Your job contains 1 sequence.
>012004
MALNLQIPAEIKALSFLETTRSNHRLPKLSGGFPLKRKDNATATFGRIVQCSAQGPPPAW
PGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ
VKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCA
GLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE
GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEA
HYLFGAEYDNIEIIIHPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSEL
TWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIG
YLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 012004
(473 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TIGR_CMR|BA_3959 - symbol:BA_3959 "1-deoxy-D-xylulose 5-p... 895 1.1e-89 1
TIGR_CMR|GSU_1915 - symbol:GSU_1915 "1-deoxy-D-xylulose 5... 880 4.1e-88 1
TIGR_CMR|BA_3409 - symbol:BA_3409 "1-deoxy-D-xylulose 5-p... 849 8.0e-85 1
TIGR_CMR|SPO_1667 - symbol:SPO_1667 "1-deoxy-D-xylulose 5... 758 3.5e-75 1
TIGR_CMR|CHY_1778 - symbol:CHY_1778 "1-deoxy-D-xylulose 5... 731 2.5e-72 1
TIGR_CMR|DET_0371 - symbol:DET_0371 "1-deoxy-D-xylulose 5... 725 1.1e-71 1
UNIPROTKB|P45568 - symbol:dxr "Dxr" species:83333 "Escher... 716 9.9e-71 1
TIGR_CMR|CPS_1559 - symbol:CPS_1559 "1-deoxy-D-xylulose 5... 685 1.9e-67 1
UNIPROTKB|Q9KPV8 - symbol:dxr "1-deoxy-D-xylulose 5-phosp... 669 9.4e-66 1
TIGR_CMR|VC_2254 - symbol:VC_2254 "1-deoxy-D-xylulose 5-p... 669 9.4e-66 1
GENEDB_PFALCIPARUM|PF14_0641 - symbol:PF14_0641 "1-deoxy-... 643 5.4e-63 1
UNIPROTKB|Q8IKG4 - symbol:DXR "1-deoxy-D-xylulose 5-phosp... 643 5.4e-63 1
TIGR_CMR|ECH_0557 - symbol:ECH_0557 "1-deoxy-D-xylulose 5... 642 6.9e-63 1
UNIPROTKB|P64012 - symbol:dxr "1-deoxy-D-xylulose 5-phosp... 639 1.4e-62 1
TIGR_CMR|SO_1635 - symbol:SO_1635 "1-deoxy-D-xylulose 5-p... 631 1.0e-61 1
TIGR_CMR|APH_0440 - symbol:APH_0440 "1-deoxy-D-xylulose 5... 598 3.2e-58 1
TIGR_CMR|NSE_0443 - symbol:NSE_0443 "1-deoxy-D-xylulose 5... 472 7.1e-45 1
TIGR_CMR|CJE_1535 - symbol:CJE_1535 "1-deoxy-D-xylulose 5... 460 1.3e-43 1
>TIGR_CMR|BA_3959 [details] [associations]
symbol:BA_3959 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:198094 "Bacillus anthracis str. Ames"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 RefSeq:NP_846202.1
RefSeq:YP_020598.1 RefSeq:YP_029923.1 ProteinModelPortal:Q81WL4
DNASU:1086817 EnsemblBacteria:EBBACT00000010342
EnsemblBacteria:EBBACT00000016898 EnsemblBacteria:EBBACT00000021953
GeneID:1086817 GeneID:2819523 GeneID:2849846 KEGG:ban:BA_3959
KEGG:bar:GBAA_3959 KEGG:bat:BAS3672 OMA:AHPNWVM
ProtClustDB:PRK05447 BioCyc:BANT260799:GJAJ-3730-MONOMER
BioCyc:BANT261594:GJ7F-3847-MONOMER Uniprot:Q81WL4
Length = 380
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 180/382 (47%), Positives = 254/382 (66%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K IS+LG++GSIGTQTLD++ H D+FR+VA + G NI ++ F PQ+V+V+ E
Sbjct: 2 KNISLLGASGSIGTQTLDVLRSHPDQFRLVAFSVGKNIDYAVKVIQEFSPQIVSVQREE- 60
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
D +K L V +I+ G +G++E A HPDA VV +VG GL PT+ AIEA K I
Sbjct: 61 -DVLK--LQAVSGNTKIVYGSEGLLEVALHPDAEIVVNAVVGSVGLLPTLRAIEAKKTIG 117
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
+ANKETL+ G V+ A KHN+ +LP DSEHSAIFQC+ G E + R+I+TASGG+FR
Sbjct: 118 IANKETLVTAGHLVMEAARKHNVSLLPVDSEHSAIFQCLNGENEKRISRLIITASGGSFR 177
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
D ++L V V DAL+HPNWSMG KIT+DSAT+ NKGLEVIEAH+LFG Y+
Sbjct: 178 DKTRDELHHVTVEDALRHPNWSMGSKITIDSATMMNKGLEVIEAHWLFGIPYEQIDVVLH 237
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
MVE +D SV+ QLG PDMR+PI Y +++P+R+ S+ +L+L ++G+L F
Sbjct: 238 KESIIHSMVEFEDRSVMAQLGSPDMRVPIQYALTYPDRLPLSDTK--QLNLWEIGTLHFE 295
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
+ ++ + AY AG+AGG+M V++AANE AVE F+ ++IG+L + ++E + H
Sbjct: 296 KMNQERFRCLRFAYEAGKAGGSMPAVMNAANEVAVEAFLQKRIGFLTVEDLIEKAMNHH- 354
Query: 437 ADLVTSPSLEDIIHYDAWAREY 458
+++ PSLE+I+ DA R +
Sbjct: 355 -NVIARPSLEEILEIDAATRRF 375
>TIGR_CMR|GSU_1915 [details] [associations]
symbol:GSU_1915 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243231 "Geobacter sulfurreducens PCA"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0070402 eggNOG:COG0743
HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
RefSeq:NP_952964.1 ProteinModelPortal:Q74BW4 SMR:Q74BW4
GeneID:2688386 KEGG:gsu:GSU1915 PATRIC:22026695
BioCyc:GSUL243231:GH27-1966-MONOMER Uniprot:Q74BW4
Length = 386
Score = 880 (314.8 bits), Expect = 4.1e-88, P = 4.1e-88
Identities = 186/386 (48%), Positives = 249/386 (64%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K I++LGSTGSIG TL++V+ H D+FRVVAL AG+N+ +L Q++ F+PQ+V+V +E L
Sbjct: 2 KNITILGSTGSIGVSTLEVVSAHPDRFRVVALTAGNNLEMLRQQIETFRPQMVSVLSEKL 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
E+ +L KPEI G +G+I AA DA VV IVG AGL PT AAI AGKD+A
Sbjct: 62 AVELDRSLPGY--KPEIHYGVEGLIAAATAGDAHMVVAAIVGAAGLVPTAAAIRAGKDVA 119
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
LANKETL+ G ++ L N+++ P DSEHSA+FQ ++G + RIILTASGG F
Sbjct: 120 LANKETLVTAGRLIMDLVRDKNVRLYPVDSEHSAVFQSMEGQSRKDVLRIILTASGGPFL 179
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
+ P+++L V + DAL HPNWSMG+KIT+DSAT+ NKGLEVIEA +LF +
Sbjct: 180 NLPLDQLSRVSIDDALNHPNWSMGRKITIDSATMMNKGLEVIEARWLFDTPAERIDVNIH 239
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
MVE D SV+ QLG PDM+ PI Y +++PER+ P LDL+ L LTF
Sbjct: 240 PQSIIHSMVEYVDGSVMAQLGVPDMKAPIAYALTYPERVPTG--VNP-LDLTALSGLTFF 296
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
PD ++P++ LAY A AG +M V++AANE AVE F+ IG++DI + D H+
Sbjct: 297 KPDYRRFPALKLAYDALAAGESMPAVMNAANEVAVEAFLSGVIGFIDIAATIARIMDAHE 356
Query: 437 ADLVTSPSLEDIIHYDAWAREYAAGL 462
A T ++E+ + D WARE A L
Sbjct: 357 AH--TLSTIEEALITDRWAREKAREL 380
>TIGR_CMR|BA_3409 [details] [associations]
symbol:BA_3409 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:198094 "Bacillus anthracis str. Ames"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0070402
RefSeq:NP_845693.1 RefSeq:YP_020043.1 RefSeq:YP_029417.1
ProteinModelPortal:Q81N10 DNASU:1085180
EnsemblBacteria:EBBACT00000009002 EnsemblBacteria:EBBACT00000018754
EnsemblBacteria:EBBACT00000022801 GeneID:1085180 GeneID:2817385
GeneID:2849772 KEGG:ban:BA_3409 KEGG:bar:GBAA_3409 KEGG:bat:BAS3160
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 OMA:FIDGSVM
ProtClustDB:PRK12464 BioCyc:BANT260799:GJAJ-3222-MONOMER
BioCyc:BANT261594:GJ7F-3332-MONOMER GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 Uniprot:Q81N10
Length = 385
Score = 849 (303.9 bits), Expect = 8.0e-85, P = 8.0e-85
Identities = 173/383 (45%), Positives = 242/383 (63%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K IS+LGSTGSIGT LD+V+ H + F++V L A NI LL Q+K F+P++V+V + L
Sbjct: 3 KYISILGSTGSIGTSALDVVSAHPEHFKIVGLTANYNIELLEQQIKTFQPRIVSVATKEL 62
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
D ++ + +I G G+I A HP++ V++ +VG +GL PT+ A++A KDIA
Sbjct: 63 ADTLR---TRISTNTKITYGTDGLIAVATHPNSNLVLSSVVGVSGLLPTIEALKAKKDIA 119
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
+ANKETL+A G V LA ++ +++P DSEHSAIFQC+ G + ++I+TASGGAFR
Sbjct: 120 IANKETLVAAGHIVTELAKQNGCRLIPVDSEHSAIFQCLNGENNKEIDKLIVTASGGAFR 179
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
D E++K ++ DALKHPNW MG K+T+DSATL NKG EV+EA +LF Y+
Sbjct: 180 DKTREEMKTLQAKDALKHPNWLMGAKLTIDSATLMNKGFEVMEARWLFDIPYEKINVMIH 239
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
+VE D SVI QLG PDMR+PI Y +P R+ S + +L+L ++GSL F
Sbjct: 240 KESIIHSLVEFIDGSVIAQLGAPDMRMPIQYAFHYPTRLPSS---YEKLNLLEIGSLHFE 296
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
PD K+P + AY G+ GG VL+AANE A +F+ +I + DI K + T + H
Sbjct: 297 KPDLEKFPCLQYAYECGKIGGITPAVLNAANEIANALFLKNEIAFFDIEKTIYKTVEAHH 356
Query: 437 ADLVTSPSLEDIIHYDAWAREYA 459
V PSL+ I+ D WAR+YA
Sbjct: 357 N--VKDPSLDAILEADQWARQYA 377
>TIGR_CMR|SPO_1667 [details] [associations]
symbol:SPO_1667 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0030604 "1-deoxy-D-xylulose-5-phosphate
reductoisomerase activity" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0046872 GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 RefSeq:YP_166906.1 ProteinModelPortal:Q5LSU9
GeneID:3194834 KEGG:sil:SPO1667 PATRIC:23376659 Uniprot:Q5LSU9
Length = 395
Score = 758 (271.9 bits), Expect = 3.5e-75, P = 3.5e-75
Identities = 162/384 (42%), Positives = 230/384 (59%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
+ +S+ G+TGSIG T+D++A D + VVAL+ G+NI LA +R + V
Sbjct: 7 RKVSIFGATGSIGQNTIDLIARDPDAYDVVALSGGANIAQLAADARRLRADVAVTAFPER 66
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
L +++ ALA E AG ++EA P A V++ IVG AGL P +AA++ G +A
Sbjct: 67 LHDLRAALAG--SGVEAAAGPAALVEAGARP-ADWVMSAIVGAAGLAPGLAALKQGATLA 123
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
LANKETL+ G VL A +H ++LP DSEHSA+FQ + G A+ RI++TASGGAFR
Sbjct: 124 LANKETLVCAGALVLETARRHGARLLPVDSEHSAVFQALVGEDMEAVERIVITASGGAFR 183
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
DWP+E+L A +HPNW MG++IT+DSA++FNK LEVIE FG + D
Sbjct: 184 DWPLERLASATAEQAAQHPNWDMGQRITIDSASMFNKALEVIETREFFGIDPDRIEVIVH 243
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
+V +D +++ LG PDMR I Y + WPER +L RLDL+ LG L F
Sbjct: 244 PESMVHALVGFRDGALMAHLGAPDMRHAIGYALHWPER---RDLPVARLDLAALGQLNFR 300
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
APD A+YP++ LA GG V +AA E+A++ FI +IG+LD+ +VE D+ +
Sbjct: 301 APDDARYPALRLARWVMARGGLSGAVFNAAKERALDHFIAGRIGFLDMAGLVEAVLDRFE 360
Query: 437 AD--LVTSP-SLEDIIHYDAWARE 457
AD L+ +P +L+ + D AR+
Sbjct: 361 ADPGLIDAPMTLDTVTQTDHLARQ 384
>TIGR_CMR|CHY_1778 [details] [associations]
symbol:CHY_1778 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:246194 "Carboxydothermus hydrogenoformans
Z-2901" [GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
RefSeq:YP_360598.1 ProteinModelPortal:Q3AB86 STRING:Q3AB86
GeneID:3728128 KEGG:chy:CHY_1778 PATRIC:21276667
BioCyc:CHYD246194:GJCN-1777-MONOMER Uniprot:Q3AB86
Length = 384
Score = 731 (262.4 bits), Expect = 2.5e-72, P = 2.5e-72
Identities = 175/389 (44%), Positives = 237/389 (60%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K + +LGSTGSIG Q+L+++ DKF VVALAA N LL +Q RFK V++ L
Sbjct: 2 KKLVILGSTGSIGRQSLEVIEFFPDKFSVVALAAAKNGKLLLEQCLRFK-----VKHAFL 56
Query: 137 LDEIKEALANVEEKPE-IL--AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193
DE E K IL G + ++ A P ++T I G L PT+ A++AGK
Sbjct: 57 ADEESYKTYYQEFKNHGILLTTGSKELLNLALLPGVDGIITAIPGTICLLPTIEALKAGK 116
Query: 194 DIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGG 253
I LANKET++A G + PL K +LP DSEHSAIFQ ++G ++++++TASGG
Sbjct: 117 IIYLANKETMVAAGEIITPLM-KLGENLLPVDSEHSAIFQALRGEKLAWVKKLLITASGG 175
Query: 254 AFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXX 313
FR++ +E+LK V VA+ALKHP W MG KIT+DSATL NKGLE+IEAH+LF Y+
Sbjct: 176 PFREYTLEQLKNVTVAEALKHPRWKMGNKITIDSATLMNKGLEIIEAHFLFQIPYEKIEP 235
Query: 314 XXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSL 373
+VE D SV+ QLG PDMR PI Y +++PER + + L P L+L+++G L
Sbjct: 236 VIHPQSVIHSLVEFYDGSVLAQLGLPDMRHPIQYALTYPER-FPNNL--PGLNLTEIGVL 292
Query: 374 TFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVE--LT 431
+F PD ++P++ LA AG+AG VL+AANE AVE F+ KI +L+I ++VE L
Sbjct: 293 SFEKPDYERFPALKLAIQAGKAGNIYPAVLNAANEIAVEAFLAGKIKFLEIAQIVEKVLN 352
Query: 432 C-DKHKADLVTSPSLEDIIHYDAWAREYA 459
C K DL E I+ D ARE A
Sbjct: 353 CFSPVKMDL------ETILEVDFRARELA 375
>TIGR_CMR|DET_0371 [details] [associations]
symbol:DET_0371 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243164 "Dehalococcoides ethenogenes 195"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 GO:GO:0016853 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0070402 GO:GO:0016114 eggNOG:COG0743 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:AHPNWVM ProtClustDB:PRK05447 RefSeq:YP_181117.1
ProteinModelPortal:Q3Z9I2 STRING:Q3Z9I2 GeneID:3230315
KEGG:det:DET0371 PATRIC:21607811 BioCyc:DETH243164:GJNF-371-MONOMER
Uniprot:Q3Z9I2
Length = 377
Score = 725 (260.3 bits), Expect = 1.1e-71, P = 1.1e-71
Identities = 166/380 (43%), Positives = 227/380 (59%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K I +LGSTGSIG QTL+++ D+F+V+ LA G+N LL +Q ++F+P+ + +N
Sbjct: 6 KNIVILGSTGSIGRQTLEVIHSLPDRFKVLGLAGGTNANLLKEQTEQFRPKYIYCQN--- 62
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+ A + E E A P+A VV G AGL+P +AA AGK IA
Sbjct: 63 CHDTNACTAR------FIPME----EMAALPEADIVVVATPGSAGLQPVLAAARAGKVIA 112
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
LANKE+L++ G V A ++ KILP DSEHSAI+QC+ G R IILTASGG FR
Sbjct: 113 LANKESLVSAGEIVTATAQENRAKILPVDSEHSAIWQCLSGEVTPPAR-IILTASGGPFR 171
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
+++ +V ALKHP+W MG K+T+DSA+L NKGLE+IEA +LF N
Sbjct: 172 SLTKDEIAKVTPEQALKHPSWKMGTKVTIDSASLMNKGLEIIEARWLFDMPVRNIQVVIH 231
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
MVE D S+ QL PDMR PI +++PER+ + LT PRL+ +++G L F
Sbjct: 232 PQSIIHSMVEFADGSLKAQLSRPDMRFPIQCALTYPERL--TNLTLPRLNWAEIGKLDFE 289
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
PD ++P + LA +AG G T L AA+E AVEMF+ +IG+ I +++ D H+
Sbjct: 290 MPDMDRFPCLKLAISAGEEGKTFPAALCAADELAVEMFLKGEIGFGQIPQLIAKVLDAHQ 349
Query: 437 ADLVTSPSLEDIIHYDAWAR 456
A V SPSL+DI+ DAWAR
Sbjct: 350 A--VASPSLDDILAADAWAR 367
>UNIPROTKB|P45568 [details] [associations]
symbol:dxr "Dxr" species:83333 "Escherichia coli K-12"
[GO:0070402 "NADPH binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0019288 "isopentenyl diphosphate
biosynthetic process, mevalonate-independent pathway" evidence=IEA]
[GO:0055114 "oxidation-reduction process" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0008299 "isoprenoid
biosynthetic process" evidence=IEA] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=IEA;IDA] [GO:0006744 "ubiquinone biosynthetic process"
evidence=IDA] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006744 EMBL:U70214
GO:GO:0070402 eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 EMBL:AB013300 EMBL:D13334 PIR:E64741
RefSeq:NP_414715.1 RefSeq:YP_488475.1 PDB:1JVS PDB:1K5H PDB:1ONN
PDB:1ONO PDB:1ONP PDB:1Q0H PDB:1Q0L PDB:1Q0Q PDB:1T1R PDB:1T1S
PDB:2EGH PDB:3ANL PDB:3ANM PDB:3ANN PDB:3R0I PDBsum:1JVS
PDBsum:1K5H PDBsum:1ONN PDBsum:1ONO PDBsum:1ONP PDBsum:1Q0H
PDBsum:1Q0L PDBsum:1Q0Q PDBsum:1T1R PDBsum:1T1S PDBsum:2EGH
PDBsum:3ANL PDBsum:3ANM PDBsum:3ANN PDBsum:3R0I
ProteinModelPortal:P45568 SMR:P45568 DIP:DIP-9484N IntAct:P45568
PRIDE:P45568 EnsemblBacteria:EBESCT00000003838
EnsemblBacteria:EBESCT00000014771 GeneID:12930757 GeneID:945019
KEGG:ecj:Y75_p0169 KEGG:eco:b0173 PATRIC:32115455 EchoBASE:EB2575
EcoGene:EG12715 BioCyc:EcoCyc:DXPREDISOM-MONOMER
BioCyc:ECOL316407:JW0168-MONOMER BioCyc:MetaCyc:DXPREDISOM-MONOMER
SABIO-RK:P45568 BindingDB:P45568 ChEMBL:CHEMBL4091
EvolutionaryTrace:P45568 Genevestigator:P45568 Uniprot:P45568
Length = 398
Score = 716 (257.1 bits), Expect = 9.9e-71, P = 9.9e-71
Identities = 166/393 (42%), Positives = 224/393 (56%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 62 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC----IQ---G---LPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ IQ G L + + I
Sbjct: 122 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 182 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 242 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFK 426
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 299 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDI-A 357
Query: 427 VVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
+ L+ K D+ ++D++ DA ARE A
Sbjct: 358 ALNLSV-LEKMDMREPQCVDDVLSVDANAREVA 389
>TIGR_CMR|CPS_1559 [details] [associations]
symbol:CPS_1559 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:167879 "Colwellia psychrerythraea 34H"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
HOGENOM:HOG000007221 RefSeq:YP_268301.1 ProteinModelPortal:Q485G4
SMR:Q485G4 STRING:Q485G4 GeneID:3520686 KEGG:cps:CPS_1559
PATRIC:21466325 BioCyc:CPSY167879:GI48-1640-MONOMER Uniprot:Q485G4
Length = 411
Score = 685 (246.2 bits), Expect = 1.9e-67, P = 1.9e-67
Identities = 162/399 (40%), Positives = 232/399 (58%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ-VVAVRNE- 134
+ + +LGSTGSIG TLD+V H ++F+V++LAA +++ ++ +Q FKPQ VV V +E
Sbjct: 4 RQLCILGSTGSIGCSTLDVVRLHPERFQVISLAAYTSVDVIFEQCIEFKPQQVVLVSSEH 63
Query: 135 -SLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193
+LL + K ANV +L+GEQ +I+ A ++ TV+ IVG +GL PT+AA+ AGK
Sbjct: 64 AALLTQ-KLNDANVSNIT-VLSGEQALIDIAECQNSDTVMASIVGASGLLPTLAAVNAGK 121
Query: 194 DIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG----------LPEGAL 243
+ LANKE L+ G + ++LP DSEH+AIFQC+ L +
Sbjct: 122 RVLLANKEALVTSGAIFMAAVKASGAELLPIDSEHNAIFQCLPSQQQAEIGECQLLANGI 181
Query: 244 RRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYL 303
+I+LT SGG FR ++ L+ V + A HPNW MG+KI+VDSAT+ NKGLE IEA +L
Sbjct: 182 SKILLTGSGGPFRTRAIDTLESVTPSQACAHPNWDMGRKISVDSATMMNKGLEFIEAKWL 241
Query: 304 FGAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWP 363
F E ++ MV+ +D SVI Q+G PDMR PI + +S+PERI E
Sbjct: 242 FNVEAEDIQVVLHPQSTIHSMVQYKDGSVIAQMGNPDMRTPIAHALSFPERI---ESGVA 298
Query: 364 RLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLD 423
LD S F D +YP++ LA A + G L+AANE AV F+DEKI + D
Sbjct: 299 PLDFFNTPSFEFQPVDFERYPNLELAIEACKQGQAACTALNAANEIAVAAFLDEKIKFTD 358
Query: 424 IFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGL 462
I+K+ E + K + V + + ++I D AR +A L
Sbjct: 359 IYKINETSVKKFVSQKVDN--INEVIALDEQARSFAQTL 395
>UNIPROTKB|Q9KPV8 [details] [associations]
symbol:dxr "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:243277 "Vibrio cholerae O1 biovar El Tor
str. N16961" [GO:0008299 "isoprenoid biosynthetic process"
evidence=ISS] [GO:0016616 "oxidoreductase activity, acting on the
CH-OH group of donors, NAD or NADP as acceptor" evidence=ISS]
HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0070402
GO:GO:0016616 GO:GO:0008299 eggNOG:COG0743 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447
PIR:D82099 RefSeq:NP_231885.1 ProteinModelPortal:Q9KPV8 SMR:Q9KPV8
DNASU:2613176 GeneID:2613176 KEGG:vch:VC2254 PATRIC:20083551
Uniprot:Q9KPV8
Length = 402
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 155/395 (39%), Positives = 220/395 (55%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
+ +++LG+TGSIG TL ++A++ +F +VAL AG N+ + ++++P+ + S
Sbjct: 2 RKLTILGATGSIGASTLKVIAQNPQQFSIVALVAGVNVAKMYQLCQQWRPKYAVMATASA 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
E++ L N E+L GE+ + + A D TV+ IVG AGL PT+AA++AGK +
Sbjct: 62 ASELQGLLKNQAMATEVLYGEEAMCQVAALDDVDTVMAAIVGAAGLLPTMAAVKAGKRVL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC----IQ---G---LPEGALRRI 246
LANKE L+ G + + +++P DSEH+AIFQC IQ G L + + I
Sbjct: 122 LANKEALVMSGQLFIDAVAQSGAELMPVDSEHNAIFQCLPTEIQTQLGRCDLSQHGIDHI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR + L V A+ HPNWSMG KI+VDSAT+ NKGLE IEA +LF
Sbjct: 182 LLTGSGGPFRYSDLATLDSVTPEQAIAHPNWSMGPKISVDSATMMNKGLEYIEAKWLFNT 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
+ MV+ QD SVI QLG PDM PI Y M++PER+ P LD
Sbjct: 242 SREQLKVLIHPQSVIHSMVQYQDGSVIAQLGEPDMATPISYAMAYPERVTAGV---PALD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFK 426
++L LTF+ D A+YP + LA A G T L+AANE AV+ F+ KI + DI
Sbjct: 299 FTRLQQLTFMEVDFARYPCLQLAMDACFLGQHATTSLNAANEVAVDAFLKRKIRFTDIAL 358
Query: 427 VVELTCDKHKAD--LVTSPSLEDIIHYDAWAREYA 459
+ + K A + LE ++ D AR +A
Sbjct: 359 INDQVLSKVCATNTQLHCRDLESLLELDTMARHFA 393
>TIGR_CMR|VC_2254 [details] [associations]
symbol:VC_2254 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:686 "Vibrio cholerae O1 biovar El Tor"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0070402 GO:GO:0016616 GO:GO:0008299
eggNOG:COG0743 KO:K00099 GO:GO:0030604 GO:GO:0019288
InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055
TIGRFAMs:TIGR00243 OMA:AHPNWVM ProtClustDB:PRK05447 PIR:D82099
RefSeq:NP_231885.1 ProteinModelPortal:Q9KPV8 SMR:Q9KPV8
DNASU:2613176 GeneID:2613176 KEGG:vch:VC2254 PATRIC:20083551
Uniprot:Q9KPV8
Length = 402
Score = 669 (240.6 bits), Expect = 9.4e-66, P = 9.4e-66
Identities = 155/395 (39%), Positives = 220/395 (55%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
+ +++LG+TGSIG TL ++A++ +F +VAL AG N+ + ++++P+ + S
Sbjct: 2 RKLTILGATGSIGASTLKVIAQNPQQFSIVALVAGVNVAKMYQLCQQWRPKYAVMATASA 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
E++ L N E+L GE+ + + A D TV+ IVG AGL PT+AA++AGK +
Sbjct: 62 ASELQGLLKNQAMATEVLYGEEAMCQVAALDDVDTVMAAIVGAAGLLPTMAAVKAGKRVL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC----IQ---G---LPEGALRRI 246
LANKE L+ G + + +++P DSEH+AIFQC IQ G L + + I
Sbjct: 122 LANKEALVMSGQLFIDAVAQSGAELMPVDSEHNAIFQCLPTEIQTQLGRCDLSQHGIDHI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR + L V A+ HPNWSMG KI+VDSAT+ NKGLE IEA +LF
Sbjct: 182 LLTGSGGPFRYSDLATLDSVTPEQAIAHPNWSMGPKISVDSATMMNKGLEYIEAKWLFNT 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
+ MV+ QD SVI QLG PDM PI Y M++PER+ P LD
Sbjct: 242 SREQLKVLIHPQSVIHSMVQYQDGSVIAQLGEPDMATPISYAMAYPERVTAGV---PALD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFK 426
++L LTF+ D A+YP + LA A G T L+AANE AV+ F+ KI + DI
Sbjct: 299 FTRLQQLTFMEVDFARYPCLQLAMDACFLGQHATTSLNAANEVAVDAFLKRKIRFTDIAL 358
Query: 427 VVELTCDKHKAD--LVTSPSLEDIIHYDAWAREYA 459
+ + K A + LE ++ D AR +A
Sbjct: 359 INDQVLSKVCATNTQLHCRDLESLLELDTMARHFA 393
>GENEDB_PFALCIPARUM|PF14_0641 [details] [associations]
symbol:PF14_0641 "1-deoxy-D-xylulose
5-phosphate reductoisomerase" species:5833 "Plasmodium falciparum"
[GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR003821
InterPro:IPR013512 InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE014187 GO:GO:0070402 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:LYDIPFD RefSeq:XP_001348815.1 HSSP:P45568
ProteinModelPortal:Q8IKG4 EnsemblProtists:PF14_0641:mRNA
GeneID:812223 KEGG:pfa:PF14_0641 EuPathDB:PlasmoDB:PF3D7_1467300
ProtClustDB:CLSZ2435007 GO:GO:0020011 Uniprot:Q8IKG4
Length = 488
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 147/398 (36%), Positives = 229/398 (57%)
Query: 83 GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142
GS G+ + + E+ F V AL ++ L +Q + F P+ + + ++S+ +E+KE
Sbjct: 87 GSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDKSVYEELKE 146
Query: 143 ALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKE 201
+ N+++ KP IL G++G+ E +V GI GL T+ AI K +ALANKE
Sbjct: 147 LVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANKE 206
Query: 202 TLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCIQG---LPEGALR----------RII 247
++++ G F+ L + H N KI+P DSEHSAIFQC+ L L+ +I
Sbjct: 207 SIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIF 266
Query: 248 LTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAE 307
L +SGG F++ +++LK V +ALKHP W MGKKIT+DSAT+ NKGLEVIE H+LF +
Sbjct: 267 LCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVD 326
Query: 308 YDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDL 367
Y++ VE D SVI Q+ +PDM++PI+Y+++WP+RI + L P LDL
Sbjct: 327 YNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLTWPDRIK-TNLK-P-LDL 383
Query: 368 SKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKV 427
+++ +LTF P +P + LAY AG G VL+A+NE A +F++ KI Y DI +
Sbjct: 384 AQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIANNLFLNNKIKYFDISSI 443
Query: 428 VELTCDKHKADLVTSPS---LEDIIHYDAWAREYAAGL 462
+ + + V+ S ++ I+ +WA++ A +
Sbjct: 444 ISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDI 481
Score = 300 (110.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 69/166 (41%), Positives = 103/166 (62%)
Query: 77 KPISV--LGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131
KPI+V GSTGSIGT L+I+ E E+ F V AL ++ L +Q + F P+ + +
Sbjct: 76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCI 135
Query: 132 RNESLLDEIKEALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIE 190
++S+ +E+KE + N+++ KP IL G++G+ E +V GI GL T+ AI
Sbjct: 136 HDKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIM 195
Query: 191 AGKDIALANKETLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCI 235
K +ALANKE++++ G F+ L + H N KI+P DSEHSAIFQC+
Sbjct: 196 NNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCL 241
>UNIPROTKB|Q8IKG4 [details] [associations]
symbol:DXR "1-deoxy-D-xylulose 5-phosphate
reductoisomerase, apicoplast" species:36329 "Plasmodium falciparum
3D7" [GO:0020011 "apicoplast" evidence=IDA] InterPro:IPR003821
InterPro:IPR013512 InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:AE014187 GO:GO:0070402 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:LYDIPFD RefSeq:XP_001348815.1 HSSP:P45568
ProteinModelPortal:Q8IKG4 EnsemblProtists:PF14_0641:mRNA
GeneID:812223 KEGG:pfa:PF14_0641 EuPathDB:PlasmoDB:PF3D7_1467300
ProtClustDB:CLSZ2435007 GO:GO:0020011 Uniprot:Q8IKG4
Length = 488
Score = 643 (231.4 bits), Expect = 5.4e-63, P = 5.4e-63
Identities = 147/398 (36%), Positives = 229/398 (57%)
Query: 83 GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142
GS G+ + + E+ F V AL ++ L +Q + F P+ + + ++S+ +E+KE
Sbjct: 87 GSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIHDKSVYEELKE 146
Query: 143 ALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKE 201
+ N+++ KP IL G++G+ E +V GI GL T+ AI K +ALANKE
Sbjct: 147 LVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMNNKIVALANKE 206
Query: 202 TLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCIQG---LPEGALR----------RII 247
++++ G F+ L + H N KI+P DSEHSAIFQC+ L L+ +I
Sbjct: 207 SIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVLKTKCLQDNFSKINNINKIF 266
Query: 248 LTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAE 307
L +SGG F++ +++LK V +ALKHP W MGKKIT+DSAT+ NKGLEVIE H+LF +
Sbjct: 267 LCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEVIETHFLFDVD 326
Query: 308 YDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDL 367
Y++ VE D SVI Q+ +PDM++PI+Y+++WP+RI + L P LDL
Sbjct: 327 YNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLTWPDRIK-TNLK-P-LDL 383
Query: 368 SKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKV 427
+++ +LTF P +P + LAY AG G VL+A+NE A +F++ KI Y DI +
Sbjct: 384 AQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIANNLFLNNKIKYFDISSI 443
Query: 428 VELTCDKHKADLVTSPS---LEDIIHYDAWAREYAAGL 462
+ + + V+ S ++ I+ +WA++ A +
Sbjct: 444 ISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDI 481
Score = 300 (110.7 bits), Expect = 1.5e-24, P = 1.5e-24
Identities = 69/166 (41%), Positives = 103/166 (62%)
Query: 77 KPISV--LGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131
KPI+V GSTGSIGT L+I+ E E+ F V AL ++ L +Q + F P+ + +
Sbjct: 76 KPINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCI 135
Query: 132 RNESLLDEIKEALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIE 190
++S+ +E+KE + N+++ KP IL G++G+ E +V GI GL T+ AI
Sbjct: 136 HDKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIM 195
Query: 191 AGKDIALANKETLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCI 235
K +ALANKE++++ G F+ L + H N KI+P DSEHSAIFQC+
Sbjct: 196 NNKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCL 241
>TIGR_CMR|ECH_0557 [details] [associations]
symbol:ECH_0557 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:205920 "Ehrlichia chaffeensis str.
Arkansas" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000236 GenomeReviews:CP000236_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 GO:GO:0030604
GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525 Pfam:PF13288
SUPFAM:SSF69055 TIGRFAMs:TIGR00243 ProtClustDB:PRK05447 OMA:LYDIPFD
RefSeq:YP_507369.1 ProteinModelPortal:Q2GGR4 STRING:Q2GGR4
GeneID:3927955 KEGG:ech:ECH_0557 PATRIC:20576580
BioCyc:ECHA205920:GJNR-559-MONOMER Uniprot:Q2GGR4
Length = 386
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 147/387 (37%), Positives = 216/387 (55%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +S+ GSTG+IG +DI+ DK++V L A SN+ LLA Q K + V + N L
Sbjct: 2 KTVSIFGSTGAIGQMIIDIIFADLDKYQVKVLVAKSNVQLLAFQAKLINAERVVIANVDL 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDI 195
E+K+ L K + AG+ G++ A D + IVG A L P I +G K I
Sbjct: 62 YQELKDLLVGTNIK--VSAGDSGMVMATSL-DVDYAMMAIVGMAALIPMTYLINSGIKVI 118
Query: 196 ALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAF 255
ALANKE+++ GG +L LA + N+ I+P DSEH+AI+Q + + L +I LTASGG
Sbjct: 119 ALANKESIVCGGTLLLSLAKEKNVNIVPVDSEHNAIYQILSSSKKN-LEKITLTASGGPL 177
Query: 256 RDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXX 315
+++K V V D +KHP W MGKKI+VDSAT+ NK LE+IEA+Y F + +
Sbjct: 178 LSMDYDQIKNVTVQDTVKHPIWKMGKKISVDSATMINKSLEIIEAYYFFSIKAEKLDIII 237
Query: 316 XXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTF 375
+V D + I + PDM++PI+YT+SWP+R S + +L+L+ LTF
Sbjct: 238 HPESIIHAIVSYVDGASIAFMSVPDMKIPIMYTLSWPDR---SAILCKKLNLASCNQLTF 294
Query: 376 VAPDTAKYPSVNLAYAAGRAGGTMTG--VLSAANEKAVEMFIDEKIGYLDIFKVVELTCD 433
+ PD K+P + L + + +L+AANE AV+ F+++KI +LDI VV T +
Sbjct: 295 IKPDVYKFPGIKLGFEVLKTSNVHANSIILNAANEVAVDAFLNKKIRFLDIVSVVCETLN 354
Query: 434 KHKADLVTSPSLEDIIHYDAWAREYAA 460
+ S L I+ D +R A+
Sbjct: 355 LVNYGRINS--LSSILDCDLVSRRVAS 379
>UNIPROTKB|P64012 [details] [associations]
symbol:dxr "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:1773 "Mycobacterium tuberculosis"
[GO:0000287 "magnesium ion binding" evidence=IDA] [GO:0030145
"manganese ion binding" evidence=IDA] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=IDA] [GO:0050897 "cobalt ion binding" evidence=IDA]
[GO:0051483 "terpenoid biosynthetic process,
mevalonate-independent" evidence=IMP] [GO:0051484 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway
involved in terpenoid biosynthetic process" evidence=IDA]
[GO:0070402 "NADPH binding" evidence=IDA] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR Gene3D:3.40.50.720 GO:GO:0000287
GO:GO:0030145 GO:GO:0050897 EMBL:BX842581 GO:GO:0070402
eggNOG:COG0743 KO:K00099 GO:GO:0030604 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
OMA:AHPNWVM ProtClustDB:PRK05447 HOGENOM:HOG000007221 PIR:A70923
RefSeq:NP_217386.2 RefSeq:NP_337449.2 RefSeq:YP_006516323.1
PDB:2C82 PDB:2JCV PDB:2JCX PDB:2JCY PDB:2JD0 PDB:2JD1 PDB:2JD2
PDB:2Y1C PDB:2Y1D PDB:2Y1E PDB:2Y1F PDB:2Y1G PDB:3RAS PDB:4A03
PDB:4AIC PDBsum:2C82 PDBsum:2JCV PDBsum:2JCX PDBsum:2JCY
PDBsum:2JD0 PDBsum:2JD1 PDBsum:2JD2 PDBsum:2Y1C PDBsum:2Y1D
PDBsum:2Y1E PDBsum:2Y1F PDBsum:2Y1G PDBsum:3RAS PDBsum:4A03
PDBsum:4AIC ProteinModelPortal:P64012 SMR:P64012 PRIDE:P64012
EnsemblBacteria:EBMYCT00000000352 EnsemblBacteria:EBMYCT00000071333
GeneID:13317662 GeneID:887800 GeneID:925338 KEGG:mtc:MT2938
KEGG:mtu:Rv2870c KEGG:mtv:RVBD_2870c PATRIC:18128232
TubercuList:Rv2870c BindingDB:P64012 ChEMBL:CHEMBL5630
EvolutionaryTrace:P64012 GO:GO:0051484 Uniprot:P64012
Length = 413
Score = 639 (230.0 bits), Expect = 1.4e-62, P = 1.4e-62
Identities = 156/388 (40%), Positives = 208/388 (53%)
Query: 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133
DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R + Q V N
Sbjct: 10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGG---AHLDTLLRQRAQT-GVTN 65
Query: 134 ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193
++ DE A V + P G +A V+ +VG GL+PT+AA++ G
Sbjct: 66 IAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGA 121
Query: 194 DIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGG 253
+ALANKE+L+AGG VL A +I+P DSEHSA+ QC++G + +++LTASGG
Sbjct: 122 RLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGG 179
Query: 254 AFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXX 313
FR W L+ V A HP WSMG T++SA+L NKGLEVIE H LFG YD
Sbjct: 180 PFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDV 239
Query: 314 XXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSL 373
MV D S I Q PDM+LPI + WP R+ + D S
Sbjct: 240 VVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA---CDFHTASSW 296
Query: 374 TFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCD 433
F DT +P+V LA AG AGG MT V +AANE+A F+ +IG+ I ++
Sbjct: 297 EFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVL- 355
Query: 434 KHKAD--LVTSPSLEDIIHYDAWAREYA 459
H AD V +++D++ WARE A
Sbjct: 356 -HAADQWAVEPATVDDVLDAQRWARERA 382
>TIGR_CMR|SO_1635 [details] [associations]
symbol:SO_1635 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:211586 "Shewanella oneidensis MR-1"
[GO:0008299 "isoprenoid biosynthetic process" evidence=ISS]
[GO:0008615 "pyridoxine biosynthetic process" evidence=ISS]
[GO:0009228 "thiamine biosynthetic process" evidence=ISS]
[GO:0016616 "oxidoreductase activity, acting on the CH-OH group of
donors, NAD or NADP as acceptor" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0070402 eggNOG:COG0743 KO:K00099
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243 OMA:AHPNWVM
ProtClustDB:PRK05447 HOGENOM:HOG000007221 RefSeq:NP_717246.1
ProteinModelPortal:Q8EGG9 SMR:Q8EGG9 GeneID:1169429
KEGG:son:SO_1635 PATRIC:23522904 Uniprot:Q8EGG9
Length = 396
Score = 631 (227.2 bits), Expect = 1.0e-61, P = 1.0e-61
Identities = 156/392 (39%), Positives = 209/392 (53%)
Query: 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEI 140
+LG+TGSIG TL +++ + +RV AL A +++ + +PQV + + +
Sbjct: 6 ILGATGSIGASTLSVISANPTAYRVYALVANASVDKMLTLCLAHRPQVAHMVDHKAALAL 65
Query: 141 KEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200
K L ++ +GE +I P TV+ IVG AGL PT+AA++AGK + LANK
Sbjct: 66 KAQLP-AALNIQVTSGEDELIALVTAPAVDTVMAAIVGAAGLVPTLAAVKAGKRVLLANK 124
Query: 201 ETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC----IQG------LPEGALRRIILTA 250
E L+ G + +LP DSEH+AIFQC +Q L + I+LT
Sbjct: 125 EALVMSGELFIEATRASGATLLPVDSEHNAIFQCLPEEVQSNLGRCDLAASGISHILLTG 184
Query: 251 SGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDN 310
SGG F + L + A A KHPNWSMG KI+VDSAT+ NKGLE IEA +LF + D
Sbjct: 185 SGGPFLTAELSNLAAMTPAQACKHPNWSMGPKISVDSATMMNKGLEFIEARWLFNTQKDQ 244
Query: 311 XXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKL 370
MV+ +D SVI Q+G PDMR PI + MS+P+RI P LD K+
Sbjct: 245 LKVVIHPQSVIHSMVQYRDGSVIAQMGNPDMRTPIAHCMSYPQRIRSG--VEP-LDFFKV 301
Query: 371 GSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVEL 430
G L+F PD ++P + LA A G T VL+AANE AVE F+ KIG+ I K+ E
Sbjct: 302 GQLSFCEPDFNRFPCLALAIEACSQGQEATTVLNAANEIAVEAFLQGKIGFTHIGKINE- 360
Query: 431 TCDKHKADLVTSPSLEDIIHYDAWAREYAAGL 462
C S+EDII DA R YA L
Sbjct: 361 DC-LLSVPKQAMASIEDIIALDAQTRIYAREL 391
>TIGR_CMR|APH_0440 [details] [associations]
symbol:APH_0440 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:212042 "Anaplasma phagocytophilum HZ"
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288 "isopentenyl
diphosphate biosynthetic process, mevalonate-independent pathway"
evidence=ISS] [GO:0030604 "1-deoxy-D-xylulose-5-phosphate
reductoisomerase activity" evidence=ISS] HAMAP:MF_00183
InterPro:IPR003821 InterPro:IPR013512 InterPro:IPR013644
Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205 UniPathway:UPA00056
InterPro:IPR016040 Gene3D:3.40.50.720 GO:GO:0046872 EMBL:CP000235
GenomeReviews:CP000235_GR GO:GO:0070402 eggNOG:COG0743 KO:K00099
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
ProtClustDB:PRK05447 RefSeq:YP_505043.1 ProteinModelPortal:Q2GKQ8
STRING:Q2GKQ8 GeneID:3930540 KEGG:aph:APH_0440 PATRIC:20949500
HOGENOM:HOG000007221 OMA:LYDIPFD BioCyc:APHA212042:GHPM-467-MONOMER
Uniprot:Q2GKQ8
Length = 385
Score = 598 (215.6 bits), Expect = 3.2e-58, P = 3.2e-58
Identities = 142/384 (36%), Positives = 217/384 (56%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +SV GSTG IG T+ I++ + + F+V+AL AGSN++LLA Q K ++ + +++
Sbjct: 2 KKVSVFGSTGFIGKTTVGILSGNTEDFKVIALVAGSNVSLLAQQAKLLNAEMAVIADDAQ 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-I 195
+E+K +L + + AG++ V+EAA T V I G L + IE+G I
Sbjct: 62 YEELKRSLHGSGIR--VAAGKEAVLEAAAL-SVDTAVMAITGIVALSAVMRLIESGVGTI 118
Query: 196 ALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI-QGLPEGALRRIILTASGGA 254
ALA+KE+++ GG + A K +I+P DSEH+A+F+ + QG + + I +TASGG
Sbjct: 119 ALASKESVVCGGVLLRDAACKSGTRIVPVDSEHNAVFRLLSQG--DNPYK-ITITASGGP 175
Query: 255 FRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXX 314
F W ++LK V + DAL HP W MGKKI+VDSAT+ NK LEV+EA YLF Y
Sbjct: 176 FLHWSHDQLKSVTIEDALVHPVWKMGKKISVDSATMMNKALEVLEASYLFELGYRKIDVV 235
Query: 315 XXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLT 374
+ QD + + PDM +PI++ + WP R E++ +DL G LT
Sbjct: 236 IHPESIVHALAFYQDGTSTALMSLPDMSIPILHALYWPHR---KEVSVREVDLIAYGKLT 292
Query: 375 FVAPDTAKYPSVNLAYAAGRAG--GTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTC 432
F+ PD ++P++ A+ ++ + V +AANE AVE F++ +I +L+I +V
Sbjct: 293 FIRPDFERFPALKAAFDILQSSERDVASIVFNAANEVAVESFLNSEITFLEIVNIVLHVM 352
Query: 433 DKHKADLVTSPSLEDIIHYDAWAR 456
+K V+S L DI+ YD R
Sbjct: 353 NKVPYGKVSS--LADIMEYDLLGR 374
>TIGR_CMR|NSE_0443 [details] [associations]
symbol:NSE_0443 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:222891 "Neorickettsia sennetsu str.
Miyayama" [GO:0005737 "cytoplasm" evidence=ISS] [GO:0019288
"isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 GO:GO:0016853 GO:GO:0070402 EMBL:CP000237
GenomeReviews:CP000237_GR eggNOG:COG0743 HOGENOM:HOG000007220
KO:K00099 GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877
PANTHER:PTHR30525 Pfam:PF13288 SUPFAM:SSF69055 ProtClustDB:PRK05447
RefSeq:YP_506328.1 ProteinModelPortal:Q2GDW8 STRING:Q2GDW8
GeneID:3931891 KEGG:nse:NSE_0443 PATRIC:22680939 OMA:RIGINNA
BioCyc:NSEN222891:GHFU-464-MONOMER Uniprot:Q2GDW8
Length = 389
Score = 472 (171.2 bits), Expect = 7.1e-45, P = 7.1e-45
Identities = 137/379 (36%), Positives = 196/379 (51%)
Query: 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES 135
K IS+LGSTGS+G Q++D+V+ + +V AL+ SN LL Q + PQ V V +ES
Sbjct: 2 KKISILGSTGSVGCQSVDVVSRFYSGTIKVDALSCNSNHALLIQQARLLSPQKVFVADES 61
Query: 136 LLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195
E+K AL + + E++ ++GV A D +V GI G A L P +AI G +
Sbjct: 62 SYKEVKTALGS--QNIEVIL-DRGVEIGAALCDNDMLVVGISGIAALNPIYSAISQGIKV 118
Query: 196 ALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAF 255
A +NKE+L+ GG +LP K I+P DSEH A+ + ++ P ++ I LTASGG F
Sbjct: 119 ATSNKESLVCGGSLLLPFVDK----IIPLDSEHHAVAKLLRSKPIMSVSGITLTASGGPF 174
Query: 256 RDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXX 315
+ EK + V VA AL HP W MGKK +VDSAT+ NK LEV+EAHYLF +
Sbjct: 175 --FRKEK-RNVTVACALAHPIWKMGKKNSVDSATMMNKVLEVVEAHYLFRIPKEKISVLI 231
Query: 316 XXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSW-PERIYCSELTWPRLDLSKLGSLT 374
MV+ D S + PDMR+ I ++ Y S T+ R+ L+ LT
Sbjct: 232 HPEALIHGMVDFLDGSQHAFISLPDMRIGINNALAGLVGGGYESTYTYGRVPLATR-KLT 290
Query: 375 FVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDK 434
F A ++ + G VLSA N+ AVE F+ K+ + I + DK
Sbjct: 291 FYAAKEEEFRVLKFL------GTDQEIVLSAVNDLAVEDFLAGKLDFHSIPDFISSGLDK 344
Query: 435 HKADLVTSPSLEDIIH-YD 452
+ + ++ D+ YD
Sbjct: 345 FQYNKADVKNIGDVFSIYD 363
>TIGR_CMR|CJE_1535 [details] [associations]
symbol:CJE_1535 "1-deoxy-D-xylulose 5-phosphate
reductoisomerase" species:195099 "Campylobacter jejuni RM1221"
[GO:0019288 "isopentenyl diphosphate biosynthetic process,
mevalonate-independent pathway" evidence=ISS] [GO:0030604
"1-deoxy-D-xylulose-5-phosphate reductoisomerase activity"
evidence=ISS] HAMAP:MF_00183 InterPro:IPR003821 InterPro:IPR013512
InterPro:IPR013644 Pfam:PF02670 Pfam:PF08436 PIRSF:PIRSF006205
UniPathway:UPA00056 InterPro:IPR016040 Gene3D:3.40.50.720
GO:GO:0046872 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0070402
eggNOG:COG0743 HOGENOM:HOG000007220 KO:K00099 OMA:FIDGSVM
GO:GO:0030604 GO:GO:0019288 InterPro:IPR026877 PANTHER:PTHR30525
Pfam:PF13288 SUPFAM:SSF69055 TIGRFAMs:TIGR00243
ProtClustDB:PRK05447 RefSeq:YP_179520.1 ProteinModelPortal:Q5HT65
STRING:Q5HT65 GeneID:3232163 KEGG:cjr:CJE1535 PATRIC:20044860
BioCyc:CJEJ195099:GJC0-1563-MONOMER Uniprot:Q5HT65
Length = 356
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 119/354 (33%), Positives = 184/354 (51%)
Query: 105 VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA 164
+ ALA G NI LL +Q+ RFKP+ VA+++ +K + G++G+ +
Sbjct: 25 ISALACGDNIALLNEQIARFKPKFVAIKDSKNKHLVKH--------DRVFIGQEGLEQIL 76
Query: 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPA 224
++ IVG AGLK T+ A E GK+IALANKE+L+ G F+ K LP
Sbjct: 77 TECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANKESLVVAGSFL------KGAKFLPV 130
Query: 225 DSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKIT 284
DSEH+A+ ++G + ++ +TASGGAF + ++ L +V + DALKHPNW+MG KIT
Sbjct: 131 DSEHAALKFLLEGKKN--IAKLYITASGGAFYKYKIKDLNQVSLKDALKHPNWNMGAKIT 188
Query: 285 VDSATLFNKGLEVIEAHYLFGAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLP 344
+DSAT+ NK E+IEA++L+ ++ M E ++ + DM+L
Sbjct: 189 IDSATMANKLFEIIEAYHLY--DFKEIDALIEPRSLVHAMCEFKNGASTAYFSKADMKLA 246
Query: 345 IIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLS 404
I + + E +D SK+ +L F T KYP L + + +++
Sbjct: 247 ISDAIFEKQDTPILEA----VDFSKMPALKFHPISTKKYPIFKLKNTFLKEPN-LGVIIN 301
Query: 405 AANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREY 458
AANE V F++ K G+LDI K + D ++S +E++ YD REY
Sbjct: 302 AANEVGVYNFLENKSGFLDIAKCIFKALDHFGVPKISS--IEEVFEYDFKTREY 353
Score = 225 (84.3 bits), Expect = 2.5e-16, P = 2.5e-16
Identities = 58/157 (36%), Positives = 84/157 (53%)
Query: 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEI 140
+ GSTGSIG L + A + ALA G NI LL +Q+ RFKP+ VA+++ +
Sbjct: 3 LFGSTGSIGVNALKLAALKN--IPISALACGDNIALLNEQIARFKPKFVAIKDSKNKHLV 60
Query: 141 KEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANK 200
K + G++G+ + ++ IVG AGLK T+ A E GK+IALANK
Sbjct: 61 KH--------DRVFIGQEGLEQILTECQDKLLLNAIVGFAGLKSTLKAKELGKNIALANK 112
Query: 201 ETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQG 237
E+L+ G F+ K LP DSEH+A+ ++G
Sbjct: 113 ESLVVAGSFL------KGAKFLPVDSEHAALKFLLEG 143
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.317 0.134 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 473 460 0.00095 118 3 11 22 0.41 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 18
No. of states in DFA: 617 (66 KB)
Total size of DFA: 265 KB (2140 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 38.20u 0.11s 38.31t Elapsed: 00:00:02
Total cpu time: 38.21u 0.11s 38.32t Elapsed: 00:00:02
Start: Tue May 21 04:55:23 2013 End: Tue May 21 04:55:25 2013