTCSSCBCCEETTC----CSGG
T ss_pred EEEEEEEEeccCCceeEEEEECCccC-------------CCeEEecCCCEEEEEEEeCCCCceeEEEeeccc----cCCC
Confidence 00 0000000 011235789999852 288999999999999999985 34677788774 3689
Q ss_pred CceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcc
Q 012003 257 GSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTY 336 (473)
Q Consensus 257 G~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~ 336 (473)
|.+ +.+.|.||||+++++++++ +| +||++++...... .......+.|.|..+. .+|. ++.+
T Consensus 231 G~~------~~~~i~pG~~~~~~~~~~~-~G-~~~yh~h~~~~~~--~~~~Gl~g~l~v~~~~-----~~P~----~d~~ 291 (447)
T 2dv6_A 231 GAA------AFTQTDPGEETVVTFKALI-PG-IYVYHCATPSVPT--HITNGMYGLLLVEPEG-----GLPQ----VDRE 291 (447)
T ss_dssp GGG------GGCCBCTTCEEEEEEECCS-CE-EEEEECCSSSHHH--HHHTTCEEEEEEECTT-----CSCC----CSEE
T ss_pred CCC------ccEEeCCCCEEEEEEECCC-Ce-EEEEEeCCCChHH--HHhCCCEEEEEEeCCC-----CCCC----CCee
Confidence 974 3346999999999999996 58 9999987531100 0012335677776432 1221 1111
Q ss_pred cccccccccccccCCCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccc
Q 012003 337 FSMNQARSIRWNVSAGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYK 416 (473)
Q Consensus 337 ~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~ 416 (473)
..+.. .+.. ... . ....+ .. .+..... .......|.|||++|....
T Consensus 292 ~~~~~-~~~~--~~~-~--~~~~g-------~~----~~~~~~~-~~~~~~~~~iNG~~~~~~~---------------- 337 (447)
T 2dv6_A 292 FYVMQ-GEIY--TVK-S--FGTSG-------EQ----EMDYEKL-INEKPEYFLFNGSVGSLTR---------------- 337 (447)
T ss_dssp EEEEE-EEEC--BSS-C--TTCCE-------EC----CBBHHHH-HTTCCSEEEETTSTTCCCC----------------
T ss_pred EEEEe-cccc--cCC-c--ccccc-------cc----cCChHHh-hccCCCEEEECCcccCCCC----------------
Confidence 11100 0000 000 0 00000 00 0000000 0011246899999873110
Q ss_pred cCCCCCCCCCCCccceEEEeecCCcEEEEEEecCC-CCCCceeecCCccEEEeec
Q 012003 417 LDFPYKLMSRAPKVDTSLINGTYKGFMEIIFQNND-TTVQSYHMDGYAFFVVGWQ 470 (473)
Q Consensus 417 ~~~~~~p~~~~~~~~~~~~~~~~g~~Veivl~N~~-~~~HP~HLHGh~F~Vl~~g 470 (473)
..++.++.|++|+|+|.|.+ ...||||||||+|+||+++
T Consensus 338 ---------------~~~~~v~~g~~vrlrliN~~~~~~h~~hlhGh~f~vv~~d 377 (447)
T 2dv6_A 338 ---------------SHPLYASVGETVRIFFGVGGPNFTSSFHVIGEIFDHVYSL 377 (447)
T ss_dssp ---------------CCCEEECTTCEEEEEEEEEESSCCEEEEEETCCEEEECGG
T ss_pred ---------------CcceEECCCCEEEEEEEeCCCCceEeEEEcCcEEEEEEcC
Confidence 12367889999999999976 5689999999999999974
No 37
>2r7e_A Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_A*
Probab=100.00 E-value=3.9e-37 Score=334.80 Aligned_cols=215 Identities=14% Similarity=0.163 Sum_probs=167.0
Q ss_pred CCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCC-----CCC-CCcccCCCCceEEEEEECCCcc-----
Q 012003 58 QFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDG-----VLG-TNCPIPAGWNWTYQFQVKDQIG----- 126 (473)
Q Consensus 58 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG-----v~~-tq~~I~PG~~~~Y~f~~~~~~G----- 126 (473)
.+|||+||+++||+|+|+|+|.++++++|||||+++. .+++|| ++. +||+|+||++|+|+|++++++|
T Consensus 448 g~pGP~Ir~~~GD~v~v~~~N~l~~~~siHwHGl~~~-~~~~DG~~~~G~~~~~~~~I~PG~t~tY~f~~~~~agPg~~d 526 (742)
T 2r7e_A 448 GILGPLLYGEVGDTLLIIFKNQASRPYNIYPHGITDV-RPLYSRRLPKGVKHLKDFPILPGEIFKYKWTVTVEDGPTKSD 526 (742)
T ss_dssp CSCCCCCCCBTTCEEECCEECCSSSCBCCEETTCSEE-CCTTCSCCSSSCSSTTTSCCBSSCEECCEEECCSTTSCCSSS
T ss_pred CCCCCeEEEECCCEEEEEEEeCCCCCcCEEecccccC-CcccccccCCCCcccccccCCCCCeEEEEEEeccccCCcccC
Confidence 5899999999999999999999999999999999874 566665 555 7999999999999999975554
Q ss_pred ----ceeeccChh--hhhcCCeeeEEEEEcCCCCC-CC-CCCCCCceEEEEeec------eecchHHHHHhhhCCCCC--
Q 012003 127 ----SFFYFPSLD--FQRAAGGYGGIIINNRDVIP-LP-FAVPDGDITIFISDW------YTKSHKKLRKDVENGVDL-- 190 (473)
Q Consensus 127 ----t~wYH~H~~--~q~~~Gl~G~liV~~~~~~~-~~-~~~~~~e~~l~l~d~------~~~~~~~~~~~~~~~~~~-- 190 (473)
|||||||.. .|+.+||+|+|||+++.... .. ....|+|++|++++| ++. ..+..+.......
T Consensus 527 ~~~gT~wYHsH~~~~~q~~~GL~G~lIV~~~~~~~~~~~~~~~d~E~~l~~~~fde~~~wy~~--~~~~~~~~~p~~v~~ 604 (742)
T 2r7e_A 527 PRCLTRYYSSFVNMERDLASGLIGPLLICYKESVDQRGNQIMSDKRNVILFSVFDENRSWYLT--ENIQRFLPNPAGVQL 604 (742)
T ss_dssp CSCCCCEEECCSSSSSTGGGSCCEECCCBCCCSCCCCCCSSCCSCCCEEEECBCCGGGSSCSH--HHHHHHSSSSSCSCC
T ss_pred CCceEEEEecCcchhhhhhccceeeEEEcCccccccccCcCCCCceEEEEeeccccccccccc--cchhhcccCchhccc
Confidence 999999986 46899999999999875321 11 124589999999754 332 1122221100000
Q ss_pred C------CCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCC-ceeEEEEeCceeEEEeecCceeeee
Q 012003 191 G------VPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS-TSLNFRIQNHNLLLVETEGSYTVQQ 263 (473)
Q Consensus 191 ~------~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~-~~~~~~i~gh~~~via~DG~~~~p~ 263 (473)
. ....++|||+.+. ..+ +++++||+|||||+|+|.. ..|.|||+||.|+|+ +.
T Consensus 605 ~~~~~~~~~~~~~ING~~~~-----------~~~-l~v~~Ge~vr~rliN~g~~~~~h~~HlhGh~f~v~--------~~ 664 (742)
T 2r7e_A 605 EDPEFQASNIMHSINGYVFD-----------SLQ-LSVCLHEVAYWYILSIGAQTDFLSVFFSGYTFKHK--------MV 664 (742)
T ss_dssp CCHHHHGGGCCBCTTTTCSS-----------CCC-CCCCSSCCCEEEEEECSSCCCCCCCEESSSCCCCB--------SS
T ss_pred ccccccccCceeeecCcCCC-----------CCc-EEEeCCCEEEEEEEeCCCCcceEEEEEcCcEEEEe--------cc
Confidence 0 0124789999861 123 8999999999999998764 468999999999987 35
Q ss_pred eeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 264 NYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 264 ~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.+|++.|.||||++|+|++++ +| .|.+.++..
T Consensus 665 ~~Dtv~l~Pg~~~~v~~~ad~-pG-~w~~hcH~~ 696 (742)
T 2r7e_A 665 YEDTLTLFPFSGETVFMSMEN-PG-LWILGCHNS 696 (742)
T ss_dssp SBCSSCCCCCSSEECCEECCC-CC-CSCCEECCC
T ss_pred ceeEEEECCCcEEEEEEEcCC-Ce-EEEEEeCCc
Confidence 689999999999999999995 68 899988875
No 38
>2j5w_A Ceruloplasmin, ferroxidase; oxidoreductase, plasma protein, copper transport, copper, transport, polymorphism, glycoprotein, multi-copper oxidase; HET: NAG; 2.80A {Homo sapiens} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1kcw_A*
Probab=100.00 E-value=2.2e-34 Score=325.37 Aligned_cols=204 Identities=15% Similarity=0.124 Sum_probs=164.4
Q ss_pred ceEEEEEEcCCCCC--ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCC-CCCCCCCCC-CCcccCCCCceEEEEEECC
Q 012003 48 DKQQVIGINGQFPG--PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRK-NSWQDGVLG-TNCPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 48 ~~~~~~~~Ng~~pg--P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~ 123 (473)
..+.+.++||++|| |+|++++||+|+|+|.|. .+.+||||+++.+ +.++||++. | |+|.||.+++|+|++ +
T Consensus 616 ~~~~~~~iNG~~~g~~P~l~~~~gd~v~~~v~~~---g~~~~~Hgl~~~g~t~~~dG~~~~t-~~i~pg~~~t~~~~~-~ 690 (1065)
T 2j5w_A 616 ESNKMHSMNGFMYGNQPGLTMCKGDSVVWYLFSA---GNEADVHGIYFSGNTYLWRGERRDT-ANLFPQTSLTLHMWP-D 690 (1065)
T ss_dssp HHTEEEEETTBCTTCCCCCEEETTCCEEEEEECC---CSTTCCEEEEETTCCEEETTEEESE-EEECTTCEEEEEECC-C
T ss_pred ccceEEEEeeEecCCCCceEEeCCCEEEEEEEcC---CCcceEEeeEEeCCceeecCeecce-EeecCCceEEEEEec-C
Confidence 57899999999999 889999999999999975 5669999999988 899999997 7 999999999999999 5
Q ss_pred CccceeeccChhhhhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEE----eeceecchHHHHHh-hhCCCCCCCCCeEEE
Q 012003 124 QIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPFAVPDGDITIFI----SDWYTKSHKKLRKD-VENGVDLGVPDGILI 198 (473)
Q Consensus 124 ~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l----~d~~~~~~~~~~~~-~~~~~~~~~~~~~li 198 (473)
++||||||||++.|+.+||+|.++|++......+...++.|.++.+ .||++.....+... .+... ..|..+++
T Consensus 691 ~~Gt~~~h~h~~~~~~~Gm~g~~~V~~~~~~~~~~~~yd~e~~~~iaa~~~dW~~~~~~~~~~~~~~~~~--~~p~~~~~ 768 (1065)
T 2j5w_A 691 TEGTFNVECLTTDHYTGGMKQKYTVNQCRRQSEDSTFYLGERTYYIAAVEVEWDYSPQREWEKELHHLQE--QNVSNAFL 768 (1065)
T ss_dssp SCEEEEEEECSHHHHHTTCEEEEEEECCSCCCSCCCCCSEEEEEEEEEEEEEEESCSCCHHHHHHHHHHT--CCCCCTTT
T ss_pred CCeEEEEecCCCcccCCCcEEEEEEcCCccccCCccCCCcceEEEEeeeeccccCCcchhhhhhccCCCc--cCccceee
Confidence 8999999999999999999999999987543333235578899999 89999866544321 11111 12666778
Q ss_pred cCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEE----------EeecCceeeeeeeeEE
Q 012003 199 NGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL----------VETEGSYTVQQNYTNM 268 (473)
Q Consensus 199 NG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v----------ia~DG~~~~p~~~d~v 268 (473)
|+... - + |++|++ ..-+.+.+|+|++ +++|| ..|
T Consensus 769 n~~~~--------------~-i----G~tY~k---------~~y~~~~d~tft~~~~r~~~~~~v~~pG--------P~I 812 (1065)
T 2j5w_A 769 DKGEF--------------Y-I----GSKYKK---------VVYRQYTDSTFRVPVERKAEEEHLGILG--------PQL 812 (1065)
T ss_dssp CCTTT--------------C-C----CSEEEE---------EEEEEESSTTCCSBCCCCGGGGGGTTSC--------CCE
T ss_pred cCCCc--------------c-c----cceEee---------eEEEEEcCCcceecccCCccccccCCCC--------CEE
Confidence 87653 1 2 999988 3456789999988 56666 479
Q ss_pred EEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 269 DIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 269 ~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
.+.+|||++|.++-+ .+. .|.|..+.
T Consensus 813 ~v~~Gd~v~v~l~N~-~~~-~~sih~HG 838 (1065)
T 2j5w_A 813 HADVGDKVKIIFKNM-ATR-PYSIHAHG 838 (1065)
T ss_dssp EEETTEEEEEEEEEC-SSS-CBCCEESS
T ss_pred EEecCCEEEEEEEeC-CCC-CceEeecc
Confidence 999999999999865 445 78887765
No 39
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=99.67 E-value=1.1e-17 Score=137.74 Aligned_cols=90 Identities=19% Similarity=0.209 Sum_probs=71.4
Q ss_pred CCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCC--CCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh
Q 012003 57 GQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKN--SWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL 134 (473)
Q Consensus 57 g~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~--~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~ 134 (473)
-+|++|+|++++||+|+ ++|..+.++++||||..+... ..+||...+++.|.||++++|+|++++++|+||||||
T Consensus 14 ~~f~p~~i~v~~Gd~V~--~~N~~~~~H~v~~~~~~~~~~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G~y~y~C~- 90 (105)
T 3cvb_A 14 FQFEPANVTVHPGDTVK--WVNNKLPPHNILFDDKQVPGASKELADKLSHSQLMFSPGESYEITFSSDFPAGTYTYYCA- 90 (105)
T ss_dssp SCEESSEEEECTTEEEE--EEECSSCCEEEEECTTSSGGGCHHHHHHHCEEEEECSTTCEEEEEECTTSCSEEEEEECT-
T ss_pred cEEeCCEEEEcCCCEEE--EEECCCCCCeEEEeCCCCCcccccccccccccccccCCCCeEEEEEecCCCCeeEEEEeC-
Confidence 36778999999999975 679988999999999865321 0122222245789999999999998557999999999
Q ss_pred hhhhcCCeeeEEEEEc
Q 012003 135 DFQRAAGGYGGIIINN 150 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~~ 150 (473)
.|..+||.|.|+|++
T Consensus 91 -~H~~~GM~G~i~V~~ 105 (105)
T 3cvb_A 91 -PHRGAGMVGKITVEG 105 (105)
T ss_dssp -TTGGGTCEEEEEECC
T ss_pred -CchhcCCEEEEEEcC
Confidence 577889999999964
No 40
>2uxt_A Protein SUFI, SUFI; oxidoreductase, periplasmic, cupredoxin-like, FTS mutant suppressor; 1.90A {Escherichia coli} PDB: 2uxv_A
Probab=99.64 E-value=1.4e-14 Score=149.70 Aligned_cols=237 Identities=14% Similarity=0.063 Sum_probs=151.2
Q ss_pred eEEEEEEEEEEEecCCC-----------ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee-CCCCCCCCC
Q 012003 31 YVFYDWTISYVTASPLG-----------DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKNS 97 (473)
Q Consensus 31 ~~~~~l~~~~~~~~~dG-----------~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~~ 97 (473)
.+++.|.++.-....+| .....+++||+. .|+|+|++| ++++||.|... ....+|+ ||..+.. .
T Consensus 152 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~~~~d~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~dg~~~~v-i 228 (451)
T 2uxt_A 152 VDDFPVIIQDKRLDNFGTPEYNEPGSGGFVGDTLLVNGVQ-SPYVEVSRG-WVRLRLLNASNSRRYQLQMNDGRPLHV-I 228 (451)
T ss_dssp TTEEEEEEEEEEECTTSCEECCCCSSSCCCCSEEEETTEE-SCEEEECSS-EEEEEEEECCSSCCEEEEETTSCCEEE-E
T ss_pred CceEEEEEEeeecCCCCceecccccCCCCcCCEEEECCcc-cceEEecCC-EEEEEEEccCCceeEEEEECCCCeEEE-E
Confidence 35677777766554443 334689999996 599999999 99999999975 4678999 8976542 4
Q ss_pred CCCCCC----C--CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCeee-----------E-EEEEcCCCCCCCCC
Q 012003 98 WQDGVL----G--TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYG-----------G-IIINNRDVIPLPFA 159 (473)
Q Consensus 98 ~~DGv~----~--tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G-----------~-liV~~~~~~~~~~~ 159 (473)
+.||.+ . .+..|.|||+++..++++ +.|+||++++........+.| + +-+........+
T Consensus 229 ~~DG~~~~~P~~~~~l~l~pgeR~dvlv~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~-- 305 (451)
T 2uxt_A 229 SGDQGFLPAPVSVKQLSLAPGERREILVDMS-NGDEVSITCGEAASIVDRIRGFFEPSSILVSTLVLTLRPTGLLPLV-- 305 (451)
T ss_dssp ECSSSEEEEEEEESSEEECTTCEEEEEEECT-TCCCEEEEC----------------CCCCSCCEEEEEEECSCCC----
T ss_pred EeCCCccCCceEeceEEECceeEEEEEEEeC-CCCEEEEEecCccccccccccccccCCCCCCcceEEEEecCCCcCc--
Confidence 589963 2 457799999999999995 689999999865332211111 1 111111100000
Q ss_pred CCCCceEEEEeeceecch-HHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCC
Q 012003 160 VPDGDITIFISDWYTKSH-KKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGIS 238 (473)
Q Consensus 160 ~~~~e~~l~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~ 238 (473)
..+....|..+..... ......+... ..++|||+.+.. ..+.+.++.|++++|+|+|.
T Consensus 306 --~~~~p~~L~~~~~~~~~~~~~~~~~l~------~~~~iNg~~f~~----------~~~~~~~~~G~~~~~~l~N~--- 364 (451)
T 2uxt_A 306 --TDSLPMRLLPTEIMAGSPIRSRDISLG------DDPGINGQLWDV----------NRIDVTAQQGTWERWTVRAD--- 364 (451)
T ss_dssp ----CCCSCSSSSCCCCCCCSEEEEEEEC------SSSSBTTBCCCT----------TCCCEEEETTCEEEEEEEEE---
T ss_pred --cccCccccCCCCCCCCCCcceEEEEEe------eEEEECCEeCCC----------CCCcEEcCCCCEEEEEEECC---
Confidence 0000000000000000 0000000000 046799998621 23568999999999999997
Q ss_pred ceeEEEEeCceeEEEeecCcee---eeeeeeEEEEcCCceEEEEEEeCCCCC---cceEEEEeec
Q 012003 239 TSLNFRIQNHNLLLVETEGSYT---VQQNYTNMDIHVGQSFSFLVTTDQNAS---SDYYIVASPR 297 (473)
Q Consensus 239 ~~~~~~i~gh~~~via~DG~~~---~p~~~d~v~l~pGeR~dv~v~~~~~~g---~~y~i~~~~~ 297 (473)
..|.||||||.|+|++.||... +|...|++.+ |+++.|.++++++ | +.|.+.++..
T Consensus 365 ~~HP~HLHGh~F~Vl~~~G~~~~~~~p~~rDTv~v--g~~~~i~~~~dnp-g~~~g~w~~HCHil 426 (451)
T 2uxt_A 365 EPQAFHIEGVMFQIRNVNGAMPFPEDRGWKDTVWV--DGQVELLVYFGQP-SWAHFPFYFNSQTL 426 (451)
T ss_dssp EEEEEEETTCEEEEEEETTBCCCGGGSSCBSEEEE--EEEEEEEEECCSC-CBTTBCEEEEESSH
T ss_pred CCcCeEECCceEEEEeeCCcCCCcccCCCccEEEE--CCEEEEEEEeCCC-CCCCCceEEeCCch
Confidence 4799999999999999999875 3678899999 9999999999863 4 1388888764
No 41
>3kw8_A Laccase, putative copper oxidase; two-domain laccase, oxidoreductase, multicopper blue protein; HET: PG4 PGE; 2.29A {Streptomyces coelicolor} PDB: 4gxf_A* 4gy4_A*
Probab=99.64 E-value=7.3e-16 Score=149.05 Aligned_cols=99 Identities=17% Similarity=0.226 Sum_probs=85.1
Q ss_pred EEEcCCC--CCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC--------C-CCcccCCCCceEEEEEE
Q 012003 53 IGINGQF--PGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL--------G-TNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 53 ~~~Ng~~--pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~--------~-tq~~I~PG~~~~Y~f~~ 121 (473)
|+|||+. ++|.|++++||+|+++|.|.....+++||||..+... .+|.. . ..+.|.||++++|.|++
T Consensus 157 ~~iNG~~~~~~p~i~v~~G~~vri~l~N~~~~~Hp~HlHG~~f~v~--~~G~~~~p~~~~~~~Dtv~v~pg~~~~~~~~~ 234 (276)
T 3kw8_A 157 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIA 234 (276)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEET
T ss_pred cccceecccCCCCEEEecCCEEEEEEecCCCcceeEEEccceeEEe--ccCccCCCcccccCCccEEeCCCceEEEEEEe
Confidence 6999998 8999999999999999999988999999999865432 34421 1 34679999999999998
Q ss_pred CC--CccceeeccChhhhhcCCeeeEEEEEcCCC
Q 012003 122 KD--QIGSFFYFPSLDFQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 122 ~~--~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 153 (473)
.+ .+|+||||||...|...||.|.|+|++++.
T Consensus 235 ~~~~npG~w~~HCH~~~H~~~GM~g~~~V~~~~~ 268 (276)
T 3kw8_A 235 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 268 (276)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred ccCCCCCeEEEECCCchHhhCCCeEEEEEeCCCC
Confidence 42 599999999999999999999999999765
No 42
>2xu9_A Laccase; oxidoreductase, multicopper oxidases; 1.50A {Thermus thermophilus} PDB: 2xuw_A 2xvb_A 2yae_A 2yaf_A 2yah_A 2yam_A 2yao_A 2yap_A 2yaq_A 2yar_A 4ai7_A
Probab=99.61 E-value=1.4e-14 Score=149.23 Aligned_cols=241 Identities=12% Similarity=0.063 Sum_probs=159.0
Q ss_pred eEEEEEEEEEEEecC------------CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCC
Q 012003 31 YVFYDWTISYVTASP------------LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNS 97 (473)
Q Consensus 31 ~~~~~l~~~~~~~~~------------dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~ 97 (473)
.+++.|.++.-.... .|.....+++||+. .|.|+|++| ++++||.|... ....+|++|..... .
T Consensus 146 ~~e~~l~l~D~~~~~~~~~~~~~~~~~~g~~~~~~~iNG~~-~p~l~v~~g-~~RlRliN~~~~~~~~~~i~gh~~~v-i 222 (439)
T 2xu9_A 146 AEEHLLVLKDLALQGGRPAPHTPMDWMNGKEGDLVLVNGAL-RPTLVAQKA-TLRLRLLNASNARYYRLALQDHPLYL-I 222 (439)
T ss_dssp SEEEEEEEEEECEETTEECCCCHHHHHHCCCCSEEEETTEE-SCEEECSSS-EEEEEEEECCSSCCEEEEETTBCEEE-E
T ss_pred CCcEEEEEEeeeeCCCCcCCCCccccccCCCCCEEEECCcc-CCcEEecCC-eEEEEEEecCCCceEEEEECCceEEE-E
Confidence 356667666543321 13345689999997 699999999 99999999975 46789999986543 4
Q ss_pred CCCCCCC------CCcccCCCCceEEEEEECCCccceeeccChhhh--hc-CCe--------------eeEEEEEcCCC-
Q 012003 98 WQDGVLG------TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQ--RA-AGG--------------YGGIIINNRDV- 153 (473)
Q Consensus 98 ~~DGv~~------tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q--~~-~Gl--------------~G~liV~~~~~- 153 (473)
+.||.+. ....|.|||+++..+++. ++|.||++|+.... .. .|| ....+++-...
T Consensus 223 ~~DG~~~~~p~~~~~l~l~pgeR~dv~v~~~-~~G~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 301 (439)
T 2xu9_A 223 AADGGFLEEPLEVSELLLAPGERAEVLVRLR-KEGRFLLQALPYDRGAMGMMDMGGMAHAMPQGPSRPETLLYLIAPKNP 301 (439)
T ss_dssp EETTEEEEEEEEESCEEECTTCEEEEEEECC-SSEEEEEEEECCCCCCEEEECSSSCCEEEECCSCCCEEEEEEEECSSC
T ss_pred ecCCCCCCCceEeceEEECCceeEEEEEEcC-CCceEEEEecccccCCccccccccccccccCCCCCcceeEEEEecCCC
Confidence 5799752 235689999999999995 69999999974211 10 122 12223322111
Q ss_pred CCCCCCCCCCceEEEEeeceecch-HHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEE
Q 012003 154 IPLPFAVPDGDITIFISDWYTKSH-KKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRV 232 (473)
Q Consensus 154 ~~~~~~~~~~e~~l~l~d~~~~~~-~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRl 232 (473)
.+.+.+.... -+.+...... ..+ .+..+. ....+.|||+.+.. ..+.+.++.|++++|+|
T Consensus 302 ~~~~~p~~l~----~~~~l~~~~~~r~~--~l~~~~---~g~~~~iNg~~~~~----------~~~~~~~~~g~~~~~~~ 362 (439)
T 2xu9_A 302 KPLPLPKALS----PFPTLPAPVVTRRL--VLTEDM---MAARFFINGQVFDH----------RRVDLKGQAQTVEVWEV 362 (439)
T ss_dssp CCCCCCSCCC----CCCCCCCCSEEEEE--EEEEEG---GGTEEEETTBCCCT----------TCCCEEECTTCEEEEEE
T ss_pred ccccCcccCC----CcccCCCCCcceEE--EEEeec---cCceEeECCEECCC----------CCCceecCCCCEEEEEE
Confidence 1111100000 0000000000 000 000000 01368999998621 22458899999999999
Q ss_pred eEeCCCceeEEEEeCceeEEEeecCcee-eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 233 HNVGISTSLNFRIQNHNLLLVETEGSYT-VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 233 iN~~~~~~~~~~i~gh~~~via~DG~~~-~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.|.+.. .|.||||||.|+|++.+|... .|...|++.+.||+++.+.+++++ +| .|.+.++..
T Consensus 363 ~N~~~~-~HP~HLHG~~F~Vl~~~g~~~~~p~~rDTv~v~p~~~v~i~f~adn-pG-~w~~HCHil 425 (439)
T 2xu9_A 363 ENQGDM-DHPFHLHVHPFQVLSVGGRPFPYRAWKDVVNLKAGEVARLLVPLRE-KG-RTVFHCHIV 425 (439)
T ss_dssp EECSSS-CEEEEESSCCBEEEEETTEECSSCCCBSEEEECTTCEEEEEEECCS-CE-EEEEEESSH
T ss_pred EcCCCC-CCCceeCCCcEEEEeeCCCCCCCCCCeEEEEeCCCCEEEEEEEcCC-CC-CEEEECCcc
Confidence 998754 899999999999999999765 477899999999999999999885 67 788888764
No 43
>2zwn_A Two-domain type laccase; muticopper oxidase, oxidoreductase; 1.70A {Metagenomes}
Probab=99.59 E-value=5.3e-15 Score=147.27 Aligned_cols=189 Identities=15% Similarity=0.139 Sum_probs=114.1
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEe---ecCceeeeeeeeEEEE
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE---TEGSYTVQQNYTNMDI 270 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~v~l 270 (473)
..+++||+.- .|+|++++|+++|+||+|.... .+.+|.|| +.+.+ .||.+. +....|
T Consensus 24 ~~~~~NG~~p-------------GP~I~v~~Gd~v~v~v~N~l~~-~~siH~HG--~~~~~~~~~DGvp~----vtq~~I 83 (339)
T 2zwn_A 24 KVFGFNGQVP-------------GPLIHVQEGDDVIVNVTNNTSL-PHTIHWHG--VHQKGTWRSDGVPG----VTQQPI 83 (339)
T ss_dssp EEEEETTBSS-------------CCEEEEETTCEEEEEEEEESSS-CBCCEEET--CCCTTCGGGSCCBT----TTBCCB
T ss_pred EEEEECCccC-------------CCeEEEECCCEEEEEEEECCCC-CccEEeCC--CCcCCCcccCCCCc----cccCcc
Confidence 4799999862 2999999999999999999864 45555555 55565 499863 345679
Q ss_pred cCCceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccccccccC
Q 012003 271 HVGQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVS 350 (473)
Q Consensus 271 ~pGeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~ 350 (473)
.||||+++.++++ .+| +||..++.....+... ....+.|...... + ..++... +.+..+. ..+ +...
T Consensus 84 ~PG~~~~y~f~~~-~~G-t~wyH~H~~~~~q~~~--~Gl~G~liV~p~~-~--~~~~~~~---d~e~~l~-l~d--~~~~ 150 (339)
T 2zwn_A 84 EAGDSYTYKFKAD-RIG-TLWYHCHVNVNEHVGV--RGMWGPLIVDPKQ-P--LPIEKRV---TKDVIMM-MST--WESA 150 (339)
T ss_dssp CTTCEEEEEEECC-SCE-EEEEECCSSHHHHTTT--SCCEEEEEEECSS-C--CTTGGGC---SEEEEEE-EEE--ECGG
T ss_pred CCCCeEEEEEECC-CCE-EEEEEecCCchhhhhc--CCceEeEEecCCC-c--ccccccC---CceEEEE-eeh--eecc
Confidence 9999999999998 478 9999987642111000 1112333333221 1 0111100 1110000 000 0000
Q ss_pred CCCCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCCCCCCcc
Q 012003 351 AGAARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKV 430 (473)
Q Consensus 351 ~~~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~~ 430 (473)
. ...+... . . .......|.|||+.|..
T Consensus 151 ~-~~~~~~~--------g--------~----~~~~~~~~~ING~~~~~-------------------------------- 177 (339)
T 2zwn_A 151 V-ADKYGEG--------G--------T----PMNVADYFSVNAKSFPL-------------------------------- 177 (339)
T ss_dssp G-TTCTTCC--------C--------S----TTSCCCEEEETTBCTTS--------------------------------
T ss_pred c-ccccCCC--------C--------C----CccccceEEEccccCCC--------------------------------
Confidence 0 0000000 0 0 00112368899987621
Q ss_pred ceEEEeecCCcEEEEEEecCCCCCCceeecCCccEEEee
Q 012003 431 DTSLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGW 469 (473)
Q Consensus 431 ~~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~ 469 (473)
..++.++.|++|+|.|.|.+...||||||||+|+||+.
T Consensus 178 -~~~~~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~ 215 (339)
T 2zwn_A 178 -TQPLRVKKGDVVKIRFFGAGGGIHAMHSHGHDMLVTHK 215 (339)
T ss_dssp -SCCEEECTTCEEEEEEEECSSSCEEEEETTCCEEEEEE
T ss_pred -cccEEECCCCEEEEEEEeCCCceEEEEECCcEEEEEEe
Confidence 01257788999999999998889999999999999997
No 44
>1hfu_A Laccase 1; oxidoreductase, blue multi-copper oxidase, type-2 copper depleted, signal, glycoprotein; HET: MAN NAG NDG; 1.68A {Coprinus cinereus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1a65_A*
Probab=99.54 E-value=3.9e-13 Score=140.70 Aligned_cols=260 Identities=12% Similarity=0.074 Sum_probs=161.9
Q ss_pred EEEEEEEEEEecCCCc-----eEEEEEEcCCCC--------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCC
Q 012003 33 FYDWTISYVTASPLGD-----KQQVIGINGQFP--------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSW 98 (473)
Q Consensus 33 ~~~l~~~~~~~~~dG~-----~~~~~~~Ng~~p--------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~ 98 (473)
++.|.++.-....++. ....+++||+.. .|+|+|++|+++++||.|... ....+|++|..+.. .+
T Consensus 143 e~~l~l~Dw~~~~~~~~~~~~~~d~~liNG~~~~~~~~~~~~~~~~v~~g~~~RlRliN~~~~~~~~~~i~gh~~~v-i~ 221 (503)
T 1hfu_A 143 NTIITLADWYHIPAPSIQGAAQPDATLINGKGRYVGGPAAELSIVNVEQGKKYRMRLISLSCDPNWQFSIDGHELTI-IE 221 (503)
T ss_dssp TSEEEEEEECSSCGGGCC---CCSEEEETTBCCBTTCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EE
T ss_pred eEEEEEcccccCChHHhcCCCCCCEEEECcccccCCCCCCcceEEEEcCCCEEEEEEEecCCcccEEEEEcCceEEE-Ee
Confidence 4556666554443332 235789999853 289999999999999999975 45789999986543 46
Q ss_pred CCCCCC-----CCcccCCCCceEEEEEECCCccceeeccChh--hh-----hcCCeeeEEEEEcCCCCCCCCCCCCCceE
Q 012003 99 QDGVLG-----TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD--FQ-----RAAGGYGGIIINNRDVIPLPFAVPDGDIT 166 (473)
Q Consensus 99 ~DGv~~-----tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~--~q-----~~~Gl~G~liV~~~~~~~~~~~~~~~e~~ 166 (473)
.||.+. ....|.|||+++..+++.+.+|.||.+++.. .+ ...|+..+++.........+......+.
T Consensus 222 ~DG~~~~p~~~~~l~l~pgeR~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~~~~- 300 (503)
T 1hfu_A 222 VDGELTEPHTVDRLQIFTGQRYSFVLDANQPVDNYWIRAQPNKGRNGLAGTFANGVNSAILRYAGAANADPTTSANPNP- 300 (503)
T ss_dssp ETTEEEEEEEESBEEECTTCEEEEEEECCSCSSEEEEEEEESSCGGGGGGCCGGGTTEEEEEETTSCSSCCCCCCCSSC-
T ss_pred ccCccccccccCeEEEcccceEEEEEEcCCCccceeeeeccccCCcccccccCCCceEEEEEECCCCCCCCCCCCCCcc-
Confidence 799752 3456899999999999964479999998743 11 2234434444433221111110000000
Q ss_pred EEEeeceecch--HHH---------HHhhhCCCCCCCCCeEEEcCCCCCCCCCC-----cCC------CCCCceEEEEeC
Q 012003 167 IFISDWYTKSH--KKL---------RKDVENGVDLGVPDGILINGLGPYRYDAA-----IVP------DGIPYQLINVEP 224 (473)
Q Consensus 167 l~l~d~~~~~~--~~~---------~~~~~~~~~~~~~~~~liNG~~~~~~~~~-----~~~------~~~~~~~~~v~~ 224 (473)
..+.+...... ... ...+..... .....+.|||+.+...... ..+ .......+.++.
T Consensus 301 ~~l~~~~l~p~~~~~~p~~~~~~~~~~~~~l~~~-~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~ 379 (503)
T 1hfu_A 301 AQLNEADLHALIDPAAPGIPTPGAADVNLRFQLG-FSGGRFTINGTAYESPSVPTLLQIMSGAQSANDLLPAGSVYELPR 379 (503)
T ss_dssp CBCCGGGCBBSSSCSCSSCSSTTCSSEEEECCEE-EETTEEEETTBCCCCCSSCHHHHHHTTCCSGGGSSSTTSEEEECS
T ss_pred CCCccccccccCccCCCCcccCCcceEEEEEEee-ccCceEEECCCccCCCCCcchhhhhcCCcccccCCCCceEEEccC
Confidence 00001000000 000 000000000 0012688999986321100 000 001246789999
Q ss_pred CcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee----eeeeeeEEEE-cCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 225 GKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT----VQQNYTNMDI-HVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 225 G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~----~p~~~d~v~l-~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|++++++++|......|.||||||.|+|++.+|... .|...|++.+ .||+++.|.+++++ +| .|.+.++..
T Consensus 380 g~~vei~l~~n~~~~~HP~HLHGh~F~Vl~~~~~~~~n~~~p~~rDTV~V~ppg~~v~irf~adn-PG-~W~~HCHil 455 (503)
T 1hfu_A 380 NQVVELVVPAGVLGGPHPFHLHGHAFSVVRSAGSSTYNFVNPVKRDVVSLGVTGDEVTIRFVTDN-PG-PWFFHCHIE 455 (503)
T ss_dssp SCEEEEEEECCSTTCCCEEEETTCCEEEEECTTCCCCCCSSBCEESEEECCSTTCEEEEEEECCS-CE-EEEEEESSH
T ss_pred CCEEEEEEECCCCCCCCCEEEecceEEEEecCCCCccccCCCCeeeeEEecCCCceEEEEEEcCC-Ce-eeeEecCch
Confidence 999999999654455899999999999999998752 5788999999 79999999999985 67 788888764
No 45
>1v10_A Laccase; multicopper blue oxidase, oxidase; 1.7A {Rigidoporus lignosus} SCOP: b.6.1.3 b.6.1.3 b.6.1.3
Probab=99.54 E-value=2.8e-13 Score=142.39 Aligned_cols=239 Identities=13% Similarity=0.122 Sum_probs=152.2
Q ss_pred EEEEEcCCCC---------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCce
Q 012003 51 QVIGINGQFP---------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNW 115 (473)
Q Consensus 51 ~~~~~Ng~~p---------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~ 115 (473)
..+++||+.. -|+|+|++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||++
T Consensus 192 d~~liNG~~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgqR~ 270 (521)
T 1v10_A 192 DTTLINGLGRNSANPSAGQLAVVSVQSGKRYRFRIVSTSCFPNYAFSIDGHRMTV-IEVDGVSHQPLTVDSLTIFAGQRY 270 (521)
T ss_dssp SEEEETTBCCCSSCGGGSCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTCEE
T ss_pred CEEEECCcccCCCCCCCCCceEEEECCCCEEEEEEEecCCcccEEEEECCCeEEE-EecCCccccceeeeeEEEcccceE
Confidence 5789999853 189999999999999999975 45789999986542 45799752 34568999999
Q ss_pred EEEEEECCCccceeeccChhh---hhcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecch------H-----HHH
Q 012003 116 TYQFQVKDQIGSFFYFPSLDF---QRAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSH------K-----KLR 181 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~---q~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~------~-----~~~ 181 (473)
+..+++.+.+|.||.+++... ....|+..+++.........+..... + ...+.+...... . ...
T Consensus 271 dvlv~~~~~~g~y~i~~~~~~~~~~~~~~~~~ail~y~~~~~~~p~~~~~-~-~~~~~~~~l~p~~~~~~p~~~~~~~~~ 348 (521)
T 1v10_A 271 SVVVEANQAVGNYWIRANPSNGRNGFTGGINSAIFRYQGAAVAEPTTSQN-S-GTALNEANLIPLINPGAPGNPVPGGAD 348 (521)
T ss_dssp EEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTCCSCCCCCCCC-C-SCBCCGGGCCBSSCCCCSSCSSTTCSS
T ss_pred EEEEEcCCCCCceeeeeccccccccCCCCceeEEEEECCCCCCCCCCCCC-c-ccccchhhcccCCcccCCCcccCCcce
Confidence 999999644799999997531 12234434444443221111110000 0 000000000000 0 000
Q ss_pred HhhhCCCC-CCCCCeEEEcCCCCCCCCCC-----cCC------CCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCce
Q 012003 182 KDVENGVD-LGVPDGILINGLGPYRYDAA-----IVP------DGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHN 249 (473)
Q Consensus 182 ~~~~~~~~-~~~~~~~liNG~~~~~~~~~-----~~~------~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~ 249 (473)
..+..... ......|.|||+.+...... ..+ .....+.+.++.|++++++++| ...|.||||||.
T Consensus 349 ~~~~l~~~~~~~~~~~~iNg~~~~~~~~P~l~~~~~g~~~~~~~~~~~~~~~v~~g~~vei~l~N---~~~HP~HLHGh~ 425 (521)
T 1v10_A 349 INLNLRIGRNATTADFTINGAPFIPPTVPVLLQILSGVTNPNDLLPGGAVISLPANQVIEISIPG---GGNHPFHLHGHN 425 (521)
T ss_dssp EEEECCEECCSSSSCCEESSCCCCCCSSCHHHHHHHTCCCGGGSSSTTTEEEECTTCEEEEEEEC---CBSCEEEESSCC
T ss_pred EEEEEEEecCCceeEEEECCCcccCCCCchhhhhhcCCcccccCCCCceEEEecCCCEEEEEEcC---CCCCCEEEccce
Confidence 00000000 00112588999986321100 000 0012367899999999999999 347999999999
Q ss_pred eEEEeecCce----eeeeeeeEEEE-cCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 250 LLLVETEGSY----TVQQNYTNMDI-HVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 250 ~~via~DG~~----~~p~~~d~v~l-~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|+|++.+|.. ..|...|++.+ .||+++.|.+++++ +| .|.+.++..
T Consensus 426 F~Vl~~~~~~~~n~~~p~~rDTV~V~p~gg~v~Irf~aDN-PG-~W~~HCHi~ 476 (521)
T 1v10_A 426 FDVVRTPGSSVYNYVNPVRRDVVSIGGGGDNVTFRFVTDN-PG-PWFLHCHID 476 (521)
T ss_dssp EEEEECTTCSCCCCSSCCEESEEECCBSSCEEEEEEECCS-CE-EEEEEESCH
T ss_pred EEEEecCCCCccccCCCCeeeeEEeCCCCcEEEEEEEeCC-Ce-eEEEeeChH
Confidence 9999999865 25788999999 79999999999995 67 788888765
No 46
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=99.51 E-value=3.9e-14 Score=124.37 Aligned_cols=99 Identities=16% Similarity=0.212 Sum_probs=73.0
Q ss_pred CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCC------CCCC--CcccCCCC--ce
Q 012003 46 LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDG------VLGT--NCPIPAGW--NW 115 (473)
Q Consensus 46 dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DG------v~~t--q~~I~PG~--~~ 115 (473)
.|+...-+.++|. ++|+|+|++||+|+++++|... ...|++.+....+.+.+. ...+ ...|.||+ +.
T Consensus 46 ~~~~~~~~~~~g~-~~p~i~V~~GD~V~~~~tN~~~--~~~H~~~i~~~~~~~~~~~~~~~~~~~~~~~~~i~PG~sgt~ 122 (154)
T 2cal_A 46 PGFPFPSFEVHDK-KNPTLEIPAGATVDVTFINTNK--GFGHSFDITKKGPPYAVMPVIDPIVAGTGFSPVPKDGKFGYT 122 (154)
T ss_dssp TTSCSSCEEETTE-ESCEEEECTTCEEEEEEEECCT--TCCCCCEEESCCSCCCSSCCCCSEEEEBCCCCCCBTTBEEEE
T ss_pred cCCccccccccCC-CCCEEEEeCCCEEEEEEEcCCC--CeeeEEEEeecCcchhccccccccccccccccccCCCCceEE
Confidence 3444444556666 5799999999999999999732 446777666544433221 0110 12789999 99
Q ss_pred EEEEEECCCccceeeccChhhhhcCCeeeEEEEE
Q 012003 116 TYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
+|+|++ ++|+||||||...|..+||+|.|+|+
T Consensus 123 t~tft~--~pGtY~y~C~~~gH~~~GM~G~IiV~ 154 (154)
T 2cal_A 123 DFTWHP--TAGTYYYVCQIPGMAATGMFGKIVVK 154 (154)
T ss_dssp EEEECC--CSEEEEEECCSTTTGGGTCEEEEEEC
T ss_pred EEEEEE--CCceEEEECCCCCHHHCCCEEEEEEC
Confidence 999997 69999999999889999999999984
No 47
>3gdc_A Multicopper oxidase; beta sandwich, plasmid, oxidoreductase; 1.80A {Arthrobacter SP}
Probab=99.49 E-value=3.8e-14 Score=137.83 Aligned_cols=179 Identities=15% Similarity=0.118 Sum_probs=117.3
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCC
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVG 273 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pG 273 (473)
..+++||+.- .|+|++++|+++++|+.|.... .+.+|+||.. ..+.||.+. ++...|.||
T Consensus 55 ~~~~~ng~~p-------------gP~i~~~~Gd~v~v~~~N~~~~-~~~iH~HG~~--~~~~DG~p~----~~~~~i~PG 114 (288)
T 3gdc_A 55 KGWSYNGRIP-------------GPTLWAREGDALRIHFTNAGAH-PHTIHFHGVH--RATMDGTPG----IGAGSIAPG 114 (288)
T ss_dssp EEEEETTBSS-------------CCEEEEETTCEEEEEEEECSSS-CBCCEESSCC--CGGGSCCTT----STTCSBCTT
T ss_pred EEEEECCccC-------------CCcEEEeCCCEEEEEEEeCCCC-cccEEecccc--ccccCCCCC----ccceeECCC
Confidence 4799999873 3899999999999999999865 7899999976 457899764 244678999
Q ss_pred ceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccccccccCCCC
Q 012003 274 QSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVSAGA 353 (473)
Q Consensus 274 eR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~~ 353 (473)
|+++..++++ .+| +||..++...... .......+.|.+..... .+ +. +.+..+. ..+.
T Consensus 115 ~~~~y~f~~~-~~G-t~~yH~H~~~~~~--~~~~Gl~G~liV~~~~~-----~~--~~--d~e~~l~-~~d~-------- 172 (288)
T 3gdc_A 115 QSFTYEFDAT-PFG-THLYHCHQSPLAP--HIAKGLYGGFIVEPKEG-----RP--PA--DDEMVMV-MNGY-------- 172 (288)
T ss_dssp CEEEEEEECC-SCE-EEEEECCCSSHHH--HHHTTCEEEEEEECSSC-----CC--CC--SEEEEEE-EEEE--------
T ss_pred CEEEEEEEcC-CCc-cEEEEecCcchHH--HHhCcCeEEEEEeCCcc-----CC--CC--cceEEEE-EeeE--------
Confidence 9999999997 578 9999988742100 00012234444442211 01 00 1111000 0000
Q ss_pred CCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCCCCCCccceE
Q 012003 354 ARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDTS 433 (473)
Q Consensus 354 ~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 433 (473)
... .......|+|||+.|.... .
T Consensus 173 ----------------------~~~---~g~~~~~~~iNG~~~~~~~--------------------------------~ 195 (288)
T 3gdc_A 173 ----------------------NTD---GGDDNEFYSVNGLPFHFMD--------------------------------F 195 (288)
T ss_dssp ----------------------CCS---STTCCSEEEETTSTTHHHH--------------------------------S
T ss_pred ----------------------ecC---CCCCcceEEECcccccccC--------------------------------c
Confidence 000 0011236899999873100 1
Q ss_pred EEeecCCcEEEEEEecCCCC--CCceeecCCccEEEeecC
Q 012003 434 LINGTYKGFMEIIFQNNDTT--VQSYHMDGYAFFVVGWQF 471 (473)
Q Consensus 434 ~~~~~~g~~Veivl~N~~~~--~HP~HLHGh~F~Vl~~g~ 471 (473)
.+.++.|++|+|.|.|.+.. .||||||||.|+|++.|.
T Consensus 196 ~l~v~~Ge~vr~~l~N~g~~~~~H~fHlhG~~f~v~~~g~ 235 (288)
T 3gdc_A 196 PVKVKQHELVRIHLINVLEYDPINSFHIHGNFFHYYPTGT 235 (288)
T ss_dssp CEEEETTCCEEEEEEECCCSSSEEEEEETTCCEEEEETTC
T ss_pred ccccCCCCEEEEEEEeCCCCCcceeEEEcCCEEEEEcCCC
Confidence 14678999999999998754 599999999999998764
No 48
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=99.48 E-value=1.3e-13 Score=114.64 Aligned_cols=104 Identities=21% Similarity=0.115 Sum_probs=77.8
Q ss_pred EEEEEEEEEEe-----cCCCceEEE-EEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC
Q 012003 33 FYDWTISYVTA-----SPLGDKQQV-IGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN 106 (473)
Q Consensus 33 ~~~l~~~~~~~-----~~dG~~~~~-~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq 106 (473)
.|.+.+.+... ..+|..... ..+|++++++.|++++||+|+++++|.... +||+.... .|+ +
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~f~p~~i~v~~G~~V~~~~~n~d~~-----~H~~~i~~----~~~---~ 70 (112)
T 1iby_A 3 NFNVVINAYDTTIPELNVEGVTVKNIRAFNVLNEPETLVVKKGDAVKVVVENKSPI-----SEGFSIDA----FGV---Q 70 (112)
T ss_dssp CEEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEESCEEEEETTCEEEEEEEECSSS-----CEEEEEGG----GTE---E
T ss_pred ceeEEEEeccCccccEEeccEEEEEEEEEeeEEcCCEEEEeCCCEEEEEEEECCCC-----eEEEEEcC----CCc---e
Confidence 45555555433 345666555 589999999999999999999999999765 55553321 122 3
Q ss_pred cccCCCCceEEEEEECCCccceeeccChhhhhcCCeeeEEEEEc
Q 012003 107 CPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 107 ~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
..+.||++++|.|++ +++|+||||||...+.. +|.|.|+|.+
T Consensus 71 ~~i~pG~~~~~~f~~-~~~G~y~~~C~~~~~~~-~M~g~i~V~~ 112 (112)
T 1iby_A 71 EVIKAGETKTISFTA-DKAGAFTIWCQLHPKNI-HLPGTLNVVE 112 (112)
T ss_dssp EEECTTCEEEEEEEC-CSCEEEEEBCSSSCTTT-BCCEEEEEEC
T ss_pred eEeCCCCEEEEEEEC-CCCEEEEEECCCCCchH-HCEEEEEEeC
Confidence 679999999999998 58999999998754433 3999999974
No 49
>3cg8_A Laccase; oxidoreductase, multicopper blue protein; HET: PG4; 2.68A {Streptomyces coelicolor}
Probab=99.48 E-value=9.3e-14 Score=138.27 Aligned_cols=104 Identities=16% Similarity=0.198 Sum_probs=85.2
Q ss_pred EEEcCCC--CCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC-------C--CCcccCCCCceEEEEEE
Q 012003 53 IGINGQF--PGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL-------G--TNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 53 ~~~Ng~~--pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~-------~--tq~~I~PG~~~~Y~f~~ 121 (473)
|+|||+. ..|.|++++||+|+++|.|.....+.+|+||..+... .+|.. . ....|.||++++|.|++
T Consensus 198 ~~iNG~~~~~~~~l~v~~Ge~vri~l~N~g~~~HpfHlHGh~f~v~--~~G~~~~p~~~~~~~Dtv~v~PG~~~~v~~~~ 275 (343)
T 3cg8_A 198 MTINNRKPHTGPDFEATVGDRVEIVMITHGEYYHTFHMHGHRWADN--RTGILTGPDDPSRVIDNKITGPADSFGFQIIA 275 (343)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEESS--SSSSCCSTTCCCCEESEEEECTTCEEEEEEET
T ss_pred ceecccCCCCCccEEeCCCCEEEEEEEcCCccccccEecCcEEEEe--ccCcccCCCCcccceeeEEeCCCCEEEEEEEE
Confidence 6899986 4789999999999999999988999999999865332 23321 1 23569999999999996
Q ss_pred --CCCccceeeccChhhhhcCCeeeEEEEEcCCCCCCCC
Q 012003 122 --KDQIGSFFYFPSLDFQRAAGGYGGIIINNRDVIPLPF 158 (473)
Q Consensus 122 --~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~~~~~~ 158 (473)
.+++|+|+||||...|...||.|.|+|.+++.....|
T Consensus 276 ~~~~~pG~w~~HCHi~~H~~~GM~g~~~V~~~~~~~P~y 314 (343)
T 3cg8_A 276 GEGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDGTIPGY 314 (343)
T ss_dssp TTTTCSEEEEEEECSHHHHHTTCEEEEEEECTTSCCSCC
T ss_pred CCCCCCeeEEEeCCCHHHHhccCcEEEEEecCCCCCCCC
Confidence 3579999999999999999999999999876544333
No 50
>3g5w_A Multicopper oxidase type 1; two domain, laccase, nitrifier, metal B protein; 1.90A {Nitrosomonas europaea}
Probab=99.46 E-value=1.1e-13 Score=136.28 Aligned_cols=191 Identities=14% Similarity=0.064 Sum_probs=118.3
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEE-EeecCceeeeeeeeEEEEcC
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL-VETEGSYTVQQNYTNMDIHV 272 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~p~~~d~v~l~p 272 (473)
..+++||+.- -|+|++++|+++++||.|.... .+.+|+||....- .+.||.+. +....|.|
T Consensus 23 ~~~~~ng~~p-------------GP~i~~~~Gd~v~v~~~N~l~~-~~siH~HG~~~~~~~~~DG~p~----~t~~~i~P 84 (318)
T 3g5w_A 23 HTFAFNGQVP-------------APLIHVMEGDDVTVNVTNMTTL-PHTIHWHGMLQRGTWQSDGVPH----ATQHAIEP 84 (318)
T ss_dssp EEEEETTBSS-------------CCEEEEETTCEEEEEEEECSSS-CBCCEEETCCCTTCGGGSCCBT----TTBCCBCT
T ss_pred EEEEECCccC-------------CceEEEeCCCEEEEEEEeCCCC-ceeEEecCcCCCCCcccCCCcc----cccccCCC
Confidence 4789999863 3899999999999999998754 7899999986543 36899763 23467899
Q ss_pred CceEEEEEEeCCCCCcceEEEEeecccCCccCCccceEEEEEecCCCCCCCCCCCCCCCCCCcccccccccccccccCCC
Q 012003 273 GQSFSFLVTTDQNASSDYYIVASPRFVNSSEWNKVTGVAILHYSNSLGPASGPLPDPPNAYDTYFSMNQARSIRWNVSAG 352 (473)
Q Consensus 273 GeR~dv~v~~~~~~g~~y~i~~~~~~~~~~~~~~~~~~ail~y~~~~~~~~~~~p~~p~~~~~~~~~~~~~~~~~~l~~~ 352 (473)
||+++..++++ .+| +||..++........ .....+.|.+..... .+++.. ++.+..+. ..+..... .
T Consensus 85 G~~~~y~f~~~-~~G-t~wYH~H~~~~~~~~--~~Gl~G~lIV~~~~~---~~~~~~---~d~e~~l~-l~dw~~~~--~ 151 (318)
T 3g5w_A 85 GDTFTYKFKAE-PAG-TMWYHCHVNVNEHVT--MRGMWGPLIVEPKNP---LPIEKT---VTKDYILM-LSDWVSSW--A 151 (318)
T ss_dssp TCEEEEEEECC-SCE-EEEEECCSSHHHHHH--HSCCEEEEEEECSSC---CHHHHT---CCEEEEEE-EEEECGGG--T
T ss_pred CCEEEEEEEcC-CCE-EEEEEccCChhhhhc--cCCCEEEEEEcCCCc---cccccc---ccceeEEE-EEeecccc--c
Confidence 99999999998 468 999988764211000 011233343332211 011100 01111000 00100000 0
Q ss_pred CCCCCCCCCCccCccceeEEEEEecccccccCCeEEEEecceeccCCCCchhhhhhcCCCCccccCCCCCCCCCCCccce
Q 012003 353 AARPNPQGSFKYGQITVTDVYVILNRPAELIEGKWRTTLNGISYLPPSTPLMLAQQFNIPGAYKLDFPYKLMSRAPKVDT 432 (473)
Q Consensus 353 ~~~~~p~~~~~~~~~~~~~~~~l~~~~~~~~~g~~~~~iN~~s~~~p~~P~l~~~~~~~~~~~~~~~~~~p~~~~~~~~~ 432 (473)
. ..... .. .......|.|||+.|.. .
T Consensus 152 ~-~~~~~------------------~~--~~~~~d~~~ING~~~~~--~------------------------------- 177 (318)
T 3g5w_A 152 N-KPGEG------------------GI--PGDVFDYYTINAKSFPE--T------------------------------- 177 (318)
T ss_dssp T-CTTCC------------------CC--TTCCCCEEEETTBCBTS--S-------------------------------
T ss_pred c-ccccC------------------CC--CCCcCcEEEEcCcCCCC--C-------------------------------
Confidence 0 00000 00 00012368999998721 0
Q ss_pred EEEeecCCcEEEEEEecCCCCCCceeecCCccEEEee
Q 012003 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAFFVVGW 469 (473)
Q Consensus 433 ~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F~Vl~~ 469 (473)
..+.++.|++|+|.|.|.+...||||||||.|+||+.
T Consensus 178 ~~l~v~~G~~vrlrliN~~~~~h~~hlhGh~f~vi~~ 214 (318)
T 3g5w_A 178 QPIRVKKGDVIRLRLIGAGDHVHAIHTHGHISQIAFK 214 (318)
T ss_dssp CCEEECTTCEEEEEEEECSSSCEEEEETTSCEEEEEE
T ss_pred ccEEeCCCCEEEEEEEeCCCceEEEEECCcEEEEEec
Confidence 1157789999999999998889999999999999987
No 51
>3zx1_A Oxidoreductase, putative; laccase, metallo-oxidase, cuprous oxidase; 1.95A {Campylobacter jejuni subsp}
Probab=99.43 E-value=2.8e-12 Score=132.83 Aligned_cols=240 Identities=15% Similarity=0.095 Sum_probs=157.3
Q ss_pred EEEEEEEEEEEecCCCc-------------eEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCC
Q 012003 32 VFYDWTISYVTASPLGD-------------KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNS 97 (473)
Q Consensus 32 ~~~~l~~~~~~~~~dG~-------------~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~ 97 (473)
++| |.++......+|. ....+++||+. .|+|.|++|+ ++||.|... ....+|++|.... ..
T Consensus 181 ~~~-l~l~D~~~~~~g~~~~~~~~~~~~g~~gd~~lvNG~~-~p~l~v~~g~--RlRliNa~~~~~~~l~i~g~~~~-vI 255 (481)
T 3zx1_A 181 EKD-LMISDLRLDENAQIPNNNLNDWLNGREGEFVLINGQF-KPKIKLATNE--RIRIYNATAARYLNLRIQGAKFI-LV 255 (481)
T ss_dssp EEE-EEEEEECCBTTSCCCCCCHHHHHHCCCCSEEEETTEE-SCEEEEETTE--EEEEEECCSSCCEEEEETTCEEE-EE
T ss_pred cee-EEEEEEeccCCCccccccchhhccCCcCCEEEECCcc-CceEEecCCC--EEEEEecCCCeEEEEEECCCceE-EE
Confidence 455 7777665554443 33678999996 5899999999 999999864 6678999998754 35
Q ss_pred CCCCCC----C--CCcccCCCCceEEEEEECCCccceeeccChhhhhcCCe----------eeEEEEEcCCCCCCC----
Q 012003 98 WQDGVL----G--TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAGG----------YGGIIINNRDVIPLP---- 157 (473)
Q Consensus 98 ~~DGv~----~--tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl----------~G~liV~~~~~~~~~---- 157 (473)
+.||.. . ....|.|||+++..++++ +.|+|..-++.... +|+ ..-+-+... ....|
T Consensus 256 a~DGg~~~~P~~~~~l~l~pgeR~dvlv~~~-~~~~~~l~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~-~~~lP~~l~ 331 (481)
T 3zx1_A 256 GTDGGLIEKTIYKEELFLSPASRVEVLIDAP-KDGNFKLESAYYDR--DKMMVKEEPNTLFLANINLKKE-NVELPKNLK 331 (481)
T ss_dssp EETTEEEEEEEEESSEEECTTCEEEEEEECS-SCEEEEEEECCCCC--CCSSCCCCCCCEEEEEEEEECC-CCCCCSCSC
T ss_pred EcCCCccCCceEeCeEEECCccEEEEEEEcC-CCcEEEEEEecccc--cCccccCCCCceeEEEEecCCC-CccCCcccc
Confidence 689742 2 346699999999999985 57887776653211 111 111222221 11111
Q ss_pred ----CCCCCCceEEEEeeceecchHHHHHhhhCCCCC---CCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEE
Q 012003 158 ----FAVPDGDITIFISDWYTKSHKKLRKDVENGVDL---GVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRL 230 (473)
Q Consensus 158 ----~~~~~~e~~l~l~d~~~~~~~~~~~~~~~~~~~---~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rl 230 (473)
.+..+.+..+.++....+ +..+...+... .....++|||+.+. ...+.+.++.|++++|
T Consensus 332 ~~~~~~~~~~~r~~~l~~~~~~----~~~~~~~~~~~~~~~~~~~~~iNG~~~~----------~~~~~~~~~~G~~v~w 397 (481)
T 3zx1_A 332 IFKPSEEPKEFKEIIMSEDHMQ----MHGMMGKSEGELKIALASMFLINRKSYD----------LKRIDLSSKLGVVEDW 397 (481)
T ss_dssp CCCCCCCCCEEEEEEEEECCST----TTTGGGCCHHHHHHHHHTTEEETTBCCC----------TTCCCEEEETTCCEEE
T ss_pred CCCCCCCCCcEEEEEEeccchh----cccccccccccccccccceeEECCEeCC----------CCCceEEeCCCCEEEE
Confidence 111122333333321100 00000000000 00124899999862 1236789999999999
Q ss_pred EEeEeCCCceeEEEEeCceeEEEee--cCceee---eeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 231 RVHNVGISTSLNFRIQNHNLLLVET--EGSYTV---QQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 231 RliN~~~~~~~~~~i~gh~~~via~--DG~~~~---p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
+|+|.+.. .|.||||||.|+|++. ||.... +...|++.+.|||++.|.++++ .+| .|.+.++..
T Consensus 398 ~l~N~~~~-~Hp~HlHG~~F~vl~~~~~g~~~~~~~~~~kDTv~v~Pg~~~~i~~~~d-~pG-~w~~HCHil 466 (481)
T 3zx1_A 398 IVINKSHM-DHPFHIHGTQFELISSKLNGKVQKAEFRALRDTINVRPNEELRLRMKQD-FKG-LRMYHCHIL 466 (481)
T ss_dssp EEEECSSS-CEEEEETTCCEEEEEEEETTEEEECSSCCEESEEEECTTCEEEEEECCC-SCE-EEEEEESSH
T ss_pred EEEcCCCC-ceeEEEeccEEEEEEecccCCCCCcccCcccceEEECCCCEEEEEEEcC-CCe-eEEEEcCCh
Confidence 99997654 8999999999999999 998764 4678999999999999999997 467 788877654
No 52
>3t6v_A Laccase; beta barrel, oxidoreductase; HET: CBS; 2.00A {Steccherinum ochraceum} PDB: 3t6w_A* 3t6x_A* 3t6z_A* 3t71_A*
Probab=99.41 E-value=1.2e-11 Score=128.68 Aligned_cols=243 Identities=12% Similarity=0.093 Sum_probs=151.0
Q ss_pred EEEEEEcCCC---------CCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCc
Q 012003 50 QQVIGINGQF---------PGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWN 114 (473)
Q Consensus 50 ~~~~~~Ng~~---------pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~ 114 (473)
...+++||+- +-|.|+|++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||+
T Consensus 168 ~d~~liNG~g~~~~~~~~~~~~~~~v~~G~~~RlRliN~~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGqR 246 (495)
T 3t6v_A 168 ADSTLIDGLGRTHVNVAAVPLSVITVEVGKRYRMRLVSISCDPNYDFSIDGHDMTI-IETDGVDSQELTVDEIQIFAAQR 246 (495)
T ss_dssp CSEEEETTBCCBSSSCCCCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESBEEECTTCE
T ss_pred CcEEEECCcCcCCCCcccCCceEEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEeCCcccCCEEeeeEEEcCceE
Confidence 4678999973 3479999999999999999854 56789999986542 56899753 2356899999
Q ss_pred eEEEEEECCCccceeeccChh---hhhcCCeeeEEEEEcCCCCCCCCCCCCC-ceEEEEeeceecchH-----------H
Q 012003 115 WTYQFQVKDQIGSFFYFPSLD---FQRAAGGYGGIIINNRDVIPLPFAVPDG-DITIFISDWYTKSHK-----------K 179 (473)
Q Consensus 115 ~~Y~f~~~~~~Gt~wYH~H~~---~q~~~Gl~G~liV~~~~~~~~~~~~~~~-e~~l~l~d~~~~~~~-----------~ 179 (473)
++..+++.+.+|.||.++... .....|...+++.........+...... .. ..+.+....... .
T Consensus 247 ~dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~~-~~~~~~~L~p~~~~~~p~~~~~~~ 325 (495)
T 3t6v_A 247 YSFVLNANQPVGNYWIRANPNSGGEGFDGGINSAILRYDGATTADPVTVASTVHT-KCLIETDLHPLSRNGVPGNPHQGG 325 (495)
T ss_dssp EEEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCSSCS-SBCCGGGCCBSSCCCCSSCSSTTC
T ss_pred EEEEEECCCCCceEEEEEecccCccccCCCceEEEEEECCCCCCCCCCCCCCCCc-cccccccccccccccCCCccCCCC
Confidence 999999964469999998632 1122233334444432211111100000 00 000010000000 0
Q ss_pred HHHhhhCCCCCCCCCeEEEcCCCCCCCCCC-----cCC------CCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc
Q 012003 180 LRKDVENGVDLGVPDGILINGLGPYRYDAA-----IVP------DGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH 248 (473)
Q Consensus 180 ~~~~~~~~~~~~~~~~~liNG~~~~~~~~~-----~~~------~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh 248 (473)
....+..... .....|.|||+.+..-... ..+ .......+.++.|++++|.|.|......|.||+|||
T Consensus 326 ~d~~~~l~~~-~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~n~~~~~HP~HLHGh 404 (495)
T 3t6v_A 326 ADCNLNLSLG-FACGNFVINGVSFTPPTVPVLLQICSGANTAADLLPSGSVISLPSNSTIEIALPAGAAGGPHPFHLHGH 404 (495)
T ss_dssp SSEEEECCEE-EETTEEEETTBCCCCCSSCHHHHHHTTCCSSTTSSSTTSEEEECTTCEEEEEEECCSSSCCCEEEETTC
T ss_pred CcEEEEEEEE-ecCcEEEEcCEecCCCCCcchhhhhcCCcCcccccCCcceEEecCCCEEEEEEccCCCCCCcceeecCC
Confidence 0000000000 0113688999886321100 000 011235789999999999998433345899999999
Q ss_pred eeEEEeecCcee----eeeeeeEEEEcC-CceEEEEEEeCCCCCcceEEEEeec
Q 012003 249 NLLLVETEGSYT----VQQNYTNMDIHV-GQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 249 ~~~via~DG~~~----~p~~~d~v~l~p-GeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.|+|++.+|... .|...|++.+.+ |+...+.+++++ +| .|.+.++..
T Consensus 405 ~F~vl~~~g~~~~n~~~P~~rDtv~v~~~g~~~~irf~adn-PG-~W~~HCHi~ 456 (495)
T 3t6v_A 405 DFAVSESASNSTSNYDDPIWRDVVSIGGVGDNVTIRFCTDN-PG-PWFLHCHID 456 (495)
T ss_dssp CEEEEECTTCCCCCSSSCCEESEEECCSTTCEEEEEEECCS-CE-EEEEEESCH
T ss_pred cEEEEecCCCCCcccCCCCCccEEEcCCCCcEEEEEEEcCC-Ce-eEEEEecch
Confidence 999999988653 578899999997 999999999995 67 777888764
No 53
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=99.40 E-value=6.3e-13 Score=139.35 Aligned_cols=94 Identities=16% Similarity=0.164 Sum_probs=74.1
Q ss_pred CCceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCc
Q 012003 46 LGDKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQI 125 (473)
Q Consensus 46 dG~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~ 125 (473)
+++...+|++|+++|+|+|++++||+|+++|+|.....-. +||+.... .|+ ...|.||++++|+|++ +++
T Consensus 497 ~~v~V~m~~~n~~f~pp~I~V~~Gd~V~~~ltN~d~~~Dv--~Hgf~ip~----~gv---~~~i~PG~t~t~~Fta-~~p 566 (595)
T 1fwx_A 497 NKVRVYMSSVAPSFSIESFTVKEGDEVTVIVTNLDEIDDL--THGFTMGN----YGV---AMEIGPQMTSSVTFVA-ANP 566 (595)
T ss_dssp TEEEEEEEEETTEESCSEEEEETTCEEEEEEEECCCSTTC--CEEEEETT----TTE---EEEECTTCEEEEEEEC-CSC
T ss_pred CccceeEEEecCcccCCEEEEECCCEEEEEEEeCCCCCCc--eeeEEecC----CCc---ceeeCCCCeEEEEEEC-CCC
Confidence 5678899999999999999999999999999998653111 34443321 122 3679999999999998 589
Q ss_pred cceeeccCh---hhhhcCCeeeEEEEEcC
Q 012003 126 GSFFYFPSL---DFQRAAGGYGGIIINNR 151 (473)
Q Consensus 126 Gt~wYH~H~---~~q~~~Gl~G~liV~~~ 151 (473)
|+||||||. ..| .||+|.|+|+++
T Consensus 567 GtY~yhC~e~Cg~~H--~gM~G~IiV~p~ 593 (595)
T 1fwx_A 567 GVYWYYCQWFCHALH--MEMRGRMLVEPK 593 (595)
T ss_dssp EEEEEECCSCCSTTC--TTCEEEEEEECC
T ss_pred EEEEEECCCCCCCCc--cCCEEEEEEEcC
Confidence 999999993 233 399999999975
No 54
>1aoz_A Ascorbate oxidase; oxidoreductase(oxygen acceptor); HET: NAG; 1.90A {Cucurbita pepo var} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 1aso_A* 1asp_A* 1asq_A*
Probab=99.37 E-value=1.5e-11 Score=130.14 Aligned_cols=226 Identities=10% Similarity=0.061 Sum_probs=137.3
Q ss_pred eEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEE-CCCccceeeccChh
Q 012003 63 ILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQV-KDQIGSFFYFPSLD 135 (473)
Q Consensus 63 ~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~-~~~~Gt~wYH~H~~ 135 (473)
.|+|++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||+++..+++ .+.+|.||-+++..
T Consensus 205 ~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~i~pgqR~dvlv~~~~~~~g~y~i~~~~~ 283 (552)
T 1aoz_A 205 IFHVSPKKTYRIRIASTTALAALNFAIGNHQLLV-VEADGNYVQPFYTSDIDIYSGESYSVLITTDQNPSENYWVSVGTR 283 (552)
T ss_dssp CEEECTTCEEEEEEEECCSSCEEEEEETTCCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCSCTTCCEEEEEEEE
T ss_pred EEEEcCCCEEEEEEEcccccceEEEEEcCcEEEE-EEECCcccCceEEeEEEEcCCcEEEEEEEcCCCCCCCEEEEEEcc
Confidence 8999999999999999965 45779999986542 45899753 34568999999999998 33489999998854
Q ss_pred hhhcCCee--eEEEEEcCCCCCCCCCCCCCceEEEEeeceecchHHHHH---hhh---CC----------------CCCC
Q 012003 136 FQRAAGGY--GGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHKKLRK---DVE---NG----------------VDLG 191 (473)
Q Consensus 136 ~q~~~Gl~--G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~~~~~---~~~---~~----------------~~~~ 191 (473)
.-...... +.|-.........+... .... ..|.. ....... .+. .. ....
T Consensus 284 ~~~~~~~~~~ail~y~~~~~~~~p~~~-~p~~----p~~~~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 357 (552)
T 1aoz_A 284 ARHPNTPPGLTLLNYLPNSVSKLPTSP-PPQT----PAWDD-FDRSKNFTYRITAAMGSPKPPVKFNRRIFLLNTQNVIN 357 (552)
T ss_dssp SSCCCSCCEEEEEEETTSCTTSCCSSC-CCCC----CCTTC-HHHHHHHHTTCCBCTTCCCCCSSCSEEEEEEEEEEEET
T ss_pred cCCCCCccEEEEEEECCCCCCCCCCCC-CCCC----Ccccc-ccccccccccccccCCCCCCCCCCcEEEEEEEeeccCC
Confidence 21011122 22222222110000000 0000 00000 0000000 000 00 0000
Q ss_pred CCCeEEEcCCCCCCCCCC----------------cC------------CCC-----CCceEEEEeCCcEEEEEEeEeCCC
Q 012003 192 VPDGILINGLGPYRYDAA----------------IV------------PDG-----IPYQLINVEPGKTYRLRVHNVGIS 238 (473)
Q Consensus 192 ~~~~~liNG~~~~~~~~~----------------~~------------~~~-----~~~~~~~v~~G~~~rlRliN~~~~ 238 (473)
....+.|||+.+...... .. ... .....+.++.|++++|.|.|.+..
T Consensus 358 ~~~~w~iNg~s~~~p~~P~L~~~~~~~~g~~~~~~p~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~g~~v~ivi~N~~~~ 437 (552)
T 1aoz_A 358 GYVKWAINDVSLALPPTPYLGAMKYNLLHAFDQNPPPEVFPEDYDIDTPPTNEKTRIGNGVYQFKIGEVVDVILQNANMM 437 (552)
T ss_dssp TEEEEEETTEEECCCSSCHHHHHHTTCTTSSCCSCCCSCCCTTCCTTSCCCCTTCEEECCCEEECTTCEEEEEEEECCCS
T ss_pred CeEEEEECCCccCCCCCCHHHHHhhcCccccccCCCccccccccccccccccccccccceEEEecCCCEEEEEEeCCccc
Confidence 012477888754211000 00 000 012458899999999999998753
Q ss_pred -----ceeEEEEeCceeEEEee-cCce----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 239 -----TSLNFRIQNHNLLLVET-EGSY----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 239 -----~~~~~~i~gh~~~via~-DG~~----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
..|.||||||.|+|++. +|.+ ..|...|++.+.+|+.+.|.+++++ +| .|.+.++..
T Consensus 438 ~~~~~~~HP~HLHGh~F~Vl~~g~G~~~~~~~~~~n~~~p~~RDTv~vpp~g~v~Irf~aDN-PG-~W~~HCHi~ 510 (552)
T 1aoz_A 438 KENLSETHPWHLHGHDFWVLGYGDGKFSAEEESSLNLKNPPLRNTVVIFPYGWTAIRFVADN-PG-VWAFHCHIE 510 (552)
T ss_dssp STTCCCCEEEEETTCCEEEEEEEESSCCGGGGGGSCCSSCCEESEEEECTTEEEEEEEECCS-CE-EEEEEESSH
T ss_pred ccccCCCCCEEEcCCceEEEecccCccCcccccccccCCCCccCeEEeCCCceEEEEEEcCC-Ce-EEEEEeeeh
Confidence 36999999999999998 4653 2467899999999999999999995 67 777888765
No 55
>1zpu_A Iron transport multicopper oxidase FET3; ferroxidase, oxidoreduc; HET: NAG BMA MAN NDG; 2.80A {Saccharomyces cerevisiae}
Probab=99.35 E-value=7.1e-11 Score=124.28 Aligned_cols=243 Identities=11% Similarity=0.100 Sum_probs=148.1
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECC
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~ 123 (473)
...+++||+. .|+|+|++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||+++..+++.+
T Consensus 167 ~d~~liNG~~-~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~P~~~~~l~l~~gqR~dvlv~~~~ 244 (534)
T 1zpu_A 167 PQNLIVNNTM-NLTWEVQPDTTYLLRIVNVGGFVSQYFWIEDHEMTV-VEIDGITTEKNVTDMLYITVAQRYTVLVHTKN 244 (534)
T ss_dssp CSEEEETTBS-SCEEECCSSCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEEEEEEECCS
T ss_pred CceEEECCCC-ceEEEEECCCEEEEEEEeccCCceEEEEEcCCeeEE-EeccCcCccccEeceEEECccceEEEEEEcCC
Confidence 3578999996 599999999999999999965 45788998876542 45799753 3456899999999999853
Q ss_pred C-ccceeeccChhhhhc------CCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceec----------chHHHHHhhhC
Q 012003 124 Q-IGSFFYFPSLDFQRA------AGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTK----------SHKKLRKDVEN 186 (473)
Q Consensus 124 ~-~Gt~wYH~H~~~q~~------~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~----------~~~~~~~~~~~ 186 (473)
+ .|.||.+........ ....+..|++=......+.+....++...+.|.... ....+...+..
T Consensus 245 ~~~~~y~i~~~~~~~~~~~~~~~~~~~~~ail~y~~~~~~p~~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~l~~~~ 324 (534)
T 1zpu_A 245 DTDKNFAIMQKFDDTMLDVIPSDLQLNATSYMVYNKTAALPTQNYVDSIDNFLDDFYLQPYEKEAIYGEPDHVITVDVVM 324 (534)
T ss_dssp CSSCCEEEEEEECGGGSSSCCTTCCCEEEEEEESCTTSCBCCCCCCSCSSCSCCGGGCCBSSCCCCCCSCSEEEEEEEEE
T ss_pred CCCCcEEEEEeccccccccCCCCCCcceEEEEEeCCCCCCCCCCcccccccccccccceeCCCCCCCCCCCeEEEEEEEe
Confidence 3 578999876432110 011222333211111101000000000000000000 00000000000
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCC------------cCCC--CCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEE
Q 012003 187 GVDLGVPDGILINGLGPYRYDAA------------IVPD--GIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLL 252 (473)
Q Consensus 187 ~~~~~~~~~~liNG~~~~~~~~~------------~~~~--~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~v 252 (473)
.........+.|||+.+..-... ..+. ......+.++.|++++|.|.|.+.. .|.||||||.|+|
T Consensus 325 ~~~~~~~~~~~iNg~s~~~~~~P~L~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~v~ivi~N~~~~-~HP~HLHGh~F~V 403 (534)
T 1zpu_A 325 DNLKNGVNYAFFNNITYTAPKVPTLMTVLSSGDQANNSEIYGSNTHTFILEKDEIVEIVLNNQDTG-THPFHLHGHAFQT 403 (534)
T ss_dssp EECTTSCEEEEETTBCCCCCSSCHHHHHTTSGGGTTCGGGGCSSSCEEEECTTCEEEEEEEECSSS-CEEEEETTCCEEE
T ss_pred eccCCceeEEEECCCcccCCCCCceeeecccCcccCCCcccCCCceEEEeCCCCEEEEEEeCCCCC-CCCeEecCCceEE
Confidence 00001123578999876321000 0000 0013568999999999999998754 8999999999999
Q ss_pred EeecCc-----------e---------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 253 VETEGS-----------Y---------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 253 ia~DG~-----------~---------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
++.++. + ..|...|++.+.||+.+.|.+++++ +| .|.+.++..
T Consensus 404 l~~~~~~~~~~~G~p~~~~~~~~~~~~~~p~~RDTv~V~pgg~v~IrF~aDN-PG-~W~~HCHi~ 466 (534)
T 1zpu_A 404 IQRDRTYDDALGEVPHSFDPDNHPAFPEYPMRRDTLYVRPQSNFVIRFKADN-PG-VWFFHCHIE 466 (534)
T ss_dssp EEECCCCCGGGTCCCCCCBTTBCCCCCSSCEEESEEEECTTCEEEEEEECCS-CE-EEEEEECCH
T ss_pred EeecCCccccccCcccccCccccccccCCCCeeeEEEeCCCCEEEEEEEeCC-Ce-eEEEEeCch
Confidence 998853 1 1367899999999999999999985 67 788888764
No 56
>3pxl_A Laccase; 4-copper protein, metal-binding, oxidoreductase, type-2 Cu-D; HET: NAG BMA MAN; 1.20A {Trametes hirsuta} PDB: 3fpx_A* 3v9c_A* 3div_A* 2h5u_A* 2xyb_A* 1kya_A* 1gyc_A* 2qt6_A* 2hrg_A* 2hrh_A* 4a2f_A* 2vdz_A* 4a2d_A* 4a2e_A* 4a2g_A* 4a2h_A* 2ve0_A* 2vds_A* 2hzh_A* 3kw7_A*
Probab=99.34 E-value=3.6e-11 Score=125.23 Aligned_cols=243 Identities=10% Similarity=0.069 Sum_probs=149.2
Q ss_pred EEEEEEcCCC--------CCceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCce
Q 012003 50 QQVIGINGQF--------PGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNW 115 (473)
Q Consensus 50 ~~~~~~Ng~~--------pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~ 115 (473)
...+++||+- +-|.|+|++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||++
T Consensus 166 ~d~~liNG~~~~~~~~~~~~~~~~v~~G~~~RlRliNa~~~~~~~~~i~gh~~~v-ia~DG~~~~P~~~~~l~i~pGqR~ 244 (499)
T 3pxl_A 166 ADATLINGKGRAPSDSVAELSVIKVTKGKRYRFRLVSLSCNPNHTFSIDGHNLTI-IEVDSVNSQPLEVDSIQIFAAQRY 244 (499)
T ss_dssp CSEEEETTBCCCTTCTTCCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESBEEECTTCEE
T ss_pred CcEEEECCCCcCCCCCCCCcceEEEcCCCEEEEEEEecCCCeeEEEEECCCeEEE-EEECCcccCceEeeeEEECCCcEE
Confidence 4678999973 3479999999999999999864 55789999986543 56899863 23568999999
Q ss_pred EEEEEECCCccceeeccChh--hh-hcCCeeeEEEEEcCCCCCCCCCCCCCceEEEEeeceecchH-----------HHH
Q 012003 116 TYQFQVKDQIGSFFYFPSLD--FQ-RAAGGYGGIIINNRDVIPLPFAVPDGDITIFISDWYTKSHK-----------KLR 181 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~--~q-~~~Gl~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~~~~~~-----------~~~ 181 (473)
+..+++.+.+|.||..+... .+ ...|..-+++.........+........ ..+.+....... ...
T Consensus 245 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~ail~Y~~~~~~~p~~~~~~~~-~~~~~~~L~p~~~~~~p~~~~~~~~d 323 (499)
T 3pxl_A 245 SFVLDANQAVDNYWIRANPNFGNVGFDGGINSAILRYDGAPAVEPTTNQTTSV-KPLNEVDLHPLVSTPVPGAPSSGGVD 323 (499)
T ss_dssp EEEEECCSCSSEEEEEEEESSSSCSCGGGTTEEEEEETTSCSSCCCCCCCCCS-SBCCGGGCCBSSCCCCSSCSSTTCSS
T ss_pred EEEEECCCCCceEEEEEecccCccccCCCceEEEEEeCCCCCCCCCCCCCCCC-cccccccccccccccCCCcccCCCCc
Confidence 99999964469999987632 11 1112222333333221111110000000 000010000000 000
Q ss_pred HhhhCCCCCCCCCeEEEcCCCCCCCCCC-----cCC------CCCCceEEEEeCCcEEEEEEeEeC--CCceeEEEEeCc
Q 012003 182 KDVENGVDLGVPDGILINGLGPYRYDAA-----IVP------DGIPYQLINVEPGKTYRLRVHNVG--ISTSLNFRIQNH 248 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~liNG~~~~~~~~~-----~~~------~~~~~~~~~v~~G~~~rlRliN~~--~~~~~~~~i~gh 248 (473)
..+..... .....+.|||+.+..-... ..+ .......+.++.|++++|.|.|.+ ....|.||+|||
T Consensus 324 ~~~~l~~~-~~~~~w~iNg~s~~~~~~P~L~~~~~g~~~~~~~~~~~~v~~~~~g~~V~ivl~~~~n~~~~~HP~HLHGh 402 (499)
T 3pxl_A 324 KAINMAFN-FNGSNFFINGASFVPPTVPVLLQILSGAQTAQDLLPSGSVYVLPSNASIEISFPATAAAPGAPHPFHLHGH 402 (499)
T ss_dssp EEEECCEE-ECSSCEEETTBCCCCCSSCHHHHHHTTCCSTTTSSSTTSEEEECTTCEEEEEEECCTTSCSCSCEEEETTC
T ss_pred EEEEEEEE-ecCcEEEEcCEecCCCCCchhhhhhcCCccccccCCCceeEEecCCCEEEEEEecCcccCCCCccceecCC
Confidence 00000000 0123688999886321100 000 011246789999999999999422 234799999999
Q ss_pred eeEEEeecCcee----eeeeeeEEEEcC---CceEEEEEEeCCCCCcceEEEEeec
Q 012003 249 NLLLVETEGSYT----VQQNYTNMDIHV---GQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 249 ~~~via~DG~~~----~p~~~d~v~l~p---GeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.|+|++.+|... .|...|++.+.+ |+...+.+++++ +| .+.+.++..
T Consensus 403 ~F~Vl~~~g~~~~n~~~P~~rDtv~v~~~~pg~~~~irf~adn-PG-~W~~HCHi~ 456 (499)
T 3pxl_A 403 TFAVVRSAGSTVYNYDNPIFRDVVSTGTPAAGDNVTIRFDTNN-PG-PWFLHCHID 456 (499)
T ss_dssp CEEEEECTTCCCCCSSSCCEESEEECCCGGGTCEEEEEEECCS-CE-EEEEEESSH
T ss_pred cEEEEeccCCcccccCCCCccceEEcCCcCCCcEEEEEEEcCC-Cc-eEEEEeCCh
Confidence 999999888543 578899999986 999999999995 67 677888764
No 57
>3od3_A Blue copper oxidase CUEO; multicopper oxidase, Cu(I) oxidase, oxidoreductase; 1.10A {Escherichia coli} PDB: 1n68_A 2fqd_A* 2fqe_A* 2fqf_A* 2fqg_A* 3nsd_A 1kv7_A 3pau_A 3pav_A 3nsf_A 1pf3_A 3qqx_A 3nsc_A 3nt0_A 3uad_A 3uaa_A 3uac_A 3uab_A 3uae_A 3nsy_A ...
Probab=99.33 E-value=2.8e-11 Score=125.38 Aligned_cols=249 Identities=14% Similarity=0.070 Sum_probs=153.5
Q ss_pred EEEEEEEEEEecCCC--------------ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee-CCCCCCCC
Q 012003 33 FYDWTISYVTASPLG--------------DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW-NGVQHRKN 96 (473)
Q Consensus 33 ~~~l~~~~~~~~~dG--------------~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~-HG~~~~~~ 96 (473)
++.|.++......+| .....+++||+. .|.+.+ +|+++++||.|... ....+++ +|.... .
T Consensus 152 d~~lvl~D~~~~~~g~~~~~~~~~~~~~g~~gd~~lvNG~~-~p~~~v-~g~~~RlRliNas~~~~~~l~i~dg~~~~-v 228 (488)
T 3od3_A 152 DVPVIVQDKKFSADGQIDYQLDVMTAAVGWFGDTLLTNGAI-YPQHAA-PRGWLRLRLLNGCNARSLNFATSDNRPLY-V 228 (488)
T ss_dssp EEEEEEEEECBCTTSSBCCCCSHHHHHHCCCCSEEEETTBS-SCEEEE-EEEEEEEEEEECCSSCCEEEEETTCCCEE-E
T ss_pred ceeEEEEEeeecCCCceeccccccccccCCCCCEEEEcCCc-CccEec-CCCEEEEEEEccCCCceeeeeecCCCeEE-E
Confidence 566777766554443 233578999996 488876 67899999999864 4567887 676533 2
Q ss_pred CCCCCCC----C--CCcccCCCCceEEEEEECCCccceeeccChhhhh----c--CCeeeEEEEEc---CCCCCCCC---
Q 012003 97 SWQDGVL----G--TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQR----A--AGGYGGIIINN---RDVIPLPF--- 158 (473)
Q Consensus 97 ~~~DGv~----~--tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~----~--~Gl~G~liV~~---~~~~~~~~--- 158 (473)
.+.||.+ . ....|.|||+++..++++ +.++|+.-+...... . +.-.-.+-|.+ +.....|.
T Consensus 229 Ia~DG~~l~~P~~~~~l~l~pGeR~dvlv~~~-~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~P~~L~ 307 (488)
T 3od3_A 229 IASDGGLLPEPVKVSELPVLMGERFEVLVEVN-DNKPFDLVTLPVSQMGMAIAPFDKPHPVMRIQPIAISASGALPDTLS 307 (488)
T ss_dssp EEETTEEEEEEEEESCEEECTTCEEEEEEEEC-TTCCEEEEECCCSSTTTTSTTTTSCEEEEEEEEEEEECCCCCCSCCC
T ss_pred EEeCCCcccCccEeceEEECCCCEEEEEEEeC-CCceEEEEEeccCCCCcccccccCccceeEecccccCCCCCCCcccc
Confidence 5689953 2 346699999999999996 577777655421110 0 00001122222 11111110
Q ss_pred -----CC----CCCceEEEEeec-eecchHHHHHhh----hCC-----------CC-C---------CCCCeEEEcCCCC
Q 012003 159 -----AV----PDGDITIFISDW-YTKSHKKLRKDV----ENG-----------VD-L---------GVPDGILINGLGP 203 (473)
Q Consensus 159 -----~~----~~~e~~l~l~d~-~~~~~~~~~~~~----~~~-----------~~-~---------~~~~~~liNG~~~ 203 (473)
+. ..+++.+.+... .......+.+.. ..+ .. . .....++|||+.+
T Consensus 308 ~~~~~~~~~~~~~r~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~g~~~~~~~~~~ING~~~ 387 (488)
T 3od3_A 308 SLPALPSLEGLTVRKLQLSMDPMLDMMGMQMLMEKYGDQAMAGMDHSQMMGHMGHGNMNHMNHGGKFDFHHANKINGQAF 387 (488)
T ss_dssp CCCCCCCCTTCCEEEEEEEECHHHHHHHHHHHHHHHGGGGGTTSCHHHHCCCSCCCCCCCSCCCGGGCGGGCEEETTBCC
T ss_pred cCCCCcccccccceEEEEEecccccccccccccccccccccccccccccccccccCccccccccccccccceeeECCeeC
Confidence 00 112333433210 000000010000 000 00 0 0112479999996
Q ss_pred CCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeee---eeeeEEEEcCCceEEEEE
Q 012003 204 YRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQ---QNYTNMDIHVGQSFSFLV 280 (473)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p---~~~d~v~l~pGeR~dv~v 280 (473)
. ...+.++++.|+++||+|+|.+....|.||||||.|+|++.||....+ ...|++.|. ||+..|++
T Consensus 388 ~----------~~~~~~~~~~G~~e~w~l~N~~~~~~Hp~HlHg~~F~Vl~~~g~~~~~~~~~~kDTV~v~-g~~~~i~~ 456 (488)
T 3od3_A 388 D----------MNKPMFAAAKGQYERWVISGVGDMMLHPFHIHGTQFRILSENGKPPAAHRAGWKDTVKVE-GNVSEVLV 456 (488)
T ss_dssp C----------TTCCSEECCBSSCEEEEEECTTCCCCEEEEETTCCBEEEEBTTBCCCGGGSSSBSEEEES-SSEEEEEE
T ss_pred C----------CCCCceEcCCCCEEEEEEEeCCCCCCccEEEcCceEEEeccCCCccccccCCceeEEEeC-CCEEEEEE
Confidence 2 123668999999999999999855589999999999999999987643 468999999 99999999
Q ss_pred EeCCCC---CcceEEEEeec
Q 012003 281 TTDQNA---SSDYYIVASPR 297 (473)
Q Consensus 281 ~~~~~~---g~~y~i~~~~~ 297 (473)
++++.+ | .|.+.++..
T Consensus 457 ~f~~~~~~~G-~~m~HCH~l 475 (488)
T 3od3_A 457 KFNHDAPKEH-AYMAHCHLL 475 (488)
T ss_dssp CBCSCCCGGG-CEEEEESSH
T ss_pred EeccCCCCCC-CEEEeCCch
Confidence 998643 4 677777653
No 58
>2q9o_A Laccase-1; multicopper oxidase, 2-OXOH oxidoreductase; HET: OHI NAG MAN GOL; 1.30A {Melanocarpus albomyces} SCOP: b.6.1.3 b.6.1.3 b.6.1.3 PDB: 3fu7_A* 3fu8_A* 3fu7_B* 1gw0_A* 2ih9_A* 2ih8_A* 3fu9_A* 3qpk_A* 3dkh_A* 3pps_A*
Probab=99.32 E-value=4.2e-11 Score=126.78 Aligned_cols=245 Identities=9% Similarity=0.028 Sum_probs=147.5
Q ss_pred EEEEEEcCCCC--------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCce
Q 012003 50 QQVIGINGQFP--------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNW 115 (473)
Q Consensus 50 ~~~~~~Ng~~p--------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~ 115 (473)
...+++||+.. -|.|++++|+++++||.|... ....+|++|..+.. .+.||.+. ....|.|||++
T Consensus 195 ~d~~liNG~~~~~~~~~g~~~~~~v~~g~~~RlRliNa~~~~~~~~~i~gh~~~v-i~~DG~~~~p~~~~~l~l~pgeR~ 273 (559)
T 2q9o_A 195 SDNVLINGTAVNPNTGEGQYANVTLTPGKRHRLRILNTSTENHFQVSLVNHTMTV-IAADMVPVNAMTVDSLFLAVGQRY 273 (559)
T ss_dssp BSEEEETTBCBCTTTCCBCCCEEEECTTCEEEEEEEECCSSCCEEEEETTBCEEE-EEETTEEEEEEEESCEEECTTCEE
T ss_pred cceeEECCccccCcCCCCCceEEEEcCCCEEEEEEEecCCCceEEEEECCCceEE-EecCCcccCceEeCeEEEccEEEE
Confidence 35789999873 379999999999999999975 45789999986542 45799863 34568999999
Q ss_pred EEEEEECCCccceeeccCh--hhhh--cCCee-eEEEEEcCCCCCCCCCC----CC----CceEE-EEeeceecch---H
Q 012003 116 TYQFQVKDQIGSFFYFPSL--DFQR--AAGGY-GGIIINNRDVIPLPFAV----PD----GDITI-FISDWYTKSH---K 178 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~--~~q~--~~Gl~-G~liV~~~~~~~~~~~~----~~----~e~~l-~l~d~~~~~~---~ 178 (473)
+..+++.+.+|.||..... .... ..... .+++.........|... .+ .+..+ -+........ .
T Consensus 274 dvlv~~~~~~g~y~i~a~~~~~~~~~~~~~~~~~ail~y~~~~~~~P~~~~~~~~~~~~~~~~~l~p~~~~~~p~~~~~~ 353 (559)
T 2q9o_A 274 DVVIDASRAPDNYWFNVTFGGQAACGGSLNPHPAAIFHYAGAPGGLPTDEGTPPVDHQCLDTLDVRPVVPRSVPVNSFVK 353 (559)
T ss_dssp EEEEECCSCSSEEEEEEECCGGGTTCCBSSSCCEEEEEETTSCCSCCCCCCCCCCCCTTCCCSCCCBSSCCBCCCTTCCC
T ss_pred EEEEECCCCCCcEEEEEEeccccccCCCCCCceeEEEEECCCCCCCCCCCCCcCCCcccccccccccCCCCCCCCccccc
Confidence 9999986457999988764 2110 11111 22322221111111100 00 00000 0000000000 0
Q ss_pred --HHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCc------CCC---CCCceEEEEeCCcEEEEEEeEeCC----CceeEE
Q 012003 179 --KLRKDVENGVDLGVPDGILINGLGPYRYDAAI------VPD---GIPYQLINVEPGKTYRLRVHNVGI----STSLNF 243 (473)
Q Consensus 179 --~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~------~~~---~~~~~~~~v~~G~~~rlRliN~~~----~~~~~~ 243 (473)
.+...+...........+.|||+.+....... .+. ......+.++.++++++.++|... ...|.|
T Consensus 354 ~~~~~~~~~~~~~~~~~~~~~iNg~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~v~~~vi~n~~~~~~~~~HP~ 433 (559)
T 2q9o_A 354 RPDNTLPVALDLTGTPLFVWKVNGSDINVDWGKPIIDYILTGNTSYPVSDNIVQVDAVDQWTYWLIENDPEGPFSLPHPM 433 (559)
T ss_dssp CGGGEEEEEEECSSSSSCEEEETTBCCCCCTTSCHHHHHHHTCCCCCGGGCEEEECCSSCEEEEEEEECTTSSCCCCEEE
T ss_pred ceeEEEEEEeecCCCceEEEEECCEecccCCCCCcHhHhhcCCccCCCCceEEEcCCCCEEEEEEEeCCCccccCCCCcE
Confidence 00000000000111246899999863211100 000 011346888888888887887754 458999
Q ss_pred EEeCceeEEEeecC---------c-e-----------eeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 244 RIQNHNLLLVETEG---------S-Y-----------TVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 244 ~i~gh~~~via~DG---------~-~-----------~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
|||||.|+|++.++ . + ..|...|++.+.+|+++.|.+++++ +| .|.+.++..
T Consensus 434 HLHGh~F~Vl~~g~~~~~~~~~~g~~~~~~~~~~~n~~~p~~RDTV~Vp~~g~v~IrF~adN-PG-~W~~HCHil 506 (559)
T 2q9o_A 434 HLHGHDFLVLGRSPDVPAASQQRFVFDPAVDLARLNGDNPPRRDTTMLPAGGWLLLAFRTDN-PG-AWLFHCHIA 506 (559)
T ss_dssp EESSSCEEEEEESCCCCTTSCCCCCCCHHHHGGGCCCBSCCEESEEEECTTSEEEEEEECCS-CE-EEEEEECCH
T ss_pred EECCCceEEEecccccccccccccccCccccccccccCCCCccceEEccCCccEEEEEEcCC-Ce-eEEEEecch
Confidence 99999999999986 2 2 1366899999999999999999995 67 787888775
No 59
>3aw5_A Multicopper oxidase; beta barrel, oxidoreductase; 2.00A {Pyrobaculum aerophilum}
Probab=99.31 E-value=2.7e-11 Score=124.86 Aligned_cols=213 Identities=12% Similarity=0.054 Sum_probs=140.0
Q ss_pred eEEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeee--CC---CCCCCCCCCCCCCC------CCcccCCCCceE
Q 012003 49 KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTW--NG---VQHRKNSWQDGVLG------TNCPIPAGWNWT 116 (473)
Q Consensus 49 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~--HG---~~~~~~~~~DGv~~------tq~~I~PG~~~~ 116 (473)
....+++||+. .|+|+|++| ++++||.|... ....+|+ +| .... ..+.||.+. ....|.|||+++
T Consensus 168 ~~~~~liNG~~-~p~~~v~~g-~~RlRliNa~~~~~~~~~i~~~~~~~~~~~-via~DG~~~~~P~~~~~l~l~pgeR~d 244 (448)
T 3aw5_A 168 LGNAVLVNGVK-DAVFKLSGG-SYRLRLVNGSNARLYMLSIVKKNGDVVPMR-LIAVDQGFLARPIEVRALFLAPAERAE 244 (448)
T ss_dssp CCSEEEETTEE-TCEEEEEEE-EEEEEEEECSSSCCEEEEEEETTSCEECEE-EEEETTEEEEEEEEESCEEECTTCEEE
T ss_pred cccEEEECCcc-cceEEECCC-eEEEEEEcCCCcceEEEEEEcCCCCCccEE-EEEeCCCccCCceEeceEEECCcceEE
Confidence 34678999996 599999999 99999999965 5678999 88 5433 245799753 235689999999
Q ss_pred EEEEECCCccceeeccChhhhhcC------------C-eeeE--EEEEcCCCCCCCC--C-------CCCCceEEEEeec
Q 012003 117 YQFQVKDQIGSFFYFPSLDFQRAA------------G-GYGG--IIINNRDVIPLPF--A-------VPDGDITIFISDW 172 (473)
Q Consensus 117 Y~f~~~~~~Gt~wYH~H~~~q~~~------------G-l~G~--liV~~~~~~~~~~--~-------~~~~e~~l~l~d~ 172 (473)
..++++ .|.||..++....... + .... |.+......+.+. . ....+..+.+..
T Consensus 245 vlv~~~--~~~y~l~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~L~~lp~~~~~~~~~~~~~l~~- 321 (448)
T 3aw5_A 245 VVVELG--EGVYLLKNTPFDPMHLEMGHGMQEALPEGSEYTIATFLVEGKGEAVPVEALSDPPPEPPKPTRTRRFALSL- 321 (448)
T ss_dssp EEEEEC--SEEEEEEECCCCCCCCTTSSCCCCSSCTTSCEEEEEEEEEEECCCCCCCCCSCCCCCCCCCSEEEEEEEEE-
T ss_pred EEEECC--CCceEEEccccccccCccccccccccCCCCCceEEEEEEcCCCCCCCccccCCCCCCCCCCCceEEEEEeC-
Confidence 999985 4789988764211000 0 1112 2222211110000 0 000111111110
Q ss_pred eecchHHHHHhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEE-EeCCcEEEEEEeEeCCCceeEEEEeCceeE
Q 012003 173 YTKSHKKLRKDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLIN-VEPGKTYRLRVHNVGISTSLNFRIQNHNLL 251 (473)
Q Consensus 173 ~~~~~~~~~~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~-v~~G~~~rlRliN~~~~~~~~~~i~gh~~~ 251 (473)
+ ...+.|||+.+.. ..+.+. ++.|++++|+|.|.+....|.||||||.|+
T Consensus 322 --------------~-----~~~~~iNg~~~~~----------~~p~~~~~~~g~~v~~~i~N~~~~~~HP~HLHG~~F~ 372 (448)
T 3aw5_A 322 --------------S-----GMQWTINGMFWNA----------SNPLFEHVSVEGVELWEIVNDKASMPHPMHLHGFPMW 372 (448)
T ss_dssp --------------E-----TTEEEETTBCCCT----------TCTTCCCEEECEEEEEEEEECSSSCCEEEEESSSCBE
T ss_pred --------------C-----CceeeECCCcCCC----------CCCceeccCCCCeEEEEEEcCCCCCCcCEEECCceEE
Confidence 0 1258999998731 124466 899999999999988344899999999999
Q ss_pred EEeecCcee------------ee---eeeeEEEEcCCceEEEEEEeCCC--CCcceEEEEeec
Q 012003 252 LVETEGSYT------------VQ---QNYTNMDIHVGQSFSFLVTTDQN--ASSDYYIVASPR 297 (473)
Q Consensus 252 via~DG~~~------------~p---~~~d~v~l~pGeR~dv~v~~~~~--~g~~y~i~~~~~ 297 (473)
|++.+|... .| ...|++.+.||+++.+.+++.+. .. .|.+.++..
T Consensus 373 Vl~~~G~~~~~~~~~~~~~~~~p~~~~~rDTv~v~pg~~~~i~vrF~~~~adn-pw~~HCHil 434 (448)
T 3aw5_A 373 IIERKDSPRQVAELAVDNRGRLPTDLGLKDTVLIWPGETVKIVVNFDAKKRGQ-LFPFHCHNL 434 (448)
T ss_dssp EEEEESCCHHHHTTCCSTTCCCGGGGSCBSEEEECTTCEEEEEEEECGGGTTC-EEEEEESSH
T ss_pred EEEecCCCcccccccccccCCCccccCCccEEEeCCCCEEEEEEEecccCCCC-cEEEEcCCh
Confidence 999999774 23 47899999999999999777511 12 255666653
No 60
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=99.28 E-value=1.3e-11 Score=101.23 Aligned_cols=78 Identities=14% Similarity=0.132 Sum_probs=62.2
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccCCCCceEEEEEECCCccceeeccCh
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSL 134 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~ 134 (473)
+..|..+.|++++||+|++ +|..+.++++|+++. +||... .+..|.||++++|.| +++|+|||||+.
T Consensus 27 ~~~F~P~~i~v~~Gd~V~~--~N~d~~~H~v~~~~~-------~~g~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~~ 94 (105)
T 2ov0_A 27 KMKYETPELHVKVGDTVTW--INREAMPHNVHFVAG-------VLGEAALKGPMMKKEQAYSLTF---TEAGTYDYHCTP 94 (105)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTT-------TSSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred ecEEcCCEEEECCCCEEEE--EECCCCCEEEEEcCC-------CCCcccccccccCCCCEEEEEe---CCCEEEEEEeCC
Confidence 4455578999999999655 699888999999863 356554 455689999999988 379999999986
Q ss_pred hhhhcCCeeeEEEEE
Q 012003 135 DFQRAAGGYGGIIIN 149 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~ 149 (473)
+. ||.|.|+|+
T Consensus 95 H~----gM~G~i~V~ 105 (105)
T 2ov0_A 95 HP----FMRGKVVVE 105 (105)
T ss_dssp CT----TCEEEEEEC
T ss_pred CC----CCEEEEEEC
Confidence 43 999999984
No 61
>2g23_A PHS, phenoxazinone synthase; copper, metalloprotein, laccase, multicopper oxidase, hexamer; 2.30A {Streptomyces antibioticus} PDB: 3gyr_A
Probab=99.28 E-value=1.4e-10 Score=123.26 Aligned_cols=232 Identities=10% Similarity=-0.022 Sum_probs=144.4
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCCC-------CCCCCCCCCCCCC------C------Cccc
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNGV-------QHRKNSWQDGVLG------T------NCPI 109 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~-------~~~~~~~~DGv~~------t------q~~I 109 (473)
...+++||+. .|.+.|++| ++++||.|... ....+++.|. .+. ....||.+. . ...|
T Consensus 254 gd~~lVNG~~-~p~~~V~~g-~yRlRliNas~~r~~~l~i~~h~g~~~~~~~~-vIa~DG~~l~~P~~~~~~~~~~~l~l 330 (612)
T 2g23_A 254 GPYTTVNGRI-WPYADVDDG-WYRLRLVNASNARIYNLVLIDEDDRPVPGVVH-QIGSDGGLLPRPVPVDFDDTLPVLSA 330 (612)
T ss_dssp CSEEEETTEE-SCEEEEESS-EEEEEEEECCSSCCEEEEEECTTSCBCTTSEE-EEEETTEEEEEEEEECSSSSSSSEEE
T ss_pred CCEEEECCcc-CCeEEecCC-eEEEEEEecCCCeEEEEEEcCCCCccCCCcEE-EEEeCCeEccCCEEecccCcccEEEE
Confidence 3578999996 599999999 99999999864 5667888765 111 245799642 2 4568
Q ss_pred CCCCceEEEEEECCCccc-eeeccChhhhh------c----CCeeeEEEEEcCCC-CC--CCCC------CCCCc-----
Q 012003 110 PAGWNWTYQFQVKDQIGS-FFYFPSLDFQR------A----AGGYGGIIINNRDV-IP--LPFA------VPDGD----- 164 (473)
Q Consensus 110 ~PG~~~~Y~f~~~~~~Gt-~wYH~H~~~q~------~----~Gl~G~liV~~~~~-~~--~~~~------~~~~e----- 164 (473)
.|||+++.-+++.+.+|+ ++-..-..... . .+..--|.|..+.. +. .|.. ....+
T Consensus 331 ~pgeR~dvlVd~~~~~g~~~~L~~~~~~~~~g~~~~~~~~~~~~vm~f~V~~~~~~~~~~~P~~L~~~~~~l~~~~~~~~ 410 (612)
T 2g23_A 331 APAERFDLLVDFRALGGRRLRLVDKGPGAPAGTPDPLGGVRYPEVMEFRVRETCEEDSFALPEVLSGSFRRMSHDIPHGH 410 (612)
T ss_dssp CTTCEEEEEEECTTCTTCEEEEEECCTTSCTTSCBGGGTBSCCEEEEEEEECCSCCCCCCCCSSCCSSCCCCCTTSCCEE
T ss_pred CCcCeEEEEEECCCCCCCEEEEEeCCccCCCCccccccCccccceEEEEEccCCCCCCCCCChhhccccccCCcccccce
Confidence 999999999998654675 55554321110 0 11122255554321 11 1110 00000
Q ss_pred eEEEEe------------eceecchHHHHH-hhhC-C-----CCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCC
Q 012003 165 ITIFIS------------DWYTKSHKKLRK-DVEN-G-----VDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPG 225 (473)
Q Consensus 165 ~~l~l~------------d~~~~~~~~~~~-~~~~-~-----~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G 225 (473)
..+++. -|.......-.. .+.. + ........+.|||+.+. ..+.++++.|
T Consensus 411 r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~iNG~~~~-----------~~~~~~v~~G 479 (612)
T 2g23_A 411 RLIVLTPPGTKGSGGHPEIWEMAEVEDPADVQVPAEGVIQVTGADGRTKTYRRTAATFN-----------DGLGFTIGEG 479 (612)
T ss_dssp EEEEECCTTCTTSTTCCCEEEEEEEC-----CCSCTTEEEEECTTSCEEEEEEEECSTT-----------SCCCEEEETT
T ss_pred eEEeeccccccccccccceeeccccccccccccccccceeeeccCCceeEEEECCccCC-----------CCCceEecCC
Confidence 122221 011100000000 0000 0 00011235889999872 2477999999
Q ss_pred cEEEEEEeEeCCCceeEEEEeCceeEEEeecCce------------------------e---eeeeeeEEEEcCCceEEE
Q 012003 226 KTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSY------------------------T---VQQNYTNMDIHVGQSFSF 278 (473)
Q Consensus 226 ~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~------------------------~---~p~~~d~v~l~pGeR~dv 278 (473)
++++|+|+|.+.. .|.||||+|.|+|++.+|.. . ++...|++.+.|||++.|
T Consensus 480 ~~v~w~l~N~~~~-~HPiHlHg~~F~Vl~r~~~~~~~~~~~~~g~~~~~~~~~g~~~~~~~~e~~~kDTv~v~Pg~~~~i 558 (612)
T 2g23_A 480 THEQWTFLNLSPI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTPVRLDPDTPVPLAPNELGHKDVFQVPGPQGLRV 558 (612)
T ss_dssp CEEEEEEEECSSS-CEEEEESSCCEEEEEEEEEECTTEETTTTEESSCEEEEEEEECCCCTTSSSCBSEEEECSSEEEEE
T ss_pred CEEEEEEEeCCCC-CCCeEEcCceEEEecccCcccccccccccCcccccccccccccCCCcccccccCeEEECCCcEEEE
Confidence 9999999999854 89999999999999875421 1 123689999999999999
Q ss_pred EEEeCCCCCcceEEEEeec
Q 012003 279 LVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 279 ~v~~~~~~g~~y~i~~~~~ 297 (473)
.++++..+| .|.+.++..
T Consensus 559 ~~~~~~~pG-~w~~HCHil 576 (612)
T 2g23_A 559 MGKFDGAYG-RFMYHCHLL 576 (612)
T ss_dssp EEECCSCCE-EEEEEESSH
T ss_pred EEEeCCCCc-cEEEEeCch
Confidence 999995578 888888764
No 62
>1sdd_A Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3
Probab=99.24 E-value=5.2e-13 Score=130.91 Aligned_cols=99 Identities=16% Similarity=0.105 Sum_probs=67.6
Q ss_pred eEEEEEEcCCCCC--ceEEEecCCEEEEEEEECCCC--CceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCC
Q 012003 49 KQQVIGINGQFPG--PILNVTTNWNVVVNVKNDLDE--PLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQ 124 (473)
Q Consensus 49 ~~~~~~~Ng~~pg--P~i~v~~Gd~v~v~v~N~l~~--~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~ 124 (473)
...++++||+..+ |.|++++|++++++|.|.... .+++|+||.... .||.......|.||+++++.|++ ++
T Consensus 200 ~~~~~~ING~~~~~~p~l~v~~G~~vrlrliN~g~~~~~h~~hlhG~~~~----~dG~~~dtv~l~pger~~v~~~~-~~ 274 (306)
T 1sdd_A 200 SSLMYTVNGYVNGTMPDITVCAHDHISWHLIGMSSGPELFSIHFNGQVLE----QNHHKISAITLVSATSTTANMTV-SP 274 (306)
T ss_dssp CCEEECSSSCCSSCCCCCCCCCC------BBCCCSSSCEECCBCSSTTCE----ETTEECSCCCEETTCCBC--------
T ss_pred CCcceeeCCEecCCCcceEEcCCCEEEEEEEeCCCCCccEEEEECCcEee----eCCEEcceEEECCCcEEEEEEEc-CC
Confidence 3568999999864 899999999999999999754 578999997543 47765555789999999999999 57
Q ss_pred ccceeeccChhhhhcCCeeeEEEEEcCC
Q 012003 125 IGSFFYFPSLDFQRAAGGYGGIIINNRD 152 (473)
Q Consensus 125 ~Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (473)
+|+||||||...|..+||.|.|.|++..
T Consensus 275 pG~~~~hch~~~H~~~GM~~~~~V~~~~ 302 (306)
T 1sdd_A 275 EGRWTIASLIPRHFQAGMQAYIDIKNCA 302 (306)
T ss_dssp -CCCCCBCCSTTTGGGTCBCCC------
T ss_pred CeEEEEEeCChHHHhcCCeEEEEEecCC
Confidence 9999999999999999999999998643
No 63
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=99.23 E-value=1.4e-11 Score=101.17 Aligned_cols=83 Identities=16% Similarity=0.209 Sum_probs=63.7
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC-----CCCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL-----GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~-----~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
.+.|++++||+|++ +|.....+++|+|+.... ..+|.. .....+.||++++|.|++++++|+||||||
T Consensus 19 P~~i~v~~Gd~V~~--~n~~~~~H~~~~~~~~~~---~~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G~y~y~C~-- 91 (106)
T 2gim_A 19 PAKLTIKPGDTVEF--LNNKVPPHNVVFDAALNP---AKSADLAKSLSHKQLLMSPGQSTSTTFPADAPAGEYTFYCE-- 91 (106)
T ss_dssp SSEEEECTTCEEEE--EECSSSCCCBEECSSSST---TCCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSEEEEEECT--
T ss_pred CCEEEECCCCEEEE--EECCCCCceEEEeCCCCc---ccccccchhccccceeeCCCCEEEEEEecCCCCceEEEEeC--
Confidence 37999999998755 588777899999886432 123320 123458999999999987457999999999
Q ss_pred hhhcCCeeeEEEEEc
Q 012003 136 FQRAAGGYGGIIINN 150 (473)
Q Consensus 136 ~q~~~Gl~G~liV~~ 150 (473)
.|..+||.|.|+|++
T Consensus 92 ~H~~~GM~G~i~V~~ 106 (106)
T 2gim_A 92 PHRGAGMVGKITVAG 106 (106)
T ss_dssp TTGGGTCEEEEEECC
T ss_pred ChhhcCcEEEEEEcC
Confidence 677789999999963
No 64
>1sdd_B Coagulation factor V; copper-binding protein, cofactor, blood clottin; HET: NAG NDG; 2.80A {Bos taurus} SCOP: b.6.1.3 b.6.1.3 b.18.1.2 b.18.1.2
Probab=99.19 E-value=3e-11 Score=130.40 Aligned_cols=102 Identities=16% Similarity=0.108 Sum_probs=86.3
Q ss_pred eEEEEEEcCCC-CCceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCc
Q 012003 49 KQQVIGINGQF-PGPILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQI 125 (473)
Q Consensus 49 ~~~~~~~Ng~~-pgP~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~ 125 (473)
...++++||+. +.|+|++++|++++++|.|... ..+.+|+||..+.. ...||.......|.||+++++.|++. ++
T Consensus 225 ~~~~~~iNG~~~~~p~l~v~~G~~vrlrliN~~~~~~~h~~hlhG~~f~v-i~~d~~~~d~v~l~pg~r~~v~~~~~-~p 302 (647)
T 1sdd_B 225 SHEFHAINGMIYNLPGLRMYEQEWVRLHLLNLGGSRDIHVVHFHGQTLLE-NGTQQHQLGVWPLLPGSFKTLEMKAS-KP 302 (647)
T ss_dssp CCEEEEETTBSSCCCCCEEETTCEEEEEEEECCCTTCCEEEEETTCCEEE-CSSSCEEESSEEECTTEEEEEEEECC-SS
T ss_pred cCceeccCCEecCCCCeEEcCCCEEEEEEEeCCCCCcceeEEEcCcEEEE-ecCCCcccceEEECCCeEEEEEEEec-cc
Confidence 45789999997 5799999999999999999875 47999999987643 23465433557899999999999994 79
Q ss_pred cceeeccChhhhhcCCeeeEEEEEcCC
Q 012003 126 GSFFYFPSLDFQRAAGGYGGIIINNRD 152 (473)
Q Consensus 126 Gt~wYH~H~~~q~~~Gl~G~liV~~~~ 152 (473)
|+|+||||...+..+||.|.++|.++.
T Consensus 303 G~w~~hch~~~h~~~Gm~~~~~V~~~~ 329 (647)
T 1sdd_B 303 GWWLLDTEVGEIQRAGMQTPFLIVDRE 329 (647)
T ss_dssp EEEEEECCCHHHHTTTCEEEEEEECTT
T ss_pred eEeecccCcccccccccccceeeeccc
Confidence 999999999999999999999998653
No 65
>2wsd_A Spore coat protein A; oxidoreductase, multi-copper oxidase, sporulation, COTA- LAC copper centre; 1.60A {Bacillus subtilis} PDB: 1gsk_A 1hkp_A 1hkz_A 1hl0_A 1hl1_A 1of0_A* 1ogr_A 1uvw_A* 1w6l_A 1w6w_A 1w8e_A 2bhf_A 2x87_A 2x88_A* 4a67_A 4akq_A 4a68_A* 4akp_A* 4a66_A 4ako_A
Probab=99.17 E-value=1.7e-10 Score=120.97 Aligned_cols=217 Identities=12% Similarity=0.031 Sum_probs=138.2
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCCC-CceeeeCCC-CCCCCCCCCCCC----C--CCcccCCCCceEEEEEE
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLDE-PLLLTWNGV-QHRKNSWQDGVL----G--TNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~-~~siH~HG~-~~~~~~~~DGv~----~--tq~~I~PG~~~~Y~f~~ 121 (473)
...+++||+. .|.|.++.| ++++||.|.... ...+|+.|. .+. ..+.||.+ . ....|.|||+++..+++
T Consensus 230 ~d~~liNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~~~i~~~~~~~-via~DG~~~~~P~~~~~l~l~pgeR~dvlv~~ 306 (513)
T 2wsd_A 230 GETILVNGKV-WPYLEVEPR-KYRFRVINASNTRTYNLSLDNGGDFI-QIGSDGGLLPRSVKLNSFSLAPAERYDIIIDF 306 (513)
T ss_dssp CSEEEETTEE-SCEEECCSS-EEEEEEEECCSSCCEEEEETTCCCEE-EEEETTEEEEEEEEESEEEECTTCEEEEEEEC
T ss_pred cceEEECCcc-cceEEecCC-EEEEEEEccCCcceEEEEECCCCeEE-EEccCCCcccCceEeCeEEECCeeeEEEEEEC
Confidence 4678999997 589999885 999999999754 578999887 433 35689953 2 33568999999999998
Q ss_pred CCCccceeec-cCh--hhhhcCCe-eeEEEEEcCC--CC----CCCCCCCC----------CceEEEEeeceecchHHHH
Q 012003 122 KDQIGSFFYF-PSL--DFQRAAGG-YGGIIINNRD--VI----PLPFAVPD----------GDITIFISDWYTKSHKKLR 181 (473)
Q Consensus 122 ~~~~Gt~wYH-~H~--~~q~~~Gl-~G~liV~~~~--~~----~~~~~~~~----------~e~~l~l~d~~~~~~~~~~ 181 (473)
++.+|.++.- .-. +.....+. ...+-++... .. ..|..... .+..+.+...
T Consensus 307 ~~~~g~~~~l~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~~~~~p~~l~~~~~~~~~~~~~~~~~~l~~~--------- 377 (513)
T 2wsd_A 307 TAYEGESIILANSAGCGGDVNPETDANIMQFRVTKPLAQKDESRKPKYLASYPSVQHERIQNIRTLKLAGT--------- 377 (513)
T ss_dssp GGGTTCEEEEEECCCSSSSCCTTTTTEEEEEECCSCCSSCCCCCCCSBCSCCGGGCCCCEEEEEEEEEEEE---------
T ss_pred CCCCCcEEEEEecccccccCCCCCCcceEEEEeccCcccCccCCCCccccCCCCcccCCCcceEEEEEEee---------
Confidence 6446874331 111 00000001 1222222111 00 01100000 0011111110
Q ss_pred HhhhCCCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCc---
Q 012003 182 KDVENGVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGS--- 258 (473)
Q Consensus 182 ~~~~~~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~--- 258 (473)
++. .....++|||+.+. ....+.++.|++++|+|.|.+.. .|.||||||.|+|++.+|.
T Consensus 378 --~~~----~g~~~~~iNg~~~~-----------~~~~~~~~~g~~~~w~l~N~~~~-~HP~HlHG~~F~Vl~~~~~~~~ 439 (513)
T 2wsd_A 378 --QDE----YGRPVLLLNNKRWH-----------DPVTETPKVGTTEIWSIINPTRG-THPIHLHLVSFRVLDRRPFDIA 439 (513)
T ss_dssp --ECT----TSCEEEEETTBCTT-----------SCCCBCCBTTCEEEEEEEECSSS-CEEEEESSCCEEEEEEEEBCHH
T ss_pred --cCC----CCCceEeECCccCC-----------CcccEecCCCCEEEEEEEcCCCC-CcCEeEeCceEEEEEecCcccc
Confidence 000 01125789999862 12456889999999999998754 8999999999999998762
Q ss_pred ------------ee------eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 259 ------------YT------VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 259 ------------~~------~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
.. ++...|++.|.||+++.|++++++.+| .|.+.++..
T Consensus 440 ~~~~~~~~~~~~~~~~~~~~~~~~rDTv~v~pg~~~~i~~~f~dnpG-~w~~HCHil 495 (513)
T 2wsd_A 440 RYQESGELSYTGPAVPPPPSEKGWKDTIQAHAGEVLRIAATFGPYSG-RYVWHCHAL 495 (513)
T ss_dssp HHHHHCCCCBSSCCBCCCGGGSSCBSEEEECTTEEEEEEEECCSCCE-EEEEEESCH
T ss_pred cccccccccccCCCCCCCccccCcccEEEeCCCCEEEEEEEecCCCC-CEEEEcCCh
Confidence 10 224789999999999999999965678 888888765
No 66
>3abg_A Bilirubin oxidase; cleavage on PAIR of basic residues, glyco metal-binding, oxidoreductase; HET: NAG BMA NDG; 2.30A {Myrothecium verrucaria} PDB: 2xll_A*
Probab=99.16 E-value=1.7e-10 Score=121.29 Aligned_cols=229 Identities=14% Similarity=0.058 Sum_probs=138.1
Q ss_pred EEEEEEcCCCCCceEEEecCCEEEEEEEECCC-CCceeeeCC-------CCCCCCCCCCCCC----C--CCcccCCCCce
Q 012003 50 QQVIGINGQFPGPILNVTTNWNVVVNVKNDLD-EPLLLTWNG-------VQHRKNSWQDGVL----G--TNCPIPAGWNW 115 (473)
Q Consensus 50 ~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG-------~~~~~~~~~DGv~----~--tq~~I~PG~~~ 115 (473)
...+++||+. .|.|.++.| ++++||.|... ....++++| ..+. ..+.||.. . ....|.|||++
T Consensus 201 gd~~lvNG~~-~p~~~v~~~-~~RlRliNa~~~~~~~l~i~~~~~~~~~h~~~-vIa~DG~~~~~P~~~~~l~l~pgeR~ 277 (534)
T 3abg_A 201 GDVIHVNGQP-WPFKNVEPR-KYRFRFLDAAVSRSFGLYFADTDAIDTRLPFK-VIASDSGLLEHPADTSLLYISMAERY 277 (534)
T ss_dssp CSEEEETTEE-SCBCBCCSS-EEEEEEEECCSSCCEEEEECCSSSTTCCCCEE-EEEETTEEEEEEEEESCEEECTTCEE
T ss_pred CceeccCCcc-CceEEecCc-EEEEEEEecCCcceEEEEEecccCcCCCccEE-EEEeCCCcccCceEeceEEECCccEE
Confidence 4578999995 689999985 99999999965 456899976 3222 24579852 2 34669999999
Q ss_pred EEEEEECCCcc-ceeeccChhhhhcCC-------eeeEEEEEcCCCCCCCCCCCCCceEEEEeece-ecchHHHHHhhhC
Q 012003 116 TYQFQVKDQIG-SFFYFPSLDFQRAAG-------GYGGIIINNRDVIPLPFAVPDGDITIFISDWY-TKSHKKLRKDVEN 186 (473)
Q Consensus 116 ~Y~f~~~~~~G-t~wYH~H~~~q~~~G-------l~G~liV~~~~~~~~~~~~~~~e~~l~l~d~~-~~~~~~~~~~~~~ 186 (473)
+..+++.+.+| +||...........| ..+.+-+........+. ....+..+.... ..........+..
T Consensus 278 dvlv~~~~~~g~~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~~~---~~~~P~~L~~~~~p~~~~~~~~~~~~ 354 (534)
T 3abg_A 278 EVVFDFSDYAGKTIELRNLGGSIGGIGTDTDYDNTDKVMRFVVADDTTQPD---TSVVPANLRDVPFPSPTTNTPRQFRF 354 (534)
T ss_dssp EEEEECSSCTTSEEEEECCCCSSSSCCSCSSSTTTSEEEEEECCCCSSCSC---CCCCCCCCCCCSCCCCCCCCCEEEEC
T ss_pred EEEEEcCCCCCceEEEEeccccccccccccCcCCcceeEEEecCCCCcCCC---CCCCccccccCCCCCCccccceEEEE
Confidence 99999864478 587665321000000 11222222111100000 000000000000 0000000000000
Q ss_pred CCCCCCCCeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEee-cCc---ee--
Q 012003 187 GVDLGVPDGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVET-EGS---YT-- 260 (473)
Q Consensus 187 ~~~~~~~~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~-DG~---~~-- 260 (473)
. .....++|||+.+... .....+.++.|++++|.|.|.+....|.||||||.|+|++. +|. ..
T Consensus 355 ~---~~~~~w~iNG~~f~~~--------~~p~l~~v~~G~~~~w~i~N~~~~~~HP~HLHG~~F~Vl~~~~g~~~~~~~~ 423 (534)
T 3abg_A 355 G---RTGPTWTINGVAFADV--------QNRLLANVPVGTVERWELINAGNGWTHPIHIHLVDFKVISRTSGNNARTVMP 423 (534)
T ss_dssp S---CCCSTTCCCCBTTBCT--------TSCCCCEECTTCEEEEEEEECSSSCCCCEEESSCCEEEEEESSCCSSSCCCS
T ss_pred e---ccCceeEECCcccCCC--------CCcceeeccCCCEEEEEEEcCCCCCCcCEEECCeeEEEEEEcCCCCcCcCCc
Confidence 0 0112578999986210 01124579999999999999875558999999999999998 663 11
Q ss_pred -eeeeeeEEEEcCCceEEEEEE-eCCCCCcceEEEEeec
Q 012003 261 -VQQNYTNMDIHVGQSFSFLVT-TDQNASSDYYIVASPR 297 (473)
Q Consensus 261 -~p~~~d~v~l~pGeR~dv~v~-~~~~~g~~y~i~~~~~ 297 (473)
+....|++.+.||+++.|.++ ++ .+| .|.+.++..
T Consensus 424 ~~~~~rDTV~v~pg~~v~I~~~~ad-npG-~w~~HCHil 460 (534)
T 3abg_A 424 YESGLKDVVWLGRRETVVVEAHYAP-FPG-VYMFHCHNL 460 (534)
T ss_dssp GGGSCBSEECCCSSEEEEEEEECCS-CCE-EEEEEESCH
T ss_pred cccCCcCeEEcCCCCEEEEEEEECC-CCc-cEEEecChH
Confidence 114589999999999999998 55 578 888888875
No 67
>3t9w_A Small laccase, multi-copper oxidase; two-domain copper oxidase, Cu-binding, oxidoreducta; 1.50A {Amycolatopsis SP}
Probab=99.15 E-value=1.5e-10 Score=112.81 Aligned_cols=100 Identities=14% Similarity=0.102 Sum_probs=79.3
Q ss_pred EEEcCCCC--CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC--------CCcccCCCCceEEEEEEC
Q 012003 53 IGINGQFP--GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG--------TNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 53 ~~~Ng~~p--gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~--------tq~~I~PG~~~~Y~f~~~ 122 (473)
|.+||+.- -|.++++.||+|+++|.|.....+++|+||..+... ..++... ....|.||+++++.+.+-
T Consensus 179 ~~~Ng~~~~~~p~l~v~~Ge~Vr~~liN~~~~~HpfHlHGh~F~v~-~~g~~~~~~~~~~~~Dtv~v~PGe~~~~~via~ 257 (299)
T 3t9w_A 179 MMINNRAHHDAPTFEANLGERVEWIAIGHGSNFHTFHLHGHRWLDN-RTGMRTSEYDPSPLIDIKDLNPGVSFGFQVIAG 257 (299)
T ss_dssp TEETTCCTTCCCEEEEETTCEEEEEEEEESSCCCEEEETTCCEESS-SSSSCCSTTCCCCEESEEECCTTCEEEEEEETT
T ss_pred eeecCccccccccceecCCCEEEEEEEeccccceeeeEecceEEEE-ecccccCCcCCCCceeeEEeCCceeEEEEEEEe
Confidence 56788753 489999999999999999998999999999765321 1222211 123589999999998763
Q ss_pred --CCccceeeccChhhhhcCCeeeEEEEEcCCC
Q 012003 123 --DQIGSFFYFPSLDFQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 123 --~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 153 (473)
+.+|+|+||||...+...||.|.|.|++.+.
T Consensus 258 ~~dnPG~w~~HCHi~~H~~~GM~~~f~V~~~~~ 290 (299)
T 3t9w_A 258 EGVGPGMWMYHCHVQNHSDMGMAGMFLVRNADG 290 (299)
T ss_dssp TTTCSEEEEEEECSHHHHHTTCEEEEEEECTTS
T ss_pred eCCCCeeEEEEcCCHHHHhcCCeEEEEEECCCC
Confidence 3589999999999999999999999998764
No 68
>3tas_A Small laccase, multi-copper oxidase; two-domain laccase, oxidoreductase, secreted; HET: PG4; 2.30A {Streptomyces viridosporus} PDB: 3tbb_A 3tbc_A*
Probab=99.14 E-value=2.1e-10 Score=112.66 Aligned_cols=100 Identities=15% Similarity=0.148 Sum_probs=80.9
Q ss_pred EEEcCCC--CCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC--------CCcccCCCCceEEEEEEC
Q 012003 53 IGINGQF--PGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG--------TNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 53 ~~~Ng~~--pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~--------tq~~I~PG~~~~Y~f~~~ 122 (473)
|++||+. ..|.+.++.||+|+++|.|.....+++|+||..... ...||..+ ....|.||+++++.+.+.
T Consensus 163 ~t~Ng~~~~~~~~l~v~~Ge~vr~~liN~g~~~hpfHlHGh~F~v-~~~~~~~~~~~~~~~~Dtv~l~Pger~~v~v~a~ 241 (313)
T 3tas_A 163 MTINNRPAHTGPDFEATVGDRVEFVMITHGEYYHTFHLHGHRWAD-NRTGMLTGPDDPSQVIDNKICGPADSFGFQVIAG 241 (313)
T ss_dssp TEETTCCTTCCCCEEEETTCEEEEEEEEESSCCEEEEETTCCEES-STTSSCCSTTCCCCEESEEEECTTCEEEEEEETT
T ss_pred hhcccCCcccccccccccCCEEEEEEecccccceeeeecCCeeEE-EEECCccCCCCCCeeeeEEEeCCCcceEEEEEec
Confidence 5678763 268999999999999999998889999999986542 23444322 124589999999999873
Q ss_pred --CCccceeeccChhhhhcCCeeeEEEEEcCCC
Q 012003 123 --DQIGSFFYFPSLDFQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 123 --~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 153 (473)
+.+|+|+||||...+...||.|.|+|++++.
T Consensus 242 ~~~nPG~w~~HCHi~~H~~~GM~~~f~V~~~d~ 274 (313)
T 3tas_A 242 EGVGAGAWMYHCHVQSHSDMGMVGLFLVKKPDG 274 (313)
T ss_dssp TTTCSEEEEEEECSHHHHHTTCEEEEEEECTTC
T ss_pred cCCCCEeEEEEeCChHHHHCCCeEEEEEECCCC
Confidence 3589999999999999999999999998765
No 69
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=99.09 E-value=3.1e-10 Score=97.84 Aligned_cols=90 Identities=12% Similarity=0.084 Sum_probs=67.6
Q ss_pred CCCCceEEEecCCEEEEEEEECCCC-CceeeeCCCCC-----------------CCCCCCCCCC-CCCcccCCCCceEEE
Q 012003 58 QFPGPILNVTTNWNVVVNVKNDLDE-PLLLTWNGVQH-----------------RKNSWQDGVL-GTNCPIPAGWNWTYQ 118 (473)
Q Consensus 58 ~~pgP~i~v~~Gd~v~v~v~N~l~~-~~siH~HG~~~-----------------~~~~~~DGv~-~tq~~I~PG~~~~Y~ 118 (473)
+|--+.|++++||+|+++++|.-.. .++++.|+... ...+..+... .....|.||+++++.
T Consensus 31 ~F~p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~ 110 (139)
T 2aan_A 31 AFDKTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVT 110 (139)
T ss_dssp SBSCSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEE
T ss_pred EEcCCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEE
Confidence 4445799999999999999999777 88888887421 0001011100 112348999999999
Q ss_pred EEECCCccceeeccChhhhhcCCeeeEEEEE
Q 012003 119 FQVKDQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 119 f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
|+++ ++|+|+||||...|.. ||.|.|+|+
T Consensus 111 f~~~-~pG~y~f~C~~~~H~~-GM~G~i~V~ 139 (139)
T 2aan_A 111 FTAP-AAGTYLYICTVPGHYP-LMQGKLVVN 139 (139)
T ss_dssp EECC-SSEEEEEECCSTTTTT-TSEEEEEEC
T ss_pred EECC-CCeEEEEEcCCCChHH-cCEEEEEEC
Confidence 9984 7999999999888888 999999984
No 70
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=99.06 E-value=1.3e-09 Score=94.11 Aligned_cols=91 Identities=16% Similarity=0.119 Sum_probs=67.4
Q ss_pred CCCceEEEecCCEEEEEEEE--CCCCCceeeeCCCC------------C----CCCCCCCCCC--CCCcccCCCCceEEE
Q 012003 59 FPGPILNVTTNWNVVVNVKN--DLDEPLLLTWNGVQ------------H----RKNSWQDGVL--GTNCPIPAGWNWTYQ 118 (473)
Q Consensus 59 ~pgP~i~v~~Gd~v~v~v~N--~l~~~~siH~HG~~------------~----~~~~~~DGv~--~tq~~I~PG~~~~Y~ 118 (473)
|-.+.|++++||+|+++++| .....++++.+... . ...+..|... .....|.||++.++.
T Consensus 30 F~P~~i~v~~G~tV~~~~~N~~~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~ 109 (140)
T 1qhq_A 30 FAQTSLSLPANTVVRLDFVNQNNLGVQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVT 109 (140)
T ss_dssp BSCSEEEEETTCEEEEEEEECCSSCCCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEE
T ss_pred EeCCeEEECCCCEEEEEEECCCCCCCceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEE
Confidence 33479999999999999999 66778888887321 0 0000011111 112458999999999
Q ss_pred EEECCCccceeeccChhhhhcCCeeeEEEEEc
Q 012003 119 FQVKDQIGSFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 119 f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
|++ +++|+|||||+...|...||.|.|+|.|
T Consensus 110 ~~~-~~~G~y~f~C~~~~H~~~GM~g~i~V~p 140 (140)
T 1qhq_A 110 FRT-PAPGTYLYICTFPGHYLAGMKGTLTVTP 140 (140)
T ss_dssp EEC-CSSEEEEEECCSTTTTTTTCEEEEEEEC
T ss_pred EEe-CCCeeEEEEeCCcCHhhcCCEEEEEEcC
Confidence 998 5799999999998888899999999974
No 71
>3sqr_A Laccase; multicopper oxidase, glycosylation, oxidoreductase; HET: NAG BMA MAN; 1.67A {Botrytis aclada}
Probab=99.03 E-value=2.6e-08 Score=105.12 Aligned_cols=239 Identities=10% Similarity=0.024 Sum_probs=143.2
Q ss_pred EEEEEcCCCC----------------CceEEEecCCEEEEEEEECCC-CCceeeeCCCCCCCCCCCCCCCC-----CCcc
Q 012003 51 QVIGINGQFP----------------GPILNVTTNWNVVVNVKNDLD-EPLLLTWNGVQHRKNSWQDGVLG-----TNCP 108 (473)
Q Consensus 51 ~~~~~Ng~~p----------------gP~i~v~~Gd~v~v~v~N~l~-~~~siH~HG~~~~~~~~~DGv~~-----tq~~ 108 (473)
..+++||+.. .++|.+++|+++++||.|... ....+|++|..+.. .+.||.+. ....
T Consensus 226 d~~liNG~~~~~c~~~~~~~~~~~~~~~~~~v~~G~~yRlRlINa~~~~~~~~~i~gh~~~V-Ia~DG~~v~P~~~~~l~ 304 (580)
T 3sqr_A 226 ENTLMNGTNTFDCSASTDPNCVGGGKKFELTFVEGTKYRLRLINVGIDSHFEFAIDNHTLTV-IANDLVPIVPYTTDTLL 304 (580)
T ss_dssp SEEEETTBCCCCCTTCCCTTBCCCCCCCEEECCTTCEEEEEEEECCSSCCEEEEETTCCEEE-EEETTEEEEEEEESSEE
T ss_pred ceEEECCcccCCCccccccccccCCCceeEEEcCCCEEEEEEEeccCCceeeEEeCCceEEE-EEeCCccCCceEeeEEE
Confidence 4678999742 379999999999999999965 45689999987543 46799863 2356
Q ss_pred cCCCCceEEEEEECCCccceeeccChhh-----hhcCCeeeEEEEEcCCCCCCCCC--CCCCceEEEEee--ceecch--
Q 012003 109 IPAGWNWTYQFQVKDQIGSFFYFPSLDF-----QRAAGGYGGIIINNRDVIPLPFA--VPDGDITIFISD--WYTKSH-- 177 (473)
Q Consensus 109 I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~-----q~~~Gl~G~liV~~~~~~~~~~~--~~~~e~~l~l~d--~~~~~~-- 177 (473)
|.|||+++..+++.+.+|.||....... +...... +|+.........|.. ....+. .+.+ ......
T Consensus 305 i~pGqRydVlv~a~~~~g~Y~i~a~~~~~~~~~~~~~~~~-aiL~Y~~~~~~~P~~~~~~~~~~--~~~~~~~~L~P~~~ 381 (580)
T 3sqr_A 305 IGIGQRYDVIVEANAAADNYWIRGNWGTTCSTNNEAANAT-GILRYDSSSIANPTSVGTTPRGT--CEDEPVASLVPHLA 381 (580)
T ss_dssp ECTTCEEEEEEECCSCSSEEEEECCCCTTTSCBTTGGGCE-EEEESSTTCCCCCCCCCCCCCCC--SCCSCGGGCCBSSC
T ss_pred EccceEEEEEEEeCCCCCeEEEEEecccccCccCCCCceE-EEEEECCCCCCCCCCCCCCccch--hhcccccccccCCC
Confidence 8999999999999655799999977532 1111112 233332211111110 000000 0000 000000
Q ss_pred HHHH------HhhhCCCCCCCCCeEEEcCCCCCCCCCCc------CCCC---CCceEEEE----eCCcEEEEEEeEeCC-
Q 012003 178 KKLR------KDVENGVDLGVPDGILINGLGPYRYDAAI------VPDG---IPYQLINV----EPGKTYRLRVHNVGI- 237 (473)
Q Consensus 178 ~~~~------~~~~~~~~~~~~~~~liNG~~~~~~~~~~------~~~~---~~~~~~~v----~~G~~~rlRliN~~~- 237 (473)
..+. ..+..+ ....-.+.|||..+....... .+.. .....+.+ +.|+++.|-|-|.+.
T Consensus 382 ~~~~~~~~~~~~l~~~--~~~~~~w~iN~~s~~~~~~~P~L~~~~~g~~~~~~~~~~~~~~~~~~~~~~VeiVi~n~~~~ 459 (580)
T 3sqr_A 382 LDVGGYSLVDEQVSSA--FTNYFTWTINSSSLLLDWSSPTTLKIFNNETIFPTEYNVVALEQTNANEEWVVYVIEDLTGF 459 (580)
T ss_dssp CBCCSEEEEEEEEEEE--ESSSEEEEETTBCCCCCTTSCHHHHHHTTCCCCCGGGCEEEECC----CCEEEEEEEECSSS
T ss_pred CCCCCccceEEEEEec--cCCceeEEECCEecccCCCCCchhhhhcCCccCCCCcceeecccccCCCcEEEEEEeCCCcc
Confidence 0000 000000 001124778998763211110 0000 01123444 359999999999872
Q ss_pred CceeEEEEeCceeEEEeecC-c-----------eeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 238 STSLNFRIQNHNLLLVETEG-S-----------YTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 238 ~~~~~~~i~gh~~~via~DG-~-----------~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
...|.||+|||.|+||+.+. . +..|...|++.+.||+...+.+++++ +| .+.++++..
T Consensus 460 ~~~HP~HLHGh~F~vv~~g~G~f~~~~~~~~~nl~nP~~rDTv~v~~~g~~~irf~adN-PG-~W~~HCHi~ 529 (580)
T 3sqr_A 460 GIWHPIHLHGHDFFIVAQETDVFNSDESPAKFNLVNPPRRDVAALPGNGYLAIAFKLDN-PG-SWLLHCHIA 529 (580)
T ss_dssp CCCEEEEESSCCEEEEEEESSCCCTTTSGGGCCCBSCCEESEEEECTTSEEEEEEESCS-CE-EEEEEECSH
T ss_pred ccceeeEecCceEEEEecCCCccCccccccccccCCCceeeEEEeCCCceEEEEEEcCC-Ce-eeEEEECcH
Confidence 24899999999999998843 2 23477899999999999999999995 67 677888764
No 72
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=98.94 E-value=1.8e-09 Score=87.43 Aligned_cols=79 Identities=13% Similarity=0.195 Sum_probs=63.8
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
|..|-...|++++||+|++.++|.-...+++...+... ...+.||++.++.|+. +++|+|.|+|.
T Consensus 22 ~~~F~P~~i~v~~G~tV~~~~~n~d~~~H~~~~~~~~~------------~~~~~pg~~~~~~~t~-~~~G~Y~y~C~-- 86 (100)
T 4hci_A 22 DDYFNPNVITIPINESTTLLLKNKGKSEHTFTIKKLGI------------DVVVESGKEKNITVKP-KSAGTYELICR-- 86 (100)
T ss_dssp TTEEESSEEEECTTSCEEEEEEECSSSCEEEEEGGGTE------------EEEECTTCEEEEEECC-CSCEEEEEECT--
T ss_pred CCEEeCCEEEECCCCEEEEEEEcCCCceEEEEEecCCc------------ceeecCCcceeEEEec-ccCceEEEECc--
Confidence 44554469999999999999999977777777665522 1357899999999997 68999999997
Q ss_pred hhhcCCeeeEEEEE
Q 012003 136 FQRAAGGYGGIIIN 149 (473)
Q Consensus 136 ~q~~~Gl~G~liV~ 149 (473)
.|...||.|.|||+
T Consensus 87 ~H~~~gM~G~i~Ve 100 (100)
T 4hci_A 87 YHLLKGMEGKVIVK 100 (100)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred cccCCCCEEEEEEC
Confidence 46667999999995
No 73
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=98.91 E-value=9.8e-10 Score=88.57 Aligned_cols=79 Identities=16% Similarity=0.203 Sum_probs=58.9
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCC--CCCCcccCCCCceEEEEEECCCccceeeccChhhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV--LGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv--~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~ 139 (473)
+.|++++||+|+ ++|....++++|+|+.... ...|.. ......+.||++++++|. ++|+|||||+ .|..
T Consensus 18 ~~i~v~~G~~V~--~~n~~~~~H~~~~~~~~~p--~~~~~~~~~~~~~~~~pG~~~~~tf~---~~G~y~y~C~--~H~~ 88 (98)
T 2plt_A 18 KTLTIKSGETVN--FVNNAGFPHNIVFDEDAIP--SGVNADAISRDDYLNAPGETYSVKLT---AAGEYGYYCE--PHQG 88 (98)
T ss_dssp SEEEECTTCEEE--EEECSSCCEEEEECGGGSC--TTCCHHHHCEEEEECSTTCEEEEECC---SCEEEEEECG--GGGG
T ss_pred CEEEECCCCEEE--EEECCCCceEEEEeCCCCC--CccccccccccceecCCCCEEEEEeC---CCeEEEEEcC--Cccc
Confidence 789999999875 5898778999999986321 111110 001245899999999884 6999999999 5677
Q ss_pred CCeeeEEEEE
Q 012003 140 AGGYGGIIIN 149 (473)
Q Consensus 140 ~Gl~G~liV~ 149 (473)
+||.|.|+|+
T Consensus 89 ~gM~G~i~V~ 98 (98)
T 2plt_A 89 AGMVGKIIVQ 98 (98)
T ss_dssp GTCEEEEEEC
T ss_pred cCCeEEEEEC
Confidence 7999999984
No 74
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=98.87 E-value=9.6e-10 Score=88.65 Aligned_cols=81 Identities=16% Similarity=0.234 Sum_probs=58.3
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (473)
-+.|++++||+|++ +|.....++++.++....+. ..++.......+.||+++++.| +++|+|+|||+ .|..+
T Consensus 18 P~~i~v~~G~~V~~--~n~~~~~H~~~~~~~~~pg~-~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~~~C~--~H~~~ 89 (98)
T 1pcs_A 18 PSTVTIKAGEEVKW--VNNKLSPHNIVFDADGVPAD-TAAKLSHKGLLFAAGESFTSTF---TEPGTYTYYCE--PHRGA 89 (98)
T ss_dssp SSEEEECTTCEEEE--EECSSCCEEEEECCSSSCHH-HHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECG--GGTTT
T ss_pred CCEEEECCCCEEEE--EECCCCCcEEEEeCCCCCcc-ccccccccccccCCCCEEEEEc---CCCeEEEEEcC--Ccccc
Confidence 36899999998765 58766789999987532100 0000001124589999999988 36999999999 57778
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
||.|.|+|+
T Consensus 90 gM~G~i~V~ 98 (98)
T 1pcs_A 90 GMVGKVVVE 98 (98)
T ss_dssp TCEEEEEEC
T ss_pred CCeEEEEEC
Confidence 999999984
No 75
>3gyr_A PHS, phenoxazinone synthase; metalloprotein, laccase, multicopper oxidase, hexamer, oxidoreductase, antibiotic biosynthesis; 2.30A {Streptomyces antibioticus}
Probab=98.86 E-value=6e-08 Score=103.94 Aligned_cols=91 Identities=5% Similarity=-0.070 Sum_probs=72.1
Q ss_pred CeEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCcee-------------
Q 012003 194 DGILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYT------------- 260 (473)
Q Consensus 194 ~~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~------------- 260 (473)
..+.+||+.+. ....+.++.|++++|.|+|.+.. .|.||||||.|+||+.+|...
T Consensus 459 ~~~~~n~~~~~-----------~~~~~~~~~g~~~~w~i~N~~~~-~HP~HLHG~~F~Vl~~~g~~~~~~~~~~~~~~~~ 526 (612)
T 3gyr_A 459 KTYRRTARTFN-----------DGLGFTIGEGTHEQWTFLNLSPI-LHPMHIHLADFQVLGRDAYDASGFDLALGGTRTP 526 (612)
T ss_dssp EEEEEEECSTT-----------SCCCEEEETTCEEEEEEEECSSS-CEEEEESSCEEEEEEEEEEECTTEETTTTEESSC
T ss_pred ccccccCccCC-----------CCcceEeCCCCEEEEEEEcCCCC-CcCEeECCCcEEEEeecCCcCccccccccccccc
Confidence 34677877652 23668899999999999999865 799999999999998876421
Q ss_pred --------------eeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 261 --------------VQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 261 --------------~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
++...|++.+.+|+.+.|.+++.+.+| .|.+.++..
T Consensus 527 ~~~~~~~~~~~~~~~~~~kDTv~v~~~~~v~i~~rfadnpG-~w~~HCHil 576 (612)
T 3gyr_A 527 VRLDPDTPVPLAPNELGHKDVFQVPGPQGLRVMGKFDGAYG-RFMYHCHLL 576 (612)
T ss_dssp EEEEEEEECCCCTTCSSCBSEEEECSSEEEEEEEECCSCCE-EEEEEESSH
T ss_pred cccccccccCcccccCCCCcEEEECCCCEEEEEEEeCCCCc-ceEEcCCCh
Confidence 112479999999999999999655678 777888774
No 76
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=98.86 E-value=4.7e-09 Score=83.21 Aligned_cols=74 Identities=18% Similarity=0.285 Sum_probs=56.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAA 140 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~ 140 (473)
.+.|++++||+|++ +|.....++++.++... .. .....+.||+++++.| +++|+|||||+ .|...
T Consensus 18 P~~i~v~~Gd~V~~--~n~~~~~H~v~~~~~~~----~~----~~~~~~~~g~~~~~~f---~~~G~y~~~C~--~H~~~ 82 (91)
T 1bxv_A 18 PSTIEIQAGDTVQW--VNNKLAPHNVVVEGQPE----LS----HKDLAFSPGETFEATF---SEPGTYTYYCE--PHRGA 82 (91)
T ss_dssp SSEEEECTTCEEEE--EECSSCCEEEEETTCGG----GC----EEEEECSTTCEEEEEC---CSCEEEEEECT--TTGGG
T ss_pred CCEEEECCCCEEEE--EECCCCCcEEEEeCCCc----cC----cccceeCCCCEEEEEe---CCCEEEEEEeC--CCccC
Confidence 47899999999765 58766788999887310 00 1124689999998887 47999999999 56667
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
||.|.|+|+
T Consensus 83 gM~g~i~V~ 91 (91)
T 1bxv_A 83 GMVGKIVVQ 91 (91)
T ss_dssp TCEEEEEEC
T ss_pred CCEEEEEEC
Confidence 999999984
No 77
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=98.84 E-value=7.7e-09 Score=88.13 Aligned_cols=78 Identities=15% Similarity=0.164 Sum_probs=56.8
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccCCCCceEEEEEECCCccceeeccCh
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSL 134 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~ 134 (473)
+-.|-.+.|++++||+|++ +|....++++++.... +|... ....+.||++++|.| +++|+|+|+|-.
T Consensus 54 ~~~F~P~~i~V~~GdtV~~--~N~d~~~H~v~~~~~~-------~g~~~~~s~~l~pG~t~~~tF---~~~G~y~y~C~~ 121 (132)
T 3c75_A 54 KMKYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTP 121 (132)
T ss_dssp TTEESSSEEEECTTCEEEE--EECSSSCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSS
T ss_pred eeEEeCCEEEECCCCEEEE--EECCCCceEEEEeCCC-------CCcccccccccCCCCEEEEEc---CCCEEEEEEeCC
Confidence 4445457999999999865 5887777777775431 22222 234589999999988 369999999975
Q ss_pred hhhhcCCeeeEEEEE
Q 012003 135 DFQRAAGGYGGIIIN 149 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~ 149 (473)
+ . ||.|.|+|+
T Consensus 122 H--~--gM~G~I~V~ 132 (132)
T 3c75_A 122 H--P--FMRGKVIVE 132 (132)
T ss_dssp C--T--TCEEEEEEC
T ss_pred C--c--CCEEEEEEC
Confidence 3 2 999999984
No 78
>1kbv_A ANIA, major outer membrane protein PAN 1; ANIA[NO2-], oxidoreductase; 1.95A {Neisseria gonorrhoeae} SCOP: b.6.1.3 b.6.1.3 PDB: 1kbw_A
Probab=98.80 E-value=8.5e-09 Score=101.82 Aligned_cols=102 Identities=18% Similarity=0.188 Sum_probs=82.2
Q ss_pred EEEEEEcCCCCC----ceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEE
Q 012003 50 QQVIGINGQFPG----PILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQF 119 (473)
Q Consensus 50 ~~~~~~Ng~~pg----P~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f 119 (473)
...+++||+... +.|.+++|+++++|+.|.. ...+.+|+||..... -+.||.+. ....|.||++++..|
T Consensus 198 ~~~~~iNG~~~~~~~~~~l~v~~G~~vRlRliN~~~~~~~~~~l~Gh~f~v-i~~DG~~~~p~~~d~l~l~pGer~dv~v 276 (327)
T 1kbv_A 198 PEYVVFNGHVGALTGDNALKAKAGETVRMYVGNGGPNLVSSFHVIGEIFDK-VYVEGGKLINENVQSTIVPAGGSAIVEF 276 (327)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTEEEEEEEEEEESSCCEEEEEETCCBSE-EEGGGSSCEECSBSEEEECTTEEEEEEE
T ss_pred CceEEEcCcccCCCCceeEEeCCCCEEEEEEECCCCCCceeEEEeCCEEEE-EEcCCCcCCCCceeEEEECCCCEEEEEE
Confidence 357899998643 6899999999999999985 467899999986542 34688642 335689999999999
Q ss_pred EECCCccceeeccChhhh-hcCCeeeEEEEEcCCC
Q 012003 120 QVKDQIGSFFYFPSLDFQ-RAAGGYGGIIINNRDV 153 (473)
Q Consensus 120 ~~~~~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~ 153 (473)
++. ++|+||+|||...+ ...|+.+.|.++....
T Consensus 277 ~~~-~pG~y~l~~h~~~~~~~~g~~a~l~~~g~~~ 310 (327)
T 1kbv_A 277 KVD-IPGNYTLVDHSIFRAFNKGALGQLKVEGAEN 310 (327)
T ss_dssp EEC-SCEEEEEEESSTHHHHHSSCEEEEEEESCCC
T ss_pred EeC-CCeEEEEEeccccccccCCcEEEEEECCCCC
Confidence 995 79999999998766 3678999999987543
No 79
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=98.79 E-value=1.1e-08 Score=83.07 Aligned_cols=82 Identities=6% Similarity=0.009 Sum_probs=56.5
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCC-----CCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRK-----NSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~-----~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
-+.|++++||+|+ ++|.-..+++++++.-.-.. ...+.+.......+.||+++++.| +++|+|+|||+
T Consensus 16 P~~i~v~~G~tV~--~~n~~~~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf---~~~G~y~y~C~-- 88 (102)
T 1kdj_A 16 PDSITVSAGEAVE--FTLVGETGHNIVFDIPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV---STPGTYTFYCT-- 88 (102)
T ss_dssp SSEEEECTTCCEE--EEECSSSCBCCEECCCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC---CSCEEEEEECS--
T ss_pred CCEEEECCCCEEE--EEECCCCCeEEEEeCcccccccccchhhcccccccceecCCCCEEEEEe---CCCeEEEEEeC--
Confidence 3789999999976 55886677888877310000 000001111224589999999988 37999999999
Q ss_pred hhhcCCeeeEEEEE
Q 012003 136 FQRAAGGYGGIIIN 149 (473)
Q Consensus 136 ~q~~~Gl~G~liV~ 149 (473)
.|..+||.|.|+|+
T Consensus 89 ~H~~~gM~G~i~V~ 102 (102)
T 1kdj_A 89 PHKSANMKGTLTVK 102 (102)
T ss_dssp TTGGGTCEEEEEEC
T ss_pred CCcccCCeEEEEEC
Confidence 67778999999984
No 80
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=98.78 E-value=1.4e-08 Score=81.50 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=56.7
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC---CCCcccCCCCceEEEEEECCCccceeeccChhhhh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL---GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQR 138 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~---~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~ 138 (473)
+.|++++||+| ++.|.-...++++.++... .+|.. .....+.||+++++.| +++|+|+|||+ .|.
T Consensus 19 ~~i~v~~G~~V--~~~n~~~~~H~~~~~~~~~-----~~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~--~H~ 86 (97)
T 1b3i_A 19 KALSISAGDTV--EFVMNKVGPHNVIFDKVPA-----GESAPALSNTKLAIAPGSFYSVTL---GTPGTYSFYCT--PHR 86 (97)
T ss_dssp SEEEECTTCEE--EEEECSSCCCCBEEEECCT-----TSCHHHHCBCCCCCSCSCCEEEEC---CSCSEEEEECS--STT
T ss_pred CEEEECCCCEE--EEEECCCCCeEEEEeCCCC-----ccccccccccceecCCCCEEEEEe---CCCeEEEEEcc--Chh
Confidence 68999999986 5568766778888876532 11110 1124589999999988 37999999999 667
Q ss_pred cCCeeeEEEEE
Q 012003 139 AAGGYGGIIIN 149 (473)
Q Consensus 139 ~~Gl~G~liV~ 149 (473)
.+||.|.|+|+
T Consensus 87 ~~gM~G~i~V~ 97 (97)
T 1b3i_A 87 GAGMVGTITVE 97 (97)
T ss_dssp TTTCEEEEEEC
T ss_pred hcCCEEEEEEC
Confidence 78999999984
No 81
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=98.76 E-value=1.5e-08 Score=84.89 Aligned_cols=74 Identities=8% Similarity=-0.025 Sum_probs=53.5
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
..|+|++||+|++.++|. ++++..+.- ..-+|.. ...+.||++++|.| +++|+|||+|. .|..+|
T Consensus 21 ~~i~V~~GdtV~f~~~~~---~H~v~~~~~-----~~P~g~~--~f~~~pg~t~s~TF---~~pG~y~y~C~--~H~~~G 85 (123)
T 3erx_A 21 AFVRAEPGDVINFVPTDK---SHNVEAIKE-----ILPEGVE--SFKSKINESYTLTV---TEPGLYGVKCT--PHFGMG 85 (123)
T ss_dssp SEEEECTTEEEEEEESST---TCCCEECTT-----SSCTTCC--CCBCCTTCCEEEEE---CSCEEEEEECG--GGTTTT
T ss_pred CEEEECCCCEEEEEECCC---CceEEEcCC-----cCCCCcc--ceecCCCCEEEEEe---CCCeEEEEEeC--CCCcCC
Confidence 699999999988877762 344443321 1123321 23467999999888 36999999998 567789
Q ss_pred eeeEEEEEc
Q 012003 142 GYGGIIINN 150 (473)
Q Consensus 142 l~G~liV~~ 150 (473)
|.|.|+|.+
T Consensus 86 M~G~I~V~~ 94 (123)
T 3erx_A 86 MVGLVQVGD 94 (123)
T ss_dssp CEEEEEESS
T ss_pred cEEEEEECC
Confidence 999999986
No 82
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=98.73 E-value=1.5e-08 Score=85.42 Aligned_cols=76 Identities=12% Similarity=0.098 Sum_probs=53.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
+.|++++||+|++.++|. ++++..+.- ..-+|. ....+.||++++|.| +++|+|||||. .|..+|
T Consensus 23 ~~i~V~~GDtVtf~n~~~---~H~v~~~~~-----~~P~g~--~~f~s~pGet~s~TF---~~pG~y~y~C~--~H~~~G 87 (127)
T 3tu6_A 23 AVIRAQPGDTVTFVAKDK---GHNSALMKG-----GAPEGA--ETWKGKINEEITVTL---SKPGVYMYQCA--PHVGMG 87 (127)
T ss_dssp SEEEECTTCEEEEECSSS---SCCCEECTT-----CSCTTC--CCCBCCTTCCCEEEC---CSCEEEEEECT--TTGGGT
T ss_pred CEEEECCCCEEEEEECCC---CceEEEccC-----cCCCCc--cceecCCCCEEEEEe---CCCeEEEEEeC--CCCcCC
Confidence 799999999977766653 444443321 011222 123457999999988 36999999998 466789
Q ss_pred eeeEEEEEcCC
Q 012003 142 GYGGIIINNRD 152 (473)
Q Consensus 142 l~G~liV~~~~ 152 (473)
|.|.|+|.++.
T Consensus 88 M~G~I~V~~~~ 98 (127)
T 3tu6_A 88 MIGAIVVGEPA 98 (127)
T ss_dssp CEEEEEESSCT
T ss_pred cEEEEEECcCC
Confidence 99999998754
No 83
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=98.72 E-value=4.1e-08 Score=79.09 Aligned_cols=76 Identities=16% Similarity=0.249 Sum_probs=57.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC-------CCCcccCCCCceEEEEEECCCccceeeccCh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL-------GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL 134 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~-------~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~ 134 (473)
+.|++++||+| +++|....+++++.++... .+|.. .....+.||+++++.|. ++|+|+|||+
T Consensus 17 ~~i~v~~G~tV--~~~n~~~~~H~~~~~~~~~-----p~g~~~~~~~~~~~~~~~~~G~~~~~~f~---~~G~y~~~C~- 85 (99)
T 1byp_A 17 SDLSIASGEKI--TFKNNAGFPHNDLFDKKEV-----PAGVDVTKISMPEEDLLNAPGEEYSVTLT---EKGTYKFYCA- 85 (99)
T ss_dssp SEEEECTTEEE--EEEECSSCCBCCEECTTSS-----CTTCCHHHHSCCTTCCBCSTTCEEEEEEC---SCEEEEEECG-
T ss_pred CEEEECCCCEE--EEEECCCCcceEEEeCCCC-----ccccccccccccccceeeCCCCEEEEEeC---CCcEEEEEcC-
Confidence 68999999985 5589877788999887532 12221 11235789999988874 6999999999
Q ss_pred hhhhcCCeeeEEEEE
Q 012003 135 DFQRAAGGYGGIIIN 149 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~ 149 (473)
.|..+||.|.|+|+
T Consensus 86 -~H~~~gM~G~i~V~ 99 (99)
T 1byp_A 86 -PHAGAGMVGKVTVN 99 (99)
T ss_dssp -GGTTTTCEEEEEEC
T ss_pred -CccccCCEEEEEEC
Confidence 67778999999984
No 84
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=98.71 E-value=4.3e-08 Score=78.99 Aligned_cols=76 Identities=17% Similarity=0.275 Sum_probs=57.0
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCC-------CCCcccCCCCceEEEEEECCCccceeeccCh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVL-------GTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL 134 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~-------~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~ 134 (473)
+.|++++||+|+ ++|....+++++.++... .+|.. .....+.||+++++.|. ++|+|+|||+
T Consensus 17 ~~i~v~~G~tV~--~~n~~~~~H~v~~~~~~~-----p~~~~~~~~~~~~~~~~~~~G~~~~~tf~---~~G~y~~~C~- 85 (99)
T 1plc_A 17 SEFSISPGEKIV--FKNNAGFPHNIVFDEDSI-----PSGVDASKISMSEEDLLNAKGETFEVALS---NKGEYSFYCS- 85 (99)
T ss_dssp SEEEECTTCEEE--EEECSSCCBCCEECTTSS-----CTTCCHHHHCCCTTCCBCSTTCEEEEECC---SCEEEEEECG-
T ss_pred CEEEECCCCEEE--EEECCCCceEEEEeCCCC-----cccccccccccccCccccCCCCEEEEEEC---CCceEEEEcC-
Confidence 699999999765 588877788888876422 12211 01235789999998873 6999999999
Q ss_pred hhhhcCCeeeEEEEE
Q 012003 135 DFQRAAGGYGGIIIN 149 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~ 149 (473)
.|..+||.|.|+|+
T Consensus 86 -~H~~~gM~G~i~V~ 99 (99)
T 1plc_A 86 -PHQGAGMVGKVTVN 99 (99)
T ss_dssp -GGTTTTCEEEEEEC
T ss_pred -CCcccCCEEEEEEC
Confidence 57778999999984
No 85
>2r7e_B Coagulation factor VIII; ceruloplasmin fold, cupper protein fold, C2 domain fold, ACU blood coagulation, disease mutation, glycoprotein; HET: NAG BMA MAN; 3.70A {Homo sapiens} PDB: 3cdz_B*
Probab=98.69 E-value=3.6e-09 Score=115.39 Aligned_cols=98 Identities=11% Similarity=-0.010 Sum_probs=82.1
Q ss_pred EEEEEcCCCCC--ceEEEecCCEEEEEEEECCC--CCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCcc
Q 012003 51 QVIGINGQFPG--PILNVTTNWNVVVNVKNDLD--EPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIG 126 (473)
Q Consensus 51 ~~~~~Ng~~pg--P~i~v~~Gd~v~v~v~N~l~--~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~G 126 (473)
.+++|||+..+ |.|+++.|++++++|.|... ..+.+|+||..+.. ...||.......|.||++++..|.+ +++|
T Consensus 355 ~~~~ING~~~~~~~~l~v~~Ge~vr~rliN~g~~~~~H~fHlhGh~f~V-v~~dg~~~Dtv~l~Pg~~~~v~~~a-d~pG 432 (770)
T 2r7e_B 355 RFHAINGYIMDTLPGLVMAQDQRIRWYLLSMGSNENIHSIHFSGHVFTV-RKKEEYKMALYNLYPGVFETVEMLP-SKAG 432 (770)
T ss_dssp CEECTTSCTTTTCCCCCCCSSSCEEEECCCCCSSSCCCEEEBSSCCEEC-CSSSCCEESEEECCTTCCCEEEECC-SSCB
T ss_pred CccccCCccCCCCCCeEEeCCCEEEEEEEeCCCCcceEEEEEcCCEEEE-EecCCceeeEEEECCCeEEEEEEEe-CCCC
Confidence 57899999753 78999999999999999854 47999999997654 3456542234678999999999998 5899
Q ss_pred ceeeccChhhhhcCCeeeEEEEEc
Q 012003 127 SFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 127 t~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
.|++|||...+...||.+.|.|..
T Consensus 433 ~w~~hcH~~~H~~~GM~~~~~V~s 456 (770)
T 2r7e_B 433 IWRVECLIGEHLHAGMSTLFLVYS 456 (770)
T ss_dssp CCCBCCCSHHHHTTBCCCCCCBCC
T ss_pred ceEEEecccccccccccccccccc
Confidence 999999999999999999999854
No 86
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=98.67 E-value=7.7e-08 Score=80.51 Aligned_cols=75 Identities=9% Similarity=-0.006 Sum_probs=53.8
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
..|+|++||+|++. |.- .++++..+.-. .-+|. ....+.||++++|.| +.+|+|||||- .|..+|
T Consensus 22 ~~i~V~~GDTV~f~--n~~-~~Hnv~~~~~~-----~p~g~--~~~~~~pg~t~s~TF---~~~G~y~Y~C~--~H~~~G 86 (124)
T 3ef4_A 22 GFVKVEAGDTVKFV--PTD-KSHNAESVREV-----WPEGV--APVKGGFSKEVVFNA---EKEGLYVLKCA--PHYGMG 86 (124)
T ss_dssp SEEEECTTCEEEEE--CSS-SSCCCEECTTT-----SCTTS--CCCBCCTTCCEEEEC---CSSEEEEEECT--TTGGGT
T ss_pred CEEEECCCCEEEEE--ECC-CCccEEEeCCc-----CCCCc--cccccCCCCEEEEEe---CCCeEEEEEcC--CCCcCC
Confidence 79999999997655 543 46666655221 11222 123467999999988 36899999996 567789
Q ss_pred eeeEEEEEcC
Q 012003 142 GYGGIIINNR 151 (473)
Q Consensus 142 l~G~liV~~~ 151 (473)
|.|.|+|.++
T Consensus 87 M~G~I~V~~p 96 (124)
T 3ef4_A 87 MVVLVQVGKP 96 (124)
T ss_dssp CEEEEEESSC
T ss_pred CEEEEEECCC
Confidence 9999999874
No 87
>1mzy_A Copper-containing nitrite reductase; mutant M182T, gating mechanism, electron oxidoreductase; 1.46A {Rhodobacter sphaeroides} SCOP: b.6.1.3 b.6.1.3 PDB: 1mzz_A 1n70_A 1zv2_A 2a3t_A 2dws_A 2dwt_A 2dy2_A
Probab=98.66 E-value=5.2e-08 Score=96.45 Aligned_cols=98 Identities=16% Similarity=0.131 Sum_probs=73.6
Q ss_pred EEEEEcCCCC----CceEEEecCCEEEEEEEECCCC--CceeeeCCCCCCCCCCCCCCCC-------CCcccCCCCceEE
Q 012003 51 QVIGINGQFP----GPILNVTTNWNVVVNVKNDLDE--PLLLTWNGVQHRKNSWQDGVLG-------TNCPIPAGWNWTY 117 (473)
Q Consensus 51 ~~~~~Ng~~p----gP~i~v~~Gd~v~v~v~N~l~~--~~siH~HG~~~~~~~~~DGv~~-------tq~~I~PG~~~~Y 117 (473)
..|+|||+.- .|.|++++|++++++..|.... .+.+|.|++.+. .||.+. ....|.||++++.
T Consensus 210 ~~~~ING~~~~~~~~~~l~v~~Ger~Rl~n~~~~~~~~~h~i~~h~~~Vi----~dG~~~~~p~~~~dtv~l~pGer~~v 285 (333)
T 1mzy_A 210 SHIVFNGAVGALTGEGALKAKVGDNVLFVHSQPNRDSRPHLIGGHGDLVW----ETGKFHNAPERDLETWFIRGGTAGAA 285 (333)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEEE----TTCCTTSCCEEEESBCCBCTTEEEEE
T ss_pred cEEEECCcccccCCCcceEecCCCEEEEEECCCCCccccEEECCCCeEEE----eCCcccCCCccCcceEEECCCceEEE
Confidence 5799999862 3679999999998887775322 234555665442 377642 1235899999999
Q ss_pred EEEECCCccceeeccChhhhh-cCCeeeEEEEEcCCC
Q 012003 118 QFQVKDQIGSFFYFPSLDFQR-AAGGYGGIIINNRDV 153 (473)
Q Consensus 118 ~f~~~~~~Gt~wYH~H~~~q~-~~Gl~G~liV~~~~~ 153 (473)
.+++ +++|.||||||...+. ..||.|.|-|+.+..
T Consensus 286 ~v~a-~~pG~y~~~ch~~~h~~~~Gm~~~~~v~~~~~ 321 (333)
T 1mzy_A 286 LYKF-LQPGVYAYVNHNLIEAVHKGATAHVLVEGEWD 321 (333)
T ss_dssp EEEC-CSCEEEEEEESSHHHHHTTCCEEEEEEESCCC
T ss_pred EEEc-CCCEEEEEecChhhhHhhCCCEEEEEEcCCCC
Confidence 9999 4799999999987764 889999999987543
No 88
>2bw4_A Copper-containing nitrite reductase; oxidoreductase, denitrification, catalysis, enzyme mechanism, nitrate assimilation; 0.90A {Achromobacter cycloclastes} SCOP: b.6.1.3 b.6.1.3 PDB: 1nib_A 1nia_A 1nid_A 1nie_A 1nic_A 1nif_A 2bw5_A 2bwd_A 2bwi_A 2nrd_A 2y1a_A 1kcb_A 1rzp_A* 1rzq_A 2avf_A 1as6_A 1aq8_A 1as7_A 1as8_A 2afn_A ...
Probab=98.64 E-value=1e-07 Score=94.64 Aligned_cols=100 Identities=17% Similarity=0.140 Sum_probs=73.0
Q ss_pred EEEEEcCCCC----CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-------CCcccCCCCceEEEE
Q 012003 51 QVIGINGQFP----GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-------TNCPIPAGWNWTYQF 119 (473)
Q Consensus 51 ~~~~~Ng~~p----gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-------tq~~I~PG~~~~Y~f 119 (473)
..+++||+.- -|.|++++|+++++++.|......-.|.||..+.. ..||... ....|.||++++..|
T Consensus 216 ~~~~iNG~~~~~~~~~~l~v~~G~r~Rl~n~~~~~~~~~~~i~gh~~~V--i~dG~~~~~p~~~~dtv~l~pGer~~v~v 293 (340)
T 2bw4_A 216 THIVFNGAVGALTGDHALTAAVGERVLVVHSQANRDTRPHLIGGHGDYV--WATGKFRNPPDLDQETWLIPGGTAGAAFY 293 (340)
T ss_dssp SEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEEETCCEEEE--ETTCCTTSCCEEEESCCCBCTTEEEEEEE
T ss_pred CEEEECCccCCccCCCceEcCCCCEEEEEECCCCCccceEEecCcceEE--eCCCcccCCccccceEEEeCCCceEEEEE
Confidence 5799999973 38999999999988777764332222334433222 2366542 124589999999999
Q ss_pred EECCCccceeeccChh-hhhcCCeeeEEEEEcCCC
Q 012003 120 QVKDQIGSFFYFPSLD-FQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 120 ~~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~~~~ 153 (473)
++. ++|.||||||.. .+...||.|.|.|+++..
T Consensus 294 ~~~-~pG~y~~~~h~~~~h~~~Gm~~~~~V~~~~~ 327 (340)
T 2bw4_A 294 TFR-QPGVYAYVNHNLIEAFELGAAGHFKVTGEWN 327 (340)
T ss_dssp ECC-SCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred ECC-CCeeeEEEcCchHHHHhCCCEEEEEECCCCc
Confidence 994 799999999987 577889999999987543
No 89
>2zoo_A Probable nitrite reductase; electron transfer, electron transport, heme, iron, binding, oxidoreductase, transport; HET: SUC HEM; 1.95A {Pseudoalteromonas haloplanktis}
Probab=98.55 E-value=1.1e-07 Score=97.79 Aligned_cols=101 Identities=18% Similarity=0.172 Sum_probs=81.7
Q ss_pred EEEEEEcCCCCC----ceEEEecCCEEEEEEEECC-CCCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEE
Q 012003 50 QQVIGINGQFPG----PILNVTTNWNVVVNVKNDL-DEPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQF 119 (473)
Q Consensus 50 ~~~~~~Ng~~pg----P~i~v~~Gd~v~v~v~N~l-~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f 119 (473)
...+++||+... |.|++++|+++++||.|.. ...+++|+||..... .+.||.+. ....|.||++++..|
T Consensus 188 ~~~~liNG~~~~~~~~~~l~v~~G~~vrlrliN~~~~~~~~~~i~g~~~~v-i~~DG~~~~p~~~~~~~l~pg~r~~v~v 266 (442)
T 2zoo_A 188 ADYVVFNGSVGSTTDENSLTAKVGETVRLYIGNGGPNLVSSFHVIGEIFDT-VYVEGGSLKNHNVQTTLIPAGGAAIVEF 266 (442)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTCEEEEEEEEEESSCCEEEEEETCCBSE-EEGGGSSCEECSBSEEEECTTEEEEEEE
T ss_pred CCEEEECCCcCCCCCCCceEeCCCCEEEEEEEeCCCCCceeeEEcCCEEEE-EecCCccCCCccceEEEECCCeeEEEEE
Confidence 357899999643 6899999999999999974 467899999986542 45788653 234589999999999
Q ss_pred EECCCccceeeccChhhh-hcCCeeeEEEEEcCC
Q 012003 120 QVKDQIGSFFYFPSLDFQ-RAAGGYGGIIINNRD 152 (473)
Q Consensus 120 ~~~~~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~ 152 (473)
++. ++|+||+|||...+ ...|+.+.|.|....
T Consensus 267 ~~~-~~G~y~~~~~~~~~~~~~g~~a~l~v~~~~ 299 (442)
T 2zoo_A 267 KVE-VPGTFILVDHSIFRAFNKGALAMLKVEGPD 299 (442)
T ss_dssp ECC-SCEEEEEEESSTHHHHTTSCEEEEEEESCC
T ss_pred EcC-CCCeEEEEecccccccccCceEEEEecCCC
Confidence 994 79999999998766 477999999998754
No 90
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=98.51 E-value=1.4e-07 Score=75.82 Aligned_cols=77 Identities=13% Similarity=0.091 Sum_probs=55.6
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-----CCcccCCCCceEEEEEECCCccceeeccChh
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-----TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLD 135 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-----tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~ 135 (473)
.+.|++++||+|++ +|.....+++....-.. -+|... ....+.||+++++.| +++|+|+|+|..
T Consensus 17 P~~i~v~~GdtV~~--~n~~~~~H~v~~~~~~~-----p~g~~~~~~~~~~~~~~~g~~~~~tf---~~~G~y~y~C~~- 85 (98)
T 1iuz_A 17 PSKISVAAGEAIEF--VNNAGFPHNIVFDEDAV-----PAGVDADAISYDDYLNSKGETVVRKL---STPGVYGVYCEP- 85 (98)
T ss_dssp SSEEEECTTCEEEE--EECSSCCEEEEECTTSS-----CTTCCHHHHCEEEEECSTTCEEEEEC---CSCEEEEEECTT-
T ss_pred CCEEEECCCCEEEE--EECCCCCEEEEEeCCCC-----ccccccccccccccccCCCCEEEEEc---CCCEEEEEEchh-
Confidence 37999999999655 58766778877665211 122210 113589999999888 379999999985
Q ss_pred hhhcCCeeeEEEEE
Q 012003 136 FQRAAGGYGGIIIN 149 (473)
Q Consensus 136 ~q~~~Gl~G~liV~ 149 (473)
|..+||.|.|+|+
T Consensus 86 -H~~~gM~G~I~V~ 98 (98)
T 1iuz_A 86 -HAGAGMKMTITVQ 98 (98)
T ss_dssp -TGGGTCEEEEEEC
T ss_pred -hccCCCEEEEEEC
Confidence 6667999999984
No 91
>1oe1_A Dissimilatory copper-containing nitrite reductase; denitrification; HET: PG4; 1.04A {Alcaligenes xylosoxidans} SCOP: b.6.1.3 b.6.1.3 PDB: 1oe3_A* 2xwz_A* 2vn3_A 2zon_A* 1haw_A 1hau_A* 2vm4_A* 2vw4_A* 2vw6_A* 2vw7_A* 2vm3_A* 1oe2_A* 2jl0_A* 2xx1_A 2xxg_A* 2xxf_A* 1gs8_A 1wa1_X* 1wa2_X* 2jl3_A* ...
Probab=98.50 E-value=3.4e-07 Score=90.67 Aligned_cols=99 Identities=18% Similarity=0.202 Sum_probs=72.3
Q ss_pred EEEEEEcCCCC----CceEEEecCCEEEEEEEECCCCC--ceeeeCCCCCCCCCCCCCCCC-C------CcccCCCCceE
Q 012003 50 QQVIGINGQFP----GPILNVTTNWNVVVNVKNDLDEP--LLLTWNGVQHRKNSWQDGVLG-T------NCPIPAGWNWT 116 (473)
Q Consensus 50 ~~~~~~Ng~~p----gP~i~v~~Gd~v~v~v~N~l~~~--~siH~HG~~~~~~~~~DGv~~-t------q~~I~PG~~~~ 116 (473)
...+++||+.. -|.|.+++|+++++...|..... +.||.|++.+ +.||.+. . ...|.||++++
T Consensus 209 ~~~~liNG~~~~~~~~~~l~v~~GervRlin~~~~~~~~~~~i~gh~~~V----i~DG~~~~p~~~~~dtv~i~pGer~d 284 (336)
T 1oe1_A 209 PSHIVFNGKVGALTGANALTAKVGETVLLIHSQANRDTRPHLIGGHGDWV----WETGKFANPPQRDLETWFIRGGSAGA 284 (336)
T ss_dssp CSEEEETTSTTTTSGGGCEEEETTCEEEEEEEESSSCBCEEETTCCEEEE----ETTCCTTSCCEEEESBCCBCTTEEEE
T ss_pred CCEEEECCeeccCCCCcceEcCCCCEEEEEecCCCCccceEEECCcCceE----eCCCcCcCCccccceEEEECCCCcEE
Confidence 35899999974 38999999998887554442221 2334444433 2488753 1 24589999999
Q ss_pred EEEEECCCccceeeccChhhh-hcCCeeeEEEEEcCCC
Q 012003 117 YQFQVKDQIGSFFYFPSLDFQ-RAAGGYGGIIINNRDV 153 (473)
Q Consensus 117 Y~f~~~~~~Gt~wYH~H~~~q-~~~Gl~G~liV~~~~~ 153 (473)
..+++. ++|+||||||...+ ...||.|.|.|+++..
T Consensus 285 vlv~~~-~pG~y~~~~h~~~~~~~~G~~~~~~V~~~~~ 321 (336)
T 1oe1_A 285 ALYTFK-QPGVYAYLNHNLIEAFELGAAGHIKVEGKWN 321 (336)
T ss_dssp EEEECC-SCEEEEEEESSHHHHHTTSCEEEEEEESCCC
T ss_pred EEEEcC-CCceEEEEechhhccccCCCeEEEEECCCCC
Confidence 999995 79999999998765 4789999999997554
No 92
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=98.48 E-value=3.1e-07 Score=77.02 Aligned_cols=75 Identities=11% Similarity=0.006 Sum_probs=50.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
+.|++++||+|++ +|.-. ++++..+- ...-||.. .....||++++|.| +++|+|||+|. .|..+|
T Consensus 21 ~~i~V~~GdtV~f--~~~~~-~H~v~~~~-----~~~p~~~~--~~~~~pG~t~~~tF---~~~G~y~y~C~--~H~~~g 85 (123)
T 1paz_A 21 AYIKANPGDTVTF--IPVDK-GHNVESIK-----DMIPEGAE--KFKSKINENYVLTV---TQPGAYLVKCT--PHYAMG 85 (123)
T ss_dssp SEEEECTTCEEEE--EESSS-SCCCEECT-----TCSCTTCC--CCBCCTTCCEEEEC---CSCEEEEEECT--TTGGGT
T ss_pred CEEEECCCCEEEE--EECCC-CeEEEEec-----ccCCCCcc--ceecCCCCEEEEEe---CCCEEEEEEeC--CcccCC
Confidence 7999999999765 45422 44444331 11112221 12346999988888 36999999997 466789
Q ss_pred eeeEEEEEcC
Q 012003 142 GYGGIIINNR 151 (473)
Q Consensus 142 l~G~liV~~~ 151 (473)
|.|.|+|.++
T Consensus 86 M~G~I~V~~~ 95 (123)
T 1paz_A 86 MIALIAVGDS 95 (123)
T ss_dssp CEEEEEESSS
T ss_pred CEEEEEEcCC
Confidence 9999999863
No 93
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=98.43 E-value=3.7e-07 Score=76.54 Aligned_cols=75 Identities=9% Similarity=0.050 Sum_probs=50.9
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
+.|++++||+|++ +|.-. ++++..+. ...-||.. ...+.||++++|.| +++|+|+|+|. .|..+|
T Consensus 21 ~~i~V~~GdtV~f--~n~~~-~H~v~~~~-----~~~p~~~~--~~~~~pG~t~~~tF---~~~G~y~y~C~--~H~~~g 85 (123)
T 1pmy_A 21 ALVRLKPGDSIKF--LPTDK-GHNVETIK-----GMAPDGAD--YVKTTVGQEAVVKF---DKEGVYGFKCA--PHYMMG 85 (123)
T ss_dssp SEEEECTTCEEEE--ECSSS-SCCCEECT-----TSSCTTCC--CCBCCTTSCEEEEC---CSCEEEEEECS--TTTTTT
T ss_pred CEEEECCCCEEEE--EECCC-CcEEEEec-----ccCCCCcc--ceecCCCCEEEEEe---CCCeEEEEEeC--CccccC
Confidence 7999999999654 55532 44444331 11112211 23457999988888 36999999997 466789
Q ss_pred eeeEEEEEcC
Q 012003 142 GYGGIIINNR 151 (473)
Q Consensus 142 l~G~liV~~~ 151 (473)
|.|.|+|.++
T Consensus 86 M~G~I~V~~~ 95 (123)
T 1pmy_A 86 MVALVVVGDK 95 (123)
T ss_dssp CEEEEEESSC
T ss_pred CEEEEEEcCC
Confidence 9999999864
No 94
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=98.42 E-value=4.8e-07 Score=76.37 Aligned_cols=92 Identities=14% Similarity=0.058 Sum_probs=61.2
Q ss_pred CCCCceEEEecC-CEEEEEEEECCCCC-----cee--eeCCCCC-------------CCCCCCCCCCC-CCcccCCCCce
Q 012003 58 QFPGPILNVTTN-WNVVVNVKNDLDEP-----LLL--TWNGVQH-------------RKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 58 ~~pgP~i~v~~G-d~v~v~v~N~l~~~-----~si--H~HG~~~-------------~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|--..|.|++| |+|+|+|+|.-..+ +++ -=+|... .-.+..|.--. ...-|.||++.
T Consensus 14 ~F~p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~ 93 (129)
T 1cuo_A 14 TYSTRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKT 93 (129)
T ss_dssp CCSCSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEE
T ss_pred eEccCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEE
Confidence 343358999999 99999999985432 332 2222100 00001111111 12358999999
Q ss_pred EEEEEEC--CCccceeeccChhhhhcCCeeeEEEEEc
Q 012003 116 TYQFQVK--DQIGSFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 116 ~Y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
++.|+++ .++|+|||.|-...|+. ||.|.|+|.+
T Consensus 94 svtf~~~~~~~~G~Y~f~C~~pgH~~-~M~G~i~V~~ 129 (129)
T 1cuo_A 94 SVKFKVSALSKDEAYTYFCSYPGHFS-MMRGTLKLEE 129 (129)
T ss_dssp EEEEEGGGCCTTSCEEEECCSTTCTT-TSEEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCCCchH-cCEEEEEEeC
Confidence 9999985 36999999998777777 8999999963
No 95
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=98.31 E-value=3e-06 Score=69.03 Aligned_cols=76 Identities=16% Similarity=0.180 Sum_probs=53.0
Q ss_pred CCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC-CCcccCCCCceEEEEEECCCccceeeccChhh
Q 012003 58 QFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG-TNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDF 136 (473)
Q Consensus 58 ~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~-tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~ 136 (473)
.|--+.|++++||+|++ .|.-...+++...... .|... ....+.||+++++.| +++|+|+|+|-.+
T Consensus 30 ~F~P~~i~V~~G~tV~~--~N~d~~~H~v~~~~~~-------~~~~~~~s~~l~~g~~~~~tf---~~~G~y~~~C~~H- 96 (106)
T 1id2_A 30 KYLTPEVTIKAGETVYW--VNGEVMPHNVAFKKGI-------VGEDAFRGEMMTKDQAYAITF---NEAGSYDYFCTPH- 96 (106)
T ss_dssp EESSSEEEECTTCEEEE--EECSSSCBCCEECTTT-------SSSSCEECCCBCTTEEEEEEE---CSCEEEEEECSSC-
T ss_pred EEeCCEEEECCCCEEEE--EECCCCcEEEEEeCCC-------CCcccccccccCCCCEEEEEe---CCCEEEEEEeCCC-
Confidence 44347999999999765 4876656666554321 11111 123578999999888 3699999999763
Q ss_pred hhcCCeeeEEEEE
Q 012003 137 QRAAGGYGGIIIN 149 (473)
Q Consensus 137 q~~~Gl~G~liV~ 149 (473)
. ||.|.|+|+
T Consensus 97 -~--~M~G~I~V~ 106 (106)
T 1id2_A 97 -P--FMRGKVIVE 106 (106)
T ss_dssp -T--TCEEEEEEC
T ss_pred -C--CCEEEEEEC
Confidence 2 999999984
No 96
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=98.28 E-value=1.9e-06 Score=75.79 Aligned_cols=97 Identities=13% Similarity=0.046 Sum_probs=63.2
Q ss_pred EEEcC--CCCCceEEE-ecCCEEEEEEEECCCCC-----ceeee--CCC---------CC---CCCCCCCCCCC-CCccc
Q 012003 53 IGING--QFPGPILNV-TTNWNVVVNVKNDLDEP-----LLLTW--NGV---------QH---RKNSWQDGVLG-TNCPI 109 (473)
Q Consensus 53 ~~~Ng--~~pgP~i~v-~~Gd~v~v~v~N~l~~~-----~siH~--HG~---------~~---~~~~~~DGv~~-tq~~I 109 (473)
+..++ +|--..|.| +.||+|+|+|+|.-..+ +++-+ +|. .. .-.+..|.-.. ...-|
T Consensus 47 I~~~d~m~F~P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l 126 (167)
T 3ay2_A 47 VESNDNMQFNTKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLI 126 (167)
T ss_dssp EEECTTSCBSCSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCB
T ss_pred EEeCCCceEecceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceee
Confidence 44443 454468999 99999999999986543 33222 221 00 00000111111 12358
Q ss_pred CCCCceEEEEEEC-CCccceeeccChhhhhcCCeeeEEEEEc
Q 012003 110 PAGWNWTYQFQVK-DQIGSFFYFPSLDFQRAAGGYGGIIINN 150 (473)
Q Consensus 110 ~PG~~~~Y~f~~~-~~~Gt~wYH~H~~~q~~~Gl~G~liV~~ 150 (473)
.||+++++.|+++ -++|+|||+|-...|.. ||.|.|+|.+
T Consensus 127 ~pGet~svtf~~~~lkpG~Y~f~Ct~PgH~~-gM~G~i~V~~ 167 (167)
T 3ay2_A 127 GGGEESSLTLDPAKLADGDYKFACTFPGHGA-LMNGKVTLVD 167 (167)
T ss_dssp CTTCEEEEEECGGGGTTSCEEEECCSTTGGG-TSEEEEEEEC
T ss_pred CCCCEEEEEEecCCCCCcEEEEEcCCCCchh-cCEEEEEEeC
Confidence 9999999999874 15999999998777776 8999999963
No 97
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=98.19 E-value=7.2e-06 Score=69.13 Aligned_cols=91 Identities=16% Similarity=0.078 Sum_probs=59.1
Q ss_pred CCCCceEEE-ecCCEEEEEEEECCCCC-----ceeee--CCC-------------CCCCCCCCCCCCC-CCcccCCCCce
Q 012003 58 QFPGPILNV-TTNWNVVVNVKNDLDEP-----LLLTW--NGV-------------QHRKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 58 ~~pgP~i~v-~~Gd~v~v~v~N~l~~~-----~siH~--HG~-------------~~~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|--..|.| ++||+|+|+|+|.-..+ +++-+ +|. ...-.+..|.--. ...-|.||+++
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (129)
T 2ccw_A 14 QYNVKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESD 93 (129)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEE
Confidence 343468999 99999999999986543 33322 220 0000011121111 12358999999
Q ss_pred EEEEEECC-Cccc-eeeccChhhhhcCCeeeEEEEE
Q 012003 116 TYQFQVKD-QIGS-FFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 116 ~Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
+..|+++. ++|+ |||.|-...|.. ||.|.|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~pgH~~-gM~G~i~V~ 128 (129)
T 2ccw_A 94 SVTFDVSKIAAGENYAYFCSFPGHWA-MMKGTLKLG 128 (129)
T ss_dssp EEEEEGGGSCTTCCEEEECCSTTGGG-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEeCCCChhH-cCEEEEEEe
Confidence 99999840 3655 999998777777 899999995
No 98
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=98.16 E-value=7.3e-06 Score=68.97 Aligned_cols=91 Identities=15% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCceEEE-ecCCEEEEEEEECCCCC-----ceeee--CC---------CCC----CCCCCCCCCCC-CCcccCCCCce
Q 012003 58 QFPGPILNV-TTNWNVVVNVKNDLDEP-----LLLTW--NG---------VQH----RKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 58 ~~pgP~i~v-~~Gd~v~v~v~N~l~~~-----~siH~--HG---------~~~----~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|--..|.| ++||+|+|+++|.-..+ +++-+ .| +.. .-.+..|.--. ....|.||+++
T Consensus 14 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~ 93 (128)
T 1nwp_A 14 SFNTKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKD 93 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred cEecCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEE
Confidence 444468999 99999999999986543 44332 11 100 00000111101 12348999999
Q ss_pred EEEEEECC-Cccc-eeeccChhhhhcCCeeeEEEEE
Q 012003 116 TYQFQVKD-QIGS-FFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 116 ~Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
++.|+++. ++|+ |||.|-...|.. ||.|.|+|.
T Consensus 94 svtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 128 (128)
T 1nwp_A 94 SVTFDVSKLAAGEKYGFFCSFPGHIS-MMKGTVTLK 128 (128)
T ss_dssp EEEEEGGGSCTTSCEEEECCSTTCGG-GSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEC
Confidence 99999841 3776 999998777777 899999983
No 99
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=98.14 E-value=8.6e-06 Score=68.50 Aligned_cols=91 Identities=19% Similarity=0.144 Sum_probs=60.0
Q ss_pred CCCCceEEE-ecCCEEEEEEEECCCCC-----ceeeeC--C-------------CCCCCCCCCCCCCC-CCcccCCCCce
Q 012003 58 QFPGPILNV-TTNWNVVVNVKNDLDEP-----LLLTWN--G-------------VQHRKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 58 ~~pgP~i~v-~~Gd~v~v~v~N~l~~~-----~siH~H--G-------------~~~~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|--..|.| +.||+|+|+++|.-..+ +++-+= + ....-.+..|.--. ....|.||+++
T Consensus 13 ~F~p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~ 92 (128)
T 2iaa_C 13 QFNTKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETD 92 (128)
T ss_dssp CBSCSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEE
T ss_pred eEecCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEE
Confidence 444468999 99999999999986543 443221 1 00000011121111 12357999999
Q ss_pred EEEEEECC-Cccc-eeeccChhhhhcCCeeeEEEEE
Q 012003 116 TYQFQVKD-QIGS-FFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 116 ~Y~f~~~~-~~Gt-~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
++.|+++. ++|+ |+|.|-...|.. ||.|.|+|.
T Consensus 93 ~vtf~~~~l~~G~~Y~f~C~~PgH~~-gM~G~i~V~ 127 (128)
T 2iaa_C 93 SVTFDVSKLKEGEDYAFFCSFPGHWS-IMKGTIELG 127 (128)
T ss_dssp EEEEESSCCCTTCCEEEECCSTTCTT-TSEEEEEEC
T ss_pred EEEEeccccCCCceEEEEECCCChhH-CCEEEEEEe
Confidence 99999841 4885 999998777777 899999995
No 100
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=98.14 E-value=8.8e-06 Score=83.86 Aligned_cols=93 Identities=16% Similarity=0.110 Sum_probs=66.3
Q ss_pred CCceE--EEEEEcCCCCCceEEEecCCEEEEEEEECC---CCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEE
Q 012003 46 LGDKQ--QVIGINGQFPGPILNVTTNWNVVVNVKNDL---DEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 46 dG~~~--~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l---~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~ 120 (473)
+|... .|...+-+|-.+.|+|++||+|++.|+|.. +..+++...++.. ...+.||++.++.|+
T Consensus 540 dGnkV~V~Mta~~~~FsP~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGI------------K~DaiPGrtnsvtFt 607 (638)
T 3sbq_A 540 DGNKVRVYMTSMAPAFGVQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGV------------SMEISPQQTSSITFV 607 (638)
T ss_dssp ETTEEEEEEEEETTEESCCEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE------------EEEECTTCEEEEEEE
T ss_pred CCceEEEEEEEEcccccCCEEEEecCceeEEEEecCCcCCCceeeeEecCCCc------------eeeeCCCCeEEEEEE
Confidence 45433 445556667668999999999999999963 3444444333211 235789999999999
Q ss_pred ECCCccceeeccChh-hhhcCCeeeEEEEEcC
Q 012003 121 VKDQIGSFFYFPSLD-FQRAAGGYGGIIINNR 151 (473)
Q Consensus 121 ~~~~~Gt~wYH~H~~-~q~~~Gl~G~liV~~~ 151 (473)
+ +++|+|||+|..- ...-.+|.|.|+|+++
T Consensus 608 a-dkPGvY~y~CSE~CGa~Hs~M~G~ViVEPa 638 (638)
T 3sbq_A 608 A-DKPGLHWYYCSWFCHALHMEMVGRMMVEPA 638 (638)
T ss_dssp C-CSCEEEEEECCSCCSTTCTTCEEEEEEECC
T ss_pred c-CCCEEEEEECCCcCCCCcccceEEEEEecC
Confidence 8 5899999999841 1222479999999873
No 101
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=98.11 E-value=4.7e-06 Score=69.63 Aligned_cols=73 Identities=12% Similarity=-0.020 Sum_probs=49.1
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccChhhhhcCC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSLDFQRAAG 141 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~~~q~~~G 141 (473)
+.|++++||+|++ .|... .++++...- ..-+|. ....+.||++++|.| +++|+|||+|-. |..
T Consensus 21 ~~i~V~~GdtV~f--~n~d~-~H~v~~~~~-----~~p~~~--~~~~~~~g~t~~~tF---~~~G~y~y~C~~--H~~-- 83 (122)
T 2ux6_A 21 ASLKVAPGDTVTF--IPTDK-GHNVETIKG-----MIPDGA--EAFKSKINENYKVTF---TAPGVYGVKCTP--HPF-- 83 (122)
T ss_dssp SEEEECTTEEEEE--EESSS-SCCCEECTT-----CSCTTC--CCCBCCTTCCEEEEE---CSCEEEEEEETT--EEE--
T ss_pred CEEEECCCCEEEE--EECCC-CcEEEEccc-----ccCCCc--ceeecCCCCEEEEEe---CCCEEEEEEeCC--Ccc--
Confidence 6999999998655 56533 444444321 111221 123457999999888 368999999976 332
Q ss_pred eeeEEEEEcC
Q 012003 142 GYGGIIINNR 151 (473)
Q Consensus 142 l~G~liV~~~ 151 (473)
|.|.|+|.+.
T Consensus 84 M~G~I~V~~~ 93 (122)
T 2ux6_A 84 MVGVVQVGDA 93 (122)
T ss_dssp EEEEEEESSS
T ss_pred CEEEEEEeCC
Confidence 9999999864
No 102
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=97.59 E-value=0.00027 Score=58.59 Aligned_cols=88 Identities=16% Similarity=0.168 Sum_probs=56.0
Q ss_pred CCCCceEEEec-CCEEEEEEEECCCCC-----ceeee-----------CCC----CCCCCCCCCCCCC-CCcccCCCCce
Q 012003 58 QFPGPILNVTT-NWNVVVNVKNDLDEP-----LLLTW-----------NGV----QHRKNSWQDGVLG-TNCPIPAGWNW 115 (473)
Q Consensus 58 ~~pgP~i~v~~-Gd~v~v~v~N~l~~~-----~siH~-----------HG~----~~~~~~~~DGv~~-tq~~I~PG~~~ 115 (473)
+|--..|.|+. |++|+|+|+|....+ +++=+ -|+ ...-.+..|.-.. ...-|.||+++
T Consensus 14 ~F~p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~ 93 (125)
T 3fsa_A 14 QFNTNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKD 93 (125)
T ss_dssp CBSCSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEE
T ss_pred EEecCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEE
Confidence 34457999986 999999999996542 32111 111 1000111122111 22348999999
Q ss_pred EEEEEEC--CCccceeeccChhhhhcCCeeeEEEEE
Q 012003 116 TYQFQVK--DQIGSFFYFPSLDFQRAAGGYGGIIIN 149 (473)
Q Consensus 116 ~Y~f~~~--~~~Gt~wYH~H~~~q~~~Gl~G~liV~ 149 (473)
+..|+.+ .++|+|.|-|. .|. ||.|.|+|.
T Consensus 94 ~vtf~~~~l~~~G~y~f~C~--gH~--~M~G~v~V~ 125 (125)
T 3fsa_A 94 SVTFDVSKLKEGEQYMFFCA--AHA--AMKGTLTLK 125 (125)
T ss_dssp EEEEEGGGC---CCEEEECS--SST--TCEEEEEEC
T ss_pred EEEEeCcCcCCCccEEEEcC--CCC--CcEEEEEEC
Confidence 9999986 26899999999 555 899999983
No 103
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=97.13 E-value=0.0027 Score=53.67 Aligned_cols=73 Identities=14% Similarity=0.168 Sum_probs=53.6
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh---hhhh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL---DFQR 138 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~---~~q~ 138 (473)
..|.++.|++|++.++|. +..+++..-.+.. ...+.||+.-++.|++ +++|+|+|+|.. ..|
T Consensus 60 ~~l~Vp~G~~V~~~vts~-DV~Hsf~ip~~~~------------k~d~~PG~~~~~~~~~-~~~G~y~~~C~e~CG~~H- 124 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSP-DVIHGFHVEGTNI------------NVEVLPGEVSTVRYTF-KRPGEYRIICNQYCGLGH- 124 (135)
T ss_dssp SSEEEETTSEEEEEEEBS-SSCEEEEETTSSC------------EEEECBTBCEEEEEEC-CSCEEEEEECCSCCSTTS-
T ss_pred CEEEEcCCCEEEEEEEeC-CccceEEecCCCc------------eeEeCCCCcEEEEEEc-CCCEEEEEECcccCCCCc-
Confidence 489999999999999997 4444443322211 1346799988999998 589999999963 233
Q ss_pred cCCeeeEEEEEc
Q 012003 139 AAGGYGGIIINN 150 (473)
Q Consensus 139 ~~Gl~G~liV~~ 150 (473)
.+|.|.++|.+
T Consensus 125 -~~M~g~v~V~~ 135 (135)
T 2cua_A 125 -QNMFGTIVVKE 135 (135)
T ss_dssp -TTCEEEEEEEC
T ss_pred -CCCEEEEEEEC
Confidence 38999999864
No 104
>2aan_A Auracyanin A; cupredoxin fold, electron transport; 1.85A {Chloroflexus aurantiacus}
Probab=97.01 E-value=0.0019 Score=54.90 Aligned_cols=78 Identities=14% Similarity=0.146 Sum_probs=50.6
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEe---ecC-------ceee----eeeeeEEEEcCCceEEEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE---TEG-------SYTV----QQNYTNMDIHVGQSFSFLVTT 282 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG-------~~~~----p~~~d~v~l~pGeR~dv~v~~ 282 (473)
++.+++++|++++|++.|.+....|.|.+.+....+.+ .|+ .++. ....++..|.|||++++.+++
T Consensus 34 p~~i~v~~G~~V~~~~~N~~~~~~H~~~i~~~~~~~~~~~~~~~~~~g~~~~~~p~~~~~~~~~t~~l~pGet~~v~f~~ 113 (139)
T 2aan_A 34 KTELTVSAGQTVTIRFKNNSAVQQHNWILVKGGEAEAANIANAGLSAGPAANYLPADKSNIIAESPLANGNETVEVTFTA 113 (139)
T ss_dssp CSEEEECTTCEEEEEEECCCSSCCBCCEEESSCHHHHHHHHHHHHHHCGGGTTCCSCCTTEEEECCCBCTTCEEEEEEEC
T ss_pred CCeEEECCCCEEEEEEEeCCCCCCeeEEEeccccccchhhhhhhhcccccccccCcccccccccccccCCCCEEEEEEEC
Confidence 47899999999999999987542344444432210000 010 1111 123467779999999999999
Q ss_pred CCCCCcceEEEEee
Q 012003 283 DQNASSDYYIVASP 296 (473)
Q Consensus 283 ~~~~g~~y~i~~~~ 296 (473)
+ .+| .|++.+..
T Consensus 114 ~-~pG-~y~f~C~~ 125 (139)
T 2aan_A 114 P-AAG-TYLYICTV 125 (139)
T ss_dssp C-SSE-EEEEECCS
T ss_pred C-CCe-EEEEEcCC
Confidence 8 468 89987753
No 105
>3cvb_A Plastocyanin; cupredoxin, SELF assembly, copper, electron transport, metal-binding, transport; 1.40A {Phormidium laminosum} PDB: 3cvc_A 3cvd_A 2w8c_A 2w88_A 2q5b_A 1baw_A 3bqv_A
Probab=96.90 E-value=0.00047 Score=55.39 Aligned_cols=73 Identities=15% Similarity=0.221 Sum_probs=50.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
.+.+++++|++++| .|.+.. .+.+++++..+.. .+|........++..|.||+++++.+++++.+| .||+.++
T Consensus 18 p~~i~v~~Gd~V~~--~N~~~~-~H~v~~~~~~~~~--~~g~~~~~~~~~~~~i~pG~~~~~~f~~~~~~G-~y~y~C~ 90 (105)
T 3cvb_A 18 PANVTVHPGDTVKW--VNNKLP-PHNILFDDKQVPG--ASKELADKLSHSQLMFSPGESYEITFSSDFPAG-TYTYYCA 90 (105)
T ss_dssp SSEEEECTTEEEEE--EECSSC-CEEEEECTTSSGG--GCHHHHHHHCEEEEECSTTCEEEEEECTTSCSE-EEEEECT
T ss_pred CCEEEEcCCCEEEE--EECCCC-CCeEEEeCCCCCc--ccccccccccccccccCCCCeEEEEEecCCCCe-eEEEEeC
Confidence 47899999999865 587643 7899998875432 111110001136788999999999888744678 9999876
No 106
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=96.87 E-value=0.0055 Score=53.60 Aligned_cols=81 Identities=12% Similarity=0.123 Sum_probs=58.4
Q ss_pred cCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-
Q 012003 56 NGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL- 134 (473)
Q Consensus 56 Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~- 134 (473)
+-+|--..|.++.|++|++.++|. +..++...-++.. +.-+.||+.-++.|++ +++|+|++.|..
T Consensus 87 ~~~f~Pn~l~VP~G~~Vr~~vTS~-DViHsf~IP~lgi------------k~da~PG~~n~~~~~~-~kpG~y~g~Cse~ 152 (168)
T 3s8f_B 87 AFGYQPNPIEVPQGAEIVFKITSP-DVIHGFHVEGTNI------------NVEVLPGEVSTVRYTF-KRPGEYRIICNQY 152 (168)
T ss_dssp TTEEESSSEEEETTSEEEEEEECS-SSCEEEEETTSSC------------EEEECTTBCEEEEEEC-CSCEEEEEECCSC
T ss_pred eceEecCEEEEeCCCeEEEEEecC-CceEEEEECCCCe------------EEEecCCceeEEEEEe-CCCEEEEEECCcC
Confidence 334433689999999999999997 5555554443321 2346799999999998 689999999983
Q ss_pred hhhhcCCeeeEEEEEc
Q 012003 135 DFQRAAGGYGGIIINN 150 (473)
Q Consensus 135 ~~q~~~Gl~G~liV~~ 150 (473)
-...-.+|.|-++|++
T Consensus 153 CG~~Hs~M~g~V~V~e 168 (168)
T 3s8f_B 153 CGLGHQNMFGTIVVKE 168 (168)
T ss_dssp CSTTGGGCEEEEEEEC
T ss_pred CCCCcCCCEEEEEEeC
Confidence 2233347999999974
No 107
>1iby_A Nitrosocyanin; RED copper, cupredoxin, beta hairpin, metal binding protein; 1.65A {Nitrosomonas europaea} SCOP: b.6.1.4 PDB: 1ibz_A 1ic0_A
Probab=96.84 E-value=0.0036 Score=50.92 Aligned_cols=61 Identities=23% Similarity=0.287 Sum_probs=47.9
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
++.+++++|++++|++.|.... .|.|.+.+. | -+..+.||+++++.++++ .+| .|+...+.
T Consensus 37 p~~i~v~~G~~V~~~~~n~d~~-~H~~~i~~~--------~--------~~~~i~pG~~~~~~f~~~-~~G-~y~~~C~~ 97 (112)
T 1iby_A 37 PETLVVKKGDAVKVVVENKSPI-SEGFSIDAF--------G--------VQEVIKAGETKTISFTAD-KAG-AFTIWCQL 97 (112)
T ss_dssp SCEEEEETTCEEEEEEEECSSS-CEEEEEGGG--------T--------EEEEECTTCEEEEEEECC-SCE-EEEEBCSS
T ss_pred CCEEEEeCCCEEEEEEEECCCC-eEEEEEcCC--------C--------ceeEeCCCCEEEEEEECC-CCE-EEEEECCC
Confidence 3789999999999999999754 566655543 1 146799999999999988 478 99997754
No 108
>4hci_A Cupredoxin 1; structural genomics, niaid, national institute of allergy AN infectious diseases; 1.63A {Bacillus anthracis} PDB: 4hcg_A 4hcf_A
Probab=96.10 E-value=0.015 Score=46.16 Aligned_cols=60 Identities=18% Similarity=0.330 Sum_probs=46.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|++.|.+.. .|.|.+++... ...+.||+..++.++++ .+| .|.+...
T Consensus 27 P~~i~v~~G~tV~~~~~n~d~~-~H~~~~~~~~~----------------~~~~~pg~~~~~~~t~~-~~G-~Y~y~C~ 86 (100)
T 4hci_A 27 PNVITIPINESTTLLLKNKGKS-EHTFTIKKLGI----------------DVVVESGKEKNITVKPK-SAG-TYELICR 86 (100)
T ss_dssp SSEEEECTTSCEEEEEEECSSS-CEEEEEGGGTE----------------EEEECTTCEEEEEECCC-SCE-EEEEECT
T ss_pred CCEEEECCCCEEEEEEEcCCCc-eEEEEEecCCc----------------ceeecCCcceeEEEecc-cCc-eEEEECc
Confidence 3679999999999999998754 56666654432 24578999999999988 468 8988764
No 109
>2cal_A Rusticyanin; iron respiratory electron transport chain, blue protein, electron transport, metal- binding, periplasmic; 1.10A {Thiobacillus ferrooxidans} PDB: 1cur_A 1gy2_A 1a3z_A 1e30_A 1gy1_A 1rcy_A 1a8z_A 2cak_A
Probab=95.52 E-value=0.025 Score=48.81 Aligned_cols=84 Identities=14% Similarity=0.125 Sum_probs=51.9
Q ss_pred eEEEcCCCCCCCCCCcCCCCCCceEEEEeCCcEEEEEEeEeCCCceeEEEEeCc--eeEEEeecCceeeeeeeeEEEEcC
Q 012003 195 GILINGLGPYRYDAAIVPDGIPYQLINVEPGKTYRLRVHNVGISTSLNFRIQNH--NLLLVETEGSYTVQQNYTNMDIHV 272 (473)
Q Consensus 195 ~~liNG~~~~~~~~~~~~~~~~~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh--~~~via~DG~~~~p~~~d~v~l~p 272 (473)
.+.++|... |.|++++|++++|++.|.+....|.|.+... .+.....+. .+.........|.|
T Consensus 52 ~~~~~g~~~--------------p~i~V~~GD~V~~~~tN~~~~~~H~~~i~~~~~~~~~~~~~~-~~~~~~~~~~~i~P 116 (154)
T 2cal_A 52 SFEVHDKKN--------------PTLEIPAGATVDVTFINTNKGFGHSFDITKKGPPYAVMPVID-PIVAGTGFSPVPKD 116 (154)
T ss_dssp CEEETTEES--------------CEEEECTTCEEEEEEEECCTTCCCCCEEESCCSCCCSSCCCC-SEEEEBCCCCCCBT
T ss_pred cccccCCCC--------------CEEEEeCCCEEEEEEEcCCCCeeeEEEEeecCcchhcccccc-ccccccccccccCC
Confidence 577787764 8899999999999999975333566555532 111000000 01011001126789
Q ss_pred Cc--eEEEEEEeCCCCCcceEEEEee
Q 012003 273 GQ--SFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 273 Ge--R~dv~v~~~~~~g~~y~i~~~~ 296 (473)
|| ..++.+++ + +| .||..++.
T Consensus 117 G~sgt~t~tft~-~-pG-tY~y~C~~ 139 (154)
T 2cal_A 117 GKFGYTDFTWHP-T-AG-TYYYVCQI 139 (154)
T ss_dssp TBEEEEEEEECC-C-SE-EEEEECCS
T ss_pred CCceEEEEEEEE-C-Cc-eEEEECCC
Confidence 99 88888887 4 68 99998753
No 110
>2gim_A Plastocyanin; beta sheet, Cu, helix, electron transport; 1.60A {Anabaena variabilis} SCOP: b.6.1.1 PDB: 1fa4_A 1nin_A 1tu2_A* 2cj3_A
Probab=95.39 E-value=0.0024 Score=51.26 Aligned_cols=73 Identities=16% Similarity=0.167 Sum_probs=46.3
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
++.+++++|++++|+ |.+.. .|.|++++..+.. .+|........+++.+.|||++++.++++..+| .||+...
T Consensus 19 P~~i~v~~Gd~V~~~--n~~~~-~H~~~~~~~~~~~--~~g~~~~~~~~~~~~~~pG~~~~~~f~~~~~~G-~y~y~C~ 91 (106)
T 2gim_A 19 PAKLTIKPGDTVEFL--NNKVP-PHNVVFDAALNPA--KSADLAKSLSHKQLLMSPGQSTSTTFPADAPAG-EYTFYCE 91 (106)
T ss_dssp SSEEEECTTCEEEEE--ECSSS-CCCBEECSSSSTT--CCHHHHHHHCBCSCCCSTTCEEEEECCTTCCSE-EEEEECT
T ss_pred CCEEEECCCCEEEEE--ECCCC-CceEEEeCCCCcc--cccccchhccccceeeCCCCEEEEEEecCCCCc-eEEEEeC
Confidence 477999999998875 87643 5666666542210 112110001124677899999999777644678 9999765
No 111
>2ccw_A Azurin II, AZN-2; electron transport (cuproprotein), alcaligenes xylosoxidans, electron transfer, cupredoxin, electron transport; 1.13A {Alcaligenes xylosoxydans} SCOP: b.6.1.1 PDB: 1dz0_A 1dyz_A 1aiz_A 1azb_A 1azc_A 1uri_A 2aza_A 1a4a_A 1a4b_A 1a4c_A
Probab=95.39 E-value=0.015 Score=48.67 Aligned_cols=78 Identities=19% Similarity=0.199 Sum_probs=49.4
Q ss_pred ceEEEE-eCCcEEEEEEeEeCCCc----eeEEEEeCce-eEEEeec-------Cceeee----eeeeEEEEcCCceEEEE
Q 012003 217 YQLINV-EPGKTYRLRVHNVGIST----SLNFRIQNHN-LLLVETE-------GSYTVQ----QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v-~~G~~~rlRliN~~~~~----~~~~~i~gh~-~~via~D-------G~~~~p----~~~d~v~l~pGeR~dv~ 279 (473)
+..|+| ++|++++|.+.|.+... .|.|.|.... +.-++.| -.++.+ ....+-.|.|||++++.
T Consensus 17 p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pGet~svt 96 (129)
T 2ccw_A 17 VKEIVVDKSCKQFTMHLKHVGKMAKVAMGHNLVLTKDADKQAVATDGMGAGLAQDYVKAGDTRVIAHTKVIGGGESDSVT 96 (129)
T ss_dssp CSEEEECTTCSEEEEEEEECSCCCHHHHCBCCEEEEGGGHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred cceEEEecCCCEEEEEEEECCCcccccCcceEEEcCccchhhhHHHhhhhcccccccccccccceeeeeEECCCCEEEEE
Confidence 478999 99999999999998652 3666665432 1100111 111110 11233468999999999
Q ss_pred EEeC--CCCCcceEEEEe
Q 012003 280 VTTD--QNASSDYYIVAS 295 (473)
Q Consensus 280 v~~~--~~~g~~y~i~~~ 295 (473)
++++ ++++ +||....
T Consensus 97 f~~~~l~~G~-~Y~f~C~ 113 (129)
T 2ccw_A 97 FDVSKIAAGE-NYAYFCS 113 (129)
T ss_dssp EEGGGSCTTC-CEEEECC
T ss_pred EeccccCCCc-eEEEEeC
Confidence 9987 5555 7998664
No 112
>1qhq_A Protein (auracyanin); electron transfer, cupredoxin, blue copper protein, azurin-L thermophIle; 1.55A {Chloroflexus aurantiacus} SCOP: b.6.1.1 PDB: 1ov8_A
Probab=95.34 E-value=0.0099 Score=50.37 Aligned_cols=77 Identities=13% Similarity=0.084 Sum_probs=50.0
Q ss_pred ceEEEEeCCcEEEEEEeE--eCCCceeEEEEeCc--eeEEEeecC-------ceee-----eeeeeEEEEcCCceEEEEE
Q 012003 217 YQLINVEPGKTYRLRVHN--VGISTSLNFRIQNH--NLLLVETEG-------SYTV-----QQNYTNMDIHVGQSFSFLV 280 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN--~~~~~~~~~~i~gh--~~~via~DG-------~~~~-----p~~~d~v~l~pGeR~dv~v 280 (473)
+..+++++|++++|++.| .+. ..|.|.+.+. .+.-...+| .++. ....++..|.||++.++.+
T Consensus 32 P~~i~v~~G~tV~~~~~N~~~~~-~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~l~pG~~~~~~~ 110 (140)
T 1qhq_A 32 QTSLSLPANTVVRLDFVNQNNLG-VQHNWVLVNGGDDVAAAVNTAAQNNADALFVPPPDTPNALAWTAMLNAGESGSVTF 110 (140)
T ss_dssp CSEEEEETTCEEEEEEEECCSSC-CCBCCEEESSSHHHHHHHHHHHHTCGGGTTCCCTTCTTEEEECCCBCTTEEEEEEE
T ss_pred CCeEEECCCCEEEEEEECCCCCC-CceeEEEeccCcchhhhhhhhhhhcccccccCccccccccccceeeCCCceeEEEE
Confidence 478999999999999999 443 3566665521 110000011 1111 1234567899999999999
Q ss_pred EeCCCCCcceEEEEee
Q 012003 281 TTDQNASSDYYIVASP 296 (473)
Q Consensus 281 ~~~~~~g~~y~i~~~~ 296 (473)
++++ +| .|++....
T Consensus 111 ~~~~-~G-~y~f~C~~ 124 (140)
T 1qhq_A 111 RTPA-PG-TYLYICTF 124 (140)
T ss_dssp ECCS-SE-EEEEECCS
T ss_pred EeCC-Ce-eEEEEeCC
Confidence 9984 68 89997764
No 113
>1cuo_A Protein (azurin ISO-2); beta barrel, periplasmic, electron transport; 1.60A {Methylomonas SP} SCOP: b.6.1.1 PDB: 1uat_A
Probab=95.04 E-value=0.021 Score=47.75 Aligned_cols=78 Identities=15% Similarity=0.163 Sum_probs=49.1
Q ss_pred ceEEEEeCC-cEEEEEEeEeCCCc----eeEEEEeCce-eEEEeecC-------ceee---e-eeeeEEEEcCCceEEEE
Q 012003 217 YQLINVEPG-KTYRLRVHNVGIST----SLNFRIQNHN-LLLVETEG-------SYTV---Q-QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v~~G-~~~rlRliN~~~~~----~~~~~i~gh~-~~via~DG-------~~~~---p-~~~d~v~l~pGeR~dv~ 279 (473)
+..++|++| ++++|.+.|.+... .|.|.|.... +.-++.|+ .++. + ....+-.|.|||++++.
T Consensus 17 p~~i~V~~G~~~vtv~~~N~g~~~~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~v~~~~~~~~~~t~~l~pGet~svt 96 (129)
T 1cuo_A 17 TRSISVPASCAEFTVNFEHKGHMPKTGMGHNWVLAKSADVGDVAKEGAHAGADNNFVTPGDKRVIAFTPIIGGGEKTSVK 96 (129)
T ss_dssp CSEEEEETTCSEEEEEEEECSSSCHHHHCBCCEEEEGGGHHHHHHHHHTTCGGGTTSCTTCTTCSEECCCBCTTCEEEEE
T ss_pred cCeEEEcCCCeEEEEEEEECCCCcccccccceEEecCcchhhhHHHhhhccccccccccccccceeeeeEECCCCEEEEE
Confidence 478999999 99999999998642 4555554331 00000111 1111 0 01234468999999999
Q ss_pred EEeC--CCCCcceEEEEe
Q 012003 280 VTTD--QNASSDYYIVAS 295 (473)
Q Consensus 280 v~~~--~~~g~~y~i~~~ 295 (473)
++++ ..+| .||....
T Consensus 97 f~~~~~~~~G-~Y~f~C~ 113 (129)
T 1cuo_A 97 FKVSALSKDE-AYTYFCS 113 (129)
T ss_dssp EEGGGCCTTS-CEEEECC
T ss_pred EeccccCCCc-eEEEEeC
Confidence 9986 2468 9998664
No 114
>1nwp_A Azurin; electron transport, cupredoxin, electron transfer; 1.60A {Pseudomonas putida} SCOP: b.6.1.1 PDB: 1nwo_A 1joi_A
Probab=94.91 E-value=0.019 Score=47.93 Aligned_cols=78 Identities=18% Similarity=0.225 Sum_probs=49.2
Q ss_pred ceEEEE-eCCcEEEEEEeEeCCCc----eeEEEEeCce-eEEEeecC-------ceeee----eeeeEEEEcCCceEEEE
Q 012003 217 YQLINV-EPGKTYRLRVHNVGIST----SLNFRIQNHN-LLLVETEG-------SYTVQ----QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v-~~G~~~rlRliN~~~~~----~~~~~i~gh~-~~via~DG-------~~~~p----~~~d~v~l~pGeR~dv~ 279 (473)
+..++| ++|++++|.+.|.+... .|.|.+.... +.-++.|| .++.+ ....+-.|.|||++++.
T Consensus 17 p~~i~V~k~G~~vtv~~~N~g~~p~~~m~H~~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGet~svt 96 (128)
T 1nwp_A 17 TKDIAIDKSCKTFTVELTHSGSLPKNVMGHNLVISKEADMQPIATDGLSAGIDKQYLKDGDARVIAHTKVIGAGEKDSVT 96 (128)
T ss_dssp CSEEEECTTCSEEEEEEEECSSCCHHHHCBCCEEEEGGGHHHHHHHHTTTCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred cCEEEEecCCCEEEEEEEECCCCcccCCCceEEEccccchhhHHHHHhhccccccccccccchhheeeeeeCCCCEEEEE
Confidence 477999 99999999999998652 3666664321 11011111 12211 11223358999999999
Q ss_pred EEeC--CCCCcceEEEEe
Q 012003 280 VTTD--QNASSDYYIVAS 295 (473)
Q Consensus 280 v~~~--~~~g~~y~i~~~ 295 (473)
++++ ++++ +|+....
T Consensus 97 f~~~~l~~G~-~Y~f~C~ 113 (128)
T 1nwp_A 97 FDVSKLAAGE-KYGFFCS 113 (128)
T ss_dssp EEGGGSCTTS-CEEEECC
T ss_pred EeccccCCCc-eEEEEEC
Confidence 9986 4444 6998664
No 115
>2iaa_C Azurin; quinoprotein, tryptophan tryptophylquinone, cupredoxin, electron transfer, oxidoreductase/electron transport comple; HET: TRQ; 1.95A {Alcaligenes faecalis} PDB: 2h47_C* 2h3x_C*
Probab=94.59 E-value=0.036 Score=46.20 Aligned_cols=78 Identities=18% Similarity=0.204 Sum_probs=48.5
Q ss_pred ceEEEE-eCCcEEEEEEeEeCCCc----eeEEEEeCce-eEEEeec-------Cceeee----eeeeEEEEcCCceEEEE
Q 012003 217 YQLINV-EPGKTYRLRVHNVGIST----SLNFRIQNHN-LLLVETE-------GSYTVQ----QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v-~~G~~~rlRliN~~~~~----~~~~~i~gh~-~~via~D-------G~~~~p----~~~d~v~l~pGeR~dv~ 279 (473)
+..++| ++|++++|.+.|.+... .|.|.|.... +.-++.| -.++.+ ....+-.|.|||++++.
T Consensus 16 p~~i~V~k~G~~vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~t~~l~pGes~~vt 95 (128)
T 2iaa_C 16 TKSIVVDKTCKEFTINLKHTGKLPKAAMGHNVVVSKKSDESAVATDGMKAGLNNDYVKAGDERVIAHTSVIGGGETDSVT 95 (128)
T ss_dssp CSEEEECTTCSEEEEEEEECSCSCHHHHCBCCEEEETTHHHHHHHHHHHHCGGGTTSCTTCTTEEEECCCBCTTCEEEEE
T ss_pred cCEEEEecCCcEEEEEEEECCCCcccCCCceEEEccccchhhHHHhhhhccccccccccccchhhccceeeCCCCEEEEE
Confidence 477999 99999999999998652 3666554321 1101111 111111 11234468999999999
Q ss_pred EEeC--CCCCcceEEEEe
Q 012003 280 VTTD--QNASSDYYIVAS 295 (473)
Q Consensus 280 v~~~--~~~g~~y~i~~~ 295 (473)
++++ ++++ +|+....
T Consensus 96 f~~~~l~~G~-~Y~f~C~ 112 (128)
T 2iaa_C 96 FDVSKLKEGE-DYAFFCS 112 (128)
T ss_dssp EESSCCCTTC-CEEEECC
T ss_pred EeccccCCCc-eEEEEEC
Confidence 9987 5444 6988654
No 116
>3ay2_A Lipid modified azurin protein; beta sandwich, bacterial protein, anticancer, anti-HIV/AIDS, antiparasitic activity, antitumor protein; 1.90A {Neisseria gonorrhoeae}
Probab=93.72 E-value=0.032 Score=48.71 Aligned_cols=78 Identities=18% Similarity=0.231 Sum_probs=48.7
Q ss_pred ceEEEE-eCCcEEEEEEeEeCCCc----eeEEEEeCce-eEEEeecC------ceeee----eeeeEEEEcCCceEEEEE
Q 012003 217 YQLINV-EPGKTYRLRVHNVGIST----SLNFRIQNHN-LLLVETEG------SYTVQ----QNYTNMDIHVGQSFSFLV 280 (473)
Q Consensus 217 ~~~~~v-~~G~~~rlRliN~~~~~----~~~~~i~gh~-~~via~DG------~~~~p----~~~d~v~l~pGeR~dv~v 280 (473)
+..|+| ++|++++|.|.|.+... .|.|.|.... +.-++.|+ .++.. ....+..|.|||++++.+
T Consensus 57 P~~itV~kaG~~Vtv~~~N~g~~p~~~m~Hn~vi~~~~~~~~v~~~~m~~~~~~~v~~~d~~vl~~t~~l~pGet~svtf 136 (167)
T 3ay2_A 57 TKDIQVSKACKEFTITLKHTGTQPKASMGHNLVIAKAEDMDGVFKDGVGAADTDYVKPDDARVVAHTKLIGGGEESSLTL 136 (167)
T ss_dssp CSEEEEETTCSSEEEEEEECSCSCHHHHCBCCEEEEGGGHHHHHHHHGGGGGGTTSCTTCTTEEEECCCBCTTCEEEEEE
T ss_pred cceEEEecCCCEEEEEEEECCCCccccccceEEeccCcchhhhHHHhhhccccccccccccchhccceeeCCCCEEEEEE
Confidence 477999 99999999999998642 3555554321 00000011 11111 112344689999999999
Q ss_pred EeCC-CCCcceEEEEe
Q 012003 281 TTDQ-NASSDYYIVAS 295 (473)
Q Consensus 281 ~~~~-~~g~~y~i~~~ 295 (473)
+++. .+| .||....
T Consensus 137 ~~~~lkpG-~Y~f~Ct 151 (167)
T 3ay2_A 137 DPAKLADG-DYKFACT 151 (167)
T ss_dssp CGGGGTTS-CEEEECC
T ss_pred ecCCCCCc-EEEEEcC
Confidence 8862 367 8998664
No 117
>2plt_A Plastocyanin; electron transport; 1.50A {Chlamydomonas reinhardtii} SCOP: b.6.1.1
Probab=93.67 E-value=0.076 Score=41.56 Aligned_cols=68 Identities=13% Similarity=0.149 Sum_probs=44.5
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
++.+++++|++++| .|.+.. .|.+++++..+ -+|........+++.+.||+++.+. ++ .+| .|++...
T Consensus 17 P~~i~v~~G~~V~~--~n~~~~-~H~~~~~~~~~----p~~~~~~~~~~~~~~~~pG~~~~~t--f~-~~G-~y~y~C~ 84 (98)
T 2plt_A 17 PKTLTIKSGETVNF--VNNAGF-PHNIVFDEDAI----PSGVNADAISRDDYLNAPGETYSVK--LT-AAG-EYGYYCE 84 (98)
T ss_dssp SSEEEECTTCEEEE--EECSSC-CEEEEECGGGS----CTTCCHHHHCEEEEECSTTCEEEEE--CC-SCE-EEEEECG
T ss_pred CCEEEECCCCEEEE--EECCCC-ceEEEEeCCCC----CCccccccccccceecCCCCEEEEE--eC-CCe-EEEEEcC
Confidence 46799999999887 687643 67777765421 0221100012356889999999884 55 468 8998775
No 118
>1fwx_A Nitrous oxide reductase; beta-propeller domain, cupredoxin domain, CUZ site, CUA site oxidoreductase; 1.60A {Paracoccus denitrificans} SCOP: b.6.1.4 b.69.3.1 PDB: 2iwk_A 2iwf_A
Probab=93.64 E-value=0.21 Score=52.42 Aligned_cols=62 Identities=18% Similarity=0.217 Sum_probs=49.2
Q ss_pred ceEEEEeCCcEEEEEEeEeCC--CceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 012003 217 YQLINVEPGKTYRLRVHNVGI--STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~ 294 (473)
.+.+++++|++++|++.|... ...|.|++.++.+ ...+.||+..++.++++ .+| .||..+
T Consensus 512 pp~I~V~~Gd~V~~~ltN~d~~~Dv~Hgf~ip~~gv----------------~~~i~PG~t~t~~Fta~-~pG-tY~yhC 573 (595)
T 1fwx_A 512 IESFTVKEGDEVTVIVTNLDEIDDLTHGFTMGNYGV----------------AMEIGPQMTSSVTFVAA-NPG-VYWYYC 573 (595)
T ss_dssp CSEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTE----------------EEEECTTCEEEEEEECC-SCE-EEEEEC
T ss_pred CCEEEEECCCEEEEEEEeCCCCCCceeeEEecCCCc----------------ceeeCCCCeEEEEEECC-CCE-EEEEEC
Confidence 488999999999999999653 2257777776532 15789999999999998 478 999988
Q ss_pred ee
Q 012003 295 SP 296 (473)
Q Consensus 295 ~~ 296 (473)
+-
T Consensus 574 ~e 575 (595)
T 1fwx_A 574 QW 575 (595)
T ss_dssp CS
T ss_pred CC
Confidence 63
No 119
>1pcs_A Plastocyanin; electron transport; 2.15A {Synechocystis SP} SCOP: b.6.1.1 PDB: 1m9w_A 1j5c_A 1j5d_A 1jxd_A 1jxf_A
Probab=93.51 E-value=0.068 Score=41.89 Aligned_cols=67 Identities=10% Similarity=0.184 Sum_probs=43.5
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+. ..|.+++++...- +.+ ......+++.+.||+.+++. ++ .+| .|++...
T Consensus 18 P~~i~v~~G~~V~~~--n~~~-~~H~~~~~~~~~p--g~~---~~~~~~~~~~~~pG~~~~~t--f~-~~G-~y~~~C~ 84 (98)
T 1pcs_A 18 PSTVTIKAGEEVKWV--NNKL-SPHNIVFDADGVP--ADT---AAKLSHKGLLFAAGESFTST--FT-EPG-TYTYYCE 84 (98)
T ss_dssp SSEEEECTTCEEEEE--ECSS-CCEEEEECCSSSC--HHH---HHHHCEEEEECSTTCEEEEE--CC-SCE-EEEEECG
T ss_pred CCEEEECCCCEEEEE--ECCC-CCcEEEEeCCCCC--ccc---cccccccccccCCCCEEEEE--cC-CCe-EEEEEcC
Confidence 467999999999886 7653 3577777653211 000 00011357889999998874 45 568 8998775
No 120
>3fsa_A Azurin; copper, cupredoxin fold, metal-binding, protein-protein interaction, metal binding protein; 0.98A {Pseudomonas aeruginosa} SCOP: b.6.1.1 PDB: 2xv2_A 2xv0_A 3fs9_A 2fta_A* 2hx7_A 2hx8_A 2hx9_A 2hxa_A 1cc3_A 2ft6_A 2ft7_A 2ft8_A 1azn_A 3n2j_A 2iwe_A 2ghz_A 2gi0_A 1jzg_A* 1azu_A* 1bex_A ...
Probab=93.44 E-value=0.027 Score=46.49 Aligned_cols=78 Identities=15% Similarity=0.192 Sum_probs=49.6
Q ss_pred ceEEEEeC-CcEEEEEEeEeCCCc----eeEEEEeCc-eeEEEee-------cCceeee----eeeeEEEEcCCceEEEE
Q 012003 217 YQLINVEP-GKTYRLRVHNVGIST----SLNFRIQNH-NLLLVET-------EGSYTVQ----QNYTNMDIHVGQSFSFL 279 (473)
Q Consensus 217 ~~~~~v~~-G~~~rlRliN~~~~~----~~~~~i~gh-~~~via~-------DG~~~~p----~~~d~v~l~pGeR~dv~ 279 (473)
+..|+|++ ||++||.|.|.|... .|.|-|... .+.-++. |-.++++ ....+-.|+|||++++.
T Consensus 17 p~~i~V~~~Ge~V~~~l~N~G~~p~~~M~Hn~Vl~~~~~~~~~~~~~m~~~~~~~y~~~~d~~via~t~~l~pGes~~vt 96 (125)
T 3fsa_A 17 TNAITVDKSCKQFTVNLSHPGNLPKNVMGHNWVLSTAADMQGVVTDGMASGLDKDYLKPDDSRVIAHTKLIGSGEKDSVT 96 (125)
T ss_dssp CSEEEECTTCSEEEEEEECCSSCCHHHHCBCCEEEEHHHHHHHHHHHHHHCGGGTTSCTTCTTCCEECCCBCTTCEEEEE
T ss_pred cCEEEEecCCCEEEEEEEECCcccccccCceEEEcccchHHHHHHHHHhcChhhccCCCCCccceeccceeCCCcEEEEE
Confidence 47899976 999999999999652 455555411 1111111 2233321 22345569999999999
Q ss_pred EEeCC--CCCcceEEEEe
Q 012003 280 VTTDQ--NASSDYYIVAS 295 (473)
Q Consensus 280 v~~~~--~~g~~y~i~~~ 295 (473)
++++. .+| +|.....
T Consensus 97 f~~~~l~~~G-~y~f~C~ 113 (125)
T 3fsa_A 97 FDVSKLKEGE-QYMFFCA 113 (125)
T ss_dssp EEGGGC---C-CEEEECS
T ss_pred EeCcCcCCCc-cEEEEcC
Confidence 99872 467 8988664
No 121
>1bxv_A Plastocyanin; copper protein, electron transfer; 1.80A {Synechococcus elongatus} SCOP: b.6.1.1 PDB: 1bxu_A
Probab=93.10 E-value=0.19 Score=38.48 Aligned_cols=60 Identities=13% Similarity=0.257 Sum_probs=41.6
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+. ..|.+.+++.. +...+...+.||+.+.+.+ + .+| .|++...
T Consensus 18 P~~i~v~~Gd~V~~~--n~~~-~~H~v~~~~~~------------~~~~~~~~~~~g~~~~~~f--~-~~G-~y~~~C~ 77 (91)
T 1bxv_A 18 PSTIEIQAGDTVQWV--NNKL-APHNVVVEGQP------------ELSHKDLAFSPGETFEATF--S-EPG-TYTYYCE 77 (91)
T ss_dssp SSEEEECTTCEEEEE--ECSS-CCEEEEETTCG------------GGCEEEEECSTTCEEEEEC--C-SCE-EEEEECT
T ss_pred CCEEEECCCCEEEEE--ECCC-CCcEEEEeCCC------------ccCcccceeCCCCEEEEEe--C-CCE-EEEEEeC
Confidence 467999999999876 7653 35677666521 1113567889999888754 5 578 8999775
No 122
>2ov0_A Amicyanin; beta-sandwich, electron transport; 0.75A {Paracoccus denitrificans} SCOP: b.6.1.1 PDB: 1aaj_A 1aan_A 1aac_A 1mg2_C* 1mg3_C* 1t5k_A 2gc4_C* 2gc7_C* 2j55_A* 2j56_A* 2j57_A* 2mta_A* 1bxa_A 2rac_A 3l45_A 3ie9_A 3iea_A 2idq_A 2ids_A 1sf3_A ...
Probab=91.93 E-value=0.2 Score=39.82 Aligned_cols=63 Identities=17% Similarity=0.168 Sum_probs=41.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
++.+++++|++++|+ |.... .|.+++++- .||.. ..++-.|.||+++++.+ + .+| .|++....
T Consensus 32 P~~i~v~~Gd~V~~~--N~d~~-~H~v~~~~~------~~g~~----~~~~~~~~pG~~~~~tf--~-~~G-~y~y~C~~ 94 (105)
T 2ov0_A 32 TPELHVKVGDTVTWI--NREAM-PHNVHFVAG------VLGEA----ALKGPMMKKEQAYSLTF--T-EAG-TYDYHCTP 94 (105)
T ss_dssp SSEEEECTTCEEEEE--ECSSS-CBCCEECTT------TSSSS----CEECCCBCTTEEEEEEE--C-SCE-EEEEECSS
T ss_pred CCEEEECCCCEEEEE--ECCCC-CEEEEEcCC------CCCcc----cccccccCCCCEEEEEe--C-CCE-EEEEEeCC
Confidence 478999999998774 87653 566666542 24432 01222478999987655 5 578 99997643
No 123
>1b3i_A PETE protein, protein (plastocyanin); electron transport, type I copper protein, photosynthesis; NMR {Prochlorothrix hollandica} SCOP: b.6.1.1 PDB: 2b3i_A 2jxm_A*
Probab=90.94 E-value=0.16 Score=39.53 Aligned_cols=66 Identities=14% Similarity=0.194 Sum_probs=40.1
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+.. .|.+.+++..+ -+|. .....++..+.||+++++.+ + .+| .|++...
T Consensus 18 P~~i~v~~G~~V~~~--n~~~~-~H~~~~~~~~~----~~~~--~~~~~~~~~~~~g~~~~~tf--~-~~G-~y~y~C~ 83 (97)
T 1b3i_A 18 PKALSISAGDTVEFV--MNKVG-PHNVIFDKVPA----GESA--PALSNTKLAIAPGSFYSVTL--G-TPG-TYSFYCT 83 (97)
T ss_dssp SSEEEECTTCEEEEE--ECSSC-CCCBEEEECCT----TSCH--HHHCBCCCCCSCSCCEEEEC--C-SCS-EEEEECS
T ss_pred CCEEEECCCCEEEEE--ECCCC-CeEEEEeCCCC----cccc--ccccccceecCCCCEEEEEe--C-CCe-EEEEEcc
Confidence 367999999998776 76532 34444433211 0110 00012567789999998854 5 578 8998765
No 124
>1iuz_A Plastocyanin; electron transport; 1.60A {Ulva pertusa} SCOP: b.6.1.1 PDB: 7pcy_A
Probab=90.26 E-value=0.47 Score=37.04 Aligned_cols=68 Identities=13% Similarity=0.121 Sum_probs=41.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+. ..|.+.+....+ -+|........+...+.||+++++.+ + .+| .|++...
T Consensus 17 P~~i~v~~GdtV~~~--n~~~-~~H~v~~~~~~~----p~g~~~~~~~~~~~~~~~g~~~~~tf--~-~~G-~y~y~C~ 84 (98)
T 1iuz_A 17 PSKISVAAGEAIEFV--NNAG-FPHNIVFDEDAV----PAGVDADAISYDDYLNSKGETVVRKL--S-TPG-VYGVYCE 84 (98)
T ss_dssp SSEEEECTTCEEEEE--ECSS-CCEEEEECTTSS----CTTCCHHHHCEEEEECSTTCEEEEEC--C-SCE-EEEEECT
T ss_pred CCEEEECCCCEEEEE--ECCC-CCEEEEEeCCCC----ccccccccccccccccCCCCEEEEEc--C-CCE-EEEEEch
Confidence 478999999998875 7654 355555543110 01211101112357889999988754 5 568 8998764
No 125
>1kdj_A Plastocyanin; electron transfer, photosystem, PAI-PAI stacking; 1.70A {Adiantum capillus-veneris} SCOP: b.6.1.1 PDB: 1kdi_A 2bz7_A 2bzc_A
Probab=89.55 E-value=0.16 Score=40.07 Aligned_cols=65 Identities=17% Similarity=0.198 Sum_probs=40.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCce-------eeee-eeeEEEEcCCceEEEEEEeCCCCCc
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSY-------TVQQ-NYTNMDIHVGQSFSFLVTTDQNASS 288 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~-------~~p~-~~d~v~l~pGeR~dv~v~~~~~~g~ 288 (473)
++.+++++|++++|+ |.+.. .|.+.++ ..++.. ..+. ..+.+.+.|||++++.+ + .+|
T Consensus 16 P~~i~v~~G~tV~~~--n~~~~-~H~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~pG~~~~~tf--~-~~G- 81 (102)
T 1kdj_A 16 PDSITVSAGEAVEFT--LVGET-GHNIVFD-------IPAGAPGTVASELKAASMDENDLLSEDEPSFKAKV--S-TPG- 81 (102)
T ss_dssp SSEEEECTTCCEEEE--ECSSS-CBCCEEC-------CCTTCCHHHHHHHHHTSCCTTCCBBTTBCEEEECC--C-SCE-
T ss_pred CCEEEECCCCEEEEE--ECCCC-CeEEEEe-------CcccccccccchhhcccccccceecCCCCEEEEEe--C-CCe-
Confidence 477999999999875 77643 3444443 223321 0000 12457789999988854 5 578
Q ss_pred ceEEEEe
Q 012003 289 DYYIVAS 295 (473)
Q Consensus 289 ~y~i~~~ 295 (473)
.|++...
T Consensus 82 ~y~y~C~ 88 (102)
T 1kdj_A 82 TYTFYCT 88 (102)
T ss_dssp EEEEECS
T ss_pred EEEEEeC
Confidence 8998765
No 126
>3sbq_A Nitrous-oxide reductase; beta-propeller, cupredoxin domain, copper-contain periplasmic, oxidoreductase; 1.70A {Pseudomonas stutzeri} PDB: 3sbp_A 3sbr_A 1qni_A
Probab=85.09 E-value=2.7 Score=43.59 Aligned_cols=62 Identities=23% Similarity=0.272 Sum_probs=48.5
Q ss_pred ceEEEEeCCcEEEEEEeEeCC--CceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEE
Q 012003 217 YQLINVEPGKTYRLRVHNVGI--STSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVA 294 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~--~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~ 294 (473)
+..++++.|+++||.+.|... .-.|.|.+.++... +.+.||+...+.+++++ +| .|+...
T Consensus 557 P~eI~VP~GdtVrfiLTN~D~veDViHSF~IPslGIK----------------~DaiPGrtnsvtFtadk-PG-vY~y~C 618 (638)
T 3sbq_A 557 VQEFTVKQGDEVTVTITNIDQIEDVSHGFVVVNHGVS----------------MEISPQQTSSITFVADK-PG-LHWYYC 618 (638)
T ss_dssp CCEEEEETTCEEEEEEEECCCSTTCCEEEEETTTTEE----------------EEECTTCEEEEEEECCS-CE-EEEEEC
T ss_pred CCEEEEecCceeEEEEecCCcCCCceeeeEecCCCce----------------eeeCCCCeEEEEEEcCC-CE-EEEEEC
Confidence 467899999999999999742 34677777765432 36889999999999985 68 999977
Q ss_pred ee
Q 012003 295 SP 296 (473)
Q Consensus 295 ~~ 296 (473)
+-
T Consensus 619 SE 620 (638)
T 3sbq_A 619 SW 620 (638)
T ss_dssp CS
T ss_pred CC
Confidence 54
No 127
>2cua_A Protein (CUA); CUA center, electron transport; 1.60A {Thermus thermophilus} SCOP: b.6.1.2 PDB: 2fwl_B*
Probab=83.91 E-value=3.1 Score=34.63 Aligned_cols=59 Identities=17% Similarity=0.353 Sum_probs=44.2
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.++.|+++||++.|.. -.|.|.+.+..+ .+.+.||+.-.+.+++++ +| .|+....-
T Consensus 60 ~~l~Vp~G~~V~~~vts~D--V~Hsf~ip~~~~----------------k~d~~PG~~~~~~~~~~~-~G-~y~~~C~e 118 (135)
T 2cua_A 60 NPIEVPQGAEIVFKITSPD--VIHGFHVEGTNI----------------NVEVLPGEVSTVRYTFKR-PG-EYRIICNQ 118 (135)
T ss_dssp SSEEEETTSEEEEEEEBSS--SCEEEEETTSSC----------------EEEECBTBCEEEEEECCS-CE-EEEEECCS
T ss_pred CEEEEcCCCEEEEEEEeCC--ccceEEecCCCc----------------eeEeCCCCcEEEEEEcCC-CE-EEEEECcc
Confidence 4689999999999998864 356676655432 245678988888999884 68 89887643
No 128
>3c75_A Amicyanin; copper proteins, electron transfer complex, TTQ, electron transport, oxidoreductase, periplasm, transport, metal- binding; HET: TRQ; 2.50A {Paracoccus versutus}
Probab=83.52 E-value=1.1 Score=37.16 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=39.5
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.... .|.+.+.... +|.. ..++-.+.||+++++.+ + .+| .|++...
T Consensus 59 P~~i~V~~GdtV~~~--N~d~~-~H~v~~~~~~------~g~~----~~~s~~l~pG~t~~~tF--~-~~G-~y~y~C~ 120 (132)
T 3c75_A 59 TPEVTIKAGETVYWV--NGEVM-PHNVAFKKGI------VGED----AFRGEMMTKDQAYAITF--N-EAG-SYDYFCT 120 (132)
T ss_dssp SSEEEECTTCEEEEE--ECSSS-CBCCEECTTT------SSSS----CEECCCBCTTEEEEEEE--C-SCE-EEEEECS
T ss_pred CCEEEECCCCEEEEE--ECCCC-ceEEEEeCCC------CCcc----cccccccCCCCEEEEEc--C-CCE-EEEEEeC
Confidence 478999999999875 87643 4555544321 1111 12333578999988765 5 568 8998764
No 129
>1id2_A Amicyanin; beta barrel, type-1 blue copper protein, electron transfer protein, electron transport; 2.15A {Paracoccus versutus} SCOP: b.6.1.1
Probab=83.25 E-value=1.5 Score=34.74 Aligned_cols=62 Identities=13% Similarity=0.213 Sum_probs=38.9
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+.. .|.+.+..... |.. ..++-.|.+|+++++.+ + .+| .|++...
T Consensus 33 P~~i~V~~G~tV~~~--N~d~~-~H~v~~~~~~~------~~~----~~~s~~l~~g~~~~~tf--~-~~G-~y~~~C~ 94 (106)
T 1id2_A 33 TPEVTIKAGETVYWV--NGEVM-PHNVAFKKGIV------GED----AFRGEMMTKDQAYAITF--N-EAG-SYDYFCT 94 (106)
T ss_dssp SSEEEECTTCEEEEE--ECSSS-CBCCEECTTTS------SSS----CEECCCBCTTEEEEEEE--C-SCE-EEEEECS
T ss_pred CCEEEECCCCEEEEE--ECCCC-cEEEEEeCCCC------Ccc----cccccccCCCCEEEEEe--C-CCE-EEEEEeC
Confidence 478999999999876 77643 44444443210 110 12333578999988765 5 568 8988764
No 130
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=82.63 E-value=11 Score=30.56 Aligned_cols=72 Identities=14% Similarity=0.328 Sum_probs=50.9
Q ss_pred CCcEE--EEEEeEeCCCceeEEEEe-CceeEEE--eecCceee--------eeeeeEEEEcCCceEEEEEEeCC--CCCc
Q 012003 224 PGKTY--RLRVHNVGISTSLNFRIQ-NHNLLLV--ETEGSYTV--------QQNYTNMDIHVGQSFSFLVTTDQ--NASS 288 (473)
Q Consensus 224 ~G~~~--rlRliN~~~~~~~~~~i~-gh~~~vi--a~DG~~~~--------p~~~d~v~l~pGeR~dv~v~~~~--~~g~ 288 (473)
.|+.+ .|.+.|.+.. ...+.+. |+.+.++ ..+|..+- .+......|.|||...+-...++ .+|
T Consensus 16 ~g~~v~~~ltv~N~s~~-~v~l~f~Sgq~~Df~v~d~~G~~VwrwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~~~~pG- 93 (120)
T 3isy_A 16 EPEQIKFNMSLKNQSER-AIEFQFSTGQKFELVVYDSEHKERYRYSKEKMFTQAFQNLTLESGETYDFSDVWKEVPEPG- 93 (120)
T ss_dssp CSSCEEEEEEEEECSSS-CEEEEESSSCCEEEEEECTTCCEEEETTTTCCCCCCCEEEEECTTCEEEEEEEESSCCCSE-
T ss_pred CCCeEEEEEEEEcCCCC-cEEEEeCCCCEEEEEEECCCCCEEEEccccchhhhhhceEEECCCCEEEEEEEeCCCCCCc-
Confidence 45544 6778898865 6666764 5654444 44576652 23567899999999999999884 457
Q ss_pred ceEEEEeec
Q 012003 289 DYYIVASPR 297 (473)
Q Consensus 289 ~y~i~~~~~ 297 (473)
.|.+++...
T Consensus 94 ~Ytl~a~l~ 102 (120)
T 3isy_A 94 TYEVKVTFK 102 (120)
T ss_dssp EEEEEEEEC
T ss_pred cEEEEEEEE
Confidence 999988664
No 131
>3erx_A Pseudoazurin; copper protein, high-resolution, E transport, metal-binding, transport; 1.25A {Paracoccus pantotrophus} SCOP: b.6.1.1 PDB: 1adw_A
Probab=78.85 E-value=0.91 Score=37.27 Aligned_cols=74 Identities=14% Similarity=0.298 Sum_probs=43.7
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|++++|.+-|. +|.+...+ +. .|.....+.+.||+.+++-+ + .+| .|+..+..
T Consensus 20 P~~i~V~~GdtV~f~~~~~-----------~H~v~~~~--~~--~P~g~~~f~~~pg~t~s~TF--~-~pG-~y~y~C~~ 80 (123)
T 3erx_A 20 PAFVRAEPGDVINFVPTDK-----------SHNVEAIK--EI--LPEGVESFKSKINESYTLTV--T-EPG-LYGVKCTP 80 (123)
T ss_dssp SSEEEECTTEEEEEEESST-----------TCCCEECT--TS--SCTTCCCCBCCTTCCEEEEE--C-SCE-EEEEECGG
T ss_pred CCEEEECCCCEEEEEECCC-----------CceEEEcC--Cc--CCCCccceecCCCCEEEEEe--C-CCe-EEEEEeCC
Confidence 4779999999999887762 24333221 10 01111234457999887766 5 568 99997753
Q ss_pred cccCCccCCccceEEEEEec
Q 012003 297 RFVNSSEWNKVTGVAILHYS 316 (473)
Q Consensus 297 ~~~~~~~~~~~~~~ail~y~ 316 (473)
- + ...-.+.|.+.
T Consensus 81 H--~-----~~GM~G~I~V~ 93 (123)
T 3erx_A 81 H--F-----GMGMVGLVQVG 93 (123)
T ss_dssp G--T-----TTTCEEEEEES
T ss_pred C--C-----cCCcEEEEEEC
Confidence 1 1 12345666665
No 132
>3s8f_B Cytochrome C oxidase subunit 2; complex IV, respiratory chain, lipid cubic phase, monoolein, peroxide, electron transport, proton pump; HET: HEM HAS OLC; 1.80A {Thermus thermophilus} PDB: 1ehk_B* 2qpd_B* 3qjq_B* 3qjr_B* 3qju_B* 3qjv_B* 1xme_B* 3s8g_B* 4esl_B* 4ev3_B* 4f05_B* 4fa7_B* 4faa_B* 3qjs_B* 3bvd_B* 2qpe_B* 3qjt_B* 3s3b_B* 3s33_B* 3s39_B* ...
Probab=78.38 E-value=5.7 Score=34.33 Aligned_cols=59 Identities=17% Similarity=0.355 Sum_probs=45.5
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.++.|+.+||++-|. .-.|.|.+.+..+ .+.+.||+.-.+.+++++ +| .|+...+-
T Consensus 93 n~l~VP~G~~Vr~~vTS~--DViHsf~IP~lgi----------------k~da~PG~~n~~~~~~~k-pG-~y~g~Cse 151 (168)
T 3s8f_B 93 NPIEVPQGAEIVFKITSP--DVIHGFHVEGTNI----------------NVEVLPGEVSTVRYTFKR-PG-EYRIICNQ 151 (168)
T ss_dssp SSEEEETTSEEEEEEECS--SSCEEEEETTSSC----------------EEEECTTBCEEEEEECCS-CE-EEEEECCS
T ss_pred CEEEEeCCCeEEEEEecC--CceEEEEECCCCe----------------EEEecCCceeEEEEEeCC-CE-EEEEECCc
Confidence 458899999999999986 3468888876543 234668988889999985 68 89987753
No 133
>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}
Probab=77.75 E-value=25 Score=28.45 Aligned_cols=74 Identities=11% Similarity=0.038 Sum_probs=49.1
Q ss_pred ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCC----cccCCCCceEEEEEECC
Q 012003 48 DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTN----CPIPAGWNWTYQFQVKD 123 (473)
Q Consensus 48 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq----~~I~PG~~~~Y~f~~~~ 123 (473)
....+...|-.--.=+|+...|.+..+.|.+.-.+ ..| -|+||-..+| ..|+||++.+|++..++
T Consensus 20 v~~~ltv~N~s~~~v~l~f~Sgq~~Df~v~d~~G~---~Vw--------rwS~~~~FtQa~~~~tl~pGE~~~f~~~w~~ 88 (120)
T 3isy_A 20 IKFNMSLKNQSERAIEFQFSTGQKFELVVYDSEHK---ERY--------RYSKEKMFTQAFQNLTLESGETYDFSDVWKE 88 (120)
T ss_dssp EEEEEEEEECSSSCEEEEESSSCCEEEEEECTTCC---EEE--------ETTTTCCCCCCCEEEEECTTCEEEEEEEESS
T ss_pred EEEEEEEEcCCCCcEEEEeCCCCEEEEEEECCCCC---EEE--------EccccchhhhhhceEEECCCCEEEEEEEeCC
Confidence 44455555655444588888888888888875221 122 2356654433 45899999999999973
Q ss_pred --Cccceeecc
Q 012003 124 --QIGSFFYFP 132 (473)
Q Consensus 124 --~~Gt~wYH~ 132 (473)
.+|+|..+.
T Consensus 89 ~~~pG~Ytl~a 99 (120)
T 3isy_A 89 VPEPGTYEVKV 99 (120)
T ss_dssp CCCSEEEEEEE
T ss_pred CCCCccEEEEE
Confidence 389997663
No 134
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=77.17 E-value=5.2 Score=35.69 Aligned_cols=74 Identities=11% Similarity=-0.051 Sum_probs=52.0
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-hhhhcC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRAA 140 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~ 140 (473)
..|.+..|+.|++.|++. +.-++...-.+.. +.-+-||..-...|.+ +++|+|+..|.- -...-.
T Consensus 41 n~l~lP~g~~V~~~lTS~-DViHSF~IP~lgv------------K~daiPGr~n~l~~~~-~~pG~y~g~CsE~CG~~Hs 106 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSN-SVMHSFFIPRLGS------------QIYAMAGMQTRLHLIA-NEPGTYDGICAEICGPGHS 106 (205)
T ss_dssp SEEEEETTSCEEEEEEES-SSCEEEEEGGGTE------------EEEECTTCCEEEEECC-SSSEEEEEEECSCCSTTST
T ss_pred ceEEEeCCCEEEEEEecC-CceeeEEecccCc------------EEEecCCceEEEEEEe-CCCeEEEEEcccccccchh
Confidence 479999999999999986 4444444333311 2345689888889988 689999999972 122223
Q ss_pred CeeeEEEEE
Q 012003 141 GGYGGIIIN 149 (473)
Q Consensus 141 Gl~G~liV~ 149 (473)
.|.+.++|.
T Consensus 107 ~M~~~v~vv 115 (205)
T 1cyx_A 107 GMKFKAIAT 115 (205)
T ss_dssp TCCEEEEEE
T ss_pred hceEEEEEE
Confidence 578888887
No 135
>1byp_A Protein (plastocyanin); electron transfer, photosynthesis, acidic patch, double mutant, electron transport; 1.75A {Silene latifolia subsp} SCOP: b.6.1.1 PDB: 1pla_A 1plb_A
Probab=75.51 E-value=1.9 Score=33.34 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=24.3
Q ss_pred EEEeecCCcEEEEEEecCCCCCCceeecCCcc
Q 012003 433 SLINGTYKGFMEIIFQNNDTTVQSYHMDGYAF 464 (473)
Q Consensus 433 ~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~F 464 (473)
..+.++.|++|.| .|.+...|.+|+|+..|
T Consensus 17 ~~i~v~~G~tV~~--~n~~~~~H~~~~~~~~~ 46 (99)
T 1byp_A 17 SDLSIASGEKITF--KNNAGFPHNDLFDKKEV 46 (99)
T ss_dssp SEEEECTTEEEEE--EECSSCCBCCEECTTSS
T ss_pred CEEEECCCCEEEE--EECCCCcceEEEeCCCC
Confidence 4578999999877 57777899999998643
No 136
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=74.22 E-value=38 Score=31.31 Aligned_cols=75 Identities=20% Similarity=0.055 Sum_probs=52.0
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~~ 139 (473)
..|.+..|+.|++.+++. +.-++...-.+.. +.-+-||..-...|.+ +++|+|+..|.- +..-
T Consensus 171 n~l~lP~g~~v~~~~tS~-DViHsf~ip~l~~------------k~da~PG~~n~~~~~~-~~~G~y~g~Cse~CG~~H- 235 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGA-DVIHSWTVPAFGV------------KQDAVPGRLAQLWFRA-EREGIFFGQCSELCGISH- 235 (262)
T ss_dssp SCEEEETTSEEEEEEEES-SSCEEEEEGGGTE------------EEEECBTCCEEEEEEC-CSCEEEEECCCSCCSTTG-
T ss_pred ceEEEecCCEEEEEEEEC-cccceeeecccCc------------eEEecCCceeEEEEec-CCcEEEEEEChHhcccCc-
Confidence 469999999999999987 4444444433321 1235688888888988 689999999972 3222
Q ss_pred CCeeeEEEEEcC
Q 012003 140 AGGYGGIIINNR 151 (473)
Q Consensus 140 ~Gl~G~liV~~~ 151 (473)
..|.+.++|.++
T Consensus 236 ~~M~~~v~vv~~ 247 (262)
T 2gsm_B 236 AYMPITVKVVSE 247 (262)
T ss_dssp GGCCEEEEEECH
T ss_pred ccCeEEEEEEcH
Confidence 247777777654
No 137
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=72.54 E-value=37 Score=32.03 Aligned_cols=76 Identities=20% Similarity=-0.032 Sum_probs=52.5
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh-hhhhcC
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL-DFQRAA 140 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~-~~q~~~ 140 (473)
..|.+..|+.|++.+++. +.-++.....+.. +.-+-||..-...|.+ +++|+|+..|.- -...-.
T Consensus 189 N~lvlP~g~~V~~~ltS~-DViHsf~iP~lg~------------k~daiPG~~n~~~~~~-~~~G~y~g~CsE~CG~~Hs 254 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTAT-DVIHAWTIPAFAV------------KQDAVPGRIAQLWFSV-DQEGVYFGQCSELCGINHA 254 (298)
T ss_dssp SCEEEESSSEEEEEEEES-SSCEEEEEGGGTE------------EEEECTTCCEEEEEEC-SSSEEEEECCCSCCSTTTT
T ss_pred ceEEEEcCCEEEEEEEeC-CccceeeEcccCc------------eEEecCCceEEEEEEe-CCCEEEEEEcccccCcCcc
Confidence 579999999999999995 4444444333321 2235688888888988 689999999983 122223
Q ss_pred CeeeEEEEEcC
Q 012003 141 GGYGGIIINNR 151 (473)
Q Consensus 141 Gl~G~liV~~~ 151 (473)
.|.+.+.|.++
T Consensus 255 ~M~~~v~vvs~ 265 (298)
T 3hb3_B 255 YMPIVVKAVSQ 265 (298)
T ss_dssp SCCEEEEEECH
T ss_pred CCeeEEEEEcH
Confidence 57778887764
No 138
>3tu6_A Pseudoazurin (blue copper protein); cupredoxins, beta barrel, electron transfer, redox, electron transport; 2.00A {Sinorhizobium meliloti}
Probab=68.49 E-value=1.6 Score=36.05 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=43.3
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|++++|.+-|. . |.+... ++.. |.....+.+.||+.+++.+ + .+| .|+..+..
T Consensus 22 P~~i~V~~GDtVtf~n~~~----~-------H~v~~~--~~~~--P~g~~~f~s~pGet~s~TF--~-~pG-~y~y~C~~ 82 (127)
T 3tu6_A 22 PAVIRAQPGDTVTFVAKDK----G-------HNSALM--KGGA--PEGAETWKGKINEEITVTL--S-KPG-VYMYQCAP 82 (127)
T ss_dssp SSEEEECTTCEEEEECSSS----S-------CCCEEC--TTCS--CTTCCCCBCCTTCCCEEEC--C-SCE-EEEEECTT
T ss_pred CCEEEECCCCEEEEEECCC----C-------ceEEEc--cCcC--CCCccceecCCCCEEEEEe--C-CCe-EEEEEeCC
Confidence 4789999999998877652 2 443322 1100 1111234446999877655 5 568 99987652
Q ss_pred cccCCccCCccceEEEEEecC
Q 012003 297 RFVNSSEWNKVTGVAILHYSN 317 (473)
Q Consensus 297 ~~~~~~~~~~~~~~ail~y~~ 317 (473)
- ....-.+.|.+..
T Consensus 83 H-------~~~GM~G~I~V~~ 96 (127)
T 3tu6_A 83 H-------VGMGMIGAIVVGE 96 (127)
T ss_dssp T-------GGGTCEEEEEESS
T ss_pred C-------CcCCcEEEEEECc
Confidence 1 1123466666664
No 139
>1paz_A Pseudoazurin precursor; electron transfer(cuproprotein); 1.55A {Alcaligenes faecalis} SCOP: b.6.1.1 PDB: 1pza_A 1pzb_A 1pzc_A 2p80_D 3nyk_A 3paz_A 8paz_A 4paz_A 5paz_A 6paz_A 7paz_A 1py0_A*
Probab=64.62 E-value=3 Score=34.06 Aligned_cols=57 Identities=16% Similarity=0.366 Sum_probs=34.6
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEe---ecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEE
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVE---TEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIV 293 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via---~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~ 293 (473)
+..+++++|++++|..-+. +|.+...+ -||. ..+.+.||+.+.+. ++ .+| .|++.
T Consensus 20 P~~i~V~~GdtV~f~~~~~-----------~H~v~~~~~~~p~~~-------~~~~~~pG~t~~~t--F~-~~G-~y~y~ 77 (123)
T 1paz_A 20 PAYIKANPGDTVTFIPVDK-----------GHNVESIKDMIPEGA-------EKFKSKINENYVLT--VT-QPG-AYLVK 77 (123)
T ss_dssp SSEEEECTTCEEEEEESSS-----------SCCCEECTTCSCTTC-------CCCBCCTTCCEEEE--CC-SCE-EEEEE
T ss_pred CCEEEECCCCEEEEEECCC-----------CeEEEEecccCCCCc-------cceecCCCCEEEEE--eC-CCE-EEEEE
Confidence 4779999999998764442 24443321 0221 12334699987654 45 468 89987
Q ss_pred Ee
Q 012003 294 AS 295 (473)
Q Consensus 294 ~~ 295 (473)
+.
T Consensus 78 C~ 79 (123)
T 1paz_A 78 CT 79 (123)
T ss_dssp CT
T ss_pred eC
Confidence 64
No 140
>1pmy_A Pseudoazurin; electron transfer(cuproprotein); 1.50A {Methylobacterium extorquens} SCOP: b.6.1.1
Probab=62.48 E-value=2.8 Score=34.24 Aligned_cols=74 Identities=19% Similarity=0.261 Sum_probs=41.2
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|++++|..-+ . +|.+... ++.. |.....+.+.||+++.+. ++ .+| .|++.+..
T Consensus 20 P~~i~V~~GdtV~f~n~~--~---------~H~v~~~--~~~~--p~~~~~~~~~pG~t~~~t--F~-~~G-~y~y~C~~ 80 (123)
T 1pmy_A 20 PALVRLKPGDSIKFLPTD--K---------GHNVETI--KGMA--PDGADYVKTTVGQEAVVK--FD-KEG-VYGFKCAP 80 (123)
T ss_dssp SSEEEECTTCEEEEECSS--S---------SCCCEEC--TTSS--CTTCCCCBCCTTSCEEEE--CC-SCE-EEEEECST
T ss_pred CCEEEECCCCEEEEEECC--C---------CcEEEEe--cccC--CCCccceecCCCCEEEEE--eC-CCe-EEEEEeCC
Confidence 477999999998875443 2 2444332 1100 100122345799987655 45 468 89997652
Q ss_pred cccCCccCCccceEEEEEec
Q 012003 297 RFVNSSEWNKVTGVAILHYS 316 (473)
Q Consensus 297 ~~~~~~~~~~~~~~ail~y~ 316 (473)
-+ ...-.+.|...
T Consensus 81 --H~-----~~gM~G~I~V~ 93 (123)
T 1pmy_A 81 --HY-----MMGMVALVVVG 93 (123)
T ss_dssp --TT-----TTTCEEEEEES
T ss_pred --cc-----ccCCEEEEEEc
Confidence 11 12345666665
No 141
>1plc_A Plastocyanin; electron transport; 1.33A {Populus nigra} SCOP: b.6.1.1 PDB: 1pnc_A 1pnd_A 1tkw_A* 2pcy_A 3pcy_A 4pcy_A 5pcy_A 6pcy_A 1jxg_A 1ag6_A 1ylb_B 2pcf_A* 1oow_A 1tef_A 9pcy_A 1teg_A 1byo_A
Probab=62.42 E-value=5.8 Score=30.49 Aligned_cols=30 Identities=13% Similarity=-0.013 Sum_probs=24.2
Q ss_pred eEEEeecCCcEEEEEEecCCCCCCceeecCCc
Q 012003 432 TSLINGTYKGFMEIIFQNNDTTVQSYHMDGYA 463 (473)
Q Consensus 432 ~~~~~~~~g~~Veivl~N~~~~~HP~HLHGh~ 463 (473)
+..+.++.|++|.| .|.+...|-++++...
T Consensus 16 P~~i~v~~G~tV~~--~n~~~~~H~v~~~~~~ 45 (99)
T 1plc_A 16 PSEFSISPGEKIVF--KNNAGFPHNIVFDEDS 45 (99)
T ss_dssp SSEEEECTTCEEEE--EECSSCCBCCEECTTS
T ss_pred CCEEEECCCCEEEE--EECCCCceEEEEeCCC
Confidence 34678999999987 6777789999999753
No 142
>1v54_B Cytochrome C oxidase polypeptide II; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: b.6.1.2 f.17.2.1 PDB: 1oco_B* 1occ_B* 1ocz_B* 1ocr_B* 1v55_B* 2dyr_B* 2dys_B* 2eij_B* 2eik_B* 2eil_B* 2eim_B* 2ein_B* 2occ_B* 2y69_B* 2ybb_M* 2zxw_B* 3abk_B* 3abl_B* 3abm_B* 3ag1_B* ...
Probab=62.22 E-value=67 Score=28.94 Aligned_cols=74 Identities=8% Similarity=-0.126 Sum_probs=50.7
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--h-hhh
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--D-FQR 138 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~-~q~ 138 (473)
..+.+..|..|++.++.. +.-++...-.+.. .+| .-||..-...|++ +++|+|+..|.- | .|.
T Consensus 140 n~lvlP~~~~Vr~~vtS~-DViHsf~vP~lg~----K~D--------aiPGr~n~~~~~~-~~~G~y~g~Cse~CG~~Hs 205 (227)
T 1v54_B 140 NRVVLPMEMTIRMLVSSE-DVLHSWAVPSLGL----KTD--------AIPGRLNQTTLMS-SRPGLYYGQCSEICGSNHS 205 (227)
T ss_dssp SCEEEETTSCEEEEEEES-SSCEEEEEGGGTE----EEE--------ECTTCCEEEEECC-SSCEEEEECCCSCCSTTGG
T ss_pred ceEEEecCCEEEEEEEeC-cccceeeecccCc----EEE--------ecCCceEEEEEec-CCcEEEEEEehhhcccccc
Confidence 679999999999999985 4444444443322 133 4578888888887 689999999972 3 233
Q ss_pred cCCeeeEEEEEcC
Q 012003 139 AAGGYGGIIINNR 151 (473)
Q Consensus 139 ~~Gl~G~liV~~~ 151 (473)
-|.+.+.+.++
T Consensus 206 --~M~~~v~vv~~ 216 (227)
T 1v54_B 206 --FMPIVLELVPL 216 (227)
T ss_dssp --GCCEEEEEECH
T ss_pred --cCeEEEEEEcH
Confidence 36666666653
No 143
>2ux6_A Pseudoazurin; type-1 copper, metal-binding, redox potential, copper, transport, cupredoxin, periplasmic, electron transport; 1.3A {Achromobacter cycloclastes} PDB: 2ux7_A 2uxf_A 2uxg_A 1bqk_A 1bqr_A 1zia_A 1zib_A 2jkw_A
Probab=61.18 E-value=4.8 Score=32.74 Aligned_cols=60 Identities=13% Similarity=0.253 Sum_probs=35.2
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEe
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVAS 295 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~ 295 (473)
+..+++++|++++|+ |.+. . |.+.+.. |. + |.....+.+.+|+.+.+-+ + .+| .|++.+.
T Consensus 20 P~~i~V~~GdtV~f~--n~d~--~-------H~v~~~~--~~-~-p~~~~~~~~~~g~t~~~tF--~-~~G-~y~y~C~ 79 (122)
T 2ux6_A 20 PASLKVAPGDTVTFI--PTDK--G-------HNVETIK--GM-I-PDGAEAFKSKINENYKVTF--T-APG-VYGVKCT 79 (122)
T ss_dssp SSEEEECTTEEEEEE--ESSS--S-------CCCEECT--TC-S-CTTCCCCBCCTTCCEEEEE--C-SCE-EEEEEET
T ss_pred CCEEEECCCCEEEEE--ECCC--C-------cEEEEcc--cc-c-CCCcceeecCCCCEEEEEe--C-CCE-EEEEEeC
Confidence 477999999998886 4432 2 4433321 10 0 1001223456899877655 5 468 8998764
No 144
>2r39_A FIXG-related protein; structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, iron, iron-sulfur; 2.02A {Vibrio parahaemolyticus}
Probab=59.68 E-value=27 Score=27.90 Aligned_cols=47 Identities=19% Similarity=0.384 Sum_probs=31.2
Q ss_pred cEEEEEEeEeCCC-ceeEEEEeCce-eEEEeecCceeeeeeeeEEEEcCCceEEEEEEe
Q 012003 226 KTYRLRVHNVGIS-TSLNFRIQNHN-LLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTT 282 (473)
Q Consensus 226 ~~~rlRliN~~~~-~~~~~~i~gh~-~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~ 282 (473)
-.|+|||+|.+.. ..+.+++.|.. ++++ | + ..+.+.|||..++-|..
T Consensus 33 N~Ytlki~Nkt~~~~~~~l~v~g~~~l~~~---g----~---~~i~v~~g~~~~~~v~v 81 (118)
T 2r39_A 33 NTYTLKVINKTQQVQEYNLDVKGLNDVSWY---G----K---QTIQVEPGEVLNLPMSL 81 (118)
T ss_dssp EEEEEEEEECSSSCEEEEEEEESCSSCEEE---S----C---CEEEECTTCEEEEEEEE
T ss_pred EEEEEEEEECCCCCEEEEEEEeCCcccEEe---C----C---CcEEECCCCEEEEEEEE
Confidence 3589999999865 45667777742 3322 2 1 14889999977766543
No 145
>3ef4_A Pseudoazurin, blue copper protein; electron transfer, electron transport; HET: PO4; 1.18A {Hyphomicrobium denitrificans} SCOP: b.6.1.0
Probab=56.80 E-value=4.2 Score=33.27 Aligned_cols=74 Identities=14% Similarity=0.204 Sum_probs=42.4
Q ss_pred ceEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 217 YQLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 217 ~~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
+..+++++|++++|..-+ ..|.+..+ |+.. |...+.+.+.||+.+++-+ + .+| .|+..+..
T Consensus 21 P~~i~V~~GDTV~f~n~~----~~Hnv~~~---------~~~~--p~g~~~~~~~pg~t~s~TF--~-~~G-~y~Y~C~~ 81 (124)
T 3ef4_A 21 PGFVKVEAGDTVKFVPTD----KSHNAESV---------REVW--PEGVAPVKGGFSKEVVFNA--E-KEG-LYVLKCAP 81 (124)
T ss_dssp SSEEEECTTCEEEEECSS----SSCCCEEC---------TTTS--CTTSCCCBCCTTCCEEEEC--C-SSE-EEEEECTT
T ss_pred CCEEEECCCCEEEEEECC----CCccEEEe---------CCcC--CCCccccccCCCCEEEEEe--C-CCe-EEEEEcCC
Confidence 478999999998776443 23333332 2211 1112334567999887765 5 568 99997642
Q ss_pred cccCCccCCccceEEEEEec
Q 012003 297 RFVNSSEWNKVTGVAILHYS 316 (473)
Q Consensus 297 ~~~~~~~~~~~~~~ail~y~ 316 (473)
- ....-.+.|.+.
T Consensus 82 H-------~~~GM~G~I~V~ 94 (124)
T 3ef4_A 82 H-------YGMGMVVLVQVG 94 (124)
T ss_dssp T-------GGGTCEEEEEES
T ss_pred C-------CcCCCEEEEEEC
Confidence 1 112345666665
No 146
>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}
Probab=55.87 E-value=7.2 Score=31.99 Aligned_cols=47 Identities=17% Similarity=0.252 Sum_probs=29.5
Q ss_pred EEEEEECCCCCc---eeeeCCCCCCC---CCCCCCCCCCCcccCCCCceEEEE
Q 012003 73 VVNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQF 119 (473)
Q Consensus 73 ~v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f 119 (473)
+|++.|..+.+. +=||.=.+..+ .-..+||-|.|.-|.||++|+|.=
T Consensus 34 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtS 86 (127)
T 2f1e_A 34 SIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEAFHYTS 86 (127)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEECTTCEEEEEE
T ss_pred EEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEeC
Confidence 477778766553 45776332211 112577777777899999988854
No 147
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=52.94 E-value=7.4 Score=31.88 Aligned_cols=48 Identities=23% Similarity=0.268 Sum_probs=29.7
Q ss_pred EEEEEECCCCCc---eeeeCCCCCCC---CCCCCCCCCCCcccCCCCceEEEEE
Q 012003 73 VVNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 73 ~v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~ 120 (473)
+|++.|....+. +=||.=.+..+ .-..+||-|.|.-|.||++|.|.=-
T Consensus 33 ~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~YtSg 86 (126)
T 1xvs_A 33 LITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSG 86 (126)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEEEEEEE
T ss_pred EEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCceEEeCC
Confidence 477778766553 45776332211 1125677677778999999888543
No 148
>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1
Probab=51.26 E-value=9.9 Score=31.67 Aligned_cols=49 Identities=18% Similarity=0.258 Sum_probs=30.1
Q ss_pred EEEEEECCCCCc---eeeeCCCCCCC---CCCCCCCCCCCcccCCCCceEEEEEE
Q 012003 73 VVNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQFQV 121 (473)
Q Consensus 73 ~v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~~ 121 (473)
.|++.|....+. +=||.=.+..+ .-..+||-|.|.-|.||++|.|.=-.
T Consensus 38 ~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PGe~F~YtSg~ 92 (139)
T 1xq4_A 38 TVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGC 92 (139)
T ss_dssp EEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCCCceEEcCCc
Confidence 467777766553 45676332211 11257777777789999998885433
No 149
>1cyx_A CYOA; electron transport; 2.30A {Escherichia coli} SCOP: b.6.1.2 PDB: 1cyw_A
Probab=50.22 E-value=47 Score=29.50 Aligned_cols=60 Identities=10% Similarity=0.105 Sum_probs=43.7
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEeec
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASPR 297 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~~ 297 (473)
..+.+..|+.+||+|.+... .|.|.|.....+ +..-||..-.+-+.++ .+| .|+.+.+-.
T Consensus 41 n~l~lP~g~~V~~~lTS~DV--iHSF~IP~lgvK----------------~daiPGr~n~l~~~~~-~pG-~y~g~CsE~ 100 (205)
T 1cyx_A 41 NEIAFPANTPVYFKVTSNSV--MHSFFIPRLGSQ----------------IYAMAGMQTRLHLIAN-EPG-TYDGICAEI 100 (205)
T ss_dssp SEEEEETTSCEEEEEEESSS--CEEEEEGGGTEE----------------EEECTTCCEEEEECCS-SSE-EEEEEECSC
T ss_pred ceEEEeCCCEEEEEEecCCc--eeeEEecccCcE----------------EEecCCceEEEEEEeC-CCe-EEEEEcccc
Confidence 56899999999999998653 577888766543 3344676667777777 468 899887543
No 150
>2p9r_A Alpha-2-M, alpha-2-macroglobulin; human alpha2-macroglobulin, Mg2 domain, X-RAY, signaling protein; 2.30A {Homo sapiens}
Probab=47.94 E-value=18 Score=27.85 Aligned_cols=70 Identities=16% Similarity=0.164 Sum_probs=38.2
Q ss_pred EeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCC--CCcceEEEEee
Q 012003 222 VEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQN--ASSDYYIVASP 296 (473)
Q Consensus 222 v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~--~g~~y~i~~~~ 296 (473)
-+|||++++|++-.... .....-.-..+++..-+|..+... .........++.-+.+++. .| +|.|++..
T Consensus 13 YrPGetV~~~~~~~~~~-~~p~~~~~~~v~l~dp~g~~v~~~---~~~~~~~G~~~~~f~Lp~~~~~G-~y~i~~~~ 84 (102)
T 2p9r_A 13 YKPGQTVKFRVVSMDEN-FHPLNELIPLVYIQDPKGNRIAQW---QSFQLEGGLKQFSFPLSSEPFQG-SYKVVVQK 84 (102)
T ss_dssp ECTTCEEEEEEEEECGG-GCBCCCEEEEEEEECTTSCEEEEE---EEEECBTTEEEEEEECCSSCCCE-EEEEEEEC
T ss_pred cCCCCEEEEEEEEECCC-CcCCCCCceEEEEECCCCCEEEEE---EeecCCCCEEEEEEECCCCCCCe-eEEEEEEE
Confidence 57999999998866432 111100001455666677654321 1222234456666666543 46 89998865
No 151
>1x9u_A Umecyanin; cupredoxin, phytocyanin, copper binding site, beta barrel, electron transport; 1.80A {Armoracia rusticana} PDB: 1x9r_A
Probab=47.82 E-value=15 Score=29.55 Aligned_cols=35 Identities=11% Similarity=0.243 Sum_probs=28.6
Q ss_pred EEEEECCCccceeeccChhhhhcCCeeeEE-EEEcCC
Q 012003 117 YQFQVKDQIGSFFYFPSLDFQRAAGGYGGI-IINNRD 152 (473)
Q Consensus 117 Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~l-iV~~~~ 152 (473)
..+++ +.+|++||-|-...|=..||...| .|....
T Consensus 72 ~~v~l-~~~G~~yFic~~~~HC~~Gmkl~In~V~~~~ 107 (116)
T 1x9u_A 72 VKIML-NTTGPQYYICTVGDHCRVGQKLSINVVGAGG 107 (116)
T ss_dssp EEEEC-CSCEEEEEECCSTTTTTTTCEEEEEEECC--
T ss_pred eEEEE-CCCCCEEEECCCCCccccCCEEEEEEECCCC
Confidence 56777 479999999998888889999999 887654
No 152
>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1
Probab=46.33 E-value=8.7 Score=31.81 Aligned_cols=48 Identities=17% Similarity=0.239 Sum_probs=29.3
Q ss_pred EEEEEECCCCCc---eeeeCCCCCCC---CCCCCCCCCCCcccCCCCceEEEEE
Q 012003 73 VVNVKNDLDEPL---LLTWNGVQHRK---NSWQDGVLGTNCPIPAGWNWTYQFQ 120 (473)
Q Consensus 73 ~v~v~N~l~~~~---siH~HG~~~~~---~~~~DGv~~tq~~I~PG~~~~Y~f~ 120 (473)
.|++.|..+.+. +=||.=.+..+ .-..+||-|.|.-|.||++|+|.=-
T Consensus 33 ~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F~YtSg 86 (134)
T 1tza_A 33 TITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSG 86 (134)
T ss_dssp EEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEEEEEE
T ss_pred EEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCceEEcCC
Confidence 466777766543 44665332111 1125777677778999999888543
No 153
>1xwv_A DER F II; beta sheets, allergen; HET: PE3 XPE; 1.83A {Dermatophagoides farinae} SCOP: b.1.18.7 PDB: 1ahk_A 1ahm_A 1wrf_A 2f08_A* 1a9v_A 1ktj_A
Probab=43.47 E-value=28 Score=28.33 Aligned_cols=62 Identities=8% Similarity=0.148 Sum_probs=34.7
Q ss_pred CceEEEecCCEEEEEEEECCCC---C--ceee--eCCCCCCC-CCCCCCCCCCCcccCCCCceEEEEEEC
Q 012003 61 GPILNVTTNWNVVVNVKNDLDE---P--LLLT--WNGVQHRK-NSWQDGVLGTNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~---~--~siH--~HG~~~~~-~~~~DGv~~tq~~I~PG~~~~Y~f~~~ 122 (473)
.+.=.++.|..+.+.+.=..+. . +.+| ..|+...- ....|+=-++.|||.+|+.++|.+..+
T Consensus 24 ~~pC~l~rG~~~~i~~~f~~~~~~~~l~~~v~~~~~g~~ip~p~~~~daC~~~~CPl~~G~~~~y~~~~~ 93 (129)
T 1xwv_A 24 SDPCIIHRGKPFTLEALFDANQNTKTAKIEIKASLDGLEIDVPGIDTNACHFMKCPLVKGQQYDAKYTWN 93 (129)
T ss_dssp TSCEEEETTSEEEEEEEEECCSCBSCCEEEEEEEETTEEECCCSCCCBGGGTSCSSBCTTCEEEEEEEEE
T ss_pred CCCCEEeCCCeEEEEEEEECCCccceEEEEEEEEEcCEEeecCCCCCCccCCccCcccCCEEEEEEEEeE
Confidence 3455677788887777622211 1 2233 23443321 111222222679999999999998775
No 154
>1nep_A EPV20, BNPC2, epididymal secretory protein E1; niemann-PICK C2, LDL, cholesterol, lipid bindin; HET: NAG; 1.70A {Bos taurus} SCOP: b.1.18.7 PDB: 2hka_A*
Probab=43.28 E-value=25 Score=28.68 Aligned_cols=61 Identities=20% Similarity=0.259 Sum_probs=34.1
Q ss_pred ceEEEecCCEEEEEEE---ECCCCCce--ee--eCCCCCC-CCCCCCCCC-CCCcccCCCCceEEEEEEC
Q 012003 62 PILNVTTNWNVVVNVK---NDLDEPLL--LT--WNGVQHR-KNSWQDGVL-GTNCPIPAGWNWTYQFQVK 122 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~---N~l~~~~s--iH--~HG~~~~-~~~~~DGv~-~tq~~I~PG~~~~Y~f~~~ 122 (473)
+.=.++.|..+.+.+. |.-..... +| ..|+... ..+..|+=. ++.|||.+|+.++|.+.++
T Consensus 26 ~PC~l~rG~~~~i~i~f~~~~~~~~~~~~v~~~~~gv~vp~~~~~~daC~~g~~CPl~~G~~~~y~~~lp 95 (130)
T 1nep_A 26 QPCKLHRGQSYSVNVTFTSNTQSQSSKAVVHGIVMGIPVPFPIPESDGCKSGIRCPIEKDKTYNYVNKLP 95 (130)
T ss_dssp SSEEEETTCEEEEEEEEEESSCBSCCEEEEEEEETTEEEECCCSCCBGGGTTCCSSBCTTCEEEEEEEEE
T ss_pred CCCEEEcCCeEEEEEEEEcccccceEEEEEEEEECCEEeeccCCCCCcccCCCcCcccCCcEEEEEEEeE
Confidence 4556677887777776 22111112 22 1233321 111234332 2679999999999998876
No 155
>1yew_A Particulate methane monooxygenase, B subunit; membrane protein, beta barrel, oxidoreductase; 2.80A {Methylococcus capsulatus} PDB: 3rgb_A
Probab=41.93 E-value=63 Score=31.15 Aligned_cols=69 Identities=16% Similarity=0.318 Sum_probs=39.6
Q ss_pred eEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCc--------eeeeCCCCC--CCCCCCC------CCCC-CCcccCC
Q 012003 49 KQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPL--------LLTWNGVQH--RKNSWQD------GVLG-TNCPIPA 111 (473)
Q Consensus 49 ~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~--------siH~HG~~~--~~~~~~D------Gv~~-tq~~I~P 111 (473)
..++-.-+=++||-+++++ ++|+|+.+.+. +++|-.-.+ ..+..-| |..+ ...||+|
T Consensus 251 ~~~v~~A~Y~vpgR~l~~~------~~VtN~g~~pvrlgeF~tA~vrFln~~~~~~~~~~P~~lla~~gL~vsd~~pI~P 324 (382)
T 1yew_A 251 SVKVEDATYRVPGRAMRMK------LTITNHGNSPIRLGEFYTASVRFLDSDVYKDTTGYPEDLLAEDGLSVSDNSPLAP 324 (382)
T ss_dssp EEEEEEEEEESSCSEEEEE------EEEEECSSSCEEEEEEECSSCEEECTTTCCCCSCCCGGGEETTCEEESCCSCBCT
T ss_pred EEEeeccEEecCCcEEEEE------EEEEcCCCCceEeeeEEeccEEEeCCcccccCCCChHHhhccCCceeCCCCCcCC
Confidence 3344444446777777654 78888876543 344433211 1111111 3223 3578999
Q ss_pred CCceEEEEEECC
Q 012003 112 GWNWTYQFQVKD 123 (473)
Q Consensus 112 G~~~~Y~f~~~~ 123 (473)
||+.+.+.++.|
T Consensus 325 GETr~~~v~a~d 336 (382)
T 1yew_A 325 GETRTVDVTASD 336 (382)
T ss_dssp TCEEEEEEEEEC
T ss_pred CceeEEEEEeeh
Confidence 999999999854
No 156
>3rfr_A PMOB; membrane, oxidoreductase; 2.68A {Methylocystis SP} PDB: 3chx_A
Probab=41.27 E-value=83 Score=30.70 Aligned_cols=69 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred ceEEEEEEcCCCCCceEEEecCCEEEEEEEECCCCCce---eeeCCCCCCCCCC-------------CCCCCCCCcccCC
Q 012003 48 DKQQVIGINGQFPGPILNVTTNWNVVVNVKNDLDEPLL---LTWNGVQHRKNSW-------------QDGVLGTNCPIPA 111 (473)
Q Consensus 48 ~~~~~~~~Ng~~pgP~i~v~~Gd~v~v~v~N~l~~~~s---iH~HG~~~~~~~~-------------~DGv~~tq~~I~P 111 (473)
+..++-.-+=++||-+++++ ++|+|+.+++.. .-.-|+++..... .+|.. +..||+|
T Consensus 284 V~~~v~~A~Y~vpgR~l~~~------~~VtN~g~~pvrlgeF~tA~vrFlnp~v~~~~~~~p~~l~a~~GL~-s~~pI~P 356 (419)
T 3rfr_A 284 VTTELNGGVYKVPGRELTIN------VKVKNGTSQPVRLGEYTAAGLRFLNPTVFTQKPDFPDYLLADRGLS-NDDVIAP 356 (419)
T ss_dssp CEEEEEEEEEESSSSEEEEE------EEEECCSSSCBEEEEEECSSCEEECTTTCSSCCCCCTTTEESCCCC-CCCCBCT
T ss_pred eEEEEeceEEecCCcEEEEE------EEEecCCCCceEEeeEEEccEEEeCcccccCCCCCchhhhhccCCC-CCCCcCC
Q ss_pred CCceEEEEEECC
Q 012003 112 GWNWTYQFQVKD 123 (473)
Q Consensus 112 G~~~~Y~f~~~~ 123 (473)
||+.+.+..+.|
T Consensus 357 GETrt~~V~a~d 368 (419)
T 3rfr_A 357 GESKEIVVKIQD 368 (419)
T ss_dssp TCEEEEEEEEEC
T ss_pred CcceEEEEEeeh
No 157
>2h7w_A Chagasin; beta-strands, immunoglobulin-fold, hydrolase inhibitor; 1.70A {Trypanosoma cruzi} SCOP: b.1.26.1 PDB: 2nnr_A 2oul_B 3cbj_B 3cbk_B 3e1z_A 2fo8_A 2nqd_A*
Probab=41.14 E-value=1.1e+02 Score=24.91 Aligned_cols=65 Identities=18% Similarity=0.207 Sum_probs=37.2
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCC--------CCCCcccCCCCceEEEEEECCCccce
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGV--------LGTNCPIPAGWNWTYQFQVKDQIGSF 128 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv--------~~tq~~I~PG~~~~Y~f~~~~~~Gt~ 128 (473)
|-+|.++.||++.|.|.-+-..+.+-..... ....-.|++ |.....+..|+...+.|++. ++|+.
T Consensus 32 ~~~I~v~~Ge~~~I~L~~NPTTGY~W~~~~~--~~~~L~~~~~~v~~~y~p~~~~~vGagG~~~w~f~A~-~~G~~ 104 (131)
T 2h7w_A 32 GATLTVAVGELVEIQLPSNPTTGFAWYFEGG--TKESPNESMFTVENKYFPPDSKLLGAGGTEHFHVTVK-AAGTH 104 (131)
T ss_dssp TCEEEECTTCEEEEEEEECGGGSCEEEBTTT--BSSCSCTTTEEEEEEEECCTTCCTTCCEEEEEEEEEC-SSEEE
T ss_pred CCEEEEeCCCEEEEEeCCCCCCCeEEEEecC--CCccccccceeecceeeeCCCCCcCCCcEEEEEEEEc-cCceE
Confidence 5699999999999999866333222222221 111112222 11112355677888888885 68864
No 158
>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}
Probab=40.00 E-value=24 Score=27.55 Aligned_cols=52 Identities=17% Similarity=0.085 Sum_probs=33.6
Q ss_pred EEEEEEEECCCCC---ceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEEC-CCccc
Q 012003 71 NVVVNVKNDLDEP---LLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVK-DQIGS 127 (473)
Q Consensus 71 ~v~v~v~N~l~~~---~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~-~~~Gt 127 (473)
.++|+++|-|+.+ ..++..|.-. .++--..-..|+||++.++++... ..+|.
T Consensus 23 ~v~vsf~NPL~~~L~~c~~~vEG~GL-----~~~~~~~~~~v~pg~~~~~~~~~~P~~~G~ 78 (102)
T 2xzz_A 23 EVQIVFKNPLPVTLTNVVFRLEGSGL-----QRPKILNVGDIGGNETVTLRQSFVPVRPGP 78 (102)
T ss_dssp EEEEEEECCSSSCBCSEEEEEEETTT-----EEEEEEEECCBCTTCEEEEEEEECCCSCSS
T ss_pred EEEEEEECCCCCcccCEEEEEECCCC-----CcceEEEcCcCCCCCEEEEEEEEecCcccc
Confidence 4678889999854 4567666532 122111224699999999988873 44665
No 159
>1ws8_A Mavicyanin; oxidized form, phytocyanin, cupredoxin, electron transport; 1.60A {Cucurbita pepo} SCOP: b.6.1.1 PDB: 1ws7_A
Probab=34.24 E-value=31 Score=27.24 Aligned_cols=35 Identities=11% Similarity=0.228 Sum_probs=28.8
Q ss_pred EEEEEECCCccceeeccChhhhhcCCeeeEEEEEcC
Q 012003 116 TYQFQVKDQIGSFFYFPSLDFQRAAGGYGGIIINNR 151 (473)
Q Consensus 116 ~Y~f~~~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~ 151 (473)
...|++ +.+|++||-|-...|=..||...|.|...
T Consensus 71 ~~~v~L-~~~G~~yFic~~~gHC~~GmKl~I~V~~~ 105 (109)
T 1ws8_A 71 ADSIPL-KRPGTFYFLCGIPGHCQLGQKVEIKVDPG 105 (109)
T ss_dssp EEEEEC-CSSEEEEEECCSTTTTTTTCEEEEEECC-
T ss_pred CEEEEE-CCCcCEEEECCCCCcccCCCEEEEEEcCC
Confidence 346777 57999999999888888999999988654
No 160
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=31.45 E-value=18 Score=29.56 Aligned_cols=19 Identities=26% Similarity=0.415 Sum_probs=16.6
Q ss_pred eEEEEeCCcEEEEEEeEeC
Q 012003 218 QLINVEPGKTYRLRVHNVG 236 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~ 236 (473)
-.++|+.||++||.+.|-+
T Consensus 71 k~InV~~GETVrF~v~nkt 89 (131)
T 2wtp_A 71 RYVNVDSGETVAFRAGEKI 89 (131)
T ss_dssp CEEEEETTCEEEEEETTEE
T ss_pred eEEEecCCCEEEEEeCCcE
Confidence 4499999999999999865
No 161
>2gsm_B Cytochrome C oxidase subunit 2; transmembrane protein complex, oxidoreductase; HET: DMU HEA TRD; 2.00A {Rhodobacter sphaeroides} SCOP: b.6.1.2 f.17.2.1 PDB: 3dtu_B* 3fye_B* 3fyi_B* 3omi_B* 3om3_B* 3oma_B* 3omn_B* 1m56_B* 1m57_B*
Probab=30.20 E-value=1.2e+02 Score=27.86 Aligned_cols=59 Identities=12% Similarity=0.142 Sum_probs=42.4
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.++.|+.+||++-+.. -.|.|.+.+...++ ..-||..-.+-+.+++ +| .|+.+++-
T Consensus 171 n~l~lP~g~~v~~~~tS~D--ViHsf~ip~l~~k~----------------da~PG~~n~~~~~~~~-~G-~y~g~Cse 229 (262)
T 2gsm_B 171 TAMVVPVNKTVVVQVTGAD--VIHSWTVPAFGVKQ----------------DAVPGRLAQLWFRAER-EG-IFFGQCSE 229 (262)
T ss_dssp SCEEEETTSEEEEEEEESS--SCEEEEEGGGTEEE----------------EECBTCCEEEEEECCS-CE-EEEECCCS
T ss_pred ceEEEecCCEEEEEEEECc--ccceeeecccCceE----------------EecCCceeEEEEecCC-cE-EEEEEChH
Confidence 4589999999999999865 35788887665443 3446666677777774 67 88886643
No 162
>1jer_A Cucumber stellacyanin; electron transport, copper, glycoprotein, hydroxylation; 1.60A {Cucumis sativus} SCOP: b.6.1.1
Probab=27.90 E-value=67 Score=26.53 Aligned_cols=35 Identities=9% Similarity=0.197 Sum_probs=28.9
Q ss_pred EEEE-CCCccceeeccChhhhhcCCeeeEEEEEcCCC
Q 012003 118 QFQV-KDQIGSFFYFPSLDFQRAAGGYGGIIINNRDV 153 (473)
Q Consensus 118 ~f~~-~~~~Gt~wYH~H~~~q~~~Gl~G~liV~~~~~ 153 (473)
.|++ . .+|++||-|-...|=..||...|.|.....
T Consensus 76 ~v~L~~-~~G~~YFicg~~gHC~~GmKl~I~V~~~~~ 111 (138)
T 1jer_A 76 VIERLD-ELGMHYFVCTVGTHCSNGQKLSINVVAANA 111 (138)
T ss_dssp EEEECC-SSEEEEEECCSTTTGGGTCEEEEEEECCC-
T ss_pred EEEecc-CCcCEEEEcCCCCccccCCEEEEEEcCCCC
Confidence 5666 4 699999999988888899999999986543
No 163
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=25.41 E-value=1.6e+02 Score=27.66 Aligned_cols=59 Identities=19% Similarity=0.220 Sum_probs=43.2
Q ss_pred eEEEEeCCcEEEEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCCCCCcceEEEEee
Q 012003 218 QLINVEPGKTYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQNASSDYYIVASP 296 (473)
Q Consensus 218 ~~~~v~~G~~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~~~g~~y~i~~~~ 296 (473)
..+.++.|+.+||++-+... .|.|.+.....+ +..-||..-.+-+.+++ +| .|+.+++-
T Consensus 189 N~lvlP~g~~V~~~ltS~DV--iHsf~iP~lg~k----------------~daiPG~~n~~~~~~~~-~G-~y~g~CsE 247 (298)
T 3hb3_B 189 NPVVVPVGKKVLVQVTATDV--IHAWTIPAFAVK----------------QDAVPGRIAQLWFSVDQ-EG-VYFGQCSE 247 (298)
T ss_dssp SCEEEESSSEEEEEEEESSS--CEEEEEGGGTEE----------------EEECTTCCEEEEEECSS-SE-EEEECCCS
T ss_pred ceEEEEcCCEEEEEEEeCCc--cceeeEcccCce----------------EEecCCceEEEEEEeCC-CE-EEEEEccc
Confidence 56899999999999998653 578888766544 23446777777787884 67 88886643
No 164
>1fft_B Ubiquinol oxidase; electron transport, cytochrome oxidase, membrane protein, oxidoreductase; HET: HEM HEO; 3.50A {Escherichia coli} SCOP: b.6.1.2 f.17.2.1
Probab=25.37 E-value=43 Score=31.92 Aligned_cols=73 Identities=11% Similarity=-0.023 Sum_probs=49.7
Q ss_pred ceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCCCCcccCCCCceEEEEEECCCccceeeccCh--hhhhc
Q 012003 62 PILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLGTNCPIPAGWNWTYQFQVKDQIGSFFYFPSL--DFQRA 139 (473)
Q Consensus 62 P~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~tq~~I~PG~~~~Y~f~~~~~~Gt~wYH~H~--~~q~~ 139 (473)
..|.+..|..|++.++.. +.-++...-.+.. +.-+-||..-...|.+ +++|+|+..|.- +.. -
T Consensus 151 n~l~lP~g~~V~~~lTS~-DViHsf~IP~lg~------------k~DaiPGr~n~~~~~~-~~~G~y~g~CsE~CG~~-H 215 (315)
T 1fft_B 151 NEIAFPANTPVYFKVTSN-SVMNSFFIPRLGS------------QIYAMAGMQTRLHLIA-NEPGTYDGISASYSGPG-F 215 (315)
T ss_dssp SBCCCCSSSEEEEEECBS-SSCEEEEEGGGTE------------EEEECBTSCEEEEEEC-CSCBCCEEBCCSCCSTT-T
T ss_pred ceEEEeCCCEEEEEEEeC-CccceeeecccCc------------EEeecCCcceeeEEec-CCCeEEEEeccccchhh-H
Confidence 468889999999999876 4444444443321 2335688888888988 689999999972 322 2
Q ss_pred CCeeeEEEEE
Q 012003 140 AGGYGGIIIN 149 (473)
Q Consensus 140 ~Gl~G~liV~ 149 (473)
..|.+.++|.
T Consensus 216 s~M~~~v~vv 225 (315)
T 1fft_B 216 SGMKFKAIAT 225 (315)
T ss_dssp TTCCEECCBC
T ss_pred HhccceEEEe
Confidence 2477777776
No 165
>2hj1_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; 2.10A {Haemophilus influenzae} SCOP: d.15.3.4
Probab=25.23 E-value=24 Score=27.32 Aligned_cols=24 Identities=13% Similarity=-0.033 Sum_probs=21.2
Q ss_pred EEEEEcCCCCCceEEEecCCEEEE
Q 012003 51 QVIGINGQFPGPILNVTTNWNVVV 74 (473)
Q Consensus 51 ~~~~~Ng~~pgP~i~v~~Gd~v~v 74 (473)
....+||+.-.+.-.+++||+|+|
T Consensus 59 ~~V~Vng~~v~~d~~L~dGDRVEI 82 (97)
T 2hj1_A 59 NKIGIFSRPIKLTDVLKEGDRIEI 82 (97)
T ss_dssp SEEEEEECSCCTTCBCCTTCEEEE
T ss_pred cEEEEcCEECCCCccCCCCCEEEE
Confidence 468999998878889999999987
No 166
>2c34_A ICP, inhibitor of cysteine peptidases; chagasin, immunoglobulin fold; NMR {Leishmania mexicana} SCOP: b.1.26.1
Probab=22.98 E-value=2.8e+02 Score=21.81 Aligned_cols=67 Identities=7% Similarity=0.037 Sum_probs=37.8
Q ss_pred CceEEEecCCEEEEEEEECCCCCceeeeCCCCCCCCCCCCCCCC---------CCcccCCCCceEEEEEECCCccce
Q 012003 61 GPILNVTTNWNVVVNVKNDLDEPLLLTWNGVQHRKNSWQDGVLG---------TNCPIPAGWNWTYQFQVKDQIGSF 128 (473)
Q Consensus 61 gP~i~v~~Gd~v~v~v~N~l~~~~siH~HG~~~~~~~~~DGv~~---------tq~~I~PG~~~~Y~f~~~~~~Gt~ 128 (473)
|-+|.++.||++.|.|.-+-....+-......-...-..+|... ..-.+..|+...+.|++. ++|+.
T Consensus 14 ~~~i~~~~Ge~~~I~L~~NPtTGY~W~~~~~~~~~~l~~~gl~~~s~y~~~~~~~~~vG~gG~~~~~f~a~-~~G~~ 89 (116)
T 2c34_A 14 DKWVDTHVGKTTEIHLKGNPTTGYMWTRVGFVGKDVLSDEILEVVCKYTPTPSSTPMVGVGGIYVVLVKPR-KRGHH 89 (116)
T ss_dssp CCCEEECSSCCEEEEEECCTTSSCEEEETTCTTSSCCCCSSEEEEEEEECCCCSSSSSCCCCEEEEEEEEC-SSSSE
T ss_pred CcEEEEcCCCEEEEEeCCCCCCCcEEEEecCCCcccccccccEEEEeEEeCCCCCCCcCCCceEEEEEEEe-CCceE
Confidence 46899999999999998664444333333210000000112110 011255678888999995 68864
No 167
>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A
Probab=22.90 E-value=3e+02 Score=22.11 Aligned_cols=67 Identities=13% Similarity=0.086 Sum_probs=43.7
Q ss_pred EEeCCcEE--EEEEeEeCCCceeEEEEeCceeEEEeecCceeeeeeeeEEEEcCCceEEEEEEeCC-CCCcceEEEEeec
Q 012003 221 NVEPGKTY--RLRVHNVGISTSLNFRIQNHNLLLVETEGSYTVQQNYTNMDIHVGQSFSFLVTTDQ-NASSDYYIVASPR 297 (473)
Q Consensus 221 ~v~~G~~~--rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~p~~~d~v~l~pGeR~dv~v~~~~-~~g~~y~i~~~~~ 297 (473)
.+++|+.+ +..+-|.|....-.+.+ .++ .||..+... .+.|++|+.-.|.+.... .+| +|.+++...
T Consensus 28 ~v~~G~~~ti~vtV~N~G~~~a~~~~V-----~ly-vng~~v~t~---~v~La~G~s~tv~f~~~~~~~G-~~~v~AvVD 97 (127)
T 3idu_A 28 VVGVNKLAEYEVHVKNLGGIGVPSTKV-----RVY-INGTLYKNW---TVSLGPKEEKVLTFNWTPTQEG-MYRINATVD 97 (127)
T ss_dssp EECTTCCEEEEEEEEECSSSCEEEEEE-----EEE-ETTEEEEEE---EEEECTTCEEEEEEEECCSSCE-EEEEEEEES
T ss_pred cccCCCEEEEEEEEEECCCCccCCcEE-----EEE-ECCEEEeeE---EeccCCCCeEEEEEEEEcCCCc-EEEEEEEEc
Confidence 56778777 66788999765333332 222 366655322 456999999888887653 356 898888665
No 168
>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1
Probab=21.98 E-value=1.1e+02 Score=24.83 Aligned_cols=49 Identities=14% Similarity=0.360 Sum_probs=29.9
Q ss_pred EEEEEEeEeCCCceeEEEEeCceeEEEeecCceee--e--eeeeEEEEcCCceEEE
Q 012003 227 TYRLRVHNVGISTSLNFRIQNHNLLLVETEGSYTV--Q--QNYTNMDIHVGQSFSF 278 (473)
Q Consensus 227 ~~rlRliN~~~~~~~~~~i~gh~~~via~DG~~~~--p--~~~d~v~l~pGeR~dv 278 (473)
.|++||-|.+.. .+.|-...+.|...||...+ - ..-..=.|.|||.+..
T Consensus 31 aY~I~I~N~~~~---~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PGe~f~Y 83 (126)
T 1xvs_A 31 AYLITIKNLSSQ---TVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTY 83 (126)
T ss_dssp EEEEEEEECSSS---CEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTTCEEEE
T ss_pred EEEEEEEECCCC---CEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCCCceEE
Confidence 368999998864 34555666666677765432 1 1123446778876644
No 169
>3rpf_C Molybdopterin converting factor, subunit 1 (MOAD); MCSG, PSI-biology, structural genomics, midwest center for S genomics, transferase; 1.90A {Helicobacter pylori}
Probab=21.82 E-value=34 Score=24.65 Aligned_cols=25 Identities=8% Similarity=0.027 Sum_probs=20.9
Q ss_pred EEEEEEcCCC-CCceEEEecCCEEEE
Q 012003 50 QQVIGINGQF-PGPILNVTTNWNVVV 74 (473)
Q Consensus 50 ~~~~~~Ng~~-pgP~i~v~~Gd~v~v 74 (473)
.-.+.+||++ ++..-.++.||+|.|
T Consensus 42 ~~~vavN~~~v~~~~~~l~~gDeV~i 67 (74)
T 3rpf_C 42 VCAIALNDHLIDNLNTPLKDGDVISL 67 (74)
T ss_dssp TCEEEESSSEECCTTCCCCTTCEEEE
T ss_pred ccEEEECCEEcCCCCcCCCCCCEEEE
Confidence 3567899998 888888999999876
No 170
>2x3c_A Toxic extracellular endopeptidase; hydrolase; 1.99A {Aeromonas salmonicida subsp} PDB: 2x3a_A 2x3b_A
Probab=21.61 E-value=99 Score=29.73 Aligned_cols=25 Identities=24% Similarity=0.182 Sum_probs=18.2
Q ss_pred ccCCCCceEEEEEECC-----Cccceeecc
Q 012003 108 PIPAGWNWTYQFQVKD-----QIGSFFYFP 132 (473)
Q Consensus 108 ~I~PG~~~~Y~f~~~~-----~~Gt~wYH~ 132 (473)
.|+||++.+.+|.+.. ..|+|-++.
T Consensus 96 ~L~pG~Sve~~~dla~~ydLs~gG~y~v~~ 125 (343)
T 2x3c_A 96 LLKAGQSLTVQAEVSGLYDMSAQGQYSIRY 125 (343)
T ss_dssp EECTTCEEEEEEECTTTBTCCSCEEEEEEE
T ss_pred EeCCCCeEEEEEehhhccccCCCceEEEEE
Confidence 4899999999999852 246665543
No 171
>2kut_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Geobacter metallireducens}
Probab=21.06 E-value=1.9e+02 Score=23.15 Aligned_cols=54 Identities=20% Similarity=0.034 Sum_probs=29.9
Q ss_pred ecCCEE--EEEEEECCCCCceeeeCCCCCCC-CCCCCCCCC-C--CcccCCCCceE--EEEEEC
Q 012003 67 TTNWNV--VVNVKNDLDEPLLLTWNGVQHRK-NSWQDGVLG-T--NCPIPAGWNWT--YQFQVK 122 (473)
Q Consensus 67 ~~Gd~v--~v~v~N~l~~~~siH~HG~~~~~-~~~~DGv~~-t--q~~I~PG~~~~--Y~f~~~ 122 (473)
.+||.+ .++|+|.-.....- +++.+.. .+...|... + -..|++|++.+ +.|.+.
T Consensus 13 ~~g~~vTvsatVkN~Gt~~s~a--~~V~~yl~~p~~gg~~vgt~tv~~LaaG~s~t~~v~~~~~ 74 (122)
T 2kut_A 13 FEGEEITVSARVTNRGAAEAHN--VPVAVYLGNPAQGGVEIGRDTISRIPVGGTGLARVQWKAT 74 (122)
T ss_dssp CTTCEEEEEEEEECCSSSCBCC--CCEEECSSCTTTCCCCCBCCCCSCBCTTCEEECCEEEECC
T ss_pred CCCCeEEEEEEEEeCCCcccCc--EEEEEEeCCCccCCeEEeeEEccccCCCCeEEEEEEEecC
Confidence 456655 66789986543331 3333221 122333443 2 35799999999 666653
No 172
>2wtp_A ORF131 protein, CZCE; metal binding protein, heavy metal, copper binding; HET: TRS; 1.50A {Ralstonia metallidurans CH34} PDB: 2wto_A*
Probab=21.02 E-value=32 Score=28.11 Aligned_cols=17 Identities=18% Similarity=0.212 Sum_probs=15.9
Q ss_pred eEEEecCCEEEEEEEEC
Q 012003 63 ILNVTTNWNVVVNVKND 79 (473)
Q Consensus 63 ~i~v~~Gd~v~v~v~N~ 79 (473)
-|.|+.|++|++.+.|+
T Consensus 72 ~InV~~GETVrF~v~nk 88 (131)
T 2wtp_A 72 YVNVDSGETVAFRAGEK 88 (131)
T ss_dssp EEEEETTCEEEEEETTE
T ss_pred EEEecCCCEEEEEeCCc
Confidence 49999999999999998
No 173
>2aqm_A Superoxide dismutase [CU-ZN]; oxidoreductase; 1.10A {Brucella abortus}
Probab=20.91 E-value=53 Score=27.67 Aligned_cols=25 Identities=4% Similarity=0.070 Sum_probs=19.6
Q ss_pred cCCcEEEEEEecCCCCCCceeecCC
Q 012003 438 TYKGFMEIIFQNNDTTVQSYHMDGY 462 (473)
Q Consensus 438 ~~g~~Veivl~N~~~~~HP~HLHGh 462 (473)
+.+-.|++.|.+..++.|-||+|-.
T Consensus 28 ~~gv~v~~~l~GL~pG~hGfHIHe~ 52 (154)
T 2aqm_A 28 PGGLHFKVNMEKLTPGYHGFHVHEN 52 (154)
T ss_dssp TTSEEEEEEECSCCSEEECEEEESS
T ss_pred CCCEEEEEEEECCCCCcceEEEccC
Confidence 3455778888888888999999943
No 174
>1eqw_A Cu,Zn superoxide dismutase; greek KEY B-barrel, oxidoreductase; 2.30A {Salmonella typhimurium} SCOP: b.1.8.1 PDB: 2wn0_A* 2wn1_A* 2wwn_A* 2wwo_A*
Probab=20.25 E-value=54 Score=27.71 Aligned_cols=25 Identities=8% Similarity=0.208 Sum_probs=19.8
Q ss_pred cCCcEEEEEEecCCCCCCceeecCC
Q 012003 438 TYKGFMEIIFQNNDTTVQSYHMDGY 462 (473)
Q Consensus 438 ~~g~~Veivl~N~~~~~HP~HLHGh 462 (473)
+.+-.|++.|.+..++.|-||+|-.
T Consensus 28 ~~gv~v~~~l~GL~pG~hGfHIHe~ 52 (156)
T 1eqw_A 28 PYGLLFTPHLNGLTPGIHGFHVHTN 52 (156)
T ss_dssp TTEEEEEEEECSCCSEEECEEEESS
T ss_pred CCcEEEEEEEeCCCCCceeEEECCC
Confidence 4456788888888888999999953
No 175
>1eso_A SOD, Cu, Zn superoxide dismutase; oxidoreductase, monomeric superoxide dismutase, copper enzymes, enzyme evolution, X- RAY; 2.00A {Escherichia coli} SCOP: b.1.8.1 PDB: 2k4w_A
Probab=20.09 E-value=55 Score=27.60 Aligned_cols=25 Identities=4% Similarity=-0.071 Sum_probs=19.7
Q ss_pred cCCcEEEEEEecCCCCCCceeecCC
Q 012003 438 TYKGFMEIIFQNNDTTVQSYHMDGY 462 (473)
Q Consensus 438 ~~g~~Veivl~N~~~~~HP~HLHGh 462 (473)
+.+-.|++.|.+..++.|-||+|-.
T Consensus 28 ~~gv~v~~~l~GL~pG~hGfHIHe~ 52 (154)
T 1eso_A 28 DKGLEFSPDLKALPPGEHGFHIHAK 52 (154)
T ss_dssp TTEEEEEEEECSCCSEEECEEEESS
T ss_pred CCCEEEEEEEECCCCCcccEEEcCC
Confidence 4455788888888888999999953
Done!