BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012004
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R0K|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|C Chain C, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0K|D Chain D, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase From Zymomonas Mobilis
pdb|1R0L|A Chain A, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|B Chain B, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|C Chain C, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
pdb|1R0L|D Chain D, 1-Deoxy-D-Xylulose 5-Phosphate Reductoisomerase From
Zymomonas Mobilis In Complex With Nadph
Length = 388
Score = 307 bits (787), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 169/390 (43%), Positives = 239/390 (61%), Gaps = 8/390 (2%)
Query: 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES 135
P+ ++VLG+TGSIG TLD++ + D+++V+AL A N+ LAD KR + + + S
Sbjct: 4 PRTVTVLGATGSIGHSTLDLIERNLDRYQVIALTANRNVKDLADAAKRTNAKRAVIADPS 63
Query: 136 LLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195
L +++KEALA E AG ++EAA A + I+GCAGLK T+AAI GK +
Sbjct: 64 LYNDLKEALAG--SSVEAAAGADALVEAAMM-GADWTMAAIIGCAGLKATLAAIRKGKTV 120
Query: 196 ALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAF 255
ALANKE+L++ G ++ +H +LP DSEH+AIFQC +RRII+TASGG F
Sbjct: 121 ALANKESLVSAGGLMIDAVREHGTTLLPVDSEHNAIFQCFPHHNRDYVRRIIITASGGPF 180
Query: 256 RDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXX 315
R + ++ V A++HPNWSMG KI++DSAT+ NKGLE+IEA +LF +
Sbjct: 181 RTTSLAEMATVTPERAVQHPNWSMGAKISIDSATMMNKGLELIEAFHLFQIPLEKFEILV 240
Query: 316 XXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTF 375
MVE D S++ Q+G PDMR PI +T++WP+R+ E LD +KL + F
Sbjct: 241 HPQSVIHSMVEYLDGSILAQIGSPDMRTPIGHTLAWPKRM---ETPAESLDFTKLRQMDF 297
Query: 376 VAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKH 435
APD ++P++ LA + ++GG V++AANE AV F+D+KIG+LDI K+VE T D +
Sbjct: 298 EAPDYERFPALTLAMESIKSGGARPAVMNAANEIAVAAFLDKKIGFLDIAKIVEKTLDHY 357
Query: 436 KADLVTSPSLEDIIHYDAWAREYAAGLQFS 465
T SLED+ D AR AA L S
Sbjct: 358 TP--ATPSSLEDVFAIDNEARIQAAALMES 385
>pdb|3AU8|A Chain A, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU8|B Chain B, Crystal Structure Of The Ternary Complex Of An Isomerase
pdb|3AU9|A Chain A, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AU9|B Chain B, Crystal Structure Of The Quaternary Complex-1 Of An
Isomerase
pdb|3AUA|A Chain A, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
pdb|3AUA|B Chain B, Crystal Structure Of The Quaternary Complex-2 Of An
Isomerase
Length = 488
Score = 286 bits (733), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 154/408 (37%), Positives = 238/408 (58%), Gaps = 24/408 (5%)
Query: 76 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVR 132
P +++ GSTGSIGT L+I+ E E+ F V AL ++ L +Q + F P+ + +
Sbjct: 77 PINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIH 136
Query: 133 NESLLDEIKEALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191
++S+ +E+KE + N+++ KP IL G++G+ E +V GI GL T+ AI
Sbjct: 137 DKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMN 196
Query: 192 GKDIALANKETLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCIQG---LPEGALR--- 244
K +ALANKE++++ G F+ L + H N KI+P DSEHSAIFQC+ L L+
Sbjct: 197 NKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVLKTKCLQDNF 256
Query: 245 -------RIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEV 297
+I L +SGG F++ +++LK V +ALKHP W MGKKIT+DSAT+ NKGLEV
Sbjct: 257 SKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEV 316
Query: 298 IEAHYLFGAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYC 357
IE H+LF +Y++ VE D SVI Q+ +PDM++PI+Y+++WP+RI
Sbjct: 317 IETHFLFDVDYNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLTWPDRI-- 374
Query: 358 SELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDE 417
+ LDL+++ +LTF P +P + LAY AG G VL+A+NE A +F++
Sbjct: 375 -KTNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIANNLFLNN 433
Query: 418 KIGYLDIFKVVELTCDKHKADLVTSPS---LEDIIHYDAWAREYAAGL 462
KI Y DI ++ + + V+ S ++ I+ +WA++ A +
Sbjct: 434 KIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDI 481
>pdb|4GAE|A Chain A, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
pdb|4GAE|B Chain B, Crystal Structure Of Plasmodium Dxr In Complex With A
Pyridine- Containing Inhibitor
Length = 426
Score = 285 bits (730), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 153/408 (37%), Positives = 238/408 (58%), Gaps = 24/408 (5%)
Query: 76 PKPISVLGSTGSIGTQTLDIVAEH---EDKFRVVALAAGSNITLLADQVKRFKPQVVAVR 132
P +++ GSTGSIGT L+I+ E E+ F V AL ++ L +Q + F P+ + +
Sbjct: 15 PINVAIFGSTGSIGTNALNIIRECNKIENVFNVKALYVNKSVNELYEQAREFLPEYLCIH 74
Query: 133 NESLLDEIKEALANVEE-KPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191
++S+ +E+KE + N+++ KP IL G++G+ E +V GI GL T+ AI
Sbjct: 75 DKSVYEELKELVKNIKDYKPIILCGDEGMKEICSSNSIDKIVIGIDSFQGLYSTMYAIMN 134
Query: 192 GKDIALANKETLIAGGPFVLPLAHKH-NIKILPADSEHSAIFQCIQG--------LPEG- 241
K +ALANKE++++ G F+ L + H N KI+P DSEHSAIFQC+ L +
Sbjct: 135 NKIVALANKESIVSAGFFLKKLLNIHKNAKIIPVDSEHSAIFQCLDNNKVIKTKCLQDNF 194
Query: 242 ----ALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEV 297
+ +I L +SGG F++ +++LK V +ALKHP W MGKKIT+DSAT+ NKGLEV
Sbjct: 195 SKINNINKIFLCSSGGPFQNLTMDELKNVTSENALKHPKWKMGKKITIDSATMMNKGLEV 254
Query: 298 IEAHYLFGAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYC 357
IE H+LF +Y++ VE D SVI Q+ +PDM++PI+Y+++WP+RI
Sbjct: 255 IETHFLFDVDYNDIEVIVHKECIIHSCVEFIDKSVISQMYYPDMQIPILYSLTWPDRI-- 312
Query: 358 SELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDE 417
+ LDL+++ +LTF P +P + LAY AG G VL+A+NE A +F++
Sbjct: 313 -KTNLKPLDLAQVSTLTFHKPSLEHFPCIKLAYQAGIKGNFYPTVLNASNEIANNLFLNN 371
Query: 418 KIGYLDIFKVVELTCDKHKADLVTSPS---LEDIIHYDAWAREYAAGL 462
KI Y DI ++ + + V+ S ++ I+ +WA++ A +
Sbjct: 372 KIKYFDISSIISQVLESFNSQKVSENSEDLMKQILQIHSWAKDKATDI 419
>pdb|1Q0L|A Chain A, Crystal Structure Of Dxr In Complex With Fosmidomycin
pdb|1Q0Q|A Chain A, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
pdb|1Q0Q|B Chain B, Crystal Structure Of Dxr In Complex With The Substrate 1-
Deoxy-D-Xylulose-5-Phosphate
Length = 406
Score = 280 bits (715), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 165/399 (41%), Positives = 223/399 (55%), Gaps = 23/399 (5%)
Query: 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE 134
G K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E
Sbjct: 8 GMKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDE 67
Query: 135 SLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194
+ +K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK
Sbjct: 68 ASAKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKT 127
Query: 195 IALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALR 244
I LANKE+L+ G + + ++LP DSEH+AIFQ + L + +
Sbjct: 128 ILLANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVV 187
Query: 245 RIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLF 304
I+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF
Sbjct: 188 SILLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLF 247
Query: 305 GAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPR 364
A MV QD SV+ QLG PDMR PI +TM+WP R+ P
Sbjct: 248 NASASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP- 304
Query: 365 LDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI 424
LD KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 305 LDFCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDI 364
Query: 425 ----FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 365 AALNLSVLE------KMDMREPQCVDDVLSVDANAREVA 397
>pdb|1K5H|A Chain A, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|B Chain B, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1K5H|C Chain C, 1-Deoxy-D-Xylulose-5-Phosphate Reductoisomerase
pdb|1ONN|A Chain A, Ispc Apo Structure
pdb|1ONN|B Chain B, Ispc Apo Structure
pdb|1ONO|A Chain A, Ispc Mn2+ Complex
pdb|1ONO|B Chain B, Ispc Mn2+ Complex
pdb|1ONP|A Chain A, Ispc Complex With Mn2+ And Fosmidomycin
pdb|1ONP|B Chain B, Ispc Complex With Mn2+ And Fosmidomycin
Length = 398
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 222/397 (55%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 62 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ + L + + I
Sbjct: 122 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 182 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 242 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 299 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 358
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 359 LNLSVLE------KMDMREPQCVDDVLSVDANAREVA 389
>pdb|3ANL|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANL|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Pyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANM|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
5-Phenylpyridin-2-Ylmethylphosphonic Acid
pdb|3ANN|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
pdb|3ANN|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With
Quinolin-2-Ylmethylphosphonic Acid
Length = 420
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 222/397 (55%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 12 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 71
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 72 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 131
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ + L + + I
Sbjct: 132 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 191
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 192 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 251
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 252 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 308
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 309 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 368
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 369 LNLSVLE------KMDMREPQCVDDVLSVDANAREVA 399
>pdb|2EGH|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
pdb|2EGH|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase Complexed With A Magnesium Ion, Nadph
And Fosmidomycin
Length = 424
Score = 278 bits (712), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 222/397 (55%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 12 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 71
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 72 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 131
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ + L + + I
Sbjct: 132 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 191
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 192 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 251
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 252 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 308
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 309 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 368
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 369 LNLSVLE------KMDMREPQCVDDVLSVDANAREVA 399
>pdb|3R0I|A Chain A, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
pdb|3R0I|B Chain B, Ispc In Complex With An N-Methyl-Substituted Hydroxamic
Acid
Length = 410
Score = 278 bits (711), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 222/397 (55%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 14 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 73
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 74 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 133
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ + L + + I
Sbjct: 134 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 193
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 194 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 253
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 254 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 310
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 311 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 370
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 371 LNLSVLE------KMDMREPQCVDDVLSVDANAREVA 401
>pdb|1T1R|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1R|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|A Chain A, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
pdb|1T1S|B Chain B, Crystal Structure Of The Reductoisomerase Complexed With A
Bisphosphonate
Length = 398
Score = 278 bits (711), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 164/397 (41%), Positives = 222/397 (55%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T + +Q F P+ + +E+
Sbjct: 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRMVEQCLEFSPRYAVMDDEAS 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V+ IVG AGL PT+AAI AGK I
Sbjct: 62 AKLLKTMLQQQGSRTEVLSGQQAACDMAALEDVDQVMAAIVGAAGLLPTLAAIRAGKTIL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + + ++LP DSEH+AIFQ + L + + I
Sbjct: 122 LANKESLVTCGRLFMDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L + A +HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 182 LLTGSGGPFRETPLRDLATMTPDQACRHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
MV QD SV+ QLG PDMR PI +TM+WP R+ P LD
Sbjct: 242 SASQMEVLIHPQSVIHSMVRYQDGSVLAQLGEPDMRTPIAHTMAWPNRVNSG--VKP-LD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 299 FCKLSALTFAAPDYDRYPCLKLAMEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 358
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D+ ++D++ DA ARE A
Sbjct: 359 LNLSVLE------KMDMREPQCVDDVLSVDANAREVA 389
>pdb|3IIE|A Chain A, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis.
pdb|3IIE|B Chain B, 1-deoxy-d-xylulose 5-phosphate Reductoisomerase From
Yersinia Pestis
Length = 401
Score = 266 bits (681), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 162/395 (41%), Positives = 223/395 (56%), Gaps = 17/395 (4%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TL +V + + F+V AL AG N+ +A Q F P+ A+ +E
Sbjct: 5 KQLTILGSTGSIGNSTLSVVRANPELFKVTALVAGRNVREMAQQCLEFSPRYAAMSDEHS 64
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
++ LA E+ +GE E A D V+ IVG AGL T+AAI AGK +
Sbjct: 65 AKSLRLLLAEQGSDTEVYSGETAACELAALDDVDQVMAAIVGIAGLPSTLAAIRAGKQVL 124
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+LI G + + ++LP DSEH+AIFQ + L E + RI
Sbjct: 125 LANKESLITCGKLFMDEVKRSRAQLLPIDSEHNAIFQSLPERIQRQLGYSSLNENGVSRI 184
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
ILT SGG FR+ P+ + +V A HPNWSMG+KI+VDSAT+ NKGLE IEA +LF A
Sbjct: 185 ILTGSGGPFRETPLSQFSDVTPDQACAHPNWSMGRKISVDSATMMNKGLEYIEARWLFNA 244
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
+ MV D S++ Q+G PDMR PI + M++P R+ S P LD
Sbjct: 245 SAEQIEVVLHPQSVIHSMVRYHDGSILAQMGTPDMRTPIAHAMAYPMRV--SSGVAP-LD 301
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFK 426
K+G+LTF PD +YP + LA A AG T L+AANE +V F+D KI + DI +
Sbjct: 302 FCKVGALTFTTPDYQRYPCLKLAIDACNAGQAATTALNAANEISVMAFLDSKIRFTDI-E 360
Query: 427 VVELTCDKHKADLVTSP-SLEDIIHYDAWAREYAA 460
V+ T + L++ P S+E+++ D AR+ AA
Sbjct: 361 VINRTV--VEGLLLSEPTSVEEVLVIDRKARDVAA 393
>pdb|1Q0H|A Chain A, Crystal Structure Of Selenomethionine-Labelled Dxr In
Complex With Fosmidomycin
Length = 406
Score = 260 bits (665), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 162/399 (40%), Positives = 213/399 (53%), Gaps = 23/399 (5%)
Query: 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE 134
G K +++LGSTGSIG TLD+V + + FRVVAL AG N+T +Q F P+ +E
Sbjct: 8 GXKQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRXVEQCLEFSPRYAVXDDE 67
Query: 135 SLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194
+ +K L + E+L+G+Q + A D V IVG AGL PT+AAI AGK
Sbjct: 68 ASAKLLKTXLQQQGSRTEVLSGQQAACDXAALEDVDQVXAAIVGAAGLLPTLAAIRAGKT 127
Query: 195 IALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALR 244
I LANKE+L+ G + ++LP DSEH+AIFQ + L + +
Sbjct: 128 ILLANKESLVTCGRLFXDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVV 187
Query: 245 RIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLF 304
I+LT SGG FR+ P+ L A +HPNWS G+KI+VDSAT NKGLE IEA +LF
Sbjct: 188 SILLTGSGGPFRETPLRDLATXTPDQACRHPNWSXGRKISVDSATXXNKGLEYIEARWLF 247
Query: 305 GAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPR 364
A V QD SV+ QLG PD R PI +T +WP R+ P
Sbjct: 248 NASASQXEVLIHPQSVIHSXVRYQDGSVLAQLGEPDXRTPIAHTXAWPNRVNSG--VKP- 304
Query: 365 LDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI 424
LD KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 305 LDFCKLSALTFAAPDYDRYPCLKLAXEAFEQGQAATTALNAANEITVAAFLAQQIRFTDI 364
Query: 425 ----FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D ++D++ DA ARE A
Sbjct: 365 AALNLSVLE------KXDXREPQCVDDVLSVDANAREVA 397
>pdb|1JVS|A Chain A, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
pdb|1JVS|B Chain B, Crystal Structure Of 1-deoxy-d-xylulose 5-phosphate
Reductoisomerase; A Target Enzyme For Antimalarial Drugs
Length = 400
Score = 259 bits (661), Expect = 3e-69, Method: Compositional matrix adjust.
Identities = 161/397 (40%), Positives = 212/397 (53%), Gaps = 23/397 (5%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
K +++LGSTGSIG TLD+V + + FRVVAL AG N+T +Q F P+ +E+
Sbjct: 2 KQLTILGSTGSIGCSTLDVVRHNPEHFRVVALVAGKNVTRXVEQCLEFSPRYAVXDDEAS 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
+K L + E+L+G+Q + A D V IVG AGL PT+AAI AGK I
Sbjct: 62 AKLLKTXLQQQGSRTEVLSGQQAACDXAALEDVDQVXAAIVGAAGLLPTLAAIRAGKTIL 121
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI----------QGLPEGALRRI 246
LANKE+L+ G + ++LP DSEH+AIFQ + L + + I
Sbjct: 122 LANKESLVTCGRLFXDAVKQSKAQLLPVDSEHNAIFQSLPQPIQHNLGYADLEQNGVVSI 181
Query: 247 ILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGA 306
+LT SGG FR+ P+ L A +HPNWS G+KI+VDSAT NKGLE IEA +LF A
Sbjct: 182 LLTGSGGPFRETPLRDLATXTPDQACRHPNWSXGRKISVDSATXXNKGLEYIEARWLFNA 241
Query: 307 EYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLD 366
V QD SV+ QLG PD R PI +T +WP R+ P LD
Sbjct: 242 SASQXEVLIHPQSVIHSXVRYQDGSVLAQLGEPDXRTPIAHTXAWPNRVNSG--VKP-LD 298
Query: 367 LSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI-- 424
KL +LTF APD +YP + LA A G T L+AANE V F+ ++I + DI
Sbjct: 299 FCKLSALTFAAPDYDRYPCLKLAXEAFEQGQAATTALNAANEITVAAFLAQQIRFTDIAA 358
Query: 425 --FKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459
V+E K D ++D++ DA ARE A
Sbjct: 359 LNLSVLE------KXDXREPQCVDDVLSVDANAREVA 389
>pdb|2JCV|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCV|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JD1|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD1|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese And Nadph
pdb|2JD2|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|2JD2|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese
pdb|3RAS|A Chain A, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|3RAS|B Chain B, Crystal Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase (Dxr) Complexed With A Lipophilic
Phosphonate Inhibitor
pdb|2Y1C|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1C|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1D|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1D|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue And Manganese.
pdb|2Y1E|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1E|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Manganese.
pdb|2Y1F|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1F|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fosmidomycin Analogue, Manganese And Nadph.
pdb|2Y1G|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|2Y1G|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With A 3,4-Dichlorophenyl-
Substituted Fr900098 Analogue And Manganese.
pdb|4A03|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4A03|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Dxr In
Complex With The Antibiotic Fr900098 And Cofactor Nadph
pdb|4AIC|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
pdb|4AIC|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin, Manganese
And Nadph
Length = 398
Score = 234 bits (596), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 158/397 (39%), Positives = 211/397 (53%), Gaps = 17/397 (4%)
Query: 65 VTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124
VT + DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R
Sbjct: 10 VTNSTDGRADGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHL---DTLLRQ 66
Query: 125 KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKP 184
+ Q V N ++ DE A V + P G +A V+ +VG GL+P
Sbjct: 67 RAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRP 121
Query: 185 TVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALR 244
T+AA++ G +ALANKE+L+AGG VL A +I+P DSEHSA+ QC++G +
Sbjct: 122 TLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLRGGTPDEVA 179
Query: 245 RIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLF 304
+++LTASGG FR W L+ V A HP WSMG T++SA+L NKGLEVIE H LF
Sbjct: 180 KLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLF 239
Query: 305 GAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPR 364
G YD MV D S I Q PDM+LPI + WP R+ +
Sbjct: 240 GIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA--- 296
Query: 365 LDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI 424
D S F DT +P+V LA AG AGG MT V +AANE+A F+ +IG+ I
Sbjct: 297 CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAI 356
Query: 425 FKVVELTCDKHKAD--LVTSPSLEDIIHYDAWAREYA 459
++ H AD V +++D++ WARE A
Sbjct: 357 VGIIADVL--HAADQWAVEPATVDDVLDAQRWARERA 391
>pdb|2C82|A Chain A, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2C82|B Chain B, X-Ray Structure Of 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
Length = 413
Score = 233 bits (595), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 156/388 (40%), Positives = 208/388 (53%), Gaps = 17/388 (4%)
Query: 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133
DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R + Q V N
Sbjct: 10 DGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHL---DTLLRQRAQT-GVTN 65
Query: 134 ESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193
++ DE A V + P G +A V+ +VG GL+PT+AA++ G
Sbjct: 66 IAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRPTLAALKTGA 121
Query: 194 DIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGG 253
+ALANKE+L+AGG VL A +I+P DSEHSA+ QC++G + +++LTASGG
Sbjct: 122 RLALANKESLVAGGSLVLRAARPG--QIVPVDSEHSALAQCLRGGTPDEVAKLVLTASGG 179
Query: 254 AFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXX 313
FR W L+ V A HP WSMG T++SA+L NKGLEVIE H LFG YD
Sbjct: 180 PFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLEVIETHLLFGIPYDRIDV 239
Query: 314 XXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSL 373
MV D S I Q PDM+LPI + WP R+ + D S
Sbjct: 240 VVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA---CDFHTASSW 296
Query: 374 TFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCD 433
F DT +P+V LA AG AGG MT V +AANE+A F+ +IG+ I ++
Sbjct: 297 EFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAIVGIIADVL- 355
Query: 434 KHKAD--LVTSPSLEDIIHYDAWAREYA 459
H AD V +++D++ WARE A
Sbjct: 356 -HAADQWAVEPATVDDVLDAQRWARERA 382
>pdb|2JCX|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCX|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Fosmidomycin And Nadph
pdb|2JCY|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JCY|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis
pdb|2JD0|A Chain A, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
pdb|2JD0|B Chain B, X-Ray Structure Of Mutant 1-Deoxy-D-Xylulose 5-Phosphate
Reductoisomerase, Dxr, Rv2870c, From Mycobacterium
Tuberculosis, In Complex With Nadph
Length = 398
Score = 231 bits (590), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 156/397 (39%), Positives = 211/397 (53%), Gaps = 17/397 (4%)
Query: 65 VTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124
VT + DG + VLGSTGSIGTQ L ++A++ D+F VV LAAG D + R
Sbjct: 10 VTNSTDGRADGRLRVVVLGSTGSIGTQALQVIADNPDRFEVVGLAAGGAHL---DTLLRQ 66
Query: 125 KPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKP 184
+ Q V N ++ DE A V + P G +A V+ +VG GL+P
Sbjct: 67 RAQT-GVTNIAVADE--HAAQRVGDIP--YHGSDAATRLVEQTEADVVLNALVGALGLRP 121
Query: 185 TVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALR 244
T+AA++ G +ALANKE+L+AGG VL A +I+P +SEHSA+ QC++G +
Sbjct: 122 TLAALKTGARLALANKESLVAGGSLVLRAARPG--QIVPVNSEHSALAQCLRGGTPDEVA 179
Query: 245 RIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLF 304
+++LTASGG FR W L+ V A HP WSMG T++SA+L NKGL+VIE H LF
Sbjct: 180 KLVLTASGGPFRGWSAADLEHVTPEQAGAHPTWSMGPMNTLNSASLVNKGLQVIETHLLF 239
Query: 305 GAEYDNXXXXXXXXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPR 364
G YD MV D S I Q PDM+LPI + WP R+ +
Sbjct: 240 GIPYDRIDVVVHPQSIIHSMVTFIDGSTIAQASPPDMKLPISLALGWPRRVSGAAAA--- 296
Query: 365 LDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDI 424
D S F DT +P+V LA AG AGG MT V +AANE+A F+ +IG+ I
Sbjct: 297 CDFHTASSWEFEPLDTDVFPAVELARQAGVAGGCMTAVYNAANEEAAAAFLAGRIGFPAI 356
Query: 425 FKVVELTCDKHKAD--LVTSPSLEDIIHYDAWAREYA 459
++ H AD V +++D++ WARE A
Sbjct: 357 VGIIADVL--HAADQWAVEPATVDDVLDAQRWARERA 391
>pdb|3A06|A Chain A, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A06|B Chain B, Crystal Structure Of Dxr From Thermooga Maritia, In
Complex Fosmidomycin And Nadph
pdb|3A14|A Chain A, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
pdb|3A14|B Chain B, Crystal Structure Of Dxr From Thermotoga Maritima, In
Comple Nadph
Length = 376
Score = 192 bits (488), Expect = 3e-49, Method: Compositional matrix adjust.
Identities = 129/379 (34%), Positives = 207/379 (54%), Gaps = 24/379 (6%)
Query: 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL 136
+ + +LG+TGSIGTQTLD++ + + R++ ++ SN+ L VK F + VA+ +
Sbjct: 4 RTLVILGATGSIGTQTLDVLKKVKG-IRLIGISFHSNLELAFKIVKEFNVKNVAITGDV- 61
Query: 137 LDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196
E +++ NV + + + ++EA + PD V + G +GL+ +A++E K +
Sbjct: 62 --EFEDSSINVWKGSHSI---EEMLEALK-PDITMV--AVSGFSGLRAVLASLEHSKRVC 113
Query: 197 LANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFR 256
LANKE+L+ GG V + +++P DSEHSAIFQ ++ PE + +++LTASGGA R
Sbjct: 114 LANKESLVCGGFLVKKKLKEKGTELIPVDSEHSAIFQVME--PE--VEKVVLTASGGALR 169
Query: 257 DWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNXXXXXX 316
DW + K+ + D LKHP W+MG +ITVDSAT+ NK EV+EA LF ++
Sbjct: 170 DWKISKIDRARPEDVLKHPVWNMGARITVDSATMVNKAFEVLEAMELFELPFEKIEVKIH 229
Query: 317 XXXXXXXMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFV 376
V D +V + PDMR+PI Y + +P R+ + SL+F
Sbjct: 230 REGLVHGAVVLPDGNVKMVVSPPDMRIPISYALFYPRRVALEPF------FLRTISLSFE 283
Query: 377 APDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHK 436
PD KYP+ L + T +AA+E AVE F+ +I + I +V+E T ++ +
Sbjct: 284 DPDPEKYPAFFLLKEIKDSYALRTA-FNAADEVAVEAFLKGRIRFGGIHRVIEKTLEEFQ 342
Query: 437 ADLVTSPSLEDI--IHYDA 453
+L+D+ IH++A
Sbjct: 343 G-YPQPRTLDDVERIHFEA 360
>pdb|1T0Q|C Chain C, Structure Of The Toluene/o-xylene Monooxygenase
Hydroxylase
pdb|1T0R|C Chain C, Crystal Structure Of The TolueneO-Xylene Monooxygenase
Hydroxuylase From Pseudomonas Stutzeri-Azide Bound
pdb|1T0S|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
With 4- Bromophenol Bound
pdb|2RDB|C Chain C, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase I100w Mutant
pdb|3N1X|C Chain C, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201c Mutant
pdb|3N1Y|C Chain C, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201g Mutant
pdb|3N1Z|C Chain C, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201s Mutant
pdb|3N20|C Chain C, X-Ray Crystal Structure Of TolueneO-Xylene Monooxygenase
Hydroxylase T201v Mutant
pdb|3RN9|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sL272E DOUBLE MUTANT
pdb|3RNA|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100W DOUBLE MUTANT
pdb|3RNB|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sF176W DOUBLE MUTANT
pdb|3RNC|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI100A DOUBLE MUTANT
pdb|3RNE|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sI276E DOUBLE MUTANT
pdb|3RNF|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sV271A DOUBLE MUTANT
pdb|3RNG|C Chain C, Structure Of The TolueneO-Xylene Monooxygenase Hydroxylase
T201sW167E DOUBLE MUTANT
Length = 86
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 116 LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTG 175
++++ + F Q+V V E +D++ E A + + ++ RH D G
Sbjct: 6 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRG 65
Query: 176 -IVGCAGLKPT 185
IV AGL+PT
Sbjct: 66 MIVSDAGLRPT 76
>pdb|2INC|C Chain C, Native TolueneO-Xylene Monooxygenase Hydroxylase X-Ray
Crystal Structure
pdb|2IND|C Chain C, Mn(Ii) Reconstituted TolueneO-Xylene Monooxygenase
Hydroxylase X-Ray Crystal Structure
Length = 83
Score = 30.0 bits (66), Expect = 3.3, Method: Composition-based stats.
Identities = 19/71 (26%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
Query: 116 LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTG 175
++++ + F Q+V V E +D++ E A + + ++ RH D G
Sbjct: 4 IMSNFERDFVIQLVPVDTEDTMDQVAEKCAYHSINRRVHPQPEKILRVRRHEDGTLFPRG 63
Query: 176 -IVGCAGLKPT 185
IV AGL+PT
Sbjct: 64 MIVSDAGLRPT 74
>pdb|1I7Q|B Chain B, Anthranilate Synthase From S. Marcescens
pdb|1I7Q|D Chain D, Anthranilate Synthase From S. Marcescens
pdb|1I7S|B Chain B, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
pdb|1I7S|D Chain D, Anthranilate Synthase From Serratia Marcescens In Complex
With Its End Product Inhibitor L-Tryptophan
Length = 193
Score = 29.6 bits (65), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 63/134 (47%), Gaps = 18/134 (13%)
Query: 117 LADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV-IEAARHPDAVTVVTG 175
L DQ++ QVV RN+ + I E L ++E+ +L+ G EA P+ + + G
Sbjct: 17 LVDQLRASGHQVVIYRNQIGAEVIIERLQHMEQPVLMLSPGPGTPSEAGCMPELLQRLRG 76
Query: 176 ---IVG-CAGLKPTVAA----------IEAGKDIALANK-ETLIAGGPFVLPLAHKHNI- 219
I+G C G + V A I GK A+A+ E + AG LP+A H++
Sbjct: 77 QLPIIGICLGHQAIVEAYGGQVGQAGEILHGKASAIAHDGEGMFAGMANPLPVARYHSLV 136
Query: 220 -KILPADSEHSAIF 232
+PAD +A F
Sbjct: 137 GSNIPADLTVNARF 150
>pdb|1YS4|A Chain A, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
pdb|1YS4|B Chain B, Structure Of Aspartate-Semialdehyde Dehydrogenase From
Methanococcus Jannaschii
Length = 354
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 1/32 (3%)
Query: 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110
+ VLG+TGS+G + + ++A+H F + ALAA
Sbjct: 11 VGVLGATGSVGQRFVQLLADHP-XFELTALAA 41
>pdb|3UTE|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTE|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Sulfate Complex
pdb|3UTF|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTF|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase In Reduced State
pdb|3UTG|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTG|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Udp In Reduced
State
pdb|3UTH|A Chain A, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|B Chain B, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|C Chain C, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|3UTH|D Chain D, Crystal Structure Of Aspergillus Fumigatus Udp
Galactopyranose Mutase Complexed With Substrate Udp-Galp
In Reduced State
pdb|4GDC|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDC|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadph
pdb|4GDD|A Chain A, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|B Chain B, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|C Chain C, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDD|D Chain D, Crystal Strucure Of Oxidized Aspergillus Fumigatus
Udp-Galactopyranose Mutase Complexed With Nadh
pdb|4GDE|A Chain A, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|B Chain B, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|C Chain C, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
pdb|4GDE|D Chain D, Crystal Strucure Of Nadph-Reduced Aspergillus Fumigatus
Udp- Galactopyranose
Length = 513
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 105 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 159
Query: 271 ALKHP 275
P
Sbjct: 160 LFMRP 164
>pdb|3UKP|A Chain A, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|B Chain B, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|C Chain C, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|D Chain D, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|E Chain E, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|F Chain F, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|G Chain G, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKP|H Chain H, Crystal Structure Of R327a Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 509
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 101 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 155
Query: 271 ALKHP 275
P
Sbjct: 156 LFMRP 160
>pdb|3UKQ|A Chain A, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|B Chain B, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|C Chain C, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKQ|D Chain D, Crystal Structure Of R327k Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 510
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 101 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 155
Query: 271 ALKHP 275
P
Sbjct: 156 LFMRP 160
>pdb|3UKK|A Chain A, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|B Chain B, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|C Chain C, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
pdb|3UKK|D Chain D, Crystal Structure Of R182k-Udp-Galactopuranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
Length = 517
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 101 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 155
Query: 271 ALKHP 275
P
Sbjct: 156 LFMRP 160
>pdb|3UKL|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
pdb|3UKL|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udp
Length = 510
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 101 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 155
Query: 271 ALKHP 275
P
Sbjct: 156 LFMRP 160
>pdb|3UKH|A Chain A, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|B Chain B, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|C Chain C, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|D Chain D, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|E Chain E, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|F Chain F, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|G Chain G, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
pdb|3UKH|H Chain H, Crystal Structure Of Udp-Galactopyranose Mutase From
Aspergillus Fumigatus In Complex With Udpgalp
(Non-Reduced)
Length = 519
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 16/65 (24%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 211 LPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVAD 270
+P ++NI +LP + + +CI G+ + AL + F +W V ++ +AD
Sbjct: 101 VPYPFQNNISMLPKEEQ----VKCIDGMIDAALEARVANTKPKTFDEWIV-RMMGTGIAD 155
Query: 271 ALKHP 275
P
Sbjct: 156 LFMRP 160
>pdb|3TX1|A Chain A, X-Ray Crystal Structure Of Listeria Monocytogenes Egd-E
Udp-N- Acetylenolpyruvylglucosamine Reductase (Murb)
Length = 322
Score = 28.9 bits (63), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 23/84 (27%), Positives = 34/84 (40%), Gaps = 13/84 (15%)
Query: 99 HEDKFRVVALAAGSNITL-------------LADQVKRFKPQVVAVRNESLLDEIKEALA 145
H++K + L GSN+ + L ++R Q+VA+ L+D K AL
Sbjct: 75 HQNKIPLTILGNGSNLIIKDGGIRGVILHLDLLQTIERNNTQIVAMSGAKLIDTAKFALN 134
Query: 146 NVEEKPEILAGEQGVIEAARHPDA 169
E G G I A H +A
Sbjct: 135 ESLSGLEFACGIPGSIGGALHMNA 158
>pdb|1MKH|A Chain A, C-Terminal Domain Of Methionyl-Trna Synthetase From
Pyrococcus Abyssi
Length = 107
Score = 28.1 bits (61), Expect = 10.0, Method: Composition-based stats.
Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 8/74 (10%)
Query: 101 DKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQG 159
DK VV + G + TL+A K +KP E LL+ +AN+E K G QG
Sbjct: 28 DKLYVVKVDLGDEVRTLVAGLKKYYKP-------EELLNRYVVVVANLEPKKLRGIGSQG 80
Query: 160 VIEAARHPDAVTVV 173
++ AA + V ++
Sbjct: 81 MLLAADDGERVALL 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.398
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,749,500
Number of Sequences: 62578
Number of extensions: 561196
Number of successful extensions: 2063
Number of sequences better than 100.0: 39
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 2000
Number of HSP's gapped (non-prelim): 39
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 53 (25.0 bits)