Query 012004
Match_columns 473
No_of_seqs 194 out of 1055
Neff 4.3
Searched_HMMs 46136
Date Fri Mar 29 07:36:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012004.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012004hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02696 1-deoxy-D-xylulose-5- 100.0 5E-169 1E-173 1308.7 43.0 446 27-473 4-454 (454)
2 COG0743 Dxr 1-deoxy-D-xylulose 100.0 4E-164 9E-169 1237.7 35.2 382 76-465 1-382 (385)
3 TIGR00243 Dxr 1-deoxy-D-xylulo 100.0 3E-162 7E-167 1237.8 38.9 385 76-465 1-386 (389)
4 PRK12464 1-deoxy-D-xylulose 5- 100.0 1E-160 3E-165 1224.6 37.6 378 81-465 1-378 (383)
5 PRK05447 1-deoxy-D-xylulose 5- 100.0 1E-151 2E-156 1162.6 39.4 383 76-466 1-383 (385)
6 PF08436 DXP_redisom_C: 1-deox 100.0 4.7E-57 1E-61 374.3 2.7 84 221-304 1-84 (84)
7 PF02670 DXP_reductoisom: 1-de 100.0 8.6E-47 1.9E-51 337.8 12.5 129 79-207 1-129 (129)
8 PF13288 DXPR_C: DXP reductois 100.0 4.8E-45 1E-49 322.9 6.4 121 336-459 1-121 (121)
9 PRK06349 homoserine dehydrogen 98.2 6.7E-06 1.4E-10 86.7 9.5 159 76-273 3-181 (426)
10 PF03447 NAD_binding_3: Homose 97.9 2.8E-06 6.1E-11 73.3 0.3 110 84-222 1-115 (117)
11 PRK06270 homoserine dehydrogen 97.9 6.8E-05 1.5E-09 76.9 9.9 211 76-317 2-248 (341)
12 PRK11579 putative oxidoreducta 97.8 0.0018 4E-08 65.7 19.0 209 77-338 5-229 (346)
13 PRK13303 L-aspartate dehydroge 97.7 0.00021 4.5E-09 70.9 10.6 145 76-254 1-148 (265)
14 PRK13302 putative L-aspartate 97.7 0.00044 9.5E-09 69.0 11.8 143 75-251 5-148 (271)
15 COG1748 LYS9 Saccharopine dehy 97.5 0.00095 2E-08 70.5 11.7 218 76-331 1-230 (389)
16 PRK08374 homoserine dehydrogen 97.5 0.00068 1.5E-08 69.8 10.4 122 76-222 2-145 (336)
17 PF01408 GFO_IDH_MocA: Oxidore 97.4 0.0015 3.2E-08 55.5 10.3 90 78-197 2-91 (120)
18 PRK06392 homoserine dehydrogen 97.4 0.001 2.2E-08 68.5 10.5 202 78-309 2-230 (326)
19 PRK13304 L-aspartate dehydroge 97.4 0.0029 6.3E-08 62.8 13.0 145 77-254 2-148 (265)
20 PRK06813 homoserine dehydrogen 97.3 0.00038 8.2E-09 72.3 6.1 199 77-308 3-236 (346)
21 PLN02819 lysine-ketoglutarate 97.2 0.0098 2.1E-07 69.8 16.7 192 75-294 568-787 (1042)
22 TIGR03215 ac_ald_DH_ac acetald 97.1 0.008 1.7E-07 61.1 12.7 89 77-195 2-91 (285)
23 COG0673 MviM Predicted dehydro 97.0 0.0056 1.2E-07 60.8 10.6 211 75-334 2-233 (342)
24 PF03435 Saccharop_dh: Sacchar 97.0 0.0092 2E-07 61.4 12.3 146 79-253 1-157 (386)
25 PF01118 Semialdhyde_dh: Semia 96.8 0.0024 5.3E-08 55.8 5.5 35 78-113 1-35 (121)
26 PRK08300 acetaldehyde dehydrog 96.8 0.013 2.7E-07 60.3 11.3 163 76-268 4-177 (302)
27 PF13460 NAD_binding_10: NADH( 96.7 0.011 2.4E-07 53.2 9.6 37 79-119 1-37 (183)
28 TIGR01761 thiaz-red thiazoliny 96.7 0.0085 1.8E-07 62.3 9.4 127 76-236 3-131 (343)
29 PRK00436 argC N-acetyl-gamma-g 96.7 0.0037 8E-08 64.4 6.7 94 75-194 1-94 (343)
30 PRK10206 putative oxidoreducta 96.6 0.14 3E-06 52.6 17.4 205 77-336 2-222 (344)
31 PRK09466 metL bifunctional asp 96.5 0.0082 1.8E-07 68.7 9.1 215 77-320 459-703 (810)
32 COG0460 ThrA Homoserine dehydr 96.5 0.004 8.7E-08 64.7 5.9 121 76-221 3-135 (333)
33 PF05368 NmrA: NmrA-like famil 96.5 0.01 2.2E-07 56.1 8.0 194 79-299 1-222 (233)
34 PRK04207 glyceraldehyde-3-phos 96.4 0.017 3.8E-07 59.6 9.7 109 76-199 1-109 (341)
35 PRK09436 thrA bifunctional asp 96.0 0.021 4.6E-07 65.4 8.7 129 75-222 464-604 (819)
36 PRK00048 dihydrodipicolinate r 95.9 0.02 4.3E-07 56.7 6.7 91 76-199 1-91 (257)
37 TIGR01850 argC N-acetyl-gamma- 95.7 0.031 6.8E-07 57.8 7.8 33 77-110 1-33 (346)
38 COG4091 Predicted homoserine d 95.7 0.11 2.4E-06 54.9 11.5 156 70-235 11-170 (438)
39 TIGR00036 dapB dihydrodipicoli 95.6 0.066 1.4E-06 53.4 9.3 97 77-198 2-98 (266)
40 PLN02700 homoserine dehydrogen 95.3 0.13 2.8E-06 54.5 10.8 56 166-222 107-162 (377)
41 cd01078 NAD_bind_H4MPT_DH NADP 95.2 0.15 3.3E-06 47.6 9.8 44 77-124 29-72 (194)
42 PF01370 Epimerase: NAD depend 95.2 0.061 1.3E-06 49.7 7.1 123 79-258 1-123 (236)
43 TIGR01832 kduD 2-deoxy-D-gluco 95.1 0.21 4.6E-06 47.0 10.6 65 76-143 5-70 (248)
44 PRK08219 short chain dehydroge 95.0 0.12 2.7E-06 47.5 8.6 63 75-143 2-65 (227)
45 PLN02778 3,5-epimerase/4-reduc 94.8 0.11 2.3E-06 52.0 8.0 52 77-130 10-62 (298)
46 PLN02657 3,8-divinyl protochlo 94.8 0.28 6.1E-06 51.2 11.3 34 74-109 58-91 (390)
47 PRK11863 N-acetyl-gamma-glutam 94.8 0.044 9.5E-07 56.5 5.3 57 75-133 1-58 (313)
48 PRK08040 putative semialdehyde 94.7 0.064 1.4E-06 55.8 6.4 38 77-115 5-44 (336)
49 PLN02968 Probable N-acetyl-gam 94.7 0.036 7.8E-07 58.4 4.5 40 74-114 36-75 (381)
50 PRK06935 2-deoxy-D-gluconate 3 94.6 0.34 7.4E-06 46.2 10.6 66 76-143 15-81 (258)
51 PRK10538 malonic semialdehyde 94.6 0.34 7.4E-06 46.0 10.5 84 77-179 1-85 (248)
52 PF04321 RmlD_sub_bind: RmlD s 94.5 0.12 2.5E-06 51.6 7.4 54 77-132 1-58 (286)
53 PRK12829 short chain dehydroge 94.4 0.47 1E-05 44.8 11.0 83 76-177 11-95 (264)
54 PRK06947 glucose-1-dehydrogena 94.4 0.39 8.5E-06 45.2 10.4 65 75-142 1-69 (248)
55 PRK08267 short chain dehydroge 94.2 0.48 1E-05 45.1 10.8 87 76-181 1-89 (260)
56 PRK07806 short chain dehydroge 94.2 0.55 1.2E-05 44.2 11.0 66 76-143 6-74 (248)
57 PRK12825 fabG 3-ketoacyl-(acyl 94.2 0.57 1.2E-05 43.3 10.9 84 75-176 5-92 (249)
58 PRK06728 aspartate-semialdehyd 94.1 0.087 1.9E-06 55.1 5.9 36 77-113 6-44 (347)
59 TIGR01214 rmlD dTDP-4-dehydror 94.0 0.15 3.3E-06 49.2 6.9 31 78-110 1-31 (287)
60 PRK06101 short chain dehydroge 94.0 0.42 9E-06 45.3 9.7 65 76-144 1-65 (240)
61 PRK12828 short chain dehydroge 93.9 0.49 1.1E-05 43.7 9.8 82 76-177 7-91 (239)
62 PRK12742 oxidoreductase; Provi 93.9 0.48 1E-05 44.2 9.8 63 76-142 6-68 (237)
63 COG1086 Predicted nucleoside-d 93.9 0.21 4.5E-06 55.5 8.5 112 76-192 250-367 (588)
64 PRK13394 3-hydroxybutyrate deh 93.9 0.57 1.2E-05 44.2 10.3 67 76-144 7-75 (262)
65 PRK07060 short chain dehydroge 93.8 0.56 1.2E-05 43.8 10.2 62 77-143 10-71 (245)
66 PRK08063 enoyl-(acyl carrier p 93.8 0.44 9.6E-06 44.8 9.5 83 76-176 4-90 (250)
67 PRK05557 fabG 3-ketoacyl-(acyl 93.8 0.97 2.1E-05 41.9 11.5 66 75-143 4-73 (248)
68 PRK06482 short chain dehydroge 93.8 0.72 1.6E-05 44.4 11.1 64 76-143 2-66 (276)
69 PRK12743 oxidoreductase; Provi 93.8 0.52 1.1E-05 45.0 10.0 64 76-142 2-69 (256)
70 PLN00141 Tic62-NAD(P)-related 93.7 0.34 7.5E-06 46.5 8.8 38 76-117 17-54 (251)
71 PRK07024 short chain dehydroge 93.7 0.85 1.8E-05 43.6 11.4 45 76-124 2-46 (257)
72 PRK05653 fabG 3-ketoacyl-(acyl 93.6 0.95 2.1E-05 41.9 11.2 83 76-177 5-91 (246)
73 PRK08664 aspartate-semialdehyd 93.6 0.079 1.7E-06 54.7 4.4 33 75-108 2-34 (349)
74 PRK08263 short chain dehydroge 93.6 0.85 1.8E-05 44.1 11.2 48 76-127 3-50 (275)
75 PRK09186 flagellin modificatio 93.6 0.63 1.4E-05 43.9 10.1 82 76-176 4-91 (256)
76 TIGR03855 NAD_NadX aspartate d 93.5 0.8 1.7E-05 45.2 11.0 90 160-254 30-124 (229)
77 PLN02583 cinnamoyl-CoA reducta 93.5 0.47 1E-05 47.0 9.5 33 76-110 6-38 (297)
78 TIGR02622 CDP_4_6_dhtase CDP-g 93.5 0.44 9.5E-06 48.0 9.3 32 77-110 5-36 (349)
79 TIGR01851 argC_other N-acetyl- 93.5 0.22 4.8E-06 51.5 7.3 55 78-133 3-57 (310)
80 PRK12481 2-deoxy-D-gluconate 3 93.4 0.75 1.6E-05 44.1 10.4 65 76-143 8-73 (251)
81 PRK12823 benD 1,6-dihydroxycyc 93.4 0.67 1.5E-05 44.0 10.0 65 76-142 8-73 (260)
82 PRK07231 fabG 3-ketoacyl-(acyl 93.4 0.75 1.6E-05 43.0 10.2 82 76-176 5-89 (251)
83 PRK07825 short chain dehydroge 93.4 0.89 1.9E-05 43.7 10.9 80 76-175 5-85 (273)
84 PRK07523 gluconate 5-dehydroge 93.3 0.71 1.5E-05 43.8 10.1 82 76-176 10-95 (255)
85 PRK05717 oxidoreductase; Valid 93.2 0.88 1.9E-05 43.3 10.5 62 77-142 11-73 (255)
86 PRK06057 short chain dehydroge 93.2 0.8 1.7E-05 43.6 10.2 63 76-143 7-69 (255)
87 PRK08265 short chain dehydroge 93.2 0.87 1.9E-05 43.8 10.5 64 76-143 6-70 (261)
88 PRK08643 acetoin reductase; Va 93.2 0.88 1.9E-05 43.1 10.4 82 76-176 2-87 (256)
89 PRK06196 oxidoreductase; Provi 93.1 0.79 1.7E-05 45.6 10.5 63 76-142 26-88 (315)
90 PRK15181 Vi polysaccharide bio 93.1 0.12 2.6E-06 52.3 4.8 38 71-110 10-47 (348)
91 PRK09987 dTDP-4-dehydrorhamnos 93.1 0.23 5E-06 49.3 6.7 31 77-110 1-31 (299)
92 COG0604 Qor NADPH:quinone redu 93.1 0.57 1.2E-05 48.1 9.6 95 76-196 143-238 (326)
93 PRK08628 short chain dehydroge 93.1 0.83 1.8E-05 43.3 10.1 83 77-176 8-91 (258)
94 PRK08226 short chain dehydroge 93.1 0.85 1.8E-05 43.4 10.2 66 76-143 6-72 (263)
95 PRK06500 short chain dehydroge 93.0 1.1 2.4E-05 42.0 10.7 49 76-128 6-54 (249)
96 TIGR01181 dTDP_gluc_dehyt dTDP 92.9 0.3 6.5E-06 47.1 7.0 66 78-145 1-70 (317)
97 PRK12939 short chain dehydroge 92.9 1.1 2.4E-05 41.9 10.4 82 76-176 7-92 (250)
98 PRK05693 short chain dehydroge 92.8 1.1 2.4E-05 43.2 10.7 40 76-119 1-40 (274)
99 PRK07774 short chain dehydroge 92.8 0.97 2.1E-05 42.5 10.0 65 77-143 7-73 (250)
100 PRK09730 putative NAD(P)-bindi 92.7 0.94 2E-05 42.3 9.7 83 76-176 1-87 (247)
101 PRK07201 short chain dehydroge 92.7 0.53 1.1E-05 51.3 9.2 47 78-124 2-48 (657)
102 PRK06180 short chain dehydroge 92.7 1.2 2.7E-05 43.1 10.9 64 76-143 4-68 (277)
103 PRK07454 short chain dehydroge 92.6 1.4 3.1E-05 41.3 11.0 44 75-122 5-48 (241)
104 PRK07035 short chain dehydroge 92.6 1.1 2.3E-05 42.5 10.1 43 77-123 9-51 (252)
105 PRK06182 short chain dehydroge 92.6 1.2 2.6E-05 42.9 10.6 84 76-181 3-86 (273)
106 CHL00194 ycf39 Ycf39; Provisio 92.6 0.57 1.2E-05 46.7 8.7 30 78-109 2-31 (317)
107 PRK12745 3-ketoacyl-(acyl-carr 92.6 1.3 2.7E-05 41.9 10.5 32 76-109 2-33 (256)
108 PLN02260 probable rhamnose bio 92.6 0.54 1.2E-05 52.1 9.2 35 76-110 6-40 (668)
109 cd05294 LDH-like_MDH_nadp A la 92.5 0.31 6.7E-06 49.7 6.8 49 77-125 1-49 (309)
110 PRK07067 sorbitol dehydrogenas 92.5 1.3 2.8E-05 42.1 10.6 64 76-143 6-70 (257)
111 PRK08993 2-deoxy-D-gluconate 3 92.5 1.2 2.6E-05 42.6 10.4 65 76-143 10-75 (253)
112 PLN02695 GDP-D-mannose-3',5'-e 92.5 0.18 3.9E-06 51.9 5.2 33 77-111 22-54 (370)
113 PRK08589 short chain dehydroge 92.5 1 2.2E-05 43.7 10.0 42 76-122 6-47 (272)
114 PRK06181 short chain dehydroge 92.5 1.2 2.6E-05 42.4 10.3 39 77-119 2-40 (263)
115 PRK06200 2,3-dihydroxy-2,3-dih 92.5 1.2 2.7E-05 42.5 10.4 63 76-142 6-69 (263)
116 PRK08278 short chain dehydroge 92.5 1.4 2.9E-05 43.0 10.8 65 77-143 7-80 (273)
117 PRK07326 short chain dehydroge 92.4 0.72 1.6E-05 43.0 8.6 81 77-176 7-90 (237)
118 PRK06194 hypothetical protein; 92.4 1.3 2.9E-05 42.8 10.7 64 76-143 6-73 (287)
119 PRK07814 short chain dehydroge 92.3 1.3 2.7E-05 42.7 10.3 84 76-176 10-95 (263)
120 PRK14874 aspartate-semialdehyd 92.3 0.2 4.3E-06 51.6 5.0 38 76-114 1-40 (334)
121 PRK06138 short chain dehydroge 92.3 1.5 3.3E-05 41.1 10.6 82 76-176 5-89 (252)
122 COG0300 DltE Short-chain dehyd 92.3 0.67 1.5E-05 47.0 8.7 50 75-128 5-54 (265)
123 PRK12826 3-ketoacyl-(acyl-carr 92.2 1.3 2.8E-05 41.3 10.1 82 76-176 6-91 (251)
124 TIGR03325 BphB_TodD cis-2,3-di 92.2 1.3 2.8E-05 42.4 10.3 45 76-124 5-49 (262)
125 PLN02240 UDP-glucose 4-epimera 92.2 0.64 1.4E-05 46.3 8.5 32 76-109 5-36 (352)
126 COG1091 RfbD dTDP-4-dehydrorha 92.2 0.32 6.9E-06 49.8 6.3 50 79-131 3-56 (281)
127 PRK06949 short chain dehydroge 92.1 2.1 4.6E-05 40.4 11.4 64 76-143 9-76 (258)
128 PRK05565 fabG 3-ketoacyl-(acyl 92.1 1.4 2.9E-05 41.1 10.0 65 75-142 4-72 (247)
129 PRK06598 aspartate-semialdehyd 92.1 0.28 6.1E-06 51.8 6.0 33 76-109 1-36 (369)
130 COG1712 Predicted dinucleotide 92.0 1.1 2.4E-05 45.2 9.6 135 78-251 2-144 (255)
131 PLN02383 aspartate semialdehyd 92.0 0.23 5.1E-06 51.7 5.2 41 75-116 6-48 (344)
132 PRK12936 3-ketoacyl-(acyl-carr 92.0 1.8 4E-05 40.3 10.8 64 76-143 6-70 (245)
133 PRK09291 short chain dehydroge 92.0 0.62 1.4E-05 44.0 7.7 50 76-127 2-52 (257)
134 TIGR01532 E4PD_g-proteo D-eryt 92.0 1.4 3E-05 45.8 10.8 109 78-197 1-119 (325)
135 PRK11908 NAD-dependent epimera 91.9 0.21 4.6E-06 50.1 4.7 33 76-109 1-33 (347)
136 PRK12935 acetoacetyl-CoA reduc 91.9 1.6 3.4E-05 41.1 10.2 85 76-179 6-94 (247)
137 PRK13301 putative L-aspartate 91.8 1.2 2.5E-05 45.5 9.8 139 76-254 2-149 (267)
138 COG2910 Putative NADH-flavin r 91.8 1.2 2.6E-05 43.8 9.5 39 77-119 1-39 (211)
139 PRK09135 pteridine reductase; 91.8 1.6 3.4E-05 40.7 10.1 41 77-120 7-47 (249)
140 PRK09134 short chain dehydroge 91.8 1.4 3E-05 42.0 9.9 83 76-176 9-95 (258)
141 PRK07102 short chain dehydroge 91.7 0.97 2.1E-05 42.6 8.7 42 76-121 1-42 (243)
142 PRK06924 short chain dehydroge 91.7 0.88 1.9E-05 42.9 8.4 65 76-143 1-66 (251)
143 PLN02260 probable rhamnose bio 91.7 0.47 1E-05 52.6 7.5 52 77-130 381-433 (668)
144 PLN02427 UDP-apiose/xylose syn 91.7 0.27 5.9E-06 50.3 5.3 38 71-109 9-46 (386)
145 PRK05671 aspartate-semialdehyd 91.7 0.27 5.8E-06 51.1 5.3 38 76-114 4-43 (336)
146 PRK12744 short chain dehydroge 91.7 1.9 4.2E-05 41.0 10.7 83 77-176 9-97 (257)
147 PRK09072 short chain dehydroge 91.7 2 4.4E-05 41.1 10.9 84 76-180 5-91 (263)
148 PRK09880 L-idonate 5-dehydroge 91.7 1.3 2.8E-05 44.5 10.0 95 76-198 170-265 (343)
149 TIGR01472 gmd GDP-mannose 4,6- 91.6 0.55 1.2E-05 47.1 7.3 68 77-146 1-76 (343)
150 PRK07890 short chain dehydroge 91.6 1.4 3E-05 41.6 9.6 44 76-123 5-48 (258)
151 PRK06128 oxidoreductase; Provi 91.6 1.7 3.6E-05 43.0 10.5 65 77-143 56-124 (300)
152 PRK06483 dihydromonapterin red 91.6 1.8 3.8E-05 40.7 10.2 63 75-142 1-63 (236)
153 PRK05867 short chain dehydroge 91.5 1.5 3.2E-05 41.7 9.6 62 77-142 10-75 (253)
154 KOG1502 Flavonol reductase/cin 91.5 0.48 1E-05 49.5 6.8 68 75-144 5-76 (327)
155 COG0702 Predicted nucleoside-d 91.4 0.75 1.6E-05 43.5 7.5 41 77-121 1-41 (275)
156 PRK10217 dTDP-glucose 4,6-dehy 91.3 0.55 1.2E-05 47.0 6.9 33 76-110 1-33 (355)
157 PRK07453 protochlorophyllide o 91.2 2.4 5.3E-05 42.2 11.3 46 75-124 5-50 (322)
158 PRK06172 short chain dehydroge 91.2 1.8 3.9E-05 41.0 9.9 63 76-142 7-73 (253)
159 PRK08642 fabG 3-ketoacyl-(acyl 91.1 1.4 3E-05 41.4 9.0 65 77-144 6-71 (253)
160 PLN03209 translocon at the inn 91.1 1.6 3.4E-05 48.9 10.7 45 74-122 78-122 (576)
161 PRK08017 oxidoreductase; Provi 91.1 1.2 2.6E-05 42.0 8.6 61 76-142 2-62 (256)
162 PRK06914 short chain dehydroge 91.0 2.1 4.4E-05 41.3 10.2 40 76-119 3-42 (280)
163 TIGR01921 DAP-DH diaminopimela 90.9 1.2 2.6E-05 46.5 9.0 39 76-116 3-41 (324)
164 PRK06841 short chain dehydroge 90.8 1.8 3.9E-05 40.9 9.5 33 76-110 15-47 (255)
165 PLN02572 UDP-sulfoquinovose sy 90.8 1 2.2E-05 48.0 8.7 33 75-109 46-78 (442)
166 PF01113 DapB_N: Dihydrodipico 90.8 0.75 1.6E-05 40.7 6.5 35 78-113 2-36 (124)
167 PRK07074 short chain dehydroge 90.7 2.7 5.9E-05 39.8 10.7 82 76-176 2-85 (257)
168 PRK07478 short chain dehydroge 90.7 2 4.3E-05 40.8 9.8 63 77-143 7-73 (254)
169 PRK07904 short chain dehydroge 90.7 3.2 7E-05 40.0 11.3 35 74-109 6-40 (253)
170 PRK07109 short chain dehydroge 90.6 2.1 4.6E-05 43.5 10.4 82 76-176 8-93 (334)
171 PRK06701 short chain dehydroge 90.6 3.2 6.9E-05 41.1 11.4 65 77-143 47-114 (290)
172 PRK05993 short chain dehydroge 90.6 2.8 6E-05 40.8 10.8 42 75-120 3-44 (277)
173 PRK07063 short chain dehydroge 90.6 2.2 4.7E-05 40.7 9.9 45 76-124 7-51 (260)
174 PRK08416 7-alpha-hydroxysteroi 90.5 2.2 4.7E-05 40.9 9.9 65 76-143 8-77 (260)
175 PRK05872 short chain dehydroge 90.5 2.5 5.5E-05 41.7 10.6 82 76-176 9-93 (296)
176 PRK12938 acetyacetyl-CoA reduc 90.5 3.1 6.8E-05 39.1 10.7 83 76-176 3-89 (246)
177 PRK09242 tropinone reductase; 90.4 2.5 5.4E-05 40.2 10.1 45 76-124 9-53 (257)
178 PRK12937 short chain dehydroge 90.3 3.4 7.3E-05 38.6 10.8 83 76-176 5-91 (245)
179 cd05286 QOR2 Quinone oxidoredu 90.3 2.4 5.3E-05 40.1 9.9 93 77-194 138-230 (320)
180 TIGR02415 23BDH acetoin reduct 90.3 2.5 5.5E-05 39.8 10.0 83 77-176 1-85 (254)
181 TIGR01963 PHB_DH 3-hydroxybuty 90.2 1.2 2.6E-05 41.8 7.7 63 77-143 2-68 (255)
182 TIGR03206 benzo_BadH 2-hydroxy 90.2 2.3 5E-05 39.8 9.6 41 76-120 3-43 (250)
183 PRK06197 short chain dehydroge 90.2 2.7 5.8E-05 41.5 10.5 40 76-119 16-55 (306)
184 PRK05875 short chain dehydroge 90.2 3 6.4E-05 40.1 10.5 39 77-119 8-46 (276)
185 PRK07832 short chain dehydroge 90.1 2.7 5.8E-05 40.6 10.2 43 77-123 1-43 (272)
186 PRK07097 gluconate 5-dehydroge 90.1 3.2 7E-05 39.8 10.7 64 76-143 10-77 (265)
187 PRK12384 sorbitol-6-phosphate 90.1 3.2 6.9E-05 39.4 10.5 32 76-109 2-33 (259)
188 PRK10675 UDP-galactose-4-epime 90.1 2.4 5.3E-05 41.9 10.1 30 78-109 2-31 (338)
189 smart00846 Gp_dh_N Glyceraldeh 89.9 3.3 7.2E-05 38.3 10.2 107 78-197 2-117 (149)
190 PLN00112 malate dehydrogenase 89.9 1.8 3.9E-05 47.0 9.6 55 68-124 92-153 (444)
191 cd01065 NAD_bind_Shikimate_DH 89.9 2 4.4E-05 37.9 8.5 47 76-126 19-65 (155)
192 TIGR03589 PseB UDP-N-acetylglu 89.8 1.5 3.3E-05 44.1 8.6 34 76-109 4-37 (324)
193 PRK08085 gluconate 5-dehydroge 89.8 2.8 6.2E-05 39.7 9.9 45 76-124 9-53 (254)
194 PF00106 adh_short: short chai 89.8 3.2 6.9E-05 36.5 9.6 84 77-176 1-88 (167)
195 PRK05854 short chain dehydroge 89.8 4.4 9.5E-05 40.6 11.7 81 76-175 14-100 (313)
196 PLN02725 GDP-4-keto-6-deoxyman 89.8 0.56 1.2E-05 45.5 5.2 49 80-130 1-54 (306)
197 cd08294 leukotriene_B4_DH_like 89.7 2 4.3E-05 42.0 9.0 92 77-195 145-237 (329)
198 PRK05866 short chain dehydroge 89.6 4.1 8.9E-05 40.4 11.3 43 77-123 41-83 (293)
199 PRK05650 short chain dehydroge 89.6 3.2 6.9E-05 40.0 10.2 43 77-123 1-43 (270)
200 PRK06139 short chain dehydroge 89.5 2 4.3E-05 43.9 9.2 84 76-179 7-94 (330)
201 PLN02214 cinnamoyl-CoA reducta 89.5 1.8 4E-05 43.9 8.9 33 76-110 10-42 (342)
202 PRK12824 acetoacetyl-CoA reduc 89.5 3.8 8.3E-05 38.1 10.4 34 76-111 2-35 (245)
203 PRK08339 short chain dehydroge 89.5 3.6 7.8E-05 39.9 10.6 64 76-143 8-76 (263)
204 PRK06077 fabG 3-ketoacyl-(acyl 89.5 3.2 7E-05 38.9 10.0 63 76-141 6-72 (252)
205 cd08250 Mgc45594_like Mgc45594 89.5 2.6 5.6E-05 41.3 9.7 93 77-195 141-233 (329)
206 PLN02253 xanthoxin dehydrogena 89.4 3.5 7.6E-05 39.8 10.4 82 76-176 18-102 (280)
207 PRK12827 short chain dehydroge 89.3 1.9 4.2E-05 40.1 8.3 66 76-143 6-77 (249)
208 PF02719 Polysacc_synt_2: Poly 89.3 1.5 3.2E-05 45.3 8.1 42 79-124 1-43 (293)
209 PLN02653 GDP-mannose 4,6-dehyd 89.3 1.2 2.6E-05 44.5 7.3 67 77-145 7-80 (340)
210 cd08293 PTGR2 Prostaglandin re 89.2 3.2 6.9E-05 41.2 10.2 94 77-195 156-250 (345)
211 TIGR01829 AcAcCoA_reduct aceto 89.2 4.1 8.9E-05 37.9 10.4 40 77-119 1-40 (242)
212 cd08239 THR_DH_like L-threonin 89.2 2.2 4.9E-05 42.3 9.1 94 76-195 164-258 (339)
213 PF00551 Formyl_trans_N: Formy 89.1 1.4 3E-05 41.4 7.1 55 77-131 1-56 (181)
214 TIGR00978 asd_EA aspartate-sem 89.1 0.49 1.1E-05 48.8 4.5 33 78-111 2-34 (341)
215 COG0136 Asd Aspartate-semialde 89.0 0.55 1.2E-05 49.2 4.8 38 76-113 1-39 (334)
216 COG4221 Short-chain alcohol de 88.9 1.1 2.3E-05 45.3 6.6 61 77-141 7-69 (246)
217 TIGR01746 Thioester-redct thio 88.9 1.1 2.3E-05 44.1 6.5 36 78-113 1-36 (367)
218 PRK01438 murD UDP-N-acetylmura 88.8 3.1 6.7E-05 44.3 10.4 117 76-253 16-132 (480)
219 PRK12746 short chain dehydroge 88.8 2.8 6.1E-05 39.5 9.1 46 76-124 6-51 (254)
220 PRK06463 fabG 3-ketoacyl-(acyl 88.7 4.3 9.3E-05 38.6 10.3 62 77-143 8-69 (255)
221 KOG1198 Zinc-binding oxidoredu 88.6 2.8 6E-05 43.9 9.7 140 72-260 154-293 (347)
222 TIGR03201 dearomat_had 6-hydro 88.6 4.6 0.0001 40.7 11.0 104 76-197 167-270 (349)
223 PRK08340 glucose-1-dehydrogena 88.6 4.3 9.3E-05 38.8 10.3 80 78-176 2-84 (259)
224 PRK06113 7-alpha-hydroxysteroi 88.6 4.4 9.6E-05 38.5 10.4 64 76-143 11-78 (255)
225 TIGR03649 ergot_EASG ergot alk 88.6 0.49 1.1E-05 46.0 3.9 32 78-111 1-32 (285)
226 PLN02986 cinnamyl-alcohol dehy 88.5 2.3 5.1E-05 42.1 8.7 33 76-110 5-37 (322)
227 PRK07023 short chain dehydroge 88.5 2 4.3E-05 40.5 7.8 34 76-111 1-34 (243)
228 PLN02896 cinnamyl-alcohol dehy 88.4 2.1 4.6E-05 43.2 8.5 31 77-109 11-41 (353)
229 TIGR01777 yfcH conserved hypot 88.4 0.46 9.9E-06 45.5 3.5 30 79-110 1-30 (292)
230 PLN02662 cinnamyl-alcohol dehy 88.4 0.53 1.1E-05 46.2 4.1 32 77-110 5-36 (322)
231 PRK06179 short chain dehydroge 88.4 3.1 6.8E-05 39.8 9.3 78 76-176 4-81 (270)
232 cd08274 MDR9 Medium chain dehy 88.4 3.5 7.6E-05 40.8 9.8 91 77-195 179-269 (350)
233 TIGR01546 GAPDH-II_archae glyc 88.2 2.9 6.3E-05 43.8 9.4 99 79-192 1-99 (333)
234 PRK07576 short chain dehydroge 88.1 4.9 0.00011 38.8 10.5 81 77-176 10-94 (264)
235 smart00859 Semialdhyde_dh Semi 88.1 0.78 1.7E-05 39.7 4.5 33 78-111 1-33 (122)
236 PRK08862 short chain dehydroge 88.1 4.2 9.1E-05 38.9 9.9 64 76-143 5-72 (227)
237 PRK06114 short chain dehydroge 88.1 6 0.00013 37.7 10.9 65 76-142 8-75 (254)
238 PLN03154 putative allyl alcoho 88.1 4.1 8.8E-05 41.5 10.3 96 77-196 160-255 (348)
239 PRK06125 short chain dehydroge 88.1 3.9 8.4E-05 39.0 9.6 44 77-124 8-51 (259)
240 TIGR01179 galE UDP-glucose-4-e 88.0 2.9 6.4E-05 40.4 8.9 30 78-109 1-30 (328)
241 cd08289 MDR_yhfp_like Yhfp put 87.9 3.2 7E-05 40.5 9.1 93 76-195 147-239 (326)
242 COG1088 RfbB dTDP-D-glucose 4, 87.9 1.7 3.6E-05 45.5 7.3 53 77-131 1-56 (340)
243 PRK08177 short chain dehydroge 87.9 1.1 2.4E-05 41.9 5.7 33 76-110 1-33 (225)
244 PLN02503 fatty acyl-CoA reduct 87.8 2.8 6.1E-05 47.1 9.7 39 75-113 118-157 (605)
245 PRK07417 arogenate dehydrogena 87.8 4.5 9.7E-05 40.2 10.2 29 78-109 2-30 (279)
246 PRK07985 oxidoreductase; Provi 87.7 5.2 0.00011 39.7 10.6 66 76-143 49-118 (294)
247 PRK13535 erythrose 4-phosphate 87.6 4.4 9.5E-05 42.5 10.4 110 77-197 2-121 (336)
248 PRK06123 short chain dehydroge 87.6 3.9 8.4E-05 38.4 9.2 82 77-176 3-88 (248)
249 PRK12429 3-hydroxybutyrate deh 87.6 3.5 7.5E-05 38.8 8.8 64 77-144 5-72 (258)
250 cd08243 quinone_oxidoreductase 87.6 3.8 8.2E-05 39.4 9.3 92 76-195 143-234 (320)
251 PRK08217 fabG 3-ketoacyl-(acyl 87.5 5.4 0.00012 37.2 10.1 42 77-122 6-47 (253)
252 PRK06124 gluconate 5-dehydroge 87.3 3.4 7.4E-05 39.2 8.7 65 75-143 10-78 (256)
253 PLN00016 RNA-binding protein; 87.3 0.66 1.4E-05 47.6 4.1 36 74-111 50-89 (378)
254 PRK14982 acyl-ACP reductase; P 87.2 1.3 2.7E-05 46.5 6.1 47 76-124 155-201 (340)
255 PRK06484 short chain dehydroge 87.1 4.9 0.00011 42.7 10.6 64 76-143 5-69 (520)
256 PRK08251 short chain dehydroge 87.1 6.6 0.00014 36.9 10.4 41 76-120 2-42 (248)
257 cd08295 double_bond_reductase_ 87.1 4.7 0.0001 40.2 9.9 93 77-195 153-247 (338)
258 PRK05876 short chain dehydroge 87.0 6.3 0.00014 38.6 10.6 64 76-143 6-73 (275)
259 PRK07831 short chain dehydroge 87.0 7 0.00015 37.4 10.7 41 76-120 17-58 (262)
260 PLN02206 UDP-glucuronate decar 86.9 0.74 1.6E-05 49.2 4.3 31 77-109 120-150 (442)
261 TIGR01289 LPOR light-dependent 86.9 7.7 0.00017 38.9 11.4 65 76-143 3-71 (314)
262 PRK07062 short chain dehydroge 86.8 5.2 0.00011 38.2 9.7 42 76-121 8-49 (265)
263 TIGR03366 HpnZ_proposed putati 86.7 3.9 8.5E-05 40.0 9.0 92 77-195 122-214 (280)
264 PRK06484 short chain dehydroge 86.6 8.4 0.00018 40.9 12.1 65 75-143 268-333 (520)
265 cd08238 sorbose_phosphate_red 86.6 13 0.00028 38.8 13.1 195 77-296 177-404 (410)
266 PRK07677 short chain dehydroge 86.5 6.7 0.00014 37.3 10.2 41 77-121 2-42 (252)
267 PRK08125 bifunctional UDP-gluc 86.5 0.83 1.8E-05 50.9 4.7 33 77-110 316-348 (660)
268 COG3320 Putative dehydrogenase 86.5 2.7 5.8E-05 45.0 8.1 83 77-175 1-94 (382)
269 PLN02166 dTDP-glucose 4,6-dehy 86.5 0.82 1.8E-05 48.8 4.4 31 77-109 121-151 (436)
270 PRK08264 short chain dehydroge 86.4 5.2 0.00011 37.4 9.3 39 76-118 6-45 (238)
271 TIGR02825 B4_12hDH leukotriene 86.4 5.6 0.00012 39.3 10.0 93 77-195 140-233 (325)
272 PLN02650 dihydroflavonol-4-red 86.4 0.84 1.8E-05 46.0 4.2 33 76-110 5-37 (351)
273 COG2201 CheB Chemotaxis respon 86.3 7.5 0.00016 41.2 11.2 106 77-202 2-107 (350)
274 PRK08277 D-mannonate oxidoredu 86.3 6 0.00013 38.2 9.9 44 76-123 10-53 (278)
275 PRK06198 short chain dehydroge 86.2 2.9 6.3E-05 39.6 7.6 63 76-142 6-73 (260)
276 KOG4777 Aspartate-semialdehyde 86.1 0.53 1.1E-05 48.3 2.6 31 77-108 4-35 (361)
277 PRK07792 fabG 3-ketoacyl-(acyl 86.0 4.9 0.00011 40.1 9.4 65 76-142 12-79 (306)
278 PLN02686 cinnamoyl-CoA reducta 85.9 4.7 0.0001 41.6 9.4 34 74-109 51-84 (367)
279 PRK05884 short chain dehydroge 85.7 5 0.00011 38.0 8.8 60 78-142 2-61 (223)
280 PRK08703 short chain dehydroge 85.6 1.9 4.1E-05 40.5 5.9 43 77-123 7-49 (239)
281 PRK07889 enoyl-(acyl carrier p 85.5 6.5 0.00014 38.0 9.7 65 76-142 7-74 (256)
282 PRK08945 putative oxoacyl-(acy 85.5 2.8 6.1E-05 39.6 7.1 32 76-109 12-43 (247)
283 cd08259 Zn_ADH5 Alcohol dehydr 85.4 7.3 0.00016 37.8 10.1 89 76-194 163-251 (332)
284 PRK07775 short chain dehydroge 85.3 5 0.00011 39.0 8.8 64 76-143 10-77 (274)
285 PRK10309 galactitol-1-phosphat 85.2 6.5 0.00014 39.4 9.9 95 76-196 161-257 (347)
286 PRK08936 glucose-1-dehydrogena 85.2 6.5 0.00014 37.5 9.5 65 76-143 7-75 (261)
287 cd08231 MDR_TM0436_like Hypoth 85.2 6.9 0.00015 39.3 10.1 95 76-192 178-273 (361)
288 TIGR02685 pter_reduc_Leis pter 85.1 6.8 0.00015 37.7 9.7 45 77-124 2-46 (267)
289 PLN00198 anthocyanidin reducta 85.1 1.4 2.9E-05 44.1 4.9 34 75-110 8-41 (338)
290 PRK05786 fabG 3-ketoacyl-(acyl 85.0 3.9 8.4E-05 38.1 7.7 43 76-122 5-47 (238)
291 PRK05855 short chain dehydroge 85.0 7.7 0.00017 41.0 10.7 85 76-180 315-403 (582)
292 PRK12747 short chain dehydroge 84.9 6 0.00013 37.5 9.0 43 76-121 4-46 (252)
293 TIGR03451 mycoS_dep_FDH mycoth 84.8 4.8 0.0001 40.8 8.8 93 76-194 177-271 (358)
294 PRK07666 fabG 3-ketoacyl-(acyl 84.7 5.7 0.00012 37.2 8.7 44 76-123 7-50 (239)
295 PLN02989 cinnamyl-alcohol dehy 84.7 1.4 2.9E-05 43.7 4.7 33 75-109 4-36 (325)
296 PRK08213 gluconate 5-dehydroge 84.5 4.8 0.0001 38.3 8.2 42 76-121 12-53 (259)
297 PRK08261 fabG 3-ketoacyl-(acyl 84.5 4.9 0.00011 42.2 9.0 62 77-141 211-272 (450)
298 cd05284 arabinose_DH_like D-ar 84.5 11 0.00025 37.1 11.1 95 76-195 168-262 (340)
299 cd08292 ETR_like_2 2-enoyl thi 84.3 6.7 0.00014 38.2 9.2 94 77-195 141-234 (324)
300 TIGR01296 asd_B aspartate-semi 84.2 1.2 2.5E-05 46.3 4.2 36 78-114 1-38 (339)
301 cd08230 glucose_DH Glucose deh 84.2 4.6 0.0001 40.7 8.4 89 77-193 174-263 (355)
302 PF07993 NAD_binding_4: Male s 84.1 1.9 4.2E-05 41.7 5.4 39 81-119 1-39 (249)
303 PRK07069 short chain dehydroge 84.0 8.9 0.00019 35.9 9.6 43 78-123 1-43 (251)
304 TIGR00639 PurN phosphoribosylg 83.9 18 0.00039 34.8 11.8 117 77-194 1-130 (190)
305 TIGR01745 asd_gamma aspartate- 83.8 0.94 2E-05 48.0 3.3 25 77-101 1-25 (366)
306 PRK07577 short chain dehydroge 83.8 6.7 0.00015 36.4 8.7 31 77-109 4-34 (234)
307 cd08290 ETR 2-enoyl thioester 83.8 8.1 0.00018 38.1 9.7 98 76-193 147-245 (341)
308 PRK07791 short chain dehydroge 83.8 9.9 0.00021 37.5 10.3 32 76-109 6-37 (286)
309 COG0451 WcaG Nucleoside-diphos 83.7 1.5 3.3E-05 42.3 4.5 34 78-113 2-35 (314)
310 cd08244 MDR_enoyl_red Possible 83.7 9.8 0.00021 36.9 10.1 93 76-194 143-236 (324)
311 COG1086 Predicted nucleoside-d 83.5 10 0.00022 42.7 11.1 157 72-236 112-293 (588)
312 smart00822 PKS_KR This enzymat 83.4 7.4 0.00016 33.4 8.2 23 77-99 1-23 (180)
313 PRK08220 2,3-dihydroxybenzoate 83.3 8.9 0.00019 36.1 9.4 32 77-110 9-40 (252)
314 TIGR03466 HpnA hopanoid-associ 83.2 1.4 3.1E-05 42.9 4.1 32 77-110 1-32 (328)
315 cd08268 MDR2 Medium chain dehy 83.2 8.9 0.00019 36.7 9.5 93 77-194 146-238 (328)
316 cd05282 ETR_like 2-enoyl thioe 83.1 15 0.00031 35.7 11.0 94 76-195 139-233 (323)
317 PRK07201 short chain dehydroge 82.7 9.9 0.00021 41.6 10.7 82 76-176 371-456 (657)
318 PRK08303 short chain dehydroge 82.6 12 0.00027 37.6 10.6 32 76-109 8-39 (305)
319 PRK06079 enoyl-(acyl carrier p 82.5 12 0.00025 36.1 10.0 46 76-126 7-54 (252)
320 PRK08324 short chain dehydroge 82.5 9.9 0.00021 42.8 10.8 45 77-125 423-467 (681)
321 PRK12859 3-ketoacyl-(acyl-carr 82.2 9.6 0.00021 36.5 9.3 31 76-108 6-38 (256)
322 PLN02780 ketoreductase/ oxidor 82.1 4.8 0.0001 40.8 7.6 44 77-124 54-97 (320)
323 PLN03096 glyceraldehyde-3-phos 82.0 12 0.00025 40.4 10.6 114 75-198 59-181 (395)
324 cd08264 Zn_ADH_like2 Alcohol d 82.0 8.3 0.00018 37.8 9.0 88 77-197 164-251 (325)
325 PRK11150 rfaD ADP-L-glycero-D- 81.8 1.8 3.9E-05 42.5 4.2 31 79-111 2-32 (308)
326 cd08249 enoyl_reductase_like e 81.7 13 0.00028 37.2 10.4 90 76-191 155-244 (339)
327 PRK07856 short chain dehydroge 81.3 11 0.00024 35.8 9.3 32 76-109 6-37 (252)
328 cd08301 alcohol_DH_plants Plan 81.3 12 0.00025 38.0 10.0 92 77-192 189-281 (369)
329 PRK06953 short chain dehydroge 81.1 8.5 0.00018 35.9 8.3 39 76-118 1-39 (222)
330 cd08233 butanediol_DH_like (2R 81.1 7.2 0.00016 39.0 8.3 93 77-194 174-267 (351)
331 TIGR01830 3oxo_ACP_reduc 3-oxo 81.0 8.3 0.00018 35.7 8.1 81 79-176 1-84 (239)
332 TIGR03025 EPS_sugtrans exopoly 80.8 12 0.00025 39.7 10.2 61 75-136 124-199 (445)
333 KOG2741 Dimeric dihydrodiol de 80.8 11 0.00025 39.9 9.9 154 75-257 5-166 (351)
334 PRK08306 dipicolinate synthase 80.7 12 0.00025 38.2 9.7 44 76-125 152-195 (296)
335 PRK12748 3-ketoacyl-(acyl-carr 80.6 16 0.00036 34.7 10.2 32 76-109 5-38 (256)
336 PF01073 3Beta_HSD: 3-beta hyd 80.5 4 8.8E-05 40.8 6.3 62 80-142 1-62 (280)
337 cd08261 Zn_ADH7 Alcohol dehydr 80.5 14 0.0003 36.6 10.0 92 77-193 161-252 (337)
338 PLN02514 cinnamyl-alcohol dehy 80.2 13 0.00029 37.8 10.0 90 77-195 182-271 (357)
339 cd05276 p53_inducible_oxidored 80.1 15 0.00033 34.8 9.8 48 77-129 141-188 (323)
340 PRK05396 tdh L-threonine 3-deh 80.0 15 0.00032 36.6 10.1 96 76-196 164-260 (341)
341 PRK06720 hypothetical protein; 80.0 19 0.0004 33.6 10.1 65 76-143 16-83 (169)
342 cd08269 Zn_ADH9 Alcohol dehydr 80.0 9.5 0.00021 36.8 8.5 93 76-194 130-224 (312)
343 TIGR02782 TrbB_P P-type conjug 80.0 7.1 0.00015 39.9 7.9 56 76-132 132-211 (299)
344 KOG2733 Uncharacterized membra 79.9 3.6 7.7E-05 44.1 5.8 105 78-212 7-123 (423)
345 PRK10754 quinone oxidoreductas 79.9 13 0.00029 36.4 9.6 91 77-192 142-232 (327)
346 PRK07424 bifunctional sterol d 79.8 9.8 0.00021 40.7 9.2 41 76-120 178-218 (406)
347 cd08281 liver_ADH_like1 Zinc-d 79.7 9 0.00019 39.1 8.6 93 77-195 193-286 (371)
348 PF01488 Shikimate_DH: Shikima 79.5 11 0.00025 33.6 8.3 46 76-125 12-57 (135)
349 PRK10124 putative UDP-glucose 79.3 11 0.00023 40.8 9.4 61 75-136 142-214 (463)
350 PLN02586 probable cinnamyl alc 79.0 10 0.00022 38.8 8.8 89 77-194 185-273 (360)
351 cd08246 crotonyl_coA_red croto 78.7 17 0.00038 37.2 10.3 110 77-194 195-310 (393)
352 cd05278 FDH_like Formaldehyde 78.7 14 0.00031 36.4 9.4 96 77-196 169-264 (347)
353 cd08297 CAD3 Cinnamyl alcohol 78.6 20 0.00044 35.4 10.5 95 77-196 167-262 (341)
354 PRK06940 short chain dehydroge 78.4 17 0.00037 35.5 9.8 61 77-143 3-67 (275)
355 KOG1203 Predicted dehydrogenas 78.4 13 0.00028 40.3 9.5 45 70-118 73-117 (411)
356 cd05288 PGDH Prostaglandin deh 78.3 14 0.00031 36.0 9.2 93 77-195 147-240 (329)
357 PLN02996 fatty acyl-CoA reduct 78.2 2.8 6.1E-05 45.4 4.6 36 75-110 10-46 (491)
358 cd01075 NAD_bind_Leu_Phe_Val_D 78.2 12 0.00026 35.9 8.4 43 77-124 29-71 (200)
359 COG0002 ArgC Acetylglutamate s 77.8 2.8 6.1E-05 44.3 4.4 34 75-109 1-34 (349)
360 PLN02775 Probable dihydrodipic 77.7 9.7 0.00021 39.3 8.1 32 77-110 12-43 (286)
361 cd06578 HemD Uroporphyrinogen- 77.7 16 0.00034 34.0 8.9 141 87-233 83-237 (239)
362 cd08235 iditol_2_DH_like L-idi 77.7 12 0.00027 36.9 8.7 95 76-195 166-261 (343)
363 PRK06997 enoyl-(acyl carrier p 77.7 17 0.00037 35.2 9.5 67 76-144 6-75 (260)
364 cd08300 alcohol_DH_class_III c 77.6 19 0.00041 36.7 10.1 92 76-191 187-279 (368)
365 cd08256 Zn_ADH2 Alcohol dehydr 77.4 16 0.00034 36.6 9.4 93 77-195 176-270 (350)
366 cd08284 FDH_like_2 Glutathione 77.4 17 0.00037 35.9 9.6 91 77-193 169-260 (344)
367 TIGR01751 crot-CoA-red crotony 77.2 21 0.00045 36.9 10.4 113 77-195 191-306 (398)
368 PRK07370 enoyl-(acyl carrier p 77.2 19 0.00042 34.7 9.7 66 76-143 6-77 (258)
369 PRK13656 trans-2-enoyl-CoA red 77.0 22 0.00048 38.4 10.8 104 74-196 39-170 (398)
370 TIGR03443 alpha_am_amid L-amin 76.9 6.1 0.00013 47.2 7.3 40 74-113 969-1010(1389)
371 cd05285 sorbitol_DH Sorbitol d 76.8 22 0.00048 35.4 10.3 96 77-194 164-260 (343)
372 PRK11199 tyrA bifunctional cho 76.7 30 0.00064 36.4 11.5 56 75-135 97-152 (374)
373 TIGR01831 fabG_rel 3-oxoacyl-( 76.7 8.9 0.00019 35.8 7.0 40 79-121 1-40 (239)
374 cd08241 QOR1 Quinone oxidoredu 76.6 15 0.00033 34.9 8.7 91 77-192 141-231 (323)
375 PRK10084 dTDP-glucose 4,6 dehy 76.6 15 0.00032 36.8 9.0 31 78-109 2-32 (352)
376 cd08258 Zn_ADH4 Alcohol dehydr 76.5 18 0.00039 35.8 9.4 96 77-196 166-261 (306)
377 TIGR02632 RhaD_aldol-ADH rhamn 76.4 15 0.00034 41.4 10.0 45 76-124 414-458 (676)
378 PRK08118 topology modulation p 76.4 1.6 3.5E-05 40.4 2.0 19 76-95 1-19 (167)
379 PRK07041 short chain dehydroge 76.4 18 0.0004 33.5 9.0 60 80-143 1-63 (230)
380 PRK08159 enoyl-(acyl carrier p 76.3 24 0.00051 34.6 10.1 64 77-143 11-78 (272)
381 PRK06217 hypothetical protein; 76.2 1.7 3.7E-05 40.3 2.0 19 76-95 1-19 (183)
382 PLN02358 glyceraldehyde-3-phos 75.9 14 0.00031 38.7 8.9 113 76-198 5-126 (338)
383 cd08252 AL_MDR Arginate lyase 75.7 22 0.00048 34.8 9.8 96 76-196 150-245 (336)
384 TIGR00715 precor6x_red precorr 75.7 6.4 0.00014 39.6 6.0 78 77-181 1-78 (256)
385 PRK05472 redox-sensing transcr 75.6 17 0.00036 34.9 8.7 73 71-144 79-166 (213)
386 cd05188 MDR Medium chain reduc 75.4 20 0.00043 33.3 8.9 93 76-194 135-227 (271)
387 COG0057 GapA Glyceraldehyde-3- 75.4 30 0.00066 36.6 11.0 113 77-197 2-120 (335)
388 PLN02178 cinnamyl-alcohol dehy 75.2 19 0.0004 37.4 9.5 90 77-195 180-269 (375)
389 PRK07533 enoyl-(acyl carrier p 75.2 30 0.00064 33.4 10.3 65 76-143 10-78 (258)
390 TIGR02823 oxido_YhdH putative 75.0 18 0.00038 35.4 8.8 90 78-195 148-237 (323)
391 TIGR03022 WbaP_sugtrans Undeca 74.9 16 0.00035 38.8 9.1 58 75-134 124-197 (456)
392 COG3268 Uncharacterized conser 74.9 16 0.00036 38.9 8.9 157 75-259 5-177 (382)
393 PF07287 DUF1446: Protein of u 74.5 13 0.00027 39.6 8.1 99 91-198 62-166 (362)
394 PLN02740 Alcohol dehydrogenase 74.5 21 0.00045 36.7 9.6 91 77-191 200-291 (381)
395 TIGR02818 adh_III_F_hyde S-(hy 74.3 28 0.0006 35.6 10.4 91 77-191 187-278 (368)
396 cd05280 MDR_yhdh_yhfp Yhdh and 74.3 28 0.00062 33.7 10.0 90 77-193 148-237 (325)
397 PLN02256 arogenate dehydrogena 74.2 14 0.00029 38.0 8.1 35 74-111 34-68 (304)
398 PRK13894 conjugal transfer ATP 74.1 19 0.00041 37.3 9.2 57 76-133 148-227 (319)
399 PF01935 DUF87: Domain of unkn 74.0 1.9 4.1E-05 41.0 1.8 17 76-93 23-39 (229)
400 PRK13011 formyltetrahydrofolat 73.8 28 0.0006 35.7 10.1 130 75-212 88-237 (286)
401 PRK08309 short chain dehydroge 73.5 66 0.0014 30.4 12.0 62 78-144 2-66 (177)
402 cd08296 CAD_like Cinnamyl alco 73.3 25 0.00053 35.1 9.5 89 77-193 165-253 (333)
403 PRK08690 enoyl-(acyl carrier p 73.1 23 0.00051 34.2 9.1 84 76-176 6-92 (261)
404 cd01336 MDH_cytoplasmic_cytoso 73.1 3.1 6.8E-05 42.9 3.2 42 76-117 2-48 (325)
405 cd08253 zeta_crystallin Zeta-c 73.0 25 0.00054 33.5 9.2 49 76-129 145-193 (325)
406 PRK06849 hypothetical protein; 72.9 31 0.00067 35.8 10.4 36 75-112 3-38 (389)
407 PRK07261 topology modulation p 72.9 2.2 4.7E-05 39.6 1.8 18 77-95 1-18 (171)
408 TIGR02819 fdhA_non_GSH formald 72.8 24 0.00052 37.0 9.7 46 77-127 187-232 (393)
409 PRK13851 type IV secretion sys 72.7 11 0.00025 39.4 7.3 56 76-132 162-243 (344)
410 TIGR02130 dapB_plant dihydrodi 72.6 12 0.00026 38.4 7.2 29 78-108 2-30 (275)
411 cd02072 Glm_B12_BD B12 binding 72.5 19 0.00042 32.9 7.8 46 87-133 13-58 (128)
412 smart00829 PKS_ER Enoylreducta 72.5 28 0.0006 32.5 9.1 45 77-126 106-150 (288)
413 TIGR00655 PurU formyltetrahydr 72.5 27 0.00059 35.7 9.7 132 74-212 82-232 (280)
414 TIGR02197 heptose_epim ADP-L-g 72.4 5 0.00011 39.0 4.3 31 79-110 1-31 (314)
415 TIGR02817 adh_fam_1 zinc-bindi 72.4 38 0.00082 33.3 10.5 96 76-196 149-244 (336)
416 PRK05599 hypothetical protein; 72.4 33 0.00071 32.8 9.8 43 77-124 1-43 (246)
417 cd08278 benzyl_alcohol_DH Benz 72.3 27 0.00059 35.5 9.7 92 77-194 188-280 (365)
418 PRK07578 short chain dehydroge 72.2 14 0.00029 33.9 6.9 29 78-109 2-30 (199)
419 PF06506 PrpR_N: Propionate ca 72.2 12 0.00027 34.9 6.7 62 168-236 100-161 (176)
420 PRK05678 succinyl-CoA syntheta 72.1 29 0.00062 35.8 9.8 58 73-133 5-73 (291)
421 smart00382 AAA ATPases associa 72.0 13 0.00029 30.0 6.1 55 76-131 2-84 (148)
422 cd08285 NADP_ADH NADP(H)-depen 71.7 28 0.0006 34.9 9.5 93 76-194 167-261 (351)
423 PRK09310 aroDE bifunctional 3- 71.5 28 0.00061 37.9 10.2 116 76-236 332-448 (477)
424 PRK13900 type IV secretion sys 71.3 9.7 0.00021 39.6 6.3 100 76-194 160-261 (332)
425 cd08291 ETR_like_1 2-enoyl thi 70.9 30 0.00065 34.2 9.5 50 77-131 144-194 (324)
426 PTZ00354 alcohol dehydrogenase 70.9 40 0.00086 32.8 10.2 96 77-196 142-237 (334)
427 PRK06603 enoyl-(acyl carrier p 70.7 42 0.0009 32.5 10.2 82 76-176 8-94 (260)
428 PF02310 B12-binding: B12 bind 70.4 20 0.00044 30.4 7.1 87 87-175 14-111 (121)
429 cd02071 MM_CoA_mut_B12_BD meth 70.3 39 0.00085 29.7 9.1 45 88-133 14-58 (122)
430 PRK09189 uroporphyrinogen-III 70.2 52 0.0011 31.7 10.7 145 87-236 80-238 (240)
431 PRK08415 enoyl-(acyl carrier p 70.1 47 0.001 32.7 10.6 63 77-143 6-73 (274)
432 PF00625 Guanylate_kin: Guanyl 70.0 5.9 0.00013 36.7 4.0 31 76-107 2-34 (183)
433 TIGR01501 MthylAspMutase methy 69.7 33 0.00071 31.6 8.7 53 80-133 4-60 (134)
434 PF02602 HEM4: Uroporphyrinoge 69.7 20 0.00043 33.8 7.6 128 87-220 78-216 (231)
435 PRK08955 glyceraldehyde-3-phos 69.7 45 0.00096 35.1 10.8 109 76-197 2-118 (334)
436 COG0289 DapB Dihydrodipicolina 69.6 14 0.0003 37.9 6.8 40 76-116 2-41 (266)
437 cd08254 hydroxyacyl_CoA_DH 6-h 69.4 39 0.00085 33.0 9.8 92 77-194 167-258 (338)
438 TIGR00518 alaDH alanine dehydr 69.3 27 0.00059 36.7 9.2 45 76-125 167-211 (370)
439 cd08248 RTN4I1 Human Reticulon 69.2 39 0.00083 33.5 9.8 90 76-194 163-252 (350)
440 cd08266 Zn_ADH_like1 Alcohol d 69.1 78 0.0017 30.5 11.7 92 77-193 168-259 (342)
441 PRK02261 methylaspartate mutas 69.1 37 0.00081 30.9 9.0 53 80-133 6-62 (137)
442 cd01076 NAD_bind_1_Glu_DH NAD( 69.0 15 0.00032 36.3 6.7 47 75-124 30-85 (227)
443 PRK07984 enoyl-(acyl carrier p 69.0 53 0.0012 32.1 10.6 30 76-107 6-37 (262)
444 cd08260 Zn_ADH6 Alcohol dehydr 68.5 32 0.0007 34.2 9.2 94 76-194 166-259 (345)
445 cd08288 MDR_yhdh Yhdh putative 68.3 39 0.00085 32.9 9.5 50 76-130 147-196 (324)
446 PRK07634 pyrroline-5-carboxyla 68.2 16 0.00034 35.0 6.7 49 76-125 4-53 (245)
447 PRK11889 flhF flagellar biosyn 68.0 28 0.00062 38.0 9.1 87 75-181 240-333 (436)
448 PLN02827 Alcohol dehydrogenase 67.9 33 0.00072 35.4 9.4 93 76-192 194-287 (378)
449 PRK13771 putative alcohol dehy 67.8 33 0.00072 33.7 9.0 88 76-194 163-250 (334)
450 PRK06505 enoyl-(acyl carrier p 67.6 46 0.00099 32.6 9.9 63 77-143 8-75 (271)
451 KOG1371 UDP-glucose 4-epimeras 67.4 31 0.00067 36.7 8.9 69 75-145 1-74 (343)
452 cd08263 Zn_ADH10 Alcohol dehyd 67.3 44 0.00096 33.8 10.0 93 77-194 189-282 (367)
453 TIGR01202 bchC 2-desacetyl-2-h 67.3 21 0.00045 35.6 7.5 82 77-195 146-227 (308)
454 TIGR01757 Malate-DH_plant mala 67.2 10 0.00022 40.6 5.5 55 69-124 37-97 (387)
455 TIGR01019 sucCoAalpha succinyl 67.0 38 0.00082 34.8 9.4 28 75-102 5-32 (286)
456 PRK05086 malate dehydrogenase; 67.0 7.9 0.00017 39.7 4.6 33 77-109 1-34 (312)
457 cd02070 corrinoid_protein_B12- 66.7 36 0.00078 32.5 8.7 92 80-172 85-188 (201)
458 PRK06523 short chain dehydroge 66.6 7.9 0.00017 36.8 4.2 31 77-109 10-40 (260)
459 COG0563 Adk Adenylate kinase a 65.8 3.7 8E-05 39.0 1.8 30 77-109 1-30 (178)
460 PRK09009 C factor cell-cell si 65.5 9.2 0.0002 35.7 4.4 32 77-108 1-32 (235)
461 PRK12320 hypothetical protein; 65.5 7.6 0.00016 44.5 4.5 30 78-109 2-31 (699)
462 PRK06027 purU formyltetrahydro 65.3 26 0.00056 35.8 7.9 132 72-210 85-235 (286)
463 cd05289 MDR_like_2 alcohol deh 65.3 48 0.001 31.4 9.3 87 76-192 145-231 (309)
464 TIGR01915 npdG NADPH-dependent 65.1 16 0.00035 35.0 6.0 43 78-124 2-44 (219)
465 KOG1221 Acyl-CoA reductase [Li 65.1 14 0.0003 40.7 6.1 34 76-109 12-46 (467)
466 cd05291 HicDH_like L-2-hydroxy 65.0 39 0.00084 34.3 9.1 45 77-124 1-45 (306)
467 cd08262 Zn_ADH8 Alcohol dehydr 64.9 68 0.0015 31.7 10.6 94 77-192 163-257 (341)
468 cd01130 VirB11-like_ATPase Typ 64.8 21 0.00046 33.3 6.6 17 76-93 25-41 (186)
469 cd01338 MDH_choloroplast_like 64.5 6.3 0.00014 40.7 3.4 49 76-124 2-55 (322)
470 TIGR01500 sepiapter_red sepiap 64.5 29 0.00063 33.2 7.7 45 78-124 2-48 (256)
471 PRK05928 hemD uroporphyrinogen 64.4 56 0.0012 30.8 9.5 145 87-236 86-245 (249)
472 PRK08594 enoyl-(acyl carrier p 64.4 68 0.0015 31.0 10.3 65 76-142 7-76 (257)
473 PRK01222 N-(5'-phosphoribosyl) 64.3 1.2E+02 0.0025 29.6 11.8 120 84-208 35-163 (210)
474 cd08242 MDR_like Medium chain 64.2 44 0.00095 32.8 9.0 86 77-196 157-242 (319)
475 cd08277 liver_alcohol_DH_like 64.1 40 0.00088 34.3 9.0 91 77-191 186-277 (365)
476 cd02067 B12-binding B12 bindin 64.0 42 0.00091 28.8 7.9 46 87-133 13-58 (119)
477 PF10662 PduV-EutP: Ethanolami 63.5 4.6 9.9E-05 37.6 1.9 22 76-98 1-22 (143)
478 PRK07121 hypothetical protein; 63.3 4.8 0.0001 43.1 2.3 36 167-203 19-54 (492)
479 TIGR01035 hemA glutamyl-tRNA r 63.1 32 0.00069 36.7 8.4 46 77-126 181-226 (417)
480 PLN02702 L-idonate 5-dehydroge 63.0 77 0.0017 32.1 10.7 97 77-195 183-281 (364)
481 cd08298 CAD2 Cinnamyl alcohol 62.7 53 0.0011 32.3 9.3 87 77-198 169-255 (329)
482 TIGR03590 PseG pseudaminic aci 62.3 64 0.0014 32.2 9.9 93 78-179 33-129 (279)
483 PRK08958 sdhA succinate dehydr 61.8 5 0.00011 44.6 2.1 39 168-207 7-45 (588)
484 PF00437 T2SE: Type II/IV secr 61.6 26 0.00057 34.3 6.9 56 76-132 127-204 (270)
485 TIGR03013 EpsB_2 sugar transfe 61.4 69 0.0015 34.2 10.5 59 76-135 124-196 (442)
486 PRK08618 ornithine cyclodeamin 61.4 62 0.0013 33.2 9.8 33 160-196 186-218 (325)
487 TIGR03023 WcaJ_sugtrans Undeca 61.4 41 0.0009 35.7 8.8 60 75-135 127-201 (451)
488 cd08286 FDH_like_ADH2 formalde 61.4 52 0.0011 32.7 9.1 48 77-129 168-215 (345)
489 KOG0455 Homoserine dehydrogena 61.2 27 0.00058 36.3 7.0 113 78-205 5-125 (364)
490 cd08272 MDR6 Medium chain dehy 61.2 53 0.0012 31.4 8.8 90 76-192 145-234 (326)
491 PRK07206 hypothetical protein; 61.1 43 0.00094 34.8 8.8 57 75-134 1-79 (416)
492 PRK13940 glutamyl-tRNA reducta 61.0 41 0.00088 36.2 8.7 44 77-125 182-226 (414)
493 PF13905 Thioredoxin_8: Thiore 61.0 46 0.001 26.8 7.2 82 78-159 4-93 (95)
494 cd08240 6_hydroxyhexanoate_dh_ 60.6 75 0.0016 31.7 10.1 95 76-196 176-271 (350)
495 PRK12749 quinate/shikimate deh 60.5 37 0.0008 34.6 7.9 45 77-125 125-172 (288)
496 COG1087 GalE UDP-glucose 4-epi 60.4 40 0.00086 35.6 8.2 63 77-146 1-65 (329)
497 COG1064 AdhP Zn-dependent alco 60.4 60 0.0013 34.4 9.6 88 77-196 168-256 (339)
498 cd08236 sugar_DH NAD(P)-depend 60.3 78 0.0017 31.4 10.1 91 77-193 161-252 (343)
499 PRK06398 aldose dehydrogenase; 60.3 13 0.00027 35.8 4.4 31 77-109 7-37 (258)
500 PRK05752 uroporphyrinogen-III 60.0 60 0.0013 31.8 9.1 144 87-236 88-248 (255)
No 1
>PLN02696 1-deoxy-D-xylulose-5-phosphate reductoisomerase
Probab=100.00 E-value=5.1e-169 Score=1308.69 Aligned_cols=446 Identities=83% Similarity=1.307 Sum_probs=422.2
Q ss_pred CCCCCCccccccccccccccceeeeec-----CCCCCCCCCccccccccCCCCCCeeEEEEccCChHhHHHHHHHHhCCC
Q 012004 27 PKLSGGFPLKRKDNATATFGRIVQCSA-----QGPPPAWPGRAVTETFRKTWDGPKPISVLGSTGSIGTQTLDIVAEHED 101 (473)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd 101 (473)
++++++...++++. ....++|.+|+. +.||++|||++..++..+.|+++|||+|||||||||+||||||++|||
T Consensus 4 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~KkI~ILGSTGSIGtqtLdVI~~~pd 82 (454)
T PLN02696 4 PKLPGGFTTKRSSS-RQSRGRRAKCSVAGWSQNSPPPAWPGRAVVEPGRKGWDGPKPISLLGSTGSIGTQTLDIVAENPD 82 (454)
T ss_pred ccCCCcceeccccc-cccccccccccccccccCCCCccCccccccCCcccccCCccEEEEecCCcHhhHHHHHHHHhCcc
Confidence 47899999999988 677789999994 458999999998778889999999999999999999999999999999
Q ss_pred ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechhhHHHhhcCCCCCEEEEecccccC
Q 012004 102 KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAG 181 (473)
Q Consensus 102 ~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~aG 181 (473)
+|+|+||++|+|+++|++|+++|+|++|++.|++.+.+|++.|.+.+.+++++.|++|++++++.+++|+||+||||++|
T Consensus 83 ~f~vvaLaag~Ni~lL~~q~~~f~p~~v~v~d~~~~~~l~~~l~~~~~~~~vl~G~egl~~la~~~evDiVV~AIvG~aG 162 (454)
T PLN02696 83 KFKVVALAAGSNVTLLADQVRKFKPKLVAVRNESLVDELKEALADLDDKPEIIPGEEGIVEVARHPEAVTVVTGIVGCAG 162 (454)
T ss_pred ccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcCCCCCcEEEECHHHHHHHHcCCCCCEEEEeCccccc
Confidence 99999999999999999999999999999999999999999885422357899999999999999999999999999999
Q ss_pred cHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChh
Q 012004 182 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVE 261 (473)
Q Consensus 182 L~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e 261 (473)
|.||++||++||+|||||||||||||++|+++++++|++|+|||||||||||||+|+++++|+||||||||||||+||+|
T Consensus 163 L~pTl~AIkaGK~VALANKESLV~aG~lI~~~ak~~~~~IlPVDSEHsAIfQ~L~g~~~~~v~kiiLTASGGpFr~~~~e 242 (454)
T PLN02696 163 LKPTVAAIEAGKDIALANKETLIAGGPFVLPLAKKHGVKILPADSEHSAIFQCIQGLPEGGLRRIILTASGGAFRDWPVE 242 (454)
T ss_pred hHHHHHHHHCCCcEEEecHHHHHhhHHHHHHHHHHcCCeEeecchhhHHHHHHccCCCccCccEEEEECCchhccCCCHH
Confidence 99999999999999999999999999999999999999999999999999999999877789999999999999999999
Q ss_pred hhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhcCCCCCceeEEEcCCcceeEEEEecCCcEEEecCCCCc
Q 012004 262 KLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSIIHSMVETQDSSVIGQLGWPDM 341 (473)
Q Consensus 262 ~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~VvIHPQSiIHsmVef~DGSv~Aqlg~PDM 341 (473)
+|++||++|||+||||+||+||||||||||||||||||||||||+|||+|||||||||||||||||+|||++||||+|||
T Consensus 243 ~l~~vT~~~ALkHP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vvIHPqSiIHsmVef~DGS~~Aql~~pDM 322 (454)
T PLN02696 243 KLKEVKVADALKHPNWSMGKKITVDSATLMNKGLEVIEAHYLFGADYDDIDIVIHPQSIIHSMVETQDSSVLAQLGWPDM 322 (454)
T ss_pred HHhCCCHHHHhhCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECcCCeeeEEEEEcCCcEEEEecCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHHhCCCCC
Q 012004 342 RLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGY 421 (473)
Q Consensus 342 rlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~~~vlNAANEvAV~aFL~~kI~F 421 (473)
|+||+|||+||+|.++++..+++|||.++++|||++||++|||||+|||+|+++||++|+|||||||+||++||+|||+|
T Consensus 323 rlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rfP~l~La~~a~~~gg~~~~vlNAANEvAV~~FL~~kI~F 402 (454)
T PLN02696 323 RLPILYTMSWPDRVPCSEITWPRLDLCKLGSLTFKAPDNVKYPSMDLAYAAGRAGGTMTGVLSAANEKAVEMFIDEKIGY 402 (454)
T ss_pred HHHHHHHcCCccccccccCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCceEEEEhhhHHHHHHHHcCCCCc
Confidence 99999999999999643367899999999999999999999999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 012004 422 LDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSSGRSPVPA 473 (473)
Q Consensus 422 ~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a~~~~~~~~~~~~~~ 473 (473)
+||+++|+++|++|+......+|||||+++|.|+|+++++++.+.+.+|+.+
T Consensus 403 ~dI~~~i~~~l~~~~~~~~~~~sl~~i~~~d~~aR~~a~~~~~~~~~~~~~~ 454 (454)
T PLN02696 403 LDIFKVIELTCEAHKEELVTSPSLEDILHYDLWAREYAAELVESGGLSPVVA 454 (454)
T ss_pred hhHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCCCCC
Confidence 9999999999999963111335999999999999999999999999998764
No 2
>COG0743 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase [Lipid metabolism]
Probab=100.00 E-value=4.1e-164 Score=1237.72 Aligned_cols=382 Identities=54% Similarity=0.857 Sum_probs=371.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
||||+|||||||||+|||||+++|||+|+|+||++|+|+++|.+||++|+|++|++.|+..+..++..+. +++|+.
T Consensus 1 ~k~i~iLGSTGSIG~qtLdVi~~~p~~f~vval~ag~n~~~l~~q~~~f~P~~v~~~d~~~~~~l~~~~~----~~~v~~ 76 (385)
T COG0743 1 MKKLTILGSTGSIGTQTLDVIRRNPDKFEVVALAAGKNVELLAEQIREFKPKYVVIADESAAKELEDLLP----GTEVLV 76 (385)
T ss_pred CceEEEEecCCchhHHHHHHHHhCCCcEEEEEEecCCcHHHHHHHHHHhCCceEEecChHHHHHHHhhcc----CceEEe
Confidence 6899999999999999999999999999999999999999999999999999999999999999998875 589999
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhh
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL 235 (473)
|++|++++++.+++|+||+||||++||.||++|+++||+||||||||||+||+++|+.+|++|++|+|||||||||||||
T Consensus 77 G~~~l~e~a~~~~~d~Vm~AivG~aGL~pTlaAi~aGK~iaLANKEsLV~aG~l~~~~~k~~g~~llPVDSEH~AifQ~L 156 (385)
T COG0743 77 GEEGLCELAAEDDADVVMNAIVGAAGLLPTLAAIKAGKTIALANKESLVTAGELVMDAAKESGAQLLPVDSEHNAIFQCL 156 (385)
T ss_pred cHHHHHHHHhcCCCCEEeehhhhhcccHHHHHHHHcCCceeecchhhhhcccHHHHHHHHHcCCEEeccCchhHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhcCCCCCceeEEE
Q 012004 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (473)
Q Consensus 236 ~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~VvI 315 (473)
+|+..++|+||||||||||||+||+|+|.+|||+|||+|||||||+||||||||||||||||||||||||+|||+|||||
T Consensus 157 ~~~~~~~v~~iiLTASGGpFR~~~~~~L~~VT~eqAl~HPnWsMG~KITvDSATmmNKGLEvIEA~~LF~~~~~~IeVvI 236 (385)
T COG0743 157 QGETQKGVKKIILTASGGPFRDKSLEELANVTPEQALKHPNWSMGRKITVDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 236 (385)
T ss_pred CccccCcceEEEEecCCCCcCCCCHHHHccCCHHHHhcCCCCCCCCcccccHHHHhhhhHHHHHHHHHhCCCHHHeeEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCcEEEecCCCCchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHc
Q 012004 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRA 395 (473)
Q Consensus 316 HPQSiIHsmVef~DGSv~Aqlg~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~ 395 (473)
||||||||||||.|||++||||+||||+||+|||+||+|. +..+++|||.++++|+|++||++|||||+|||+|++.
T Consensus 237 HPQSiIHsmV~~~DGSviAqlg~pDMr~PI~yAl~~P~R~---~~~~~~ldf~~~~~L~Fe~pD~~rfp~l~LA~~a~~~ 313 (385)
T COG0743 237 HPQSIIHSMVEYVDGSVIAQLGPPDMRTPISYALAYPERV---PSAVEPLDFTKLSALTFEPPDTDRFPCLKLAYDAGEA 313 (385)
T ss_pred cccchheeeEEeccCCEEEecCCcchhhHHHHHhcCCccc---ccCccccchhhcCcceeeCCChhhcchHHHHHHHHHc
Confidence 9999999999999999999999999999999999999999 5678899999999999999999999999999999999
Q ss_pred CCCceeeeehhhHHHHHHHHhCCCCCccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 012004 396 GGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFS 465 (473)
Q Consensus 396 Gg~~~~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a~~~~~~ 465 (473)
||++|+|||||||+||++||+|||+|+||+++|+++|+++.... .+.|+|||+++|.|||+.+++.+.+
T Consensus 314 gg~~~~vlNAANE~AV~aFL~~~I~F~dI~~iie~~l~~~~~~~-~~~sld~vl~~D~~aR~~a~~~~~~ 382 (385)
T COG0743 314 GGAMPTVLNAANEVAVAAFLAGKIGFLDIARIIEKALERHDVYA-EPQSLDDVLEVDAEARERARECIAR 382 (385)
T ss_pred CCchhhhHhhhhHHHHHHHHhCCCCcccHHHHHHHHHHhcccCC-CCCCHHHHHHhhHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999997422 5789999999999999999876654
No 3
>TIGR00243 Dxr 1-deoxy-D-xylulose 5-phosphate reductoisomerase. 1-deoxy-D-xylulose 5-phosphate is converted to 2-C-methyl-D-erythritol 4-phosphate in the presence of NADPH. It is involved in the synthesis of isopentenyl diphosphate (IPP), a basic building block in isoprenoid, thiamin, and pyridoxal biosynthesis.
Probab=100.00 E-value=3.1e-162 Score=1237.77 Aligned_cols=385 Identities=52% Similarity=0.786 Sum_probs=369.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
||+|+|||||||||+||||||++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.+++..+.+.+.+++|+.
T Consensus 1 Mk~i~IlGsTGSIG~qtL~Vi~~~~~~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~d~~~~~~l~~~l~~~~~~~~v~~ 80 (389)
T TIGR00243 1 MKQIVILGSTGSIGKSTLDVVRHNPDHFQVVALSAGKNVALMVEQILEFRPKFVAIDDEASLKDLKTMLQQQGSRTEVLV 80 (389)
T ss_pred CceEEEEecChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHcCCCEEEEcCHHHHHHHHHHhhcCCCCcEEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998742233578999
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhh
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL 235 (473)
|++|++++++.+++|+||+||||++||.||++||++||+|||||||||||||++||+++++++++|+|||||||||||||
T Consensus 81 G~~~l~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKEsLV~aG~li~~~a~~~~~~I~PVDSEHsAIfQ~L 160 (389)
T TIGR00243 81 GEEGICEMAALEDVDQVMNAIVGAAGLLPTLAAIRAGKTIALANKESLVTAGHLFLDAVKKYGVQLLPVDSEHNAIFQSL 160 (389)
T ss_pred CHHHHHHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhHHHhhHHHHHHHHHHcCCeEEeecchHhHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred c-CCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhcCCCCCceeEE
Q 012004 236 Q-GLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEII 314 (473)
Q Consensus 236 ~-g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~Vv 314 (473)
+ |++.++|+||||||||||||+||+|+|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||
T Consensus 161 ~~g~~~~~v~kiiLTASGGpFr~~~~e~l~~vt~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~~~~d~I~vv 240 (389)
T TIGR00243 161 QHGLEELGVVSIILTASGGAFRDTPLEDLPTVTPQQALKHPNWSMGRKITIDSATMMNKGLEYIEARWLFGASAEQIDVL 240 (389)
T ss_pred ccCCCcccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEE
Confidence 9 765567999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EcCCcceeEEEEecCCcEEEecCCCCchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHH
Q 012004 315 IHPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGR 394 (473)
Q Consensus 315 IHPQSiIHsmVef~DGSv~Aqlg~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~ 394 (473)
|||||||||||||+|||++||||.||||+||+|||+||+|. +...++|||.++++|||++||++|||||+|||+|++
T Consensus 241 IHpqSiIHsmVef~DGSv~aql~~pDMrlPI~yAL~yP~R~---~~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~ea~~ 317 (389)
T TIGR00243 241 IHPQSIIHSMVEFQDGSVIAQLGEPDMRLPIAYAMAWPNRV---NSGVKPLDLCKLSALTFEEPDFDRYPCLKLAMEAFK 317 (389)
T ss_pred ECCCCceeEEEEEcCccEEEEeCCCCcHHHHHHHcCCcccc---cCCCCCcCccccCCCeeeCCChhhCchHHHHHHHHh
Confidence 99999999999999999999999999999999999999999 456899999999999999999999999999999999
Q ss_pred cCCCceeeeehhhHHHHHHHHhCCCCCccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 012004 395 AGGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFS 465 (473)
Q Consensus 395 ~Gg~~~~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a~~~~~~ 465 (473)
.||++|+|||||||+||++||+|||+|+||+++|+++|+++.. ..+.|||||+++|.|+|++|++.+..
T Consensus 318 ~gg~~p~vlNAANEvAV~~FL~~kI~F~dI~~~i~~~l~~~~~--~~~~sledi~~~d~~aR~~a~~~~~~ 386 (389)
T TIGR00243 318 AGQAATTVLNAANEVAVAAFLAQQIRFLDIAALISKVLYRMQP--RKPQSLEDVLEVDKNARETARKNVAR 386 (389)
T ss_pred cCCCceEEEEHHHHHHHHHHHcCCCCcchHHHHHHHHHHhccC--CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 9999999999999999999999999999999999999999962 23469999999999999999987654
No 4
>PRK12464 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=1.4e-160 Score=1224.56 Aligned_cols=378 Identities=49% Similarity=0.845 Sum_probs=364.6
Q ss_pred EEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechhhH
Q 012004 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGV 160 (473)
Q Consensus 81 ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~egl 160 (473)
|||||||||+||||||++|||+|+|+||+||+|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .+++|+.|++|+
T Consensus 1 ILGsTGSIG~qtLdVi~~~~d~f~v~~Laa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~G~~~l 78 (383)
T PRK12464 1 ILGSTGSIGTSALDVVSAHPEHFKVVGLTANYNIELLEQQIKRFQPRIVSVADKELADTLRTRLSA--NTSKITYGTDGL 78 (383)
T ss_pred CCccccHHHHHHHHHHHhCccccEEEEEECCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhccC--CCcEEEECHHHH
Confidence 799999999999999999999999999999999999999999999999999999999999988742 347999999999
Q ss_pred HHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhhcCCCC
Q 012004 161 IEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGLPE 240 (473)
Q Consensus 161 ~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL~g~~~ 240 (473)
+++++.+++|+||+||||++||.||++||++||+|||||||||||||++||+++++++++|+|||||||||||||+|++.
T Consensus 79 ~~l~~~~~~D~vv~AivG~aGL~pt~~Ai~~gk~iaLANKESLV~aG~li~~~~~~~~~~iiPVDSEHsAIfQ~L~~~~~ 158 (383)
T PRK12464 79 IAVATHPGSDLVLSSVVGAAGLLPTIEALKAKKDIALANKETLVAAGHIVTDLAKQNGCRLIPVDSEHSAIFQCLNGENN 158 (383)
T ss_pred HHHHcCCCCCEEEEhhhcHhhHHHHHHHHHCCCcEEEechhhHhhhHHHHHHHHHHcCCeEEeechhHHHHHHHccCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999866
Q ss_pred CccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhcCCCCCceeEEEcCCcc
Q 012004 241 GALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHPQSI 320 (473)
Q Consensus 241 ~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~VvIHPQSi 320 (473)
++|+||||||||||||+||+|+|++|||+|||+||||+||+||||||||||||||||||||||||+||||||||||||||
T Consensus 159 ~~v~kiiLTASGGpFr~~~~e~l~~vT~~~AL~HP~W~MG~KITIDSATmmNKglEvIEA~~LF~i~~d~I~vvIHPqSi 238 (383)
T PRK12464 159 KEIDKLIVTASGGAFRDKTREEMATLTAKDALKHPNWLMGAKLTIDSATLMNKGFEVIEAHWLFDIPYEKIDVLIHKESI 238 (383)
T ss_pred ccccEEEEECCCcccCCCCHHHHhCCCHHHHhcCCCCcCCCeeeeehHhhhhhhHHHHHHHHHcCCCHHHeEEEECCCCc
Confidence 77999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEEecCCcEEEecCCCCchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCce
Q 012004 321 IHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMT 400 (473)
Q Consensus 321 IHsmVef~DGSv~Aqlg~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~~ 400 (473)
|||||||+|||++||||.||||+||+|||+||+|. +..+++|||.++++|||++||++|||||+|||+|+++||++|
T Consensus 239 VHsmVef~DGSv~aql~~pDMr~PI~yAL~yP~R~---~~~~~~ldl~~~~~L~F~~pD~~rfP~l~La~~a~~~gg~~p 315 (383)
T PRK12464 239 IHSLVEFIDGSVLAQLGAPDMRMPIQYAFHYPTRL---PSSYEKLNLLEIGSLHFEKPDLEKFPCLQYAYEAGKIGGTTP 315 (383)
T ss_pred eeEEEEEcCccEEEEeCCCCcHHHHHHHcCCcccc---CCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHhCCCce
Confidence 99999999999999999999999999999999999 456899999999999999999999999999999999999999
Q ss_pred eeeehhhHHHHHHHHhCCCCCccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHHHHHHHh
Q 012004 401 GVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFS 465 (473)
Q Consensus 401 ~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a~~~~~~ 465 (473)
+|||||||+||++||+|||+|+||+++|+++|+++.. ...+|||||+++|+|+|+++++++.+
T Consensus 316 ~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~l~~~~~--~~~~sl~~i~~~d~~aR~~a~~~~~~ 378 (383)
T PRK12464 316 AVLNAANEIANALFLKNRIAFFDIEKTIYATLEAHHN--VKDPSLDDILEADAWARRYANQLLIK 378 (383)
T ss_pred EEEEhhhHHHHHHHHcCCCCchhHHHHHHHHHHhccc--cCCCCHHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999962 23359999999999999999997744
No 5
>PRK05447 1-deoxy-D-xylulose 5-phosphate reductoisomerase; Provisional
Probab=100.00 E-value=1.1e-151 Score=1162.57 Aligned_cols=383 Identities=57% Similarity=0.890 Sum_probs=370.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
||+|+|||||||||+|||||++++||+|+|+||+|++|+++|.+|+++|+|++|++.|++.+.+|++.+.+ .+++++.
T Consensus 1 mk~VaILGsTGSIG~~tL~vi~~~p~~f~VvaLaa~~n~~~l~~q~~~f~p~~v~i~~~~~~~~l~~~l~~--~~~~v~~ 78 (385)
T PRK05447 1 MKRITILGSTGSIGTQTLDVIRRNPDRFRVVALSAGKNVELLAEQAREFRPKYVVVADEEAAKELKEALAA--AGIEVLA 78 (385)
T ss_pred CceEEEEcCChHHHHHHHHHHHhCccccEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHhhcc--CCceEEE
Confidence 58999999999999999999999999999999999999999999999999999999999999999998753 3578999
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhh
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL 235 (473)
|++|++++++.+++|+||+||+|++||.||++||++||+|+|||||+|||||++|+++++++|++|+|||||||||||||
T Consensus 79 G~~~~~~l~~~~~vD~Vv~Ai~G~aGl~ptl~Ai~aGK~VaLANKEslV~aG~~i~~~a~~~g~~i~PVDSEh~ai~q~l 158 (385)
T PRK05447 79 GEEGLCELAALPEADVVVAAIVGAAGLLPTLAAIRAGKRIALANKESLVCAGELVMDAAKKSGAQILPVDSEHSAIFQCL 158 (385)
T ss_pred ChhHHHHHhcCCCCCEEEEeCcCcccHHHHHHHHHCCCcEEEeCHHHHHhhHHHHHHHHHHcCCeEEEECHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHHhhhcCCCCCceeEEE
Q 012004 236 QGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIII 315 (473)
Q Consensus 236 ~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~VvI 315 (473)
++++.++|++|+|||||||||+|++|+|++|||+|||+||||+||+|||||||||||||||+||||||||+|||||||||
T Consensus 159 ~~~~~~~i~~iilTASGGpFr~~~~~~l~~vt~~~al~HPnW~MG~kitiDSAtm~NKgle~IEA~~Lf~~~~~~I~vvI 238 (385)
T PRK05447 159 PGEKQEGVEKIILTASGGPFRDWPLEELANVTPEQALKHPNWSMGRKITIDSATMMNKGLEVIEAHWLFGLPYEQIEVVI 238 (385)
T ss_pred cCCCccccceEEEecCCCcccCCCHHHHhcCCHHHHhcCCCCCCCCceeecHHHHhcchHHHHhHHHHcCCChhhEEEEE
Confidence 99877789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCcceeEEEEecCCcEEEecCCCCchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHc
Q 012004 316 HPQSIIHSMVETQDSSVIGQLGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRA 395 (473)
Q Consensus 316 HPQSiIHsmVef~DGSv~Aqlg~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~ 395 (473)
||||||||||||+|||++||||.||||+||+|||+||+|. +...++|||.++++|||++||++|||||+|||+|++.
T Consensus 239 HpqSivHsmVef~DGsv~aql~~pDMr~pI~yaL~~P~R~---~~~~~~ld~~~~~~L~F~~pd~~rfp~l~La~~a~~~ 315 (385)
T PRK05447 239 HPQSIIHSMVEYVDGSVLAQLGPPDMRLPIAYALAYPERV---PSGVKPLDLTKLGTLTFEPPDFERFPCLKLAYEALKA 315 (385)
T ss_pred CCcCceeEEEEEeCCcEEEeeCCCCcHHHHHHHcCCcccC---CCCCCCcCccccCCCeeeCCChhhCcHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999 5678999999999999999999999999999999999
Q ss_pred CCCceeeeehhhHHHHHHHHhCCCCCccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHHHHHHHhc
Q 012004 396 GGTMTGVLSAANEKAVEMFIDEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYAAGLQFSS 466 (473)
Q Consensus 396 Gg~~~~vlNAANEvAV~aFL~~kI~F~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a~~~~~~~ 466 (473)
||++|+|||||||+||++||+|||+|+||+++|+++|+++. ..+.|||||+++|+|+|++|++++...
T Consensus 316 g~~~~~vlNAANEvAV~~FL~~kI~F~dI~~~i~~~l~~~~---~~~~sl~~i~~~d~~aR~~a~~~~~~~ 383 (385)
T PRK05447 316 GGTAPAVLNAANEVAVAAFLAGKIGFLDIADLIEKVLERHN---PEPPSLEDVLEADAEARERARELIARL 383 (385)
T ss_pred CCCceeEeEHHHHHHHHHHHcCCCCchhHHHHHHHHHHhhc---CCCCCHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999984 235699999999999999999987654
No 6
>PF08436 DXP_redisom_C: 1-deoxy-D-xylulose 5-phosphate reductoisomerase C-terminal; InterPro: IPR013644 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found to the C terminus of IPR013512 from INTERPRO domains in bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0005515 protein binding; PDB: 3AUA_A 3AU9_B 3AU8_B 3A14_A 3A06_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A ....
Probab=100.00 E-value=4.7e-57 Score=374.32 Aligned_cols=84 Identities=73% Similarity=1.126 Sum_probs=77.8
Q ss_pred EeecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHHH
Q 012004 221 ILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIEA 300 (473)
Q Consensus 221 IlPVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIEA 300 (473)
|+|||||||||||||++++.++|++|||||||||||++++++|++||++|||+||||+||+|||||||||||||||||||
T Consensus 1 i~PvDSEHsAifQ~L~~~~~~~v~~i~lTASGGpFr~~~~~~l~~vt~~~al~HP~W~MG~KITiDSATm~NKglEviEA 80 (84)
T PF08436_consen 1 ILPVDSEHSAIFQCLQGEKREEVEKIILTASGGPFRDKPREELKNVTPEQALKHPNWSMGKKITIDSATMMNKGLEVIEA 80 (84)
T ss_dssp EEE-SHHHHHHHHHSGHHHHCTEEEEEEEE--STTTTSHHHHHTT--HHHHTSSSSSCCHHHHHHHHHTTHHHHHHHHHH
T ss_pred CcccccHHHHHHHHCCCCCccccCEEEEECcchhhCCCCHHHHcCCCHHHHhhCCCCcCCCeeeechHHHHHHhHHHHHH
Confidence 79999999999999999888899999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhc
Q 012004 301 HYLF 304 (473)
Q Consensus 301 ~~LF 304 (473)
||||
T Consensus 81 ~~LF 84 (84)
T PF08436_consen 81 HWLF 84 (84)
T ss_dssp HHHH
T ss_pred HhhC
Confidence 9999
No 7
>PF02670 DXP_reductoisom: 1-deoxy-D-xylulose 5-phosphate reductoisomerase; InterPro: IPR013512 1-deoxy-D-xylulose 5-phosphate reductoisomerase synthesises 2-C-methyl-D-erythritol 4-phosphate from 1-deoxy-D-xylulose 5-phosphate in a single step by intramolecular rearrangement and reduction and is responsible for terpenoid biosynthesis in some organisms []. In Arabidopsis thaliana 1-deoxy-D-xylulose 5-phosphate reductoisomerase is the first committed enzyme of the non-mevalonate pathway for isoprenoid biosynthesis. The enzyme requires Mn2+, Co2+ or Mg2+ for activity, with the first being most effective. This domain is found at the N terminus of bacterial and plant 1-deoxy-D-xylulose 5-phosphate reductoisomerases.; GO: 0070402 NADPH binding, 0055114 oxidation-reduction process; PDB: 1R0K_D 1R0L_C 3A14_A 3A06_A 3AUA_A 3AU9_B 3AU8_B 3IIE_A 2Y1D_B 4AIC_A ....
Probab=100.00 E-value=8.6e-47 Score=337.83 Aligned_cols=129 Identities=57% Similarity=0.852 Sum_probs=118.8
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechh
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~e 158 (473)
|+|||||||||+||||||++|||+|+|+||++|+|+++|.+|+++|+|++|++.|++.+..|++.+...+.+++++.|+|
T Consensus 1 i~ILGsTGSIG~qtLdVi~~~~d~f~v~~Lsa~~n~~~L~~q~~~f~p~~v~i~~~~~~~~l~~~~~~~~~~~~v~~G~~ 80 (129)
T PF02670_consen 1 IAILGSTGSIGTQTLDVIRKHPDKFEVVALSAGSNIEKLAEQAREFKPKYVVIADEEAYEELKKALPSKGPGIEVLSGPE 80 (129)
T ss_dssp EEEESTTSHHHHHHHHHHHHCTTTEEEEEEEESSTHHHHHHHHHHHT-SEEEESSHHHHHHHHHHHHHTTSSSEEEESHH
T ss_pred CEEEcCCcHHHHHHHHHHHhCCCceEEEEEEcCCCHHHHHHHHHHhCCCEEEEcCHHHHHHHHHHhhhcCCCCEEEeChH
Confidence 78999999999999999999999999999999999999999999999999999999999999999864456799999999
Q ss_pred hHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeecc
Q 012004 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (473)
Q Consensus 159 gl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG 207 (473)
|++++++++++|+||+||||++||.||++||++||+|||||||||||||
T Consensus 81 ~l~~~~~~~~~D~vv~Ai~G~aGL~pt~~Ai~~gk~iaLANKEsLV~aG 129 (129)
T PF02670_consen 81 GLEELAEEPEVDIVVNAIVGFAGLKPTLAAIKAGKDIALANKESLVCAG 129 (129)
T ss_dssp HHHHHHTHTT-SEEEE--SSGGGHHHHHHHHHTTSEEEE--SHHHHHHH
T ss_pred HHHHHhcCCCCCEEEEeCcccchHHHHHHHHHCCCeEEEechhhhhcCC
Confidence 9999999999999999999999999999999999999999999999998
No 8
>PF13288 DXPR_C: DXP reductoisomerase C-terminal domain; PDB: 3A14_A 3A06_A 3IIE_A 2Y1D_B 4AIC_A 2JD0_B 2Y1C_B 2JD1_A 2JCX_A 2Y1G_A ....
Probab=100.00 E-value=4.8e-45 Score=322.94 Aligned_cols=121 Identities=51% Similarity=0.819 Sum_probs=102.4
Q ss_pred cCCCCchHHHHhcCCCCCccccCCCCCCCCCcCCCCCceecCCCCCCCchHHHHHHHHHcCCCceeeeehhhHHHHHHHH
Q 012004 336 LGWPDMRLPIIYTMSWPERIYCSELTWPRLDLSKLGSLTFVAPDTAKYPSVNLAYAAGRAGGTMTGVLSAANEKAVEMFI 415 (473)
Q Consensus 336 lg~PDMrlPI~yAL~yP~R~~~~~~~~~~ldl~~~~~LtF~~pD~~rFP~l~LA~~a~~~Gg~~~~vlNAANEvAV~aFL 415 (473)
||.||||+||+|||+||+|. +..+++|||.++++|||++||++|||||+|||+|++.||++|+|||||||+||++||
T Consensus 1 ls~PDMrlPI~yAL~~P~r~---~~~~~~ld~~~~~~L~F~~pd~~rfP~l~LA~~a~~~gg~~~~vlNAANEvAV~aFL 77 (121)
T PF13288_consen 1 LSPPDMRLPIAYALSYPERL---PSPVEPLDFTKLGSLTFEEPDFERFPCLKLAYEALRKGGTAPIVLNAANEVAVEAFL 77 (121)
T ss_dssp E-SS-THHHHHHHHHTTS-----TTSS----CCCHEEEEEBE--TTT-CHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH
T ss_pred CCCcccHHHHHHHcCCcccC---CCCCCCCChhhccCceecCCChHhCcHHHHHHHHHHccCcHHHHHHHHHHHHHHHHH
Confidence 79999999999999999998 567899999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCCccHHHHHHHHHHccccCCCCCCCHHHHHHHHHHHHHHH
Q 012004 416 DEKIGYLDIFKVVELTCDKHKADLVTSPSLEDIIHYDAWAREYA 459 (473)
Q Consensus 416 ~~kI~F~dI~~ii~~~l~~~~~~~~~~~sledIl~~D~~aR~~a 459 (473)
+|||+|+||+++|+++|++++.....++|||||+++|+|||++|
T Consensus 78 ~~kI~F~~I~~~i~~~l~~~~~~~~~~~~ledi~~~d~~aR~~A 121 (121)
T PF13288_consen 78 EGKISFLDIPDIIEKVLERFKNSKINPNSLEDILEIDAWARRYA 121 (121)
T ss_dssp TTSS-TTHHHHHHHHHHHCCCCGGSCHSSHHHHHHHHHHHHHHH
T ss_pred HcCCCHhhHHHHHHHHHHhhhccCCCCCCHHHHHHHHHHHHHhC
Confidence 99999999999999999999843214589999999999999986
No 9
>PRK06349 homoserine dehydrogenase; Provisional
Probab=98.17 E-value=6.7e-06 Score=86.70 Aligned_cols=159 Identities=21% Similarity=0.344 Sum_probs=105.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~ 147 (473)
+-||+|+| +|.||+..++++.++++ +++|+++... |.++. +.+....
T Consensus 3 ~i~VgiiG-~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~-~~~~~----~~~~~~~------------------- 57 (426)
T PRK06349 3 PLKVGLLG-LGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVR-DLEKD----RGVDLPG------------------- 57 (426)
T ss_pred eEEEEEEe-eCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeC-Chhhc----cCCCCcc-------------------
Confidence 35899999 79999999999988763 6899998764 43331 1111100
Q ss_pred CCCcEEEechhhHHHhhcCCCCCEEEEecccc-cCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEe----
Q 012004 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVGC-AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL---- 222 (473)
Q Consensus 148 ~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~-aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~Il---- 222 (473)
..+. +...++...+++|+||.++.|. .+..-+.+|+++||.|..+||..+..-|+-+.++|+++|+.+.
T Consensus 58 ---~~~~---~d~~~ll~d~~iDvVve~tg~~~~~~~~~~~aL~~GkhVVtaNK~~~a~~~~eL~~lA~~~gv~l~fEas 131 (426)
T PRK06349 58 ---ILLT---TDPEELVNDPDIDIVVELMGGIEPARELILKALEAGKHVVTANKALLAVHGAELFAAAEEKGVDLYFEAA 131 (426)
T ss_pred ---ccee---CCHHHHhhCCCCCEEEECCCCchHHHHHHHHHHHCCCeEEEcCHHHHHHHHHHHHHHHHHcCCcEEEEEE
Confidence 0111 2245566778899999998663 3455577999999999999998888889999999999998876
Q ss_pred -----ecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhh--hcCCHHHHhc
Q 012004 223 -----PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK 273 (473)
Q Consensus 223 -----PVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L--~~vT~~~ALk 273 (473)
|+ +..+-++|.+ +.|.+|.=-=+|= -++=+.+| +..+.+|||+
T Consensus 132 V~ggiPi---i~~l~~~l~~---~~I~~I~GIlnGT--~nyIl~~m~~~g~~f~~al~ 181 (426)
T PRK06349 132 VAGGIPI---IKALREGLAA---NRITRVMGIVNGT--TNYILTKMTEEGLSFEDALK 181 (426)
T ss_pred eeccCch---HHHHHhhccc---CCeeEEEEEEeCc--HHHHHhhhhhcCCCHHHHHH
Confidence 22 3334444444 3455553111221 11225555 4677788775
No 10
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=97.90 E-value=2.8e-06 Score=73.27 Aligned_cols=110 Identities=24% Similarity=0.312 Sum_probs=72.9
Q ss_pred cCChHhHHHHHHHHhCCC--ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechhhHH
Q 012004 84 STGSIGTQTLDIVAEHED--KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVI 161 (473)
Q Consensus 84 STGSIG~qtLdVi~~~pd--~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~egl~ 161 (473)
.+|.||++.++.+.+.++ +|+|++++..+ ..+... ...... +..+... +.
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~--~~~~~~-------------------~~~~~~----~~~~~~~---~~ 52 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS--MLISKD-------------------WAASFP----DEAFTTD---LE 52 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS--EEEETT-------------------HHHHHT----HSCEESS---HH
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC--chhhhh-------------------hhhhcc----cccccCC---HH
Confidence 369999999999999875 69999988765 111111 111111 0123323 33
Q ss_pred HhhcCCCCCEEEEecccccCc-HHHHHHHHcCCcccccccceee--eccccchHHHhhcCCeEe
Q 012004 162 EAARHPDAVTVVTGIVGCAGL-KPTVAAIEAGKDIALANKETLI--AGGPFVLPLAHKHNIKIL 222 (473)
Q Consensus 162 ~la~~~~~D~Vv~AIvG~aGL-~ptl~Ai~~GK~IaLANKESLV--~aG~li~~~a~~~~~~Il 222 (473)
++....++|+||.+ .|...+ .-...++++|+.|..+||+.+. .-++-+.++|+++|++++
T Consensus 53 ~~~~~~~~dvvVE~-t~~~~~~~~~~~~L~~G~~VVt~nk~ala~~~~~~~L~~~A~~~g~~~~ 115 (117)
T PF03447_consen 53 ELIDDPDIDVVVEC-TSSEAVAEYYEKALERGKHVVTANKGALADEALYEELREAARKNGVRIY 115 (117)
T ss_dssp HHHTHTT-SEEEE--SSCHHHHHHHHHHHHTTCEEEES-HHHHHSHHHHHHHHHHHHHHT-EEE
T ss_pred HHhcCcCCCEEEEC-CCchHHHHHHHHHHHCCCeEEEECHHHhhhHHHHHHHHHHHHHcCCEEE
Confidence 44443479999999 444443 3467899999999999999999 899999999999998874
No 11
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.87 E-value=6.8e-05 Score=76.94 Aligned_cols=211 Identities=21% Similarity=0.271 Sum_probs=131.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCC--------CceEEEEEeccC---------CHHHHHHHHHhhCCCEEEEeCcccHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLD 138 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~p--------d~f~VvaLaa~~---------Nv~~L~~q~~~f~P~~v~v~de~~~~ 138 (473)
+-||+|+|. |-||+..++.+++++ -+++|+|++-.+ +.+.+.+..+++..
T Consensus 2 ~i~V~IiG~-G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~~~~~~~~~~------------ 68 (341)
T PRK06270 2 EMKIALIGF-GGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELALKVKEETGK------------ 68 (341)
T ss_pred eEEEEEECC-CHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHHHHHHhccCC------------
Confidence 358999995 999999999998764 269999987532 33333333332210
Q ss_pred HHHHHHhcCCCCcEEEe---chhhHHHhhcCCCCCEEEEeccc-----ccCcHHHHHHHHcCCcccccccceeeeccccc
Q 012004 139 EIKEALANVEEKPEILA---GEQGVIEAARHPDAVTVVTGIVG-----CAGLKPTVAAIEAGKDIALANKETLIAGGPFV 210 (473)
Q Consensus 139 ~l~~~l~~~~~~~~v~~---G~egl~~la~~~~~D~Vv~AIvG-----~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li 210 (473)
...+. ....+.++...+++|+||.+..- -.+..-..+|+++||.|..+||.-+-.-++-+
T Consensus 69 ------------~~~~~~~~~~~d~~ell~~~~~DvVvd~T~s~~~~~~~a~~~~~~aL~~GkhVVtaNK~pla~~~~eL 136 (341)
T PRK06270 69 ------------LADYPEGGGEISGLEVIRSVDADVVVEATPTNIETGEPALSHCRKALERGKHVVTSNKGPLALAYKEL 136 (341)
T ss_pred ------------cccCccccccCCHHHHhhccCCCEEEECCcCcccccchHHHHHHHHHHCCCEEEcCCcHHHHhhHHHH
Confidence 00000 12245566667789999998753 22366678999999999999999888878889
Q ss_pred hHHHhhcCCeEeeccc---chhhHHHhhcC-CCCCccceEEEEecCCCCCCCChhhh--hcCCHHHHhcCCCCCCC----
Q 012004 211 LPLAHKHNIKILPADS---EHSAIFQCIQG-LPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALKHPNWSMG---- 280 (473)
Q Consensus 211 ~~~a~~~~~~IlPVDS---EHsAIfQcL~g-~~~~~v~kiiLTASGGPFr~~~~e~L--~~vT~~~ALkHPnW~MG---- 280 (473)
.++|+++|..+.- .+ -+.-+++.|+. ...+.|.+|.=-=||=- ++=+.+| +..+.+|||+. -..+|
T Consensus 137 ~~~A~~~g~~~~~-ea~v~~glPii~~l~~~l~g~~I~~I~GIlnGT~--nyIl~~m~~~g~~f~~al~~-Aq~~G~aE~ 212 (341)
T PRK06270 137 KELAKKNGVRFRY-EATVGGAMPIINLAKETLAGNDIKSIKGILNGTT--NYILTRMEEEGLSYEQALAE-AQELGYAEA 212 (341)
T ss_pred HHHHHHcCCEEEE-eeeeeechhHHHHHHhhcccCceEEEEEEEeCcH--HHHHHHHhhcCCCHHHHHHH-HHHcCCCCC
Confidence 9999999987761 10 13345666642 22345666532222211 1224555 67888998862 11222
Q ss_pred -cccccchhhhhhhhHHHHHHhhhcCCCCCceeEEEcC
Q 012004 281 -KKITVDSATLFNKGLEVIEAHYLFGAEYDNIEIIIHP 317 (473)
Q Consensus 281 -~KITIDSATmmNKgLEvIEA~~LF~i~~d~I~VvIHP 317 (473)
+.--||---...|. +|=|+.+||.+.+-=||-+++
T Consensus 213 DP~~D~~G~D~a~Kl--~Ila~~~~g~~~~~~~v~~~g 248 (341)
T PRK06270 213 DPTYDVEGIDAALKV--VILANSILGADLTIKDVEVEG 248 (341)
T ss_pred CCCCCCccHHHHHHH--HHHHHHHcCCCCCHHHeeecC
Confidence 11233333445666 788999999876544455543
No 12
>PRK11579 putative oxidoreductase; Provisional
Probab=97.81 E-value=0.0018 Score=65.72 Aligned_cols=209 Identities=15% Similarity=0.183 Sum_probs=132.5
Q ss_pred eeEEEEccCChHhH-HHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGT-QTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~-qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
-||+|+|. |.||. ..+..+++.|+ ++|+|++. .|.++.. .+|.. +.++
T Consensus 5 irvgiiG~-G~i~~~~~~~~~~~~~~-~~l~av~d-~~~~~~~---~~~~~------------------------~~~~- 53 (346)
T PRK11579 5 IRVGLIGY-GYASKTFHAPLIAGTPG-LELAAVSS-SDATKVK---ADWPT------------------------VTVV- 53 (346)
T ss_pred ceEEEECC-CHHHHHHHHHHHhhCCC-CEEEEEEC-CCHHHHH---hhCCC------------------------Ccee-
Confidence 48999995 99998 46788888764 99999865 4555432 12210 1111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeec--cccchHHHhhcCCeEeec-----ccch
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPA-----DSEH 228 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~a--G~li~~~a~~~~~~IlPV-----DSEH 228 (473)
+.+.++...+++|.|+.+..=..-..-+.+|+++||-|.. .|-.-... ..-+.++|+++|..+... +..+
T Consensus 54 --~~~~ell~~~~vD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~t~~ea~~l~~~a~~~g~~l~v~~~~R~~p~~ 130 (346)
T PRK11579 54 --SEPQHLFNDPNIDLIVIPTPNDTHFPLAKAALEAGKHVVV-DKPFTVTLSQARELDALAKSAGRVLSVFHNRRWDSDF 130 (346)
T ss_pred --CCHHHHhcCCCCCEEEEcCCcHHHHHHHHHHHHCCCeEEE-eCCCCCCHHHHHHHHHHHHHhCCEEEEEeeccCCHHH
Confidence 2345566677899999998877888889999999999874 66543333 356678899998776544 4556
Q ss_pred hhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhcCCC
Q 012004 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (473)
Q Consensus 229 sAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (473)
..+-|.++...-.+|..+ ++.-+-++.. ..++|..-+. -..+.|++-|--.|- ++||||-
T Consensus 131 ~~~k~~i~~g~iG~i~~~--~~~~~~~~~~--------------~~~~w~~~~~--~ggG~l~d~g~H~id~~~~l~G~- 191 (346)
T PRK11579 131 LTLKALLAEGVLGEVAYF--ESHFDRFRPQ--------------VRQRWREQGG--PGSGIWYDLAPHLLDQAIQLFGL- 191 (346)
T ss_pred HHHHHHHhcCCCCCeEEE--EEEecccCCC--------------CccccccCCC--CCCcchhhhhhhHHHHHHHHhCC-
Confidence 677777765443444333 3332222210 1346754221 135678888855554 5899996
Q ss_pred CCceeEEE---cC----CcceeEEEEecCCcEEEecCC
Q 012004 308 YDNIEIII---HP----QSIIHSMVETQDSSVIGQLGW 338 (473)
Q Consensus 308 ~d~I~VvI---HP----QSiIHsmVef~DGSv~Aqlg~ 338 (473)
+.++.... +| .-..+.+++|.||.+....++
T Consensus 192 ~~~v~a~~~~~~~~~~~~D~~~~~l~f~~g~~~~~~s~ 229 (346)
T PRK11579 192 PVSITVDLAQLRPGAQSTDYFHAILSYPQRRVVLHGTM 229 (346)
T ss_pred CeEEEEEeeeecCCCCCCceEEEEEEECCeEEEEEEEe
Confidence 44555433 23 235688889998877655553
No 13
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=97.74 E-value=0.00021 Score=70.93 Aligned_cols=145 Identities=17% Similarity=0.169 Sum_probs=102.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
|.||+|+|+ |.||+.-++.+.++|+ ++++++.... +.+...+ .+.. .+.++
T Consensus 1 m~rVgIiG~-G~iG~~~~~~l~~~~~-~~l~~v~~~~~~~~~~~~---~~~~-----------------------~~~~~ 52 (265)
T PRK13303 1 MMKVAMIGF-GAIGAAVLELLEHDPD-LRVDWVIVPEHSIDAVRR---ALGE-----------------------AVRVV 52 (265)
T ss_pred CcEEEEECC-CHHHHHHHHHHhhCCC-ceEEEEEEcCCCHHHHhh---hhcc-----------------------CCeee
Confidence 458999999 9999999999998865 8888877322 2222111 1110 11222
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeec--cccchHHHhhcCCeEeecccchhhHH
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKILPADSEHSAIF 232 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~a--G~li~~~a~~~~~~IlPVDSEHsAIf 232 (473)
.. +.++ ..++|+||.+....+-..-...++++||.+...+...+.-. +..+.+.|+++|.+++. +|-.-...
T Consensus 53 ~d---~~~l--~~~~DvVve~t~~~~~~e~~~~aL~aGk~Vvi~s~~Al~d~~~~~~L~~~A~~~g~~l~v-~sga~gg~ 126 (265)
T PRK13303 53 SS---VDAL--PQRPDLVVECAGHAALKEHVVPILKAGIDCAVISVGALADEALRERLEQAAEAGGARLHL-LSGAIGGI 126 (265)
T ss_pred CC---HHHh--ccCCCEEEECCCHHHHHHHHHHHHHcCCCEEEeChHHhcCHHHHHHHHHHHHHCCCEEEE-eChHhhCH
Confidence 21 3344 46799999998776666778999999999999998877533 67788899999987665 77777777
Q ss_pred HhhcCCCCCccceEEEEecCCC
Q 012004 233 QCIQGLPEGALRRIILTASGGA 254 (473)
Q Consensus 233 QcL~g~~~~~v~kiiLTASGGP 254 (473)
.+|+......++.+.+|.-.-|
T Consensus 127 d~l~~~~~g~~~~v~~~~~k~p 148 (265)
T PRK13303 127 DALAAAKEGGLDEVTYTGRKPP 148 (265)
T ss_pred HHHHHHHhCCceEEEEEEecCh
Confidence 7777555567888888865555
No 14
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=97.67 E-value=0.00044 Score=69.01 Aligned_cols=143 Identities=15% Similarity=0.174 Sum_probs=98.3
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.+.||+|+|. |.||+.-.+-+.+....++|+++.. ++.+...+++.++....+ +
T Consensus 5 ~~irIGIIG~-G~IG~~~a~~L~~~~~~~el~aV~d-r~~~~a~~~a~~~g~~~~------------------------~ 58 (271)
T PRK13302 5 PELRVAIAGL-GAIGKAIAQALDRGLPGLTLSAVAV-RDPQRHADFIWGLRRPPP------------------------V 58 (271)
T ss_pred CeeEEEEECc-cHHHHHHHHHHHhcCCCeEEEEEEC-CCHHHHHHHHHhcCCCcc------------------------c
Confidence 3579999995 9999998888876434689988754 466776666666541110 1
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeE-eecccchhhHHH
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI-LPADSEHSAIFQ 233 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~I-lPVDSEHsAIfQ 233 (473)
+.+.++.. ++|+|+.+..-.+=-.-...++++||.|...+-.++.- -.-+.+.++++|.++ +| |=...-|+
T Consensus 59 ---~~~eell~--~~D~Vvi~tp~~~h~e~~~~aL~aGk~Vi~~s~gal~~-~~~L~~~A~~~g~~l~v~--sGa~~g~d 130 (271)
T PRK13302 59 ---VPLDQLAT--HADIVVEAAPASVLRAIVEPVLAAGKKAIVLSVGALLR-NEDLIDLARQNGGQIIVP--TGALLGLD 130 (271)
T ss_pred ---CCHHHHhc--CCCEEEECCCcHHHHHHHHHHHHcCCcEEEecchhHHh-HHHHHHHHHHcCCEEEEc--chHHHhHH
Confidence 11234433 47999998776655555688999999987643333321 256678899999987 56 77777788
Q ss_pred hhcCCCCCccceEEEEec
Q 012004 234 CIQGLPEGALRRIILTAS 251 (473)
Q Consensus 234 cL~g~~~~~v~kiiLTAS 251 (473)
+|+......++.+.+|.-
T Consensus 131 ~l~~g~iG~~~~v~~~tr 148 (271)
T PRK13302 131 AVTAAAEGTIHSVKMITR 148 (271)
T ss_pred HHHHHHcCCceEEEEEEe
Confidence 887655567888888875
No 15
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=97.48 E-value=0.00095 Score=70.53 Aligned_cols=218 Identities=18% Similarity=0.151 Sum_probs=137.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
|++|.|+|| |-||+.+..-+.++-| ++|.. |.++.+++.+......++.=++ -| .
T Consensus 1 m~~ilviGa-G~Vg~~va~~la~~~d-~~V~i--AdRs~~~~~~i~~~~~~~v~~~~vD--------------------~ 56 (389)
T COG1748 1 MMKILVIGA-GGVGSVVAHKLAQNGD-GEVTI--ADRSKEKCARIAELIGGKVEALQVD--------------------A 56 (389)
T ss_pred CCcEEEECC-chhHHHHHHHHHhCCC-ceEEE--EeCCHHHHHHHHhhccccceeEEec--------------------c
Confidence 579999999 9999999999999877 88875 4467777776655544322111 11 1
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc-ccccccceeeeccccchHHHhhcCCeEee---cccchhh
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD-IALANKETLIAGGPFVLPLAHKHNIKILP---ADSEHSA 230 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~-IaLANKESLV~aG~li~~~a~~~~~~IlP---VDSEHsA 230 (473)
.+.+++.++.+. .|+|+|++-++-++.-.-+|+++|.. |=++|.|--. +.+.+.|++.|+.++| +|-=-+-
T Consensus 57 ~d~~al~~li~~--~d~VIn~~p~~~~~~i~ka~i~~gv~yvDts~~~~~~---~~~~~~a~~Agit~v~~~G~dPGi~n 131 (389)
T COG1748 57 ADVDALVALIKD--FDLVINAAPPFVDLTILKACIKTGVDYVDTSYYEEPP---WKLDEEAKKAGITAVLGCGFDPGITN 131 (389)
T ss_pred cChHHHHHHHhc--CCEEEEeCCchhhHHHHHHHHHhCCCEEEcccCCchh---hhhhHHHHHcCeEEEcccCcCcchHH
Confidence 244667777764 59999999999999999999999988 6688888772 6677889999988876 2222221
Q ss_pred HHHhhc-CCCCCccceEEEEecCCCCCC-CChhhhhcCCHHH---HhcCC--CCCCCcccccchhhhhhhhHHHHHHhhh
Q 012004 231 IFQCIQ-GLPEGALRRIILTASGGAFRD-WPVEKLKEVKVAD---ALKHP--NWSMGKKITVDSATLFNKGLEVIEAHYL 303 (473)
Q Consensus 231 IfQcL~-g~~~~~v~kiiLTASGGPFr~-~~~e~L~~vT~~~---ALkHP--nW~MG~KITIDSATmmNKgLEvIEA~~L 303 (473)
+|---. .+-.++|+.|-+=-=|+|=+. -|+.-=-+-.++. .+.-| -|.-|+-++||+ ||..| -+-
T Consensus 132 v~a~~a~~~~~~~i~si~iy~g~~g~~~~~~l~ya~tws~e~~l~e~~~p~~~~~~Gk~~~v~~-------~~~~~-~~~ 203 (389)
T COG1748 132 VLAAYAAKELFDEIESIDIYVGGLGEHGDNPLGYATTWSPEINLREYTRPARYWENGKWVEVDP-------LEERE-VFE 203 (389)
T ss_pred HHHHHHHHHhhccccEEEEEEecCCCCCCCCccceeeecHHHhHHHhcCceEEEeCCEEEEecC-------ccccc-ccc
Confidence 111110 011125777766666666554 1111111112222 23334 377888888876 55556 222
Q ss_pred cCCCCCceeEEEcCCcceeEEEEecCCc
Q 012004 304 FGAEYDNIEIIIHPQSIIHSMVETQDSS 331 (473)
Q Consensus 304 F~i~~d~I~VvIHPQSiIHsmVef~DGS 331 (473)
|.. +..=++---|..=.|+++++.+|-
T Consensus 204 ~~~-~G~~~~y~~~~~el~sL~~~i~~~ 230 (389)
T COG1748 204 FPV-IGYGDVYAFYHDELRSLVKTIPGV 230 (389)
T ss_pred cCC-CCceeEEecCCccHHHHHHhCccc
Confidence 222 233344444444568999998865
No 16
>PRK08374 homoserine dehydrogenase; Provisional
Probab=97.48 E-value=0.00068 Score=69.75 Aligned_cols=122 Identities=20% Similarity=0.251 Sum_probs=86.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCC--------CceEEEEEeccC---------CHHHHHHHHHhhCCCEEEEeCcccHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGS---------NITLLADQVKRFKPQVVAVRNESLLD 138 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~p--------d~f~VvaLaa~~---------Nv~~L~~q~~~f~P~~v~v~de~~~~ 138 (473)
+-+|+|+| .|.||+.+++++.++. -+++|++++-.+ +++.+.+..+++..-
T Consensus 2 ~i~VaIiG-~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l~~~~~~~~~~----------- 69 (336)
T PRK08374 2 EVKVSIFG-FGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREAKEVKENFGKL----------- 69 (336)
T ss_pred eeEEEEEC-CCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHHHHhhhccCch-----------
Confidence 35899999 7999999999998743 358899987432 222222222222110
Q ss_pred HHHHHHhcCCCCcEEEe---c--hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHH
Q 012004 139 EIKEALANVEEKPEILA---G--EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPL 213 (473)
Q Consensus 139 ~l~~~l~~~~~~~~v~~---G--~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~ 213 (473)
.-+. + .-...++....++|+||+.+.+-..-.-...++++||.|-.|||..|-.-++-+.++
T Consensus 70 -------------~~~~~~~~~~~~~~~ell~~~~~DVvVd~t~~~~a~~~~~~al~~G~~VVtanK~~la~~~~el~~l 136 (336)
T PRK08374 70 -------------SNWGNDYEVYNFSPEEIVEEIDADIVVDVTNDKNAHEWHLEALKEGKSVVTSNKPPIAFHYDELLDL 136 (336)
T ss_pred -------------hhccccccccCCCHHHHHhcCCCCEEEECCCcHHHHHHHHHHHhhCCcEEECCHHHHHhCHHHHHHH
Confidence 0000 0 013446665567999999997766666677899999999999999888888899999
Q ss_pred HhhcCCeEe
Q 012004 214 AHKHNIKIL 222 (473)
Q Consensus 214 a~~~~~~Il 222 (473)
|+++|++++
T Consensus 137 a~~~~~~~~ 145 (336)
T PRK08374 137 ANERNLPYL 145 (336)
T ss_pred HHHcCCeEE
Confidence 999998876
No 17
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=97.44 E-value=0.0015 Score=55.55 Aligned_cols=90 Identities=20% Similarity=0.313 Sum_probs=71.3
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEech
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (473)
||+|+|. |++|+.-+.-+.+.+++++|+|+.. .+-+...+.+++|+-+ ...|
T Consensus 2 ~v~iiG~-G~~g~~~~~~~~~~~~~~~v~~v~d-~~~~~~~~~~~~~~~~--~~~~------------------------ 53 (120)
T PF01408_consen 2 RVGIIGA-GSIGRRHLRALLRSSPDFEVVAVCD-PDPERAEAFAEKYGIP--VYTD------------------------ 53 (120)
T ss_dssp EEEEEST-SHHHHHHHHHHHHTTTTEEEEEEEC-SSHHHHHHHHHHTTSE--EESS------------------------
T ss_pred EEEEECC-cHHHHHHHHHHHhcCCCcEEEEEEe-CCHHHHHHHHHHhccc--chhH------------------------
Confidence 7999998 9999999999999888999999864 4667766666666644 2111
Q ss_pred hhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccc
Q 012004 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (473)
Q Consensus 158 egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaL 197 (473)
+.++.+.+++|.|+.+...-.-...+..++++||.|.+
T Consensus 54 --~~~ll~~~~~D~V~I~tp~~~h~~~~~~~l~~g~~v~~ 91 (120)
T PF01408_consen 54 --LEELLADEDVDAVIIATPPSSHAEIAKKALEAGKHVLV 91 (120)
T ss_dssp --HHHHHHHTTESEEEEESSGGGHHHHHHHHHHTTSEEEE
T ss_pred --HHHHHHhhcCCEEEEecCCcchHHHHHHHHHcCCEEEE
Confidence 34555556899999999999999999999999997654
No 18
>PRK06392 homoserine dehydrogenase; Provisional
Probab=97.40 E-value=0.001 Score=68.53 Aligned_cols=202 Identities=19% Similarity=0.175 Sum_probs=116.2
Q ss_pred eEEEEccCChHhHHHHHHHHhC------CCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCc
Q 012004 78 PISVLGSTGSIGTQTLDIVAEH------EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~------pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~ 151 (473)
||+|+| -|.||+.+++++++. ...++|++++..+- .. ++|+-+ +.+++.+.... + ..
T Consensus 2 rVaIiG-fG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g-~l-------~~~~Gl------dl~~l~~~~~~-g-~l 64 (326)
T PRK06392 2 RISIIG-LGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKL-SY-------YNERGL------DIGKIISYKEK-G-RL 64 (326)
T ss_pred EEEEEC-CCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCC-cc-------cCCcCC------ChHHHHHHHhc-C-cc
Confidence 799999 699999999999874 35789999975431 11 111111 01111111110 0 00
Q ss_pred EEEechh--hHHHhhcCCCCCEEEEecccc----cCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEe---
Q 012004 152 EILAGEQ--GVIEAARHPDAVTVVTGIVGC----AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL--- 222 (473)
Q Consensus 152 ~v~~G~e--gl~~la~~~~~D~Vv~AIvG~----aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~Il--- 222 (473)
.. .+.+ .+.++.. .++|+||.+..+. .++.-...|+++||.|..|||-.|...++-++++|+++|+++.
T Consensus 65 ~~-~~~~~~~~~~ll~-~~~DVvVE~t~~~~~g~~~~~~~~~aL~~G~hVVTaNKgalA~~~~eL~~lA~~~g~~~~~ea 142 (326)
T PRK06392 65 EE-IDYEKIKFDEIFE-IKPDVIVDVTPASKDGIREKNLYINAFEHGIDVVTANKSGLANHWHDIMDSASKNRRIIRYEA 142 (326)
T ss_pred cc-CCCCcCCHHHHhc-CCCCEEEECCCCCCcCchHHHHHHHHHHCCCEEEcCCHHHHHhhHHHHHHHHHHcCCeEEEee
Confidence 00 0111 2344443 5799999998642 2455568999999999999999999889999999999998875
Q ss_pred ------ecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhh-hcCCHHHHhcCCCCCCC-----cccccchhhh
Q 012004 223 ------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL-KEVKVADALKHPNWSMG-----KKITVDSATL 290 (473)
Q Consensus 223 ------PVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L-~~vT~~~ALkHPnW~MG-----~KITIDSATm 290 (473)
||=+ .+-.+|.|. +|.+|-=-=||= -++=+.+| +..+.++||+.- ..+| +.--||-=-.
T Consensus 143 tV~~g~Pii~---~~~~~~~g~---~i~~i~GilnGT--~nyIl~~m~~g~~f~~al~eA-q~lG~aE~DP~~Dv~G~D~ 213 (326)
T PRK06392 143 TVAGGVPLFS---LRDYSTLPS---RIKNFRGIVSST--INYVIRQEANGRGFLDVVKIA-QKMGIAETNYSDDLMGLDA 213 (326)
T ss_pred eeeeccchhh---hhhhhcccC---CEEEEEEEEeCh--HHHHHhhccCCCCHHHHHHHH-HHcCCCCCCCccccCCHHH
Confidence 5532 332334453 355542111221 01113333 577777877631 2222 1122322233
Q ss_pred hhhhHHHHHHhhhcCCCCC
Q 012004 291 FNKGLEVIEAHYLFGAEYD 309 (473)
Q Consensus 291 mNKgLEvIEA~~LF~i~~d 309 (473)
..|. +|=|+.+||.+.+
T Consensus 214 a~Kl--~ILa~~~~g~~~~ 230 (326)
T PRK06392 214 ARKS--VILANHLFGKDYT 230 (326)
T ss_pred HHHH--HHHHHHHcCCCCC
Confidence 4455 6778888877643
No 19
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=97.37 E-value=0.0029 Score=62.76 Aligned_cols=145 Identities=18% Similarity=0.149 Sum_probs=94.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.||+|+|. |.||+.-..-+.+.+..++++++. .++.+...+.++++... ++
T Consensus 2 mrIgIIG~-G~iG~~ia~~l~~~~~~~elv~v~-d~~~~~a~~~a~~~~~~-------------------------~~-- 52 (265)
T PRK13304 2 LKIGIVGC-GAIASLITKAILSGRINAELYAFY-DRNLEKAENLASKTGAK-------------------------AC-- 52 (265)
T ss_pred CEEEEECc-cHHHHHHHHHHHcCCCCeEEEEEE-CCCHHHHHHHHHhcCCe-------------------------eE--
Confidence 48999995 999999888887754368988876 45666655544444321 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeee--ccccchHHHhhcCCeEeecccchhhHHHh
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA--GGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~--aG~li~~~a~~~~~~IlPVDSEHsAIfQc 234 (473)
+.+.++. .++|+|+.+..--+-..-+..++++||.+....-..|+- -..-+.++|+++|.++.. +|---...+.
T Consensus 53 -~~~~ell--~~~DvVvi~a~~~~~~~~~~~al~~Gk~Vvv~s~gAl~d~~~~~~L~~aA~~~g~~l~v-~sga~~g~d~ 128 (265)
T PRK13304 53 -LSIDELV--EDVDLVVECASVNAVEEVVPKSLENGKDVIIMSVGALADKELFLKLYKLAKENNCKIYL-PSGAIVGLDG 128 (265)
T ss_pred -CCHHHHh--cCCCEEEEcCChHHHHHHHHHHHHcCCCEEEEchHHhcCHHHHHHHHHHHHHcCCEEEE-eCchHHhHHH
Confidence 1234444 469999998755555555677899999886522111111 124567789999988775 5533343588
Q ss_pred hcCCCCCccceEEEEecCCC
Q 012004 235 IQGLPEGALRRIILTASGGA 254 (473)
Q Consensus 235 L~g~~~~~v~kiiLTASGGP 254 (473)
|+......++.+.+|..--|
T Consensus 129 i~a~~~G~i~~V~~~~~k~p 148 (265)
T PRK13304 129 IKAASLGEIKSVTLTTRKPP 148 (265)
T ss_pred HHHHhcCCccEEEEEEecCh
Confidence 87555567888888876555
No 20
>PRK06813 homoserine dehydrogenase; Validated
Probab=97.30 E-value=0.00038 Score=72.30 Aligned_cols=199 Identities=18% Similarity=0.217 Sum_probs=112.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCC--------CceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHE--------DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~p--------d~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
-+|+|+| .|.||+..++++.++. -+++|++++. ++..+..+- -+.++. .+........+.+.+
T Consensus 3 i~I~liG-~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~-~~~~~~~~~--gi~~~~-~l~~~~~~~~~~~~~---- 73 (346)
T PRK06813 3 IKVVLSG-YGTVGREFIKLLNEKYLYINETYGIDLVVSGVLG-RNVAIHNED--GLSIHH-LLRYGGGSCAIEKYI---- 73 (346)
T ss_pred eEEEEEe-cChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEe-cchhhcccc--CCChhh-hhhccccccchhhhh----
Confidence 4899999 8999999999997654 3578888864 333322200 010000 000000000000000
Q ss_pred CCcEEEechhhHHHhh-cCCCCCEEEEec----cc-ccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEe
Q 012004 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGI----VG-CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (473)
Q Consensus 149 ~~~~v~~G~egl~~la-~~~~~D~Vv~AI----vG-~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~Il 222 (473)
.. -..+.. ...+.|+||... .| -.+.....+|+++||.|--|||.-+-.-|+-++++|+++|+.++
T Consensus 74 ------~~--~~~~~~~~~~~~dVvVe~T~s~~~~~e~a~~~~~~aL~~G~hVVTANK~~la~~~~eL~~lA~~~g~~~~ 145 (346)
T PRK06813 74 ------EH--HPEERATDNISGTVLVESTVTNLKDGNPGKQYIKQAIEKKMDIVAISKGALVTNWREINEAAKIANVRIR 145 (346)
T ss_pred ------cc--ChHHHhcCCCCCCEEEECCCCccCCchHHHHHHHHHHHCCCeEEcCCcHHHhccHHHHHHHHHHcCCeEE
Confidence 00 001112 223689999994 22 44566668999999999999999999999999999999998875
Q ss_pred ---------ecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhh--hcCCHHHHhc----------CCCCCCCc
Q 012004 223 ---------PADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKL--KEVKVADALK----------HPNWSMGK 281 (473)
Q Consensus 223 ---------PVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L--~~vT~~~ALk----------HPnW~MG~ 281 (473)
|| -+.+-.++.| ++|.+|.=-=||= -++=+.+| +..+.++||+ .|+=
T Consensus 146 yEasVggGiPi---I~~l~~~~~g---~~I~~i~GIlNGT--~NyIL~~m~~~g~~f~eal~~Aq~lGyaE~DP~~---- 213 (346)
T PRK06813 146 YSGATAAALPT---LDIGQFSLAG---CHIEKIEGILNGT--TNYILTKMNEEDITFEEALKEAQSKGIAETNPIL---- 213 (346)
T ss_pred Eeeeeeeccch---HHHHhhhccc---CcEEEEEEEEech--HHHHHhhhhhcCCCHHHHHHHHHHcCCCCCCCcc----
Confidence 54 1223233444 3455553211221 11225555 3677777775 4532
Q ss_pred ccccchhhhhhhhHHHHHHhhhcCCCC
Q 012004 282 KITVDSATLFNKGLEVIEAHYLFGAEY 308 (473)
Q Consensus 282 KITIDSATmmNKgLEvIEA~~LF~i~~ 308 (473)
-||---...|. +|=|...||.+.
T Consensus 214 --Dl~G~D~A~Kl--~ILA~~~~G~~i 236 (346)
T PRK06813 214 --DVSGSDSACKL--LLLTNSLMGTEN 236 (346)
T ss_pred --ccccHHHHHHH--HHHHHHHcCCCC
Confidence 22222233444 566777777654
No 21
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.20 E-value=0.0098 Score=69.76 Aligned_cols=192 Identities=17% Similarity=0.210 Sum_probs=121.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceE------------EEEEeccCCHHHHHHHHHhh-CCCEEEEeCcccHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFR------------VVALAAGSNITLLADQVKRF-KPQVVAVRNESLLDEIK 141 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~------------VvaLaa~~Nv~~L~~q~~~f-~P~~v~v~de~~~~~l~ 141 (473)
.+|||+|+|| |.||....+.+.++|+ ++ ++++ +-.|.+.+.+.++.+ +.+.+.+ |
T Consensus 568 ~~~rIlVLGA-G~VG~~~a~~La~~~~-~~~~~~~~~~~~~~lV~V-aD~~~~~a~~la~~~~~~~~v~l-D-------- 635 (1042)
T PLN02819 568 KSQNVLILGA-GRVCRPAAEYLASVKT-ISYYGDDSEEPTDVHVIV-ASLYLKDAKETVEGIENAEAVQL-D-------- 635 (1042)
T ss_pred cCCcEEEECC-CHHHHHHHHHHHhCcC-ccccccccccccccEEEE-ECCCHHHHHHHHHhcCCCceEEe-e--------
Confidence 4789999998 9999999999998876 22 2333 344555555555544 2122222 1
Q ss_pred HHHhcCCCCcEEEechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeE
Q 012004 142 EALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (473)
Q Consensus 142 ~~l~~~~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~I 221 (473)
+.-.+.+.++.+ ++|+||+++-......-..+|+++||.+.-+. ..+..-.-+.+.|++.|+.+
T Consensus 636 ------------v~D~e~L~~~v~--~~DaVIsalP~~~H~~VAkaAieaGkHvv~ek--y~~~e~~~L~e~Ak~AGV~~ 699 (1042)
T PLN02819 636 ------------VSDSESLLKYVS--QVDVVISLLPASCHAVVAKACIELKKHLVTAS--YVSEEMSALDSKAKEAGITI 699 (1042)
T ss_pred ------------cCCHHHHHHhhc--CCCEEEECCCchhhHHHHHHHHHcCCCEEECc--CCHHHHHHHHHHHHHcCCEE
Confidence 122234444433 49999999999999999999999999997774 34455566778999999999
Q ss_pred ee---cccchhh--HHHhhcCC--CCCccceEEEEecCCC---CCCCChhhhhcCCHHHHh---cCC--CCCCCcccccc
Q 012004 222 LP---ADSEHSA--IFQCIQGL--PEGALRRIILTASGGA---FRDWPVEKLKEVKVADAL---KHP--NWSMGKKITVD 286 (473)
Q Consensus 222 lP---VDSEHsA--IfQcL~g~--~~~~v~kiiLTASGGP---Fr~~~~e~L~~vT~~~AL---kHP--nW~MG~KITID 286 (473)
+| .|.-... .-+++... ....|..+....=|=| +-+=++.---+-+|+.+| ..| -|.-|+.++||
T Consensus 700 m~e~GlDPGid~~lA~~~Id~~~~~~GkI~s~~s~~GGLP~pe~~~npL~YkfsWSp~gvi~~~~npa~~i~~G~~~~V~ 779 (1042)
T PLN02819 700 LCEMGLDPGIDHMMAMKMIDDAHERGGKVKSFTSYCGGLPSPEAANNPLAYKFSWNPAGAIKAGQNPAVYKSNGQIIHVD 779 (1042)
T ss_pred EECCccCHHHHHHHHHHHHHhhcccCCcEEEEEEEEcCccCcccCCCcccccccCCHHHHHHHhcCcceeeECCEEEEec
Confidence 88 4554444 44555432 2245666666555545 222222222233333333 233 37789999999
Q ss_pred hhhhhhhh
Q 012004 287 SATLFNKG 294 (473)
Q Consensus 287 SATmmNKg 294 (473)
...||...
T Consensus 780 ~~~l~~~~ 787 (1042)
T PLN02819 780 GENLFASA 787 (1042)
T ss_pred chhhhhhc
Confidence 98776654
No 22
>TIGR03215 ac_ald_DH_ac acetaldehyde dehydrogenase (acetylating). Members of this protein family are acetaldehyde dehydrogenase (acetylating), EC 1.2.1.10. This enzyme oxidizes acetaldehyde, using NAD(+), and attaches coenzyme A (CoA), yielding acetyl-CoA. It occurs as a late step in the meta-cleavage pathways of a variety of compounds, including catechol, biphenyl, toluene, salicylate, etc.
Probab=97.06 E-value=0.008 Score=61.10 Aligned_cols=89 Identities=19% Similarity=0.225 Sum_probs=61.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH-HHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL-LADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~-L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
-||+|+|+ |.||+.-+.-+.+. +++++++++... -+. -.+.++++.-. ....
T Consensus 2 lrVAIIG~-G~IG~~h~~~ll~~-~~~elvaV~d~d-~es~~la~A~~~Gi~------------------------~~~~ 54 (285)
T TIGR03215 2 VKVAIIGS-GNIGTDLMYKLLRS-EHLEMVAMVGID-PESDGLARARELGVK------------------------TSAE 54 (285)
T ss_pred cEEEEEeC-cHHHHHHHHHHHhC-CCcEEEEEEeCC-cccHHHHHHHHCCCC------------------------EEEC
Confidence 37999996 99999886655554 469999987642 221 11234444311 1122
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
| ..++..++++|+|+.+.....-..-..+|+++||.|
T Consensus 55 ~---~e~ll~~~dIDaV~iaTp~~~H~e~a~~al~aGk~V 91 (285)
T TIGR03215 55 G---VDGLLANPDIDIVFDATSAKAHARHARLLAELGKIV 91 (285)
T ss_pred C---HHHHhcCCCCCEEEECCCcHHHHHHHHHHHHcCCEE
Confidence 3 334445678999999999999999999999999988
No 23
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=96.98 E-value=0.0056 Score=60.75 Aligned_cols=211 Identities=17% Similarity=0.217 Sum_probs=141.4
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.+.||+|+|+.|..++.-+..+++.++.++++|+. .+|-+++.+.+++|+...+ +
T Consensus 2 ~~irvgiiG~G~~~~~~~~~~~~~~~~~~~~vav~-d~~~~~a~~~a~~~~~~~~-------~----------------- 56 (342)
T COG0673 2 KMIRVGIIGAGGIAGKAHLPALAALGGGLELVAVV-DRDPERAEAFAEEFGIAKA-------Y----------------- 56 (342)
T ss_pred CeeEEEEEcccHHHHHHhHHHHHhCCCceEEEEEe-cCCHHHHHHHHHHcCCCcc-------c-----------------
Confidence 46799999999888888999999887668888865 5688999999999986511 1
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccc------cccceeeeccccchHHHhhcCCeEee-----
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL------ANKETLIAGGPFVLPLAHKHNIKILP----- 223 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaL------ANKESLV~aG~li~~~a~~~~~~IlP----- 223 (473)
+.+.++.+.+++|.|+.+..=..=...+++|+++||-|.. -=.| ..-+.++|+++|..+.-
T Consensus 57 ---~~~~~ll~~~~iD~V~Iatp~~~H~e~~~~AL~aGkhVl~EKPla~t~~e-----a~~l~~~a~~~~~~l~v~~~~R 128 (342)
T COG0673 57 ---TDLEELLADPDIDAVYIATPNALHAELALAALEAGKHVLCEKPLALTLEE-----AEELVELARKAGVKLMVGFNRR 128 (342)
T ss_pred ---CCHHHHhcCCCCCEEEEcCCChhhHHHHHHHHhcCCEEEEcCCCCCCHHH-----HHHHHHHHHHcCCceeeehhhh
Confidence 2234555667799999999998889999999999986642 2222 23466788888755432
Q ss_pred cccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-Hhh
Q 012004 224 ADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHY 302 (473)
Q Consensus 224 VDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~ 302 (473)
=|.-+.++-++|....-.+|..+-.+.+..... .-..+.|.+..+-.= +.++..|.-.|- ++|
T Consensus 129 f~p~~~~~k~li~~g~lG~v~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~g--G~l~d~giH~lD~~~~ 192 (342)
T COG0673 129 FDPAVQALKELIDSGALGEVVSVQASFSRDRPN--------------PPPPPWWRFDRADGG--GALLDLGIHDLDLLRF 192 (342)
T ss_pred cCHHHHHHHHHHhcCCcCceEEEEEEeeccccc--------------cCCccceecccccCC--CchhhhHHHHHHHHHH
Confidence 245555555666554445566655554443221 122345554443222 467777776664 689
Q ss_pred hcCC-CCCceeEEEcCC--------cceeEEEEecCCcEEE
Q 012004 303 LFGA-EYDNIEIIIHPQ--------SIIHSMVETQDSSVIG 334 (473)
Q Consensus 303 LF~i-~~d~I~VvIHPQ--------SiIHsmVef~DGSv~A 334 (473)
|||- ++....+..+.+ -..+.+.+|.||.+-.
T Consensus 193 l~G~~~~~~v~a~~~~~~~~~~~~~d~~~~~l~~~~g~~~~ 233 (342)
T COG0673 193 LLGSPEPVSVSAKARNSPPGEAGVDDSASAILRFENGVLAV 233 (342)
T ss_pred HcCCcchhheeeecccCCCCcccccceEEEEEEecCCceEE
Confidence 9998 577777777643 3467777777754443
No 24
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=96.96 E-value=0.0092 Score=61.36 Aligned_cols=146 Identities=19% Similarity=0.181 Sum_probs=85.2
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh-CCCEEEE-eCcccHHHHHHHHhcCCCCcEEEec
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAV-RNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f-~P~~v~v-~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
|.|||+ |.+|+.+++.+.++++..+|+ .+++|.+++.+.+.++ ..+.-.+ .|-. .
T Consensus 1 IlvlG~-G~vG~~~~~~L~~~~~~~~v~--va~r~~~~~~~~~~~~~~~~~~~~~~d~~--------------------~ 57 (386)
T PF03435_consen 1 ILVLGA-GRVGSAIARLLARRGPFEEVT--VADRNPEKAERLAEKLLGDRVEAVQVDVN--------------------D 57 (386)
T ss_dssp EEEE---SHHHHHHHHHHHCTTCE-EEE--EEESSHHHHHHHHT--TTTTEEEEE--TT--------------------T
T ss_pred CEEEcC-cHHHHHHHHHHhcCCCCCcEE--EEECCHHHHHHHHhhccccceeEEEEecC--------------------C
Confidence 789999 999999999999986533433 4578999998888764 2333222 1222 2
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccce-eeeccccchHHHhhcCCeEee---ccc---chh
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET-LIAGGPFVLPLAHKHNIKILP---ADS---EHS 229 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKES-LV~aG~li~~~a~~~~~~IlP---VDS---EHs 229 (473)
.+.|.++++ +.|+|||+.-.+.+..-..+|+++|....= -+ +...=.-+-+.+++.|+.+++ .|+ .+-
T Consensus 58 ~~~l~~~~~--~~dvVin~~gp~~~~~v~~~~i~~g~~yvD---~~~~~~~~~~l~~~a~~~g~~~l~~~G~~PGl~~~~ 132 (386)
T PF03435_consen 58 PESLAELLR--GCDVVINCAGPFFGEPVARACIEAGVHYVD---TSYVTEEMLALDEEAKEAGVTALPGCGFDPGLSNLL 132 (386)
T ss_dssp HHHHHHHHT--TSSEEEE-SSGGGHHHHHHHHHHHT-EEEE---SS-HHHHHHHCHHHHHHTTSEEE-S-BTTTBHHHHH
T ss_pred HHHHHHHHh--cCCEEEECCccchhHHHHHHHHHhCCCeec---cchhHHHHHHHHHHHHhhCCEEEeCcccccchHHHH
Confidence 344556654 469999999888888889999999987543 00 111112335677788888775 232 222
Q ss_pred hHH--HhhcCCCCCccceEEEEecCC
Q 012004 230 AIF--QCIQGLPEGALRRIILTASGG 253 (473)
Q Consensus 230 AIf--QcL~g~~~~~v~kiiLTASGG 253 (473)
|-+ |.|.+ ....++.+.+...|-
T Consensus 133 a~~~~~~~~~-~~~~v~~~~~~~g~~ 157 (386)
T PF03435_consen 133 ARYAADELDA-EGDEVESVDIYVGGL 157 (386)
T ss_dssp HHHHHHHHHH-TTHEEEEEEEEEEEE
T ss_pred HHHHHHHhhh-hcccceEEEEEEccc
Confidence 211 22221 223577777665554
No 25
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.78 E-value=0.0024 Score=55.75 Aligned_cols=35 Identities=40% Similarity=0.768 Sum_probs=32.6
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (473)
||+|+|+||.+|+..++.+.+||+ |+++.+.++++
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~-~e~~~~~~~~~ 35 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPD-FELVALVSSSR 35 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTST-EEEEEEEESTT
T ss_pred CEEEECCCCHHHHHHHHHHhcCCC-ccEEEeeeecc
Confidence 799999999999999999999865 99999998887
No 26
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=96.76 E-value=0.013 Score=60.28 Aligned_cols=163 Identities=15% Similarity=0.222 Sum_probs=96.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHH-HHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT-LLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~-~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
+.||+|+| ||.||+.-+.-+.+. +.+++++++.. |.+ ...+.++++.-.. .+
T Consensus 4 klrVAIIG-tG~IGt~hm~~l~~~-~~velvAVvdi-d~es~gla~A~~~Gi~~------------------------~~ 56 (302)
T PRK08300 4 KLKVAIIG-SGNIGTDLMIKILRS-EHLEPGAMVGI-DPESDGLARARRLGVAT------------------------SA 56 (302)
T ss_pred CCeEEEEc-CcHHHHHHHHHHhcC-CCcEEEEEEeC-ChhhHHHHHHHHcCCCc------------------------cc
Confidence 34899999 999999877666664 57999998765 333 2224466654211 11
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHH------hhcCCeEeec-ccc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLA------HKHNIKILPA-DSE 227 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a------~~~~~~IlPV-DSE 227 (473)
.|-+.+.+....+++|+|+.+.....=..-...++++||.|. =||=.. -|+++.+.. ...+.+|+-. ..-
T Consensus 57 ~~ie~LL~~~~~~dIDiVf~AT~a~~H~e~a~~a~eaGk~VI-D~sPA~--~~PlvVP~VN~~~~~~~~~~~iia~p~~a 133 (302)
T PRK08300 57 EGIDGLLAMPEFDDIDIVFDATSAGAHVRHAAKLREAGIRAI-DLTPAA--IGPYCVPAVNLDEHLDAPNVNMVTCGGQA 133 (302)
T ss_pred CCHHHHHhCcCCCCCCEEEECCCHHHHHHHHHHHHHcCCeEE-ECCccc--cCCcccCcCCHHHHhcccCCCEEECccHH
Confidence 233333331112689999999998888888999999998753 343333 446654422 1122222211 112
Q ss_pred hhhHHHhhcCCCCCccceEEEE---ecCCCCCCCChhhhhcCCH
Q 012004 228 HSAIFQCIQGLPEGALRRIILT---ASGGAFRDWPVEKLKEVKV 268 (473)
Q Consensus 228 HsAIfQcL~g~~~~~v~kiiLT---ASGGPFr~~~~e~L~~vT~ 268 (473)
-..+...|.--...+..+|+-| .|=||.+.--.|||..-|-
T Consensus 134 ti~~v~Al~~v~~~~~~eIvat~~s~s~g~gtr~nidE~~~~t~ 177 (302)
T PRK08300 134 TIPIVAAVSRVAPVHYAEIVASIASKSAGPGTRANIDEFTETTS 177 (302)
T ss_pred HHHHHHHhcccCcCceeeeeeeehhhccCCcccccHHHHHHHHH
Confidence 2223333332233356777732 4669998888899877654
No 27
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.73 E-value=0.011 Score=53.24 Aligned_cols=37 Identities=27% Similarity=0.350 Sum_probs=30.4
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
|+|+|+||.||+..+.-+.+.+ ++|.+++ +|-+.+.+
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~--~~V~~~~--R~~~~~~~ 37 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG--HEVTALV--RSPSKAED 37 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT--SEEEEEE--SSGGGHHH
T ss_pred eEEECCCChHHHHHHHHHHHCC--CEEEEEe--cCchhccc
Confidence 7899999999999999998874 9999998 44444443
No 28
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=96.68 E-value=0.0085 Score=62.30 Aligned_cols=127 Identities=18% Similarity=0.186 Sum_probs=89.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
+.||+|+|+ |+ |..=++.+++.|++++++|+.. ++.+...+.+++|+-.. +
T Consensus 3 ~~rVgViG~-~~-G~~h~~al~~~~~~~eLvaV~d-~~~erA~~~A~~~gi~~--------y------------------ 53 (343)
T TIGR01761 3 VQSVVVCGT-RF-GQFYLAAFAAAPERFELAGILA-QGSERSRALAHRLGVPL--------Y------------------ 53 (343)
T ss_pred CcEEEEEeH-HH-HHHHHHHHHhCCCCcEEEEEEc-CCHHHHHHHHHHhCCCc--------c------------------
Confidence 468999999 75 9999999999988899999886 46788888888886321 1
Q ss_pred chhhHHHhhcCCCCCEEEE--ecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHH
Q 012004 156 GEQGVIEAARHPDAVTVVT--GIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQ 233 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~--AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQ 233 (473)
..+.++....++|.|+. +..+..+-.-+.+|+++||.|.. =|=.-+.-+.-+.++|+++|..+. | ..++--++
T Consensus 54 --~~~eell~d~Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~-EKPla~~Ea~el~~~A~~~g~~l~-v-~~f~p~~~ 128 (343)
T TIGR01761 54 --CEVEELPDDIDIACVVVRSAIVGGQGSALARALLARGIHVLQ-EHPLHPRDIQDLLRLAERQGRRYL-V-NTFYPHLP 128 (343)
T ss_pred --CCHHHHhcCCCEEEEEeCCCCCCccHHHHHHHHHhCCCeEEE-cCCCCHHHHHHHHHHHHHcCCEEE-E-EecCHHHH
Confidence 11234444556666666 33477888999999999988752 111112345667889999998776 4 34555555
Q ss_pred hhc
Q 012004 234 CIQ 236 (473)
Q Consensus 234 cL~ 236 (473)
.++
T Consensus 129 ~vr 131 (343)
T TIGR01761 129 AVR 131 (343)
T ss_pred HHH
Confidence 554
No 29
>PRK00436 argC N-acetyl-gamma-glutamyl-phosphate reductase; Validated
Probab=96.67 E-value=0.0037 Score=64.38 Aligned_cols=94 Identities=15% Similarity=0.226 Sum_probs=58.7
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
+|+||+|+|+||.+|...++.+.++| .+++++++.++...+ ...+..|....+.+ ..+
T Consensus 1 ~m~kVaIiGAtG~vG~~l~~~L~~~p-~~elv~v~~~~~~g~---~l~~~~~~~~~~~~-----------------~~~- 58 (343)
T PRK00436 1 MMIKVGIVGASGYTGGELLRLLLNHP-EVEIVAVTSRSSAGK---PLSDVHPHLRGLVD-----------------LVL- 58 (343)
T ss_pred CCeEEEEECCCCHHHHHHHHHHHcCC-CceEEEEECccccCc---chHHhCcccccccC-----------------cee-
Confidence 35799999999999999999999986 489999887543221 11111121110000 001
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
...+ +.. ..++|+|+.+...-.-.....+++++|+.
T Consensus 59 ~~~~---~~~-~~~vD~Vf~alP~~~~~~~v~~a~~aG~~ 94 (343)
T PRK00436 59 EPLD---PEI-LAGADVVFLALPHGVSMDLAPQLLEAGVK 94 (343)
T ss_pred ecCC---HHH-hcCCCEEEECCCcHHHHHHHHHHHhCCCE
Confidence 0111 111 24589999988887777777777788874
No 30
>PRK10206 putative oxidoreductase; Provisional
Probab=96.57 E-value=0.14 Score=52.62 Aligned_cols=205 Identities=18% Similarity=0.248 Sum_probs=121.4
Q ss_pred eeEEEEccCChHhHH-HHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~q-tLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
-||+|+|. |.|+.. -+..+.+.+++++|+|+.-. |-+. .+.+.+|.- +.++
T Consensus 2 irvgiiG~-G~~~~~~h~~~~~~~~~~~~l~av~d~-~~~~-~~~~~~~~~------------------------~~~~- 53 (344)
T PRK10206 2 INCAFIGF-GKSTTRYHLPYVLNRKDSWHVAHIFRR-HAKP-EEQAPIYSH------------------------IHFT- 53 (344)
T ss_pred eEEEEECC-CHHHhheehhhHhcCCCCEEEEEEEcC-ChhH-HHHHHhcCC------------------------Cccc-
Confidence 48999997 666653 46766666778999998765 3333 244444431 0011
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccccccccee--eeccccchHHHhhcCCeEeec-----ccch
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL--IAGGPFVLPLAHKHNIKILPA-----DSEH 228 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESL--V~aG~li~~~a~~~~~~IlPV-----DSEH 228 (473)
+.+.++.+.+++|.|+.+..=..=..-+.+|+++||.|.+ -|=-- +.-..-+.++++++|..+..- +..+
T Consensus 54 --~~~~ell~~~~iD~V~I~tp~~~H~~~~~~al~aGkhVl~-EKPla~~~~ea~~l~~~a~~~~~~l~v~~~~R~~p~~ 130 (344)
T PRK10206 54 --SDLDEVLNDPDVKLVVVCTHADSHFEYAKRALEAGKNVLV-EKPFTPTLAEAKELFALAKSKGLTVTPYQNRRFDSCF 130 (344)
T ss_pred --CCHHHHhcCCCCCEEEEeCCchHHHHHHHHHHHcCCcEEE-ecCCcCCHHHHHHHHHHHHHhCCEEEEEEeeeECHHH
Confidence 2245566677899999998777778889999999998865 33322 223466778899999876542 3445
Q ss_pred hhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCcccccchhhhhhhhHHHHH-HhhhcCCC
Q 012004 229 SAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKITVDSATLFNKGLEVIE-AHYLFGAE 307 (473)
Q Consensus 229 sAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KITIDSATmmNKgLEvIE-A~~LF~i~ 307 (473)
..+-++|+...-.+|..+ ++.=+.||..+. ..|.+ -+.+.|++-|--.|- +.|||| +
T Consensus 131 ~~~k~li~~g~iG~i~~i--~~~~~~~~~~~~------------~~~~~-------~~gG~l~d~g~H~ld~~~~l~G-~ 188 (344)
T PRK10206 131 LTAKKAIESGKLGEIVEV--ESHFDYYRPVAE------------TKPGL-------PQDGAFYGLGVHTMDQIISLFG-R 188 (344)
T ss_pred HHHHHHHHcCCCCCeEEE--EEEecccCCccc------------cccCC-------CCCceeechhHHHHHHHHHHcC-C
Confidence 566677765444445443 333222332110 01212 123445666554444 579999 4
Q ss_pred CCceeEEEc-------CCcceeEEEEecCCcEEEec
Q 012004 308 YDNIEIIIH-------PQSIIHSMVETQDSSVIGQL 336 (473)
Q Consensus 308 ~d~I~VvIH-------PQSiIHsmVef~DGSv~Aql 336 (473)
++.+..... .+-..+.+++| +| ..+++
T Consensus 189 ~~~v~a~~~~~~~~~~~~d~~~~~l~f-~~-~~~~i 222 (344)
T PRK10206 189 PDHVAYDIRSLRNKANPDDTFEAQLFY-GD-LKAIV 222 (344)
T ss_pred CeEEEEEeecccCCCCCCceEEEEEEe-CC-EEEEE
Confidence 566655442 23456778888 44 44543
No 31
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=96.55 E-value=0.0082 Score=68.73 Aligned_cols=215 Identities=15% Similarity=0.141 Sum_probs=118.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
-+|+|+| .|.||+..++++.++.+ +++|++++..+ -.+ ++|+-+ | ...+.+.+....
T Consensus 459 i~i~l~G-~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~-~~~-------~~~~gi---~---~~~~~~~~~~~~ 523 (810)
T PRK09466 459 IGLVLFG-KGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSR-RSL-------LNYDGL---D---ASRALAFFDDEA 523 (810)
T ss_pred EEEEEEe-cCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCC-ccc-------cCccCC---C---HHHHHhhHHhhc
Confidence 5899999 79999999999977543 58889986433 211 122111 0 111222111100
Q ss_pred CCcEEEechhhHHHhhcCCC--CCEEEEecccccCcHHHHHHHHcCCcccccccce---eeeccccchHHHhhcCCeE--
Q 012004 149 EKPEILAGEQGVIEAARHPD--AVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET---LIAGGPFVLPLAHKHNIKI-- 221 (473)
Q Consensus 149 ~~~~v~~G~egl~~la~~~~--~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKES---LV~aG~li~~~a~~~~~~I-- 221 (473)
.. ...+.+.+.....+ .++||....|-.......+|+++||.|-.|||.. ...-++-++++|+++|+.+
T Consensus 524 ~~----~~~~~~~e~i~~~~~~~~vvVd~t~~~~~~~~~~~aL~~G~~VVtaNK~~~a~~~~~~~~l~~~a~~~~~~~~y 599 (810)
T PRK09466 524 VE----WDEESLFLWLRAHPYDELVVLDVTASEQLALQYPDFASHGFHVISANKLAGSSPSNFYRQIKDAFAKTGRHWLY 599 (810)
T ss_pred CC----ccHHHHHHHHhhcCCCCcEEEECCCChHHHHHHHHHHHcCCEEEcCCcccccccHHHHHHHHHHHHHcCCeEEE
Confidence 00 12344555554333 4699999988766666679999999999999984 3467888899999999876
Q ss_pred -------eecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCC-----cccccchhh
Q 012004 222 -------LPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMG-----KKITVDSAT 289 (473)
Q Consensus 222 -------lPVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG-----~KITIDSAT 289 (473)
+||- +.|=.+++. .++|.+|.=-=||=-=+ .....-+..+.++||+. -..+| +.--||---
T Consensus 600 EasV~~giPii---~~l~~l~~~--gd~i~~i~GIlnGT~ny-i~~~~~~g~~f~eal~~-Aq~~GyaE~DP~~Dl~G~D 672 (810)
T PRK09466 600 NATVGAGLPIN---HTVRDLRNS--GDSILAISGIFSGTLSW-LFLQFDGSVPFSELVDQ-AWQQGLTEPDPRDDLSGRD 672 (810)
T ss_pred eceeeeccChH---HHHHHHHhc--cCcEEEEEEEEccHHHH-HHHHHhcCCCHHHHHHH-HHHcCCCCCCCccccccHH
Confidence 4773 223222221 23455553222221100 11111257888888863 11222 222233333
Q ss_pred hhhhhHHHHHHhhhcCCC--CCceeEE-EcCCcc
Q 012004 290 LFNKGLEVIEAHYLFGAE--YDNIEII-IHPQSI 320 (473)
Q Consensus 290 mmNKgLEvIEA~~LF~i~--~d~I~Vv-IHPQSi 320 (473)
...|. +|=|+. ||.+ +++|++- +-|+.|
T Consensus 673 ~a~Kl--~ILa~~-~g~~~~~~dv~~~~l~p~~i 703 (810)
T PRK09466 673 VMRKL--VILARE-AGYEIEPDDVRVESLVPAHL 703 (810)
T ss_pred HHHHH--HHHHHH-hCCCCChheEEEeecCCccc
Confidence 34444 345555 5665 4555443 235555
No 32
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=96.52 E-value=0.004 Score=64.68 Aligned_cols=121 Identities=26% Similarity=0.325 Sum_probs=83.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCC--------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHED--------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd--------~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~ 147 (473)
+-+|+|+| .|-||...+++++++.+ .|+|++++..+- .+.. .+.... + +.+...
T Consensus 3 ~v~v~l~G-~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~-~~~~----~~~~~~-----------~-~~~~~~ 64 (333)
T COG0460 3 TVKVGLLG-LGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDG-SLVR----DLDLLN-----------A-EVWTTD 64 (333)
T ss_pred eEEEEEEc-cCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccc-hhcc----cccccc-----------h-hhheec
Confidence 34899999 58899999999998754 677777765432 2110 111100 0 010000
Q ss_pred CCCcEEEechhhHHHhhcCCCCCEEEEeccc-ccCc---HHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeE
Q 012004 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVG-CAGL---KPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKI 221 (473)
Q Consensus 148 ~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG-~aGL---~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~I 221 (473)
...- ++ .+++...++|+||.++.| +..= .-...|+++||-|.-|||--|-.-|+-|++.|+++|+.+
T Consensus 65 ---~~~~---~~-~~~~~~~~~dvvve~~~~d~~~~~~~~~~~~al~~GkhVVTaNK~~lA~~~~el~~~A~~~g~~l 135 (333)
T COG0460 65 ---GALS---LG-DEVLLDEDIDVVVELVGGDVEPAEPADLYLKALENGKHVVTANKALLALHYHELREAAEKNGVKL 135 (333)
T ss_pred ---cccc---cc-HhhhccccCCEEEecCcccCCchhhHHHHHHHHHcCCeEECCCchHhHhhHHHHHHHHHHhCCeE
Confidence 0000 11 345567789999999998 4433 457789999999999999999999999999999999876
No 33
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=96.50 E-value=0.01 Score=56.15 Aligned_cols=194 Identities=19% Similarity=0.207 Sum_probs=107.4
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec--
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG-- 156 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G-- 156 (473)
|+|+|+||.+|.+.++.+.+ ..|+|.+|+=..+ ....++.+.-. -.++..|-.+.+.|.++|.+.+. +-+..+
T Consensus 1 I~V~GatG~~G~~v~~~L~~--~~~~V~~l~R~~~-~~~~~~l~~~g-~~vv~~d~~~~~~l~~al~g~d~-v~~~~~~~ 75 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLS--AGFSVRALVRDPS-SDRAQQLQALG-AEVVEADYDDPESLVAALKGVDA-VFSVTPPS 75 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHH--TTGCEEEEESSSH-HHHHHHHHHTT-TEEEES-TT-HHHHHHHHTTCSE-EEEESSCS
T ss_pred CEEECCccHHHHHHHHHHHh--CCCCcEEEEeccc-hhhhhhhhccc-ceEeecccCCHHHHHHHHcCCce-EEeecCcc
Confidence 78999999999999999998 6899999985553 33444444444 45557888888889988876531 112333
Q ss_pred -------hhhHHHhhcCCCCCEEEEecccccC-c-------HHHH-------HHHHcCCcccccccceeeeccccchHHH
Q 012004 157 -------EQGVIEAARHPDAVTVVTGIVGCAG-L-------KPTV-------AAIEAGKDIALANKETLIAGGPFVLPLA 214 (473)
Q Consensus 157 -------~egl~~la~~~~~D~Vv~AIvG~aG-L-------~ptl-------~Ai~~GK~IaLANKESLV~aG~li~~~a 214 (473)
...++++|....++.+|-.-.|... . .|.+ +.++.- --+=+++.-|.+.-.+.
T Consensus 76 ~~~~~~~~~~li~Aa~~agVk~~v~ss~~~~~~~~~~~~p~~~~~~~k~~ie~~l~~~-----~i~~t~i~~g~f~e~~~ 150 (233)
T PF05368_consen 76 HPSELEQQKNLIDAAKAAGVKHFVPSSFGADYDESSGSEPEIPHFDQKAEIEEYLRES-----GIPYTIIRPGFFMENLL 150 (233)
T ss_dssp CCCHHHHHHHHHHHHHHHT-SEEEESEESSGTTTTTTSTTHHHHHHHHHHHHHHHHHC-----TSEBEEEEE-EEHHHHH
T ss_pred hhhhhhhhhhHHHhhhccccceEEEEEecccccccccccccchhhhhhhhhhhhhhhc-----cccceeccccchhhhhh
Confidence 1235666666678888866666555 1 1121 112211 11234555554332222
Q ss_pred hhcCCeEeecccchhhHHHhhcCCCCCccceEEEEecCCC-CCC-CChhhhhcCCHHHHhcCCCCC-CCcccccchhh-h
Q 012004 215 HKHNIKILPADSEHSAIFQCIQGLPEGALRRIILTASGGA-FRD-WPVEKLKEVKVADALKHPNWS-MGKKITVDSAT-L 290 (473)
Q Consensus 215 ~~~~~~IlPVDSEHsAIfQcL~g~~~~~v~kiiLTASGGP-Fr~-~~~e~L~~vT~~~ALkHPnW~-MG~KITIDSAT-m 290 (473)
... +. .... ...-+.+.+...|++ +.- .+.+++..+.. .+|.||.+. -|+-+.+=+-+ =
T Consensus 151 ~~~--------------~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dvg~~va-~il~~p~~~~~~~~~~~~~~~~t 213 (233)
T PF05368_consen 151 PPF--------------AP-VVDI-KKSKDVVTLPGPGNQKAVPVTDTRDVGRAVA-AILLDPEKHNNGKTIFLAGETLT 213 (233)
T ss_dssp TTT--------------HH-TTCS-CCTSSEEEEETTSTSEEEEEEHHHHHHHHHH-HHHHSGGGTTEEEEEEEGGGEEE
T ss_pred hhh--------------cc-cccc-cccceEEEEccCCCccccccccHHHHHHHHH-HHHcChHHhcCCEEEEeCCCCCC
Confidence 111 00 0001 111125666666662 333 37888888875 677888665 67777664322 2
Q ss_pred hhhhHHHHH
Q 012004 291 FNKGLEVIE 299 (473)
Q Consensus 291 mNKgLEvIE 299 (473)
+|.-.+++|
T Consensus 214 ~~eia~~~s 222 (233)
T PF05368_consen 214 YNEIAAILS 222 (233)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 344444444
No 34
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=96.40 E-value=0.017 Score=59.64 Aligned_cols=109 Identities=21% Similarity=0.193 Sum_probs=72.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
|.||+|+|. |.||+..++.+.++| .|+|+|+... +.+....+++++.-+ +....+.... .+.+ .++.+ .
T Consensus 1 ~ikVaI~G~-GrIGr~va~al~~~~-d~eLvav~d~-~~~~~~~la~~~G~~-~~~~~~~~~~----~~~~--~~i~V-~ 69 (341)
T PRK04207 1 MIKVGVNGY-GTIGKRVADAVAAQP-DMELVGVAKT-KPDYEARVAVEKGYP-LYVADPEREK----AFEE--AGIPV-A 69 (341)
T ss_pred CeEEEEECC-CHHHHHHHHHHhcCC-CcEEEEEECC-ChHHHHHHHHhcCCC-ccccCccccc----cccC--CceEE-c
Confidence 458999999 999999999999875 5999999874 456666666655322 1111111110 0111 11223 2
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLAN 199 (473)
|. +.++. .++|+|+.+.....+..-...++++||.+..-.
T Consensus 70 ~~--~~el~--~~vDVVIdaT~~~~~~e~a~~~~~aGk~VI~~~ 109 (341)
T PRK04207 70 GT--IEDLL--EKADIVVDATPGGVGAKNKELYEKAGVKAIFQG 109 (341)
T ss_pred CC--hhHhh--ccCCEEEECCCchhhHHHHHHHHHCCCEEEEcC
Confidence 22 33443 369999999999989888899999998766554
No 35
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.02 E-value=0.021 Score=65.43 Aligned_cols=129 Identities=19% Similarity=0.185 Sum_probs=86.0
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCC-------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd-------~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~ 147 (473)
.+.+|+|+| .|.||.+.++++.+..+ +++|++++.. +-. .++|+-+ | ...+++.+...
T Consensus 464 ~~~~i~l~G-~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s-~~~-------~~~~~g~---~---~~~~~~~~~~~ 528 (819)
T PRK09436 464 QVLDVFVIG-VGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANS-RKM-------LLDEHGI---D---LDNWREELAEA 528 (819)
T ss_pred ccccEEEEe-cCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcC-Ccc-------ccCCCCC---C---HHHHHHHHhhc
Confidence 456899999 79999999999977543 5778887643 211 1222211 1 12333333211
Q ss_pred CCCcEEEechhhHHHhhcC--CCCCEEEEecccccCcHHHHHHHHcCCcccccccceee---eccccchHHHhhcCCeEe
Q 012004 148 EEKPEILAGEQGVIEAARH--PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLI---AGGPFVLPLAHKHNIKIL 222 (473)
Q Consensus 148 ~~~~~v~~G~egl~~la~~--~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV---~aG~li~~~a~~~~~~Il 222 (473)
. -..+.+.+.+.... .+.|+||....+..-..-..+|+++||.|-.|||-.+. .-++-++++|+++|+.++
T Consensus 529 ~----~~~~~~~~~~~~~~~~~~~~vvvd~t~~~~~~~~~~~al~~g~~VVtaNK~~~a~~~~~~~el~~~a~~~~~~~~ 604 (819)
T PRK09436 529 G----EPFDLDRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLAAGFHVVTPNKKANTSSYAYYHQLREAARKSRRKFL 604 (819)
T ss_pred c----CCCCHHHHHHHHhhcCCCCCEEEECCCChHHHHHHHHHHHcCCEEEcCCchhccCCHHHHHHHHHHHHHcCCeEE
Confidence 1 11234455555432 35799999998864444456999999999999999887 367889999999998876
No 36
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=95.86 E-value=0.02 Score=56.65 Aligned_cols=91 Identities=21% Similarity=0.248 Sum_probs=62.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
|.||+|+|+||-+|+..++.+.++|+ ++|+++..... +... ++ .+ .++.+
T Consensus 1 ~mkV~IiG~~G~mG~~i~~~l~~~~~-~elvav~d~~~-~~~~----~~-~~---------------------~~i~~-- 50 (257)
T PRK00048 1 MIKVAVAGASGRMGRELIEAVEAAED-LELVAAVDRPG-SPLV----GQ-GA---------------------LGVAI-- 50 (257)
T ss_pred CcEEEEECCCCHHHHHHHHHHHhCCC-CEEEEEEecCC-cccc----cc-CC---------------------CCccc--
Confidence 35899999999999999999988765 99999875433 2211 11 00 00111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALAN 199 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLAN 199 (473)
.+.+.++.+ ++|+|+....-.....-...|+++||.+.+.+
T Consensus 51 -~~dl~~ll~--~~DvVid~t~p~~~~~~~~~al~~G~~vvigt 91 (257)
T PRK00048 51 -TDDLEAVLA--DADVLIDFTTPEATLENLEFALEHGKPLVIGT 91 (257)
T ss_pred -cCCHHHhcc--CCCEEEECCCHHHHHHHHHHHHHcCCCEEEEC
Confidence 122444443 58999988777777788899999999988653
No 37
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=95.74 E-value=0.031 Score=57.76 Aligned_cols=33 Identities=18% Similarity=0.475 Sum_probs=29.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
+||+|+|+||.+|..-++.+.+|| .++++++.+
T Consensus 1 ~kVaIiGATG~vG~ellr~L~~hP-~~el~~l~~ 33 (346)
T TIGR01850 1 IKVAIVGASGYTGGELLRLLLNHP-EVEITYLVS 33 (346)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCC-CceEEEEec
Confidence 379999999999999999999996 589998844
No 38
>COG4091 Predicted homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=95.66 E-value=0.11 Score=54.93 Aligned_cols=156 Identities=21% Similarity=0.279 Sum_probs=106.9
Q ss_pred cCCCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 70 RKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 70 ~~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~-f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
|..-..|-||.++|| |.-|+-.+.-+.+-| .|+|+|+|. .|++...+..++ +.|+.-++ +......+..++.. +
T Consensus 11 Raa~G~PiRVGlIGA-G~mG~~ivtQi~~m~-Gm~vvaisd-~~~~~ak~A~~~ag~~~~~~~-e~~~~s~~a~Ai~a-G 85 (438)
T COG4091 11 RAAEGKPIRVGLIGA-GEMGTGIVTQIASMP-GMEVVAISD-RNLDAAKRAYDRAGGPKIEAV-EADDASKMADAIEA-G 85 (438)
T ss_pred HhccCCceEEEEecc-cccchHHHHHHhhcC-CceEEEEec-ccchHHHHHHHHhcCCccccc-ccchhhHHHHHHhc-C
Confidence 344567889999997 677888887777654 699999985 577777766654 56665444 22233445555532 1
Q ss_pred CCcEEEechhhHHHhhcCCCCCEEEEecccc--cCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEee-cc
Q 012004 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILP-AD 225 (473)
Q Consensus 149 ~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~--aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlP-VD 225 (473)
+ -.+.++ ..++...+..|+||.| .|. .|-.-.+.||.+||-|-+-|=|.=|+=|+++++.|.+.|+-.-= --
T Consensus 86 -K-i~vT~D--~~~i~~~~~IdvIIdA-TG~p~vGA~~~l~Ai~h~KHlVMmNVEaDvtIGp~Lk~~Ad~~GviyS~~~G 160 (438)
T COG4091 86 -K-IAVTDD--AELIIANDLIDVIIDA-TGVPEVGAKIALEAILHGKHLVMMNVEADVTIGPILKQQADAAGVIYSGGAG 160 (438)
T ss_pred -c-EEEecc--hhhhhcCCcceEEEEc-CCCcchhhHhHHHHHhcCCeEEEEEeeeceeecHHHHHHHhhcCeEEeccCC
Confidence 1 223333 3445667889999987 354 36677899999999999999999999999999999988843221 22
Q ss_pred cchhhHHHhh
Q 012004 226 SEHSAIFQCI 235 (473)
Q Consensus 226 SEHsAIfQcL 235 (473)
-|-+++-.+.
T Consensus 161 DeP~~~mEL~ 170 (438)
T COG4091 161 DEPSSCMELY 170 (438)
T ss_pred CCcHHHHHHH
Confidence 3455554443
No 39
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=95.61 E-value=0.066 Score=53.40 Aligned_cols=97 Identities=14% Similarity=0.155 Sum_probs=61.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
-||+|.|++|-+|+.-++.+.++| +++++++..+.+-+...+ ...++... ...++.+.
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~-~~elvav~d~~~~~~~~~----------------~~~~~~~~---~~~gv~~~-- 59 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAE-GLQLVAAFERHGSSLQGT----------------DAGELAGI---GKVGVPVT-- 59 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCC-CCEEEEEEecCCccccCC----------------CHHHhcCc---CcCCceee--
Confidence 489999999999999999999875 599999887554332110 01111000 00112222
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLA 198 (473)
+.+.++ ..++|+||....=.+...-...|+++||.|...
T Consensus 60 -~d~~~l--~~~~DvVIdfT~p~~~~~~~~~al~~g~~vVig 98 (266)
T TIGR00036 60 -DDLEAV--ETDPDVLIDFTTPEGVLNHLKFALEHGVRLVVG 98 (266)
T ss_pred -CCHHHh--cCCCCEEEECCChHHHHHHHHHHHHCCCCEEEE
Confidence 223444 245899999876555566677888888877653
No 40
>PLN02700 homoserine dehydrogenase family protein
Probab=95.34 E-value=0.13 Score=54.52 Aligned_cols=56 Identities=25% Similarity=0.185 Sum_probs=46.8
Q ss_pred CCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEe
Q 012004 166 HPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKIL 222 (473)
Q Consensus 166 ~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~Il 222 (473)
....+++|.+..+..-......|+++|+.|..|||-.+...++.+.++++ ++++++
T Consensus 107 ~~~~~ViVD~T~s~~~~~~y~~aL~~G~hVVTaNK~~~a~~~~~~~~la~-~~~~~~ 162 (377)
T PLN02700 107 KSTGLVVVDCSASMETIGALNEAVDLGCCIVLANKKPLTSTLEDYDKLAA-HPRRIR 162 (377)
T ss_pred ccCCCEEEECCCChHHHHHHHHHHHCCCeEEcCCchHhccCHHHHHHHHH-cCCeEE
Confidence 34469999999886666677789999999999999999999999988885 677654
No 41
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.21 E-value=0.15 Score=47.60 Aligned_cols=44 Identities=27% Similarity=0.456 Sum_probs=33.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+++.|+|+||.||..+...+.++ ..+|+.+ .+|.+++.+.+.++
T Consensus 29 ~~vlVlGgtG~iG~~~a~~l~~~--g~~V~l~--~R~~~~~~~l~~~l 72 (194)
T cd01078 29 KTAVVLGGTGPVGQRAAVLLARE--GARVVLV--GRDLERAQKAADSL 72 (194)
T ss_pred CEEEEECCCCHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHH
Confidence 68999999999999998888875 3566655 46777776666544
No 42
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=95.21 E-value=0.061 Score=49.75 Aligned_cols=123 Identities=19% Similarity=0.258 Sum_probs=71.5
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechh
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~e 158 (473)
|.|+|+||+||....+-+.+. .++|++++..++-+.+.+.-. +..++ ..|-.+...+
T Consensus 1 IlI~GatG~iG~~l~~~l~~~--g~~v~~~~~~~~~~~~~~~~~--~~~~~-~~dl~~~~~~------------------ 57 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKK--GHEVIVLSRSSNSESFEEKKL--NVEFV-IGDLTDKEQL------------------ 57 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHT--TTEEEEEESCSTGGHHHHHHT--TEEEE-ESETTSHHHH------------------
T ss_pred EEEEccCCHHHHHHHHHHHHc--CCccccccccccccccccccc--eEEEE-Eeeccccccc------------------
Confidence 789999999999999999876 677889988877665433222 22222 1222223333
Q ss_pred hHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhhcCC
Q 012004 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQGL 238 (473)
Q Consensus 159 gl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL~g~ 238 (473)
.++.+..++|.|+...... + .-...+..+...-+| |.+-.-+++.++++
T Consensus 58 --~~~~~~~~~d~vi~~a~~~-~---~~~~~~~~~~~~~~n----~~~~~~ll~~~~~~--------------------- 106 (236)
T PF01370_consen 58 --EKLLEKANIDVVIHLAAFS-S---NPESFEDPEEIIEAN----VQGTRNLLEAAREA--------------------- 106 (236)
T ss_dssp --HHHHHHHTESEEEEEBSSS-S---HHHHHHSHHHHHHHH----HHHHHHHHHHHHHH---------------------
T ss_pred --cccccccCceEEEEeeccc-c---ccccccccccccccc----cccccccccccccc---------------------
Confidence 3333333689999876432 2 111123334444444 33344444555433
Q ss_pred CCCccceEEEEecCCCCCCC
Q 012004 239 PEGALRRIILTASGGAFRDW 258 (473)
Q Consensus 239 ~~~~v~kiiLTASGGPFr~~ 258 (473)
++++++.+.|.+-|-+.
T Consensus 107 ---~~~~~i~~sS~~~y~~~ 123 (236)
T PF01370_consen 107 ---GVKRFIFLSSASVYGDP 123 (236)
T ss_dssp ---TTSEEEEEEEGGGGTSS
T ss_pred ---ccccccccccccccccc
Confidence 24788888887666544
No 43
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=95.13 E-value=0.21 Score=46.97 Aligned_cols=65 Identities=20% Similarity=0.178 Sum_probs=45.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|+|.|.|+||.||..+.+-+.+. .++|+.+. ++..+.+.++.++.+.+...+ .|-.+...+...
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~vi~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (248)
T TIGR01832 5 GKVALVTGANTGLGQGIAVGLAEA--GADIVGAG-RSEPSETQQQVEALGRRFLSLTADLSDIEAIKAL 70 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEc-CchHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 478999999999999999998875 67888765 444566777777766554443 454444455443
No 44
>PRK08219 short chain dehydrogenase; Provisional
Probab=95.04 E-value=0.12 Score=47.52 Aligned_cols=63 Identities=13% Similarity=0.097 Sum_probs=39.7
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE-EEEeCcccHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV-VAVRNESLLDEIKEA 143 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~-v~v~de~~~~~l~~~ 143 (473)
++|++.|.|+||+||....+.+.+. ++|+++. ++.+.+.+...+. +.. +...|-.+...+++.
T Consensus 2 ~~~~vlVtG~~g~iG~~l~~~l~~~---~~V~~~~--r~~~~~~~~~~~~-~~~~~~~~D~~~~~~~~~~ 65 (227)
T PRK08219 2 ERPTALITGASRGIGAAIARELAPT---HTLLLGG--RPAERLDELAAEL-PGATPFPVDLTDPEAIAAA 65 (227)
T ss_pred CCCEEEEecCCcHHHHHHHHHHHhh---CCEEEEe--CCHHHHHHHHHHh-ccceEEecCCCCHHHHHHH
Confidence 3578999999999999999988874 7788775 4555544333333 222 223444444444443
No 45
>PLN02778 3,5-epimerase/4-reductase
Probab=94.81 E-value=0.11 Score=51.98 Aligned_cols=52 Identities=21% Similarity=0.181 Sum_probs=38.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVA 130 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~~f~P~~v~ 130 (473)
+||.|+|+||+||.....-+.+. .++|+.... ..+.+.+....++.+|++|.
T Consensus 10 ~kiLVtG~tGfiG~~l~~~L~~~--g~~V~~~~~~~~~~~~v~~~l~~~~~D~Vi 62 (298)
T PLN02778 10 LKFLIYGKTGWIGGLLGKLCQEQ--GIDFHYGSGRLENRASLEADIDAVKPTHVF 62 (298)
T ss_pred CeEEEECCCCHHHHHHHHHHHhC--CCEEEEecCccCCHHHHHHHHHhcCCCEEE
Confidence 57999999999999999988876 456765432 34556666666667787765
No 46
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.77 E-value=0.28 Score=51.17 Aligned_cols=34 Identities=29% Similarity=0.437 Sum_probs=28.9
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
...++|.|.|+||.||+...+-+.+. .++|++++
T Consensus 58 ~~~~kVLVtGatG~IG~~l~~~Ll~~--G~~V~~l~ 91 (390)
T PLN02657 58 PKDVTVLVVGATGYIGKFVVRELVRR--GYNVVAVA 91 (390)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 34568999999999999999988765 68999886
No 47
>PRK11863 N-acetyl-gamma-glutamyl-phosphate reductase; Provisional
Probab=94.77 E-value=0.044 Score=56.55 Aligned_cols=57 Identities=12% Similarity=0.170 Sum_probs=40.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh-CCCEEEEeC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF-KPQVVAVRN 133 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f-~P~~v~v~d 133 (473)
++.||+|+|+||.+|...++++.+|| .|+++++++.+..+. ..--..| +.+.|+++-
T Consensus 1 ~~~~VaIvGAtGy~G~eLlrlL~~hp-~~~l~~~~s~~~~~~-~~~~~~~~~~DvvFlal 58 (313)
T PRK11863 1 MKPKVFIDGEAGTTGLQIRERLAGRS-DIELLSIPEAKRKDA-AARRELLNAADVAILCL 58 (313)
T ss_pred CCcEEEEECCCCHHHHHHHHHHhcCC-CeEEEEEecCCCCcc-cCchhhhcCCCEEEECC
Confidence 35689999999999999999999998 699999987654332 1111112 356776643
No 48
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=94.72 E-value=0.064 Score=55.79 Aligned_cols=38 Identities=32% Similarity=0.444 Sum_probs=32.3
Q ss_pred eeEEEEccCChHhHHHHHHHHh--CCCceEEEEEeccCCHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNIT 115 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~Nv~ 115 (473)
.+|+|+||||-+|...++++.+ ||. +++..++..++..
T Consensus 5 ~~vaIvGATG~vG~ellrlL~~~~hP~-~~l~~laS~~saG 44 (336)
T PRK08040 5 WNIALLGATGAVGEALLELLAERQFPV-GELYALASEESAG 44 (336)
T ss_pred CEEEEEccCCHHHHHHHHHHhcCCCCc-eEEEEEEccCcCC
Confidence 4899999999999999999998 774 8999997665443
No 49
>PLN02968 Probable N-acetyl-gamma-glutamyl-phosphate reductase
Probab=94.66 E-value=0.036 Score=58.38 Aligned_cols=40 Identities=28% Similarity=0.518 Sum_probs=34.5
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCH
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI 114 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv 114 (473)
..++||+|+||||.+|...++++.+|| .++|..++.+++.
T Consensus 36 ~~~~kVaIvGATG~vG~eLlrlL~~hP-~~el~~l~s~~sa 75 (381)
T PLN02968 36 EEKKRIFVLGASGYTGAEVRRLLANHP-DFEITVMTADRKA 75 (381)
T ss_pred ccccEEEEECCCChHHHHHHHHHHhCC-CCeEEEEEChhhc
Confidence 356799999999999999999999997 5899999875443
No 50
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=94.59 E-value=0.34 Score=46.20 Aligned_cols=66 Identities=14% Similarity=0.114 Sum_probs=46.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.+..+-+.++ .++|+.+.-+++.+.+.+...+...+...+ .|-...+.++..
T Consensus 15 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 81 (258)
T PRK06935 15 GKVAIVTGGNTGLGQGYAVALAKA--GADIIITTHGTNWDETRRLIEKEGRKVTFVQVDLTKPESAEKV 81 (258)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCcHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 378999999999999999999876 678887765566777777766655443332 444444444443
No 51
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=94.59 E-value=0.34 Score=46.03 Aligned_cols=84 Identities=14% Similarity=0.102 Sum_probs=53.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|+||.||....+-+.++ .++|+.++ +|.+.+.+...+..++...+ .|-.+.+.+++.+.
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~i~~~~~---------- 66 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQ--GHKVIATG--RRQERLQELKDELGDNLYIAQLDVRNRAAIEEMLA---------- 66 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHhccceEEEEecCCCHHHHHHHHH----------
Confidence 46999999999999999998876 67887664 45666665555555444333 45455555554331
Q ss_pred chhhHHHhhcCCCCCEEEEecccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGC 179 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~ 179 (473)
.+.+ ...+.|+||++....
T Consensus 67 ---~~~~--~~~~id~vi~~ag~~ 85 (248)
T PRK10538 67 ---SLPA--EWRNIDVLVNNAGLA 85 (248)
T ss_pred ---HHHH--HcCCCCEEEECCCcc
Confidence 1111 124689999876543
No 52
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=94.47 E-value=0.12 Score=51.57 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=42.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc----CCHHHHHHHHHhhCCCEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG----SNITLLADQVKRFKPQVVAVR 132 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~----~Nv~~L~~q~~~f~P~~v~v~ 132 (473)
.||.|+|+||.||..-...+.+ ..++|+++.-. .+.+.+.+..++++|++|.-.
T Consensus 1 MriLI~GasG~lG~~l~~~l~~--~~~~v~~~~r~~~dl~d~~~~~~~~~~~~pd~Vin~ 58 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKE--RGYEVIATSRSDLDLTDPEAVAKLLEAFKPDVVINC 58 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTT--TSEEEEEESTTCS-TTSHHHHHHHHHHH--SEEEE-
T ss_pred CEEEEECCCCHHHHHHHHHHhh--CCCEEEEeCchhcCCCCHHHHHHHHHHhCCCeEecc
Confidence 4799999999999999999887 47999998432 366788888889999988753
No 53
>PRK12829 short chain dehydrogenase; Provisional
Probab=94.42 E-value=0.47 Score=44.85 Aligned_cols=83 Identities=17% Similarity=0.155 Sum_probs=51.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC--EEEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ--VVAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~--~v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
.|++.|.|+||.||....+-+.++ .++|+.+. +|-+.+.+...++.-. .+...|-.+...+++.+.
T Consensus 11 ~~~vlItGa~g~iG~~~a~~L~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 78 (264)
T PRK12829 11 GLRVLVTGGASGIGRAIAEAFAEA--GARVHVCD--VSEAALAATAARLPGAKVTATVADVADPAQVERVFD-------- 78 (264)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCceEEEEccCCCHHHHHHHHH--------
Confidence 378999999999999999999876 56777665 3445555444444222 233445554444554331
Q ss_pred EechhhHHHhhcCCCCCEEEEecc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIV 177 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIv 177 (473)
.+.+. ..++|.|+....
T Consensus 79 -----~~~~~--~~~~d~vi~~ag 95 (264)
T PRK12829 79 -----TAVER--FGGLDVLVNNAG 95 (264)
T ss_pred -----HHHHH--hCCCCEEEECCC
Confidence 11111 236899998754
No 54
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=94.40 E-value=0.39 Score=45.16 Aligned_cols=65 Identities=15% Similarity=0.156 Sum_probs=42.0
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~---~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
++|+|.|.|+||.||......+.+. .++|+. ...+|.+.+. ++++++.++...+ .|-.+...+++
T Consensus 1 m~k~ilItGas~giG~~la~~l~~~--g~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (248)
T PRK06947 1 MRKVVLITGASRGIGRATAVLAAAR--GWSVGI-NYARDAAAAEETADAVRAAGGRACVVAGDVANEADVIA 69 (248)
T ss_pred CCcEEEEeCCCCcHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHhcCCcEEEEEeccCCHHHHHH
Confidence 4689999999999999999998876 577754 3455665544 4444444444443 34444444443
No 55
>PRK08267 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.48 Score=45.13 Aligned_cols=87 Identities=21% Similarity=0.146 Sum_probs=54.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-CCE-EEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQV-VAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~-P~~-v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
||++.|.|+||.||....+-+.+. .++|+.+. +|.+.+.+...+.. .+. +...|-.+...+.+.+.
T Consensus 1 mk~vlItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~-------- 68 (260)
T PRK08267 1 MKSIFITGAASGIGRATALLFAAE--GWRVGAYD--INEAGLAALAAELGAGNAWTGALDVTDRAAWDAALA-------- 68 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH--------
Confidence 578999999999999999988875 57888764 66777766655543 121 22244444444544331
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccC
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAG 181 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aG 181 (473)
.+.+-. ..++|+||+.. |..+
T Consensus 69 -----~~~~~~-~~~id~vi~~a-g~~~ 89 (260)
T PRK08267 69 -----DFAAAT-GGRLDVLFNNA-GILR 89 (260)
T ss_pred -----HHHHHc-CCCCCEEEECC-CCCC
Confidence 111110 34689999873 5433
No 56
>PRK07806 short chain dehydrogenase; Provisional
Probab=94.25 E-value=0.55 Score=44.20 Aligned_cols=66 Identities=18% Similarity=0.133 Sum_probs=40.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||....+-+.+. .++|++++-+. +.+.+.+..+....+... ..|-.+.+.++..
T Consensus 6 ~k~vlItGasggiG~~l~~~l~~~--G~~V~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 74 (248)
T PRK07806 6 GKTALVTGSSRGIGADTAKILAGA--GAHVVVNYRQKAPRANKVVAEIEAAGGRASAVGADLTDEESVAAL 74 (248)
T ss_pred CcEEEEECCCCcHHHHHHHHHHHC--CCEEEEEeCCchHhHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 478999999999999999988775 67888765322 223333334443333332 2454544445443
No 57
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.22 E-value=0.57 Score=43.34 Aligned_cols=84 Identities=19% Similarity=0.156 Sum_probs=50.1
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKEALANVEEK 150 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~---L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~ 150 (473)
.+|+|.|.|+||.||.+..+-+.+. .++|+.++ +++-+. +.+...+..++...+ .|-.+...+++.+.
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~----- 76 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARA--GADVVVHY-RSDEEAAEELVEAVEALGRRAQAVQADVTDKAALEAAVA----- 76 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe-CCCHHHHHHHHHHHHhcCCceEEEECCcCCHHHHHHHHH-----
Confidence 3579999999999999999988775 55665544 334433 444444444443333 45444445554332
Q ss_pred cEEEechhhHHHhhcCCCCCEEEEec
Q 012004 151 PEILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 151 ~~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
++.+ ...++|.|++..
T Consensus 77 --------~~~~--~~~~id~vi~~a 92 (249)
T PRK12825 77 --------AAVE--RFGRIDILVNNA 92 (249)
T ss_pred --------HHHH--HcCCCCEEEECC
Confidence 1111 124689988854
No 58
>PRK06728 aspartate-semialdehyde dehydrogenase; Provisional
Probab=94.14 E-value=0.087 Score=55.14 Aligned_cols=36 Identities=22% Similarity=0.576 Sum_probs=29.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE---EEEEeccCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALAAGSN 113 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~---VvaLaa~~N 113 (473)
.+|+|+||||.+|...++++.+||+ |+ +..++..++
T Consensus 6 ~~VaIvGATG~vG~ell~lL~~h~~-f~v~~l~~~aS~~s 44 (347)
T PRK06728 6 YHVAVVGATGAVGQKIIELLEKETK-FNIAEVTLLSSKRS 44 (347)
T ss_pred CEEEEEeCCCHHHHHHHHHHHHCCC-CCcccEEEEECccc
Confidence 4899999999999999999999876 77 556655433
No 59
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.04 E-value=0.15 Score=49.16 Aligned_cols=31 Identities=26% Similarity=0.427 Sum_probs=26.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
||.|+|+||+||....+-+.+. .++|++++-
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~--g~~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPE--GRVVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhc--CCEEEEeCC
Confidence 5899999999999999988875 688888753
No 60
>PRK06101 short chain dehydrogenase; Provisional
Probab=93.97 E-value=0.42 Score=45.31 Aligned_cols=65 Identities=22% Similarity=0.203 Sum_probs=43.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l 144 (473)
|+++.|.|+||.||.+..+-+.+. .++|+.+ .+|.+.+.++..+...-.....|-.+.+.+++.+
T Consensus 1 ~~~vlItGas~giG~~la~~L~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 65 (240)
T PRK06101 1 MTAVLITGATSGIGKQLALDYAKQ--GWQVIAC--GRNQSVLDELHTQSANIFTLAFDVTDHPGTKAAL 65 (240)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhC--CCEEEEE--ECCHHHHHHHHHhcCCCeEEEeeCCCHHHHHHHH
Confidence 478999999999999988888765 5777765 3577777666554322222335555556666544
No 61
>PRK12828 short chain dehydrogenase; Provisional
Probab=93.92 E-value=0.49 Score=43.72 Aligned_cols=82 Identities=15% Similarity=0.095 Sum_probs=48.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEEEEeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVAVRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~---~f~P~~v~v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|+|.|.|+||+||....+-+.+. .++|++++ +|.+.+.+... ....+.+ ..|-.+...++..+.
T Consensus 7 ~k~vlItGatg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~-~~D~~~~~~~~~~~~------- 74 (239)
T PRK12828 7 GKVVAITGGFGGLGRATAAWLAAR--GARVALIG--RGAAPLSQTLPGVPADALRIG-GIDLVDPQAARRAVD------- 74 (239)
T ss_pred CCEEEEECCCCcHhHHHHHHHHHC--CCeEEEEe--CChHhHHHHHHHHhhcCceEE-EeecCCHHHHHHHHH-------
Confidence 478999999999999999988776 67887766 44444433333 2232322 244444444544331
Q ss_pred EEechhhHHHhhcCCCCCEEEEecc
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGIV 177 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AIv 177 (473)
.+.+ ....+|.|++...
T Consensus 75 ------~~~~--~~~~~d~vi~~ag 91 (239)
T PRK12828 75 ------EVNR--QFGRLDALVNIAG 91 (239)
T ss_pred ------HHHH--HhCCcCEEEECCc
Confidence 1111 1236899988643
No 62
>PRK12742 oxidoreductase; Provisional
Probab=93.92 E-value=0.48 Score=44.17 Aligned_cols=63 Identities=14% Similarity=0.117 Sum_probs=41.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
.|+|.|.|+||.||..+...+.+. .++|+.+ ..++.+.+.+...+++...+ ..|-.+...+.+
T Consensus 6 ~k~vlItGasggIG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~l~~~~~~~~~-~~D~~~~~~~~~ 68 (237)
T PRK12742 6 GKKVLVLGGSRGIGAAIVRRFVTD--GANVRFT-YAGSKDAAERLAQETGATAV-QTDSADRDAVID 68 (237)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEe-cCCCHHHHHHHHHHhCCeEE-ecCCCCHHHHHH
Confidence 478999999999999999988875 5677654 34456666666666654433 344444344443
No 63
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=93.91 E-value=0.21 Score=55.49 Aligned_cols=112 Identities=16% Similarity=0.196 Sum_probs=61.1
Q ss_pred CeeEEEEccCChHhHHHHHHHH-hCCCceEEEEEeccCCHHHHHHHHHhh-C-CCEE-EEeCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVA-EHEDKFRVVALAAGSNITLLADQVKRF-K-PQVV-AVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~-~~pd~f~VvaLaa~~Nv~~L~~q~~~f-~-P~~v-~v~de~~~~~l~~~l~~~~~~~ 151 (473)
-|+|.|-|+|||||..-..-+. .+|.+..+..-.=. +...+....++. . .+.. .+.|=.+++.+...+.+. ++
T Consensus 250 gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~-~~~~i~~el~~~~~~~~~~~~igdVrD~~~~~~~~~~~--kv 326 (588)
T COG1086 250 GKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY-KLYLIDMELREKFPELKLRFYIGDVRDRDRVERAMEGH--KV 326 (588)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH-HHHHHHHHHHhhCCCcceEEEecccccHHHHHHHHhcC--CC
Confidence 4899999999999998776554 45776666543222 223333333332 1 2333 356777777777776532 34
Q ss_pred EEEechhhHHH--hhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 152 EILAGEQGVIE--AARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 152 ~v~~G~egl~~--la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
++.+-..++.. +++.....-|-|=|-|. ..-.-+|+++|
T Consensus 327 d~VfHAAA~KHVPl~E~nP~Eai~tNV~GT--~nv~~aa~~~~ 367 (588)
T COG1086 327 DIVFHAAALKHVPLVEYNPEEAIKTNVLGT--ENVAEAAIKNG 367 (588)
T ss_pred ceEEEhhhhccCcchhcCHHHHHHHhhHhH--HHHHHHHHHhC
Confidence 55555555443 23333333444444454 23334555555
No 64
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=93.85 E-value=0.57 Score=44.24 Aligned_cols=67 Identities=15% Similarity=0.191 Sum_probs=43.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEE-EeCcccHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKEAL 144 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~l 144 (473)
.|++.|.|+||.||..+...+.++ .++|+.+.-.. ..+.+.+++++..++... ..|-.+...+++.+
T Consensus 7 ~~~vlItGasg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 75 (262)
T PRK13394 7 GKTAVVTGAASGIGKEIALELARA--GAAVAIADLNQDGANAVADEINKAGGKAIGVAMDVTNEDAVNAGI 75 (262)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCChHHHHHHHHHHHhcCceEEEEECCCCCHHHHHHHH
Confidence 478999999999999999999886 56777553211 134455555555554433 35655555565543
No 65
>PRK07060 short chain dehydrogenase; Provisional
Probab=93.84 E-value=0.56 Score=43.83 Aligned_cols=62 Identities=24% Similarity=0.178 Sum_probs=43.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
|++.|.|+||.||..+...+.+. .++|+.++ ++.+.+.+...+++... ...|-.+...+++.
T Consensus 10 ~~~lItGa~g~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~v~~~ 71 (245)
T PRK07060 10 KSVLVTGASSGIGRACAVALAQR--GARVVAAA--RNAAALDRLAGETGCEP-LRLDVGDDAAIRAA 71 (245)
T ss_pred CEEEEeCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCeE-EEecCCCHHHHHHH
Confidence 68999999999999999999886 56777654 56666666666655433 33455444444443
No 66
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=93.81 E-value=0.44 Score=44.76 Aligned_cols=83 Identities=22% Similarity=0.227 Sum_probs=51.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH---HHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD---QVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~---q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||....+-+.++ .++|+.+.. +|-+.+.+ +++....+...+ .|-.+...++..+..
T Consensus 4 ~~~vlItGa~g~iG~~~a~~l~~~--g~~v~~~~~-r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~----- 75 (250)
T PRK08063 4 GKVALVTGSSRGIGKAIALRLAEE--GYDIAVNYA-RSRKAAEETAEEIEALGRKALAVKANVGDVEKIKEMFAQ----- 75 (250)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEcC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHHH-----
Confidence 368999999999999999999887 567765433 44454444 444444444443 555555555554421
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
+.+ ....+|+||+..
T Consensus 76 --------~~~--~~~~id~vi~~a 90 (250)
T PRK08063 76 --------IDE--EFGRLDVFVNNA 90 (250)
T ss_pred --------HHH--HcCCCCEEEECC
Confidence 111 123589999974
No 67
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.78 E-value=0.97 Score=41.88 Aligned_cols=66 Identities=20% Similarity=0.148 Sum_probs=41.2
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
..|++.|.|+||.||....+-+.+. .++|+.++.+ ..+.+.+. .+..+.++..+ .|-.+...+++.
T Consensus 4 ~~~~vlItG~sg~iG~~l~~~l~~~--G~~v~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (248)
T PRK05557 4 EGKVALVTGASRGIGRAIAERLAAQ--GANVVINYAS-SEAGAEALVAEIGALGGKALAVQGDVSDAESVERA 73 (248)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCC-chhHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 3478999999999999999998875 6788766543 33333333 33334444433 355554455443
No 68
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.72 Score=44.42 Aligned_cols=64 Identities=14% Similarity=0.148 Sum_probs=40.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.....-+.+. ..+|+++. ++.+.+.++..++..+... -.|-.+...+++.
T Consensus 2 ~k~vlVtGasg~IG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (276)
T PRK06482 2 SKTWFITGASSGFGRGMTERLLAR--GDRVAATV--RRPDALDDLKARYGDRLWVLQLDVTDSAAVRAV 66 (276)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHhccCceEEEEccCCCHHHHHHH
Confidence 478999999999999999888765 56776654 4556555544444333322 2344444444443
No 69
>PRK12743 oxidoreductase; Provisional
Probab=93.76 E-value=0.52 Score=44.99 Aligned_cols=64 Identities=19% Similarity=0.103 Sum_probs=42.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv---~~L~~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
+|++.|.|+||.||.+....+.++ .++|+.+. .++. +.+.++.+++..+...+ .|-.+...++.
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~--G~~V~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 69 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQ--GFDIGITW-HSDEEGAKETAEEVRSHGVRAEIRQLDLSDLPEGAQ 69 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHhcCCceEEEEccCCCHHHHHH
Confidence 578999999999999999999886 67886654 3343 44455555555444443 44444444444
No 70
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=93.75 E-value=0.34 Score=46.48 Aligned_cols=38 Identities=24% Similarity=0.354 Sum_probs=30.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL 117 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L 117 (473)
+|+|.|+|+||.||...+.-+.+. .++|++++ +|.+.+
T Consensus 17 ~~~ilItGasG~iG~~l~~~L~~~--g~~V~~~~--R~~~~~ 54 (251)
T PLN00141 17 TKTVFVAGATGRTGKRIVEQLLAK--GFAVKAGV--RDVDKA 54 (251)
T ss_pred CCeEEEECCCcHHHHHHHHHHHhC--CCEEEEEe--cCHHHH
Confidence 578999999999999999988775 68888875 444544
No 71
>PRK07024 short chain dehydrogenase; Provisional
Probab=93.72 E-value=0.85 Score=43.57 Aligned_cols=45 Identities=16% Similarity=0.197 Sum_probs=35.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+|+|.|.|+||.||++..+.+.+. .++|+.+ .+|.+.+.+...+.
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~ 46 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQ--GATLGLV--ARRTDALQAFAARL 46 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhc
Confidence 578999999999999999999876 5677755 35677776666554
No 72
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=93.64 E-value=0.95 Score=41.88 Aligned_cols=83 Identities=17% Similarity=0.084 Sum_probs=50.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~---~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
+|+|.|.|+||.||....+.+.++ .++|+.++ +|-+.+.+... +...+...+ .|-.+...+...+.
T Consensus 5 ~~~ilItGasg~iG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 74 (246)
T PRK05653 5 GKTALVTGASRGIGRAIALRLAAD--GAKVVIYD--SNEEAAEALAAELRAAGGEARVLVFDVSDEAAVRALIE------ 74 (246)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CChhHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH------
Confidence 378999999999999999998876 56775554 34444444333 333444333 44444444544432
Q ss_pred EEEechhhHHHhhcCCCCCEEEEecc
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGIV 177 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AIv 177 (473)
++.+. ...+|.|+....
T Consensus 75 -------~~~~~--~~~id~vi~~ag 91 (246)
T PRK05653 75 -------AAVEA--FGALDILVNNAG 91 (246)
T ss_pred -------HHHHH--hCCCCEEEECCC
Confidence 11211 246899988753
No 73
>PRK08664 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=93.62 E-value=0.079 Score=54.69 Aligned_cols=33 Identities=33% Similarity=0.569 Sum_probs=29.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (473)
++.||+|+|+||.||...++.+.+||+ ++++++
T Consensus 2 ~~~~V~I~GatG~iG~~l~~~L~~~p~-~el~~~ 34 (349)
T PRK08664 2 MKLKVGILGATGMVGQRFVQLLANHPW-FEVTAL 34 (349)
T ss_pred CCcEEEEECCCCHHHHHHHHHHHcCCC-ceEEEE
Confidence 457999999999999999999999875 699998
No 74
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.60 E-value=0.85 Score=44.13 Aligned_cols=48 Identities=25% Similarity=0.297 Sum_probs=35.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~ 127 (473)
.|+|.|.|+||.||.+..+-+.+. .++|+.+. +|-+.+.+...++..+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~~~~~~~~ 50 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALER--GDRVVATA--RDTATLADLAEKYGDR 50 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHhccCC
Confidence 478999999999999999988765 57777654 5666666665555433
No 75
>PRK09186 flagellin modification protein A; Provisional
Probab=93.56 E-value=0.63 Score=43.91 Aligned_cols=82 Identities=17% Similarity=0.161 Sum_probs=51.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-----CCEEE-EeCcccHHHHHHHHhcCCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-----PQVVA-VRNESLLDEIKEALANVEE 149 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~-----P~~v~-v~de~~~~~l~~~l~~~~~ 149 (473)
.|++.|.|+||.||....+.+.+. .++|+.++ ++-+.+.+...+.+ ..... ..|-.+...+.+.+.
T Consensus 4 ~k~vlItGas~giG~~~a~~l~~~--g~~v~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~---- 75 (256)
T PRK09186 4 GKTILITGAGGLIGSALVKAILEA--GGIVIAAD--IDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLS---- 75 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--cChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHH----
Confidence 378999999999999999999876 67887763 45555544444432 22333 456555555555432
Q ss_pred CcEEEechhhHHHhhcCCCCCEEEEec
Q 012004 150 KPEILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 150 ~~~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 76 ---------~~~~--~~~~id~vi~~A 91 (256)
T PRK09186 76 ---------KSAE--KYGKIDGAVNCA 91 (256)
T ss_pred ---------HHHH--HcCCccEEEECC
Confidence 1111 124589998774
No 76
>TIGR03855 NAD_NadX aspartate dehydrogenase. Members of this protein family are L-aspartate dehydrogenase, as shown for the NADP-dependent enzyme TM_1643 of Thermotoga maritima. Members lack homology to NadB, the aspartate oxidase (EC 1.4.3.16) of most mesophilic bacteria (described by TIGR00551), which this enzyme replaces in the generation of oxaloacetate from aspartate for the NAD biosynthetic pathway. All members of the seed alignment are found adjacent to other genes of NAD biosynthesis, although other uses of L-aspartate dehydrogenase may occur.
Probab=93.51 E-value=0.8 Score=45.24 Aligned_cols=90 Identities=18% Similarity=0.130 Sum_probs=68.2
Q ss_pred HHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeec-----cccchHHHhhcCCeEeecccchhhHHHh
Q 012004 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG-----GPFVLPLAHKHNIKILPADSEHSAIFQC 234 (473)
Q Consensus 160 l~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~a-----G~li~~~a~~~~~~IlPVDSEHsAIfQc 234 (473)
+.++.. +++|.|+.+..=.+=-.-+.+++++||.|.. |+..+- ..-+.+.++++|.++..- |-+-+.++.
T Consensus 30 ~~eLl~-~~vDaVviatp~~~H~e~a~~aL~aGkhVl~---~s~gAlad~e~~~~l~~aA~~~g~~l~i~-sGai~g~d~ 104 (229)
T TIGR03855 30 FDEFLP-EDVDIVVEAASQEAVKEYAEKILKNGKDLLI---MSVGALADRELRERLREVARSSGRKVYIP-SGAIGGLDA 104 (229)
T ss_pred HHHHhc-CCCCEEEECCChHHHHHHHHHHHHCCCCEEE---ECCcccCCHHHHHHHHHHHHhcCCEEEEC-hHHHHHHHH
Confidence 344444 4699999998777777789999999999888 555332 345677899999887644 777778899
Q ss_pred hcCCCCCccceEEEEecCCC
Q 012004 235 IQGLPEGALRRIILTASGGA 254 (473)
Q Consensus 235 L~g~~~~~v~kiiLTASGGP 254 (473)
|+......++.+.+|..=.|
T Consensus 105 l~a~~ig~~~~V~i~~~k~p 124 (229)
T TIGR03855 105 LKAASLGRIERVVLTTTKPP 124 (229)
T ss_pred HHhcccCCceEEEEEEecCh
Confidence 98766678999999976444
No 77
>PLN02583 cinnamoyl-CoA reductase
Probab=93.47 E-value=0.47 Score=46.96 Aligned_cols=33 Identities=18% Similarity=0.324 Sum_probs=28.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 6 ~k~vlVTGatG~IG~~lv~~Ll~~--G~~V~~~~R 38 (297)
T PLN02583 6 SKSVCVMDASGYVGFWLVKRLLSR--GYTVHAAVQ 38 (297)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhC--CCEEEEEEc
Confidence 468999999999999999988875 689998763
No 78
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=93.46 E-value=0.44 Score=48.03 Aligned_cols=32 Identities=25% Similarity=0.153 Sum_probs=28.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 k~ilItGatG~IG~~l~~~L~~~--G~~V~~~~r 36 (349)
T TIGR02622 5 KKVLVTGHTGFKGSWLSLWLLEL--GAEVYGYSL 36 (349)
T ss_pred CEEEEECCCChhHHHHHHHHHHC--CCEEEEEeC
Confidence 68999999999999999999875 688998863
No 79
>TIGR01851 argC_other N-acetyl-gamma-glutamyl-phosphate reductase, uncommon form. This model represents the less common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and gap architecture in a multiple sequence alignment.
Probab=93.45 E-value=0.22 Score=51.50 Aligned_cols=55 Identities=13% Similarity=0.166 Sum_probs=40.1
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
||+|+|+||..|...++++.+||+ |+++.+++.++.+........-+.+.|+++-
T Consensus 3 ~v~IvGasGy~G~el~rlL~~HP~-~el~~l~s~~~~~~~~~~~~~~~~D~vFlal 57 (310)
T TIGR01851 3 KVFIDGEAGTTGLQIRERLSGRDD-IELLSIAPDRRKDAAERAKLLNAADVAILCL 57 (310)
T ss_pred eEEEECCCChhHHHHHHHHhCCCC-eEEEEEecccccCcCCHhHhhcCCCEEEECC
Confidence 799999999999999999999986 8999999887643211110001356776643
No 80
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=93.39 E-value=0.75 Score=44.05 Aligned_cols=65 Identities=12% Similarity=0.081 Sum_probs=45.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||..+..-+.++ .++|+.+ .+++.+.+.++.++...+...+ .|-.+.+.+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~vv~~-~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (251)
T PRK12481 8 GKVAIITGCNTGLGQGMAIGLAKA--GADIVGV-GVAEAPETQAQVEALGRKFHFITADLIQQKDIDSI 73 (251)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe-cCchHHHHHHHHHHcCCeEEEEEeCCCCHHHHHHH
Confidence 378999999999999999998875 7888765 4455566666777666554433 455555555544
No 81
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=93.39 E-value=0.67 Score=44.04 Aligned_cols=65 Identities=17% Similarity=0.163 Sum_probs=40.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
.|++.|.|+||.||....+-+.+. .++|+.+.-....+.+.++......+...+ .|-.+...+++
T Consensus 8 ~k~vlVtGas~gIG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK12823 8 GKVVVVTGAAQGIGRGVALRAAAE--GARVVLVDRSELVHEVAAELRAAGGEALALTADLETYAGAQA 73 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCchHHHHHHHHHHhcCCeEEEEEEeCCCHHHHHH
Confidence 478999999999999999988875 577876543222334444444444443322 34444444443
No 82
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=93.38 E-value=0.75 Score=43.03 Aligned_cols=82 Identities=20% Similarity=0.167 Sum_probs=50.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCE-EEEeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~--P~~-v~v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|++.|.|+||.||.+..+.+.+. .++|++++ +|-+.+.++..+.. .+. ....|-.+...++..+.
T Consensus 5 ~~~vlItGasg~iG~~l~~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 73 (251)
T PRK07231 5 GKVAIVTGASSGIGEGIARRFAAE--GARVVVTD--RNEEAAERVAAEILAGGRAIAVAADVSDEADVEAAVA------- 73 (251)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH-------
Confidence 368999999999999999998876 57776663 44555555544433 222 22345455555554331
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|.|++..
T Consensus 74 ------~~~~--~~~~~d~vi~~a 89 (251)
T PRK07231 74 ------AALE--RFGSVDILVNNA 89 (251)
T ss_pred ------HHHH--HhCCCCEEEECC
Confidence 1111 234689999875
No 83
>PRK07825 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.89 Score=43.74 Aligned_cols=80 Identities=15% Similarity=0.063 Sum_probs=51.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-CCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-PQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~-P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.|++.|.|+||.||......+.+. .++|+.+ .+|.+.+.+..++.. ..+ ...|-.+.+.+.+.+.
T Consensus 5 ~~~ilVtGasggiG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~~~--------- 70 (273)
T PRK07825 5 GKVVAITGGARGIGLATARALAAL--GARVAIG--DLDEALAKETAAELGLVVG-GPLDVTDPASFAAFLD--------- 70 (273)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--ECCHHHHHHHHHHhccceE-EEccCCCHHHHHHHHH---------
Confidence 368999999999999999988775 5676654 367788777666654 333 2345444444544331
Q ss_pred echhhHHHhhcCCCCCEEEEe
Q 012004 155 AGEQGVIEAARHPDAVTVVTG 175 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~A 175 (473)
.+.+. ....|++|+.
T Consensus 71 ----~~~~~--~~~id~li~~ 85 (273)
T PRK07825 71 ----AVEAD--LGPIDVLVNN 85 (273)
T ss_pred ----HHHHH--cCCCCEEEEC
Confidence 12221 2468999986
No 84
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=93.32 E-value=0.71 Score=43.82 Aligned_cols=82 Identities=18% Similarity=0.123 Sum_probs=50.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~---~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|+|.|.|+||+||....+-+.+. .++|+.+ .+|-+.+.++. ++.+++...+ .|-.+.+.+++.+.
T Consensus 10 ~k~vlItGa~g~iG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~~~------ 79 (255)
T PRK07523 10 GRRALVTGSSQGIGYALAEGLAQA--GAEVILN--GRDPAKLAAAAESLKGQGLSAHALAFDVTDHDAVRAAID------ 79 (255)
T ss_pred CCEEEEECCcchHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCceEEEEEccCCCHHHHHHHHH------
Confidence 378999999999999999988775 6888765 34555544443 3333333332 45455555554432
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|.||+..
T Consensus 80 -------~~~~--~~~~~d~li~~a 95 (255)
T PRK07523 80 -------AFEA--EIGPIDILVNNA 95 (255)
T ss_pred -------HHHH--hcCCCCEEEECC
Confidence 1111 123588888874
No 85
>PRK05717 oxidoreductase; Validated
Probab=93.21 E-value=0.88 Score=43.31 Aligned_cols=62 Identities=11% Similarity=0.050 Sum_probs=40.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE-EeCcccHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~ 142 (473)
|++.|.|+||+||..+..-+.+. .++|+.+. ++.+.+.+.++++..+... -.|-.+...+++
T Consensus 11 k~vlItG~sg~IG~~~a~~l~~~--g~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~ 73 (255)
T PRK05717 11 RVALVTGAARGIGLGIAAWLIAE--GWQVVLAD--LDRERGSKVAKALGENAWFIAMDVADEAQVAA 73 (255)
T ss_pred CEEEEeCCcchHHHHHHHHHHHc--CCEEEEEc--CCHHHHHHHHHHcCCceEEEEccCCCHHHHHH
Confidence 68999999999999999988875 56777653 3455555555555433332 234344444443
No 86
>PRK06057 short chain dehydrogenase; Provisional
Probab=93.19 E-value=0.8 Score=43.58 Aligned_cols=63 Identities=13% Similarity=0.032 Sum_probs=41.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
.|+|.|.|+||.||.+..+-+.++ .++|+.+. +|-+.+.+...+++..+ ...|-.+...++..
T Consensus 7 ~~~vlItGasggIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~-~~~D~~~~~~~~~~ 69 (255)
T PRK06057 7 GRVAVITGGGSGIGLATARRLAAE--GATVVVGD--IDPEAGKAAADEVGGLF-VPTDVTDEDAVNAL 69 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHcCCcE-EEeeCCCHHHHHHH
Confidence 478999999999999999999876 57777664 45555555445554333 33454444444443
No 87
>PRK08265 short chain dehydrogenase; Provisional
Probab=93.16 E-value=0.87 Score=43.78 Aligned_cols=64 Identities=16% Similarity=0.070 Sum_probs=44.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+.++++..+...+ .|-.+.+.+++.
T Consensus 6 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 70 (261)
T PRK08265 6 GKVAIVTGGATLIGAAVARALVAA--GARVAIV--DIDADNGAAVAASLGERARFIATDITDDAAIERA 70 (261)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCeeEEEEecCCCHHHHHHH
Confidence 378999999999999999998875 6777665 356676777777665443332 455555555544
No 88
>PRK08643 acetoin reductase; Validated
Probab=93.16 E-value=0.88 Score=43.14 Aligned_cols=82 Identities=22% Similarity=0.216 Sum_probs=49.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~---f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|.+.|.|+||.||.++...+.++ .++|+.+. ++-+.+.+...+ ...+...+ .|-.+.+.+++.+.
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 71 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVED--GFKVAIVD--YNEETAQAAADKLSKDGGKAIAVKADVSDRDQVFAAVR------ 71 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH------
Confidence 468999999999999999999876 67887765 344444444333 33333333 34444444444321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ...+.|+||+..
T Consensus 72 -------~~~~--~~~~id~vi~~a 87 (256)
T PRK08643 72 -------QVVD--TFGDLNVVVNNA 87 (256)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 124689998864
No 89
>PRK06196 oxidoreductase; Provisional
Probab=93.14 E-value=0.79 Score=45.59 Aligned_cols=63 Identities=14% Similarity=0.177 Sum_probs=41.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
.|+|.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+.+.+..--.+...|-.+...+++
T Consensus 26 ~k~vlITGasggIG~~~a~~L~~~--G~~Vv~~--~R~~~~~~~~~~~l~~v~~~~~Dl~d~~~v~~ 88 (315)
T PRK06196 26 GKTAIVTGGYSGLGLETTRALAQA--GAHVIVP--ARRPDVAREALAGIDGVEVVMLDLADLESVRA 88 (315)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhhhCeEEEccCCCHHHHHH
Confidence 478999999999999999988875 5788764 35667766655554311222344444444444
No 90
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=93.14 E-value=0.12 Score=52.29 Aligned_cols=38 Identities=26% Similarity=0.270 Sum_probs=30.9
Q ss_pred CCCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|-...+|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 10 ~~~~~~~~vlVtGatGfiG~~lv~~L~~~--g~~V~~~d~ 47 (348)
T PRK15181 10 KLVLAPKRWLITGVAGFIGSGLLEELLFL--NQTVIGLDN 47 (348)
T ss_pred cccccCCEEEEECCccHHHHHHHHHHHHC--CCEEEEEeC
Confidence 33344468999999999999999999876 589999864
No 91
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=93.13 E-value=0.23 Score=49.27 Aligned_cols=31 Identities=26% Similarity=0.385 Sum_probs=24.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
+||.|.|+||+||.+..+-+.+.. +|+++.-
T Consensus 1 m~iLVtG~~GfiGs~l~~~L~~~g---~V~~~~~ 31 (299)
T PRK09987 1 MNILLFGKTGQVGWELQRALAPLG---NLIALDV 31 (299)
T ss_pred CeEEEECCCCHHHHHHHHHhhccC---CEEEecc
Confidence 379999999999999988776643 4777753
No 92
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=93.08 E-value=0.57 Score=48.05 Aligned_cols=95 Identities=19% Similarity=0.317 Sum_probs=65.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCccc-HHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~-~~~l~~~l~~~~~~~~v~ 154 (473)
-++|.|.|+||.+|+-++.+.+.. .+.+++.+..+ ++.. .++++..+++.-..+.+ .+.+++.
T Consensus 143 g~~VLV~gaaGgVG~~aiQlAk~~--G~~~v~~~~s~--~k~~-~~~~lGAd~vi~y~~~~~~~~v~~~----------- 206 (326)
T COG0604 143 GETVLVHGAAGGVGSAAIQLAKAL--GATVVAVVSSS--EKLE-LLKELGADHVINYREEDFVEQVREL----------- 206 (326)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCcEEEEecCH--HHHH-HHHhcCCCEEEcCCcccHHHHHHHH-----------
Confidence 468999999999999999999997 44677766554 5555 78999999888644432 3333332
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
.....+|+|++.+ |-.-+...+.+++.+-++.
T Consensus 207 ---------t~g~gvDvv~D~v-G~~~~~~~l~~l~~~G~lv 238 (326)
T COG0604 207 ---------TGGKGVDVVLDTV-GGDTFAASLAALAPGGRLV 238 (326)
T ss_pred ---------cCCCCceEEEECC-CHHHHHHHHHHhccCCEEE
Confidence 2223578888774 4455666777777765544
No 93
>PRK08628 short chain dehydrogenase; Provisional
Probab=93.07 E-value=0.83 Score=43.35 Aligned_cols=83 Identities=16% Similarity=0.174 Sum_probs=50.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
|++.|.|+||.||......+.+. ..+|+.++-...-..+.+++++...+...+ .|-.+.+.++..+.
T Consensus 8 ~~ilItGasggiG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---------- 75 (258)
T PRK08628 8 KVVIVTGGASGIGAAISLRLAEE--GAIPVIFGRSAPDDEFAEELRALQPRAEFVQVDLTDDAQCRDAVE---------- 75 (258)
T ss_pred CEEEEeCCCChHHHHHHHHHHHc--CCcEEEEcCChhhHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH----------
Confidence 68999999999999999998876 456666543222224445555555554443 44444444444331
Q ss_pred chhhHHHhhcCCCCCEEEEec
Q 012004 156 GEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+|++..
T Consensus 76 ---~~~~--~~~~id~vi~~a 91 (258)
T PRK08628 76 ---QTVA--KFGRIDGLVNNA 91 (258)
T ss_pred ---HHHH--hcCCCCEEEECC
Confidence 1111 223688888774
No 94
>PRK08226 short chain dehydrogenase; Provisional
Probab=93.05 E-value=0.85 Score=43.40 Aligned_cols=66 Identities=20% Similarity=0.211 Sum_probs=41.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE-EEeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV-AVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v-~v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||....+-+.++ .++|+.++-..+.+.+.+..+....+.. ...|-.+...++..
T Consensus 6 ~~~~lItG~s~giG~~la~~l~~~--G~~Vv~~~r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 72 (263)
T PRK08226 6 GKTALITGALQGIGEGIARVFARH--GANLILLDISPEIEKLADELCGRGHRCTAVVADVRDPASVAAA 72 (263)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEecCCHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHH
Confidence 478999999999999999999876 6778766543333333333333333332 23455555555544
No 95
>PRK06500 short chain dehydrogenase; Provisional
Probab=92.99 E-value=1.1 Score=41.98 Aligned_cols=49 Identities=20% Similarity=0.204 Sum_probs=37.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~ 128 (473)
.|++.|.|+||.||....+-+.+. .++|+.+ .+|.+.+.+..+++..+.
T Consensus 6 ~k~vlItGasg~iG~~la~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~ 54 (249)
T PRK06500 6 GKTALITGGTSGIGLETARQFLAE--GARVAIT--GRDPASLEAARAELGESA 54 (249)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEe--cCCHHHHHHHHHHhCCce
Confidence 368999999999999999998876 5677665 456677776666665443
No 96
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=92.93 E-value=0.3 Score=47.13 Aligned_cols=66 Identities=20% Similarity=0.254 Sum_probs=40.6
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEecc---CCHHHHHHHHHhhCCCEE-EEeCcccHHHHHHHHh
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG---SNITLLADQVKRFKPQVV-AVRNESLLDEIKEALA 145 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~---~Nv~~L~~q~~~f~P~~v-~v~de~~~~~l~~~l~ 145 (473)
+|.|.|+||+||...++-+.+....++|+++.-. ++.+.+.+. .. .+... ...|-.+...+++.+.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~-~~~~~~~~~Dl~~~~~~~~~~~ 70 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDKLTYAGNLENLADL-ED-NPRYRFVKGDIGDRELVSRLFT 70 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecCCCcchhhhhhhhh-cc-CCCcEEEEcCCcCHHHHHHHHh
Confidence 5899999999999999988776556889987532 222333221 11 12222 2245555566666654
No 97
>PRK12939 short chain dehydrogenase; Provisional
Probab=92.86 E-value=1.1 Score=41.92 Aligned_cols=82 Identities=11% Similarity=0.033 Sum_probs=51.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCE-EEEeCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQV-VAVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~-v~v~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||....+.+.+. .++|+.+ .++-+.+.+...++ ..+. +...|-.+...+++.+.
T Consensus 7 ~~~vlItGa~g~iG~~la~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 76 (250)
T PRK12939 7 GKRALVTGAARGLGAAFAEALAEA--GATVAFN--DGLAAEARELAAALEAAGGRAHAIAADLADPASVQRFFD------ 76 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHH------
Confidence 378999999999999999999875 5778777 35566555554443 2222 22345555555554331
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+. ...+|.|++..
T Consensus 77 -------~~~~~--~~~id~vi~~a 92 (250)
T PRK12939 77 -------AAAAA--LGGLDGLVNNA 92 (250)
T ss_pred -------HHHHH--cCCCCEEEECC
Confidence 11111 24689998875
No 98
>PRK05693 short chain dehydrogenase; Provisional
Probab=92.80 E-value=1.1 Score=43.16 Aligned_cols=40 Identities=18% Similarity=0.197 Sum_probs=31.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
||++.|.|+||.||.+..+.+.+. .++|++++ +|-+.+.+
T Consensus 1 mk~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 40 (274)
T PRK05693 1 MPVVLITGCSSGIGRALADAFKAA--GYEVWATA--RKAEDVEA 40 (274)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 578999999999999999999875 68888765 34444433
No 99
>PRK07774 short chain dehydrogenase; Provisional
Probab=92.78 E-value=0.97 Score=42.47 Aligned_cols=65 Identities=23% Similarity=0.187 Sum_probs=40.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
|++.|.|+||.||.+...-+.+. .++|+.+.-.. +.+.+.+..++..++... ..|-.+...++..
T Consensus 7 k~vlItGasg~iG~~la~~l~~~--g~~vi~~~r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 73 (250)
T PRK07774 7 KVAIVTGAAGGIGQAYAEALARE--GASVVVADINAEGAERVAKQIVADGGTAIAVQVDVSDPDSAKAM 73 (250)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 68999999999999999998875 67888775321 223333334333334333 3454555555443
No 100
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=92.70 E-value=0.94 Score=42.28 Aligned_cols=83 Identities=13% Similarity=0.112 Sum_probs=50.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEE-EEeCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVV-AVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~---f~P~~v-~v~de~~~~~l~~~l~~~~~~~ 151 (473)
||.+.|.|+||.||.+..+.+.+. .++|+.+. .++.+.+.+...+ ...+.. .-.|-.+.+.+++.+..
T Consensus 1 ~~~~lItGa~g~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~i~~~~~~----- 72 (247)
T PRK09730 1 MAIALVTGGSRGIGRATALLLAQE--GYTVAVNY-QQNLHAAQEVVNLITQAGGKAFVLQADISDENQVVAMFTA----- 72 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHhCCCeEEEEEccCCCHHHHHHHHHH-----
Confidence 478999999999999999998875 67776543 3455554444433 333322 22444444445544321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
+.+ .....|+||+..
T Consensus 73 --------~~~--~~~~id~vi~~a 87 (247)
T PRK09730 73 --------IDQ--HDEPLAALVNNA 87 (247)
T ss_pred --------HHH--hCCCCCEEEECC
Confidence 111 234689999884
No 101
>PRK07201 short chain dehydrogenase; Provisional
Probab=92.69 E-value=0.53 Score=51.31 Aligned_cols=47 Identities=19% Similarity=0.250 Sum_probs=36.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+|.|.|+||+||.+.+.-+.+++..++|++++-......+.++...+
T Consensus 2 ~ILVTGatGfIG~~lv~~Ll~~~~g~~V~~l~R~~~~~~~~~~~~~~ 48 (657)
T PRK07201 2 RYFVTGGTGFIGRRLVSRLLDRRREATVHVLVRRQSLSRLEALAAYW 48 (657)
T ss_pred eEEEeCCccHHHHHHHHHHHhcCCCCEEEEEECcchHHHHHHHHHhc
Confidence 79999999999999999998766789999998655555555544443
No 102
>PRK06180 short chain dehydrogenase; Provisional
Probab=92.68 E-value=1.2 Score=43.14 Aligned_cols=64 Identities=17% Similarity=0.126 Sum_probs=43.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
+|+|.|.|+||.||.....-+.+. .++|+++. +|-+.+.+.......+...+ .|-.+...+.+.
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~--G~~V~~~~--r~~~~~~~l~~~~~~~~~~~~~D~~d~~~~~~~ 68 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAA--GHRVVGTV--RSEAARADFEALHPDRALARLLDVTDFDAIDAV 68 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhC--cCEEEEEe--CCHHHHHHHHhhcCCCeeEEEccCCCHHHHHHH
Confidence 478999999999999999988775 67888764 56676666555554444333 344444444443
No 103
>PRK07454 short chain dehydrogenase; Provisional
Probab=92.63 E-value=1.4 Score=41.28 Aligned_cols=44 Identities=16% Similarity=0.167 Sum_probs=33.1
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~ 122 (473)
.+|++.|.|+||.||....+-+.++ .++|+.++ +|-+.+.+...
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~ 48 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKA--GWDLALVA--RSQDALEALAA 48 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 4689999999999999999998875 56777765 45555444433
No 104
>PRK07035 short chain dehydrogenase; Provisional
Probab=92.61 E-value=1.1 Score=42.46 Aligned_cols=43 Identities=16% Similarity=0.200 Sum_probs=32.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
|++.|.|+||.||.....-+.+. .++|+.+. +|.+.+.++.++
T Consensus 9 k~vlItGas~gIG~~l~~~l~~~--G~~Vi~~~--r~~~~~~~~~~~ 51 (252)
T PRK07035 9 KIALVTGASRGIGEAIAKLLAQQ--GAHVIVSS--RKLDGCQAVADA 51 (252)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 78999999999999999999876 56888775 345544444433
No 105
>PRK06182 short chain dehydrogenase; Validated
Probab=92.61 E-value=1.2 Score=42.93 Aligned_cols=84 Identities=19% Similarity=0.216 Sum_probs=51.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.|++.|.|+||.||....+.+.+. .++|++++ +|.+.+.+... .+..+ ...|-.+.+.+++.+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~--G~~V~~~~--r~~~~l~~~~~-~~~~~-~~~Dv~~~~~~~~~~~---------- 66 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQ--GYTVYGAA--RRVDKMEDLAS-LGVHP-LSLDVTDEASIKAAVD---------- 66 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHh-CCCeE-EEeeCCCHHHHHHHHH----------
Confidence 478999999999999999988764 67888764 56676654432 23222 2244444444443321
Q ss_pred chhhHHHhhcCCCCCEEEEecccccC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAG 181 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aG 181 (473)
.+.+ ....+|+||+. +|...
T Consensus 67 ---~~~~--~~~~id~li~~-ag~~~ 86 (273)
T PRK06182 67 ---TIIA--EEGRIDVLVNN-AGYGS 86 (273)
T ss_pred ---HHHH--hcCCCCEEEEC-CCcCC
Confidence 1111 12468999987 35443
No 106
>CHL00194 ycf39 Ycf39; Provisional
Probab=92.60 E-value=0.57 Score=46.72 Aligned_cols=30 Identities=27% Similarity=0.556 Sum_probs=27.0
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+|.|+|+||+||...++-+.+. .++|.+++
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~--g~~V~~l~ 31 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDE--GYQVRCLV 31 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHC--CCeEEEEE
Confidence 7999999999999999888775 68999986
No 107
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.59 E-value=1.3 Score=41.88 Aligned_cols=32 Identities=19% Similarity=0.151 Sum_probs=27.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+|.+.|.|+||.||.+..+.+.+. .++|+.+.
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~--g~~vi~~~ 33 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAA--GFDLAIND 33 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 478999999999999999999876 57887765
No 108
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=92.58 E-value=0.54 Score=52.09 Aligned_cols=35 Identities=23% Similarity=0.467 Sum_probs=30.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
+|+|.|.|+||+||+..++-+.+....++|+++.-
T Consensus 6 ~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 6 PKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 57899999999999999998887544689998864
No 109
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=92.55 E-value=0.31 Score=49.69 Aligned_cols=49 Identities=14% Similarity=0.250 Sum_probs=39.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
+||+|+|+||.+|..+...+...+-.++|+.+.-..+.++|..+..++.
T Consensus 1 ~kI~IiGatG~vG~~~a~~l~~~g~~~~v~lvd~~~~~~~l~~~~~dl~ 49 (309)
T cd05294 1 MKVSIIGASGRVGSATALLLAKEDVVKEINLISRPKSLEKLKGLRLDIY 49 (309)
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCEEEEEECcccccccccccchhh
Confidence 4799999999999999999988776678888876666677766665543
No 110
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=92.55 E-value=1.3 Score=42.14 Aligned_cols=64 Identities=19% Similarity=0.151 Sum_probs=43.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||......+.++ .++|+.+ .+|.+.+.+...+...+...+ .|-.+...+++.
T Consensus 6 ~~~vlItGas~~iG~~ia~~l~~~--G~~v~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (257)
T PRK07067 6 GKVALLTGAASGIGEAVAERYLAE--GARVVIA--DIKPARARLAALEIGPAAIAVSLDVTRQDSIDRI 70 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHH
Confidence 368999999999999999999886 6777765 356777766666655443332 343344444443
No 111
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=92.54 E-value=1.2 Score=42.55 Aligned_cols=65 Identities=18% Similarity=0.150 Sum_probs=43.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|.+.|.|+||.||.++.+-+.+. .++|+++. .+..+.+.+++++...+...+ .|-.+.+.+++.
T Consensus 10 ~k~~lItG~~~gIG~a~a~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 75 (253)
T PRK08993 10 GKVAVVTGCDTGLGQGMALGLAEA--GCDIVGIN-IVEPTETIEQVTALGRRFLSLTADLRKIDGIPAL 75 (253)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEec-CcchHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 378999999999999999998876 67888764 333455555665555444433 344444445443
No 112
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=92.54 E-value=0.18 Score=51.91 Aligned_cols=33 Identities=15% Similarity=0.167 Sum_probs=29.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
|+|.|+|+||+||..+...+.++ .++|++++-.
T Consensus 22 ~~IlVtGgtGfIG~~l~~~L~~~--G~~V~~v~r~ 54 (370)
T PLN02695 22 LRICITGAGGFIASHIARRLKAE--GHYIIASDWK 54 (370)
T ss_pred CEEEEECCccHHHHHHHHHHHhC--CCEEEEEEec
Confidence 68999999999999999999885 6899998743
No 113
>PRK08589 short chain dehydrogenase; Validated
Probab=92.52 E-value=1 Score=43.75 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=31.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~ 122 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+.- | +.+.+.+.
T Consensus 6 ~k~vlItGas~gIG~aia~~l~~~--G~~vi~~~r--~-~~~~~~~~ 47 (272)
T PRK08589 6 NKVAVITGASTGIGQASAIALAQE--GAYVLAVDI--A-EAVSETVD 47 (272)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeC--c-HHHHHHHH
Confidence 478999999999999999988876 678877643 3 44444333
No 114
>PRK06181 short chain dehydrogenase; Provisional
Probab=92.50 E-value=1.2 Score=42.42 Aligned_cols=39 Identities=28% Similarity=0.266 Sum_probs=29.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
++|.|.|+||.||......+.+. .++|+++. +|.+.+.+
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~--g~~Vi~~~--r~~~~~~~ 40 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARA--GAQLVLAA--RNETRLAS 40 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHH
Confidence 67999999999999999888765 57888875 34444433
No 115
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=92.46 E-value=1.2 Score=42.52 Aligned_cols=63 Identities=17% Similarity=0.214 Sum_probs=41.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE-EeCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~ 142 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|-+.+.+...+...+... ..|-.+...+++
T Consensus 6 ~k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 69 (263)
T PRK06200 6 GQVALITGGGSGIGRALVERFLAE--GARVAVLE--RSAEKLASLRQRFGDHVLVVEGDVTSYADNQR 69 (263)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCcceEEEccCCCHHHHHH
Confidence 378999999999999999999876 57776653 5666666655555433332 244444444443
No 116
>PRK08278 short chain dehydrogenase; Provisional
Probab=92.46 E-value=1.4 Score=42.96 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=41.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC--------HHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--------ITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N--------v~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|++.|.|+||.||.+..+-+.++ .++|+.+.-... .+.+.+++++...+...+ .|-.+.+.+++.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~D~~~~~~i~~~ 80 (273)
T PRK08278 7 KTLFITGASRGIGLAIALRAARD--GANIVIAAKTAEPHPKLPGTIHTAAEEIEAAGGQALPLVGDVRDEDQVAAA 80 (273)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEecccccccchhhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHH
Confidence 78999999999999999999876 567777642211 334445555544444443 454444444443
No 117
>PRK07326 short chain dehydrogenase; Provisional
Probab=92.42 E-value=0.72 Score=43.00 Aligned_cols=81 Identities=11% Similarity=0.197 Sum_probs=51.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCEE-EEeCcccHHHHHHHHhcCCCCcEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQVV-AVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~--P~~v-~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
++|.|.|+||.||.....-+.++ .++|+++. +|-+.+.+..++.. .+.. ...|-.+...+++.+.
T Consensus 7 ~~ilItGatg~iG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~D~~~~~~~~~~~~-------- 74 (237)
T PRK07326 7 KVALITGGSKGIGFAIAEALLAE--GYKVAITA--RDQKELEEAAAELNNKGNVLGLAADVRDEADVQRAVD-------- 74 (237)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEee--CCHHHHHHHHHHHhccCcEEEEEccCCCHHHHHHHHH--------
Confidence 78999999999999999998875 67888774 55566655555443 2222 2245444445554332
Q ss_pred EechhhHHHhhcCCCCCEEEEec
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+|++..
T Consensus 75 -----~~~~--~~~~~d~vi~~a 90 (237)
T PRK07326 75 -----AIVA--AFGGLDVLIANA 90 (237)
T ss_pred -----HHHH--HcCCCCEEEECC
Confidence 1111 123688999874
No 118
>PRK06194 hypothetical protein; Provisional
Probab=92.40 E-value=1.3 Score=42.77 Aligned_cols=64 Identities=17% Similarity=0.184 Sum_probs=41.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v-~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||....+-+.+. .++|+.+. ++.+.+.+...+. +.+...+ .|-.+.+.+++.
T Consensus 6 ~k~vlVtGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~ 73 (287)
T PRK06194 6 GKVAVITGAASGFGLAFARIGAAL--GMKLVLAD--VQQDALDRAVAELRAQGAEVLGVRTDVSDAAQVEAL 73 (287)
T ss_pred CCEEEEeCCccHHHHHHHHHHHHC--CCEEEEEe--CChHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 478999999999999999988876 56776553 4555555554443 3444333 444444455443
No 119
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.29 E-value=1.3 Score=42.66 Aligned_cols=84 Identities=17% Similarity=0.146 Sum_probs=49.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc-CCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~-~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~v 153 (473)
.|++.|.|+||.||.++.+.+.+. .++|+.+.-. .+.+.+.++.+....+..++ .|-.....+.+.+..
T Consensus 10 ~~~vlItGasggIG~~~a~~l~~~--G~~Vi~~~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~------- 80 (263)
T PRK07814 10 DQVAVVTGAGRGLGAAIALAFAEA--GADVLIAARTESQLDEVAEQIRAAGRRAHVVAADLAHPEATAGLAGQ------- 80 (263)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHHHHH-------
Confidence 468999999999999999999875 6788876532 12233444444333333322 444444444443311
Q ss_pred EechhhHHHhhcCCCCCEEEEec
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AI 176 (473)
+.+ ....+|+||+..
T Consensus 81 ------~~~--~~~~id~vi~~A 95 (263)
T PRK07814 81 ------AVE--AFGRLDIVVNNV 95 (263)
T ss_pred ------HHH--HcCCCCEEEECC
Confidence 111 123689999874
No 120
>PRK14874 aspartate-semialdehyde dehydrogenase; Provisional
Probab=92.28 E-value=0.2 Score=51.58 Aligned_cols=38 Identities=26% Similarity=0.440 Sum_probs=32.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHh--CCCceEEEEEeccCCH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~Nv 114 (473)
++||+|+||||.+|...++.+.+ ||. |++++++..++.
T Consensus 1 ~~~V~IvGAtG~vG~~l~~lL~~~~hp~-~~l~~l~s~~~~ 40 (334)
T PRK14874 1 GYNVAVVGATGAVGREMLNILEERNFPV-DKLRLLASARSA 40 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCc-ceEEEEEccccC
Confidence 35899999999999999999998 665 899999766543
No 121
>PRK06138 short chain dehydrogenase; Provisional
Probab=92.27 E-value=1.5 Score=41.10 Aligned_cols=82 Identities=15% Similarity=0.121 Sum_probs=50.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh--CCCEE-EEeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVV-AVRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f--~P~~v-~v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|++.|.|+||.||.+..+-+.+. ..+|+.+. +|.+.+.+...+. +.+.. ...|-.+...+++.+.
T Consensus 5 ~k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------- 73 (252)
T PRK06138 5 GRVAIVTGAGSGIGRATAKLFARE--GARVVVAD--RDAEAAERVAAAIAAGGRAFARQGDVGSAEAVEALVD------- 73 (252)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCeEEEec--CCHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH-------
Confidence 468999999999999999988875 57777664 4555554444443 22222 2245555555554432
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ...++|.|++..
T Consensus 74 ------~i~~--~~~~id~vi~~a 89 (252)
T PRK06138 74 ------FVAA--RWGRLDVLVNNA 89 (252)
T ss_pred ------HHHH--HcCCCCEEEECC
Confidence 1111 124688888864
No 122
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=92.27 E-value=0.67 Score=47.04 Aligned_cols=50 Identities=16% Similarity=0.275 Sum_probs=41.1
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV 128 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~ 128 (473)
.+|++.|-|||+=||...-+.+.++ .|.|+-++ ++.++|.+++++..=++
T Consensus 5 ~~~~~lITGASsGIG~~~A~~lA~~--g~~liLva--R~~~kL~~la~~l~~~~ 54 (265)
T COG0300 5 KGKTALITGASSGIGAELAKQLARR--GYNLILVA--RREDKLEALAKELEDKT 54 (265)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CcHHHHHHHHHHHHHhh
Confidence 4579999999999999999999987 67776554 77899998888876555
No 123
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=92.24 E-value=1.3 Score=41.30 Aligned_cols=82 Identities=16% Similarity=0.046 Sum_probs=49.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|+|.|+|+||.||.....-+.++ .++|++++ +|.+.+.+...++ ..+...+ .|-.+...+++.+.
T Consensus 6 ~~~ilItGasg~iG~~l~~~l~~~--g~~V~~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (251)
T PRK12826 6 GRVALVTGAARGIGRAIAVRLAAD--GAEVIVVD--ICGDDAAATAELVEAAGGKARARQVDVRDRAALKAAVA------ 75 (251)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH------
Confidence 478999999999999998887765 67887764 4444444444333 3333332 34444444444331
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
++.+ ...++|.|++..
T Consensus 76 -------~~~~--~~~~~d~vi~~a 91 (251)
T PRK12826 76 -------AGVE--DFGRLDILVANA 91 (251)
T ss_pred -------HHHH--HhCCCCEEEECC
Confidence 1111 123689998886
No 124
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=92.23 E-value=1.3 Score=42.42 Aligned_cols=45 Identities=18% Similarity=0.219 Sum_probs=33.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|++.|.|+||.||.+..+-+.+. .++|+.+. +|-+.+.+....+
T Consensus 5 ~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~l~~~~ 49 (262)
T TIGR03325 5 GEVVLVTGGASGLGRAIVDRFVAE--GARVAVLD--KSAAGLQELEAAH 49 (262)
T ss_pred CcEEEEECCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHhhc
Confidence 478999999999999999988876 67887653 4556555544433
No 125
>PLN02240 UDP-glucose 4-epimerase
Probab=92.22 E-value=0.64 Score=46.29 Aligned_cols=32 Identities=28% Similarity=0.442 Sum_probs=28.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 5 ~~~vlItGatG~iG~~l~~~L~~~--g~~V~~~~ 36 (352)
T PLN02240 5 GRTILVTGGAGYIGSHTVLQLLLA--GYKVVVID 36 (352)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998875 57899886
No 126
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=92.18 E-value=0.32 Score=49.78 Aligned_cols=50 Identities=22% Similarity=0.435 Sum_probs=42.8
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccC----CHHHHHHHHHhhCCCEEEE
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----NITLLADQVKRFKPQVVAV 131 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~----Nv~~L~~q~~~f~P~~v~v 131 (473)
|.|+|+||-.|+.-.+.+. ..|+|++++-.+ |.+.+.+.+++.+|+.|.=
T Consensus 3 iLi~G~~GqLG~~L~~~l~---~~~~v~a~~~~~~Ditd~~~v~~~i~~~~PDvVIn 56 (281)
T COG1091 3 ILITGANGQLGTELRRALP---GEFEVIATDRAELDITDPDAVLEVIRETRPDVVIN 56 (281)
T ss_pred EEEEcCCChHHHHHHHHhC---CCceEEeccCccccccChHHHHHHHHhhCCCEEEE
Confidence 9999999999998776665 679999998664 6788999999999998873
No 127
>PRK06949 short chain dehydrogenase; Provisional
Probab=92.09 E-value=2.1 Score=40.40 Aligned_cols=64 Identities=19% Similarity=0.219 Sum_probs=40.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCE-EEEeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQV-VAVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~-v~v~de~~~~~l~~~ 143 (473)
.|+|.|.|+||.||.+..+-+.+. .++|+++. +|-+.+.+...++ ..+. +...|-.....+++.
T Consensus 9 ~k~ilItGasg~IG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~ 76 (258)
T PRK06949 9 GKVALVTGASSGLGARFAQVLAQA--GAKVVLAS--RRVERLKELRAEIEAEGGAAHVVSLDVTDYQSIKAA 76 (258)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHH
Confidence 489999999999999999999875 67877664 3455544433332 2222 333454444445443
No 128
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=92.08 E-value=1.4 Score=41.09 Aligned_cols=65 Identities=20% Similarity=0.236 Sum_probs=40.0
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEEEE-eCcccHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~---f~P~~v~v-~de~~~~~l~~ 142 (473)
++|+|.|.|+||.||.....-+.+. .++|+.+. .++-+.+.+...+ ...+...+ .|-.+...++.
T Consensus 4 ~~~~ilI~Gasg~iG~~la~~l~~~--g~~v~~~~-~r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~ 72 (247)
T PRK05565 4 MGKVAIVTGASGGIGRAIAELLAKE--GAKVVIAY-DINEEAAQELLEEIKEEGGDAIAVKADVSSEEDVEN 72 (247)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHH
Confidence 4578999999999999999888765 67887662 2344444444333 23333222 44444444444
No 129
>PRK06598 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=92.07 E-value=0.28 Score=51.85 Aligned_cols=33 Identities=24% Similarity=0.445 Sum_probs=26.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE---EEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR---VVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~---VvaLa 109 (473)
|.+|+|+||||.+|...++.+.+||+ |. ++.++
T Consensus 1 m~~VAIVGATG~vG~ell~llL~~~~-f~~~~l~~~s 36 (369)
T PRK06598 1 MKKVGFVGWRGMVGSVLMQRMVEEND-FDLIEPVFFS 36 (369)
T ss_pred CeEEEEEeCCCHHHHHHHHHHHhCCC-CCcCcEEEec
Confidence 36899999999999999997777774 76 55544
No 130
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=92.04 E-value=1.1 Score=45.23 Aligned_cols=135 Identities=17% Similarity=0.255 Sum_probs=86.4
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEech
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (473)
+|+|.|+ |-||++.++.++..|-+|+.+++ +.++-++..+..+-+.++.+ +
T Consensus 2 ~vgiVGc-GaIG~~l~e~v~~~~~~~e~v~v-~D~~~ek~~~~~~~~~~~~~--s------------------------- 52 (255)
T COG1712 2 KVGIVGC-GAIGKFLLELVRDGRVDFELVAV-YDRDEEKAKELEASVGRRCV--S------------------------- 52 (255)
T ss_pred eEEEEec-cHHHHHHHHHHhcCCcceeEEEE-ecCCHHHHHHHHhhcCCCcc--c-------------------------
Confidence 5888886 78999999999998889999875 46678888777777766544 1
Q ss_pred hhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeecccc--------chHHHhhcCCeEeecccchh
Q 012004 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPF--------VLPLAHKHNIKILPADSEHS 229 (473)
Q Consensus 158 egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~l--------i~~~a~~~~~~IlPVDSEHs 229 (473)
.+.++. .++|+||.|-+==|=..-...++++|+++... +=|.| +..+|+.++.++.=.-----
T Consensus 53 -~ide~~--~~~DlvVEaAS~~Av~e~~~~~L~~g~d~iV~------SVGALad~~l~erl~~lak~~~~rv~~pSGAiG 123 (255)
T COG1712 53 -DIDELI--AEVDLVVEAASPEAVREYVPKILKAGIDVIVM------SVGALADEGLRERLRELAKCGGARVYLPSGAIG 123 (255)
T ss_pred -cHHHHh--hccceeeeeCCHHHHHHHhHHHHhcCCCEEEE------echhccChHHHHHHHHHHhcCCcEEEecCccch
Confidence 122333 46888888766666666677788888877433 22433 24577777776642111000
Q ss_pred hHHHhhcCCCCCccceEEEEec
Q 012004 230 AIFQCIQGLPEGALRRIILTAS 251 (473)
Q Consensus 230 AIfQcL~g~~~~~v~kiiLTAS 251 (473)
+| ..|..-.-..|+.+.||.-
T Consensus 124 Gl-D~l~aar~g~i~~V~lttr 144 (255)
T COG1712 124 GL-DALAAARVGGIEEVVLTTR 144 (255)
T ss_pred hH-HHHHHhhcCCeeEEEEEee
Confidence 10 1122122356889999863
No 131
>PLN02383 aspartate semialdehyde dehydrogenase
Probab=92.01 E-value=0.23 Score=51.66 Aligned_cols=41 Identities=17% Similarity=0.352 Sum_probs=34.4
Q ss_pred CCeeEEEEccCChHhHHHHHHHHh--CCCceEEEEEeccCCHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITL 116 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~Nv~~ 116 (473)
.+.||+|+|+||.+|...++++.+ ||. ++++.|+..++..+
T Consensus 6 ~~~kVaVvGAtG~vG~eLlrlL~~~~hP~-~~l~~las~rsaGk 48 (344)
T PLN02383 6 NGPSVAIVGVTGAVGQEFLSVLTDRDFPY-SSLKMLASARSAGK 48 (344)
T ss_pred CCCeEEEEcCCChHHHHHHHHHHhCCCCc-ceEEEEEccCCCCC
Confidence 345899999999999999999998 776 88988887766543
No 132
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=92.00 E-value=1.8 Score=40.29 Aligned_cols=64 Identities=22% Similarity=0.239 Sum_probs=41.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.+..+-+.++ .+.|+. . .++.+.+.++..+...+... ..|-.+.+.+++.
T Consensus 6 ~~~vlItGa~g~iG~~la~~l~~~--g~~v~~-~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 70 (245)
T PRK12936 6 GRKALVTGASGGIGEEIARLLHAQ--GAIVGL-H-GTRVEKLEALAAELGERVKIFPANLSDRDEVKAL 70 (245)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEE-E-cCCHHHHHHHHHHhCCceEEEEccCCCHHHHHHH
Confidence 478999999999999999888775 455543 3 35677777766655433322 2344444444443
No 133
>PRK09291 short chain dehydrogenase; Provisional
Probab=92.00 E-value=0.62 Score=43.95 Aligned_cols=50 Identities=20% Similarity=0.191 Sum_probs=34.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc-CCHHHHHHHHHhhCCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQ 127 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~-~Nv~~L~~q~~~f~P~ 127 (473)
+|+|.|.|+||.||.....-+.+. .++|++++-. .+.+.+.+.++...++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~ 52 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARK--GHNVIAGVQIAPQVTALRAEAARRGLA 52 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCc
Confidence 468999999999999999998876 5788876521 1233444444444444
No 134
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=91.97 E-value=1.4 Score=45.82 Aligned_cols=109 Identities=21% Similarity=0.198 Sum_probs=66.3
Q ss_pred eEEEEccCChHhHHHHHHHHhCC--CceEEEEEeccCCHHHHHHHHH------hhCCCEEEEeCcccHHHHHHHHhcCCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEE 149 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~p--d~f~VvaLaa~~Nv~~L~~q~~------~f~P~~v~v~de~~~~~l~~~l~~~~~ 149 (473)
||+|.|. |=||+..++++.+.+ ++|+|+++---...+-++-+.+ +|+- -|...+.. +.-.+.
T Consensus 1 ~IaInGf-GrIGR~vlr~l~e~~~~~~~~vvaInd~~~~~~~ayll~yDS~hg~~~~-~v~~~~~~--------l~v~g~ 70 (325)
T TIGR01532 1 RVAINGF-GRIGRNVLRALYESGERLGIEVVALNELADQASMAHLLRYDTSHGRFPG-EVKVDGDC--------LHVNGD 70 (325)
T ss_pred CEEEECC-CHHHHHHHHHHHhcCCCCCeEEEEEecCCCHHHHHHHHhhCccCCCCCC-cEEEeCCE--------EEECCe
Confidence 6999999 999999999988765 5799999976555555554433 1211 11111110 000011
Q ss_pred CcEEEechhhHHHhh-cCCCCCEEEEecccccCcHHHHHHHHcC-Ccccc
Q 012004 150 KPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (473)
Q Consensus 150 ~~~v~~G~egl~~la-~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G-K~IaL 197 (473)
.++++.- ....++- ...++|+|+.+.-.+.-..-...++++| |.|-+
T Consensus 71 ~i~v~~~-~~p~~~~w~~~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~ 119 (325)
T TIGR01532 71 CIRVLHS-PTPEALPWRALGVDLVLDCTGVYGNREQGERHIRAGAKRVLF 119 (325)
T ss_pred EEEEEEc-CChhhccccccCCCEEEEccchhccHHHHHHHHHcCCeEEEe
Confidence 2333322 2223322 2347999999988887788888899999 44443
No 135
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=91.90 E-value=0.21 Score=50.15 Aligned_cols=33 Identities=24% Similarity=0.398 Sum_probs=28.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
|++|.|+|+||+||.....-+.+.. .++|+++.
T Consensus 1 m~~ilVtGatGfiGs~l~~~L~~~~-~~~V~~~~ 33 (347)
T PRK11908 1 MKKVLILGVNGFIGHHLSKRILETT-DWEVYGMD 33 (347)
T ss_pred CcEEEEECCCcHHHHHHHHHHHhCC-CCeEEEEe
Confidence 4689999999999999999887642 48999986
No 136
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=91.87 E-value=1.6 Score=41.11 Aligned_cols=85 Identities=19% Similarity=0.181 Sum_probs=51.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~---~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||....+-+.++ .++|+.+ ..++-+.+.++. ++..++...+ .|-.+...+.+.+..
T Consensus 6 ~~~~lItG~s~~iG~~la~~l~~~--g~~v~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~----- 77 (247)
T PRK12935 6 GKVAIVTGGAKGIGKAITVALAQE--GAKVVIN-YNSSKEAAENLVNELGKEGHDVYAVQADVSKVEDANRLVEE----- 77 (247)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCEEEEE-cCCcHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHHH-----
Confidence 478999999999999999988876 5677754 344444444433 3333444333 444444455544321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEecccc
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGIVGC 179 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AIvG~ 179 (473)
+.+ ....+|.|+.. +|.
T Consensus 78 --------~~~--~~~~id~vi~~-ag~ 94 (247)
T PRK12935 78 --------AVN--HFGKVDILVNN-AGI 94 (247)
T ss_pred --------HHH--HcCCCCEEEEC-CCC
Confidence 111 12468999877 444
No 137
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=91.84 E-value=1.2 Score=45.55 Aligned_cols=139 Identities=17% Similarity=0.162 Sum_probs=81.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhC-CCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~-pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.+||+|+|. |.||+...+-+.+- .+.|+++++ ..++.+...+.+.. ++ ++
T Consensus 2 ~~rvgiIG~-GaIG~~va~~l~~~~~~~~~l~~V-~~~~~~~~~~~~~~--~~-------------------------~~ 52 (267)
T PRK13301 2 THRIAFIGL-GAIASDVAAGLLADAAQPCQLAAL-TRNAADLPPALAGR--VA-------------------------LL 52 (267)
T ss_pred ceEEEEECc-cHHHHHHHHHHhcCCCCceEEEEE-ecCCHHHHHHhhcc--Cc-------------------------cc
Confidence 579999997 89999988877663 456999998 45555443333222 11 11
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc------ccccceeeeccccchHHHhhcCCeEeecccch
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA------LANKETLIAGGPFVLPLAHKHNIKILPADSEH 228 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia------LANKESLV~aG~li~~~a~~~~~~IlPVDSEH 228 (473)
+.+.++.. .++|+||.+-+=-+=-.-....+++|+++. ||+++. =.-+.+.|+++|.+|+-- .
T Consensus 53 ---~~l~~ll~-~~~DlVVE~A~~~av~e~~~~iL~~g~dlvv~SvGALaD~~~----~~~l~~~A~~~g~~i~ip---S 121 (267)
T PRK13301 53 ---DGLPGLLA-WRPDLVVEAAGQQAIAEHAEGCLTAGLDMIICSAGALADDAL----RARLIAAAEAGGARIRVP---A 121 (267)
T ss_pred ---CCHHHHhh-cCCCEEEECCCHHHHHHHHHHHHhcCCCEEEEChhHhcCHHH----HHHHHHHHHhCCCEEEEe---C
Confidence 11333332 357888877544333344556667777763 333322 122455777777776642 3
Q ss_pred hhHH--HhhcCCCCCccceEEEEecCCC
Q 012004 229 SAIF--QCIQGLPEGALRRIILTASGGA 254 (473)
Q Consensus 229 sAIf--QcL~g~~~~~v~kiiLTASGGP 254 (473)
-||+ +.|+.-....+.++.+|---.|
T Consensus 122 GAigGlD~l~aa~~~~~~~v~~~t~K~P 149 (267)
T PRK13301 122 GAIAGLDYLQAVAGRDDAEVVYESRKPV 149 (267)
T ss_pred hHHHhHHHHHHhhccCceEEEEEEecCh
Confidence 4553 5555433456778888876665
No 138
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=91.84 E-value=1.2 Score=43.79 Aligned_cols=39 Identities=26% Similarity=0.444 Sum_probs=31.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
+||+|+|+||-+|+--++=..+. ..+|+|++ +|-.++.+
T Consensus 1 mKIaiIgAsG~~Gs~i~~EA~~R--GHeVTAiv--Rn~~K~~~ 39 (211)
T COG2910 1 MKIAIIGASGKAGSRILKEALKR--GHEVTAIV--RNASKLAA 39 (211)
T ss_pred CeEEEEecCchhHHHHHHHHHhC--CCeeEEEE--eChHhccc
Confidence 47999999999999998877654 78999988 66677643
No 139
>PRK09135 pteridine reductase; Provisional
Probab=91.83 E-value=1.6 Score=40.72 Aligned_cols=41 Identities=15% Similarity=0.127 Sum_probs=31.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
++|.|.|+||+||.+..+-+.++ .++|+++. +++.+.+.+.
T Consensus 7 ~~vlItGa~g~iG~~l~~~l~~~--g~~v~~~~-r~~~~~~~~~ 47 (249)
T PRK09135 7 KVALITGGARRIGAAIARTLHAA--GYRVAIHY-HRSAAEADAL 47 (249)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHH
Confidence 68999999999999999998876 68888775 4333444333
No 140
>PRK09134 short chain dehydrogenase; Provisional
Probab=91.77 E-value=1.4 Score=42.01 Aligned_cols=83 Identities=19% Similarity=0.194 Sum_probs=50.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCEEE-EeCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVA-VRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~---L~~q~~~f~P~~v~-v~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||....+.+.++ .++|+.+.. ++-+. +.+++++-..+... ..|-.+...+.+.+.
T Consensus 9 ~k~vlItGas~giG~~la~~l~~~--g~~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------ 79 (258)
T PRK09134 9 PRAALVTGAARRIGRAIALDLAAH--GFDVAVHYN-RSRDEAEALAAEIRALGRRAVALQADLADEAEVRALVA------ 79 (258)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH------
Confidence 368999999999999999999876 567776543 34333 34444333333322 345555555554432
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|+||+..
T Consensus 80 -------~~~~--~~~~iD~vi~~a 95 (258)
T PRK09134 80 -------RASA--ALGPITLLVNNA 95 (258)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 123689999875
No 141
>PRK07102 short chain dehydrogenase; Provisional
Probab=91.74 E-value=0.97 Score=42.60 Aligned_cols=42 Identities=21% Similarity=0.211 Sum_probs=32.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
||++.|.|+||.||..+..-+.+. .++|+++. ++.+.+.+.+
T Consensus 1 ~~~vlItGas~giG~~~a~~l~~~--G~~Vi~~~--r~~~~~~~~~ 42 (243)
T PRK07102 1 MKKILIIGATSDIARACARRYAAA--GARLYLAA--RDVERLERLA 42 (243)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEe--CCHHHHHHHH
Confidence 578999999999999999998875 67787764 4455554433
No 142
>PRK06924 short chain dehydrogenase; Provisional
Probab=91.71 E-value=0.88 Score=42.89 Aligned_cols=65 Identities=9% Similarity=0.212 Sum_probs=41.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
||++.|.|+||.||.+..+-+.++ .++|+.++ ++..+.+.+...+...+... ..|-.+.+.+++.
T Consensus 1 ~k~vlItGasggiG~~ia~~l~~~--g~~V~~~~-r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 66 (251)
T PRK06924 1 MRYVIITGTSQGLGEAIANQLLEK--GTHVISIS-RTENKELTKLAEQYNSNLTFHSLDLQDVHELETN 66 (251)
T ss_pred CcEEEEecCCchHHHHHHHHHHhc--CCEEEEEe-CCchHHHHHHHhccCCceEEEEecCCCHHHHHHH
Confidence 578999999999999999888775 57887764 33334455444444444322 3444444444443
No 143
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=91.70 E-value=0.47 Score=52.56 Aligned_cols=52 Identities=17% Similarity=0.190 Sum_probs=40.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEE-EEEeccCCHHHHHHHHHhhCCCEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRV-VALAAGSNITLLADQVKRFKPQVVA 130 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~V-vaLaa~~Nv~~L~~q~~~f~P~~v~ 130 (473)
+||.|.|+||+||+...+.+.+. .++| ++..--++.+.+.+.+.+++|++|.
T Consensus 381 mkiLVtGa~G~iG~~l~~~L~~~--g~~v~~~~~~l~d~~~v~~~i~~~~pd~Vi 433 (668)
T PLN02260 381 LKFLIYGRTGWIGGLLGKLCEKQ--GIAYEYGKGRLEDRSSLLADIRNVKPTHVF 433 (668)
T ss_pred ceEEEECCCchHHHHHHHHHHhC--CCeEEeeccccccHHHHHHHHHhhCCCEEE
Confidence 47999999999999999988765 4666 3332235667777778888999876
No 144
>PLN02427 UDP-apiose/xylose synthase
Probab=91.70 E-value=0.27 Score=50.26 Aligned_cols=38 Identities=24% Similarity=0.347 Sum_probs=30.7
Q ss_pred CCCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.+...++||.|.|+||+||.+.++-+.+. ..++|+++.
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~-~g~~V~~l~ 46 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTE-TPHKVLALD 46 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhc-CCCEEEEEe
Confidence 34456678999999999999999988764 247899986
No 145
>PRK05671 aspartate-semialdehyde dehydrogenase; Reviewed
Probab=91.70 E-value=0.27 Score=51.11 Aligned_cols=38 Identities=26% Similarity=0.445 Sum_probs=31.6
Q ss_pred CeeEEEEccCChHhHHHHHHHH--hCCCceEEEEEeccCCH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVA--EHEDKFRVVALAAGSNI 114 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~--~~pd~f~VvaLaa~~Nv 114 (473)
|.+|+|+||||.+|...++++. .||. ++++.++..+..
T Consensus 4 ~~~IaIvGATG~vG~eLlrlL~~~~hP~-~~l~~v~s~~~a 43 (336)
T PRK05671 4 PLDIAVVGATGTVGEALVQILEERDFPV-GTLHLLASSESA 43 (336)
T ss_pred CCEEEEEccCCHHHHHHHHHHhhCCCCc-eEEEEEECcccC
Confidence 3689999999999999999999 6776 788888765443
No 146
>PRK12744 short chain dehydrogenase; Provisional
Probab=91.69 E-value=1.9 Score=41.04 Aligned_cols=83 Identities=12% Similarity=0.127 Sum_probs=49.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc--CCHH---HHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNIT---LLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEK 150 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--~Nv~---~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~ 150 (473)
|++.|.|+||.||..+.+.+.+. .++|+.+... ++.+ .+.++.+.+..+...+ .|-.+.+.+++.+.
T Consensus 9 k~vlItGa~~gIG~~~a~~l~~~--G~~vv~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~----- 81 (257)
T PRK12744 9 KVVLIAGGAKNLGGLIARDLAAQ--GAKAVAIHYNSAASKADAEETVAAVKAAGAKAVAFQADLTTAAAVEKLFD----- 81 (257)
T ss_pred cEEEEECCCchHHHHHHHHHHHC--CCcEEEEecCCccchHHHHHHHHHHHHhCCcEEEEecCcCCHHHHHHHHH-----
Confidence 78999999999999999999875 5676666532 2333 3333344444444332 44444444444332
Q ss_pred cEEEechhhHHHhhcCCCCCEEEEec
Q 012004 151 PEILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 151 ~~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|++|+..
T Consensus 82 --------~~~~--~~~~id~li~~a 97 (257)
T PRK12744 82 --------DAKA--AFGRPDIAINTV 97 (257)
T ss_pred --------HHHH--hhCCCCEEEECC
Confidence 1111 124689998875
No 147
>PRK09072 short chain dehydrogenase; Provisional
Probab=91.69 E-value=2 Score=41.06 Aligned_cols=84 Identities=18% Similarity=0.209 Sum_probs=50.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh--hCCCEEEE-eCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR--FKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~--f~P~~v~v-~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|++.|.|+||.||.....-+.+. .++|++++ +|.+.+.+...+ ...+...+ .|-.+...+++...
T Consensus 5 ~~~vlItG~s~~iG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~------- 73 (263)
T PRK09072 5 DKRVLLTGASGGIGQALAEALAAA--GARLLLVG--RNAEKLEALAARLPYPGRHRWVVADLTSEAGREAVLA------- 73 (263)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHHHH-------
Confidence 368999999999999999988875 67888775 455555444333 22222222 34444444443321
Q ss_pred EEechhhHHHhhcCCCCCEEEEeccccc
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGIVGCA 180 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AIvG~a 180 (473)
.+.+ ...+|.||+. +|..
T Consensus 74 ------~~~~---~~~id~lv~~-ag~~ 91 (263)
T PRK09072 74 ------RARE---MGGINVLINN-AGVN 91 (263)
T ss_pred ------HHHh---cCCCCEEEEC-CCCC
Confidence 1111 3468999987 4543
No 148
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=91.66 E-value=1.3 Score=44.50 Aligned_cols=95 Identities=11% Similarity=0.030 Sum_probs=61.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.|+ |+||..++.+.+.. .. +|++... +-+++ +.++++..+.+.-.++.. +.+..
T Consensus 170 g~~VlV~G~-G~vG~~aiqlak~~--G~~~Vi~~~~--~~~~~-~~a~~lGa~~vi~~~~~~---~~~~~---------- 230 (343)
T PRK09880 170 GKRVFVSGV-GPIGCLIVAAVKTL--GAAEIVCADV--SPRSL-SLAREMGADKLVNPQNDD---LDHYK---------- 230 (343)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCcEEEEEeC--CHHHH-HHHHHcCCcEEecCCccc---HHHHh----------
Confidence 368999996 99999999999886 45 4655543 33443 577888887765333222 11110
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccccc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLA 198 (473)
+ ....+|+|++++-+-..+...+.+++.|-++.+.
T Consensus 231 -------~--~~g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~ 265 (343)
T PRK09880 231 -------A--EKGYFDVSFEVSGHPSSINTCLEVTRAKGVMVQV 265 (343)
T ss_pred -------c--cCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEE
Confidence 0 0124899999965446777788888877765543
No 149
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=91.63 E-value=0.55 Score=47.11 Aligned_cols=68 Identities=15% Similarity=0.172 Sum_probs=42.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC---HHHHHHHHHh----hCCCEEE-EeCcccHHHHHHHHhc
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKR----FKPQVVA-VRNESLLDEIKEALAN 146 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N---v~~L~~q~~~----f~P~~v~-v~de~~~~~l~~~l~~ 146 (473)
|+|.|.|+||+||....+-+.+. .++|+++.-... .+.+.+...+ +++.... ..|-.+...+.+.+..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~l~~~~~~ 76 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEK--GYEVHGLIRRSSSFNTQRIEHIYEDPHNVNKARMKLHYGDLTDSSNLRRIIDE 76 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHC--CCEEEEEecCCcccchhhhhhhhhccccccccceeEEEeccCCHHHHHHHHHh
Confidence 68999999999999999988775 688998863321 2333322211 1222222 3455556667776653
No 150
>PRK07890 short chain dehydrogenase; Provisional
Probab=91.62 E-value=1.4 Score=41.65 Aligned_cols=44 Identities=20% Similarity=0.118 Sum_probs=31.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
.|+|.|.|+||.||.++..-+.+. .++|+.+. +|-+.+.+...+
T Consensus 5 ~k~vlItGa~~~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 48 (258)
T PRK07890 5 GKVVVVSGVGPGLGRTLAVRAARA--GADVVLAA--RTAERLDEVAAE 48 (258)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHH
Confidence 478999999999999999988876 56777654 344444443333
No 151
>PRK06128 oxidoreductase; Provisional
Probab=91.60 E-value=1.7 Score=43.01 Aligned_cols=65 Identities=11% Similarity=0.041 Sum_probs=41.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC---CHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---NITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~---Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|++.|.|+||.||....+.+.+. .++|+...-.. +.+.+.+.++....+...+ .|-.+...+++.
T Consensus 56 k~vlITGas~gIG~~~a~~l~~~--G~~V~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~v~~~ 124 (300)
T PRK06128 56 RKALITGADSGIGRATAIAFARE--GADIALNYLPEEEQDAAEVVQLIQAEGRKAVALPGDLKDEAFCRQL 124 (300)
T ss_pred CEEEEecCCCcHHHHHHHHHHHc--CCEEEEEeCCcchHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHH
Confidence 78999999999999999999876 66776543222 2344555555555554443 454444445443
No 152
>PRK06483 dihydromonapterin reductase; Provisional
Probab=91.56 E-value=1.8 Score=40.67 Aligned_cols=63 Identities=17% Similarity=0.082 Sum_probs=40.6
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
++|++.|.|+||.||..+..-+.+. .++|+.+. +|-+.+.+..++.+.. ..-.|-.+...+++
T Consensus 1 ~~k~vlItGas~gIG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~-~~~~D~~~~~~~~~ 63 (236)
T PRK06483 1 MPAPILITGAGQRIGLALAWHLLAQ--GQPVIVSY--RTHYPAIDGLRQAGAQ-CIQADFSTNAGIMA 63 (236)
T ss_pred CCceEEEECCCChHHHHHHHHHHHC--CCeEEEEe--CCchhHHHHHHHcCCE-EEEcCCCCHHHHHH
Confidence 3578999999999999999988875 67888764 3334444555544422 22344444444444
No 153
>PRK05867 short chain dehydrogenase; Provisional
Probab=91.46 E-value=1.5 Score=41.75 Aligned_cols=62 Identities=18% Similarity=0.203 Sum_probs=40.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-eCcccHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v-~de~~~~~l~~ 142 (473)
|++.|.|+||.||..+..-+.+. .++|+.+ .+|.+.+.+.+.+. ..+...+ .|-.+...+++
T Consensus 10 k~vlVtGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 75 (253)
T PRK05867 10 KRALITGASTGIGKRVALAYVEA--GAQVAIA--ARHLDALEKLADEIGTSGGKVVPVCCDVSQHQQVTS 75 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 68999999999999999999876 6777665 34555555544443 3343332 44444444444
No 154
>KOG1502 consensus Flavonol reductase/cinnamoyl-CoA reductase [Defense mechanisms]
Probab=91.45 E-value=0.48 Score=49.50 Aligned_cols=68 Identities=12% Similarity=0.186 Sum_probs=46.0
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC----CCEEEEeCcccHHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK----PQVVAVRNESLLDEIKEAL 144 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~----P~~v~v~de~~~~~l~~~l 144 (473)
+.++|+|.||||+||.--++.+-+. .|+|.|..=...-++-.+-.++++ .-.++.+|-.++..+++++
T Consensus 5 ~~~~VcVTGAsGfIgswivk~LL~r--GY~V~gtVR~~~~~k~~~~L~~l~~a~~~l~l~~aDL~d~~sf~~ai 76 (327)
T KOG1502|consen 5 EGKKVCVTGASGFIGSWIVKLLLSR--GYTVRGTVRDPEDEKKTEHLRKLEGAKERLKLFKADLLDEGSFDKAI 76 (327)
T ss_pred CCcEEEEeCCchHHHHHHHHHHHhC--CCEEEEEEcCcchhhhHHHHHhcccCcccceEEeccccccchHHHHH
Confidence 5689999999999999999998876 999999774332233333344443 2344455655556666654
No 155
>COG0702 Predicted nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=91.37 E-value=0.75 Score=43.53 Aligned_cols=41 Identities=24% Similarity=0.208 Sum_probs=33.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
++|.|+|+||.||+.+++-+.+. .++|++++ +|-+.+....
T Consensus 1 ~~ilV~GatG~~G~~~~~~L~~~--~~~v~~~~--r~~~~~~~~~ 41 (275)
T COG0702 1 MKILVTGATGFVGGAVVRELLAR--GHEVRAAV--RNPEAAAALA 41 (275)
T ss_pred CeEEEEecccchHHHHHHHHHhC--CCEEEEEE--eCHHHHHhhc
Confidence 37999999999999999999887 78888776 6666665544
No 156
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=91.27 E-value=0.55 Score=47.02 Aligned_cols=33 Identities=18% Similarity=0.325 Sum_probs=26.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
||+|.|.|+||+||.....-+.+. .++++.+..
T Consensus 1 ~~~vlVtGatGfIG~~l~~~L~~~--g~~~v~~~~ 33 (355)
T PRK10217 1 MRKILITGGAGFIGSALVRYIINE--TSDAVVVVD 33 (355)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHHc--CCCEEEEEe
Confidence 578999999999999999998864 455555543
No 157
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=91.22 E-value=2.4 Score=42.21 Aligned_cols=46 Identities=11% Similarity=0.282 Sum_probs=34.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
..|++.|.|+||.||..+...+.+. .++|+.+. +|.+.+.+.+.+.
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~--G~~V~~~~--r~~~~~~~~~~~l 50 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKR--GWHVIMAC--RNLKKAEAAAQEL 50 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHh
Confidence 3578999999999999999998876 47777653 5666665555544
No 158
>PRK06172 short chain dehydrogenase; Provisional
Probab=91.21 E-value=1.8 Score=40.98 Aligned_cols=63 Identities=19% Similarity=0.136 Sum_probs=39.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH---HHHHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL---LADQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~---L~~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|-+. +.++.++...+...+ .|-.+...+.+
T Consensus 7 ~k~ilItGas~~iG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~i~~ 73 (253)
T PRK06172 7 GKVALVTGGAAGIGRATALAFARE--GAKVVVAD--RDAAGGEETVALIREAGGEALFVACDVTRDAEVKA 73 (253)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 479999999999999999988875 56777653 33333 444445554443333 34444444444
No 159
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.15 E-value=1.4 Score=41.42 Aligned_cols=65 Identities=12% Similarity=0.176 Sum_probs=43.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEAL 144 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~l 144 (473)
|++.|.|+||.||..+.+-+.+. .++|+.+. .++.+.+.+...++..+..++ .|-.+...+++.+
T Consensus 6 k~ilItGas~gIG~~la~~l~~~--G~~vv~~~-~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 71 (253)
T PRK08642 6 QTVLVTGGSRGLGAAIARAFARE--GARVVVNY-HQSEDAAEALADELGDRAIALQADVTDREQVQAMF 71 (253)
T ss_pred CEEEEeCCCCcHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHHHHhCCceEEEEcCCCCHHHHHHHH
Confidence 68999999999999999988775 57787544 444555555556565444333 4544444555443
No 160
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=91.12 E-value=1.6 Score=48.91 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=34.4
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~ 122 (473)
...|.|.|+|+||.||....+-+.+. .++|+++. +|.+.+.+...
T Consensus 78 ~~gKvVLVTGATGgIG~aLAr~LLk~--G~~Vval~--Rn~ekl~~l~~ 122 (576)
T PLN03209 78 KDEDLAFVAGATGKVGSRTVRELLKL--GFRVRAGV--RSAQRAESLVQ 122 (576)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHH
Confidence 34478999999999999999888765 68888774 56666654443
No 161
>PRK08017 oxidoreductase; Provisional
Probab=91.12 E-value=1.2 Score=42.01 Aligned_cols=61 Identities=13% Similarity=0.178 Sum_probs=39.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
+|+|.|.|+||.||.+..+.+.+. .++|+++ .+|.+.+.+ +++.+...+ ..|-.+...+++
T Consensus 2 ~k~vlVtGasg~IG~~la~~l~~~--g~~v~~~--~r~~~~~~~-~~~~~~~~~-~~D~~~~~~~~~ 62 (256)
T PRK08017 2 QKSVLITGCSSGIGLEAALELKRR--GYRVLAA--CRKPDDVAR-MNSLGFTGI-LLDLDDPESVER 62 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHhHH-HHhCCCeEE-EeecCCHHHHHH
Confidence 468999999999999999999876 5677665 356666543 333443332 344444444444
No 162
>PRK06914 short chain dehydrogenase; Provisional
Probab=90.97 E-value=2.1 Score=41.30 Aligned_cols=40 Identities=23% Similarity=0.192 Sum_probs=30.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
.|.+.|.|+||.||.+..+-+.+. .++|++++ ++.+.+.+
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 42 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKK--GYLVIATM--RNPEKQEN 42 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhC--CCEEEEEe--CCHHHHHH
Confidence 367999999999999999988775 68888764 44444433
No 163
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=90.87 E-value=1.2 Score=46.48 Aligned_cols=39 Identities=13% Similarity=0.304 Sum_probs=32.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL 116 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~ 116 (473)
+-||+|+|. |.||+..+..+.++|+ |+++|+..++..+.
T Consensus 3 kIRVgIVG~-GnIGr~~a~al~~~pd-~ELVgV~dr~~~~~ 41 (324)
T TIGR01921 3 KIRAAIVGY-GNLGRSVEKAIQQQPD-MELVGVFSRRGAET 41 (324)
T ss_pred CcEEEEEee-cHHHHHHHHHHHhCCC-cEEEEEEcCCcHHH
Confidence 358999997 9999999999998875 99999877764443
No 164
>PRK06841 short chain dehydrogenase; Provisional
Probab=90.82 E-value=1.8 Score=40.91 Aligned_cols=33 Identities=27% Similarity=0.326 Sum_probs=27.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.|++.|.|+||.||..+...+.+. .++|+.++-
T Consensus 15 ~k~vlItGas~~IG~~la~~l~~~--G~~Vi~~~r 47 (255)
T PRK06841 15 GKVAVVTGGASGIGHAIAELFAAK--GARVALLDR 47 (255)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC
Confidence 368999999999999999999875 678887653
No 165
>PLN02572 UDP-sulfoquinovose synthase
Probab=90.81 E-value=1 Score=47.97 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=27.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.+|+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 46 ~~k~VLVTGatGfIGs~Lv~~L~~~--G~~V~~~d 78 (442)
T PLN02572 46 KKKKVMVIGGDGYCGWATALHLSKR--GYEVAIVD 78 (442)
T ss_pred cCCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe
Confidence 3467999999999999999988875 68888874
No 166
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=90.81 E-value=0.75 Score=40.70 Aligned_cols=35 Identities=17% Similarity=0.434 Sum_probs=31.7
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (473)
||+|.|+||=.|+...+.+.++| .|++++....++
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~-~~~lv~~v~~~~ 36 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESP-GFELVGAVDRKP 36 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHST-TEEEEEEEETTT
T ss_pred EEEEECCCCHHHHHHHHHHHhcC-CcEEEEEEecCC
Confidence 79999999999999999999964 599999988776
No 167
>PRK07074 short chain dehydrogenase; Provisional
Probab=90.74 E-value=2.7 Score=39.83 Aligned_cols=82 Identities=18% Similarity=0.159 Sum_probs=49.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC-CE-EEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP-QV-VAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P-~~-v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
.|++.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+...+.+. +. +.-.|-.+.+.++..+.
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~-------- 69 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAA--GDRVLALD--IDAAALAAFADALGDARFVPVACDLTDAASLAAALA-------- 69 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH--------
Confidence 368999999999999999988875 57787765 455555444443321 22 22344444444544331
Q ss_pred EechhhHHHhhcCCCCCEEEEec
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|.||+..
T Consensus 70 -----~~~~--~~~~~d~vi~~a 85 (257)
T PRK07074 70 -----NAAA--ERGPVDVLVANA 85 (257)
T ss_pred -----HHHH--HcCCCCEEEECC
Confidence 1111 123588888875
No 168
>PRK07478 short chain dehydrogenase; Provisional
Probab=90.73 E-value=2 Score=40.77 Aligned_cols=63 Identities=19% Similarity=0.153 Sum_probs=40.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|++.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+. .++...+...+ .|-.+.+.+++.
T Consensus 7 k~~lItGas~giG~~ia~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 73 (254)
T PRK07478 7 KVAIITGASSGIGRAAAKLFARE--GAKVVVGA--RRQAELDQLVAEIRAEGGEAVALAGDVRDEAYAKAL 73 (254)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHH
Confidence 68999999999999999988876 56777664 444554443 44444444333 344444444443
No 169
>PRK07904 short chain dehydrogenase; Provisional
Probab=90.70 E-value=3.2 Score=40.03 Aligned_cols=35 Identities=31% Similarity=0.415 Sum_probs=27.5
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
..+|+|.|.|+||-||....+-+.+.. .++|+.++
T Consensus 6 ~~~~~vlItGas~giG~~la~~l~~~g-g~~V~~~~ 40 (253)
T PRK07904 6 GNPQTILLLGGTSEIGLAICERYLKNA-PARVVLAA 40 (253)
T ss_pred CCCcEEEEEcCCcHHHHHHHHHHHhcC-CCeEEEEe
Confidence 456789999999999999998876642 37887664
No 170
>PRK07109 short chain dehydrogenase; Provisional
Probab=90.63 E-value=2.1 Score=43.51 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=51.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH---HHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L---~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|+|.|.|+||.||..+.+-+.+. .++|+.++ +|-+.+ .+++++...+...+ .|-.+.+.+++.+.
T Consensus 8 ~k~vlITGas~gIG~~la~~la~~--G~~Vvl~~--R~~~~l~~~~~~l~~~g~~~~~v~~Dv~d~~~v~~~~~------ 77 (334)
T PRK07109 8 RQVVVITGASAGVGRATARAFARR--GAKVVLLA--RGEEGLEALAAEIRAAGGEALAVVADVADAEAVQAAAD------ 77 (334)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHHcCCcEEEEEecCCCHHHHHHHHH------
Confidence 468999999999999999988775 57777664 445444 44445555554433 45455445544321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ +....|++|+..
T Consensus 78 -------~~~~--~~g~iD~lInnA 93 (334)
T PRK07109 78 -------RAEE--ELGPIDTWVNNA 93 (334)
T ss_pred -------HHHH--HCCCCCEEEECC
Confidence 1111 224689999873
No 171
>PRK06701 short chain dehydrogenase; Provisional
Probab=90.63 E-value=3.2 Score=41.09 Aligned_cols=65 Identities=14% Similarity=0.108 Sum_probs=40.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC--HHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N--v~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|++.|.|+||.||.....-+.++ .++|+.++...+ .+.+.+.++....+...+ .|-.+...+.+.
T Consensus 47 k~iLItGasggIG~~la~~l~~~--G~~V~l~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 114 (290)
T PRK06701 47 KVALITGGDSGIGRAVAVLFAKE--GADIAIVYLDEHEDANETKQRVEKEGVKCLLIPGDVSDEAFCKDA 114 (290)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCeEEEEEccCCCHHHHHHH
Confidence 68999999999999999998876 577765544322 334444444333333332 454444444443
No 172
>PRK05993 short chain dehydrogenase; Provisional
Probab=90.57 E-value=2.8 Score=40.79 Aligned_cols=42 Identities=19% Similarity=0.232 Sum_probs=32.4
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
++|+|.|.|+||.||.....-+.+. .++|++++ +|.+.+.+.
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~--G~~Vi~~~--r~~~~~~~l 44 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSD--GWRVFATC--RKEEDVAAL 44 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHH
Confidence 3478999999999999999888775 67888764 556666544
No 173
>PRK07063 short chain dehydrogenase; Provisional
Probab=90.56 E-value=2.2 Score=40.68 Aligned_cols=45 Identities=18% Similarity=0.130 Sum_probs=34.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|++.|.|+||.||..+.+.+.+. .++|+.+. +|.+.+.+.+++.
T Consensus 7 ~k~vlVtGas~gIG~~~a~~l~~~--G~~vv~~~--r~~~~~~~~~~~~ 51 (260)
T PRK07063 7 GKVALVTGAAQGIGAAIARAFARE--GAAVALAD--LDAALAERAAAAI 51 (260)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 478999999999999999999876 57777654 4556665555444
No 174
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=90.54 E-value=2.2 Score=40.94 Aligned_cols=65 Identities=17% Similarity=0.106 Sum_probs=42.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh----CCCEE-EEeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF----KPQVV-AVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f----~P~~v-~v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||..+.+-+.+. .++|+. .+.+|.+.+.+.+++. ..+.. ...|-.+.+.+++.
T Consensus 8 ~k~vlItGas~gIG~~ia~~l~~~--G~~v~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 77 (260)
T PRK08416 8 GKTLVISGGTRGIGKAIVYEFAQS--GVNIAF-TYNSNVEEANKIAEDLEQKYGIKAKAYPLNILEPETYKEL 77 (260)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEE-EcCCCHHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 478999999999999999988875 566654 4556776665555443 22322 23454444445443
No 175
>PRK05872 short chain dehydrogenase; Provisional
Probab=90.48 E-value=2.5 Score=41.72 Aligned_cols=82 Identities=18% Similarity=0.205 Sum_probs=52.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC--CEEE-EeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP--QVVA-VRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P--~~v~-v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|++.|.|+||.||..+...+.+. ..+|+.+ ++|.+.+.+.++++.. +... ..|-.+.+.+++.+.
T Consensus 9 gk~vlItGas~gIG~~ia~~l~~~--G~~V~~~--~r~~~~l~~~~~~l~~~~~~~~~~~Dv~d~~~v~~~~~------- 77 (296)
T PRK05872 9 GKVVVVTGAARGIGAELARRLHAR--GAKLALV--DLEEAELAALAAELGGDDRVLTVVADVTDLAAMQAAAE------- 77 (296)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhcCCCcEEEEEecCCCHHHHHHHHH-------
Confidence 368999999999999999999876 4677655 3677777777776642 2221 145444444444331
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|+||+..
T Consensus 78 ------~~~~--~~g~id~vI~nA 93 (296)
T PRK05872 78 ------EAVE--RFGGIDVVVANA 93 (296)
T ss_pred ------HHHH--HcCCCCEEEECC
Confidence 1111 124689999874
No 176
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=90.47 E-value=3.1 Score=39.07 Aligned_cols=83 Identities=23% Similarity=0.219 Sum_probs=49.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~---~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|.+.|.|+||.||..+.+-+.++ ..+|+.+.. ++.+... +..++...+.+.+ .|-.+...+.+.+.
T Consensus 3 ~k~~lVtG~s~giG~~~a~~l~~~--G~~vv~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~------ 73 (246)
T PRK12938 3 QRIAYVTGGMGGIGTSICQRLHKD--GFKVVAGCG-PNSPRRVKWLEDQKALGFDFIASEGNVGDWDSTKAAFD------ 73 (246)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEEcC-CChHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHHH------
Confidence 367999999999999999999887 567777543 3333332 3333334444332 45555555544331
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+. ..+.|+||+..
T Consensus 74 -------~~~~~--~~~id~li~~a 89 (246)
T PRK12938 74 -------KVKAE--VGEIDVLVNNA 89 (246)
T ss_pred -------HHHHH--hCCCCEEEECC
Confidence 11221 24689998874
No 177
>PRK09242 tropinone reductase; Provisional
Probab=90.39 E-value=2.5 Score=40.20 Aligned_cols=45 Identities=16% Similarity=0.156 Sum_probs=33.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|++.|.|+||.||.++.+.+.+. .++|+.+. +|.+.+.+...++
T Consensus 9 ~k~~lItGa~~gIG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~l 53 (257)
T PRK09242 9 GQTALITGASKGIGLAIAREFLGL--GADVLIVA--RDADALAQARDEL 53 (257)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 378999999999999999999875 57777664 4555555544443
No 178
>PRK12937 short chain dehydrogenase; Provisional
Probab=90.35 E-value=3.4 Score=38.60 Aligned_cols=83 Identities=14% Similarity=0.135 Sum_probs=49.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHH---HHHHHHHhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNIT---LLADQVKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~---~L~~q~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||....+.+.+. .++|+.+. .++-+ .+.+.++.+..+...+ .|-.+...+++.+.
T Consensus 5 ~~~vlItG~~~~iG~~la~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~------ 75 (245)
T PRK12937 5 NKVAIVTGASRGIGAAIARRLAAD--GFAVAVNY-AGSAAAADELVAEIEAAGGRAIAVQADVADAAAVTRLFD------ 75 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEec-CCCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHHHH------
Confidence 378999999999999999998876 56776543 44433 3444444444443333 34444444544432
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ...++|+|++..
T Consensus 76 -------~~~~--~~~~id~vi~~a 91 (245)
T PRK12937 76 -------AAET--AFGRIDVLVNNA 91 (245)
T ss_pred -------HHHH--HcCCCCEEEECC
Confidence 1111 123688988873
No 179
>cd05286 QOR2 Quinone oxidoreductase (QOR). Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone
Probab=90.26 E-value=2.4 Score=40.15 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=58.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|++|.+|..++.+.+.. .++|++.+ ++-+.+ +.++++..+.+...++.. +.
T Consensus 138 ~~vlI~g~~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~---~~--------------- 194 (320)
T cd05286 138 DTVLVHAAAGGVGLLLTQWAKAL--GATVIGTV--SSEEKA-ELARAAGADHVINYRDED---FV--------------- 194 (320)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEc--CCHHHH-HHHHHCCCCEEEeCCchh---HH---------------
Confidence 68999999999999999999987 57787765 333443 334667765554332211 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+.++.....+|+|++.+.| ..+...+.+++.+-+
T Consensus 195 -~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~g~ 230 (320)
T cd05286 195 -ERVREITGGRGVDVVYDGVGK-DTFEGSLDSLRPRGT 230 (320)
T ss_pred -HHHHHHcCCCCeeEEEECCCc-HhHHHHHHhhccCcE
Confidence 112222233458999987766 456666666655433
No 180
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=90.26 E-value=2.5 Score=39.77 Aligned_cols=83 Identities=19% Similarity=0.175 Sum_probs=47.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc-CCHHHHHHHHHhhCCCEEE-EeCcccHHHHHHHHhcCCCCcEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG-SNITLLADQVKRFKPQVVA-VRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~-~Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
|++.|.|+||.||....+.+.+. .++|+.+.-. .+.+.+.++.++...+... ..|-.+...+++.+.
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~~~--------- 69 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKD--GFAVAVADLNEETAKETAKEINQAGGKAVAYKLDVSDKDQVFSAID--------- 69 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEeCCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH---------
Confidence 57999999999999999988876 5677766421 1122333444444433332 244444444444331
Q ss_pred echhhHHHhhcCCCCCEEEEec
Q 012004 155 AGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 70 ----~~~~--~~~~id~vi~~a 85 (254)
T TIGR02415 70 ----QAAE--KFGGFDVMVNNA 85 (254)
T ss_pred ----HHHH--HcCCCCEEEECC
Confidence 1111 223588998874
No 181
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=90.21 E-value=1.2 Score=41.79 Aligned_cols=63 Identities=21% Similarity=0.122 Sum_probs=39.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~---~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|++.|.|+||+||....+-+.+. .++|++++ ++.+.+.+... ....+...+ .|-.+.+.++..
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 68 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAA--GANVVVND--LGEAGAEAAAKVATDAGGSVIYLVADVTKEDEIADM 68 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCceEEEECCCCCHHHHHHH
Confidence 68999999999999999998875 56788764 34444444333 333333322 455555555544
No 182
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=90.19 E-value=2.3 Score=39.85 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=30.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+.
T Consensus 3 ~~~ilItGas~~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~ 43 (250)
T TIGR03206 3 DKTAIVTGGGGGIGGATCRRFAEE--GAKVAVFD--LNREAAEKV 43 (250)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEec--CCHHHHHHH
Confidence 478999999999999999988875 67777654 344444433
No 183
>PRK06197 short chain dehydrogenase; Provisional
Probab=90.19 E-value=2.7 Score=41.51 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=30.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
.|+|.|.|+||.||..+.+.+.+. .++|+.+ .+|.+.+.+
T Consensus 16 ~k~vlItGas~gIG~~~a~~l~~~--G~~vi~~--~r~~~~~~~ 55 (306)
T PRK06197 16 GRVAVVTGANTGLGYETAAALAAK--GAHVVLA--VRNLDKGKA 55 (306)
T ss_pred CCEEEEcCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHH
Confidence 378999999999999999988876 5777665 345555443
No 184
>PRK05875 short chain dehydrogenase; Provisional
Probab=90.17 E-value=3 Score=40.11 Aligned_cols=39 Identities=21% Similarity=0.182 Sum_probs=30.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
|++.|.|+||.||....+-+.+. .++|++++ ++.+.+.+
T Consensus 8 k~vlItGasg~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~ 46 (276)
T PRK05875 8 RTYLVTGGGSGIGKGVAAGLVAA--GAAVMIVG--RNPDKLAA 46 (276)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCeEEEEe--CCHHHHHH
Confidence 78999999999999999988775 67888765 34444433
No 185
>PRK07832 short chain dehydrogenase; Provisional
Probab=90.14 E-value=2.7 Score=40.62 Aligned_cols=43 Identities=23% Similarity=0.183 Sum_probs=32.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
|++.|.|+||.||......+.+. .++|+.+ ++|.+.+.+.+.+
T Consensus 1 k~vlItGas~giG~~la~~la~~--G~~vv~~--~r~~~~~~~~~~~ 43 (272)
T PRK07832 1 KRCFVTGAASGIGRATALRLAAQ--GAELFLT--DRDADGLAQTVAD 43 (272)
T ss_pred CEEEEeCCCCHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHH
Confidence 47999999999999999998875 5777665 3455655544444
No 186
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=90.13 E-value=3.2 Score=39.81 Aligned_cols=64 Identities=16% Similarity=0.109 Sum_probs=41.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.+...-+.++ .++|+.+ .++-+.+.++..++ ..+... ..|-.+...++..
T Consensus 10 ~k~~lItGa~~~iG~~ia~~l~~~--G~~vv~~--~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (265)
T PRK07097 10 GKIALITGASYGIGFAIAKAYAKA--GATIVFN--DINQELVDKGLAAYRELGIEAHGYVCDVTDEDGVQAM 77 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEE--eCCHHHHHHHHHHHHhcCCceEEEEcCCCCHHHHHHH
Confidence 378999999999999999988876 6777765 34445555444443 333333 3555555555544
No 187
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=90.08 E-value=3.2 Score=39.42 Aligned_cols=32 Identities=22% Similarity=0.305 Sum_probs=27.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|+|.|.|+||.||.++..-+.+. .++|+.+.
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~--g~~vi~~~ 33 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEE--GYRVAVAD 33 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEE
Confidence 468999999999999999999886 57776653
No 188
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=90.07 E-value=2.4 Score=41.94 Aligned_cols=30 Identities=30% Similarity=0.408 Sum_probs=26.0
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+|.|.|+||+||....+-+.+. .++|+++.
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~--g~~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQN--GHDVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHC--CCeEEEEe
Confidence 6999999999999999988764 68888874
No 189
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=89.91 E-value=3.3 Score=38.29 Aligned_cols=107 Identities=26% Similarity=0.343 Sum_probs=64.2
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH------hhCCCEEEEeCcccHHHHHHHHhcCCCCc
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~------~f~P~~v~v~de~~~~~l~~~l~~~~~~~ 151 (473)
||+|.|. |-||+..++.+.+. ..++++++..-.+.+.++-+.+ .|++. +...+.. +.-.+..+
T Consensus 2 kv~I~G~-GriGr~v~~~~~~~-~~~~lvai~d~~~~~~~a~ll~~Ds~hg~~~~~-v~~~~~~--------l~i~g~~i 70 (149)
T smart00846 2 KVGINGF-GRIGRLVLRALLER-PDIEVVAINDLTDPETLAHLLKYDSVHGRFPGE-VEVDEDG--------LIVNGKKI 70 (149)
T ss_pred EEEEECc-CHHHHHHHHHHHhC-CCCEEEEeecCCCHHHHHHHhcccCCCCCCCCc-EEEeCCE--------EEECCEEE
Confidence 7999998 99999999999876 4699999876567888877765 12222 2111111 00011122
Q ss_pred EEEechhhHHHhh-cCCCCCEEEEecccccCcHHHH-HHHHcC-Ccccc
Q 012004 152 EILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTV-AAIEAG-KDIAL 197 (473)
Q Consensus 152 ~v~~G~egl~~la-~~~~~D~Vv~AIvG~aGL~ptl-~Ai~~G-K~IaL 197 (473)
.++. +....++- ...++|+||.+ +|.-+-.... .-+++| |+|.+
T Consensus 71 ~~~~-~~~p~~~~w~~~gvDiVie~-tG~f~~~~~~~~hl~~GakkVii 117 (149)
T smart00846 71 KVLA-ERDPANLPWKELGVDIVVEC-TGKFTTREKASAHLKAGAKKVII 117 (149)
T ss_pred EEEe-cCChHHCcccccCCeEEEec-cccccchHHHHHHHHcCCCEEEe
Confidence 3332 22222221 23478999999 8876666644 456667 55533
No 190
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=89.88 E-value=1.8 Score=46.96 Aligned_cols=55 Identities=16% Similarity=0.216 Sum_probs=39.4
Q ss_pred cccCCCCCCeeEEEEccCChHhHHHHHHHHhC-------CCceEEEEEeccCCHHHHHHHHHhh
Q 012004 68 TFRKTWDGPKPISVLGSTGSIGTQTLDIVAEH-------EDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 68 ~~~~~~~~~k~I~ILGSTGSIG~qtLdVi~~~-------pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+..++|..|-||+|.|++|.||.+.+--+... +---+++-+ ..|-+++.-++.++
T Consensus 92 ~~~~~~~~~~KV~IIGAaG~VG~~~A~~L~~~~v~g~~~~i~~eLvli--D~~~~~a~G~amDL 153 (444)
T PLN00112 92 EETKSWKKLINVAVSGAAGMISNHLLFKLASGEVFGPDQPIALKLLGS--ERSKQALEGVAMEL 153 (444)
T ss_pred hhhhcCCCCeEEEEECCCcHHHHHHHHHHHhcccccCCCCcccEEEEE--cCCcchhHHHHHHH
Confidence 34578999999999999999999998877653 111234433 45777777777655
No 191
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=89.87 E-value=2 Score=37.95 Aligned_cols=47 Identities=19% Similarity=0.286 Sum_probs=33.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P 126 (473)
.++|.|+|+ |.+|.....-+.+.. ..+|... .+|.+.+.+.++++..
T Consensus 19 ~~~i~iiG~-G~~g~~~a~~l~~~g-~~~v~v~--~r~~~~~~~~~~~~~~ 65 (155)
T cd01065 19 GKKVLILGA-GGAARAVAYALAELG-AAKIVIV--NRTLEKAKALAERFGE 65 (155)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC-CCEEEEE--cCCHHHHHHHHHHHhh
Confidence 478999997 999999999888763 2334332 4677777777776653
No 192
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=89.84 E-value=1.5 Score=44.08 Aligned_cols=34 Identities=24% Similarity=0.404 Sum_probs=27.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|+|.|.|+||+||.+..+-+.+..+.++|+++.
T Consensus 4 ~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~ 37 (324)
T TIGR03589 4 NKSILITGGTGSFGKAFISRLLENYNPKKIIIYS 37 (324)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEc
Confidence 3689999999999999999887754346787764
No 193
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=89.77 E-value=2.8 Score=39.72 Aligned_cols=45 Identities=20% Similarity=0.121 Sum_probs=33.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|++.|.|+||.||.++..-+.+. .++|+.. .+|.+.+.+...+.
T Consensus 9 ~k~~lItGas~giG~~ia~~L~~~--G~~vvl~--~r~~~~~~~~~~~l 53 (254)
T PRK08085 9 GKNILITGSAQGIGFLLATGLAEY--GAEIIIN--DITAERAELAVAKL 53 (254)
T ss_pred CCEEEEECCCChHHHHHHHHHHHc--CCEEEEE--cCCHHHHHHHHHHH
Confidence 478999999999999999999876 5777754 34555555544443
No 194
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=89.77 E-value=3.2 Score=36.51 Aligned_cols=84 Identities=14% Similarity=0.173 Sum_probs=50.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~ 152 (473)
|.+.|.|+||=||.+..+...+. ....|+.++-+.+.+.+.+. ++....+...+ .|-.+.+.+++.+..
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~-g~~~v~~~~r~~~~~~~~~l~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~------ 73 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARR-GARVVILTSRSEDSEGAQELIQELKAPGAKITFIECDLSDPESIRALIEE------ 73 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHT-TTEEEEEEESSCHHHHHHHHHHHHHHTTSEEEEEESETTSHHHHHHHHHH------
T ss_pred CEEEEECCCCHHHHHHHHHHHhc-CceEEEEeeecccccccccccccccccccccccccccccccccccccccc------
Confidence 68999999999999999999886 34444444433124444444 44444555544 444445555554321
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
+. .+....|++++..
T Consensus 74 -------~~--~~~~~ld~li~~a 88 (167)
T PF00106_consen 74 -------VI--KRFGPLDILINNA 88 (167)
T ss_dssp -------HH--HHHSSESEEEEEC
T ss_pred -------cc--ccccccccccccc
Confidence 11 1345699999873
No 195
>PRK05854 short chain dehydrogenase; Provisional
Probab=89.76 E-value=4.4 Score=40.65 Aligned_cols=81 Identities=15% Similarity=0.060 Sum_probs=49.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCC--CEE-EEeCcccHHHHHHHHhcCCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKP--QVV-AVRNESLLDEIKEALANVEE 149 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~---~f~P--~~v-~v~de~~~~~l~~~l~~~~~ 149 (473)
.|.+.|.|+||.||..+...+.+. .++|+.+ .+|.+.+.+.+. +..| +.. .-.|-.+.+.+++...
T Consensus 14 gk~~lITGas~GIG~~~a~~La~~--G~~Vil~--~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~---- 85 (313)
T PRK05854 14 GKRAVVTGASDGLGLGLARRLAAA--GAEVILP--VRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGE---- 85 (313)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHH----
Confidence 478999999999999999999876 5777654 355555444333 3223 222 2245555555554321
Q ss_pred CcEEEechhhHHHhhcCCCCCEEEEe
Q 012004 150 KPEILAGEQGVIEAARHPDAVTVVTG 175 (473)
Q Consensus 150 ~~~v~~G~egl~~la~~~~~D~Vv~A 175 (473)
.+. ......|++|+.
T Consensus 86 ---------~~~--~~~~~iD~li~n 100 (313)
T PRK05854 86 ---------QLR--AEGRPIHLLINN 100 (313)
T ss_pred ---------HHH--HhCCCccEEEEC
Confidence 111 123568998886
No 196
>PLN02725 GDP-4-keto-6-deoxymannose-3,5-epimerase-4-reductase
Probab=89.76 E-value=0.56 Score=45.48 Aligned_cols=49 Identities=18% Similarity=0.224 Sum_probs=35.1
Q ss_pred EEEccCChHhHHHHHHHHhCCCceEEEEEeccC-----CHHHHHHHHHhhCCCEEE
Q 012004 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-----NITLLADQVKRFKPQVVA 130 (473)
Q Consensus 80 ~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-----Nv~~L~~q~~~f~P~~v~ 130 (473)
.|.|+||+||++.++-+.+. .++|+.+..+. +.+.|.+..+.++|++|+
T Consensus 1 lItGa~GfiG~~l~~~L~~~--g~~v~~~~~~~~~Dl~~~~~l~~~~~~~~~d~Vi 54 (306)
T PLN02725 1 FVAGHRGLVGSAIVRKLEAL--GFTNLVLRTHKELDLTRQADVEAFFAKEKPTYVI 54 (306)
T ss_pred CcccCCCcccHHHHHHHHhC--CCcEEEeeccccCCCCCHHHHHHHHhccCCCEEE
Confidence 38999999999999999775 56666654433 444566666667777665
No 197
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.70 E-value=2 Score=42.02 Aligned_cols=92 Identities=15% Similarity=0.131 Sum_probs=58.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCccc-HHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~-~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|++|.+|..++.+.+.. ..+|++.+.. -++ .+.++++..+.+.-.++.. ...++
T Consensus 145 ~~vlI~ga~g~vG~~aiqlA~~~--G~~vi~~~~s--~~~-~~~l~~~Ga~~vi~~~~~~~~~~v~-------------- 205 (329)
T cd08294 145 ETVVVNGAAGAVGSLVGQIAKIK--GCKVIGCAGS--DDK-VAWLKELGFDAVFNYKTVSLEEALK-------------- 205 (329)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHcCCCEEEeCCCccHHHHHH--------------
Confidence 68999999999999999999987 5678776532 233 3455667777665433222 11221
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
++.. ..+|+|++.+.| ..+...+..++.+-++
T Consensus 206 ------~~~~-~gvd~vld~~g~-~~~~~~~~~l~~~G~i 237 (329)
T cd08294 206 ------EAAP-DGIDCYFDNVGG-EFSSTVLSHMNDFGRV 237 (329)
T ss_pred ------HHCC-CCcEEEEECCCH-HHHHHHHHhhccCCEE
Confidence 2222 358999997765 5566666666555443
No 198
>PRK05866 short chain dehydrogenase; Provisional
Probab=89.62 E-value=4.1 Score=40.44 Aligned_cols=43 Identities=30% Similarity=0.366 Sum_probs=33.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
|++.|.|+||-||....+.+.++ .++|+.++ +|.+.+.+...+
T Consensus 41 k~vlItGasggIG~~la~~La~~--G~~Vi~~~--R~~~~l~~~~~~ 83 (293)
T PRK05866 41 KRILLTGASSGIGEAAAEQFARR--GATVVAVA--RREDLLDAVADR 83 (293)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHH
Confidence 78999999999999999999886 67887653 456666554443
No 199
>PRK05650 short chain dehydrogenase; Provisional
Probab=89.58 E-value=3.2 Score=39.95 Aligned_cols=43 Identities=14% Similarity=0.134 Sum_probs=31.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
|+|.|.|+||.||....+.+.+. .++|+.+. ++.+.+.+...+
T Consensus 1 ~~vlVtGasggIG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 43 (270)
T PRK05650 1 NRVMITGAASGLGRAIALRWARE--GWRLALAD--VNEEGGEETLKL 43 (270)
T ss_pred CEEEEecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 47999999999999999988876 66776543 455555554443
No 200
>PRK06139 short chain dehydrogenase; Provisional
Probab=89.54 E-value=2 Score=43.93 Aligned_cols=84 Identities=19% Similarity=0.219 Sum_probs=52.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|.+.|.|+||.||..+...+.+. .++|+.++ +|-+.|.+. ++++..+..++ .|-.+.+.+++...
T Consensus 7 ~k~vlITGAs~GIG~aia~~la~~--G~~Vvl~~--R~~~~l~~~~~~~~~~g~~~~~~~~Dv~d~~~v~~~~~------ 76 (330)
T PRK06139 7 GAVVVITGASSGIGQATAEAFARR--GARLVLAA--RDEEALQAVAEECRALGAEVLVVPTDVTDADQVKALAT------ 76 (330)
T ss_pred CCEEEEcCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEeeCCCHHHHHHHHH------
Confidence 378999999999999999999886 56777543 566666544 44445554333 45444444443321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEecccc
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGIVGC 179 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AIvG~ 179 (473)
.+.+ ....+|++|+. +|+
T Consensus 77 -------~~~~--~~g~iD~lVnn-AG~ 94 (330)
T PRK06139 77 -------QAAS--FGGRIDVWVNN-VGV 94 (330)
T ss_pred -------HHHH--hcCCCCEEEEC-CCc
Confidence 1111 12468999986 454
No 201
>PLN02214 cinnamoyl-CoA reductase
Probab=89.51 E-value=1.8 Score=43.88 Aligned_cols=33 Identities=24% Similarity=0.368 Sum_probs=28.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
+|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 10 ~~~vlVTGatGfIG~~l~~~L~~~--G~~V~~~~r 42 (342)
T PLN02214 10 GKTVCVTGAGGYIASWIVKILLER--GYTVKGTVR 42 (342)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--cCEEEEEeC
Confidence 468999999999999999988775 688988763
No 202
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=89.49 E-value=3.8 Score=38.13 Aligned_cols=34 Identities=24% Similarity=0.272 Sum_probs=28.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
+|++.|.|+||.||.++.+-+.+. .++|+.+.-.
T Consensus 2 ~k~vlItG~s~~iG~~la~~l~~~--g~~vi~~~r~ 35 (245)
T PRK12824 2 KKIALVTGAKRGIGSAIARELLND--GYRVIATYFS 35 (245)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHc--CCEEEEEeCC
Confidence 578999999999999999998876 5788877544
No 203
>PRK08339 short chain dehydrogenase; Provisional
Probab=89.48 E-value=3.6 Score=39.87 Aligned_cols=64 Identities=17% Similarity=0.165 Sum_probs=41.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh----CCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF----KPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f----~P~~v~-v~de~~~~~l~~~ 143 (473)
.|.+.|.|+||.||..+.+-+.+. .++|+.+ .+|.+.+.+...++ .++... ..|-.+...+++.
T Consensus 8 ~k~~lItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~ 76 (263)
T PRK08339 8 GKLAFTTASSKGIGFGVARVLARA--GADVILL--SRNEENLKKAREKIKSESNVDVSYIVADLTKREDLERT 76 (263)
T ss_pred CCEEEEeCCCCcHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHHHhhcCCceEEEEecCCCHHHHHHH
Confidence 378999999999999999998876 6777764 35666655544443 333322 2444444444443
No 204
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=89.48 E-value=3.2 Score=38.90 Aligned_cols=63 Identities=22% Similarity=0.138 Sum_probs=37.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH---HHHHhhCCCEEEE-eCcccHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIK 141 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~---~q~~~f~P~~v~v-~de~~~~~l~ 141 (473)
.|+|.|.|+||.||.+..+-+.+. .++|+.+. .++-+.+. +.+++...+...+ .|-.....+.
T Consensus 6 ~~~vlitGasg~iG~~l~~~l~~~--g~~v~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~ 72 (252)
T PRK06077 6 DKVVVVTGSGRGIGRAIAVRLAKE--GSLVVVNA-KKRAEEMNETLKMVKENGGEGIGVLADVSTREGCE 72 (252)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe-CCChHHHHHHHHHHHHcCCeeEEEEeccCCHHHHH
Confidence 478999999999999999988765 56776543 33334333 3344444443322 3434333443
No 205
>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members. Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=89.46 E-value=2.6 Score=41.33 Aligned_cols=93 Identities=10% Similarity=0.073 Sum_probs=59.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|++|++|..++.+.+.+ ..+|++++. +-+.. +.++++..+.+.-.++.. +.+
T Consensus 141 ~~vlI~ga~g~ig~~~~~~a~~~--g~~v~~~~~--~~~~~-~~~~~~g~~~v~~~~~~~---~~~-------------- 198 (329)
T cd08250 141 ETVLVTAAAGGTGQFAVQLAKLA--GCHVIGTCS--SDEKA-EFLKSLGCDRPINYKTED---LGE-------------- 198 (329)
T ss_pred CEEEEEeCccHHHHHHHHHHHHc--CCeEEEEeC--cHHHH-HHHHHcCCceEEeCCCcc---HHH--------------
Confidence 58999999999999999999987 566777653 33333 334667765554332221 111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.++.. ..+|+|++.+.| ..+...+..++.+-++
T Consensus 199 --~~~~~~~-~~vd~v~~~~g~-~~~~~~~~~l~~~g~~ 233 (329)
T cd08250 199 --VLKKEYP-KGVDVVYESVGG-EMFDTCVDNLALKGRL 233 (329)
T ss_pred --HHHHhcC-CCCeEEEECCcH-HHHHHHHHHhccCCeE
Confidence 1122222 358999998655 6777778887666543
No 206
>PLN02253 xanthoxin dehydrogenase
Probab=89.41 E-value=3.5 Score=39.81 Aligned_cols=82 Identities=16% Similarity=0.202 Sum_probs=49.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCEEE-EeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQVVA-VRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~--P~~v~-v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+. ++-+.+.+.+.+.. ++... ..|-.+.+.+++.+.
T Consensus 18 ~k~~lItGas~gIG~~la~~l~~~--G~~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~------- 86 (280)
T PLN02253 18 GKVALVTGGATGIGESIVRLFHKH--GAKVCIVD--LQDDLGQNVCDSLGGEPNVCFFHCDVTVEDDVSRAVD------- 86 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHhcCCCceEEEEeecCCHHHHHHHHH-------
Confidence 468999999999999999988876 57777653 33444444444432 22222 244444444544332
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 87 ------~~~~--~~g~id~li~~A 102 (280)
T PLN02253 87 ------FTVD--KFGTLDIMVNNA 102 (280)
T ss_pred ------HHHH--HhCCCCEEEECC
Confidence 1111 124689999863
No 207
>PRK12827 short chain dehydrogenase; Provisional
Probab=89.31 E-value=1.9 Score=40.14 Aligned_cols=66 Identities=11% Similarity=0.117 Sum_probs=41.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe--ccCCHHHHHHHHHhh---CCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA--AGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa--a~~Nv~~L~~q~~~f---~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.....-+.++ .++|+.+. ..++.+.+.+...++ ..+... ..|-.+...++..
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (249)
T PRK12827 6 SRRVLITGGSGGLGRAIAVRLAAD--GADVIVLDIHPMRGRAEADAVAAGIEAAGGKALGLAFDVRDFAATRAA 77 (249)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEcCcccccHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 468999999999999999888876 66777764 234555555444443 334333 2444444444443
No 208
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=89.30 E-value=1.5 Score=45.25 Aligned_cols=42 Identities=19% Similarity=0.333 Sum_probs=26.4
Q ss_pred EEEEccCChHhHHHHHHHHhC-CCceEEEEEeccCCHHHHHHHHHhh
Q 012004 79 ISVLGSTGSIGTQTLDIVAEH-EDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~-pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
|.|.|+|||||.....-+.++ |.+ |+.+. +|-..|.+.-+++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~--lil~d--~~E~~l~~l~~~l 43 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKK--LILFD--RDENKLYELEREL 43 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SE--EEEEE--S-HHHHHHHHHHC
T ss_pred CEEEccccHHHHHHHHHHHhcCCCe--EEEeC--CChhHHHHHHHHH
Confidence 689999999999887766554 333 33332 4445555555555
No 209
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=89.28 E-value=1.2 Score=44.54 Aligned_cols=67 Identities=16% Similarity=0.137 Sum_probs=42.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC---HHHHHHHHHh---hCCCEE-EEeCcccHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN---ITLLADQVKR---FKPQVV-AVRNESLLDEIKEALA 145 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N---v~~L~~q~~~---f~P~~v-~v~de~~~~~l~~~l~ 145 (473)
|+|.|.|+||+||....+-+.+. .++|+++.-... .+.+.+...+ ..++.. ...|-.+...+.+.+.
T Consensus 7 ~~vlVTGatGfiG~~l~~~L~~~--G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~~~~~~~ 80 (340)
T PLN02653 7 KVALITGITGQDGSYLTEFLLSK--GYEVHGIIRRSSNFNTQRLDHIYIDPHPNKARMKLHYGDLSDASSLRRWLD 80 (340)
T ss_pred CEEEEECCCCccHHHHHHHHHHC--CCEEEEEecccccccccchhhhccccccccCceEEEEecCCCHHHHHHHHH
Confidence 67999999999999999999875 689999864321 2233332211 122222 2346556666766664
No 210
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.24 E-value=3.2 Score=41.15 Aligned_cols=94 Identities=13% Similarity=0.085 Sum_probs=56.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|++|.+|..++.+.+.. .. +|++.+. +-+++....+++..+.+.-.++.. +.+.
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~--G~~~Vi~~~~--s~~~~~~~~~~lGa~~vi~~~~~~---~~~~------------ 216 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLL--GCSRVVGICG--SDEKCQLLKSELGFDAAINYKTDN---VAER------------ 216 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCCEEEEEcC--CHHHHHHHHHhcCCcEEEECCCCC---HHHH------------
Confidence 68999999999999999999886 55 6777643 223332223347766654433222 1111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.++.. ..+|+|++++.|- .+.-.+..++.|=++
T Consensus 217 ----i~~~~~-~gvd~vid~~g~~-~~~~~~~~l~~~G~i 250 (345)
T cd08293 217 ----LRELCP-EGVDVYFDNVGGE-ISDTVISQMNENSHI 250 (345)
T ss_pred ----HHHHCC-CCceEEEECCCcH-HHHHHHHHhccCCEE
Confidence 122222 3589999976653 355566666555443
No 211
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=89.22 E-value=4.1 Score=37.88 Aligned_cols=40 Identities=28% Similarity=0.319 Sum_probs=30.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
|.+.|.|+||.||..+.+-+.+. .++|+++.. ++-+.+.+
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~--G~~v~~~~r-~~~~~~~~ 40 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKD--GYRVAANCG-PNEERAEA 40 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHC--CCEEEEEeC-CCHHHHHH
Confidence 57899999999999999999875 678877654 35454443
No 212
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=89.19 E-value=2.2 Score=42.33 Aligned_cols=94 Identities=16% Similarity=0.190 Sum_probs=60.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|+|+ |.||..++.+.+.. ..+ |+++. ++-+++ +.++++..+.+.-..+...+.+
T Consensus 164 g~~vlV~G~-G~vG~~~~~~ak~~--G~~~vi~~~--~~~~~~-~~~~~~ga~~~i~~~~~~~~~~-------------- 223 (339)
T cd08239 164 RDTVLVVGA-GPVGLGALMLARAL--GAEDVIGVD--PSPERL-ELAKALGADFVINSGQDDVQEI-------------- 223 (339)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEEcCCcchHHHH--------------
Confidence 368999986 99999999999987 455 77654 333443 4567887766543222112222
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.++.....+|+|+++..+-.++...+..++.+-++
T Consensus 224 ------~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 258 (339)
T cd08239 224 ------RELTSGAGADVAIECSGNTAARRLALEAVRPWGRL 258 (339)
T ss_pred ------HHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEE
Confidence 22222336899999977766666667777776554
No 213
>PF00551 Formyl_trans_N: Formyl transferase; InterPro: IPR002376 A number of formyl transferases belong to this group. Methionyl-tRNA formyltransferase transfers a formyl group onto the amino terminus of the acyl moiety of the methionyl aminoacyl-tRNA. The formyl group appears to play a dual role in the initiator identity of N-formylmethionyl-tRNA by promoting its recognition by IF2 and by impairing its binding to EFTU-GTP. Formyltetrahydrofolate dehydrogenase produces formate from formyl- tetrahydrofolate. This is the N-terminal domain of these enzymes and is found upstream of the C-terminal domain (IPR005793 from INTERPRO). The trifunctional glycinamide ribonucleotide synthetase-aminoimidazole ribonucleotide synthetase-glycinamide ribonucleotide transformylase catalyses the second, third and fifth steps in de novo purine biosynthesis. The glycinamide ribonucleotide transformylase belongs to this group.; GO: 0016742 hydroxymethyl-, formyl- and related transferase activity, 0009058 biosynthetic process; PDB: 3P9X_B 3OBI_A 3R8X_A 3KCQ_C 3RFO_D 3AV3_A 3N0V_D 3LOU_A 3O1L_A 4DS3_A ....
Probab=89.08 E-value=1.4 Score=41.39 Aligned_cols=55 Identities=13% Similarity=0.130 Sum_probs=43.1
Q ss_pred eeEEEEcc-CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE
Q 012004 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131 (473)
Q Consensus 77 k~I~ILGS-TGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v 131 (473)
+||+++|| +||.+...|+-+++....++++++..++.-..-..-+.+..+....+
T Consensus 1 mrI~~~~Sg~~~~~~~~l~~l~~~~~~~~iv~Vit~~~~~~~~~~~~~~~~~~~~~ 56 (181)
T PF00551_consen 1 MRIVFFGSGSGSFLKALLEALKARGHNVEIVLVITNPDKPRGRSRAIKNGIPAQVA 56 (181)
T ss_dssp EEEEEEESSSSHHHHHHHHHHHTTSSEEEEEEEEESSTTTHHHHHHHHTTHHEEEH
T ss_pred CEEEEEEcCCCHHHHHHHHHHHhCCCCceEEEEeccccccccccccccCCCCEEec
Confidence 58999987 77999999999998877889999988877666556666666655544
No 214
>TIGR00978 asd_EA aspartate-semialdehyde dehydrogenase (non-peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. Separate models are built for the two types in order to exclude the USG-1 protein, found in several species, which is specifically related to the Bacillus subtilis type of aspartate-semialdehyde dehydrogenase. Members of this type are found primarily in organisms that lack peptidoglycan.
Probab=89.06 E-value=0.49 Score=48.75 Aligned_cols=33 Identities=30% Similarity=0.619 Sum_probs=29.7
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
||+|+|+||.+|...++.+.+||+ |+|+++...
T Consensus 2 kVaIvGatG~~G~~L~~~l~~~~~-~~l~~v~~~ 34 (341)
T TIGR00978 2 RVAVLGATGLVGQKFVKLLAKHPY-FELAKVVAS 34 (341)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCC-ceEEEEEEC
Confidence 799999999999999999999876 899998653
No 215
>COG0136 Asd Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=89.01 E-value=0.55 Score=49.21 Aligned_cols=38 Identities=32% Similarity=0.483 Sum_probs=29.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHh-CCCceEEEEEeccCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALAAGSN 113 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~-~pd~f~VvaLaa~~N 113 (473)
+++|+|+|+||.+|+..++++.+ |++--++..++..++
T Consensus 1 ~~~VavvGATG~VG~~~~~~L~e~~f~~~~~~~~AS~rS 39 (334)
T COG0136 1 KLNVAVLGATGAVGQVLLELLEERHFPFEELVLLASARS 39 (334)
T ss_pred CcEEEEEeccchHHHHHHHHHHhcCCCcceEEEEecccc
Confidence 46899999999999999999998 776444555544443
No 216
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=88.93 E-value=1.1 Score=45.31 Aligned_cols=61 Identities=16% Similarity=0.157 Sum_probs=46.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC--CEEEEeCcccHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP--QVVAVRNESLLDEIK 141 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P--~~v~v~de~~~~~l~ 141 (473)
|-+.|-|||..||..|-+.+.+. .++|+.. +++.+.|.+.+.++.. -.+...|=.+...++
T Consensus 7 kv~lITGASSGiG~A~A~~l~~~--G~~vvl~--aRR~drL~~la~~~~~~~~~~~~~DVtD~~~~~ 69 (246)
T COG4221 7 KVALITGASSGIGEATARALAEA--GAKVVLA--ARREERLEALADEIGAGAALALALDVTDRAAVE 69 (246)
T ss_pred cEEEEecCcchHHHHHHHHHHHC--CCeEEEE--eccHHHHHHHHHhhccCceEEEeeccCCHHHHH
Confidence 67999999999999999999886 7888764 4788999999999984 233334444444433
No 217
>TIGR01746 Thioester-redct thioester reductase domain. It has been suggested that a NADP-binding motif can be found in the N-terminal portion of this domain that may form a Rossman-type fold.
Probab=88.91 E-value=1.1 Score=44.05 Aligned_cols=36 Identities=19% Similarity=0.402 Sum_probs=29.5
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (473)
+|.|.|+||+||...++-+.+.....+|+++.-..+
T Consensus 1 ~vlvtGatG~lG~~l~~~L~~~g~~~~V~~l~R~~~ 36 (367)
T TIGR01746 1 TVLLTGATGFLGAYLLEELLRRSTQAKVICLVRAAS 36 (367)
T ss_pred CEEEeccchHHHHHHHHHHHhCCCCCEEEEEEccCC
Confidence 589999999999999998887654578999875444
No 218
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.84 E-value=3.1 Score=44.26 Aligned_cols=117 Identities=20% Similarity=0.213 Sum_probs=65.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.|+|.|+|+ |.+|..+.+.+++. .++|+..-.. +.+. ...+.+.+... ++++..
T Consensus 16 ~~~v~viG~-G~~G~~~A~~L~~~--G~~V~~~d~~-~~~~--------------------~~~~~~~l~~~--gv~~~~ 69 (480)
T PRK01438 16 GLRVVVAGL-GVSGFAAADALLEL--GARVTVVDDG-DDER--------------------HRALAAILEAL--GATVRL 69 (480)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCC-chhh--------------------hHHHHHHHHHc--CCEEEE
Confidence 468999997 77999999999876 5777764322 2111 11222222222 356766
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhh
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCI 235 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL 235 (473)
|..-. ...++|+||.+. | +.|... +...|++.| +||+||-..+|+++
T Consensus 70 ~~~~~----~~~~~D~Vv~s~-G---i~~~~~----------------------~~~~a~~~g---i~v~~~~e~~~~~~ 116 (480)
T PRK01438 70 GPGPT----LPEDTDLVVTSP-G---WRPDAP----------------------LLAAAADAG---IPVWGEVELAWRLR 116 (480)
T ss_pred CCCcc----ccCCCCEEEECC-C---cCCCCH----------------------HHHHHHHCC---CeecchHHHHHHhh
Confidence 65332 234688888652 3 444211 123344445 55577776667765
Q ss_pred cCCCCCccceEEEEecCC
Q 012004 236 QGLPEGALRRIILTASGG 253 (473)
Q Consensus 236 ~g~~~~~v~kiiLTASGG 253 (473)
+.. ...+.|-+|.|-|
T Consensus 117 ~~~--~~~~~I~VTGTnG 132 (480)
T PRK01438 117 DPD--RPAPWLAVTGTNG 132 (480)
T ss_pred hcc--CCCCEEEEeCCCc
Confidence 421 1245677777766
No 219
>PRK12746 short chain dehydrogenase; Provisional
Probab=88.82 E-value=2.8 Score=39.54 Aligned_cols=46 Identities=20% Similarity=0.179 Sum_probs=34.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|+|.|.|+||.||....+-+.+. ..+|+.+. .++.+.+.+...++
T Consensus 6 ~~~ilItGasg~iG~~la~~l~~~--G~~v~i~~-~r~~~~~~~~~~~~ 51 (254)
T PRK12746 6 GKVALVTGASRGIGRAIAMRLAND--GALVAIHY-GRNKQAADETIREI 51 (254)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEc-CCCHHHHHHHHHHH
Confidence 378999999999999999988775 56665543 45666666665554
No 220
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=88.73 E-value=4.3 Score=38.64 Aligned_cols=62 Identities=16% Similarity=0.127 Sum_probs=38.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
|++.|.|+||.||.++.+.+.+. .++|+.+. +++-+.+. ..++.+.. ....|-.+.+.+++.
T Consensus 8 k~~lItGas~gIG~~~a~~l~~~--G~~v~~~~-~~~~~~~~-~l~~~~~~-~~~~Dl~~~~~~~~~ 69 (255)
T PRK06463 8 KVALITGGTRGIGRAIAEAFLRE--GAKVAVLY-NSAENEAK-ELREKGVF-TIKCDVGNRDQVKKS 69 (255)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe-CCcHHHHH-HHHhCCCe-EEEecCCCHHHHHHH
Confidence 78999999999999999998876 57777543 44434433 33332322 223454444445444
No 221
>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]
Probab=88.63 E-value=2.8 Score=43.86 Aligned_cols=140 Identities=17% Similarity=0.179 Sum_probs=82.9
Q ss_pred CCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCc
Q 012004 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 72 ~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~ 151 (473)
++...++|.|+|++|.+|+.++.+.+... |..+.-++..+-..| ++++.-+.|.=.++..+.+..+
T Consensus 154 ~~~~g~~vLv~ggsggVG~~aiQlAk~~~--~~~v~t~~s~e~~~l---~k~lGAd~vvdy~~~~~~e~~k--------- 219 (347)
T KOG1198|consen 154 KLSKGKSVLVLGGSGGVGTAAIQLAKHAG--AIKVVTACSKEKLEL---VKKLGADEVVDYKDENVVELIK--------- 219 (347)
T ss_pred ccCCCCeEEEEeCCcHHHHHHHHHHHhcC--CcEEEEEcccchHHH---HHHcCCcEeecCCCHHHHHHHH---------
Confidence 45556799999999999999999999874 455555554443333 5777777766433322211111
Q ss_pred EEEechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhH
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAI 231 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAI 231 (473)
... ...+|+|++.+.|. -+...+..+..+.+.+ -+...|......-.. -.
T Consensus 220 ----------k~~-~~~~DvVlD~vg~~-~~~~~~~~l~~~g~~~-----~i~~~~~~~~~~~~~-------------~~ 269 (347)
T KOG1198|consen 220 ----------KYT-GKGVDVVLDCVGGS-TLTKSLSCLLKGGGGA-----YIGLVGDELANYKLD-------------DL 269 (347)
T ss_pred ----------hhc-CCCccEEEECCCCC-ccccchhhhccCCceE-----EEEeccccccccccc-------------cc
Confidence 111 34799999998886 5665566666555443 344444443221111 12
Q ss_pred HHhhcCCCCCccceEEEEecCCCCCCCCh
Q 012004 232 FQCIQGLPEGALRRIILTASGGAFRDWPV 260 (473)
Q Consensus 232 fQcL~g~~~~~v~kiiLTASGGPFr~~~~ 260 (473)
|| . ...++...++..|.+|+....
T Consensus 270 ~~----~-~~~~~~~~~~~~~~~~~~~~~ 293 (347)
T KOG1198|consen 270 WQ----S-ANGIKLYSLGLKGVNYRWLYF 293 (347)
T ss_pred hh----h-hhhhhheeeeeeccceeeeee
Confidence 33 1 234667778888888875543
No 222
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=88.59 E-value=4.6 Score=40.71 Aligned_cols=104 Identities=15% Similarity=0.263 Sum_probs=62.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|+|+ |+||..++.+.+.. ..+|+++. ++-+++ +.++++..+.+.-..+...+.+.+.+.. . .
T Consensus 167 g~~VlV~G~-G~vG~~a~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~Ga~~~i~~~~~~~~~~~~~~~~------~-t 233 (349)
T TIGR03201 167 GDLVIVIGA-GGVGGYMVQTAKAM--GAAVVAID--IDPEKL-EMMKGFGADLTLNPKDKSAREVKKLIKA------F-A 233 (349)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCeEEEEc--CCHHHH-HHHHHhCCceEecCccccHHHHHHHHHh------h-c
Confidence 368999999 99999999999987 45777653 344554 4567888766543322222233332211 0 0
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaL 197 (473)
+..|+ ....|.|+.+..+..++.-.+.+++.|-++.+
T Consensus 234 ~~~g~-----d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~ 270 (349)
T TIGR03201 234 KARGL-----RSTGWKIFECSGSKPGQESALSLLSHGGTLVV 270 (349)
T ss_pred ccCCC-----CCCcCEEEECCCChHHHHHHHHHHhcCCeEEE
Confidence 11111 01146888887665666666777777766544
No 223
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=88.58 E-value=4.3 Score=38.83 Aligned_cols=80 Identities=21% Similarity=0.154 Sum_probs=47.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCE-EEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~--P~~-v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
++.|.|++|.||.++..-+.+. .++|+.+ .+|-+.+.+...+.+ .+. ....|-.+.+.+++.+.
T Consensus 2 ~vlItGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~l~~~~~~~~~~~Dv~d~~~~~~~~~--------- 68 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKK--GARVVIS--SRNEENLEKALKELKEYGEVYAVKADLSDKDDLKNLVK--------- 68 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCEEEEE--eCCHHHHHHHHHHHHhcCCceEEEcCCCCHHHHHHHHH---------
Confidence 7999999999999999988775 5777655 355565555444432 122 22344444444444321
Q ss_pred echhhHHHhhcCCCCCEEEEec
Q 012004 155 AGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|+||+..
T Consensus 69 ----~~~~--~~g~id~li~na 84 (259)
T PRK08340 69 ----EAWE--LLGGIDALVWNA 84 (259)
T ss_pred ----HHHH--hcCCCCEEEECC
Confidence 1111 234689999864
No 224
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=88.57 E-value=4.4 Score=38.52 Aligned_cols=64 Identities=19% Similarity=0.148 Sum_probs=39.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH---HHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L---~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|+|.|.|+||.||..+.+.+.++ .++|+.+. ++.+.+ .++.++...+... ..|-.+...+++.
T Consensus 11 ~k~vlVtG~s~gIG~~la~~l~~~--G~~vv~~~--r~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~~ 78 (255)
T PRK06113 11 GKCAIITGAGAGIGKEIAITFATA--GASVVVSD--INADAANHVVDEIQQLGGQAFACRCDITSEQELSAL 78 (255)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 589999999999999999999886 56777553 334443 3444433333322 2344444444443
No 225
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=88.56 E-value=0.49 Score=46.01 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=27.1
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
+|.|+|+||.||...++-+.+. .++|.+++-.
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~--g~~V~~~~R~ 32 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAA--SVPFLVASRS 32 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhC--CCcEEEEeCC
Confidence 5899999999999999988764 6889888743
No 226
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=88.49 E-value=2.3 Score=42.07 Aligned_cols=33 Identities=21% Similarity=0.313 Sum_probs=28.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.|+|.|.|+||+||....+-+.+. .++|++++-
T Consensus 5 ~~~vlVTGatG~iG~~l~~~L~~~--g~~V~~~~r 37 (322)
T PLN02986 5 GKLVCVTGASGYIASWIVKLLLLR--GYTVKATVR 37 (322)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEEC
Confidence 478999999999999999988875 688887754
No 227
>PRK07023 short chain dehydrogenase; Provisional
Probab=88.47 E-value=2 Score=40.54 Aligned_cols=34 Identities=15% Similarity=0.225 Sum_probs=28.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
|+++.|.|+||.||.+...-+.++ .++|+.++-.
T Consensus 1 ~~~vlItGasggiG~~ia~~l~~~--G~~v~~~~r~ 34 (243)
T PRK07023 1 AVRAIVTGHSRGLGAALAEQLLQP--GIAVLGVARS 34 (243)
T ss_pred CceEEEecCCcchHHHHHHHHHhC--CCEEEEEecC
Confidence 358999999999999999999876 6888876543
No 228
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=88.44 E-value=2.1 Score=43.19 Aligned_cols=31 Identities=26% Similarity=0.395 Sum_probs=27.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
++|.|.|+||+||....+-+.+. .++|+++.
T Consensus 11 ~~vLVtG~~GfIG~~l~~~L~~~--G~~V~~~~ 41 (353)
T PLN02896 11 GTYCVTGATGYIGSWLVKLLLQR--GYTVHATL 41 (353)
T ss_pred CEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe
Confidence 47999999999999999998875 68899874
No 229
>TIGR01777 yfcH conserved hypothetical protein TIGR01777. This model represents a clade of proteins of unknown function including the E. coli yfcH protein.
Probab=88.43 E-value=0.46 Score=45.52 Aligned_cols=30 Identities=27% Similarity=0.367 Sum_probs=26.1
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|.|+|+||+||+...+.+.+. .++|++++-
T Consensus 1 vlVtGatG~iG~~l~~~L~~~--g~~V~~~~r 30 (292)
T TIGR01777 1 ILITGGTGFIGRALTQRLTKD--GHEVTILTR 30 (292)
T ss_pred CEEEcccchhhHHHHHHHHHc--CCEEEEEeC
Confidence 579999999999999988764 689999873
No 230
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=88.42 E-value=0.53 Score=46.19 Aligned_cols=32 Identities=22% Similarity=0.384 Sum_probs=27.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~~ilVtGatGfIG~~l~~~L~~~--g~~V~~~~r 36 (322)
T PLN02662 5 KVVCVTGASGYIASWLVKLLLQR--GYTVKATVR 36 (322)
T ss_pred CEEEEECChHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 68999999999999999988876 678888763
No 231
>PRK06179 short chain dehydrogenase; Provisional
Probab=88.41 E-value=3.1 Score=39.80 Aligned_cols=78 Identities=21% Similarity=0.176 Sum_probs=47.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.|+|.|.|+||.||.....-+.+. .++|++++ +|.+.+... ..-.++..|-.+.+.+++.+.
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~--g~~V~~~~--r~~~~~~~~----~~~~~~~~D~~d~~~~~~~~~---------- 65 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARA--GYRVFGTS--RNPARAAPI----PGVELLELDVTDDASVQAAVD---------- 65 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHC--CCEEEEEe--CChhhcccc----CCCeeEEeecCCHHHHHHHHH----------
Confidence 468999999999999999888775 68888765 444443211 111233345555555555432
Q ss_pred chhhHHHhhcCCCCCEEEEec
Q 012004 156 GEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 66 ---~~~~--~~g~~d~li~~a 81 (270)
T PRK06179 66 ---EVIA--RAGRIDVLVNNA 81 (270)
T ss_pred ---HHHH--hCCCCCEEEECC
Confidence 1111 234589998874
No 232
>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=88.37 E-value=3.5 Score=40.76 Aligned_cols=91 Identities=18% Similarity=0.297 Sum_probs=58.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|+|++|++|..++.+.+.. ..+|++++. ++ . .+.++++..+++.-.++....+ .
T Consensus 179 ~~vlI~g~~g~ig~~~~~~a~~~--g~~vi~~~~-~~--~-~~~~~~~g~~~~~~~~~~~~~~-~--------------- 236 (350)
T cd08274 179 ETVLVTGASGGVGSALVQLAKRR--GAIVIAVAG-AA--K-EEAVRALGADTVILRDAPLLAD-A--------------- 236 (350)
T ss_pred CEEEEEcCCcHHHHHHHHHHHhc--CCEEEEEeC-ch--h-hHHHHhcCCeEEEeCCCccHHH-H---------------
Confidence 68999999999999999999987 566777763 32 2 3455677765433222222111 1
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+......+|+|++.+.| ..+...+.+++.+-++
T Consensus 237 -----~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~ 269 (350)
T cd08274 237 -----KALGGEPVDVVADVVGG-PLFPDLLRLLRPGGRY 269 (350)
T ss_pred -----HhhCCCCCcEEEecCCH-HHHHHHHHHhccCCEE
Confidence 11122358999988665 5677777777665543
No 233
>TIGR01546 GAPDH-II_archae glyceraldehyde-3-phosphate dehydrogenase, type II. All of the members of the seed are characterized. See, for instance. This model is very solid, there are no species falling between trusted and noise at this time. The closest relatives scoring in the noise are the class I GAPDH's.
Probab=88.18 E-value=2.9 Score=43.79 Aligned_cols=99 Identities=24% Similarity=0.339 Sum_probs=63.3
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechh
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQ 158 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~e 158 (473)
|+|.|. |.||+..++.+.+. ++++|+|+.- .+.+.++..+++++-+.+. ..+....++. + .++.+ .|.
T Consensus 1 VaInG~-GrIGr~varav~~~-~d~elVaVnD-~~~~~~a~lA~~lgyds~~-~~~~~~~~~~----~--~~l~v-~g~- 68 (333)
T TIGR01546 1 VGVNGY-GTIGKRVADAVTKQ-DDMKLVGVTK-TSPDFEAYRAKELGIPVYA-ASEEFIPRFE----E--AGIEV-AGT- 68 (333)
T ss_pred CEEECC-cHHHHHHHHHHhhC-CCcEEEEEec-CChHHHHHHHHHhCCCEEe-ecCCcceEec----c--CceEe-cCC-
Confidence 567776 99999999999886 5699999987 7788888888888765554 2221111111 1 12223 332
Q ss_pred hHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 159 GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 159 gl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.++. .++|+|+.+.-.+.+..=--.-++.|
T Consensus 69 -~eeLl--~~vDiVve~Tp~~~~~~na~~~~~~G 99 (333)
T TIGR01546 69 -LEDLL--EKVDIVVDATPGGIGAKNKPLYEKAG 99 (333)
T ss_pred -HHHHh--hcCCEEEECCCCCCChhhHHHHHhCC
Confidence 56665 36999999876666654433334444
No 234
>PRK07576 short chain dehydrogenase; Provisional
Probab=88.14 E-value=4.9 Score=38.78 Aligned_cols=81 Identities=17% Similarity=0.226 Sum_probs=49.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-eCcccHHHHHHHHhcCCCCcE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v-~de~~~~~l~~~l~~~~~~~~ 152 (473)
|++.|.|+||.||....+-+.+. ..+|+.+. ++.+.+.+...++ .++...+ .|-.+...++..+.
T Consensus 10 k~ilItGasggIG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~~~~------- 78 (264)
T PRK07576 10 KNVVVVGGTSGINLGIAQAFARA--GANVAVAS--RSQEKVDAAVAQLQQAGPEGLGVSADVRDYAAVEAAFA------- 78 (264)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHHhCCceEEEECCCCCHHHHHHHHH-------
Confidence 68999999999999999988875 56777664 4455555444333 3333322 34444444444331
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 79 ------~~~~--~~~~iD~vi~~a 94 (264)
T PRK07576 79 ------QIAD--EFGPIDVLVSGA 94 (264)
T ss_pred ------HHHH--HcCCCCEEEECC
Confidence 1111 124689999865
No 235
>smart00859 Semialdhyde_dh Semialdehyde dehydrogenase, NAD binding domain. The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase, an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.
Probab=88.12 E-value=0.78 Score=39.70 Aligned_cols=33 Identities=48% Similarity=0.846 Sum_probs=29.3
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
||+|+|+||-+|...+..+.++|+ |+++++...
T Consensus 1 ki~iiG~~g~~g~~~~~~l~~~~~-~~l~av~~~ 33 (122)
T smart00859 1 KVAIVGATGYVGQELLRLLAEHPD-FEVVALAAS 33 (122)
T ss_pred CEEEECCCChHHHHHHHHHhcCCC-ceEEEEEec
Confidence 689999999999999999999875 999999553
No 236
>PRK08862 short chain dehydrogenase; Provisional
Probab=88.10 E-value=4.2 Score=38.92 Aligned_cols=64 Identities=11% Similarity=0.101 Sum_probs=42.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHH---HHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLL---ADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L---~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|.+.|.|+|+-||.++...+.+. .++|+.. ++|.+.+ .+++++...+.+.+ .|-.+.+.+++.
T Consensus 5 ~k~~lVtGas~GIG~aia~~la~~--G~~V~~~--~r~~~~l~~~~~~i~~~~~~~~~~~~D~~~~~~~~~~ 72 (227)
T PRK08862 5 SSIILITSAGSVLGRTISCHFARL--GATLILC--DQDQSALKDTYEQCSALTDNVYSFQLKDFSQESIRHL 72 (227)
T ss_pred CeEEEEECCccHHHHHHHHHHHHC--CCEEEEE--cCCHHHHHHHHHHHHhcCCCeEEEEccCCCHHHHHHH
Confidence 378999999999999999999886 6777664 3455555 44455555554333 454444444443
No 237
>PRK06114 short chain dehydrogenase; Provisional
Probab=88.09 E-value=6 Score=37.72 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=41.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
.|.+.|.|+||.||..+..-+.+. .++|+.+.-.. ..+.+.++.+....+...+ .|-.+.+.+++
T Consensus 8 ~k~~lVtG~s~gIG~~ia~~l~~~--G~~v~~~~r~~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~i~~ 75 (254)
T PRK06114 8 GQVAFVTGAGSGIGQRIAIGLAQA--GADVALFDLRTDDGLAETAEHIEAAGRRAIQIAADVTSKADLRA 75 (254)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEeCCcchHHHHHHHHHHhcCCceEEEEcCCCCHHHHHH
Confidence 368999999999999999998875 67888765332 2345555555444343332 34444444443
No 238
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=88.09 E-value=4.1 Score=41.49 Aligned_cols=96 Identities=14% Similarity=0.103 Sum_probs=57.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|++|+||..++.+.+.. ..+|++.+. +-+++....+++..+.+.-.+++ ..+.+.
T Consensus 160 ~~VlV~GaaG~vG~~aiqlAk~~--G~~Vi~~~~--~~~k~~~~~~~lGa~~vi~~~~~--~~~~~~------------- 220 (348)
T PLN03154 160 DSVFVSAASGAVGQLVGQLAKLH--GCYVVGSAG--SSQKVDLLKNKLGFDEAFNYKEE--PDLDAA------------- 220 (348)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEcC--CHHHHHHHHHhcCCCEEEECCCc--ccHHHH-------------
Confidence 58999999999999999999987 567777543 33443222236777665533211 011111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.++.. ..+|+|++++.| ..+...+..++.|-++.
T Consensus 221 ---i~~~~~-~gvD~v~d~vG~-~~~~~~~~~l~~~G~iv 255 (348)
T PLN03154 221 ---LKRYFP-EGIDIYFDNVGG-DMLDAALLNMKIHGRIA 255 (348)
T ss_pred ---HHHHCC-CCcEEEEECCCH-HHHHHHHHHhccCCEEE
Confidence 112212 258999987654 45666666666665543
No 239
>PRK06125 short chain dehydrogenase; Provisional
Probab=88.06 E-value=3.9 Score=39.01 Aligned_cols=44 Identities=16% Similarity=0.258 Sum_probs=33.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
|++.|.|+||.||..+...+.+. .++|+.+. +|-+.+.+...+.
T Consensus 8 k~vlItG~~~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~l 51 (259)
T PRK06125 8 KRVLITGASKGIGAAAAEAFAAE--GCHLHLVA--RDADALEALAADL 51 (259)
T ss_pred CEEEEeCCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHHHHH
Confidence 78999999999999999999876 56777764 4556665554443
No 240
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=88.02 E-value=2.9 Score=40.39 Aligned_cols=30 Identities=37% Similarity=0.500 Sum_probs=25.5
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
||.|+|+||+||....+-+.++ .++|+++.
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~--g~~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLES--GHEVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhC--CCeEEEEe
Confidence 5899999999999999988776 57787763
No 241
>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases. yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH
Probab=87.89 E-value=3.2 Score=40.47 Aligned_cols=93 Identities=24% Similarity=0.351 Sum_probs=58.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|.|++|++|..++.+.+.. .++|++.+.. -+. .+.++++..+.+.-.++.. .+
T Consensus 147 ~~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~v~~~~~~~----~~------------- 204 (326)
T cd08289 147 QGPVLVTGATGGVGSLAVSILAKL--GYEVVASTGK--ADA-ADYLKKLGAKEVIPREELQ----EE------------- 204 (326)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCeEEEEecC--HHH-HHHHHHcCCCEEEcchhHH----HH-------------
Confidence 368999999999999999999987 5677766533 233 3444677765543221110 11
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.++ ....+|+|++.+.| ..+...+.+++.+-++
T Consensus 205 ---~~~~~-~~~~~d~vld~~g~-~~~~~~~~~l~~~G~~ 239 (326)
T cd08289 205 ---SIKPL-EKQRWAGAVDPVGG-KTLAYLLSTLQYGGSV 239 (326)
T ss_pred ---HHHhh-ccCCcCEEEECCcH-HHHHHHHHHhhcCCEE
Confidence 11112 12358999998655 6777777777665544
No 242
>COG1088 RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane]
Probab=87.89 E-value=1.7 Score=45.54 Aligned_cols=53 Identities=28% Similarity=0.382 Sum_probs=38.8
Q ss_pred eeEEEEccCChHhHHHHHHH-HhCCCc--eEEEEEeccCCHHHHHHHHHhhCCCEEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIV-AEHEDK--FRVVALAAGSNITLLADQVKRFKPQVVAV 131 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi-~~~pd~--f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v 131 (473)
+++.|.|+.|+||.+-+.-+ +++||. ..|-.|+...|.+-|..... +|.+..+
T Consensus 1 ~~iLVTGGaGFIGsnfvr~~~~~~~d~~v~~~DkLTYAgn~~~l~~~~~--~~~~~fv 56 (340)
T COG1088 1 MKILVTGGAGFIGSNFVRYILNKHPDDHVVNLDKLTYAGNLENLADVED--SPRYRFV 56 (340)
T ss_pred CcEEEecCcchHHHHHHHHHHhcCCCceEEEEecccccCCHHHHHhhhc--CCCceEE
Confidence 47999999999999988765 567773 33445678889998866554 4556555
No 243
>PRK08177 short chain dehydrogenase; Provisional
Probab=87.86 E-value=1.1 Score=41.91 Aligned_cols=33 Identities=18% Similarity=0.370 Sum_probs=28.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
||++.|.|+||.||....+-+.+. .++|++++-
T Consensus 1 ~k~vlItG~sg~iG~~la~~l~~~--G~~V~~~~r 33 (225)
T PRK08177 1 KRTALIIGASRGLGLGLVDRLLER--GWQVTATVR 33 (225)
T ss_pred CCEEEEeCCCchHHHHHHHHHHhC--CCEEEEEeC
Confidence 578999999999999999888875 678887763
No 244
>PLN02503 fatty acyl-CoA reductase 2
Probab=87.81 E-value=2.8 Score=47.11 Aligned_cols=39 Identities=15% Similarity=0.244 Sum_probs=31.2
Q ss_pred CCeeEEEEccCChHhHHHHHHH-HhCCCceEEEEEeccCC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIV-AEHEDKFRVVALAAGSN 113 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi-~~~pd~f~VvaLaa~~N 113 (473)
..|+|.|.|+||++|+..++-+ +..|+.-+|.+|.=.++
T Consensus 118 ~~k~VlVTGaTGFLGk~LlekLLr~~~~v~kIy~LvR~k~ 157 (605)
T PLN02503 118 RGKNFLITGATGFLAKVLIEKILRTNPDVGKIYLLIKAKD 157 (605)
T ss_pred cCCEEEEcCCchHHHHHHHHHHHHhCCCCcEEEEEEecCC
Confidence 3589999999999999999755 56788778899875433
No 245
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=87.78 E-value=4.5 Score=40.25 Aligned_cols=29 Identities=21% Similarity=0.214 Sum_probs=23.9
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+|+|+| +|.||.+...-+++. .++|.+..
T Consensus 2 ~I~IIG-~G~mG~sla~~L~~~--g~~V~~~d 30 (279)
T PRK07417 2 KIGIVG-LGLIGGSLGLDLRSL--GHTVYGVS 30 (279)
T ss_pred eEEEEe-ecHHHHHHHHHHHHC--CCEEEEEE
Confidence 699999 799999998888876 56777664
No 246
>PRK07985 oxidoreductase; Provisional
Probab=87.73 E-value=5.2 Score=39.69 Aligned_cols=66 Identities=12% Similarity=-0.002 Sum_probs=41.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC---CHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~---Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|+||.||.++.+-+.+. .++|+.+.-.. +.+.+.+..++...+... ..|-.+.+.+.+.
T Consensus 49 ~k~vlITGas~gIG~aia~~L~~~--G~~Vi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 118 (294)
T PRK07985 49 DRKALVTGGDSGIGRAAAIAYARE--GADVAISYLPVEEEDAQDVKKIIEECGRKAVLLPGDLSDEKFARSL 118 (294)
T ss_pred CCEEEEECCCCcHHHHHHHHHHHC--CCEEEEecCCcchhhHHHHHHHHHHcCCeEEEEEccCCCHHHHHHH
Confidence 378999999999999999999876 67887643222 234454444444433332 3454444444443
No 247
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=87.63 E-value=4.4 Score=42.50 Aligned_cols=110 Identities=20% Similarity=0.211 Sum_probs=66.2
Q ss_pred eeEEEEccCChHhHHHHHHHHh--CCCceEEEEEeccCCHHHHHHHHHh------hCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNITLLADQVKR------FKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~Nv~~L~~q~~~------f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
.||+|.|. |=||+..++++.+ +|++++|+|+---...+-++-+.+- |+. -|...+.. +.-.+
T Consensus 2 ~~IaInGf-GrIGR~~lr~l~e~~~~~~l~vvaind~~~~~~~ayll~ydS~hg~~~~-~v~~~~~~--------l~v~g 71 (336)
T PRK13535 2 IRVAINGF-GRIGRNVLRALYESGRRAEITVVAINELADAEGMAHLLKYDTSHGRFAW-DVRQERDQ--------LFVGD 71 (336)
T ss_pred eEEEEECc-CHHHHHHHHHHHhcCCCCceEEEEecCCCCHHHHHHHhhhccCCCCCCC-cEEecCCE--------EEECC
Confidence 48999999 9999999999876 4688999998655566766555431 211 11111110 00011
Q ss_pred CCcEEEechhhHHHhh-cCCCCCEEEEecccccCcHHHHHHHHcC-Ccccc
Q 012004 149 EKPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (473)
Q Consensus 149 ~~~~v~~G~egl~~la-~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G-K~IaL 197 (473)
..++++.. ....++- ...++|+|+.+.-++.--.-.-.++++| |+|-+
T Consensus 72 ~~i~v~~~-~~p~~~~w~~~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~i 121 (336)
T PRK13535 72 DAIRLLHE-RDIASLPWRELGVDVVLDCTGVYGSREDGEAHIAAGAKKVLF 121 (336)
T ss_pred EEEEEEEc-CCcccCcccccCCCEEEEccchhhhHHHHHHHHHcCCEEEEe
Confidence 12333322 2222221 1248999999987776666667788999 44444
No 248
>PRK06123 short chain dehydrogenase; Provisional
Probab=87.61 E-value=3.9 Score=38.37 Aligned_cols=82 Identities=18% Similarity=0.178 Sum_probs=47.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHHHhcCCCCcE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~l~~~~~~~~ 152 (473)
|.+.|.|+||.||....+-+.+. .+.|+ +...++-+.+.++ .+....+...+ .|-.+...+.+.+.
T Consensus 3 ~~~lVtG~~~~iG~~~a~~l~~~--G~~vv-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~~~~~~~------- 72 (248)
T PRK06123 3 KVMIITGASRGIGAATALLAAER--GYAVC-LNYLRNRDAAEAVVQAIRRQGGEALAVAADVADEADVLRLFE------- 72 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEE-EecCCCHHHHHHHHHHHHhCCCcEEEEEeccCCHHHHHHHHH-------
Confidence 57999999999999998888775 56665 4444555544433 33333333332 34444444444321
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ ....+|+||+..
T Consensus 73 ------~~~~--~~~~id~li~~a 88 (248)
T PRK06123 73 ------AVDR--ELGRLDALVNNA 88 (248)
T ss_pred ------HHHH--HhCCCCEEEECC
Confidence 0111 124688998874
No 249
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=87.60 E-value=3.5 Score=38.76 Aligned_cols=64 Identities=17% Similarity=0.153 Sum_probs=41.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH---hhCCCEE-EEeCcccHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK---RFKPQVV-AVRNESLLDEIKEAL 144 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~---~f~P~~v-~v~de~~~~~l~~~l 144 (473)
|+|.|.|+||.||....+-+.+. .++|+.+. +|-+.+.+... ...++.. ...|-.+...+++.+
T Consensus 5 ~~vlItG~sg~iG~~la~~l~~~--g~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~ 72 (258)
T PRK12429 5 KVALVTGAASGIGLEIALALAKE--GAKVVIAD--LNDEAAAAAAEALQKAGGKAIGVAMDVTDEEAINAGI 72 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHHHHHHhcCCcEEEEEcCCCCHHHHHHHH
Confidence 78999999999999999988775 67887763 44454444333 3344433 334555555555443
No 250
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=87.59 E-value=3.8 Score=39.41 Aligned_cols=92 Identities=20% Similarity=0.213 Sum_probs=59.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..+|.|.|++|++|..++.+.+.. .++|++++... +. .+.++++..+.+....+ .+.+.
T Consensus 143 g~~vlV~ga~g~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~----~~~~~------------ 201 (320)
T cd08243 143 GDTLLIRGGTSSVGLAALKLAKAL--GATVTATTRSP--ER-AALLKELGADEVVIDDG----AIAEQ------------ 201 (320)
T ss_pred CCEEEEEcCCChHHHHHHHHHHHc--CCEEEEEeCCH--HH-HHHHHhcCCcEEEecCc----cHHHH------------
Confidence 368999999999999999999987 57787765443 33 34556777666542211 11111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.++ ...+|+|++.+.| ..+...+..+..+-++
T Consensus 202 ----i~~~--~~~~d~vl~~~~~-~~~~~~~~~l~~~g~~ 234 (320)
T cd08243 202 ----LRAA--PGGFDKVLELVGT-ATLKDSLRHLRPGGIV 234 (320)
T ss_pred ----HHHh--CCCceEEEECCCh-HHHHHHHHHhccCCEE
Confidence 2222 2358999987665 5577777777665443
No 251
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=87.54 E-value=5.4 Score=37.23 Aligned_cols=42 Identities=19% Similarity=0.307 Sum_probs=30.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~ 122 (473)
+++.|.|++|.||..+...+.+. .++|+.+. ++-+.+.+.+.
T Consensus 6 ~~~lItG~~g~iG~~~a~~l~~~--G~~vi~~~--r~~~~~~~~~~ 47 (253)
T PRK08217 6 KVIVITGGAQGLGRAMAEYLAQK--GAKLALID--LNQEKLEEAVA 47 (253)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 68999999999999999999886 46776543 44454544443
No 252
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=87.33 E-value=3.4 Score=39.15 Aligned_cols=65 Identities=15% Similarity=0.106 Sum_probs=41.2
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH---HHhhCCCEEEE-eCcccHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ---VKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q---~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
..|++.|.|+||.||....+.+.++ .++|+.+. +|-+.+.+. +++...+...+ .|-.+...+...
T Consensus 10 ~~k~ilItGas~~IG~~la~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 78 (256)
T PRK06124 10 AGQVALVTGSARGLGFEIARALAGA--GAHVLVNG--RNAATLEAAVAALRAAGGAAEALAFDIADEEAVAAA 78 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--CCHHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 3578999999999999999998876 67877653 344444443 33444444333 344444444443
No 253
>PLN00016 RNA-binding protein; Provisional
Probab=87.31 E-value=0.66 Score=47.63 Aligned_cols=36 Identities=17% Similarity=0.214 Sum_probs=30.5
Q ss_pred CCCeeEEEE----ccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 74 DGPKPISVL----GSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 74 ~~~k~I~IL----GSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
.++++|.|+ |+||+||.....-+.+. .++|++++-+
T Consensus 50 ~~~~~VLVt~~~~GatG~iG~~lv~~L~~~--G~~V~~l~R~ 89 (378)
T PLN00016 50 VEKKKVLIVNTNSGGHAFIGFYLAKELVKA--GHEVTLFTRG 89 (378)
T ss_pred cccceEEEEeccCCCceeEhHHHHHHHHHC--CCEEEEEecC
Confidence 445789999 99999999999988765 6899998854
No 254
>PRK14982 acyl-ACP reductase; Provisional
Probab=87.18 E-value=1.3 Score=46.54 Aligned_cols=47 Identities=15% Similarity=0.278 Sum_probs=32.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|+|.|+|+|||||.....-+.+...-.+|+.+ +++.+.+.+.+.++
T Consensus 155 ~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv--~R~~~rl~~La~el 201 (340)
T PRK14982 155 KATVAVVGATGDIGSAVCRWLDAKTGVAELLLV--ARQQERLQELQAEL 201 (340)
T ss_pred CCEEEEEccChHHHHHHHHHHHhhCCCCEEEEE--cCCHHHHHHHHHHh
Confidence 378999999999999999999743111233322 46677777666655
No 255
>PRK06484 short chain dehydrogenase; Validated
Probab=87.11 E-value=4.9 Score=42.70 Aligned_cols=64 Identities=22% Similarity=0.284 Sum_probs=45.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
.|.+.|.|+|+-||..+.+-+.++ .++|+.+ .++.+.+.+..++...+...+ .|-.+.+.+++.
T Consensus 5 ~k~~lITGas~gIG~aia~~l~~~--G~~V~~~--~r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 69 (520)
T PRK06484 5 SRVVLVTGAAGGIGRAACQRFARA--GDQVVVA--DRNVERARERADSLGPDHHALAMDVSDEAQIREG 69 (520)
T ss_pred CeEEEEECCCcHHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHhCCceeEEEeccCCHHHHHHH
Confidence 378999999999999999999886 5677665 356788888777776554333 344444444443
No 256
>PRK08251 short chain dehydrogenase; Provisional
Probab=87.08 E-value=6.6 Score=36.94 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=30.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
.|++.|.|+||.||....+-+.+.. .+|+.++ +|.+.+.+.
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g--~~v~~~~--r~~~~~~~~ 42 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKG--RDLALCA--RRTDRLEEL 42 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcC--CEEEEEe--CCHHHHHHH
Confidence 4689999999999999999998874 5666553 445554433
No 257
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.07 E-value=4.7 Score=40.21 Aligned_cols=93 Identities=14% Similarity=0.079 Sum_probs=57.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEeCc-ccHHHHHHHHhcCCCCcEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~-f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v~ 154 (473)
++|.|.|++|.+|..++.+.+.. ..+|++.+.. -++ .+.+++ +..+.+.-.++ .. +.+.
T Consensus 153 ~~VlI~Ga~G~vG~~aiqlAk~~--G~~Vi~~~~~--~~~-~~~~~~~lGa~~vi~~~~~~~---~~~~----------- 213 (338)
T cd08295 153 ETVFVSAASGAVGQLVGQLAKLK--GCYVVGSAGS--DEK-VDLLKNKLGFDDAFNYKEEPD---LDAA----------- 213 (338)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHhcCCceeEEcCCccc---HHHH-----------
Confidence 68999999999999999999987 5678776532 233 334444 66666543221 11 1111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.++.. ..+|+|++.+.| ..+...+.+++.+-++
T Consensus 214 -----i~~~~~-~gvd~v~d~~g~-~~~~~~~~~l~~~G~i 247 (338)
T cd08295 214 -----LKRYFP-NGIDIYFDNVGG-KMLDAVLLNMNLHGRI 247 (338)
T ss_pred -----HHHhCC-CCcEEEEECCCH-HHHHHHHHHhccCcEE
Confidence 112222 358999997654 5566666666655443
No 258
>PRK05876 short chain dehydrogenase; Provisional
Probab=87.05 E-value=6.3 Score=38.60 Aligned_cols=64 Identities=19% Similarity=0.139 Sum_probs=41.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~-v~de~~~~~l~~~ 143 (473)
.|.+.|.|+||.||....+-+.+. .++|+.. .+|.+.+.+.+.++ ..+... ..|-.+...+++.
T Consensus 6 ~k~vlVTGas~gIG~ala~~La~~--G~~Vv~~--~r~~~~l~~~~~~l~~~~~~~~~~~~Dv~d~~~v~~~ 73 (275)
T PRK05876 6 GRGAVITGGASGIGLATGTEFARR--GARVVLG--DVDKPGLRQAVNHLRAEGFDVHGVMCDVRHREEVTHL 73 (275)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHH
Confidence 468999999999999999988876 5677653 35566666555444 223222 2454444445443
No 259
>PRK07831 short chain dehydrogenase; Provisional
Probab=87.02 E-value=7 Score=37.36 Aligned_cols=41 Identities=27% Similarity=0.270 Sum_probs=29.8
Q ss_pred CeeEEEEccCCh-HhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 76 PKPISVLGSTGS-IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 76 ~k~I~ILGSTGS-IG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
.|++.|.|+||| ||......+.+. .++|+... +|.+.+.+.
T Consensus 17 ~k~vlItG~sg~gIG~~ia~~l~~~--G~~V~~~~--~~~~~~~~~ 58 (262)
T PRK07831 17 GKVVLVTAAAGTGIGSATARRALEE--GARVVISD--IHERRLGET 58 (262)
T ss_pred CCEEEEECCCcccHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHH
Confidence 478999999996 999999998876 46666543 455544443
No 260
>PLN02206 UDP-glucuronate decarboxylase
Probab=86.91 E-value=0.74 Score=49.19 Aligned_cols=31 Identities=19% Similarity=0.343 Sum_probs=27.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+||.|.|+||+||...++-+.+. .++|+++.
T Consensus 120 ~kILVTGatGfIGs~Lv~~Ll~~--G~~V~~ld 150 (442)
T PLN02206 120 LRVVVTGGAGFVGSHLVDRLMAR--GDSVIVVD 150 (442)
T ss_pred CEEEEECcccHHHHHHHHHHHHC--cCEEEEEe
Confidence 68999999999999999988875 68899875
No 261
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=86.91 E-value=7.7 Score=38.92 Aligned_cols=65 Identities=11% Similarity=0.222 Sum_probs=41.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC---CCEEEE-eCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK---PQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~---P~~v~v-~de~~~~~l~~~ 143 (473)
.|.+.|.|+|+.||.++..-+.+.. .++|+.++ +|.+.+.+.+++.. .+...+ .|-.+...++..
T Consensus 3 ~k~vlITGas~GIG~aia~~L~~~G-~~~V~l~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 71 (314)
T TIGR01289 3 KPTVIITGASSGLGLYAAKALAATG-EWHVIMAC--RDFLKAEQAAKSLGMPKDSYTIMHLDLGSLDSVRQF 71 (314)
T ss_pred CCEEEEECCCChHHHHHHHHHHHcC-CCEEEEEe--CCHHHHHHHHHHhcCCCCeEEEEEcCCCCHHHHHHH
Confidence 4689999999999999998888763 17776653 56666665555542 222222 455555555543
No 262
>PRK07062 short chain dehydrogenase; Provisional
Probab=86.85 E-value=5.2 Score=38.22 Aligned_cols=42 Identities=21% Similarity=0.249 Sum_probs=30.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
.|.+.|.|+||.||.....-+.+. .++|+.++ +|.+.+.+..
T Consensus 8 ~k~~lItGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~ 49 (265)
T PRK07062 8 GRVAVVTGGSSGIGLATVELLLEA--GASVAICG--RDEERLASAE 49 (265)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCeEEEEe--CCHHHHHHHH
Confidence 378999999999999999888875 66776543 4555554433
No 263
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=86.69 E-value=3.9 Score=39.97 Aligned_cols=92 Identities=14% Similarity=0.138 Sum_probs=57.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|+ |.||..++.+.+.. .++ |++. .++-+++ +.++++..+.+.-.+ +...
T Consensus 122 ~~VlV~G~-G~vG~~~~~~ak~~--G~~~Vi~~--~~~~~r~-~~a~~~Ga~~~i~~~-~~~~----------------- 177 (280)
T TIGR03366 122 RRVLVVGA-GMLGLTAAAAAAAA--GAARVVAA--DPSPDRR-ELALSFGATALAEPE-VLAE----------------- 177 (280)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEE--CCCHHHH-HHHHHcCCcEecCch-hhHH-----------------
Confidence 58999987 99999999999887 555 5554 3344454 567888876544211 1111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.++.....+|+|+++..+-..+.-.+..++.|-++
T Consensus 178 ---~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~i 214 (280)
T TIGR03366 178 ---RQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTA 214 (280)
T ss_pred ---HHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEE
Confidence 1122222235899999876555666667777665443
No 264
>PRK06484 short chain dehydrogenase; Validated
Probab=86.62 E-value=8.4 Score=40.91 Aligned_cols=65 Identities=14% Similarity=0.209 Sum_probs=45.6
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE-eCcccHHHHHHH
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
..|.+.|.|+||-||..+.+-+.+. .++|+.+. +|.+.+.+...+...+...+ .|-.+.+.+++.
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~ 333 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAA--GDRLLIID--RDAEGAKKLAEALGDEHLSVQADITDEAAVESA 333 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHhCCceeEEEccCCCHHHHHHH
Confidence 3478999999999999999888876 56787653 66777777777766555433 444444444443
No 265
>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase. L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found
Probab=86.59 E-value=13 Score=38.81 Aligned_cols=195 Identities=16% Similarity=0.186 Sum_probs=92.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCc-eEEEEEeccCCHHHHHHHHHhh--------CCCEEEEeC---cccHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDK-FRVVALAAGSNITLLADQVKRF--------KPQVVAVRN---ESLLDEIKEAL 144 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~-f~VvaLaa~~Nv~~L~~q~~~f--------~P~~v~v~d---e~~~~~l~~~l 144 (473)
.+|.|+|++|.||..++.+.+..--. -+|++.. ++-+++ +.++++ ..+...+.. ++..+.+++..
T Consensus 177 ~~VlV~G~~G~vG~~aiq~ak~~G~g~~~Vi~~~--~~~~r~-~~a~~~~~~~~~~~Ga~~~~i~~~~~~~~~~~v~~~t 253 (410)
T cd08238 177 GNTAILGGAGPMGLMAIDYAIHGPIGPSLLVVTD--VNDERL-ARAQRLFPPEAASRGIELLYVNPATIDDLHATLMELT 253 (410)
T ss_pred CEEEEEeCCCHHHHHHHHHHHhcccCCceEEEEc--CCHHHH-HHHHHhccccccccCceEEEECCCccccHHHHHHHHh
Confidence 58999999999999999999875211 2566654 333443 345554 223223321 12223344433
Q ss_pred hcCCCCcEE-Eec-hhhHHHhhcCC--CCCEEEEeccccc-C-cHHHHHHHHcCCcccccccceeeec---cc-----cc
Q 012004 145 ANVEEKPEI-LAG-EQGVIEAARHP--DAVTVVTGIVGCA-G-LKPTVAAIEAGKDIALANKETLIAG---GP-----FV 210 (473)
Q Consensus 145 ~~~~~~~~v-~~G-~egl~~la~~~--~~D~Vv~AIvG~a-G-L~ptl~Ai~~GK~IaLANKESLV~a---G~-----li 210 (473)
.+.+.+.-+ ..| ...+.+..... .--+|+. .|.. + ....+..- .+-.||.-+.| |. -+
T Consensus 254 ~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~--~g~~~~~~~~~~~~~------~~~~~~~~i~g~~~~~~~~~~~~ 325 (410)
T cd08238 254 GGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFF--AGPVDKNFSAPLNFY------NVHYNNTHYVGTSGGNTDDMKEA 325 (410)
T ss_pred CCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEE--EccCCCCccccccHH------HhhhcCcEEEEeCCCCHHHHHHH
Confidence 221211111 122 23333222211 1223332 1211 1 00000000 12223433333 11 24
Q ss_pred hHHHhhcCC-------eEeecccchhhHHHhhcCCCCCccceEEEEecCCCCCCCChhhhhcCCHHHHhcCCCCCCCccc
Q 012004 211 LPLAHKHNI-------KILPADSEHSAIFQCIQGLPEGALRRIILTASGGAFRDWPVEKLKEVKVADALKHPNWSMGKKI 283 (473)
Q Consensus 211 ~~~a~~~~~-------~IlPVDSEHsAIfQcL~g~~~~~v~kiiLTASGGPFr~~~~e~L~~vT~~~ALkHPnW~MG~KI 283 (473)
++++.+... ..+|.|.-..| |+.+.+. ..-|++|+ |+|.+++++....- -+-|+=. .|+
T Consensus 326 ~~li~~g~i~~~~~it~~~~l~~~~~A-~~~~~~~---~~gKvvl~----~~~~~~~~~~~~~~----~~~~~~~--~~~ 391 (410)
T cd08238 326 IDLMAAGKLNPARMVTHIGGLNAAAET-TLNLPGI---PGGKKLIY----TQKPLPLTGIEELA----DKEPEEP--AAI 391 (410)
T ss_pred HHHHHcCCCchhhcEEEEecHHHHHHH-HHHhhcc---CCceEEEE----CCCCCCCchhHhhH----hhcCCCh--HHH
Confidence 455554443 23566654444 5656532 24578887 68888877665433 2334422 688
Q ss_pred ccchhhhhhhhHH
Q 012004 284 TVDSATLFNKGLE 296 (473)
Q Consensus 284 TIDSATmmNKgLE 296 (473)
-+|-..+-||--|
T Consensus 392 ~~~~~~~~~~~~~ 404 (410)
T cd08238 392 VLENGGIWNKEAE 404 (410)
T ss_pred HHhcCCcCCHHHH
Confidence 8999999998544
No 266
>PRK07677 short chain dehydrogenase; Provisional
Probab=86.53 E-value=6.7 Score=37.26 Aligned_cols=41 Identities=20% Similarity=0.233 Sum_probs=30.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
|++.|.|+||.||......+.+. ..+|+.+. +|.+.+.+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~--G~~Vi~~~--r~~~~~~~~~ 42 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEE--GANVVITG--RTKEKLEEAK 42 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHH
Confidence 68999999999999999999876 55776653 4444444433
No 267
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=86.53 E-value=0.83 Score=50.89 Aligned_cols=33 Identities=24% Similarity=0.459 Sum_probs=28.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
++|.|.|+||+||+...+-+.++ ..++|+++.-
T Consensus 316 ~~VLVTGatGFIGs~Lv~~Ll~~-~g~~V~~l~r 348 (660)
T PRK08125 316 TRVLILGVNGFIGNHLTERLLRD-DNYEVYGLDI 348 (660)
T ss_pred CEEEEECCCchHHHHHHHHHHhC-CCcEEEEEeC
Confidence 57999999999999999988764 2599999974
No 268
>COG3320 Putative dehydrogenase domain of multifunctional non-ribosomal peptide synthetases and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=86.50 E-value=2.7 Score=44.96 Aligned_cols=83 Identities=24% Similarity=0.347 Sum_probs=50.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC-HHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN-ITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N-v~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.+-|+||++|.--+.=.-..++ .+|++|.=.+| -..+.+..+.|. .+..+++... .+++++.
T Consensus 1 ~~vlLTGATGFLG~yLl~eLL~~~~-~kv~cLVRA~s~E~a~~RL~~~~~----------~~~~~~e~~~---~ri~vv~ 66 (382)
T COG3320 1 RNVLLTGATGFLGAYLLLELLDRSD-AKVICLVRAQSDEAALARLEKTFD----------LYRHWDELSA---DRVEVVA 66 (382)
T ss_pred CeEEEecCchHhHHHHHHHHHhcCC-CcEEEEEecCCHHHHHHHHHHHhh----------hhhhhhhhhc---ceEEEEe
Confidence 4789999999999766554444445 99999987666 233333444443 2333444332 2467777
Q ss_pred chhh----------HHHhhcCCCCCEEEEe
Q 012004 156 GEQG----------VIEAARHPDAVTVVTG 175 (473)
Q Consensus 156 G~eg----------l~~la~~~~~D~Vv~A 175 (473)
|+-+ -.++++ .+|+|+-.
T Consensus 67 gDl~e~~lGL~~~~~~~La~--~vD~I~H~ 94 (382)
T COG3320 67 GDLAEPDLGLSERTWQELAE--NVDLIIHN 94 (382)
T ss_pred cccccccCCCCHHHHHHHhh--hcceEEec
Confidence 7744 234443 48888865
No 269
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=86.47 E-value=0.82 Score=48.76 Aligned_cols=31 Identities=23% Similarity=0.364 Sum_probs=27.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+||.|.|+||+||.+.++-+.+. .++|+++.
T Consensus 121 mkILVTGatGFIGs~Lv~~Ll~~--G~~V~~ld 151 (436)
T PLN02166 121 LRIVVTGGAGFVGSHLVDKLIGR--GDEVIVID 151 (436)
T ss_pred CEEEEECCccHHHHHHHHHHHHC--CCEEEEEe
Confidence 57999999999999999988775 68999886
No 270
>PRK08264 short chain dehydrogenase; Validated
Probab=86.44 E-value=5.2 Score=37.40 Aligned_cols=39 Identities=21% Similarity=0.233 Sum_probs=28.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLA 118 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~ 118 (473)
.|+|.|.|+||.||.....-+.+. .. +|+.++ ++.+.+.
T Consensus 6 ~~~vlItGgsg~iG~~la~~l~~~--G~~~V~~~~--r~~~~~~ 45 (238)
T PRK08264 6 GKVVLVTGANRGIGRAFVEQLLAR--GAAKVYAAA--RDPESVT 45 (238)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CcccEEEEe--cChhhhh
Confidence 368999999999999999988876 44 555443 4555544
No 271
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=86.42 E-value=5.6 Score=39.34 Aligned_cols=93 Identities=15% Similarity=0.125 Sum_probs=57.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCc-ccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|++|+||..++.+.+.. ..+|++.+. +-++ .+.++++..+.+.-.++ +...+.
T Consensus 140 ~~VLI~ga~g~vG~~aiqlAk~~--G~~Vi~~~~--s~~~-~~~~~~lGa~~vi~~~~~~~~~~~--------------- 199 (325)
T TIGR02825 140 ETVMVNAAAGAVGSVVGQIAKLK--GCKVVGAAG--SDEK-VAYLKKLGFDVAFNYKTVKSLEET--------------- 199 (325)
T ss_pred CEEEEeCCccHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCCCEEEeccccccHHHH---------------
Confidence 58999999999999999999986 457777653 2333 34557788776654332 121111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.++ ....+|+|++++-| ..+...+..++.|-++
T Consensus 200 ----~~~~-~~~gvdvv~d~~G~-~~~~~~~~~l~~~G~i 233 (325)
T TIGR02825 200 ----LKKA-SPDGYDCYFDNVGG-EFSNTVIGQMKKFGRI 233 (325)
T ss_pred ----HHHh-CCCCeEEEEECCCH-HHHHHHHHHhCcCcEE
Confidence 1111 12358999997654 4455566666555443
No 272
>PLN02650 dihydroflavonol-4-reductase
Probab=86.41 E-value=0.84 Score=45.96 Aligned_cols=33 Identities=24% Similarity=0.346 Sum_probs=28.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.|+|.|.|+||+||....+-+.+. .++|+++.-
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~--G~~V~~~~r 37 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLER--GYTVRATVR 37 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHC--CCEEEEEEc
Confidence 368999999999999999988875 678988763
No 273
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=86.30 E-value=7.5 Score=41.21 Aligned_cols=106 Identities=22% Similarity=0.297 Sum_probs=81.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
-||.|+.-++++=+---+++...|+ .+|++.+ .|-....+++++++|+.+.+..|- -+.-|
T Consensus 2 irVlvVddsal~R~~i~~~l~~~~~-i~vv~~a--~ng~~a~~~~~~~~PDVi~ld~em----------------p~mdg 62 (350)
T COG2201 2 IRVLVVDDSALMRKVISDILNSDPD-IEVVGTA--RNGREAIDKVKKLKPDVITLDVEM----------------PVMDG 62 (350)
T ss_pred cEEEEEcCcHHHHHHHHHHHhcCCC-eEEEEec--CCHHHHHHHHHhcCCCEEEEeccc----------------ccccH
Confidence 4799999999998888899988875 6788776 567888999999999999985431 13346
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccce
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKET 202 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKES 202 (473)
-+.|.++.+....-+|+..-.+--|-.-|+.|++.|.- -.-.|++
T Consensus 63 l~~l~~im~~~p~pVimvsslt~~g~~~t~~al~~gAv-D~i~kp~ 107 (350)
T COG2201 63 LEALRKIMRLRPLPVIMVSSLTEEGAEATLEALELGAV-DFIAKPS 107 (350)
T ss_pred HHHHHHHhcCCCCcEEEEeccccccHHHHHHHHhcCcc-eeecCCC
Confidence 66677766666677777777888899999999999943 3334444
No 274
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=86.27 E-value=6 Score=38.16 Aligned_cols=44 Identities=20% Similarity=0.190 Sum_probs=31.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
.|.+.|.|+||.||.....-+.+. .++|+.+. +|-+.+.+...+
T Consensus 10 ~k~vlVtGas~giG~~ia~~l~~~--G~~V~~~~--r~~~~~~~~~~~ 53 (278)
T PRK08277 10 GKVAVITGGGGVLGGAMAKELARA--GAKVAILD--RNQEKAEAVVAE 53 (278)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 378999999999999999998876 56776553 444544444433
No 275
>PRK06198 short chain dehydrogenase; Provisional
Probab=86.18 E-value=2.9 Score=39.61 Aligned_cols=63 Identities=19% Similarity=0.180 Sum_probs=37.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHH---HHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLA---DQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~---~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
.|+|.|.|+||.||.+..+.+.+. ..+ |+.+ .+ +.+.+. +.+++...+...+ .|-...+.+++
T Consensus 6 ~k~vlItGa~g~iG~~la~~l~~~--G~~~V~~~-~r-~~~~~~~~~~~l~~~~~~~~~~~~D~~~~~~~~~ 73 (260)
T PRK06198 6 GKVALVTGGTQGLGAAIARAFAER--GAAGLVIC-GR-NAEKGEAQAAELEALGAKAVFVQADLSDVEDCRR 73 (260)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHC--CCCeEEEE-cC-CHHHHHHHHHHHHhcCCeEEEEEccCCCHHHHHH
Confidence 378999999999999999999876 455 5543 33 333333 3344444343322 34444444444
No 276
>KOG4777 consensus Aspartate-semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=86.12 E-value=0.53 Score=48.34 Aligned_cols=31 Identities=32% Similarity=0.677 Sum_probs=26.4
Q ss_pred eeEE-EEccCChHhHHHHHHHHhCCCceEEEEE
Q 012004 77 KPIS-VLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (473)
Q Consensus 77 k~I~-ILGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (473)
|+++ |||+||++|+--+.++..||. |++--|
T Consensus 4 kk~a~vlGaTGaVGQrFi~lLsdhP~-f~ikvL 35 (361)
T KOG4777|consen 4 KKSAPVLGATGAVGQRFISLLSDHPY-FSIKVL 35 (361)
T ss_pred ccccceeeccchhHHHHHHHhccCCc-ceeeee
Confidence 5666 999999999999999999986 666655
No 277
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.98 E-value=4.9 Score=40.07 Aligned_cols=65 Identities=20% Similarity=0.147 Sum_probs=40.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc--CCHHHHHHHHHhhCCCEEEE-eCcccHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--SNITLLADQVKRFKPQVVAV-RNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--~Nv~~L~~q~~~f~P~~v~v-~de~~~~~l~~ 142 (473)
.|++.|.|++|.||.....-+.+. ..+|+...-+ ...+.+.++++....+.+.+ .|-.+.+.+.+
T Consensus 12 ~k~~lVTGas~gIG~~ia~~L~~~--Ga~Vv~~~~~~~~~~~~~~~~i~~~g~~~~~~~~Dv~d~~~~~~ 79 (306)
T PRK07792 12 GKVAVVTGAAAGLGRAEALGLARL--GATVVVNDVASALDASDVLDEIRAAGAKAVAVAGDISQRATADE 79 (306)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCEEEEecCCchhHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHH
Confidence 368999999999999998888876 4566654322 23445556666555554443 34333333433
No 278
>PLN02686 cinnamoyl-CoA reductase
Probab=85.90 E-value=4.7 Score=41.58 Aligned_cols=34 Identities=18% Similarity=0.307 Sum_probs=28.9
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
..+|+|.|.|+||+||....+-+.+. .++|++++
T Consensus 51 ~~~k~VLVTGatGfIG~~lv~~L~~~--G~~V~~~~ 84 (367)
T PLN02686 51 AEARLVCVTGGVSFLGLAIVDRLLRH--GYSVRIAV 84 (367)
T ss_pred CCCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEe
Confidence 45689999999999999999988775 68888765
No 279
>PRK05884 short chain dehydrogenase; Provisional
Probab=85.66 E-value=5 Score=38.01 Aligned_cols=60 Identities=15% Similarity=0.218 Sum_probs=41.1
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
|+.|.|+||.||......+.+. .++|+.+ .+|.+.+.+.+++.+...+ ..|-.+...+++
T Consensus 2 ~vlItGas~giG~~ia~~l~~~--g~~v~~~--~r~~~~~~~~~~~~~~~~~-~~D~~~~~~v~~ 61 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRND--GHKVTLV--GARRDDLEVAAKELDVDAI-VCDNTDPASLEE 61 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHC--CCEEEEE--eCCHHHHHHHHHhccCcEE-ecCCCCHHHHHH
Confidence 6999999999999999988765 5677765 4567777766666544333 344444444444
No 280
>PRK08703 short chain dehydrogenase; Provisional
Probab=85.58 E-value=1.9 Score=40.53 Aligned_cols=43 Identities=23% Similarity=0.247 Sum_probs=32.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
|++.|+|+||.||....+.+.++ .++|+.++ +|.+.+.+...+
T Consensus 7 k~vlItG~sggiG~~la~~l~~~--g~~V~~~~--r~~~~~~~~~~~ 49 (239)
T PRK08703 7 KTILVTGASQGLGEQVAKAYAAA--GATVILVA--RHQKKLEKVYDA 49 (239)
T ss_pred CEEEEECCCCcHHHHHHHHHHHc--CCEEEEEe--CChHHHHHHHHH
Confidence 78999999999999999999876 57777664 455555554443
No 281
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.53 E-value=6.5 Score=37.96 Aligned_cols=65 Identities=22% Similarity=0.207 Sum_probs=40.3
Q ss_pred CeeEEEEcc--CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCE-EEEeCcccHHHHHH
Q 012004 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQV-VAVRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGS--TGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~-v~v~de~~~~~l~~ 142 (473)
.|.++|.|+ ++-||..+..-+.+. ..+|+...-+++.+.+.+.+.++..+. ....|-.+.+.+++
T Consensus 7 ~k~~lItGa~~s~GIG~a~a~~la~~--G~~v~l~~r~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~i~~ 74 (256)
T PRK07889 7 GKRILVTGVITDSSIAFHVARVAQEQ--GAEVVLTGFGRALRLTERIAKRLPEPAPVLELDVTNEEHLAS 74 (256)
T ss_pred CCEEEEeCCCCcchHHHHHHHHHHHC--CCEEEEecCccchhHHHHHHHhcCCCCcEEeCCCCCHHHHHH
Confidence 378999999 899999999888775 567765443344555555555554332 22245444444443
No 282
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=85.51 E-value=2.8 Score=39.60 Aligned_cols=32 Identities=28% Similarity=0.328 Sum_probs=27.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|++.|.|+||.||.+...-+.+. .++|+++.
T Consensus 12 ~k~vlItG~~g~iG~~la~~l~~~--G~~Vi~~~ 43 (247)
T PRK08945 12 DRIILVTGAGDGIGREAALTYARH--GATVILLG 43 (247)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCcEEEEe
Confidence 478999999999999999999875 67888764
No 283
>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.
Probab=85.44 E-value=7.3 Score=37.84 Aligned_cols=89 Identities=16% Similarity=0.247 Sum_probs=54.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..++.|.|+||++|..+..+.+.. .++|++++ ++-+. .+.++++..+.+. +... +.+.+
T Consensus 163 ~~~vlI~ga~g~vG~~~~~~a~~~--g~~v~~~~--~~~~~-~~~~~~~~~~~~~--~~~~---~~~~~----------- 221 (332)
T cd08259 163 GDTVLVTGAGGGVGIHAIQLAKAL--GARVIAVT--RSPEK-LKILKELGADYVI--DGSK---FSEDV----------- 221 (332)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHc--CCeEEEEe--CCHHH-HHHHHHcCCcEEE--ecHH---HHHHH-----------
Confidence 358999999999999999999987 57777765 23333 3344555543332 1111 22221
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
.+ ..++|+|++.+. ...+...+.++..+-+
T Consensus 222 -----~~---~~~~d~v~~~~g-~~~~~~~~~~~~~~g~ 251 (332)
T cd08259 222 -----KK---LGGADVVIELVG-SPTIEESLRSLNKGGR 251 (332)
T ss_pred -----Hh---ccCCCEEEECCC-hHHHHHHHHHhhcCCE
Confidence 11 115899998754 4456666766655433
No 284
>PRK07775 short chain dehydrogenase; Provisional
Probab=85.26 E-value=5 Score=38.96 Aligned_cols=64 Identities=23% Similarity=0.217 Sum_probs=40.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~---f~P~~v~-v~de~~~~~l~~~ 143 (473)
+|.+.|.|+||.||..+.+-+.+. .++|+.++ +|.+.+.+...+ ...+... -.|-.+...+.+.
T Consensus 10 ~~~vlVtGa~g~iG~~la~~L~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 77 (274)
T PRK07775 10 RRPALVAGASSGIGAATAIELAAA--GFPVALGA--RRVEKCEELVDKIRADGGEAVAFPLDVTDPDSVKSF 77 (274)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEECCCCCHHHHHHH
Confidence 368999999999999999988876 57777654 345555444333 2333322 2354444455443
No 285
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=85.23 E-value=6.5 Score=39.37 Aligned_cols=95 Identities=15% Similarity=0.129 Sum_probs=59.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEE-EEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRV-VALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~V-vaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|+|+ |++|..++.+.+.. ..++ +++ .++-+++. .++++..+.+.-.++....++.+
T Consensus 161 g~~vlV~G~-g~vG~~~~~~a~~~--G~~~v~~~--~~~~~~~~-~~~~~Ga~~~i~~~~~~~~~~~~------------ 222 (347)
T PRK10309 161 GKNVIIIGA-GTIGLLAIQCAVAL--GAKSVTAI--DINSEKLA-LAKSLGAMQTFNSREMSAPQIQS------------ 222 (347)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEE--CCCHHHHH-HHHHcCCceEecCcccCHHHHHH------------
Confidence 368999985 99999999999987 4553 333 33445544 45778776554322222222222
Q ss_pred echhhHHHhhcCCCCC-EEEEecccccCcHHHHHHHHcCCccc
Q 012004 155 AGEQGVIEAARHPDAV-TVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 155 ~G~egl~~la~~~~~D-~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.....+| +|++++-|-..+.-.+.+++.|-++.
T Consensus 223 --------~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv 257 (347)
T PRK10309 223 --------VLRELRFDQLILETAGVPQTVELAIEIAGPRAQLA 257 (347)
T ss_pred --------HhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEE
Confidence 22223466 88888766556677778888776643
No 286
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=85.19 E-value=6.5 Score=37.55 Aligned_cols=65 Identities=15% Similarity=0.171 Sum_probs=40.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~---~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|++.|.|++|.||....+.+.+. ..+|+. .+.++.+.+.++. +....+... ..|-.+...+++.
T Consensus 7 ~k~~lItGa~~gIG~~ia~~l~~~--G~~vvi-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~i~~~ 75 (261)
T PRK08936 7 GKVVVITGGSTGLGRAMAVRFGKE--KAKVVI-NYRSDEEEANDVAEEIKKAGGEAIAVKGDVTVESDVVNL 75 (261)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCEEEE-EeCCCHHHHHHHHHHHHHcCCeEEEEEecCCCHHHHHHH
Confidence 478999999999999999988876 466664 4555555444433 333333322 2344444444443
No 287
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=85.19 E-value=6.9 Score=39.31 Aligned_cols=95 Identities=15% Similarity=0.145 Sum_probs=57.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.| +|++|..++.+.+.. .. +|++.+. +-+.+ ++++++.-+.+.-.++.....+.
T Consensus 178 g~~vlI~g-~g~vG~~~~~lak~~--G~~~v~~~~~--~~~~~-~~~~~~g~~~vi~~~~~~~~~~~------------- 238 (361)
T cd08231 178 GDTVVVQG-AGPLGLYAVAAAKLA--GARRVIVIDG--SPERL-ELAREFGADATIDIDELPDPQRR------------- 238 (361)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEcC--CHHHH-HHHHHcCCCeEEcCcccccHHHH-------------
Confidence 35799998 599999999999986 45 6666643 33333 45567776554432222111111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.+.++.....+|+|++.+-|...+...+..++.+
T Consensus 239 ---~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~ 273 (361)
T cd08231 239 ---AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRG 273 (361)
T ss_pred ---HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccC
Confidence 12333333346899999865545566666666544
No 288
>TIGR02685 pter_reduc_Leis pteridine reductase. Pteridine reductase is an enzyme used by trypanosomatids (including Trypanosoma cruzi and Leishmania major) to obtain reduced pteridines by salvage rather than biosynthetic pathways. Enzymes in T. cruzi described as pteridine reductase 1 (PTR1) and pteridine reductase 2 (PTR2) have different activity profiles. PTR1 is more active with with fully oxidized biopterin and folate than with reduced forms, while PTR2 reduces dihydrobiopterin and dihydrofolate but not oxidized pteridines. T. cruzi PTR1 and PTR2 are more similar to each other in sequence than either is to the pteridine reductase of Leishmania major, and all are included in this family.
Probab=85.14 E-value=6.8 Score=37.70 Aligned_cols=45 Identities=16% Similarity=0.190 Sum_probs=33.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+.+.|.|+||.||..+.+-+.+. .++|+.+ ++++-+.+.+...++
T Consensus 2 ~~~lITGas~gIG~~~a~~l~~~--G~~V~~~-~~~~~~~~~~~~~~l 46 (267)
T TIGR02685 2 PAAVVTGAAKRIGSSIAVALHQE--GYRVVLH-YHRSAAAASTLAAEL 46 (267)
T ss_pred CEEEEeCCCCcHHHHHHHHHHhC--CCeEEEE-cCCcHHHHHHHHHHH
Confidence 46899999999999999998875 6777765 455556655554444
No 289
>PLN00198 anthocyanidin reductase; Provisional
Probab=85.07 E-value=1.4 Score=44.14 Aligned_cols=34 Identities=21% Similarity=0.417 Sum_probs=28.6
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.+|+|.|.|+||+||+...+-+.+. .++|+++.-
T Consensus 8 ~~~~vlItG~~GfIG~~l~~~L~~~--g~~V~~~~r 41 (338)
T PLN00198 8 GKKTACVIGGTGFLASLLIKLLLQK--GYAVNTTVR 41 (338)
T ss_pred CCCeEEEECCchHHHHHHHHHHHHC--CCEEEEEEC
Confidence 3578999999999999999988875 678887763
No 290
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.05 E-value=3.9 Score=38.14 Aligned_cols=43 Identities=16% Similarity=0.192 Sum_probs=32.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVK 122 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~ 122 (473)
.|+|.|.|+||.||....+.+.+. .++|++++ ++-+.+.+..+
T Consensus 5 ~~~vlItGa~g~iG~~~a~~l~~~--G~~V~~~~--r~~~~~~~~~~ 47 (238)
T PRK05786 5 GKKVAIIGVSEGLGYAVAYFALKE--GAQVCINS--RNENKLKRMKK 47 (238)
T ss_pred CcEEEEECCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHH
Confidence 368999999999999999998875 67888764 33455544433
No 291
>PRK05855 short chain dehydrogenase; Validated
Probab=84.99 E-value=7.7 Score=40.98 Aligned_cols=85 Identities=22% Similarity=0.106 Sum_probs=50.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh---hCCCEEE-EeCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR---FKPQVVA-VRNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~---f~P~~v~-v~de~~~~~l~~~l~~~~~~~ 151 (473)
.+++.|.|+||.||.++.+-+.+. .++|+.++ +|.+.+.+.+.+ ...+... -.|-.+...+++.+.
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~------ 384 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFARE--GAEVVASD--IDEAAAERTAELIRAAGAVAHAYRVDVSDADAMEAFAE------ 384 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEEcCCCCHHHHHHHHH------
Confidence 368999999999999999998875 66766553 456665554443 3333222 244444444444321
Q ss_pred EEEechhhHHHhhcCCCCCEEEEeccccc
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGIVGCA 180 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AIvG~a 180 (473)
.+. .....+|+||+.. |..
T Consensus 385 -------~~~--~~~g~id~lv~~A-g~~ 403 (582)
T PRK05855 385 -------WVR--AEHGVPDIVVNNA-GIG 403 (582)
T ss_pred -------HHH--HhcCCCcEEEECC-ccC
Confidence 111 1224589999873 543
No 292
>PRK12747 short chain dehydrogenase; Provisional
Probab=84.89 E-value=6 Score=37.48 Aligned_cols=43 Identities=21% Similarity=0.159 Sum_probs=31.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
.|.+.|.|+||.||..+.+-+.+. .++|+.+. .++-+.+.+.+
T Consensus 4 ~k~~lItGas~gIG~~ia~~l~~~--G~~v~~~~-~~~~~~~~~~~ 46 (252)
T PRK12747 4 GKVALVTGASRGIGRAIAKRLAND--GALVAIHY-GNRKEEAEETV 46 (252)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHC--CCeEEEEc-CCCHHHHHHHH
Confidence 478999999999999999999875 56666543 34444444433
No 293
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=84.80 E-value=4.8 Score=40.77 Aligned_cols=93 Identities=13% Similarity=0.158 Sum_probs=55.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcc-cHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~-~~~~l~~~l~~~~~~~~v 153 (473)
.++|.|.|+ |.||..++.+.+.. ..+ |+++.. +-++ .+.++++..+.+.-..+. ..+.++
T Consensus 177 g~~VlV~G~-g~vG~~a~~~ak~~--G~~~Vi~~~~--~~~~-~~~~~~~Ga~~~i~~~~~~~~~~i~------------ 238 (358)
T TIGR03451 177 GDSVAVIGC-GGVGDAAIAGAALA--GASKIIAVDI--DDRK-LEWAREFGATHTVNSSGTDPVEAIR------------ 238 (358)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcC--CHHH-HHHHHHcCCceEEcCCCcCHHHHHH------------
Confidence 368999995 99999999999986 454 666543 3333 345577877655432221 112222
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
++.....+|+|++++.+-..+.-.+.+++.|-+
T Consensus 239 --------~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~ 271 (358)
T TIGR03451 239 --------ALTGGFGADVVIDAVGRPETYKQAFYARDLAGT 271 (358)
T ss_pred --------HHhCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 222223589999987554555555566655443
No 294
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.69 E-value=5.7 Score=37.23 Aligned_cols=44 Identities=20% Similarity=0.142 Sum_probs=32.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
.|++.|.|+||.||....+-+.+. .++|+.+. ++-+.+.+.+.+
T Consensus 7 ~~~vlVtG~sg~iG~~l~~~L~~~--G~~Vi~~~--r~~~~~~~~~~~ 50 (239)
T PRK07666 7 GKNALITGAGRGIGRAVAIALAKE--GVNVGLLA--RTEENLKAVAEE 50 (239)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHH
Confidence 478999999999999999988765 56887754 455555554443
No 295
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=84.66 E-value=1.4 Score=43.69 Aligned_cols=33 Identities=21% Similarity=0.371 Sum_probs=27.8
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
..|+|.|.|+||+||.+..+-+.+. .++|++++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~--G~~V~~~~ 36 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFR--GYTINATV 36 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHC--CCEEEEEE
Confidence 3579999999999999999988775 67887765
No 296
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=84.54 E-value=4.8 Score=38.29 Aligned_cols=42 Identities=26% Similarity=0.283 Sum_probs=31.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
.|++.|.|+||.||.+..+-+.++ .++|+.+. ++.+.+.+..
T Consensus 12 ~k~ilItGa~g~IG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~ 53 (259)
T PRK08213 12 GKTALVTGGSRGLGLQIAEALGEA--GARVVLSA--RKAEELEEAA 53 (259)
T ss_pred CCEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHHHHH
Confidence 378999999999999999998876 56776543 4555554433
No 297
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.53 E-value=4.9 Score=42.17 Aligned_cols=62 Identities=23% Similarity=0.211 Sum_probs=44.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIK 141 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~ 141 (473)
|++.|.|+||.||....+.+.++ ..+|+.+....+.+.+.+.+.+.+-..+. .|-.+...++
T Consensus 211 ~~vlItGasggIG~~la~~l~~~--Ga~vi~~~~~~~~~~l~~~~~~~~~~~~~-~Dv~~~~~~~ 272 (450)
T PRK08261 211 KVALVTGAARGIGAAIAEVLARD--GAHVVCLDVPAAGEALAAVANRVGGTALA-LDITAPDAPA 272 (450)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--CCEEEEEeCCccHHHHHHHHHHcCCeEEE-EeCCCHHHHH
Confidence 68999999999999999999876 67888887666777777777766544332 3433333343
No 298
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=84.51 E-value=11 Score=37.09 Aligned_cols=95 Identities=17% Similarity=0.207 Sum_probs=59.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|+|+ |++|..++.+.++... .+|++.+.. -+.+ +.+++|..+.+.-.++...
T Consensus 168 ~~~vlI~g~-~~vg~~~~~~a~~~g~-~~v~~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~------------------ 224 (340)
T cd05284 168 GSTVVVIGV-GGLGHIAVQILRALTP-ATVIAVDRS--EEAL-KLAERLGADHVLNASDDVV------------------ 224 (340)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHhCC-CcEEEEeCC--HHHH-HHHHHhCCcEEEcCCccHH------------------
Confidence 478999994 5599999999998632 677776543 2333 3346777655543322211
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.+.++.....+|+|++.+.|-..+...+.++..+-++
T Consensus 225 --~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~ 262 (340)
T cd05284 225 --EEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRY 262 (340)
T ss_pred --HHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEE
Confidence 12233333346899999876656677777777665443
No 299
>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina
Probab=84.27 E-value=6.7 Score=38.17 Aligned_cols=94 Identities=13% Similarity=0.125 Sum_probs=55.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|++|+||..++.+.+.+ ..+|+..+... +. .+.++++..+.+.-.++.. +.
T Consensus 141 ~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~~--------------- 197 (324)
T cd08292 141 QWLIQNAAGGAVGKLVAMLAAAR--GINVINLVRRD--AG-VAELRALGIGPVVSTEQPG---WQ--------------- 197 (324)
T ss_pred CEEEEcccccHHHHHHHHHHHHC--CCeEEEEecCH--HH-HHHHHhcCCCEEEcCCCch---HH---------------
Confidence 58999999999999999999987 56676664322 22 2333445544433222111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.+.++.....+|+|++.+.| ..+...+..++.+-++
T Consensus 198 -~~i~~~~~~~~~d~v~d~~g~-~~~~~~~~~l~~~g~~ 234 (324)
T cd08292 198 -DKVREAAGGAPISVALDSVGG-KLAGELLSLLGEGGTL 234 (324)
T ss_pred -HHHHHHhCCCCCcEEEECCCC-hhHHHHHHhhcCCcEE
Confidence 112223333468999987555 4566666666555443
No 300
>TIGR01296 asd_B aspartate-semialdehyde dehydrogenase (peptidoglycan organisms). Two closely related families of aspartate-semialdehyde dehydrogenase are found. They differ by a deep split in phylogenetic and percent identity trees and in gap patterns. This model represents a branch more closely related to the USG-1 protein than to the other aspartate-semialdehyde dehydrogenases represented in model TIGR00978.
Probab=84.24 E-value=1.2 Score=46.30 Aligned_cols=36 Identities=28% Similarity=0.536 Sum_probs=28.8
Q ss_pred eEEEEccCChHhHHHHHHHHh--CCCceEEEEEeccCCH
Q 012004 78 PISVLGSTGSIGTQTLDIVAE--HEDKFRVVALAAGSNI 114 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~--~pd~f~VvaLaa~~Nv 114 (473)
+|+|+||||.+|...++.+.+ || .++++.++..++.
T Consensus 1 ~VaIvGAtG~vG~eLi~lL~~~~hp-~~~l~~~as~~~~ 38 (339)
T TIGR01296 1 NVAIVGATGAVGQEMLKILEERNFP-IDKLVLLASDRSA 38 (339)
T ss_pred CEEEEcCCCHHHHHHHHHHHhCCCC-hhhEEEEeccccC
Confidence 689999999999999999988 65 4667666555443
No 301
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=84.17 E-value=4.6 Score=40.71 Aligned_cols=89 Identities=16% Similarity=0.135 Sum_probs=54.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC-CHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS-NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~-Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|+|.|+ |.||..+..+++.. ..+|++..... +-+++ +.++++..+++. ..++. +.
T Consensus 174 ~~vlI~G~-G~vG~~a~q~ak~~--G~~vi~~~~~~~~~~~~-~~~~~~Ga~~v~-~~~~~---~~-------------- 231 (355)
T cd08230 174 RRALVLGA-GPIGLLAALLLRLR--GFEVYVLNRRDPPDPKA-DIVEELGATYVN-SSKTP---VA-------------- 231 (355)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCeEEEEecCCCCHHHH-HHHHHcCCEEec-CCccc---hh--------------
Confidence 58999996 99999999999987 45788765421 33343 467788877532 11111 00
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
+ . + ....+|+|+++.-+-..+.-.+.+++.|-
T Consensus 232 --~-~-~--~~~~~d~vid~~g~~~~~~~~~~~l~~~G 263 (355)
T cd08230 232 --E-V-K--LVGEFDLIIEATGVPPLAFEALPALAPNG 263 (355)
T ss_pred --h-h-h--hcCCCCEEEECcCCHHHHHHHHHHccCCc
Confidence 0 0 0 12368999998654344444555555543
No 302
>PF07993 NAD_binding_4: Male sterility protein; InterPro: IPR013120 This family represents the C-terminal NAD-binding region of the male sterility protein from Arabidopsis and Drosophila. A sequence-related jojoba acyl CoA reductase is also included.; PDB: 4DQV_A.
Probab=84.09 E-value=1.9 Score=41.66 Aligned_cols=39 Identities=18% Similarity=0.340 Sum_probs=27.6
Q ss_pred EEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHH
Q 012004 81 VLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLAD 119 (473)
Q Consensus 81 ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~ 119 (473)
|-||||++|...|+-+-+.++..+|++|.=.+|.+...+
T Consensus 1 lTGaTGflG~~ll~~Ll~~~~~~~I~cLvR~~~~~~~~~ 39 (249)
T PF07993_consen 1 LTGATGFLGSHLLEELLRQPPDVKIYCLVRASSSQSALE 39 (249)
T ss_dssp EE-TTSHHHHHHHHHHHHHS-TTEEEEEE-SSSHHHHHH
T ss_pred CcCCCcHHHHHHHHHHHcCCCCcEEEEEEeCcccccchh
Confidence 579999999999987776665339999987776644433
No 303
>PRK07069 short chain dehydrogenase; Validated
Probab=83.97 E-value=8.9 Score=35.94 Aligned_cols=43 Identities=16% Similarity=0.188 Sum_probs=30.6
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR 123 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~ 123 (473)
++.|.|+||.||....+.+.+. .++|+.+.-. ..+.+.+...+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~--G~~v~~~~r~-~~~~~~~~~~~ 43 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQ--GAKVFLTDIN-DAAGLDAFAAE 43 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHC--CCEEEEEeCC-cchHHHHHHHH
Confidence 4899999999999999999875 6788766532 23444444433
No 304
>TIGR00639 PurN phosphoribosylglycinamide formyltransferase, formyltetrahydrofolate-dependent. In phylogenetic analyses, the member from Saccharomyces cerevisiae shows a long branch length but membership in the family, while the formyltetrahydrofolate deformylases form a closely related outgroup.
Probab=83.91 E-value=18 Score=34.76 Aligned_cols=117 Identities=21% Similarity=0.143 Sum_probs=70.7
Q ss_pred eeEEEEcc-CChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCccc------HHHHHHHHhcCCC
Q 012004 77 KPISVLGS-TGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL------LDEIKEALANVEE 149 (473)
Q Consensus 77 k~I~ILGS-TGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~------~~~l~~~l~~~~~ 149 (473)
+||+||-| +||-....++-+++..-..+|+++..++.-....+.|++.+-.+..+..++. -.++.+.+.....
T Consensus 1 ~riail~sg~gs~~~~ll~~~~~~~l~~~I~~vi~~~~~~~~~~~A~~~gip~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (190)
T TIGR00639 1 KRIVVLISGNGSNLQAIIDACKEGKIPASVVLVISNKPDAYGLERAAQAGIPTFVLSLKDFPSREAFDQAIIEELRAHEV 80 (190)
T ss_pred CeEEEEEcCCChhHHHHHHHHHcCCCCceEEEEEECCccchHHHHHHHcCCCEEEECccccCchhhhhHHHHHHHHhcCC
Confidence 47888887 6777777777777765567888876665434556888998887776542211 1234444443334
Q ss_pred CcEEEechhhHH--HhhcCCCCCEEEEe----cccccCcHHHHHHHHcCCc
Q 012004 150 KPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 150 ~~~v~~G~egl~--~la~~~~~D~Vv~A----IvG~aGL~ptl~Ai~~GK~ 194 (473)
+.-|+.|---+. ++.+... --++|- +--+-|..|...|+.+|.+
T Consensus 81 D~iv~~~~~~il~~~~l~~~~-~~~iNiHpslLP~yrG~~p~~~ai~~g~~ 130 (190)
T TIGR00639 81 DLVVLAGFMRILGPTFLSRFA-GRILNIHPSLLPAFPGLHAVEQALEAGVK 130 (190)
T ss_pred CEEEEeCcchhCCHHHHhhcc-CCEEEEeCCcccCCCCccHHHHHHHcCCC
Confidence 444555643222 2222221 134543 3347788899999998843
No 305
>TIGR01745 asd_gamma aspartate-semialdehyde dehydrogenase, gamma-proteobacterial.
Probab=83.84 E-value=0.94 Score=47.97 Aligned_cols=25 Identities=24% Similarity=0.506 Sum_probs=22.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHED 101 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd 101 (473)
|+|+|+||||.+|+..++++..+|+
T Consensus 1 ~~VavvGATG~VG~~ll~~L~~e~~ 25 (366)
T TIGR01745 1 KNVGLVGWRGMVGSVLMQRMQEERD 25 (366)
T ss_pred CeEEEEcCcCHHHHHHHHHHHhCCC
Confidence 5799999999999999999985544
No 306
>PRK07577 short chain dehydrogenase; Provisional
Probab=83.83 E-value=6.7 Score=36.44 Aligned_cols=31 Identities=26% Similarity=0.328 Sum_probs=26.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
|+|.|.|+||.||.+...-+.+. .++|+++.
T Consensus 4 k~vlItG~s~~iG~~ia~~l~~~--G~~v~~~~ 34 (234)
T PRK07577 4 RTVLVTGATKGIGLALSLRLANL--GHQVIGIA 34 (234)
T ss_pred CEEEEECCCCcHHHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999988876 57787765
No 307
>cd08290 ETR 2-enoyl thioester reductase (ETR). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f
Probab=83.80 E-value=8.1 Score=38.14 Aligned_cols=98 Identities=10% Similarity=0.082 Sum_probs=57.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCH-HHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNI-TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv-~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.|++|++|..++.+.+.. ..+|++.+..... +.-.+.++++..+.+.-.++.......+
T Consensus 147 g~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~------------ 212 (341)
T cd08290 147 GDWVIQNGANSAVGQAVIQLAKLL--GIKTINVVRDRPDLEELKERLKALGADHVLTEEELRSLLATE------------ 212 (341)
T ss_pred CCEEEEccchhHHHHHHHHHHHHc--CCeEEEEEcCCCcchhHHHHHHhcCCCEEEeCcccccccHHH------------
Confidence 468999999999999999999987 6788877653321 1223444667766655332210001111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
.+..+... .+|+|++...| ..+...+..++.+-
T Consensus 213 ----~i~~~~~~-~~d~vld~~g~-~~~~~~~~~l~~~G 245 (341)
T cd08290 213 ----LLKSAPGG-RPKLALNCVGG-KSATELARLLSPGG 245 (341)
T ss_pred ----HHHHHcCC-CceEEEECcCc-HhHHHHHHHhCCCC
Confidence 11112222 57899987555 44555566665443
No 308
>PRK07791 short chain dehydrogenase; Provisional
Probab=83.79 E-value=9.9 Score=37.47 Aligned_cols=32 Identities=28% Similarity=0.293 Sum_probs=26.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|.+.|.|++|.||..+.+-+.+. ..+|+.+.
T Consensus 6 ~k~~lITGas~GIG~aia~~la~~--G~~vii~~ 37 (286)
T PRK07791 6 GRVVIVTGAGGGIGRAHALAFAAE--GARVVVND 37 (286)
T ss_pred CCEEEEECCCchHHHHHHHHHHHC--CCEEEEee
Confidence 378999999999999999988875 56676653
No 309
>COG0451 WcaG Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.74 E-value=1.5 Score=42.29 Aligned_cols=34 Identities=24% Similarity=0.291 Sum_probs=28.9
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSN 113 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~N 113 (473)
+|.|.|+||+||+...+-+.+. .++|+++.-..+
T Consensus 2 ~ILVtG~tGfiG~~l~~~L~~~--g~~V~~~~r~~~ 35 (314)
T COG0451 2 RILVTGGAGFIGSHLVERLLAA--GHDVRGLDRLRD 35 (314)
T ss_pred eEEEEcCcccHHHHHHHHHHhC--CCeEEEEeCCCc
Confidence 4999999999999999888876 899999985443
No 310
>cd08244 MDR_enoyl_red Possible enoyl reductase. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr
Probab=83.73 E-value=9.8 Score=36.93 Aligned_cols=93 Identities=18% Similarity=0.231 Sum_probs=57.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCc-ccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v~ 154 (473)
..+|.|.|++|++|..++.+.+.+ ..+|++++. +-+. .+.++++..+.+.-..+ +....
T Consensus 143 ~~~vlI~g~~~~~g~~~~~la~~~--g~~v~~~~~--~~~~-~~~~~~~g~~~~~~~~~~~~~~~--------------- 202 (324)
T cd08244 143 GDVVLVTAAAGGLGSLLVQLAKAA--GATVVGAAG--GPAK-TALVRALGADVAVDYTRPDWPDQ--------------- 202 (324)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHC--CCEEEEEeC--CHHH-HHHHHHcCCCEEEecCCccHHHH---------------
Confidence 358999999999999999999988 567777653 3233 34456666654432211 11111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.++.....+|+|++.+.|-. ....+.++..+-+
T Consensus 203 -----~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~ 236 (324)
T cd08244 203 -----VREALGGGGVTVVLDGVGGAI-GRAALALLAPGGR 236 (324)
T ss_pred -----HHHHcCCCCceEEEECCChHh-HHHHHHHhccCcE
Confidence 222222235899999876653 4666666655433
No 311
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=83.51 E-value=10 Score=42.74 Aligned_cols=157 Identities=17% Similarity=0.192 Sum_probs=102.7
Q ss_pred CCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec---------------cCCHHHHHHHHHhhCCCEEEEeCccc
Q 012004 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA---------------GSNITLLADQVKRFKPQVVAVRNESL 136 (473)
Q Consensus 72 ~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa---------------~~Nv~~L~~q~~~f~P~~v~v~de~~ 136 (473)
+....+++.|+|| ||.|.+-++-.+++|+ |.+||.-- ..-.+ +.+++++++.+.+.++-++.
T Consensus 112 ~~~~~~r~lIiGA-G~ag~~l~r~~~~~~~-~~pV~fiDdd~~~~g~~i~Gv~V~g~~~-i~~~v~~~~~~~iiiAips~ 188 (588)
T COG1086 112 QKDNRIRLLIIGA-GSAGDLLLRALRRDPE-YTPVAFLDDDPDLTGMKIRGVPVLGRIE-IERVVEELGIQLILIAIPSA 188 (588)
T ss_pred cccCCCceEEEcC-chHHHHHHHHHHhCCC-cceEEEECCChhhcCCEEeceeeechhH-HHHHHHHcCCceEEEecCCC
Confidence 3355679999998 5679999999999988 88877532 33456 88999999999888865544
Q ss_pred H----HHHHHHHhcCCCCcEEEechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeecc-----
Q 012004 137 L----DEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG----- 207 (473)
Q Consensus 137 ~----~~l~~~l~~~~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG----- 207 (473)
- .++-+.+...+..++++..-+-+.+.... ==|+-+.=+=|=.=..|-.+.+.+ -+-||-.||+||
T Consensus 189 ~~~~~~~i~~~l~~~~~~v~~lP~~~~l~~~~~~-lreI~ieDLLgR~pV~~d~~~i~~----~~~gK~vLVTGagGSiG 263 (588)
T COG1086 189 SQEERRRILLRLARTGIAVRILPQLTDLKDLNGQ-LREIEIEDLLGRPPVALDTELIGA----MLTGKTVLVTGGGGSIG 263 (588)
T ss_pred CHHHHHHHHHHHHhcCCcEEecCcHHHHHHhccc-cccCCHHHHhCCCCCCCCHHHHHh----HcCCCEEEEeCCCCcHH
Confidence 2 33334444455556677666665542211 122222223333333333333332 356788899986
Q ss_pred -ccchHHHhhcCCeEeecccchhhHHHhhc
Q 012004 208 -PFVLPLAHKHNIKILPADSEHSAIFQCIQ 236 (473)
Q Consensus 208 -~li~~~a~~~~~~IlPVDSEHsAIfQcL~ 236 (473)
++..+.++.+-.+|+=.|.--.++||.-+
T Consensus 264 sel~~qil~~~p~~i~l~~~~E~~~~~i~~ 293 (588)
T COG1086 264 SELCRQILKFNPKEIILFSRDEYKLYLIDM 293 (588)
T ss_pred HHHHHHHHhcCCCEEEEecCchHHHHHHHH
Confidence 46677777777889999988889988754
No 312
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=83.38 E-value=7.4 Score=33.38 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEH 99 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~ 99 (473)
|++.|.|+||+||....+.+.++
T Consensus 1 ~~~li~Ga~~~iG~~~~~~l~~~ 23 (180)
T smart00822 1 GTYLITGGLGGLGLELARWLAER 23 (180)
T ss_pred CEEEEEcCCChHHHHHHHHHHHh
Confidence 57899999999999999999875
No 313
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=83.27 E-value=8.9 Score=36.05 Aligned_cols=32 Identities=22% Similarity=0.274 Sum_probs=27.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|++.|.|+||.||....+-+.+. .++|+++.-
T Consensus 9 k~vlItGas~~iG~~la~~l~~~--G~~v~~~~~ 40 (252)
T PRK08220 9 KTVWVTGAAQGIGYAVALAFVEA--GAKVIGFDQ 40 (252)
T ss_pred CEEEEeCCCchHHHHHHHHHHHC--CCEEEEEec
Confidence 78999999999999999988765 678887753
No 314
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=83.23 E-value=1.4 Score=42.90 Aligned_cols=32 Identities=25% Similarity=0.378 Sum_probs=27.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
++|.|+|+||.||....+-+.+. .++|+++.-
T Consensus 1 ~~vlItG~~G~iG~~l~~~L~~~--g~~V~~~~r 32 (328)
T TIGR03466 1 MKVLVTGATGFVGSAVVRLLLEQ--GEEVRVLVR 32 (328)
T ss_pred CeEEEECCccchhHHHHHHHHHC--CCEEEEEEe
Confidence 37999999999999999998876 578888863
No 315
>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=83.21 E-value=8.9 Score=36.67 Aligned_cols=93 Identities=14% Similarity=0.167 Sum_probs=55.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|++|++|..++.+.+.. ..+|+.++.. -+.+. ..+++..+.+.-.+... +.
T Consensus 146 ~~vli~g~~~~~g~~~~~~~~~~--g~~v~~~~~~--~~~~~-~~~~~g~~~~~~~~~~~---~~--------------- 202 (328)
T cd08268 146 DSVLITAASSSVGLAAIQIANAA--GATVIATTRT--SEKRD-ALLALGAAHVIVTDEED---LV--------------- 202 (328)
T ss_pred CEEEEecCccHHHHHHHHHHHHc--CCEEEEEcCC--HHHHH-HHHHcCCCEEEecCCcc---HH---------------
Confidence 58999999999999999999887 4667666432 24433 33555544433222111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+.+......+|++++...| .++...+.++..+-+
T Consensus 203 -~~~~~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g~ 238 (328)
T cd08268 203 -AEVLRITGGKGVDVVFDPVGG-PQFAKLADALAPGGT 238 (328)
T ss_pred -HHHHHHhCCCCceEEEECCch-HhHHHHHHhhccCCE
Confidence 112222333358999988666 566666666655433
No 316
>cd05282 ETR_like 2-enoyl thioester reductase-like. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman
Probab=83.11 E-value=15 Score=35.72 Aligned_cols=94 Identities=12% Similarity=0.182 Sum_probs=59.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcc-cHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~-~~~~l~~~l~~~~~~~~v~ 154 (473)
..+|.|.|++|.||..+..+.+.. ..+|++++.. -+. .++++++..+.+.-..+. ....+.
T Consensus 139 ~~~vlI~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~~~~~~~------------- 200 (323)
T cd05282 139 GDWVIQNAANSAVGRMLIQLAKLL--GFKTINVVRR--DEQ-VEELKALGADEVIDSSPEDLAQRVK------------- 200 (323)
T ss_pred CCEEEEcccccHHHHHHHHHHHHC--CCeEEEEecC--hHH-HHHHHhcCCCEEecccchhHHHHHH-------------
Confidence 368999999999999999999987 5777766543 344 345577776655433221 111222
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
++.....+|+|++.+.| ..+...+..++.+-++
T Consensus 201 -------~~~~~~~~d~vl~~~g~-~~~~~~~~~l~~~g~~ 233 (323)
T cd05282 201 -------EATGGAGARLALDAVGG-ESATRLARSLRPGGTL 233 (323)
T ss_pred -------HHhcCCCceEEEECCCC-HHHHHHHHhhCCCCEE
Confidence 22222358999987655 4556667777655443
No 317
>PRK07201 short chain dehydrogenase; Provisional
Probab=82.67 E-value=9.9 Score=41.59 Aligned_cols=82 Identities=20% Similarity=0.179 Sum_probs=50.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEE-eCcccHHHHHHHHhcCCCCc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAV-RNESLLDEIKEALANVEEKP 151 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v-~de~~~~~l~~~l~~~~~~~ 151 (473)
.|++.|.|+||.||.....-+.+. .++|+.++ +|-+.+.+...+. ..+...+ .|-.+.+.+++.+.
T Consensus 371 ~k~vlItGas~giG~~la~~l~~~--G~~V~~~~--r~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~~~~~~~------ 440 (657)
T PRK07201 371 GKVVLITGASSGIGRATAIKVAEA--GATVFLVA--RNGEALDELVAEIRAKGGTAHAYTCDLTDSAAVDHTVK------ 440 (657)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEE--CCHHHHHHHHHHHHhcCCcEEEEEecCCCHHHHHHHHH------
Confidence 478999999999999999988776 57887764 4556655544433 3333332 45444444544331
Q ss_pred EEEechhhHHHhhcCCCCCEEEEec
Q 012004 152 EILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 152 ~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ .....|+||+..
T Consensus 441 -------~~~~--~~g~id~li~~A 456 (657)
T PRK07201 441 -------DILA--EHGHVDYLVNNA 456 (657)
T ss_pred -------HHHH--hcCCCCEEEECC
Confidence 1111 223689999873
No 318
>PRK08303 short chain dehydrogenase; Provisional
Probab=82.63 E-value=12 Score=37.59 Aligned_cols=32 Identities=19% Similarity=0.059 Sum_probs=26.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|.+.|.|+|+.||..+..-+.+. .++|+.+.
T Consensus 8 ~k~~lITGgs~GIG~aia~~la~~--G~~Vv~~~ 39 (305)
T PRK08303 8 GKVALVAGATRGAGRGIAVELGAA--GATVYVTG 39 (305)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 378999999999999999998875 67877654
No 319
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.50 E-value=12 Score=36.06 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=33.6
Q ss_pred CeeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 012004 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (473)
Q Consensus 76 ~k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P 126 (473)
.|.+.|.|++ +.||..+..-+.+. .++|+.. .+| +.+.+++++...
T Consensus 7 ~k~~lItGas~~~gIG~a~a~~la~~--G~~Vi~~--~r~-~~~~~~~~~~~~ 54 (252)
T PRK06079 7 GKKIVVMGVANKRSIAWGCAQAIKDQ--GATVIYT--YQN-DRMKKSLQKLVD 54 (252)
T ss_pred CCEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEe--cCc-hHHHHHHHhhcc
Confidence 4789999999 78999999998875 6787754 345 455555555543
No 320
>PRK08324 short chain dehydrogenase; Validated
Probab=82.49 E-value=9.9 Score=42.76 Aligned_cols=45 Identities=22% Similarity=0.182 Sum_probs=34.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
|++.|.|+||.||..+...+.+. .++|+.+. +|-+.+.+.+.++.
T Consensus 423 k~vLVTGasggIG~~la~~L~~~--Ga~Vvl~~--r~~~~~~~~~~~l~ 467 (681)
T PRK08324 423 KVALVTGAAGGIGKATAKRLAAE--GACVVLAD--LDEEAAEAAAAELG 467 (681)
T ss_pred CEEEEecCCCHHHHHHHHHHHHC--cCEEEEEe--CCHHHHHHHHHHHh
Confidence 78999999999999999999876 56777664 45566665555554
No 321
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.23 E-value=9.6 Score=36.54 Aligned_cols=31 Identities=23% Similarity=0.184 Sum_probs=25.5
Q ss_pred CeeEEEEccCC--hHhHHHHHHHHhCCCceEEEEE
Q 012004 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVAL 108 (473)
Q Consensus 76 ~k~I~ILGSTG--SIG~qtLdVi~~~pd~f~VvaL 108 (473)
.|++.|.|+|| +||..+..-+.++ .++|+..
T Consensus 6 ~k~vlVtGas~~~giG~~~a~~l~~~--G~~vi~~ 38 (256)
T PRK12859 6 NKVAVVTGVSRLDGIGAAICKELAEA--GADIFFT 38 (256)
T ss_pred CcEEEEECCCCCCChHHHHHHHHHHC--CCeEEEE
Confidence 47899999995 8999999998886 5667654
No 322
>PLN02780 ketoreductase/ oxidoreductase
Probab=82.11 E-value=4.8 Score=40.81 Aligned_cols=44 Identities=23% Similarity=0.175 Sum_probs=33.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+.+.|.|+||-||.+...-+.+. .++|+.+ .+|.+.|.+.+.+.
T Consensus 54 ~~~lITGAs~GIG~alA~~La~~--G~~Vil~--~R~~~~l~~~~~~l 97 (320)
T PLN02780 54 SWALVTGPTDGIGKGFAFQLARK--GLNLVLV--ARNPDKLKDVSDSI 97 (320)
T ss_pred CEEEEeCCCcHHHHHHHHHHHHC--CCCEEEE--ECCHHHHHHHHHHH
Confidence 68999999999999999888875 5677664 35677776655443
No 323
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=82.05 E-value=12 Score=40.41 Aligned_cols=114 Identities=15% Similarity=0.210 Sum_probs=63.7
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHH------hhCCCEEEEeCcccHHHHHHHHhcC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANV 147 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~Nv~~L~~q~~------~f~P~~v~v~de~~~~~l~~~l~~~ 147 (473)
++.||+|.|. |=||+..|+++.+.+ ..++|+|+---...+.++-..+ .|+.+. ...++.. +.-.
T Consensus 59 ~~~kVaInGf-GrIGR~vlr~l~~~~~~~~evvaINd~~~~~~~ayLl~yDS~hG~f~~~v-~~~~g~~-------l~v~ 129 (395)
T PLN03096 59 AKIKVAINGF-GRIGRNFLRCWHGRKDSPLDVVAINDTGGVKQASHLLKYDSTLGTFDADV-KPVGDDA-------ISVD 129 (395)
T ss_pred cccEEEEECc-CHHHHHHHHHHHhCCCCCeEEEEEcCCCCHHHHHHHHhhcccCCCcCCcE-EEecCCE-------EEEC
Confidence 3359999999 999999999987653 4689999865555665544333 122211 1111100 0001
Q ss_pred CCCcEEEechhhHHHhh-cCCCCCEEEEecccccCcHHHHHHHHcC-Cccccc
Q 012004 148 EEKPEILAGEQGVIEAA-RHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (473)
Q Consensus 148 ~~~~~v~~G~egl~~la-~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G-K~IaLA 198 (473)
+..+.++. +....++- ...++|+|+.+.-.+.--.-.-.++++| |+|-+.
T Consensus 130 gk~I~v~~-~~dp~~~~w~~~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iS 181 (395)
T PLN03096 130 GKVIKVVS-DRNPLNLPWGELGIDLVIEGTGVFVDREGAGKHIQAGAKKVLIT 181 (395)
T ss_pred CEEEEEEE-cCCcccccccccCCCEEEECcchhhhHHHHHHHHHCCCEEEEeC
Confidence 11233332 11222221 1247999998765555555556678888 555444
No 324
>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family. This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo
Probab=82.04 E-value=8.3 Score=37.82 Aligned_cols=88 Identities=17% Similarity=0.252 Sum_probs=57.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|+|++|+||..++.+.+.. ..+|++++ + .+.+++|..+.+.- ... ..
T Consensus 164 ~~vlI~g~~g~vg~~~~~~a~~~--G~~v~~~~--~-----~~~~~~~g~~~~~~--~~~---~~--------------- 214 (325)
T cd08264 164 ETVVVFGASGNTGIFAVQLAKMM--GAEVIAVS--R-----KDWLKEFGADEVVD--YDE---VE--------------- 214 (325)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCeEEEEe--H-----HHHHHHhCCCeeec--chH---HH---------------
Confidence 68999999999999999999987 45677765 1 14456676554431 111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIAL 197 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaL 197 (473)
+.+.++. ..+|+|++++.+ ..+...+.+++.+-++..
T Consensus 215 -~~l~~~~--~~~d~vl~~~g~-~~~~~~~~~l~~~g~~v~ 251 (325)
T cd08264 215 -EKVKEIT--KMADVVINSLGS-SFWDLSLSVLGRGGRLVT 251 (325)
T ss_pred -HHHHHHh--CCCCEEEECCCH-HHHHHHHHhhccCCEEEE
Confidence 2222333 468999998655 677777888877665543
No 325
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=81.81 E-value=1.8 Score=42.52 Aligned_cols=31 Identities=19% Similarity=0.377 Sum_probs=25.8
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
|.|.|+||+||+...+.+.++ .++++++.-+
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~--g~~~v~~~~~ 32 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDK--GITDILVVDN 32 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhC--CCceEEEecC
Confidence 789999999999999998876 5777776543
No 326
>cd08249 enoyl_reductase_like enoyl_reductase_like. Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de
Probab=81.66 E-value=13 Score=37.16 Aligned_cols=90 Identities=18% Similarity=0.253 Sum_probs=58.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|.|++|++|..++.+.+.. .++|++.+.. +++ +.+++|..+.+.-.... .+.+.
T Consensus 155 ~~~vlI~ga~g~vg~~~~~~a~~~--G~~v~~~~~~---~~~-~~~~~~g~~~v~~~~~~---~~~~~------------ 213 (339)
T cd08249 155 GKPVLIWGGSSSVGTLAIQLAKLA--GYKVITTASP---KNF-DLVKSLGADAVFDYHDP---DVVED------------ 213 (339)
T ss_pred CCEEEEEcChhHHHHHHHHHHHHc--CCeEEEEECc---ccH-HHHHhcCCCEEEECCCc---hHHHH------------
Confidence 368999999999999999999987 5678877632 332 23366766554332211 11111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~ 191 (473)
+.++.. ..+|+|++.+.+-..+...+.+++.
T Consensus 214 ----l~~~~~-~~~d~vl~~~g~~~~~~~~~~~l~~ 244 (339)
T cd08249 214 ----IRAATG-GKLRYALDCISTPESAQLCAEALGR 244 (339)
T ss_pred ----HHHhcC-CCeeEEEEeeccchHHHHHHHHHhc
Confidence 122222 3589999876554778888888886
No 327
>PRK07856 short chain dehydrogenase; Provisional
Probab=81.26 E-value=11 Score=35.77 Aligned_cols=32 Identities=22% Similarity=0.200 Sum_probs=26.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|++.|.|+||.||..+.+.+.+. .++|+.+.
T Consensus 6 ~k~~lItGas~gIG~~la~~l~~~--g~~v~~~~ 37 (252)
T PRK07856 6 GRVVLVTGGTRGIGAGIARAFLAA--GATVVVCG 37 (252)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHC--CCEEEEEe
Confidence 478999999999999999998875 56776653
No 328
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=81.26 E-value=12 Score=38.04 Aligned_cols=92 Identities=11% Similarity=0.168 Sum_probs=56.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|+ |+||..++.+.+.. .. +|++++.. -++ .+.++++..+.+.-.++. ...+.+
T Consensus 189 ~~VlV~G~-g~vG~~a~q~ak~~--G~~~vi~~~~~--~~~-~~~~~~~Ga~~~i~~~~~-~~~~~~------------- 248 (369)
T cd08301 189 STVAIFGL-GAVGLAVAEGARIR--GASRIIGVDLN--PSK-FEQAKKFGVTEFVNPKDH-DKPVQE------------- 248 (369)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcCC--HHH-HHHHHHcCCceEEccccc-chhHHH-------------
Confidence 68999985 99999999999987 45 57666433 233 345677876554422210 011221
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
.+.++... .+|+|++++-+-..+...+.+++.|
T Consensus 249 ---~v~~~~~~-~~d~vid~~G~~~~~~~~~~~~~~~ 281 (369)
T cd08301 249 ---VIAEMTGG-GVDYSFECTGNIDAMISAFECVHDG 281 (369)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHHhhcC
Confidence 12223322 5899999876656677777777663
No 329
>PRK06953 short chain dehydrogenase; Provisional
Probab=81.14 E-value=8.5 Score=35.91 Aligned_cols=39 Identities=26% Similarity=0.410 Sum_probs=30.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~ 118 (473)
||++.|.|+||.||..+.+-+.+. .++|+.+. +|.+.+.
T Consensus 1 ~~~vlvtG~sg~iG~~la~~L~~~--G~~v~~~~--r~~~~~~ 39 (222)
T PRK06953 1 MKTVLIVGASRGIGREFVRQYRAD--GWRVIATA--RDAAALA 39 (222)
T ss_pred CceEEEEcCCCchhHHHHHHHHhC--CCEEEEEE--CCHHHHH
Confidence 578999999999999999988765 67877753 4555543
No 330
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=81.05 E-value=7.2 Score=39.05 Aligned_cols=93 Identities=14% Similarity=0.100 Sum_probs=55.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|+ |++|..++.+.+.. .+ .|++.+ ++-+++ ++++++..+.+.-..+.. +.
T Consensus 174 ~~vlI~g~-g~vG~~a~q~a~~~--G~~~v~~~~--~~~~~~-~~~~~~ga~~~i~~~~~~---~~-------------- 230 (351)
T cd08233 174 DTALVLGA-GPIGLLTILALKAA--GASKIIVSE--PSEARR-ELAEELGATIVLDPTEVD---VV-------------- 230 (351)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCEEEEEC--CCHHHH-HHHHHhCCCEEECCCccC---HH--------------
Confidence 68999985 99999999999987 56 566554 233443 455667665544222111 11
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+.++.....+|+|++.+.+-..+...+.+++.|-+
T Consensus 231 --~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~ 267 (351)
T cd08233 231 --AEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGT 267 (351)
T ss_pred --HHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCE
Confidence 1122222223589999986554556666666665544
No 331
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=80.99 E-value=8.3 Score=35.67 Aligned_cols=81 Identities=16% Similarity=0.162 Sum_probs=46.5
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCE-EEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQV-VAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--Nv~~L~~q~~~f~P~~-v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
|.|.|+||.||....+.+.+. .++|+.++... +.+.+.+-++....+. ....|-.+...+++.+.
T Consensus 1 vlItG~~g~iG~~la~~l~~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~---------- 68 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKE--GAKVIITYRSSEEGAEEVVEELKAYGVKALGVVCDVSDREDVKAVVE---------- 68 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHC--CCEEEEEeCCchhHHHHHHHHHHhcCCceEEEEecCCCHHHHHHHHH----------
Confidence 579999999999999998875 67887776543 2223333333222222 22345444555554432
Q ss_pred chhhHHHhhcCCCCCEEEEec
Q 012004 156 GEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AI 176 (473)
++.+ ....+|.|++..
T Consensus 69 ---~~~~--~~~~id~vi~~a 84 (239)
T TIGR01830 69 ---EIEE--ELGPIDILVNNA 84 (239)
T ss_pred ---HHHH--HhCCCCEEEECC
Confidence 1111 124688888874
No 332
>TIGR03025 EPS_sugtrans exopolysaccharide biosynthesis polyprenyl glycosylphosphotransferase. Certain closely related transferase enzymes such as Sinorhizobium ExoY and Lactococcus EpsD lack the N-terminal domain and are not found by this model.
Probab=80.85 E-value=12 Score=39.72 Aligned_cols=61 Identities=15% Similarity=0.290 Sum_probs=48.5
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCC-ceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEeCccc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNESL 136 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~--------------~Nv~~L~~q~~~f~P~~v~v~de~~ 136 (473)
..+++.|+|+ |+-|.+.++-++++|+ .|+++|..-. .+.+.+.+.+++.+.+.|.++.+..
T Consensus 124 ~~~rvLIvGa-g~~a~~l~~~L~~~~~~g~~vvG~idd~~~~~~~i~g~pVlg~~~~l~~~i~~~~id~ViIa~p~~ 199 (445)
T TIGR03025 124 NLRRVLIVGT-GEAARELAAALSRNPDLGYRVVGFVDDRPSDRVEVAGLPVLGKLDDLVELVRAHRVDEVIIALPLS 199 (445)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhhCccCCeEEEEEEeCCcccccccCCCcccCCHHHHHHHHHhCCCCEEEEecCcc
Confidence 4578999997 6679999999988775 6999997532 1567899999999999999876543
No 333
>KOG2741 consensus Dimeric dihydrodiol dehydrogenase [Carbohydrate transport and metabolism; Secondary metabolites biosynthesis, transport and catabolism]
Probab=80.83 E-value=11 Score=39.88 Aligned_cols=154 Identities=13% Similarity=0.168 Sum_probs=97.7
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
..-|+.|+|+ |.|+.-.+..+-..| -+++|+|+++. ..+...+-|+.++-. ++++
T Consensus 5 ~~ir~Gi~g~-g~ia~~f~~al~~~p~s~~~Ivava~~-s~~~A~~fAq~~~~~----------------------~~k~ 60 (351)
T KOG2741|consen 5 ATIRWGIVGA-GRIARDFVRALHTLPESNHQIVAVADP-SLERAKEFAQRHNIP----------------------NPKA 60 (351)
T ss_pred ceeEEEEeeh-hHHHHHHHHHhccCcccCcEEEEEecc-cHHHHHHHHHhcCCC----------------------CCcc
Confidence 3458999987 355555444444445 37999999988 466665666555421 2345
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeec--cccchHHHhhcCCeEe-ecccchhh
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAG--GPFVLPLAHKHNIKIL-PADSEHSA 230 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~a--G~li~~~a~~~~~~Il-PVDSEHsA 230 (473)
+.+ .+++++.+++|+|+.++-=.-=-.-..-++..||-|++ -|=.-... =.-|.++|++.|.++. =.=+-|+=
T Consensus 61 y~s---yEeLakd~~vDvVyi~~~~~qH~evv~l~l~~~K~VL~-EKPla~n~~e~~~iveaA~~rgv~~meg~~~R~~P 136 (351)
T KOG2741|consen 61 YGS---YEELAKDPEVDVVYISTPNPQHYEVVMLALNKGKHVLC-EKPLAMNVAEAEEIVEAAEARGVFFMEGLWWRFFP 136 (351)
T ss_pred ccC---HHHHhcCCCcCEEEeCCCCccHHHHHHHHHHcCCcEEe-cccccCCHHHHHHHHHHHHHcCcEEEeeeeeecCc
Confidence 433 56788899999999888776666777888999998543 11111111 1224567888886543 34445554
Q ss_pred HHHhhc----CCCCCccceEEEEecCCCCCC
Q 012004 231 IFQCIQ----GLPEGALRRIILTASGGAFRD 257 (473)
Q Consensus 231 IfQcL~----g~~~~~v~kiiLTASGGPFr~ 257 (473)
.++-|+ ++.-.+|+.+.+ .=|+||+.
T Consensus 137 ~~~~lke~l~~~~~Gdvk~v~~-~~~f~~~~ 166 (351)
T KOG2741|consen 137 RYAKLKELLSSGVLGDVKSVEV-EFGFPFPE 166 (351)
T ss_pred HHHHHHHHHhccccccceEEEE-ecCCCcch
Confidence 444443 445578999999 67788873
No 334
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=80.66 E-value=12 Score=38.21 Aligned_cols=44 Identities=14% Similarity=0.124 Sum_probs=31.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
.+++.|+|. |-+|.+....++++. .+|... .++.+. .++++++.
T Consensus 152 g~kvlViG~-G~iG~~~a~~L~~~G--a~V~v~--~r~~~~-~~~~~~~G 195 (296)
T PRK08306 152 GSNVLVLGF-GRTGMTLARTLKALG--ANVTVG--ARKSAH-LARITEMG 195 (296)
T ss_pred CCEEEEECC-cHHHHHHHHHHHHCC--CEEEEE--ECCHHH-HHHHHHcC
Confidence 579999996 889999999999873 566554 344444 34555554
No 335
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.60 E-value=16 Score=34.70 Aligned_cols=32 Identities=19% Similarity=0.173 Sum_probs=26.1
Q ss_pred CeeEEEEccCC--hHhHHHHHHHHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTG--SIG~qtLdVi~~~pd~f~VvaLa 109 (473)
.|+|.|.|+|| .||.+...-+.+. .++|+.+.
T Consensus 5 ~k~vlItGas~~~giG~~la~~l~~~--G~~vi~~~ 38 (256)
T PRK12748 5 KKIALVTGASRLNGIGAAVCRRLAAK--GIDIFFTY 38 (256)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHc--CCcEEEEc
Confidence 47899999996 6999999888876 57887664
No 336
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones. 3Beta_HSD; GO: 0003854 3-beta-hydroxy-delta5-steroid dehydrogenase activity, 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0006694 steroid biosynthetic process, 0055114 oxidation-reduction process
Probab=80.54 E-value=4 Score=40.85 Aligned_cols=62 Identities=15% Similarity=0.202 Sum_probs=38.7
Q ss_pred EEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHH
Q 012004 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKE 142 (473)
Q Consensus 80 ~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~ 142 (473)
.|.|+||++|...++-+.++.+.++|.++.-..+...+. ....+.-......|-.+.+.+.+
T Consensus 1 LVTGgsGflG~~iv~~Ll~~g~~~~Vr~~d~~~~~~~~~-~~~~~~~~~~~~~Di~d~~~l~~ 62 (280)
T PF01073_consen 1 LVTGGSGFLGSHIVRQLLERGYIYEVRVLDRSPPPKFLK-DLQKSGVKEYIQGDITDPESLEE 62 (280)
T ss_pred CEEcCCcHHHHHHHHHHHHCCCceEEEEcccccccccch-hhhcccceeEEEeccccHHHHHH
Confidence 489999999999999999887778888876544433322 23333322233344444444443
No 337
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=80.46 E-value=14 Score=36.61 Aligned_cols=92 Identities=14% Similarity=0.199 Sum_probs=55.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.| +|++|..++.+.+.. .++|++.+.. +.-.+.++++..+.+.-..+.. +.
T Consensus 161 ~~vLI~g-~g~vG~~a~~lA~~~--g~~v~~~~~s---~~~~~~~~~~g~~~v~~~~~~~---~~--------------- 216 (337)
T cd08261 161 DTVLVVG-AGPIGLGVIQVAKAR--GARVIVVDID---DERLEFARELGADDTINVGDED---VA--------------- 216 (337)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEECCC---HHHHHHHHHhCCCEEecCcccC---HH---------------
Confidence 5899997 589999999999986 6788877543 2233455667765554222111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
+.+.+......+|++++.+.|-..+...+..++.+-
T Consensus 217 -~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G 252 (337)
T cd08261 217 -ARLRELTDGEGADVVIDATGNPASMEEAVELVAHGG 252 (337)
T ss_pred -HHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCC
Confidence 122222233358899988655455555666665543
No 338
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=80.19 E-value=13 Score=37.77 Aligned_cols=90 Identities=14% Similarity=0.227 Sum_probs=56.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.| +|+||..++.+.+.. ..+|++++. +-+++.+..+++..+.+....+ ...++
T Consensus 182 ~~vlV~G-~G~vG~~av~~Ak~~--G~~vi~~~~--~~~~~~~~~~~~Ga~~~i~~~~--~~~~~--------------- 239 (357)
T PLN02514 182 LRGGILG-LGGVGHMGVKIAKAM--GHHVTVISS--SDKKREEALEHLGADDYLVSSD--AAEMQ--------------- 239 (357)
T ss_pred CeEEEEc-ccHHHHHHHHHHHHC--CCeEEEEeC--CHHHHHHHHHhcCCcEEecCCC--hHHHH---------------
Confidence 5788997 599999999999987 466776553 3455555566777654432211 11111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.. ..+|+|++++-+...+...+.+++.|-++
T Consensus 240 -----~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~i 271 (357)
T PLN02514 240 -----EAA--DSLDYIIDTVPVFHPLEPYLSLLKLDGKL 271 (357)
T ss_pred -----Hhc--CCCcEEEECCCchHHHHHHHHHhccCCEE
Confidence 111 24899999865455666677777666543
No 339
>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase. PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding
Probab=80.09 E-value=15 Score=34.81 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=33.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v 129 (473)
++|.|.|++|+||..+..+.+.. ..+|+..+ ++-+.+. .++++..+.+
T Consensus 141 ~~vlv~g~~~~ig~~~~~~~~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~ 188 (323)
T cd05276 141 ETVLIHGGASGVGTAAIQLAKAL--GARVIATA--GSEEKLE-ACRALGADVA 188 (323)
T ss_pred CEEEEEcCcChHHHHHHHHHHHc--CCEEEEEc--CCHHHHH-HHHHcCCCEE
Confidence 68999999999999999999987 45565543 2333333 3355665444
No 340
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=80.02 E-value=15 Score=36.58 Aligned_cols=96 Identities=13% Similarity=0.136 Sum_probs=58.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.| .|++|..++.+.+... . +|++. .++-+.+ +.++++..+.+.-.++.. +.+.
T Consensus 164 g~~vlV~~-~g~vg~~~~~la~~~G--~~~v~~~--~~~~~~~-~~~~~lg~~~~~~~~~~~---~~~~----------- 223 (341)
T PRK05396 164 GEDVLITG-AGPIGIMAAAVAKHVG--ARHVVIT--DVNEYRL-ELARKMGATRAVNVAKED---LRDV----------- 223 (341)
T ss_pred CCeEEEEC-CCHHHHHHHHHHHHcC--CCEEEEE--cCCHHHH-HHHHHhCCcEEecCcccc---HHHH-----------
Confidence 36888877 5999999999999873 4 34444 2333443 456677766544222211 1111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.++.....+|+|+++..+-..+...+.+++.+-++.
T Consensus 224 -----~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v 260 (341)
T PRK05396 224 -----MAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIA 260 (341)
T ss_pred -----HHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEE
Confidence 1222223468999997666667788888887765543
No 341
>PRK06720 hypothetical protein; Provisional
Probab=79.97 E-value=19 Score=33.64 Aligned_cols=65 Identities=12% Similarity=0.098 Sum_probs=39.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEE-EeCcccHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVA-VRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~--Nv~~L~~q~~~f~P~~v~-v~de~~~~~l~~~ 143 (473)
.|.+.|.|++|.||.+....+.+. .++|+... ++ +.+...++..+..++... ..|-.+...+++.
T Consensus 16 gk~~lVTGa~~GIG~aia~~l~~~--G~~V~l~~-r~~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 83 (169)
T PRK06720 16 GKVAIVTGGGIGIGRNTALLLAKQ--GAKVIVTD-IDQESGQATVEEITNLGGEALFVSYDMEKQGDWQRV 83 (169)
T ss_pred CCEEEEecCCChHHHHHHHHHHHC--CCEEEEEE-CCHHHHHHHHHHHHhcCCcEEEEEccCCCHHHHHHH
Confidence 478999999999999999998876 46665443 22 223333444444555433 3555555555543
No 342
>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=79.97 E-value=9.5 Score=36.80 Aligned_cols=93 Identities=19% Similarity=0.229 Sum_probs=55.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCc-ccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v 153 (473)
..+|.|.| +|++|..++.+.++. .++ |++.+. +-+.+ +.++++..+.+.-.++ +....
T Consensus 130 ~~~vlI~g-~g~vg~~~~~la~~~--g~~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~~~~-------------- 189 (312)
T cd08269 130 GKTVAVIG-AGFIGLLFLQLAAAA--GARRVIAIDR--RPARL-ALARELGATEVVTDDSEAIVER-------------- 189 (312)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECC--CHHHH-HHHHHhCCceEecCCCcCHHHH--------------
Confidence 35899997 689999999999987 566 655432 23333 3556676544332211 11122
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.++.....+|++++.+.|-..+...+..++.+-+
T Consensus 190 ------l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~ 224 (312)
T cd08269 190 ------VRELTGGAGADVVIEAVGHQWPLDLAGELVAERGR 224 (312)
T ss_pred ------HHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCE
Confidence 22223334689999986554556666666665443
No 343
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=79.96 E-value=7.1 Score=39.86 Aligned_cols=56 Identities=38% Similarity=0.513 Sum_probs=32.9
Q ss_pred CeeEEEEccCChHhHHHH--HHHHhCCC---ceEE----------------EEEec--cC-CHHHHHHHHHhhCCCEEEE
Q 012004 76 PKPISVLGSTGSIGTQTL--DIVAEHED---KFRV----------------VALAA--GS-NITLLADQVKRFKPQVVAV 131 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL--dVi~~~pd---~f~V----------------vaLaa--~~-Nv~~L~~q~~~f~P~~v~v 131 (473)
.+.|.|.|.||| |+.|+ .+++..|+ ..++ +.+-. +. +.+.+.+.+.+.+|+++.+
T Consensus 132 ~~~ilI~G~tGS-GKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~pD~iiv 210 (299)
T TIGR02782 132 RKNILVVGGTGS-GKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLRPDRIIV 210 (299)
T ss_pred CCeEEEECCCCC-CHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCCCCEEEE
Confidence 368999999999 88776 34433221 2222 22211 11 5566666666677777766
Q ss_pred e
Q 012004 132 R 132 (473)
Q Consensus 132 ~ 132 (473)
.
T Consensus 211 G 211 (299)
T TIGR02782 211 G 211 (299)
T ss_pred e
Confidence 3
No 344
>KOG2733 consensus Uncharacterized membrane protein [Function unknown]
Probab=79.92 E-value=3.6 Score=44.10 Aligned_cols=105 Identities=26% Similarity=0.397 Sum_probs=64.9
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe-ccCCHHHHHHHHHhhCCC--------EEEEeCcccHHHHHHHHhcCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA-AGSNITLLADQVKRFKPQ--------VVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa-a~~Nv~~L~~q~~~f~P~--------~v~v~de~~~~~l~~~l~~~~ 148 (473)
-++|+||||+-|+-+.+-..+.. .|+-..|+ ||+|.++|.+-.++-.-+ .+.++|-
T Consensus 7 DvVIyGASGfTG~yivee~v~~~-~~~~~slavAGRn~~KL~~vL~~~~~k~~~~ls~~~i~i~D~-------------- 71 (423)
T KOG2733|consen 7 DVVIYGASGFTGKYIVEEAVSSQ-VFEGLSLAVAGRNEKKLQEVLEKVGEKTGTDLSSSVILIADS-------------- 71 (423)
T ss_pred eEEEEccccccceeeHHHHhhhh-cccCceEEEecCCHHHHHHHHHHHhhccCCCcccceEEEecC--------------
Confidence 58999999999999888766532 56656664 789999998777653211 1222221
Q ss_pred CCcEEEechhhHHHhhcCCCCCEEEEeccc---ccCcHHHHHHHHcCCcccccccceeeeccccchH
Q 012004 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVG---CAGLKPTVAAIEAGKDIALANKETLIAGGPFVLP 212 (473)
Q Consensus 149 ~~~~v~~G~egl~~la~~~~~D~Vv~AIvG---~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~ 212 (473)
..++.|.|+|+. +-+|||+ || +.|=.-.-++|++|-. -.=|+|=+.+|+
T Consensus 72 ------~n~~Sl~emak~--~~vivN~-vGPyR~hGE~VVkacienG~~------~vDISGEP~f~E 123 (423)
T KOG2733|consen 72 ------ANEASLDEMAKQ--ARVIVNC-VGPYRFHGEPVVKACIENGTH------HVDISGEPQFME 123 (423)
T ss_pred ------CCHHHHHHHHhh--hEEEEec-cccceecCcHHHHHHHHcCCc------eeccCCCHHHHH
Confidence 134567777764 4566666 34 3444456677777753 112445555555
No 345
>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional
Probab=79.89 E-value=13 Score=36.41 Aligned_cols=91 Identities=9% Similarity=0.078 Sum_probs=53.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|++|.+|..++.+.+.. ..+|++.+. +-+.+ +.++++..+.+.-.++... .
T Consensus 142 ~~vlI~g~~g~ig~~~~~lak~~--G~~v~~~~~--~~~~~-~~~~~~g~~~~~~~~~~~~---~--------------- 198 (327)
T PRK10754 142 EQFLFHAAAGGVGLIACQWAKAL--GAKLIGTVG--SAQKA-QRAKKAGAWQVINYREENI---V--------------- 198 (327)
T ss_pred CEEEEEeCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHHH-HHHHHCCCCEEEcCCCCcH---H---------------
Confidence 68999999999999999999987 556776652 33333 3346666655442222111 1
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.+.++.....+|++++.+.| ..+...+..++.+
T Consensus 199 -~~~~~~~~~~~~d~vl~~~~~-~~~~~~~~~l~~~ 232 (327)
T PRK10754 199 -ERVKEITGGKKVRVVYDSVGK-DTWEASLDCLQRR 232 (327)
T ss_pred -HHHHHHcCCCCeEEEEECCcH-HHHHHHHHHhccC
Confidence 122222222357888887544 4455555555443
No 346
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=79.79 E-value=9.8 Score=40.71 Aligned_cols=41 Identities=29% Similarity=0.450 Sum_probs=31.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQ 120 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q 120 (473)
.|++.|.|+||.||.....-+.+. ..+|++++ +|-+.+.+.
T Consensus 178 gK~VLITGASgGIG~aLA~~La~~--G~~Vi~l~--r~~~~l~~~ 218 (406)
T PRK07424 178 GKTVAVTGASGTLGQALLKELHQQ--GAKVVALT--SNSDKITLE 218 (406)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHH
Confidence 478999999999999999888765 67888875 344555443
No 347
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=79.73 E-value=9 Score=39.07 Aligned_cols=93 Identities=16% Similarity=0.131 Sum_probs=57.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|+ |.||..+..+.+.. .. +|+++. ++-+++ +.++++..+.+.-.++.. +.+
T Consensus 193 ~~VlV~G~-G~vG~~a~~lak~~--G~~~Vi~~~--~~~~r~-~~a~~~Ga~~~i~~~~~~---~~~------------- 250 (371)
T cd08281 193 QSVAVVGL-GGVGLSALLGAVAA--GASQVVAVD--LNEDKL-ALARELGATATVNAGDPN---AVE------------- 250 (371)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCcEEEEc--CCHHHH-HHHHHcCCceEeCCCchh---HHH-------------
Confidence 58999995 99999999999876 45 466654 333443 456778776554322211 111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.++... .+|+|++++-+-..+.-.+.+++.|-++
T Consensus 251 ---~i~~~~~~-g~d~vid~~G~~~~~~~~~~~l~~~G~i 286 (371)
T cd08281 251 ---QVRELTGG-GVDYAFEMAGSVPALETAYEITRRGGTT 286 (371)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHHHhcCCEE
Confidence 12222222 5899999875555677777777666554
No 348
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=79.53 E-value=11 Score=33.56 Aligned_cols=46 Identities=13% Similarity=0.192 Sum_probs=33.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
.|++.|+|+ |=+|+.++.-+... .++=+-+ +++|.+++.+.+++|.
T Consensus 12 ~~~vlviGa-Gg~ar~v~~~L~~~--g~~~i~i-~nRt~~ra~~l~~~~~ 57 (135)
T PF01488_consen 12 GKRVLVIGA-GGAARAVAAALAAL--GAKEITI-VNRTPERAEALAEEFG 57 (135)
T ss_dssp TSEEEEESS-SHHHHHHHHHHHHT--TSSEEEE-EESSHHHHHHHHHHHT
T ss_pred CCEEEEECC-HHHHHHHHHHHHHc--CCCEEEE-EECCHHHHHHHHHHcC
Confidence 478999998 55788888888776 3332222 3589999999999883
No 349
>PRK10124 putative UDP-glucose lipid carrier transferase; Provisional
Probab=79.27 E-value=11 Score=40.83 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=49.5
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCC-ceEEEEEec-----------cCCHHHHHHHHHhhCCCEEEEeCccc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-----------GSNITLLADQVKRFKPQVVAVRNESL 136 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd-~f~VvaLaa-----------~~Nv~~L~~q~~~f~P~~v~v~de~~ 136 (473)
..+++.|+|+ |+-|.+..+-++++|+ .|+++|... -.|.+.+.+.+++.+.+.|.++-+..
T Consensus 142 ~~rrVLIvGa-G~~g~~l~~~L~~~~~~g~~vVGfiDdd~~~g~~VpvlG~~~dL~~~v~~~~IdeViIAip~~ 214 (463)
T PRK10124 142 NKRMVAVAGD-LPAGQMLLESFRNEPWLGFEVVGVYHDPKPGGVSNDWAGNLQQLVEDAKAGKIHNVYIAMSMC 214 (463)
T ss_pred CCCcEEEEEC-CHHHHHHHHHHhcCccCCeEEEEEEeCCccccCCCCcCCCHHHHHHHHHhCCCCEEEEeCCCc
Confidence 3478999985 6679999999988876 799999763 34678899999999999999976543
No 350
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=79.05 E-value=10 Score=38.77 Aligned_cols=89 Identities=15% Similarity=0.264 Sum_probs=54.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|+ |.||..++.+.+.. ..+|++++.. -++..+.++++..+.+.-.. ....++
T Consensus 185 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~vi~~~~~--~~~~~~~~~~~Ga~~vi~~~--~~~~~~--------------- 242 (360)
T PLN02586 185 KHLGVAGL-GGLGHVAVKIGKAF--GLKVTVISSS--SNKEDEAINRLGADSFLVST--DPEKMK--------------- 242 (360)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEEEeCC--cchhhhHHHhCCCcEEEcCC--CHHHHH---------------
Confidence 57888876 99999999999987 5677765433 24445566778776554211 111111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
++. ..+|+|++++.+...+...+..++.|-+
T Consensus 243 -----~~~--~~~D~vid~~g~~~~~~~~~~~l~~~G~ 273 (360)
T PLN02586 243 -----AAI--GTMDYIIDTVSAVHALGPLLGLLKVNGK 273 (360)
T ss_pred -----hhc--CCCCEEEECCCCHHHHHHHHHHhcCCcE
Confidence 111 1379999986443345556666666544
No 351
>cd08246 crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma
Probab=78.73 E-value=17 Score=37.17 Aligned_cols=110 Identities=15% Similarity=0.173 Sum_probs=61.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCccc-HHHHHHHHhcCCCCc----
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKP---- 151 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~-~~~l~~~l~~~~~~~---- 151 (473)
.+|.|.|++|+||..++.+.+.. ..++++++ ++-+++ ++++++..+.+.-.++.. ...... + +.+...
T Consensus 195 ~~vlV~ga~g~iG~a~~~lak~~--G~~vv~~~--~s~~~~-~~~~~~G~~~~i~~~~~~~~~~~~~-~-~~~~~~~~~~ 267 (393)
T cd08246 195 DNVLIWGASGGLGSMAIQLARAA--GANPVAVV--SSEEKA-EYCRALGAEGVINRRDFDHWGVLPD-V-NSEAYTAWTK 267 (393)
T ss_pred CEEEEECCCcHHHHHHHHHHHHc--CCeEEEEe--CCHHHH-HHHHHcCCCEEEccccccccccccc-c-cchhhhhhhh
Confidence 58999999999999999999987 56777654 333443 566778766554322110 000000 0 000000
Q ss_pred EEEechhhHHHhhcCC-CCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 152 EILAGEQGVIEAARHP-DAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 152 ~v~~G~egl~~la~~~-~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
....-.+.+.++.... .+|+|++.. |...+...+..++.+-+
T Consensus 268 ~~~~~~~~v~~l~~~~~g~d~vid~~-g~~~~~~~~~~l~~~G~ 310 (393)
T cd08246 268 EARRFGKAIWDILGGREDPDIVFEHP-GRATFPTSVFVCDRGGM 310 (393)
T ss_pred ccchHHHHHHHHhCCCCCCeEEEECC-chHhHHHHHHHhccCCE
Confidence 0000123445554444 699999984 44666666666655433
No 352
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=78.69 E-value=14 Score=36.43 Aligned_cols=96 Identities=19% Similarity=0.214 Sum_probs=56.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|+ |++|..++.+.+.... -.|++++ ++-+. .+.++++..+.+.-..+.. +.+.
T Consensus 169 ~~VlI~g~-g~vg~~~iqlak~~g~-~~v~~~~--~~~~~-~~~~~~~g~~~vi~~~~~~---~~~~------------- 227 (347)
T cd05278 169 STVAVIGA-GPVGLCAVAGARLLGA-ARIIAVD--SNPER-LDLAKEAGATDIINPKNGD---IVEQ------------- 227 (347)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CEEEEEe--CCHHH-HHHHHHhCCcEEEcCCcch---HHHH-------------
Confidence 58888765 9999999999998731 2455553 23233 2455666544433222111 1111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.++.....+|++++++.|-..+...+..++.+-++.
T Consensus 228 ---i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v 264 (347)
T cd05278 228 ---ILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIA 264 (347)
T ss_pred ---HHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEE
Confidence 1122222458999998766467777788887765543
No 353
>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=78.59 E-value=20 Score=35.44 Aligned_cols=95 Identities=18% Similarity=0.269 Sum_probs=60.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCc-ccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|++|++|..++.+.++. .++|++++.. -+.. +.++++..+.+.-... +....+.
T Consensus 167 ~~vlV~g~~~~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~v~~~~~~~~~~~~~-------------- 227 (341)
T cd08297 167 DWVVISGAGGGLGHLGVQYAKAM--GLRVIAIDVG--DEKL-ELAKELGADAFVDFKKSDDVEAVK-------------- 227 (341)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEeCC--HHHH-HHHHHcCCcEEEcCCCccHHHHHH--------------
Confidence 68999999999999999999987 5677776543 3443 3446677655443221 1112222
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+......+|+|+++..+-..+...+.+++.+-++.
T Consensus 228 ------~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v 262 (341)
T cd08297 228 ------ELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLV 262 (341)
T ss_pred ------HHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEE
Confidence 22222358899986666667777777776654443
No 354
>PRK06940 short chain dehydrogenase; Provisional
Probab=78.41 E-value=17 Score=35.51 Aligned_cols=61 Identities=20% Similarity=0.193 Sum_probs=34.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH---HhhCCCEEEE-eCcccHHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV---KRFKPQVVAV-RNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~---~~f~P~~v~v-~de~~~~~l~~~ 143 (473)
|.+.|.|+ |.||..+.+-+. +.++|+.+. +|.+.+.+.. ++...+...+ .|-.+.+.+.+.
T Consensus 3 k~~lItGa-~gIG~~la~~l~---~G~~Vv~~~--r~~~~~~~~~~~l~~~~~~~~~~~~Dv~d~~~i~~~ 67 (275)
T PRK06940 3 EVVVVIGA-GGIGQAIARRVG---AGKKVLLAD--YNEENLEAAAKTLREAGFDVSTQEVDVSSRESVKAL 67 (275)
T ss_pred CEEEEECC-ChHHHHHHHHHh---CCCEEEEEe--CCHHHHHHHHHHHHhcCCeEEEEEeecCCHHHHHHH
Confidence 45666666 789999988874 368888764 4555544333 3333333332 454444445443
No 355
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=78.41 E-value=13 Score=40.30 Aligned_cols=45 Identities=24% Similarity=0.426 Sum_probs=35.3
Q ss_pred cCCCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHH
Q 012004 70 RKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLA 118 (473)
Q Consensus 70 ~~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~ 118 (473)
..+-..+..|.+.||||=+|+...+++++. .|.|.++. ++.+.-.
T Consensus 73 ~~~~~~~~~VlVvGatG~vG~~iv~~llkr--gf~vra~V--Rd~~~a~ 117 (411)
T KOG1203|consen 73 NNNSKKPTTVLVVGATGKVGRRIVKILLKR--GFSVRALV--RDEQKAE 117 (411)
T ss_pred CCCCCCCCeEEEecCCCchhHHHHHHHHHC--CCeeeeec--cChhhhh
Confidence 344455679999999999999999999997 59999987 4444433
No 356
>cd05288 PGDH Prostaglandin dehydrogenases. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino
Probab=78.30 E-value=14 Score=36.03 Aligned_cols=93 Identities=16% Similarity=0.181 Sum_probs=54.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh-hCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKR-FKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~-f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|++|++|..+..+.++. ..+|++++ ++-+.+ +.+++ +..+.+.-.++. .+.
T Consensus 147 ~~vlI~g~~g~ig~~~~~~a~~~--G~~vi~~~--~~~~~~-~~~~~~~g~~~~~~~~~~---~~~-------------- 204 (329)
T cd05288 147 ETVVVSAAAGAVGSVVGQIAKLL--GARVVGIA--GSDEKC-RWLVEELGFDAAINYKTP---DLA-------------- 204 (329)
T ss_pred CEEEEecCcchHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHhhcCCceEEecCCh---hHH--------------
Confidence 68999999999999999999987 56777765 233332 23344 554433322211 111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.+.++.. ..+|++++...| ..+...+..++.+-++
T Consensus 205 --~~v~~~~~-~~~d~vi~~~g~-~~~~~~~~~l~~~G~~ 240 (329)
T cd05288 205 --EALKEAAP-DGIDVYFDNVGG-EILDAALTLLNKGGRI 240 (329)
T ss_pred --HHHHHhcc-CCceEEEEcchH-HHHHHHHHhcCCCceE
Confidence 11222222 358899986543 5666666666555443
No 357
>PLN02996 fatty acyl-CoA reductase
Probab=78.15 E-value=2.8 Score=45.44 Aligned_cols=36 Identities=19% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCeeEEEEccCChHhHHHHHH-HHhCCCceEEEEEec
Q 012004 75 GPKPISVLGSTGSIGTQTLDI-VAEHEDKFRVVALAA 110 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdV-i~~~pd~f~VvaLaa 110 (473)
..|+|.|.|+||+||+..++- ++..|+.-+|+.|.=
T Consensus 10 ~~k~VlvTGaTGFlG~~ll~~LL~~~~~v~~I~~LvR 46 (491)
T PLN02996 10 ENKTILVTGATGFLAKIFVEKILRVQPNVKKLYLLLR 46 (491)
T ss_pred CCCeEEEeCCCcHHHHHHHHHHHhhCCCCCEEEEEEe
Confidence 347899999999999999976 566788888999874
No 358
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=78.15 E-value=12 Score=35.91 Aligned_cols=43 Identities=23% Similarity=0.366 Sum_probs=32.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
|+|+|.|. |.+|..+..-+.++ ..+|++ ...|.+.+.+...+|
T Consensus 29 k~v~I~G~-G~vG~~~A~~L~~~--G~~Vvv--~D~~~~~~~~~~~~~ 71 (200)
T cd01075 29 KTVAVQGL-GKVGYKLAEHLLEE--GAKLIV--ADINEEAVARAAELF 71 (200)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCEEEE--EcCCHHHHHHHHHHc
Confidence 68999999 79999999998876 678883 345666655554444
No 359
>COG0002 ArgC Acetylglutamate semialdehyde dehydrogenase [Amino acid transport and metabolism]
Probab=77.83 E-value=2.8 Score=44.30 Aligned_cols=34 Identities=21% Similarity=0.462 Sum_probs=28.8
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+|.||+|.|+||..|.+-+.++.+||+ +++...+
T Consensus 1 ~~~kV~IvGasGYtG~EL~rlL~~Hp~-ve~~~~s 34 (349)
T COG0002 1 MMIKVGIVGASGYTGLELLRLLAGHPD-VELILIS 34 (349)
T ss_pred CCceEEEEcCCCCcHHHHHHHHhcCCC-eEEEEee
Confidence 367999999999999999999999997 5654443
No 360
>PLN02775 Probable dihydrodipicolinate reductase
Probab=77.75 E-value=9.7 Score=39.31 Aligned_cols=32 Identities=25% Similarity=0.442 Sum_probs=28.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
.||+|.|++|=.|+.+.+-+.+ +.|++++...
T Consensus 12 i~V~V~Ga~G~MG~~~~~av~~--~~~~Lv~~~~ 43 (286)
T PLN02775 12 IPIMVNGCTGKMGHAVAEAAVS--AGLQLVPVSF 43 (286)
T ss_pred CeEEEECCCChHHHHHHHHHhc--CCCEEEEEec
Confidence 4899999999999999999998 6799998543
No 361
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=77.73 E-value=16 Score=34.04 Aligned_cols=141 Identities=14% Similarity=0.163 Sum_probs=82.6
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh--CCCEEEE-eCcccHHHHHHHHhcCCCCcE---EE--ech-
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAV-RNESLLDEIKEALANVEEKPE---IL--AGE- 157 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f--~P~~v~v-~de~~~~~l~~~l~~~~~~~~---v~--~G~- 157 (473)
.||..|-+.++++ .|.+.-.....+.+.|.+.+++. ..+.+.+ ..+.....|.+.|...+..+. ++ ...
T Consensus 83 avG~~Ta~~l~~~--g~~~~~~~~~~~~~~L~~~i~~~~~~~~~il~~~g~~~~~~l~~~L~~~g~~v~~~~~Y~~~~~~ 160 (239)
T cd06578 83 AVGPKTAEALREA--GLTADFVPEEGDSEGLLELLELQDGKGKRILRPRGGRAREDLAEALRERGAEVDEVEVYRTVPPD 160 (239)
T ss_pred EECHHHHHHHHHc--CCCceeCCCccCHHHHHHHHHhcCCCCCEEEEEcCcchhHHHHHHHHHCCCEEEEEEEEEEECCC
Confidence 6799999999987 67777666777889999998885 4455554 444445678887765442221 11 011
Q ss_pred --hhHHHhhcCCCCCEEE-EecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCe--EeecccchhhHH
Q 012004 158 --QGVIEAARHPDAVTVV-TGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK--ILPADSEHSAIF 232 (473)
Q Consensus 158 --egl~~la~~~~~D~Vv-~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~--IlPVDSEHsAIf 232 (473)
+...+.......|.|+ .+-.++..+. ..+..-....+ .+-.++|-|+-..+.+++.|.+ ++|=.....++.
T Consensus 161 ~~~~~~~~l~~~~~~~iiftS~~~v~~f~---~~~~~~~~~~~-~~~~~~aig~~t~~~l~~~g~~~~~~~~~~~~~~l~ 236 (239)
T cd06578 161 LDAELLELLEEGAIDAVLFTSPSTVRNLL---ELLGKEGRALL-KNVKIAAIGPRTAEALRELGLKVVIVAESPTLEALL 236 (239)
T ss_pred CcHHHHHHHHcCCCcEEEEeCHHHHHHHH---HHHhhhhhhhh-cCCeEEEECHHHHHHHHHcCCCceeeecCCChHHHH
Confidence 1334444445555444 4444444443 33332112223 3346788899999999988864 333222244554
Q ss_pred H
Q 012004 233 Q 233 (473)
Q Consensus 233 Q 233 (473)
+
T Consensus 237 ~ 237 (239)
T cd06578 237 E 237 (239)
T ss_pred h
Confidence 4
No 362
>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase. Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i
Probab=77.73 E-value=12 Score=36.92 Aligned_cols=95 Identities=17% Similarity=0.159 Sum_probs=57.1
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.| .|++|..++.+.++. ..+ |++.+.. -+.. +.++++..+.+.-.++.. +.
T Consensus 166 g~~VlV~g-~g~vg~~~~~la~~~--g~~~v~~~~~s--~~~~-~~~~~~g~~~~~~~~~~~---~~------------- 223 (343)
T cd08235 166 GDTVLVIG-AGPIGLLHAMLAKAS--GARKVIVSDLN--EFRL-EFAKKLGADYTIDAAEED---LV------------- 223 (343)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCcEEEEECCC--HHHH-HHHHHhCCcEEecCCccC---HH-------------
Confidence 36899997 589999999998886 455 5554432 2222 233567765543322211 11
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.+.++.....+|+|++.+.|-..+...+.+++.+-++
T Consensus 224 ---~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~ 261 (343)
T cd08235 224 ---EKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRI 261 (343)
T ss_pred ---HHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 11222233345899999877666677778888766554
No 363
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=77.66 E-value=17 Score=35.23 Aligned_cols=67 Identities=12% Similarity=0.057 Sum_probs=42.0
Q ss_pred CeeEEEEcc--CChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHH
Q 012004 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEAL 144 (473)
Q Consensus 76 ~k~I~ILGS--TGSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l 144 (473)
.|.+.|.|+ |+-||..+..-+.+. .++|+...- .++.+.+.+..+++....+.-.|-.+.+.+++.+
T Consensus 6 ~k~vlItGas~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~~ 75 (260)
T PRK06997 6 GKRILITGLLSNRSIAYGIAKACKRE--GAELAFTYVGDRFKDRITEFAAEFGSDLVFPCDVASDEQIDALF 75 (260)
T ss_pred CcEEEEeCCCCCCcHHHHHHHHHHHC--CCeEEEEccchHHHHHHHHHHHhcCCcceeeccCCCHHHHHHHH
Confidence 368999996 567999998888775 567765421 2455666666666644333334555555555443
No 364
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=77.57 E-value=19 Score=36.73 Aligned_cols=92 Identities=13% Similarity=0.214 Sum_probs=55.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
..+|.|+|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. +.+.+.
T Consensus 187 g~~VlV~G~-G~vG~~a~~~ak~~--G~~~vi~~~~--~~~~~-~~~~~lGa~~~i~~~~~~-~~~~~~----------- 248 (368)
T cd08300 187 GSTVAVFGL-GAVGLAVIQGAKAA--GASRIIGIDI--NPDKF-ELAKKFGATDCVNPKDHD-KPIQQV----------- 248 (368)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCCEEEcccccc-hHHHHH-----------
Confidence 368999985 99999999999987 45 4666543 33444 355778776554222110 012211
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~ 191 (473)
+.++... .+|+|++++-|...+.-.+..++.
T Consensus 249 -----v~~~~~~-g~d~vid~~g~~~~~~~a~~~l~~ 279 (368)
T cd08300 249 -----LVEMTDG-GVDYTFECIGNVKVMRAALEACHK 279 (368)
T ss_pred -----HHHHhCC-CCcEEEECCCChHHHHHHHHhhcc
Confidence 1222222 589999986655666667777744
No 365
>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family. This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,
Probab=77.43 E-value=16 Score=36.59 Aligned_cols=93 Identities=12% Similarity=0.139 Sum_probs=55.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcc-cHHHHHHHHhcCCCCcEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNES-LLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~-~~~~l~~~l~~~~~~~~v~ 154 (473)
.+|.| +++|++|..++.+.+.. ... |++.+ ++-+++ +.++++..+.+.-..+. ...++
T Consensus 176 ~~vlI-~g~g~vG~~~~~~a~~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~v~~~~~~~~~~~~-------------- 235 (350)
T cd08256 176 DVVVL-AGAGPLGLGMIGAARLK--NPKKLIVLD--LKDERL-ALARKFGADVVLNPPEVDVVEKI-------------- 235 (350)
T ss_pred CEEEE-ECCCHHHHHHHHHHHHc--CCcEEEEEc--CCHHHH-HHHHHcCCcEEecCCCcCHHHHH--------------
Confidence 46777 66799999999999986 333 33322 344444 56677776554322211 11222
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.++.....+|+|++.+.|-..+...+.+++.+-++
T Consensus 236 ------~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~ 270 (350)
T cd08256 236 ------KELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRF 270 (350)
T ss_pred ------HHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEE
Confidence 22222235899999876555677778888776543
No 366
>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2. Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical
Probab=77.35 E-value=17 Score=35.89 Aligned_cols=91 Identities=18% Similarity=0.268 Sum_probs=52.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.| +|++|..++.+.+.. .+ +|++.+ ++-++. +.++++.-..+...+++....+
T Consensus 169 ~~vlI~g-~g~vg~~~~~~a~~~--g~~~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~~~~l--------------- 227 (344)
T cd08284 169 DTVAVIG-CGPVGLCAVLSAQVL--GAARVFAVD--PVPERL-ERAAALGAEPINFEDAEPVERV--------------- 227 (344)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCceEEEEc--CCHHHH-HHHHHhCCeEEecCCcCHHHHH---------------
Confidence 6899997 799999999999986 45 566652 222332 3345555321111111111122
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
.++.....+|+++++..|-..+...+..++.+-
T Consensus 228 -----~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g 260 (344)
T cd08284 228 -----REATEGRGADVVLEAVGGAAALDLAFDLVRPGG 260 (344)
T ss_pred -----HHHhCCCCCCEEEECCCCHHHHHHHHHhcccCC
Confidence 222223458999998766556666666665544
No 367
>TIGR01751 crot-CoA-red crotonyl-CoA reductase. The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.
Probab=77.21 E-value=21 Score=36.90 Aligned_cols=113 Identities=15% Similarity=0.142 Sum_probs=63.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccH-HHHHHHHhc-CCCC-cEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLL-DEIKEALAN-VEEK-PEI 153 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~-~~l~~~l~~-~~~~-~~v 153 (473)
.+|.|.|++|.||..++.+.+.+ ..+++.++. +-+. .+.++++....+.-.++... ..+.+.... .... ...
T Consensus 191 ~~vlV~Ga~g~vG~~ai~~ak~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (398)
T TIGR01751 191 DNVLIWGAAGGLGSYATQLARAG--GGNPVAVVS--SPEK-AEYCRELGAEAVIDRNDFGHWGRLPDLNTQAPKEWTKSF 265 (398)
T ss_pred CEEEEEcCCcHHHHHHHHHHHHc--CCeEEEEcC--CHHH-HHHHHHcCCCEEecCCCcchhhccccccccccchhhhcc
Confidence 68999999999999999999987 566776652 3344 35667788776653221110 001000000 0000 000
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
..-.+.+.++.....+|+|++.+ |...+..++.+++.+-++
T Consensus 266 ~~~~~~~~~~~~~~g~d~vld~~-g~~~~~~~~~~l~~~G~~ 306 (398)
T TIGR01751 266 KRFGKRIRELTGGEDPDIVFEHP-GRATFPTSVFVCRRGGMV 306 (398)
T ss_pred hhHHHHHHHHcCCCCceEEEECC-cHHHHHHHHHhhccCCEE
Confidence 01123344444445699999985 446677777777665443
No 368
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=77.18 E-value=19 Score=34.72 Aligned_cols=66 Identities=14% Similarity=0.033 Sum_probs=38.4
Q ss_pred CeeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEec----cCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA----GSNITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa----~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
.|.+.|.|+| +-||..+..-+.+. .++|+...- .++.+.+.+...+..+-.+...|-.+.+.+++.
T Consensus 6 ~k~~lItGas~~~GIG~aia~~la~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~d~~~v~~~ 77 (258)
T PRK07370 6 GKKALVTGIANNRSIAWGIAQQLHAA--GAELGITYLPDEKGRFEKKVRELTEPLNPSLFLPCDVQDDAQIEET 77 (258)
T ss_pred CcEEEEeCCCCCCchHHHHHHHHHHC--CCEEEEEecCcccchHHHHHHHHHhccCcceEeecCcCCHHHHHHH
Confidence 3789999987 67999999888875 566654321 233344433333333323333555555555544
No 369
>PRK13656 trans-2-enoyl-CoA reductase; Provisional
Probab=77.01 E-value=22 Score=38.38 Aligned_cols=104 Identities=14% Similarity=0.153 Sum_probs=61.4
Q ss_pred CCCeeEEEEccCChHhHHH--HHHHHhCCCceEEEEEeccC-------------CHHHHHHHHHhhCCCEEEE-eCcccH
Q 012004 74 DGPKPISVLGSTGSIGTQT--LDIVAEHEDKFRVVALAAGS-------------NITLLADQVKRFKPQVVAV-RNESLL 137 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qt--LdVi~~~pd~f~VvaLaa~~-------------Nv~~L~~q~~~f~P~~v~v-~de~~~ 137 (473)
+++|++.|.|+++.||..+ -.-++ ....|+++...+ |.+.+.+.+++...+...+ .|-.+.
T Consensus 39 ~ggK~aLVTGaSsGIGlA~~IA~al~---~GA~Vi~v~~~~~~~~~~~~tagwy~~~a~~~~a~~~G~~a~~i~~DVss~ 115 (398)
T PRK13656 39 NGPKKVLVIGASSGYGLASRIAAAFG---AGADTLGVFFEKPGTEKKTGTAGWYNSAAFDKFAKAAGLYAKSINGDAFSD 115 (398)
T ss_pred CCCCEEEEECCCchHhHHHHHHHHHH---cCCeEEEEecCcchhhhcccccccchHHHHHHHHHhcCCceEEEEcCCCCH
Confidence 7789999999999999982 22332 378888876432 4455666777765543332 454444
Q ss_pred HHHHHHHhcCCCCcEEEechhhHHHhhcCCCCCEEEEecccc------------cCcHHHHHHHHcCCccc
Q 012004 138 DEIKEALANVEEKPEILAGEQGVIEAARHPDAVTVVTGIVGC------------AGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 138 ~~l~~~l~~~~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~------------aGL~ptl~Ai~~GK~Ia 196 (473)
+.+++.+. .+.+ ..-.+|++|+.+.-. +-|+|+...+. |+.+-
T Consensus 116 E~v~~lie-------------~I~e--~~G~IDiLVnSaA~~~r~~p~~g~~~~s~lKpi~~~~~-~~~~d 170 (398)
T PRK13656 116 EIKQKVIE-------------LIKQ--DLGQVDLVVYSLASPRRTDPKTGEVYRSVLKPIGEPYT-GKTLD 170 (398)
T ss_pred HHHHHHHH-------------HHHH--hcCCCCEEEECCccCCCCCcccCceeeccccccccccc-CCccc
Confidence 44443321 1111 123589999886433 25777777654 44443
No 370
>TIGR03443 alpha_am_amid L-aminoadipate-semialdehyde dehydrogenase. Members of this protein family are L-aminoadipate-semialdehyde dehydrogenase (EC 1.2.1.31), product of the LYS2 gene. It is also called alpha-aminoadipate reductase. In fungi, lysine is synthesized via aminoadipate. Currently, all members of this family are fungal.
Probab=76.95 E-value=6.1 Score=47.23 Aligned_cols=40 Identities=23% Similarity=0.375 Sum_probs=32.5
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCC--CceEEEEEeccCC
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHE--DKFRVVALAAGSN 113 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~p--d~f~VvaLaa~~N 113 (473)
..+++|.|.|+||+||...++-+.+.+ ..++|+++.-..+
T Consensus 969 ~~~~~VlvTGatGflG~~l~~~Ll~~~~~~~~~V~~l~R~~~ 1010 (1389)
T TIGR03443 969 STPITVFLTGATGFLGSFILRDLLTRRSNSNFKVFAHVRAKS 1010 (1389)
T ss_pred CCCceEEEeCCccccHHHHHHHHHhcCCCCCcEEEEEECcCC
Confidence 345899999999999999998877665 5789999975433
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=76.79 E-value=22 Score=35.43 Aligned_cols=96 Identities=16% Similarity=0.133 Sum_probs=53.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.| +|++|..++.+.+... .+ |++.+. +-+. .++++++..+.+.-.++.....+.+
T Consensus 164 ~~vlI~g-~g~vG~~a~~lak~~G--~~~v~~~~~--~~~~-~~~~~~~g~~~vi~~~~~~~~~~~~------------- 224 (343)
T cd05285 164 DTVLVFG-AGPIGLLTAAVAKAFG--ATKVVVTDI--DPSR-LEFAKELGATHTVNVRTEDTPESAE------------- 224 (343)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcC--CcEEEEECC--CHHH-HHHHHHcCCcEEeccccccchhHHH-------------
Confidence 5899976 5899999999999863 44 444432 2222 3445666665544332222111111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
.+.+......+|+|++.+.+-..+...+..++.+-+
T Consensus 225 ---~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 260 (343)
T cd05285 225 ---KIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGT 260 (343)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCE
Confidence 112222223589999985543456666777766544
No 372
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=76.73 E-value=30 Score=36.40 Aligned_cols=56 Identities=16% Similarity=0.299 Sum_probs=37.5
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNES 135 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~ 135 (473)
.+++|+|+|++|.+|.+.-..+++. .++|.+..- +..+.+.+.++ +.++|.++-+.
T Consensus 97 ~~~~I~IiGG~GlmG~slA~~l~~~--G~~V~~~d~-~~~~~~~~~~~--~aDlVilavP~ 152 (374)
T PRK11199 97 DLRPVVIVGGKGQLGRLFAKMLTLS--GYQVRILEQ-DDWDRAEDILA--DAGMVIVSVPI 152 (374)
T ss_pred ccceEEEEcCCChhhHHHHHHHHHC--CCeEEEeCC-CcchhHHHHHh--cCCEEEEeCcH
Confidence 3478999999999999999999886 466666542 22233333332 45788775543
No 373
>TIGR01831 fabG_rel 3-oxoacyl-(acyl-carrier-protein) reductase, putative. This model represents a small, very well conserved family of proteins closely related to the FabG family, TIGR01830, and possibly equal in function. In all completed genomes with a member of this family, a FabG in TIGR01830 is also found.
Probab=76.69 E-value=8.9 Score=35.85 Aligned_cols=40 Identities=20% Similarity=0.230 Sum_probs=28.6
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV 121 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~ 121 (473)
|.|.|+||.||..+..-+.+. .++|+.+ +.++.+.+.+..
T Consensus 1 vlItGas~giG~~~a~~l~~~--G~~v~~~-~~~~~~~~~~~~ 40 (239)
T TIGR01831 1 VLVTGASRGIGRAIANRLAAD--GFEICVH-YHSGRSDAESVV 40 (239)
T ss_pred CEEeCCCchHHHHHHHHHHHC--CCEEEEE-eCCCHHHHHHHH
Confidence 579999999999999999876 5676644 444544444333
No 374
>cd08241 QOR1 Quinone oxidoreductase (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic
Probab=76.65 E-value=15 Score=34.88 Aligned_cols=91 Identities=15% Similarity=0.229 Sum_probs=52.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|++|.+|..+..+.+.. ..+|+..+... +. .+.++++....+.-..+.. +.
T Consensus 141 ~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~~~~--~~-~~~~~~~g~~~~~~~~~~~---~~--------------- 197 (323)
T cd08241 141 ETVLVLGAAGGVGLAAVQLAKAL--GARVIAAASSE--EK-LALARALGADHVIDYRDPD---LR--------------- 197 (323)
T ss_pred CEEEEEcCCchHHHHHHHHHHHh--CCEEEEEeCCH--HH-HHHHHHcCCceeeecCCcc---HH---------------
Confidence 68999999999999999999986 45676664332 22 2233445433322211111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.+.++.....+|.+++.+.| ..+...+.+++.+
T Consensus 198 -~~i~~~~~~~~~d~v~~~~g~-~~~~~~~~~~~~~ 231 (323)
T cd08241 198 -ERVKALTGGRGVDVVYDPVGG-DVFEASLRSLAWG 231 (323)
T ss_pred -HHHHHHcCCCCcEEEEECccH-HHHHHHHHhhccC
Confidence 122233333458999987655 5666666655444
No 375
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=76.56 E-value=15 Score=36.80 Aligned_cols=31 Identities=26% Similarity=0.426 Sum_probs=23.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
||.|.|+||+||.+...-+.+.... .|+++.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~-~v~~~~ 32 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQD-SVVNVD 32 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCC-eEEEec
Confidence 6999999999999999999875322 354443
No 376
>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family. This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous
Probab=76.48 E-value=18 Score=35.82 Aligned_cols=96 Identities=20% Similarity=0.235 Sum_probs=57.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.| +|++|..++.+.+.. .++|+.....++-+++ +.++++.-+.+ -..+.. +.
T Consensus 166 ~~vlI~g-~g~~g~~~~~la~~~--G~~v~~~~~~~~~~~~-~~~~~~g~~~~-~~~~~~---~~--------------- 222 (306)
T cd08258 166 DTVVVFG-PGPIGLLAAQVAKLQ--GATVVVVGTEKDEVRL-DVAKELGADAV-NGGEED---LA--------------- 222 (306)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCEEEEECCCCCHHHH-HHHHHhCCccc-CCCcCC---HH---------------
Confidence 5788865 799999999999988 5777765445554444 45566664433 111111 11
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.+.++.....+|++++.+.+-..+...+..++.+-++.
T Consensus 223 -~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v 261 (306)
T cd08258 223 -ELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIV 261 (306)
T ss_pred -HHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112222223358999998655456666777776655543
No 377
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=76.43 E-value=15 Score=41.44 Aligned_cols=45 Identities=22% Similarity=0.231 Sum_probs=33.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.|++.|.|+||.||..+..-+.+. .++|+.+. +|.+.+.+...++
T Consensus 414 gkvvLVTGasggIG~aiA~~La~~--Ga~Vvi~~--r~~~~~~~~~~~l 458 (676)
T TIGR02632 414 RRVAFVTGGAGGIGRETARRLAAE--GAHVVLAD--LNLEAAEAVAAEI 458 (676)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHhC--CCEEEEEe--CCHHHHHHHHHHH
Confidence 378999999999999999988876 57887764 4555555444443
No 378
>PRK08118 topology modulation protein; Reviewed
Probab=76.38 E-value=1.6 Score=40.44 Aligned_cols=19 Identities=47% Similarity=0.600 Sum_probs=16.7
Q ss_pred CeeEEEEccCChHhHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDI 95 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdV 95 (473)
|+||.|+|..|| |++||--
T Consensus 1 m~rI~I~G~~Gs-GKSTlak 19 (167)
T PRK08118 1 MKKIILIGSGGS-GKSTLAR 19 (167)
T ss_pred CcEEEEECCCCC-CHHHHHH
Confidence 579999999999 9999754
No 379
>PRK07041 short chain dehydrogenase; Provisional
Probab=76.37 E-value=18 Score=33.50 Aligned_cols=60 Identities=18% Similarity=0.161 Sum_probs=37.0
Q ss_pred EEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC--CCE-EEEeCcccHHHHHHH
Q 012004 80 SVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK--PQV-VAVRNESLLDEIKEA 143 (473)
Q Consensus 80 ~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~--P~~-v~v~de~~~~~l~~~ 143 (473)
.|.|+||.||.+...-+.+. .++|+.++ ++.+.+.+...+.+ ... +.-.|-.+...+++.
T Consensus 1 lItGas~~iG~~~a~~l~~~--G~~v~~~~--r~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~ 63 (230)
T PRK07041 1 LVVGGSSGIGLALARAFAAE--GARVTIAS--RSRDRLAAAARALGGGAPVRTAALDITDEAAVDAF 63 (230)
T ss_pred CeecCCChHHHHHHHHHHHC--CCEEEEEe--CCHHHHHHHHHHHhcCCceEEEEccCCCHHHHHHH
Confidence 38999999999999988876 57776653 45566655554432 122 222444444455544
No 380
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=76.25 E-value=24 Score=34.62 Aligned_cols=64 Identities=11% Similarity=-0.020 Sum_probs=39.5
Q ss_pred eeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEeccC--CHHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGS--NITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~--Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
|.+.|.|++ +-||..+-+.+.+. .++|+ +++++ +.+.+.+.+++..-....-.|-.+.+.+++.
T Consensus 11 k~~lItGas~~~GIG~aia~~la~~--G~~V~-l~~r~~~~~~~~~~l~~~~~~~~~~~~Dl~~~~~v~~~ 78 (272)
T PRK08159 11 KRGLILGVANNRSIAWGIAKACRAA--GAELA-FTYQGDALKKRVEPLAAELGAFVAGHCDVTDEASIDAV 78 (272)
T ss_pred CEEEEECCCCCCcHHHHHHHHHHHC--CCEEE-EEcCchHHHHHHHHHHHhcCCceEEecCCCCHHHHHHH
Confidence 789999997 66999999988875 67776 44432 2355555555554223333554444444443
No 381
>PRK06217 hypothetical protein; Validated
Probab=76.19 E-value=1.7 Score=40.31 Aligned_cols=19 Identities=42% Similarity=0.593 Sum_probs=16.8
Q ss_pred CeeEEEEccCChHhHHHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDI 95 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdV 95 (473)
|++|+|.|.+|| |++|+--
T Consensus 1 ~~~I~i~G~~Gs-GKSTla~ 19 (183)
T PRK06217 1 MMRIHITGASGS-GTTTLGA 19 (183)
T ss_pred CeEEEEECCCCC-CHHHHHH
Confidence 578999999999 9999864
No 382
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=75.86 E-value=14 Score=38.73 Aligned_cols=113 Identities=17% Similarity=0.194 Sum_probs=67.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHH------hhCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~------~f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
+.||+|.|. |-||+..+..+.++| +++++|+.- ..+.+-|+-+.+ +|+..-|.+.+... +.-.+
T Consensus 5 ~lrVaI~G~-GrIGr~~~r~~~~~~-~velvaI~D~~~~~~~~a~ll~yDs~~g~~~~~~v~~~~g~~-------l~~~g 75 (338)
T PLN02358 5 KIRIGINGF-GRIGRLVARVVLQRD-DVELVAVNDPFITTEYMTYMFKYDSVHGQWKHHELKVKDDKT-------LLFGE 75 (338)
T ss_pred ceEEEEEee-cHHHHHHHHHHhhCC-CcEEEEEeCCCCCHHHHHHhheeecCCCCcCCCeEEECCCCE-------EEECC
Confidence 359999995 899999999988775 589999875 667777766654 23221232211110 00011
Q ss_pred CCcEEEechhhHHHh-hcCCCCCEEEEecccccCcHHHHHHHHcC-Cccccc
Q 012004 149 EKPEILAGEQGVIEA-ARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIALA 198 (473)
Q Consensus 149 ~~~~v~~G~egl~~l-a~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G-K~IaLA 198 (473)
..+.++.-. .-.++ -...++|+|+.+.-.+.--.-.-.++++| |+|-+.
T Consensus 76 ~~i~v~~~~-~p~~~~w~~~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiS 126 (338)
T PLN02358 76 KPVTVFGIR-NPEDIPWGEAGADFVVESTGVFTDKDKAAAHLKGGAKKVVIS 126 (338)
T ss_pred EEEEEEEcC-CcccCcccccCCCEEEEcccchhhHHHHHHHHHCCCEEEEeC
Confidence 122332211 11111 11247999999877776666666788898 566555
No 383
>cd08252 AL_MDR Arginate lyase and other MDR family members. This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil
Probab=75.71 E-value=22 Score=34.82 Aligned_cols=96 Identities=15% Similarity=0.174 Sum_probs=59.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..+|.|.|++|++|..++.+.+... ..+|++.+... +. .+.++++..+.+. .... .+.+.+
T Consensus 150 g~~vlV~g~~g~vg~~~~~~a~~~G-~~~v~~~~~~~--~~-~~~~~~~g~~~~~-~~~~---~~~~~i----------- 210 (336)
T cd08252 150 GKTLLIIGGAGGVGSIAIQLAKQLT-GLTVIATASRP--ES-IAWVKELGADHVI-NHHQ---DLAEQL----------- 210 (336)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHcC-CcEEEEEcCCh--hh-HHHHHhcCCcEEE-eCCc---cHHHHH-----------
Confidence 4689999999999999999999872 17777765432 22 2334667765543 2111 111111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
... ....+|++++.+.|-..+...+..++.+-++.
T Consensus 211 -----~~~-~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v 245 (336)
T cd08252 211 -----EAL-GIEPVDYIFCLTDTDQHWDAMAELIAPQGHIC 245 (336)
T ss_pred -----Hhh-CCCCCCEEEEccCcHHHHHHHHHHhcCCCEEE
Confidence 111 12358999988766567777777777665443
No 384
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=75.67 E-value=6.4 Score=39.63 Aligned_cols=78 Identities=12% Similarity=0.051 Sum_probs=49.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|+|+||- |++..+.+.+. .++|++.++...-..+.. ......|.. +. .+
T Consensus 1 m~ILvlGGT~e-gr~la~~L~~~--g~~v~~s~~t~~~~~~~~---~~g~~~v~~-g~--------------------l~ 53 (256)
T TIGR00715 1 MTVLLMGGTVD-SRAIAKGLIAQ--GIEILVTVTTSEGKHLYP---IHQALTVHT-GA--------------------LD 53 (256)
T ss_pred CeEEEEechHH-HHHHHHHHHhC--CCeEEEEEccCCcccccc---ccCCceEEE-CC--------------------CC
Confidence 37999999998 99999988865 588988877654332221 111112221 11 13
Q ss_pred hhhHHHhhcCCCCCEEEEecccccC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAG 181 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aG 181 (473)
.+++.++.+..++|+||+|.--+|-
T Consensus 54 ~~~l~~~l~~~~i~~VIDAtHPfA~ 78 (256)
T TIGR00715 54 PQELREFLKRHSIDILVDATHPFAA 78 (256)
T ss_pred HHHHHHHHHhcCCCEEEEcCCHHHH
Confidence 3446666666678888888777664
No 385
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=75.63 E-value=17 Score=34.95 Aligned_cols=73 Identities=19% Similarity=0.254 Sum_probs=48.9
Q ss_pred CCCCCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEeCccc
Q 012004 71 KTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNESL 136 (473)
Q Consensus 71 ~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~--------------~Nv~~L~~q~~~f~P~~v~v~de~~ 136 (473)
..+...++|+|+|+ |++|....+........|+++|+... ...+.+.+.+++.+++.|.++-+..
T Consensus 79 l~~~~~~rV~IIGa-G~iG~~l~~~~~~~~~g~~ivgv~D~d~~~~~~~i~g~~v~~~~~l~~li~~~~iD~ViIa~P~~ 157 (213)
T PRK05472 79 LGLDRTWNVALVGA-GNLGRALLNYNGFEKRGFKIVAAFDVDPEKIGTKIGGIPVYHIDELEEVVKENDIEIGILTVPAE 157 (213)
T ss_pred hCCCCCcEEEEECC-CHHHHHHHHhhhcccCCcEEEEEEECChhhcCCEeCCeEEcCHHHHHHHHHHCCCCEEEEeCCch
Confidence 45556679999995 78899887764432346999998432 1346677888888899888876543
Q ss_pred H-HHHHHHH
Q 012004 137 L-DEIKEAL 144 (473)
Q Consensus 137 ~-~~l~~~l 144 (473)
. .++.+.+
T Consensus 158 ~~~~i~~~l 166 (213)
T PRK05472 158 AAQEVADRL 166 (213)
T ss_pred hHHHHHHHH
Confidence 2 3334433
No 386
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=75.36 E-value=20 Score=33.34 Aligned_cols=93 Identities=16% Similarity=0.192 Sum_probs=52.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|.|++| +|..+..+.+.. ..+|++++.. -+. .+.++++..+.+.-..... ..
T Consensus 135 ~~~vli~g~~~-~G~~~~~~a~~~--g~~v~~~~~~--~~~-~~~~~~~g~~~~~~~~~~~---~~-------------- 191 (271)
T cd05188 135 GDTVLVLGAGG-VGLLAAQLAKAA--GARVIVTDRS--DEK-LELAKELGADHVIDYKEED---LE-------------- 191 (271)
T ss_pred CCEEEEECCCH-HHHHHHHHHHHc--CCeEEEEcCC--HHH-HHHHHHhCCceeccCCcCC---HH--------------
Confidence 35899999988 999999999886 3777776533 222 2334555433332111100 00
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+. ......+|+|++.+.+...+...+.+++.+-+
T Consensus 192 --~~~~-~~~~~~~d~vi~~~~~~~~~~~~~~~l~~~G~ 227 (271)
T cd05188 192 --EELR-LTGGGGADVVIDAVGGPETLAQALRLLRPGGR 227 (271)
T ss_pred --HHHH-HhcCCCCCEEEECCCCHHHHHHHHHhcccCCE
Confidence 1111 22334699999987664455555666654433
No 387
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=75.36 E-value=30 Score=36.62 Aligned_cols=113 Identities=19% Similarity=0.155 Sum_probs=74.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh--CCCEEEEe-CcccHHHHHHHHhcCCCCcEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF--KPQVVAVR-NESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f--~P~~v~v~-de~~~~~l~~~l~~~~~~~~v 153 (473)
-||+|=| -|-||+..++.+.+.+++++|+|+.--...+.++.+.+.- +..|..-. .++.. +.-.+..+++
T Consensus 2 ikV~ING-fGrIGR~v~ra~~~~~~dieVVaInd~t~~~~~A~LlkyDs~hg~f~~~v~~~~~~------~~v~g~~I~v 74 (335)
T COG0057 2 IKVAING-FGRIGRLVARAALERDGDIEVVAINDLTDPDYLAHLLKYDSVHGRFDGEVEVKDDA------LVVNGKGIKV 74 (335)
T ss_pred cEEEEec-CcHHHHHHHHHHHhCCCCeEEEEEecCCCHHHHHHHHhhcccCCCCCCcccccCCe------EEECCceEEE
Confidence 4677776 7999999999999987789999999877889998888753 23333211 11110 0001123556
Q ss_pred Eechh-hHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC--Ccccc
Q 012004 154 LAGEQ-GVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG--KDIAL 197 (473)
Q Consensus 154 ~~G~e-gl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G--K~IaL 197 (473)
+.-.+ ....-.. ..+|+||.+--.+.|-.-.-.-+++| |+|.+
T Consensus 75 ~~~~~p~~l~w~d-~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~i 120 (335)
T COG0057 75 LAERDPANLPWAD-LGVDIVVECTGKFTGREKAEKHLKAGGAKKVLI 120 (335)
T ss_pred EecCChHHCCccc-cCccEEEECCCCccchhhHHHHHHhcCCCEEEE
Confidence 55555 4444443 35899999988888777666667786 66654
No 388
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=75.19 E-value=19 Score=37.39 Aligned_cols=90 Identities=16% Similarity=0.256 Sum_probs=55.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|+|.|+ |.||..++.+.+.. ..+|++++.. -+...+.++++..+.+.-..+ ...+
T Consensus 180 ~~VlV~G~-G~vG~~avq~Ak~~--Ga~Vi~~~~~--~~~~~~~a~~lGa~~~i~~~~--~~~v---------------- 236 (375)
T PLN02178 180 KRLGVNGL-GGLGHIAVKIGKAF--GLRVTVISRS--SEKEREAIDRLGADSFLVTTD--SQKM---------------- 236 (375)
T ss_pred CEEEEEcc-cHHHHHHHHHHHHc--CCeEEEEeCC--hHHhHHHHHhCCCcEEEcCcC--HHHH----------------
Confidence 57888886 99999999999987 4567766433 244456677888766542111 1111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.. ..+|+|+++..+-..+...+.+++.|-++
T Consensus 237 ----~~~~--~~~D~vid~~G~~~~~~~~~~~l~~~G~i 269 (375)
T PLN02178 237 ----KEAV--GTMDFIIDTVSAEHALLPLFSLLKVSGKL 269 (375)
T ss_pred ----HHhh--CCCcEEEECCCcHHHHHHHHHhhcCCCEE
Confidence 1111 14899999854433556666666655443
No 389
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.16 E-value=30 Score=33.37 Aligned_cols=65 Identities=8% Similarity=-0.021 Sum_probs=38.9
Q ss_pred CeeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEeccCC--HHHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSN--ITLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 76 ~k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~N--v~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
.|.+.|.|++ +.||..+..-+.+. .++|+.. +++. .+.+.+.+++++...+.-.|-.+.+.+++.
T Consensus 10 ~k~~lItGas~g~GIG~a~a~~la~~--G~~v~l~-~r~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~ 78 (258)
T PRK07533 10 GKRGLVVGIANEQSIAWGCARAFRAL--GAELAVT-YLNDKARPYVEPLAEELDAPIFLPLDVREPGQLEAV 78 (258)
T ss_pred CCEEEEECCCCCCcHHHHHHHHHHHc--CCEEEEE-eCChhhHHHHHHHHHhhccceEEecCcCCHHHHHHH
Confidence 3789999998 48999999998875 5676544 3321 233455555554223333454554455443
No 390
>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family. This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.
Probab=74.97 E-value=18 Score=35.42 Aligned_cols=90 Identities=22% Similarity=0.289 Sum_probs=55.1
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEech
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAGE 157 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~ 157 (473)
+|.|.|++|++|..+..+.+.. ..+|+..+.. -++. +.++++..+.+.-.++... .++
T Consensus 148 ~vlI~g~~g~vg~~~~~la~~~--G~~vi~~~~~--~~~~-~~~~~~g~~~~~~~~~~~~-~~~---------------- 205 (323)
T TIGR02823 148 PVLVTGATGGVGSLAVAILSKL--GYEVVASTGK--AEEE-DYLKELGASEVIDREDLSP-PGK---------------- 205 (323)
T ss_pred eEEEEcCCcHHHHHHHHHHHHc--CCeEEEEeCC--HHHH-HHHHhcCCcEEEccccHHH-HHH----------------
Confidence 8999999999999999999987 5677765533 2333 5567777755443221110 111
Q ss_pred hhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 158 QGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 158 egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
.+.. ..+|++++.+.| ..+...+..++.+-++
T Consensus 206 ----~~~~-~~~d~vld~~g~-~~~~~~~~~l~~~G~~ 237 (323)
T TIGR02823 206 ----PLEK-ERWAGAVDTVGG-HTLANVLAQLKYGGAV 237 (323)
T ss_pred ----HhcC-CCceEEEECccH-HHHHHHHHHhCCCCEE
Confidence 1111 137888887544 4566666666555443
No 391
>TIGR03022 WbaP_sugtrans Undecaprenyl-phosphate galactose phosphotransferase, WbaP. This model includes the enterobacterial enzymes, where the function is presumed to be identical to the S. typhimurium enzyme as well as a somewhat broader group which are likely to catalyze the same or highly similar reactions based on a phylogenetic tree-building analysis of the broader sugar transferase family. Most of these genes are found within large operons dedicated to the production of complex exopolysaccharides such as the enterobacterial O-antigen. The most likely heterogeneity would be in the precise nature of the sugar molecule transferred.
Probab=74.91 E-value=16 Score=38.85 Aligned_cols=58 Identities=12% Similarity=0.091 Sum_probs=44.8
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCC-ceEEEEEeccC---------------CHHHHHHHHHhhCCCEEEEeCc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAGS---------------NITLLADQVKRFKPQVVAVRNE 134 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~~---------------Nv~~L~~q~~~f~P~~v~v~de 134 (473)
..+++.|+|+. .-|.+.++.++++|+ .|+++|..--. + +.+.+.+++.+.+.|.++.+
T Consensus 124 ~~rrvlIiGag-~~~~~l~~~l~~~~~~g~~vvGfidd~~~~~~~~i~g~pVlg~-~~l~~~i~~~~id~ViIAip 197 (456)
T TIGR03022 124 WGRPAVIIGAG-QNAAILYRALQSNPQLGLRPLAVVDTDPAASGRLLTGLPVVGA-DDALRLYARTRYAYVIVAMP 197 (456)
T ss_pred CCceEEEEeCC-HHHHHHHHHHhhCccCCcEEEEEEeCCccccccccCCCcccCh-hHHHHHHHhCCCCEEEEecC
Confidence 45789999986 558899999988765 69999975321 2 66778888899998887665
No 392
>COG3268 Uncharacterized conserved protein [Function unknown]
Probab=74.89 E-value=16 Score=38.94 Aligned_cols=157 Identities=18% Similarity=0.173 Sum_probs=101.8
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.+.-+.|-||||+.|.=+.+-..++-.+- .-|++|.++|-.....+.|+.-...
T Consensus 5 ~e~d~iiYGAtGy~G~lvae~l~~~g~~~----aLAgRs~~kl~~l~~~LG~~~~~~p---------------------- 58 (382)
T COG3268 5 REYDIIIYGATGYAGGLVAEYLAREGLTA----ALAGRSSAKLDALRASLGPEAAVFP---------------------- 58 (382)
T ss_pred cceeEEEEccccchhHHHHHHHHHcCCch----hhccCCHHHHHHHHHhcCccccccC----------------------
Confidence 34679999999999999999888763332 4457899999988888888664420
Q ss_pred ec-hhhHHHhhcCCCCCEEEEecccc--cCcHHHHHHHHcCCcccccccceeeecccc--chHHHhhcCCeEeec---cc
Q 012004 155 AG-EQGVIEAARHPDAVTVVTGIVGC--AGLKPTVAAIEAGKDIALANKETLIAGGPF--VLPLAHKHNIKILPA---DS 226 (473)
Q Consensus 155 ~G-~egl~~la~~~~~D~Vv~AIvG~--aGL~ptl~Ai~~GK~IaLANKESLV~aG~l--i~~~a~~~~~~IlPV---DS 226 (473)
.| +.++.++++ .+++|+|-+-=+ -|+.=.-+.+.+|-+-+=-.-|..|+==.+ --+.|++.|+.|+|- ||
T Consensus 59 ~~~p~~~~~~~~--~~~VVlncvGPyt~~g~plv~aC~~~GTdY~DiTGEi~~fe~~i~~yh~~A~~~Ga~Ii~~cGFDs 136 (382)
T COG3268 59 LGVPAALEAMAS--RTQVVLNCVGPYTRYGEPLVAACAAAGTDYADITGEIMFFENSIDLYHAQAADAGARIIPGCGFDS 136 (382)
T ss_pred CCCHHHHHHHHh--cceEEEeccccccccccHHHHHHHHhCCCeeeccccHHHHHHHHHHHHHHHHhcCCEEeccCCCCc
Confidence 12 677778775 477888763222 355556677888877665555655542111 124577889999984 77
Q ss_pred chhh--HHHhhcCCCCC------ccceEEEEecCCCCCCCC
Q 012004 227 EHSA--IFQCIQGLPEG------ALRRIILTASGGAFRDWP 259 (473)
Q Consensus 227 EHsA--IfQcL~g~~~~------~v~kiiLTASGGPFr~~~ 259 (473)
=-|- +++|++...+. ..+-++..-+|+=+-.-+
T Consensus 137 IPsDl~v~~l~~~~~~d~~~~~~~t~l~l~s~t~~g~S~GT 177 (382)
T COG3268 137 IPSDLGVYALLKQALPDGTEELIATHLALGSFTGSGISGGT 177 (382)
T ss_pred CccchHHHHHHHhhCcccccchhhhheeeeecccCCccccc
Confidence 6654 47777654444 344455555554443333
No 393
>PF07287 DUF1446: Protein of unknown function (DUF1446); InterPro: IPR010839 This family consists of several bacterial and plant proteins of around 400 residues in length. The function of this family is unknown.
Probab=74.52 E-value=13 Score=39.61 Aligned_cols=99 Identities=32% Similarity=0.379 Sum_probs=60.0
Q ss_pred HHHHHHHhCCCceEEEEEeccCCHHHHHHHHHh------hCCCEEEEeCcccHHHHHHHHhcCCCCcEEEechhhHHHhh
Q 012004 91 QTLDIVAEHEDKFRVVALAAGSNITLLADQVKR------FKPQVVAVRNESLLDEIKEALANVEEKPEILAGEQGVIEAA 164 (473)
Q Consensus 91 qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~------f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G~egl~~la 164 (473)
+.|..++++ +.+|+.=+++.|-..+++.+++ .+.+..+|..+.....+++.+.. +..+.-+...+-+.+.
T Consensus 62 ~~L~~~~~~--gIkvI~NaGg~np~~~a~~v~eia~e~Gl~lkvA~V~gDd~~~~v~~~~~~-g~~~~~l~~~~~l~~~- 137 (362)
T PF07287_consen 62 PLLPAAAEK--GIKVITNAGGLNPAGCADIVREIARELGLSLKVAVVYGDDLKDEVKELLAE-GETIRPLDTGPPLSEW- 137 (362)
T ss_pred HHHHHHHhC--CCCEEEeCCCCCHHHHHHHHHHHHHhcCCCeeEEEEECccchHhHHHHHhC-CCCCccCCCCCCcchh-
Confidence 456666665 6777766777777666666654 35677777777777777776542 1111111111122211
Q ss_pred cCCCCCEEEEecccccCcHHHHHHHHcCCccccc
Q 012004 165 RHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (473)
Q Consensus 165 ~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLA 198 (473)
..+ +..++...|-.|..+|++.|-+|-++
T Consensus 138 ---~~~--~~~a~aylGa~pI~~AL~~GADIVI~ 166 (362)
T PF07287_consen 138 ---DDR--IVSANAYLGAEPIVEALEAGADIVIT 166 (362)
T ss_pred ---ccc--cceEEEecChHHHHHHHHcCCCEEEe
Confidence 111 45667888899999999999876554
No 394
>PLN02740 Alcohol dehydrogenase-like
Probab=74.52 E-value=21 Score=36.71 Aligned_cols=91 Identities=10% Similarity=0.104 Sum_probs=54.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|+|+ |+||..++.+.+.. .. +|+++.. +-++ .+.++++..+.+.-..+.. ..+.+
T Consensus 200 ~~VlV~G~-G~vG~~a~q~ak~~--G~~~Vi~~~~--~~~r-~~~a~~~Ga~~~i~~~~~~-~~~~~------------- 259 (381)
T PLN02740 200 SSVAIFGL-GAVGLAVAEGARAR--GASKIIGVDI--NPEK-FEKGKEMGITDFINPKDSD-KPVHE------------- 259 (381)
T ss_pred CEEEEECC-CHHHHHHHHHHHHC--CCCcEEEEcC--ChHH-HHHHHHcCCcEEEeccccc-chHHH-------------
Confidence 58999996 99999999999986 45 4666543 3333 3455777765543211100 01111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~ 191 (473)
.+.++... .+|+|+++..+...+.-.+.+++.
T Consensus 260 ---~v~~~~~~-g~dvvid~~G~~~~~~~a~~~~~~ 291 (381)
T PLN02740 260 ---RIREMTGG-GVDYSFECAGNVEVLREAFLSTHD 291 (381)
T ss_pred ---HHHHHhCC-CCCEEEECCCChHHHHHHHHhhhc
Confidence 12222222 589999987666666666666654
No 395
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=74.28 E-value=28 Score=35.63 Aligned_cols=91 Identities=15% Similarity=0.195 Sum_probs=55.2
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|+ |+||..++.+.+.. .. +|++... +-++ .+.++++..+.+.-..+.. ..+.
T Consensus 187 ~~VlV~G~-G~iG~~a~q~Ak~~--G~~~Vi~~~~--~~~~-~~~a~~~Ga~~~i~~~~~~-~~~~-------------- 245 (368)
T TIGR02818 187 DTVAVFGL-GGIGLSVIQGARMA--KASRIIAIDI--NPAK-FELAKKLGATDCVNPNDYD-KPIQ-------------- 245 (368)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEcC--CHHH-HHHHHHhCCCeEEcccccc-hhHH--------------
Confidence 58999996 99999999999876 45 5666532 3333 3455778776544221100 1111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~ 191 (473)
+.+.++... .+|+|++++.+-..+.-.+..++.
T Consensus 246 --~~v~~~~~~-g~d~vid~~G~~~~~~~~~~~~~~ 278 (368)
T TIGR02818 246 --EVIVEITDG-GVDYSFECIGNVNVMRAALECCHK 278 (368)
T ss_pred --HHHHHHhCC-CCCEEEECCCCHHHHHHHHHHhhc
Confidence 122233222 589999986655566666777654
No 396
>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases. Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so
Probab=74.27 E-value=28 Score=33.73 Aligned_cols=90 Identities=27% Similarity=0.354 Sum_probs=54.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|+||++|..++.+.+.. ..+|+..+.. -+++ +.++++..+.+.-.++ ....+.
T Consensus 148 ~~vlI~g~~g~vg~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~~~~~~~-~~~~~~--------------- 206 (325)
T cd05280 148 GPVLVTGATGGVGSIAVAILAKL--GYTVVALTGK--EEQA-DYLKSLGASEVLDRED-LLDESK--------------- 206 (325)
T ss_pred CEEEEECCccHHHHHHHHHHHHc--CCEEEEEeCC--HHHH-HHHHhcCCcEEEcchh-HHHHHH---------------
Confidence 58999999999999999999887 4456655432 3333 3446676655532111 000111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
+......+|+|++.+.| ..+...+.++..+-
T Consensus 207 -----~~~~~~~~d~vi~~~~~-~~~~~~~~~l~~~g 237 (325)
T cd05280 207 -----KPLLKARWAGAIDTVGG-DVLANLLKQTKYGG 237 (325)
T ss_pred -----HHhcCCCccEEEECCch-HHHHHHHHhhcCCC
Confidence 11112347999988665 67777777775543
No 397
>PLN02256 arogenate dehydrogenase
Probab=74.23 E-value=14 Score=38.00 Aligned_cols=35 Identities=17% Similarity=0.270 Sum_probs=27.1
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEecc
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAG 111 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~ 111 (473)
+.+++|+|+| .|.||.+...-+++. .++|++..-.
T Consensus 34 ~~~~kI~IIG-~G~mG~slA~~L~~~--G~~V~~~d~~ 68 (304)
T PLN02256 34 SRKLKIGIVG-FGNFGQFLAKTFVKQ--GHTVLATSRS 68 (304)
T ss_pred CCCCEEEEEe-eCHHHHHHHHHHHhC--CCEEEEEECc
Confidence 3456899999 799999999988876 4678876533
No 398
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=74.11 E-value=19 Score=37.33 Aligned_cols=57 Identities=35% Similarity=0.516 Sum_probs=36.4
Q ss_pred CeeEEEEccCChHhHHHH--HHHHh---CCCceEE----------------EEEe--ccCCHHHHHHHHHhhCCCEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTL--DIVAE---HEDKFRV----------------VALA--AGSNITLLADQVKRFKPQVVAVR 132 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL--dVi~~---~pd~f~V----------------vaLa--a~~Nv~~L~~q~~~f~P~~v~v~ 132 (473)
.++|.|.|.||| |+.|+ .++.. .|..-++ +.+- ..-+.+.|.+.+.+.+|+++.+.
T Consensus 148 ~~~ilI~G~tGS-GKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~PD~IivG 226 (319)
T PRK13894 148 HRNILVIGGTGS-GKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMRPDRILVG 226 (319)
T ss_pred CCeEEEECCCCC-CHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCCCCEEEEe
Confidence 478999999999 87776 33333 1211111 2221 23467788888888999998875
Q ss_pred C
Q 012004 133 N 133 (473)
Q Consensus 133 d 133 (473)
.
T Consensus 227 E 227 (319)
T PRK13894 227 E 227 (319)
T ss_pred c
Confidence 3
No 399
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=74.01 E-value=1.9 Score=41.02 Aligned_cols=17 Identities=35% Similarity=0.714 Sum_probs=14.2
Q ss_pred CeeEEEEccCChHhHHHH
Q 012004 76 PKPISVLGSTGSIGTQTL 93 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL 93 (473)
.++++|+|.||| |++++
T Consensus 23 ~~H~~I~G~TGs-GKS~~ 39 (229)
T PF01935_consen 23 NRHIAIFGTTGS-GKSNT 39 (229)
T ss_pred cceEEEECCCCC-CHHHH
Confidence 479999999999 77654
No 400
>PRK13011 formyltetrahydrofolate deformylase; Reviewed
Probab=73.84 E-value=28 Score=35.69 Aligned_cols=130 Identities=15% Similarity=0.165 Sum_probs=75.7
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCC---CceEEEEEec-cCCHHHHHHHHHhhCCCEEEEe--Cc--cc-HHHHHHHHh
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHE---DKFRVVALAA-GSNITLLADQVKRFKPQVVAVR--NE--SL-LDEIKEALA 145 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~p---d~f~VvaLaa-~~Nv~~L~~q~~~f~P~~v~v~--de--~~-~~~l~~~l~ 145 (473)
.++||+||||.+ |++.-.++.... -.++|+++.+ +.++..| |++++-.+..+. ++ .. ...+.+.+.
T Consensus 88 ~~~ri~vl~Sg~--g~nl~al~~~~~~~~~~~~i~~visn~~~~~~l---A~~~gIp~~~~~~~~~~~~~~~~~~~~~l~ 162 (286)
T PRK13011 88 ARPKVLIMVSKF--DHCLNDLLYRWRIGELPMDIVGVVSNHPDLEPL---AAWHGIPFHHFPITPDTKPQQEAQVLDVVE 162 (286)
T ss_pred cCceEEEEEcCC--cccHHHHHHHHHcCCCCcEEEEEEECCccHHHH---HHHhCCCEEEeCCCcCchhhhHHHHHHHHH
Confidence 356999999986 888888886432 2589999866 4455444 888887777652 11 11 112333333
Q ss_pred cCCCCcEEEechhhHH--HhhcCCCCCEEEE----ecccccCcHHHHHHHHcCC-----cccccccceeeeccccchH
Q 012004 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (473)
Q Consensus 146 ~~~~~~~v~~G~egl~--~la~~~~~D~Vv~----AIvG~aGL~ptl~Ai~~GK-----~IaLANKESLV~aG~li~~ 212 (473)
..+.+.-|+.|---+. ++.+.. ..-++| -+--+-|..|...|+.+|. +|-..++| +-+|+++.+
T Consensus 163 ~~~~Dlivlagy~~il~~~~l~~~-~~~iiNiHpSLLP~~rG~~~~~~ai~~G~~~tG~TvH~v~~~--~D~G~Ii~Q 237 (286)
T PRK13011 163 ESGAELVVLARYMQVLSPELCRKL-AGRAINIHHSFLPGFKGAKPYHQAYERGVKLIGATAHYVTDD--LDEGPIIEQ 237 (286)
T ss_pred HhCcCEEEEeChhhhCCHHHHhhc-cCCeEEeccccCCCCCCCcHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcEEE
Confidence 3333444556543322 122222 112333 3455778899999999985 44555554 466777743
No 401
>PRK08309 short chain dehydrogenase; Provisional
Probab=73.51 E-value=66 Score=30.36 Aligned_cols=62 Identities=21% Similarity=0.244 Sum_probs=34.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-C-CEEEE-eCcccHHHHHHHH
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P-QVVAV-RNESLLDEIKEAL 144 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~-P-~~v~v-~de~~~~~l~~~l 144 (473)
++.|+|+||++|. ...-+.+. .|+|..++ ++-+.+.+...+.. + +..++ .|-.+...+++.+
T Consensus 2 ~vlVtGGtG~gg~-la~~L~~~--G~~V~v~~--R~~~~~~~l~~~l~~~~~i~~~~~Dv~d~~sv~~~i 66 (177)
T PRK08309 2 HALVIGGTGMLKR-VSLWLCEK--GFHVSVIA--RREVKLENVKRESTTPESITPLPLDYHDDDALKLAI 66 (177)
T ss_pred EEEEECcCHHHHH-HHHHHHHC--cCEEEEEE--CCHHHHHHHHHHhhcCCcEEEEEccCCCHHHHHHHH
Confidence 5899999998876 44333333 67887764 45555544433231 2 22222 3555555666554
No 402
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.26 E-value=25 Score=35.06 Aligned_cols=89 Identities=17% Similarity=0.249 Sum_probs=53.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|+| +|+||..+..+.+.. .++|++.+. +-+.+ +.++++..+.+.-..+.. +.+.
T Consensus 165 ~~vlV~g-~g~iG~~~~~~a~~~--G~~vi~~~~--~~~~~-~~~~~~g~~~~i~~~~~~---~~~~------------- 222 (333)
T cd08296 165 DLVAVQG-IGGLGHLAVQYAAKM--GFRTVAISR--GSDKA-DLARKLGAHHYIDTSKED---VAEA------------- 222 (333)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEeC--ChHHH-HHHHHcCCcEEecCCCcc---HHHH-------------
Confidence 5899999 899999999999987 567776543 33443 344777765544222211 1111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
+.++ ..+|+++++..+-..+...+.+++.+-
T Consensus 223 ---~~~~---~~~d~vi~~~g~~~~~~~~~~~l~~~G 253 (333)
T cd08296 223 ---LQEL---GGAKLILATAPNAKAISALVGGLAPRG 253 (333)
T ss_pred ---HHhc---CCCCEEEECCCchHHHHHHHHHcccCC
Confidence 1111 247899987533445565666665543
No 403
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=73.13 E-value=23 Score=34.21 Aligned_cols=84 Identities=15% Similarity=0.093 Sum_probs=49.5
Q ss_pred CeeEEEEcc--CChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcE
Q 012004 76 PKPISVLGS--TGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPE 152 (473)
Q Consensus 76 ~k~I~ILGS--TGSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~ 152 (473)
.|.+.|.|+ ++-||..+..-+.+. .++|+...- .++.+.+.+.+++.........|-.+.+.+++.+..
T Consensus 6 ~k~~lITGa~~~~GIG~a~a~~l~~~--G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~Dv~~~~~v~~~~~~------ 77 (261)
T PRK08690 6 GKKILITGMISERSIAYGIAKACREQ--GAELAFTYVVDKLEERVRKMAAELDSELVFRCDVASDDEINQVFAD------ 77 (261)
T ss_pred CcEEEEECCCCCCcHHHHHHHHHHHC--CCEEEEEcCcHHHHHHHHHHHhccCCceEEECCCCCHHHHHHHHHH------
Confidence 368999996 567999998888775 567765321 233345555555544334444565555555544321
Q ss_pred EEechhhHHHhhcCCCCCEEEEec
Q 012004 153 ILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 153 v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
+.+ +....|++|+..
T Consensus 78 -------~~~--~~g~iD~lVnnA 92 (261)
T PRK08690 78 -------LGK--HWDGLDGLVHSI 92 (261)
T ss_pred -------HHH--HhCCCcEEEECC
Confidence 111 124689999873
No 404
>cd01336 MDH_cytoplasmic_cytosolic Cytoplasmic and cytosolic Malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are eukaryotic MDHs localized to the cytoplasm and cytosol. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=73.08 E-value=3.1 Score=42.93 Aligned_cols=42 Identities=21% Similarity=0.333 Sum_probs=30.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCC-----CceEEEEEeccCCHHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHE-----DKFRVVALAAGSNITLL 117 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~p-----d~f~VvaLaa~~Nv~~L 117 (473)
|-||+|.|+||+||.+...-+...+ +..+|+.+--..+.+++
T Consensus 2 ~~kV~I~GAaG~VG~~la~~L~~~~~~~~~~~~el~L~D~~~~~~~~ 48 (325)
T cd01336 2 PIRVLVTGAAGQIAYSLLPMIAKGDVFGPDQPVILHLLDIPPALKAL 48 (325)
T ss_pred CeEEEEECCCCHHHHHHHHHHHhCcccCCCCCcEEEEEEcCCccccc
Confidence 5689999999999999888776543 23578887655454433
No 405
>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR). Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts
Probab=73.05 E-value=25 Score=33.47 Aligned_cols=49 Identities=20% Similarity=0.304 Sum_probs=33.8
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v 129 (473)
.++|.|.|++|++|..++.+.+.+ ..+|+.++-. -+.+ +.++++..+.+
T Consensus 145 g~~vlI~g~~~~~g~~~~~~a~~~--g~~v~~~~~~--~~~~-~~~~~~g~~~~ 193 (325)
T cd08253 145 GETVLVHGGSGAVGHAAVQLARWA--GARVIATASS--AEGA-ELVRQAGADAV 193 (325)
T ss_pred CCEEEEEcCCchHHHHHHHHHHHc--CCEEEEEeCC--HHHH-HHHHHcCCCEE
Confidence 478999999999999999999886 5677665432 2322 33345555544
No 406
>PRK06849 hypothetical protein; Provisional
Probab=72.90 E-value=31 Score=35.79 Aligned_cols=36 Identities=8% Similarity=0.109 Sum_probs=29.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS 112 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~ 112 (473)
.+|+|.|+|+...+|.+...-+.+. .++|+++....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~--G~~Vi~~d~~~ 38 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNA--GHTVILADSLK 38 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHC--CCEEEEEeCCc
Confidence 4689999999999888888888876 78999886554
No 407
>PRK07261 topology modulation protein; Provisional
Probab=72.87 E-value=2.2 Score=39.63 Aligned_cols=18 Identities=39% Similarity=0.643 Sum_probs=16.1
Q ss_pred eeEEEEccCChHhHHHHHH
Q 012004 77 KPISVLGSTGSIGTQTLDI 95 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdV 95 (473)
++|+|.|.+|| |++||--
T Consensus 1 ~ri~i~G~~Gs-GKSTla~ 18 (171)
T PRK07261 1 MKIAIIGYSGS-GKSTLAR 18 (171)
T ss_pred CEEEEEcCCCC-CHHHHHH
Confidence 47999999999 9999964
No 408
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=72.81 E-value=24 Score=36.97 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=30.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQ 127 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~ 127 (473)
++|.|.| +|.||..++.+.+.. ..+++..+ .++-+. .+.++++..+
T Consensus 187 ~~VlV~G-~G~iG~~aiqlAk~~--Ga~~vi~~-d~~~~r-~~~a~~~Ga~ 232 (393)
T TIGR02819 187 STVYIAG-AGPVGLAAAASAQLL--GAAVVIVG-DLNPAR-LAQARSFGCE 232 (393)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCceEEEe-CCCHHH-HHHHHHcCCe
Confidence 5788855 599999999999876 45554432 334344 4567778765
No 409
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=72.75 E-value=11 Score=39.44 Aligned_cols=56 Identities=20% Similarity=0.325 Sum_probs=34.0
Q ss_pred CeeEEEEccCChHhHHHH-HHH-HhCCCceEEEE----------------Ee--------ccCCHHHHHHHHHhhCCCEE
Q 012004 76 PKPISVLGSTGSIGTQTL-DIV-AEHEDKFRVVA----------------LA--------AGSNITLLADQVKRFKPQVV 129 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL-dVi-~~~pd~f~Vva----------------La--------a~~Nv~~L~~q~~~f~P~~v 129 (473)
.++|.|.|.||| |+.|+ ..+ ...|..-+++. +. ..-+.+.|.+.+.+.+|+.+
T Consensus 162 ~~nilI~G~tGS-GKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~pD~I 240 (344)
T PRK13851 162 RLTMLLCGPTGS-GKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMRPDRI 240 (344)
T ss_pred CCeEEEECCCCc-cHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCCCCeE
Confidence 378999999999 87765 333 33332112211 21 12346677777888888887
Q ss_pred EEe
Q 012004 130 AVR 132 (473)
Q Consensus 130 ~v~ 132 (473)
++.
T Consensus 241 ivG 243 (344)
T PRK13851 241 LLG 243 (344)
T ss_pred EEE
Confidence 764
No 410
>TIGR02130 dapB_plant dihydrodipicolinate reductase. This narrow family includes genes from Arabidopsis and Fibrobacter succinogenes (which probably recieved the gene from a plant via lateral gene transfer). The sequences are distantly related to the dihydrodipicolinate reductases from archaea. In Fibrobacter this gene is the only candidate DHPR in the genome.
Probab=72.58 E-value=12 Score=38.38 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=26.8
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEE
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (473)
||+|.|+||-.|+.+.+-+.+ +.|++++.
T Consensus 2 ~V~V~Ga~GkMG~~v~~av~~--~~~~Lv~~ 30 (275)
T TIGR02130 2 QIMVNGCPGKMGKAVAEAADA--AGLEIVPT 30 (275)
T ss_pred eEEEeCCCChHHHHHHHHHhc--CCCEEEee
Confidence 799999999999999999988 57999996
No 411
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=72.55 E-value=19 Score=32.95 Aligned_cols=46 Identities=22% Similarity=0.260 Sum_probs=41.3
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
.||++.+..+-+. ..|+|+-|-...-.+.+.+.+++.+|+.|+++.
T Consensus 13 diGkniv~~~L~~-~GfeVidLG~~v~~e~~v~aa~~~~adiVglS~ 58 (128)
T cd02072 13 AVGNKILDHAFTE-AGFNVVNLGVLSPQEEFIDAAIETDADAILVSS 58 (128)
T ss_pred HHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 5999999888774 689999999888999999999999999999865
No 412
>smart00829 PKS_ER Enoylreductase. Enoylreductase in Polyketide synthases.
Probab=72.51 E-value=28 Score=32.45 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=31.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P 126 (473)
.+|.|+|++|++|..+..+.+.+ ..+|++.+- +-+. .+++++|..
T Consensus 106 ~~vlv~g~~~~~g~~~~~~a~~~--g~~v~~~~~--~~~~-~~~~~~~g~ 150 (288)
T smart00829 106 ESVLIHAAAGGVGQAAIQLAQHL--GAEVFATAG--SPEK-RDFLRELGI 150 (288)
T ss_pred CEEEEecCCcHHHHHHHHHHHHc--CCEEEEEeC--CHHH-HHHHHHcCC
Confidence 58999999999999999998876 556766642 2233 233466654
No 413
>TIGR00655 PurU formyltetrahydrofolate deformylase. This model describes formyltetrahydrofolate deformylases. The enzyme is a homohexamer. Sequences from a related enzyme formyl tetrahydrofolate-specific enzyme, phosphoribosylglycinamide formyltransferase, serve as an outgroup for phylogenetic analysis. Putative members of this family, scoring below the trusted cutoff, include a sequence from Rhodobacter capsulatus that lacks an otherwise conserved C-terminal region.
Probab=72.48 E-value=27 Score=35.67 Aligned_cols=132 Identities=16% Similarity=0.166 Sum_probs=77.2
Q ss_pred CCCeeEEEEccCChHhHHHHHHHHhCCC---ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcc-----cHHHHHHHHh
Q 012004 74 DGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNES-----LLDEIKEALA 145 (473)
Q Consensus 74 ~~~k~I~ILGSTGSIG~qtLdVi~~~pd---~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~-----~~~~l~~~l~ 145 (473)
+.++||+||.|.+ |++.-+++.+..+ +.+|+.+.+++ ..+...|++++-.+..+.... ...++-+.+.
T Consensus 82 ~~~~ki~vl~Sg~--g~nl~~l~~~~~~g~l~~~i~~visn~--~~~~~~A~~~gIp~~~~~~~~~~~~~~e~~~~~~l~ 157 (280)
T TIGR00655 82 DKLKRVAILVSKE--DHCLGDLLWRWYSGELDAEIALVISNH--EDLRSLVERFGIPFHYIPATKDNRVEHEKRQLELLK 157 (280)
T ss_pred CCCcEEEEEEcCC--ChhHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEcCCCCcchhhhHHHHHHHHH
Confidence 4568999999977 8999888887543 36888876554 344456888888887765321 1122333333
Q ss_pred cCCCCcEEEechhhHH--HhhcCCCCCEEEEe----cccccCcHHHHHHHHcCC-----cccccccceeeeccccchH
Q 012004 146 NVEEKPEILAGEQGVI--EAARHPDAVTVVTG----IVGCAGLKPTVAAIEAGK-----DIALANKETLIAGGPFVLP 212 (473)
Q Consensus 146 ~~~~~~~v~~G~egl~--~la~~~~~D~Vv~A----IvG~aGL~ptl~Ai~~GK-----~IaLANKESLV~aG~li~~ 212 (473)
..+.+.-|+.|---+. ++.+..+- -++|- +--+-|..|...|+++|. +|=..|.| +-.|+++.+
T Consensus 158 ~~~~Dlivlagym~il~~~~l~~~~~-~iINiHpSLLP~f~G~~p~~~ai~~G~k~tG~TvH~V~e~--lD~GpII~Q 232 (280)
T TIGR00655 158 QYQVDLVVLAKYMQILSPDFVKRYPN-KIINIHHSFLPAFIGANPYQRAYERGVKIIGATAHYVTEE--LDEGPIIEQ 232 (280)
T ss_pred HhCCCEEEEeCchhhCCHHHHhhccC-CEEEecCCcCCCCCCcCHHHHHHHcCCCeEEEEEEEEcCC--CcCCCeEEE
Confidence 3333344455432221 11221211 23332 345788999999999986 34455554 356777743
No 414
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=72.43 E-value=5 Score=39.05 Aligned_cols=31 Identities=23% Similarity=0.362 Sum_probs=24.6
Q ss_pred EEEEccCChHhHHHHHHHHhCCCceEEEEEec
Q 012004 79 ISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA 110 (473)
Q Consensus 79 I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa 110 (473)
|.|.|+||+||.....-+.+... .+|+++.-
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~-~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGI-TDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCC-ceEEEEec
Confidence 67999999999999999988642 25776643
No 415
>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.
Probab=72.37 E-value=38 Score=33.31 Aligned_cols=96 Identities=15% Similarity=0.190 Sum_probs=58.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..+|.|.|++|++|..++.+.+.. -.++|++.+... ++ .++++++..+.+.-.++. +.+.+
T Consensus 149 g~~vlV~ga~g~vg~~~~~~ak~~-~G~~vi~~~~~~--~~-~~~l~~~g~~~~~~~~~~----~~~~i----------- 209 (336)
T TIGR02817 149 KRALLIIGGAGGVGSILIQLARQL-TGLTVIATASRP--ES-QEWVLELGAHHVIDHSKP----LKAQL----------- 209 (336)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHh-CCCEEEEEcCcH--HH-HHHHHHcCCCEEEECCCC----HHHHH-----------
Confidence 358999999999999999999863 146787765432 33 344467777665432221 22211
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
.++ ....+|+|++.+.|-..+...+..++.+-++.
T Consensus 210 -----~~~-~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v 244 (336)
T TIGR02817 210 -----EKL-GLEAVSYVFSLTHTDQHFKEIVELLAPQGRFA 244 (336)
T ss_pred -----HHh-cCCCCCEEEEcCCcHHHHHHHHHHhccCCEEE
Confidence 121 12358889886655455666677776654543
No 416
>PRK05599 hypothetical protein; Provisional
Probab=72.36 E-value=33 Score=32.84 Aligned_cols=43 Identities=19% Similarity=0.187 Sum_probs=30.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
|.+.|.|+|+-||.....-+.+ ..+|+.++ +|.+.+.+.+++.
T Consensus 1 ~~vlItGas~GIG~aia~~l~~---g~~Vil~~--r~~~~~~~~~~~l 43 (246)
T PRK05599 1 MSILILGGTSDIAGEIATLLCH---GEDVVLAA--RRPEAAQGLASDL 43 (246)
T ss_pred CeEEEEeCccHHHHHHHHHHhC---CCEEEEEe--CCHHHHHHHHHHH
Confidence 4689999999999999887763 57776653 5666665555443
No 417
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=72.31 E-value=27 Score=35.52 Aligned_cols=92 Identities=15% Similarity=0.134 Sum_probs=54.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|.|.|+ |++|..++.+.+.. .. .|++... +-+++ +.++++..+.+.-.++.. +.
T Consensus 188 ~~vlI~g~-g~vG~~~~~la~~~--G~~~v~~~~~--~~~k~-~~~~~~g~~~~i~~~~~~---~~-------------- 244 (365)
T cd08278 188 SSIAVFGA-GAVGLAAVMAAKIA--GCTTIIAVDI--VDSRL-ELAKELGATHVINPKEED---LV-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCcEEecCCCcC---HH--------------
Confidence 68999975 99999999999987 44 3554432 33343 455777766554322211 11
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+.++. ...+|+|++++-+-..+...+..++.+-+
T Consensus 245 --~~v~~~~-~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 280 (365)
T cd08278 245 --AAIREIT-GGGVDYALDTTGVPAVIEQAVDALAPRGT 280 (365)
T ss_pred --HHHHHHh-CCCCcEEEECCCCcHHHHHHHHHhccCCE
Confidence 1122222 34689999986443445566666655444
No 418
>PRK07578 short chain dehydrogenase; Provisional
Probab=72.18 E-value=14 Score=33.93 Aligned_cols=29 Identities=24% Similarity=0.520 Sum_probs=24.7
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
++.|.|+||.||....+.+.+. ++|+.++
T Consensus 2 ~vlItGas~giG~~la~~l~~~---~~vi~~~ 30 (199)
T PRK07578 2 KILVIGASGTIGRAVVAELSKR---HEVITAG 30 (199)
T ss_pred eEEEEcCCcHHHHHHHHHHHhc---CcEEEEe
Confidence 6999999999999999988875 6777664
No 419
>PF06506 PrpR_N: Propionate catabolism activator; InterPro: IPR010524 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents a domain found at the N terminus of several sigma54- dependent transcriptional activators including PrpR, which activates catabolism of propionate. In Salmonella enterica subsp. enterica serovar Typhimurium, PrpR acts as a sensor of 2-methylcitrate (2-MC), an intermediate of the 2-methylcitric acid cycle used by this bacterium to convert propionate to pyruvate []. ; GO: 0000156 two-component response regulator activity, 0003677 DNA binding, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay); PDB: 2Q5C_A 2PJU_A.
Probab=72.16 E-value=12 Score=34.86 Aligned_cols=62 Identities=16% Similarity=0.177 Sum_probs=43.4
Q ss_pred CCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHhhc
Q 012004 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQCIQ 236 (473)
Q Consensus 168 ~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQcL~ 236 (473)
+.++..-.+..-.-+...+.-++. ..=-.|+||..+.+.|+++|..-++++|.-.+|.+.|.
T Consensus 100 ~~~i~~~~~~~~~e~~~~i~~~~~-------~G~~viVGg~~~~~~A~~~gl~~v~i~sg~esi~~Al~ 161 (176)
T PF06506_consen 100 GVDIKIYPYDSEEEIEAAIKQAKA-------EGVDVIVGGGVVCRLARKLGLPGVLIESGEESIRRALE 161 (176)
T ss_dssp T-EEEEEEESSHHHHHHHHHHHHH-------TT--EEEESHHHHHHHHHTTSEEEESS--HHHHHHHHH
T ss_pred CCceEEEEECCHHHHHHHHHHHHH-------cCCcEEECCHHHHHHHHHcCCcEEEEEecHHHHHHHHH
Confidence 466777776666666665554443 22346778888999999999999999999999999886
No 420
>PRK05678 succinyl-CoA synthetase subunit alpha; Validated
Probab=72.09 E-value=29 Score=35.77 Aligned_cols=58 Identities=14% Similarity=0.118 Sum_probs=37.9
Q ss_pred CCCCeeEEEEccCChHhHHHHHHHHhC---------CC--ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 73 WDGPKPISVLGSTGSIGTQTLDIVAEH---------ED--KFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 73 ~~~~k~I~ILGSTGSIG~qtLdVi~~~---------pd--~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
|+..-||+|-|-||++|...++-+.++ |. .=+|.++.+..+++.+-+.. .|+.+.+.-
T Consensus 5 ~~~~~~~~v~~~~~~~g~~~l~~l~~~g~~~v~pVnp~~~~~~v~G~~~y~sv~dlp~~~---~~DlAvi~v 73 (291)
T PRK05678 5 INKDTKVIVQGITGKQGTFHTEQMLAYGTNIVGGVTPGKGGTTVLGLPVFNTVAEAVEAT---GANASVIYV 73 (291)
T ss_pred ecCCCeEEEeCCCchHHHHHHHHHHHCCCCEEEEECCCCCCCeEeCeeccCCHHHHhhcc---CCCEEEEEc
Confidence 566679999999999999999999885 22 12344455555555554311 256665543
No 421
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=71.96 E-value=13 Score=30.04 Aligned_cols=55 Identities=24% Similarity=0.390 Sum_probs=35.6
Q ss_pred CeeEEEEccCChHhHHHHH--HHHhCCCce-EEEEEeccC-------------------------CHHHHHHHHHhhCCC
Q 012004 76 PKPISVLGSTGSIGTQTLD--IVAEHEDKF-RVVALAAGS-------------------------NITLLADQVKRFKPQ 127 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLd--Vi~~~pd~f-~VvaLaa~~-------------------------Nv~~L~~q~~~f~P~ 127 (473)
...+.|.|.+|| |++|+- ++....... .++.+++.. ..+.+.+.++..+|.
T Consensus 2 ~~~~~l~G~~G~-GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (148)
T smart00382 2 GEVILIVGPPGS-GKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLKPD 80 (148)
T ss_pred CCEEEEECCCCC-cHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcCCC
Confidence 357999999999 998876 555554442 456555543 344556666666665
Q ss_pred EEEE
Q 012004 128 VVAV 131 (473)
Q Consensus 128 ~v~v 131 (473)
.+.+
T Consensus 81 viii 84 (148)
T smart00382 81 VLIL 84 (148)
T ss_pred EEEE
Confidence 5555
No 422
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.70 E-value=28 Score=34.90 Aligned_cols=93 Identities=10% Similarity=0.224 Sum_probs=55.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCc-ccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNE-SLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de-~~~~~l~~~l~~~~~~~~v 153 (473)
.++|.|.| +|+||..++.+.+.. ..+ |++... +-+.+ +.++++..+.+.-..+ +....
T Consensus 167 g~~vlI~g-~g~iG~~~~~lak~~--G~~~v~~~~~--~~~~~-~~~~~~g~~~~v~~~~~~~~~~-------------- 226 (351)
T cd08285 167 GDTVAVFG-IGPVGLMAVAGARLR--GAGRIIAVGS--RPNRV-ELAKEYGATDIVDYKNGDVVEQ-------------- 226 (351)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCceEecCCCCCHHHH--------------
Confidence 36899997 699999999999876 343 444332 22332 5566777654432211 11111
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.++.....+|++++++.|-..+...+.+++.+-+
T Consensus 227 ------i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~ 261 (351)
T cd08285 227 ------ILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGT 261 (351)
T ss_pred ------HHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCE
Confidence 22222223589999987765566666777766544
No 423
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=71.55 E-value=28 Score=37.89 Aligned_cols=116 Identities=9% Similarity=0.055 Sum_probs=65.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.|++.|+|+ |.+|+.....+.+. .++|+. .+++.+.+.+.+.+++...+. +
T Consensus 332 ~k~vlIiGa-GgiG~aia~~L~~~--G~~V~i--~~R~~~~~~~la~~~~~~~~~---------~--------------- 382 (477)
T PRK09310 332 NQHVAIVGA-GGAAKAIATTLARA--GAELLI--FNRTKAHAEALASRCQGKAFP---------L--------------- 382 (477)
T ss_pred CCEEEEEcC-cHHHHHHHHHHHHC--CCEEEE--EeCCHHHHHHHHHHhccceec---------h---------------
Confidence 368999995 89999999988876 456543 357777776666655421110 0
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc-CCcccccccceeeeccccchHHHhhcCCeEeecccchhhHHHh
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA-GKDIALANKETLIAGGPFVLPLAHKHNIKILPADSEHSAIFQC 234 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~-GK~IaLANKESLV~aG~li~~~a~~~~~~IlPVDSEHsAIfQc 234 (473)
.++....++|+||++...-.-+.. .+.. =-++.-..+|| -+++.|++.|+++ +|--.=-++|.
T Consensus 383 -----~~~~~l~~~DiVInatP~g~~~~~---~l~~~v~D~~Y~P~~T------~ll~~A~~~G~~~--~~G~~Ml~~Qa 446 (477)
T PRK09310 383 -----ESLPELHRIDIIINCLPPSVTIPK---AFPPCVVDINTLPKHS------PYTQYARSQGSSI--IYGYEMFAEQA 446 (477)
T ss_pred -----hHhcccCCCCEEEEcCCCCCcchh---HHhhhEEeccCCCCCC------HHHHHHHHCcCEE--ECcHHHHHHHH
Confidence 011112468999999865433321 1110 01111222222 2568888888664 36555555555
Q ss_pred hc
Q 012004 235 IQ 236 (473)
Q Consensus 235 L~ 236 (473)
..
T Consensus 447 ~~ 448 (477)
T PRK09310 447 LL 448 (477)
T ss_pred HH
Confidence 43
No 424
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=71.33 E-value=9.7 Score=39.61 Aligned_cols=100 Identities=19% Similarity=0.216 Sum_probs=56.3
Q ss_pred CeeEEEEccCChHhHHHH--HHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 76 PKPISVLGSTGSIGTQTL--DIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL--dVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
.+.|+|.|.||| |+.|+ .++...|+.-+|+.+ -...|+. ...+|..+.+..... +.+ ...
T Consensus 160 ~~nili~G~tgS-GKTTll~aL~~~ip~~~ri~ti--Ed~~El~----l~~~~n~~~~~~~~~---------~~~-~~~- 221 (332)
T PRK13900 160 KKNIIISGGTST-GKTTFTNAALREIPAIERLITV--EDAREIV----LSNHPNRVHLLASKG---------GQG-RAK- 221 (332)
T ss_pred CCcEEEECCCCC-CHHHHHHHHHhhCCCCCeEEEe--cCCCccc----cccCCCEEEEEecCC---------CCC-cCc-
Confidence 579999999999 88776 345667877777654 2222322 123466665421110 000 001
Q ss_pred EechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
...+-+.+.+-..++|.+|.+=+.-.-....+.|+..|..
T Consensus 222 -~~~~~ll~~~LR~~PD~IivGEiR~~ea~~~l~a~~tGh~ 261 (332)
T PRK13900 222 -VTTQDLIEACLRLRPDRIIVGELRGAEAFSFLRAINTGHP 261 (332)
T ss_pred -CcHHHHHHHHhccCCCeEEEEecCCHHHHHHHHHHHcCCC
Confidence 1223334434445789888775554444567778888865
No 425
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=70.88 E-value=30 Score=34.22 Aligned_cols=50 Identities=12% Similarity=0.213 Sum_probs=34.4
Q ss_pred eeEEEE-ccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEE
Q 012004 77 KPISVL-GSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAV 131 (473)
Q Consensus 77 k~I~IL-GSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v 131 (473)
.++.|. |++|++|..++.+.+.. ..+|++.+.. -++ .+.++++..+.+.-
T Consensus 144 ~~vlv~~~g~g~vG~~a~q~a~~~--G~~vi~~~~~--~~~-~~~~~~~g~~~~i~ 194 (324)
T cd08291 144 AKAVVHTAAASALGRMLVRLCKAD--GIKVINIVRR--KEQ-VDLLKKIGAEYVLN 194 (324)
T ss_pred CcEEEEccCccHHHHHHHHHHHHc--CCEEEEEeCC--HHH-HHHHHHcCCcEEEE
Confidence 356666 99999999999999876 4577775432 233 34556677666554
No 426
>PTZ00354 alcohol dehydrogenase; Provisional
Probab=70.86 E-value=40 Score=32.78 Aligned_cols=96 Identities=9% Similarity=0.116 Sum_probs=56.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.|++|.+|..++.+.+.. ..+++..+ ++-+.+. .++++..+.+.-... ...+.+
T Consensus 142 ~~vlI~ga~g~~g~~~~~~a~~~--g~~v~~~~--~~~~~~~-~~~~~g~~~~~~~~~--~~~~~~-------------- 200 (334)
T PTZ00354 142 QSVLIHAGASGVGTAAAQLAEKY--GAATIITT--SSEEKVD-FCKKLAAIILIRYPD--EEGFAP-------------- 200 (334)
T ss_pred CEEEEEcCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHHH-HHHHcCCcEEEecCC--hhHHHH--------------
Confidence 58999999999999999999987 45555433 2333333 335566654432211 110111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
.+.++.....+|++++.+ |-..+...+.++..+-++.
T Consensus 201 --~~~~~~~~~~~d~~i~~~-~~~~~~~~~~~l~~~g~~i 237 (334)
T PTZ00354 201 --KVKKLTGEKGVNLVLDCV-GGSYLSETAEVLAVDGKWI 237 (334)
T ss_pred --HHHHHhCCCCceEEEECC-chHHHHHHHHHhccCCeEE
Confidence 122222334589999876 5456677777776655544
No 427
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.70 E-value=42 Score=32.48 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=45.9
Q ss_pred CeeEEEEccCC--hHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCC
Q 012004 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK 150 (473)
Q Consensus 76 ~k~I~ILGSTG--SIG~qtLdVi~~~pd~f~VvaLaa~~Nv---~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~ 150 (473)
.|.+.|.|+|+ -||..+-.-+.+. .++|+.. + +|- +.+.+...++...++.-.|-.+.+.+++.+.
T Consensus 8 ~k~~lITGas~~~GIG~a~a~~la~~--G~~v~~~-~-r~~~~~~~~~~l~~~~g~~~~~~~Dv~~~~~v~~~~~----- 78 (260)
T PRK06603 8 GKKGLITGIANNMSISWAIAQLAKKH--GAELWFT-Y-QSEVLEKRVKPLAEEIGCNFVSELDVTNPKSISNLFD----- 78 (260)
T ss_pred CcEEEEECCCCCcchHHHHHHHHHHc--CCEEEEE-e-CchHHHHHHHHHHHhcCCceEEEccCCCHHHHHHHHH-----
Confidence 37899999996 5999988777765 5676643 3 442 2233333333333333345555445544331
Q ss_pred cEEEechhhHHHhhcCCCCCEEEEec
Q 012004 151 PEILAGEQGVIEAARHPDAVTVVTGI 176 (473)
Q Consensus 151 ~~v~~G~egl~~la~~~~~D~Vv~AI 176 (473)
.+.+ +....|++|+..
T Consensus 79 --------~~~~--~~g~iDilVnna 94 (260)
T PRK06603 79 --------DIKE--KWGSFDFLLHGM 94 (260)
T ss_pred --------HHHH--HcCCccEEEEcc
Confidence 1111 224689999853
No 428
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=70.36 E-value=20 Score=30.40 Aligned_cols=87 Identities=22% Similarity=0.252 Sum_probs=51.5
Q ss_pred hHhHHHHHH-HHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC--cccHH---HHHHHHhcCCCCcEEEechhh-
Q 012004 87 SIGTQTLDI-VAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLD---EIKEALANVEEKPEILAGEQG- 159 (473)
Q Consensus 87 SIG~qtLdV-i~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d--e~~~~---~l~~~l~~~~~~~~v~~G~eg- 159 (473)
.+|...+.- ++++ .|+|.-+-+..+.+.+.+++++++|+.|+++- ..... ++-+..+....++.++.|--.
T Consensus 14 ~lGl~~la~~l~~~--G~~v~~~d~~~~~~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~~~ 91 (121)
T PF02310_consen 14 PLGLLYLAAYLRKA--GHEVDILDANVPPEELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGPHA 91 (121)
T ss_dssp SHHHHHHHHHHHHT--TBEEEEEESSB-HHHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEESSS
T ss_pred hHHHHHHHHHHHHC--CCeEEEECCCCCHHHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECCch
Confidence 456555544 3443 88998887777779999999999999999854 22222 233334444445555444321
Q ss_pred --H-HHhhcC-CCCCEEEEe
Q 012004 160 --V-IEAARH-PDAVTVVTG 175 (473)
Q Consensus 160 --l-~~la~~-~~~D~Vv~A 175 (473)
. .++.+. +.+|.|+.+
T Consensus 92 t~~~~~~l~~~~~~D~vv~G 111 (121)
T PF02310_consen 92 TADPEEILREYPGIDYVVRG 111 (121)
T ss_dssp GHHHHHHHHHHHTSEEEEEE
T ss_pred hcChHHHhccCcCcceecCC
Confidence 1 122322 567887765
No 429
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=70.27 E-value=39 Score=29.67 Aligned_cols=45 Identities=9% Similarity=0.141 Sum_probs=38.2
Q ss_pred HhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 88 IGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 88 IG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
||.......-+. ..|+|+-|-...-.+.+.+.+.+.+|++|+++.
T Consensus 14 lG~~~~~~~l~~-~G~~vi~lG~~vp~e~~~~~a~~~~~d~V~iS~ 58 (122)
T cd02071 14 RGAKVIARALRD-AGFEVIYTGLRQTPEEIVEAAIQEDVDVIGLSS 58 (122)
T ss_pred HHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcc
Confidence 677777666543 589999999999999999999999999999964
No 430
>PRK09189 uroporphyrinogen-III synthase; Validated
Probab=70.24 E-value=52 Score=31.75 Aligned_cols=145 Identities=13% Similarity=0.096 Sum_probs=87.2
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC-C--CEEEEeCcccHHHHHHHHhcCCCCc---EEEe-----
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK-P--QVVAVRNESLLDEIKEALANVEEKP---EILA----- 155 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~-P--~~v~v~de~~~~~l~~~l~~~~~~~---~v~~----- 155 (473)
.||..|-+.++++ .|..+ .....+.+.|++...... + +.+.+..+...+.|.+.|...|..+ .++-
T Consensus 80 aVG~~Ta~~l~~~--G~~~~-~~~~~~~e~L~~~~~~~~~~~~~vL~~rg~~~r~~l~~~L~~~G~~v~~~~vY~~~~~~ 156 (240)
T PRK09189 80 AVGEATAEAAREL--GFRHV-IEGGGDGVRLAETVAAALAPTARLLYLAGRPRAPVFEDRLAAAGIPFRVAECYDMLPVM 156 (240)
T ss_pred EEcHHHHHHHHHc--CCCCC-cCCCCCHHHHHHHHHHhcCCCCcEEEeccCcccchhHHHHHhCCCeeEEEEEEEeecCC
Confidence 4799999999987 56543 345567888887766542 2 3555566656667887776555332 2321
Q ss_pred -chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcC-CeE-eecccchhhHH
Q 012004 156 -GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHN-IKI-LPADSEHSAIF 232 (473)
Q Consensus 156 -G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~-~~I-lPVDSEHsAIf 232 (473)
..+-+.++....++|.|+..-.- ++.-.+..+...+.-..-++-.+||=|+-+.+.+++.+ .++ ++=.....+++
T Consensus 157 ~~~~~~~~~l~~~~~d~i~f~S~~--~~~~f~~~~~~~~~~~~l~~~~~v~Ig~~ta~al~~~~~~~~~ia~~~t~~~l~ 234 (240)
T PRK09189 157 YSPATLSAILGGAPFDAVLLYSRV--AARRFFALMRLSIAPPADEKTRFLCLSARVAAALPASLRAQALIAAMPDEKSLL 234 (240)
T ss_pred CChHHHHHHHhcCCCCEEEEeCHH--HHHHHHHHHhhhcCcccccccCeEEeCHHHHHHHhhccccceeecCCCCHHHHH
Confidence 12234555566678988776533 34544555533221122345678999999988888764 233 44444456676
Q ss_pred Hhhc
Q 012004 233 QCIQ 236 (473)
Q Consensus 233 QcL~ 236 (473)
.+|.
T Consensus 235 ~~l~ 238 (240)
T PRK09189 235 SLLS 238 (240)
T ss_pred HHhh
Confidence 6664
No 431
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=70.09 E-value=47 Score=32.72 Aligned_cols=63 Identities=14% Similarity=0.024 Sum_probs=39.9
Q ss_pred eeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 77 KPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa~~Nv---~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
|.+.|.|++ +-||..+...+.+. .++|+.. + +|- +.+.+...++..+.....|-.+.+.+++.
T Consensus 6 k~~lItGas~~~GIG~aiA~~la~~--G~~Vil~-~-r~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~~ 73 (274)
T PRK08415 6 KKGLIVGVANNKSIAYGIAKACFEQ--GAELAFT-Y-LNEALKKRVEPIAQELGSDYVYELDVSKPEHFKSL 73 (274)
T ss_pred cEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEE-e-cCHHHHHHHHHHHHhcCCceEEEecCCCHHHHHHH
Confidence 789999997 57999999988875 6777643 3 442 34555555554443333555555555543
No 432
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=70.02 E-value=5.9 Score=36.66 Aligned_cols=31 Identities=42% Similarity=0.758 Sum_probs=25.4
Q ss_pred CeeEEEEccCChHhHHHHH--HHHhCCCceEEEE
Q 012004 76 PKPISVLGSTGSIGTQTLD--IVAEHEDKFRVVA 107 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLd--Vi~~~pd~f~Vva 107 (473)
+|-|+|+|.+|| |+.||- +++++|++|..+.
T Consensus 2 ~r~ivl~Gpsg~-GK~~l~~~L~~~~~~~~~~~v 34 (183)
T PF00625_consen 2 RRPIVLVGPSGS-GKSTLAKRLIQEFPDKFGRVV 34 (183)
T ss_dssp SSEEEEESSTTS-SHHHHHHHHHHHSTTTEEEEE
T ss_pred CCEEEEECCCCC-CHHHHHHHHHHhcccccccce
Confidence 467999999999 999884 6788999995433
No 433
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=69.71 E-value=33 Score=31.62 Aligned_cols=53 Identities=26% Similarity=0.329 Sum_probs=44.9
Q ss_pred EEEccCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 80 ~ILGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
+|+|..| .||.+.+..+-+. ..|+|+=|-...-.+.+.+.+++.+|+.|+++.
T Consensus 4 vvigtv~~D~HdiGk~iv~~~l~~-~GfeVi~LG~~v~~e~~v~aa~~~~adiVglS~ 60 (134)
T TIGR01501 4 IVLGVIGSDCHAVGNKILDHAFTN-AGFNVVNLGVLSPQEEFIKAAIETKADAILVSS 60 (134)
T ss_pred EEEEEecCChhhHhHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 4556555 5999988887664 689999999999999999999999999999865
No 434
>PF02602 HEM4: Uroporphyrinogen-III synthase HemD; InterPro: IPR003754 Tetrapyrroles are large macrocyclic compounds derived from a common biosynthetic pathway []. The end-product, uroporphyrinogen III, is used to synthesise a number of important molecules, including vitamin B12, haem, sirohaem, chlorophyll, coenzyme F430 and phytochromobilin []. The first stage in tetrapyrrole synthesis is the synthesis of 5-aminoaevulinic acid ALA via two possible routes: (1) condensation of succinyl CoA and glycine (C4 pathway) using ALA synthase (2.3.1.37 from EC), or (2) decarboxylation of glutamate (C5 pathway) via three different enzymes, glutamyl-tRNA synthetase (6.1.1.17 from EC) to charge a tRNA with glutamate, glutamyl-tRNA reductase (1.2.1.70 from EC) to reduce glutamyl-tRNA to glutamate-1-semialdehyde (GSA), and GSA aminotransferase (5.4.3.8 from EC) to catalyse a transamination reaction to produce ALA. The second stage is to convert ALA to uroporphyrinogen III, the first macrocyclic tetrapyrrolic structure in the pathway. This is achieved by the action of three enzymes in one common pathway: porphobilinogen (PBG) synthase (or ALA dehydratase, 4.2.1.24 from EC) to condense two ALA molecules to generate porphobilinogen; hydroxymethylbilane synthase (or PBG deaminase, 2.5.1.61 from EC) to polymerise four PBG molecules into preuroporphyrinogen (tetrapyrrole structure); and uroporphyrinogen III synthase (4.2.1.75 from EC) to link two pyrrole units together (rings A and D) to yield uroporphyrinogen III. Uroporphyrinogen III is the first branch point of the pathway. To synthesise cobalamin (vitamin B12), sirohaem, and coenzyme F430, uroporphyrinogen III needs to be converted into precorrin-2 by the action of uroporphyrinogen III methyltransferase (2.1.1.107 from EC). To synthesise haem and chlorophyll, uroporphyrinogen III needs to be decarboxylated into coproporphyrinogen III by the action of uroporphyrinogen III decarboxylase (4.1.1.37 from EC) []. This entry represents uroporphyrinogen III synthase (4.2.1.75 from EC) which functions during the second stage of tetrapyrrole biosynthesis. This enzyme catalyses the inversion of the final pyrrole unit (ring D) of the linear tetrapyrrole molecule, linking it to the first pyrrole unit (ring A), thereby generating a large macrocyclic structure called uroporphyrinogen III []. The enzyme folds into two alpha/beta domains connected by a beta-ladder, the active site being located between the two domains []. Congenital erythropoietic porphyria (CEP) is an autosomal recessive inborn error of metabolism that results from the markedly deficient activity of uroporphyrinogen III synthase []. ; GO: 0004852 uroporphyrinogen-III synthase activity, 0033014 tetrapyrrole biosynthetic process; PDB: 1WD7_B 1WCX_A 1WCW_A 3D8R_A 3D8T_B 3D8S_A 3D8N_A 3RE1_A 3MW8_A 3P9Z_A ....
Probab=69.70 E-value=20 Score=33.79 Aligned_cols=128 Identities=17% Similarity=0.210 Sum_probs=82.0
Q ss_pred hHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHh-hCCC-EEEEeCcccHHHHHHHHhcCCCCc---EEEec----
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKR-FKPQ-VVAVRNESLLDEIKEALANVEEKP---EILAG---- 156 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~~-f~P~-~v~v~de~~~~~l~~~l~~~~~~~---~v~~G---- 156 (473)
.||.+|-+.++++ .|+..-+.. ..+.+.|.+...+ ..++ .+.+..+.....|.+.|...+..+ .++.-
T Consensus 78 avG~~Ta~~l~~~--G~~~~~~~~~~~~s~~L~~~l~~~~~~~~vl~~~g~~~~~~l~~~L~~~g~~v~~~~vY~~~~~~ 155 (231)
T PF02602_consen 78 AVGPKTAEALREY--GFQPDFVPSSEGSSEGLAELLKEQLRGKRVLILRGEGGRPDLPEKLREAGIEVTEVIVYETPPEE 155 (231)
T ss_dssp ESSHHHHHHHHHT--T-EECEE-TTSSSHHHHHGGHHHCCTTEEEEEEESSSSCHHHHHHHHHTTEEEEEEECEEEEEHH
T ss_pred EEcHHHHHHHHHc--CCCccccCCCCCCHHHHHHHHHhhCCCCeEEEEcCCCccHHHHHHHHHCCCeEEEEEEeeccccc
Confidence 6799999999998 788866655 6678888876664 5554 555676667778888886555222 12222
Q ss_pred -hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCCe
Q 012004 157 -EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNIK 220 (473)
Q Consensus 157 -~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~~ 220 (473)
.+.+.+.....+.|+|+..-.-. ..-.+..++... .+-+.=.+||-|+-..+.+++.|.+
T Consensus 156 ~~~~~~~~l~~~~~~~v~ftS~~~--~~~~~~~~~~~~--~~~~~~~~~~ig~~ta~~l~~~g~~ 216 (231)
T PF02602_consen 156 LSPELKEALDRGEIDAVVFTSPSA--VRAFLELLKKNG--ALLKRVPIVAIGPRTAKALRELGFK 216 (231)
T ss_dssp HHHHHHHHHHHTTTSEEEESSHHH--HHHHHHHSSGHH--HHHTTSEEEESSHHHHHHHHHTT-S
T ss_pred chHHHHHHHHcCCCCEEEECCHHH--HHHHHHHhHhhh--hhhhCCEEEEECHHHHHHHHHcCCC
Confidence 23455555556789988765432 333333333222 4455567899999999999999865
No 435
>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=69.68 E-value=45 Score=35.11 Aligned_cols=109 Identities=13% Similarity=0.210 Sum_probs=68.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHH------hhCCCEEEEeCcccHHHHHHHHhcCC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVK------RFKPQVVAVRNESLLDEIKEALANVE 148 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~------~f~P~~v~v~de~~~~~l~~~l~~~~ 148 (473)
+.||+|-|. |=||+..++.+.++ ++++|++.-. ....+.++-+.+ +|+... ...+.. +.-.+
T Consensus 2 ~ikigInG~-GRiGr~v~r~~~~~-~~~~ivaind~~~~~~~~a~ll~yDs~~g~~~~~v-~~~g~~--------l~~~g 70 (334)
T PRK08955 2 TIKVGINGF-GRIGRLALRAAWDW-PELEFVQINDPAGDAATLAHLLEFDSVHGRWHHEV-TAEGDA--------IVING 70 (334)
T ss_pred CeEEEEECc-CHHHHHHHHHHHhC-CCcEEEEecCCCCCHHHHHHHhhhhccCCCCCCCE-EEcCCE--------EEECC
Confidence 368999999 99999999998876 5699998765 446777766655 243222 211111 11011
Q ss_pred CCcEEEechhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC-Ccccc
Q 012004 149 EKPEILAGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG-KDIAL 197 (473)
Q Consensus 149 ~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G-K~IaL 197 (473)
..+++.. +..+.++-= .++|+|+.+.-++.--.-.-.++++| |+|-+
T Consensus 71 ~~i~v~~-~~~~~~~~w-~gvDiVle~tG~~~s~~~a~~hl~aGak~V~i 118 (334)
T PRK08955 71 KRIRTTQ-NKAIADTDW-SGCDVVIEASGVMKTKALLQAYLDQGVKRVVV 118 (334)
T ss_pred EEEEEEe-cCChhhCCc-cCCCEEEEccchhhcHHHHHHHHHCCCEEEEE
Confidence 2233432 223444332 28999999877777666677888999 45543
No 436
>COG0289 DapB Dihydrodipicolinate reductase [Amino acid transport and metabolism]
Probab=69.61 E-value=14 Score=37.91 Aligned_cols=40 Identities=20% Similarity=0.268 Sum_probs=32.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHH
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITL 116 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~ 116 (473)
+.||+|.|++|=.|++.++.+.+.| .+++++--.+..-..
T Consensus 2 ~iki~V~Ga~GRMG~~ii~~v~~~~-~~~L~aa~~~~~~~~ 41 (266)
T COG0289 2 MIKVAVAGASGRMGRTLIRAVLEAP-DLELVAAFDRPGSLS 41 (266)
T ss_pred CceEEEEcCCChHHHHHHHHHhcCC-CceEEEEEecCCccc
Confidence 4579999999999999999999987 588887766554433
No 437
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=69.43 E-value=39 Score=32.97 Aligned_cols=92 Identities=14% Similarity=0.145 Sum_probs=54.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.| +|.+|..++.+.++. .++|++++. +-+.+ +.++++..+.+.-..+....
T Consensus 167 ~~vli~g-~g~vG~~~~~la~~~--G~~V~~~~~--s~~~~-~~~~~~g~~~~~~~~~~~~~------------------ 222 (338)
T cd08254 167 ETVLVIG-LGGLGLNAVQIAKAM--GAAVIAVDI--KEEKL-ELAKELGADEVLNSLDDSPK------------------ 222 (338)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCEEEEEcC--CHHHH-HHHHHhCCCEEEcCCCcCHH------------------
Confidence 4788876 689999999999987 566776643 33333 34466766554432222111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+ +......+|+|++.+-+-..+...+..++.|-+
T Consensus 223 -~~~-~~~~~~~~D~vid~~g~~~~~~~~~~~l~~~G~ 258 (338)
T cd08254 223 -DKK-AAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGR 258 (338)
T ss_pred -HHH-HHhcCCCceEEEECCCCHHHHHHHHHHhhcCCE
Confidence 111 112233589999876554556666777766544
No 438
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=69.29 E-value=27 Score=36.70 Aligned_cols=45 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
+++|+|+|+ |-+|.++...++.+. .+|+.. .++.+.+.+...+|.
T Consensus 167 ~~~VlViGa-G~vG~~aa~~a~~lG--a~V~v~--d~~~~~~~~l~~~~g 211 (370)
T TIGR00518 167 PGDVTIIGG-GVVGTNAAKMANGLG--ATVTIL--DINIDRLRQLDAEFG 211 (370)
T ss_pred CceEEEEcC-CHHHHHHHHHHHHCC--CeEEEE--ECCHHHHHHHHHhcC
Confidence 467999998 999999999999873 455553 456677666556664
No 439
>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1. Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.
Probab=69.16 E-value=39 Score=33.45 Aligned_cols=90 Identities=18% Similarity=0.234 Sum_probs=55.7
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..+|.|.|++|.+|..++.+.+.. ..+|++.+..+ . .+.++++..+.+.-... . .+.+.+
T Consensus 163 g~~vlI~g~~g~ig~~~~~~a~~~--G~~v~~~~~~~---~-~~~~~~~g~~~~~~~~~--~-~~~~~l----------- 222 (350)
T cd08248 163 GKRVLILGGSGGVGTFAIQLLKAW--GAHVTTTCSTD---A-IPLVKSLGADDVIDYNN--E-DFEEEL----------- 222 (350)
T ss_pred CCEEEEECCCChHHHHHHHHHHHC--CCeEEEEeCcc---h-HHHHHHhCCceEEECCC--h-hHHHHH-----------
Confidence 468999999999999999999887 45788766332 2 23456666544332111 1 111111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
.....+|+|++.+.|- .+...+..+..+=+
T Consensus 223 --------~~~~~vd~vi~~~g~~-~~~~~~~~l~~~G~ 252 (350)
T cd08248 223 --------TERGKFDVILDTVGGD-TEKWALKLLKKGGT 252 (350)
T ss_pred --------HhcCCCCEEEECCChH-HHHHHHHHhccCCE
Confidence 1113589999886664 56666777665443
No 440
>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family. This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone
Probab=69.15 E-value=78 Score=30.53 Aligned_cols=92 Identities=18% Similarity=0.235 Sum_probs=52.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|.|++|.||..+..+.+.+ .++|+..+ ++-+.+ +.++++..+.+. +.......+
T Consensus 168 ~~vlI~g~~~~iG~~~~~~~~~~--g~~v~~~~--~~~~~~-~~~~~~~~~~~~--~~~~~~~~~--------------- 225 (342)
T cd08266 168 ETVLVHGAGSGVGSAAIQIAKLF--GATVIATA--GSEDKL-ERAKELGADYVI--DYRKEDFVR--------------- 225 (342)
T ss_pred CEEEEECCCchHHHHHHHHHHHc--CCEEEEEe--CCHHHH-HHHHHcCCCeEE--ecCChHHHH---------------
Confidence 58999999999999999999987 46666543 333333 334555554332 111111111
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
.+.+......+|++++.+.+ ..+...+..++.+-
T Consensus 226 --~~~~~~~~~~~d~~i~~~g~-~~~~~~~~~l~~~G 259 (342)
T cd08266 226 --EVRELTGKRGVDVVVEHVGA-ATWEKSLKSLARGG 259 (342)
T ss_pred --HHHHHhCCCCCcEEEECCcH-HHHHHHHHHhhcCC
Confidence 11222222358999987543 45555555555443
No 441
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=69.14 E-value=37 Score=30.95 Aligned_cols=53 Identities=23% Similarity=0.355 Sum_probs=44.9
Q ss_pred EEEccCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 80 ~ILGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
+|+|+.| .+|...+...-+. ..|+|+-|-...-.+.+.+.+.+.+|++|+++.
T Consensus 6 vl~~~~~gD~H~lG~~iv~~~lr~-~G~eVi~LG~~vp~e~i~~~a~~~~~d~V~lS~ 62 (137)
T PRK02261 6 VVLGVIGADCHAVGNKILDRALTE-AGFEVINLGVMTSQEEFIDAAIETDADAILVSS 62 (137)
T ss_pred EEEEeCCCChhHHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEcC
Confidence 4666655 4888888887664 689999999999999999999999999999964
No 442
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=68.97 E-value=15 Score=36.27 Aligned_cols=47 Identities=19% Similarity=0.358 Sum_probs=37.3
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC---------CHHHHHHHHHhh
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS---------NITLLADQVKRF 124 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~---------Nv~~L~~q~~~f 124 (473)
..++|+|.| .|.||..+.+.+.++ ..+|++++-.+ |++.|.+..+++
T Consensus 30 ~~~~v~I~G-~G~VG~~~a~~L~~~--g~~vv~v~D~~g~~~~~~Gld~~~l~~~~~~~ 85 (227)
T cd01076 30 AGARVAIQG-FGNVGSHAARFLHEA--GAKVVAVSDSDGTIYNPDGLDVPALLAYKKEH 85 (227)
T ss_pred cCCEEEEEC-CCHHHHHHHHHHHHC--CCEEEEEECCCCeEECCCCCCHHHHHHHHHhc
Confidence 347999999 699999999999887 89999997533 677776665554
No 443
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=68.95 E-value=53 Score=32.12 Aligned_cols=30 Identities=20% Similarity=0.131 Sum_probs=24.0
Q ss_pred CeeEEEEccCC--hHhHHHHHHHHhCCCceEEEE
Q 012004 76 PKPISVLGSTG--SIGTQTLDIVAEHEDKFRVVA 107 (473)
Q Consensus 76 ~k~I~ILGSTG--SIG~qtLdVi~~~pd~f~Vva 107 (473)
.|.+.|.|+++ -||..+..-+.+. .++|+.
T Consensus 6 ~k~~lITGas~~~GIG~aia~~la~~--G~~vil 37 (262)
T PRK07984 6 GKRILVTGVASKLSIAYGIAQAMHRE--GAELAF 37 (262)
T ss_pred CCEEEEeCCCCCccHHHHHHHHHHHC--CCEEEE
Confidence 37899999986 7999988888775 567764
No 444
>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty
Probab=68.52 E-value=32 Score=34.15 Aligned_cols=94 Identities=17% Similarity=0.216 Sum_probs=55.9
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|+| .|++|..++.+.+.. .++|++++... +.. +.++++..+.+.-..+ ...+.+.
T Consensus 166 ~~~vlV~g-~g~vg~~~~~~a~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~i~~~~--~~~~~~~------------ 225 (345)
T cd08260 166 GEWVAVHG-CGGVGLSAVMIASAL--GARVIAVDIDD--DKL-ELARELGAVATVNASE--VEDVAAA------------ 225 (345)
T ss_pred CCEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEeCCH--HHH-HHHHHhCCCEEEcccc--chhHHHH------------
Confidence 36899999 799999999999987 67887775433 222 3335566544432221 0011111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+..+... .+|++++.+.+-..+...+..++.+-+
T Consensus 226 ----~~~~~~~-~~d~vi~~~g~~~~~~~~~~~l~~~g~ 259 (345)
T cd08260 226 ----VRDLTGG-GAHVSVDALGIPETCRNSVASLRKRGR 259 (345)
T ss_pred ----HHHHhCC-CCCEEEEcCCCHHHHHHHHHHhhcCCE
Confidence 1222233 589999886554556666677765543
No 445
>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases. Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal
Probab=68.29 E-value=39 Score=32.93 Aligned_cols=50 Identities=20% Similarity=0.391 Sum_probs=37.5
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVA 130 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~ 130 (473)
.++|.|.|++|++|..+..+.+.. .++|++.+... ++. +.++++..+.+.
T Consensus 147 ~~~vlI~ga~g~vg~~~~~~A~~~--G~~vi~~~~~~--~~~-~~~~~~g~~~~~ 196 (324)
T cd08288 147 DGPVLVTGAAGGVGSVAVALLARL--GYEVVASTGRP--EEA-DYLRSLGASEII 196 (324)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHC--CCeEEEEeCCH--HHH-HHHHhcCCCEEE
Confidence 368999999999999999999987 57888876533 333 344677765544
No 446
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=68.23 E-value=16 Score=35.03 Aligned_cols=49 Identities=14% Similarity=0.287 Sum_probs=32.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHHhhC
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
.+||+|+| +|.+|+.-..-+.++. ..++.+.+..++|-+.+.+..+++.
T Consensus 4 ~~kI~iIG-~G~mg~ala~~l~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 53 (245)
T PRK07634 4 KHRILFIG-AGRMAEAIFSGLLKTSKEYIEEIIVSNRSNVEKLDQLQARYN 53 (245)
T ss_pred CCeEEEEC-cCHHHHHHHHHHHhCCCCCcCeEEEECCCCHHHHHHHHHHcC
Confidence 35899999 6999998888776653 3444233344556677766666554
No 447
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.00 E-value=28 Score=38.01 Aligned_cols=87 Identities=23% Similarity=0.268 Sum_probs=46.4
Q ss_pred CCeeEEEEccCChHhHHHHHH-HHh--CCCceEEEEEeccC----CHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcC
Q 012004 75 GPKPISVLGSTGSIGTQTLDI-VAE--HEDKFRVVALAAGS----NITLLADQVKRFKPQVVAVRNESLLDEIKEALANV 147 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdV-i~~--~pd~f~VvaLaa~~----Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~ 147 (473)
.++.|+|+|-||+ |++|+-. +.. ...+++|.-+++-. -++.|...+...+..++...++. .+.+
T Consensus 240 ~~~vI~LVGptGv-GKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~---~L~~----- 310 (436)
T PRK11889 240 EVQTIALIGPTGV-GKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEA---AMTR----- 310 (436)
T ss_pred CCcEEEEECCCCC-cHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHH---HHHH-----
Confidence 3578999999998 7777543 221 12345565555532 24455555555555554443322 2222
Q ss_pred CCCcEEEechhhHHHhhcCCCCCEEEEecccccC
Q 012004 148 EEKPEILAGEQGVIEAARHPDAVTVVTGIVGCAG 181 (473)
Q Consensus 148 ~~~~~v~~G~egl~~la~~~~~D~Vv~AIvG~aG 181 (473)
++..+....+.|+|+.=-.|-.-
T Consensus 311 -----------aL~~lk~~~~~DvVLIDTaGRs~ 333 (436)
T PRK11889 311 -----------ALTYFKEEARVDYILIDTAGKNY 333 (436)
T ss_pred -----------HHHHHHhccCCCEEEEeCccccC
Confidence 22233333358988876666543
No 448
>PLN02827 Alcohol dehydrogenase-like
Probab=67.91 E-value=33 Score=35.40 Aligned_cols=93 Identities=13% Similarity=0.162 Sum_probs=54.2
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
.++|.|.|+ |.||..++.+.+.. ..+ |++... +-++ .+.++++..+.+.-..+ ....+.+.
T Consensus 194 g~~VlV~G~-G~vG~~~iqlak~~--G~~~vi~~~~--~~~~-~~~a~~lGa~~~i~~~~-~~~~~~~~----------- 255 (378)
T PLN02827 194 GSSVVIFGL-GTVGLSVAQGAKLR--GASQIIGVDI--NPEK-AEKAKTFGVTDFINPND-LSEPIQQV----------- 255 (378)
T ss_pred CCEEEEECC-CHHHHHHHHHHHHc--CCCeEEEECC--CHHH-HHHHHHcCCcEEEcccc-cchHHHHH-----------
Confidence 368999995 99999999999876 454 554332 2233 35667787765532211 00111111
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.++... .+|+|++++.+...+.-.+..++.|
T Consensus 256 -----v~~~~~~-g~d~vid~~G~~~~~~~~l~~l~~g 287 (378)
T PLN02827 256 -----IKRMTGG-GADYSFECVGDTGIATTALQSCSDG 287 (378)
T ss_pred -----HHHHhCC-CCCEEEECCCChHHHHHHHHhhccC
Confidence 1222222 5899999765544566666666665
No 449
>PRK13771 putative alcohol dehydrogenase; Provisional
Probab=67.75 E-value=33 Score=33.73 Aligned_cols=88 Identities=17% Similarity=0.292 Sum_probs=54.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..+|.|.|++|++|..++.+.++. .++|++++. +-+.+. .+++| .+.+. +.. .+.+.
T Consensus 163 ~~~vlI~g~~g~~g~~~~~la~~~--g~~vi~~~~--~~~~~~-~~~~~-~~~~~--~~~---~~~~~------------ 219 (334)
T PRK13771 163 GETVLVTGAGGGVGIHAIQVAKAL--GAKVIAVTS--SESKAK-IVSKY-ADYVI--VGS---KFSEE------------ 219 (334)
T ss_pred CCEEEEECCCccHHHHHHHHHHHc--CCEEEEEeC--CHHHHH-HHHHH-HHHhc--Cch---hHHHH------------
Confidence 358999999999999999999987 577776654 333332 23444 22111 111 11111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.++ ..+|++++...| ..+...+.+++.|-+
T Consensus 220 ----v~~~---~~~d~~ld~~g~-~~~~~~~~~l~~~G~ 250 (334)
T PRK13771 220 ----VKKI---GGADIVIETVGT-PTLEESLRSLNMGGK 250 (334)
T ss_pred ----HHhc---CCCcEEEEcCCh-HHHHHHHHHHhcCCE
Confidence 1111 258999998666 557778888876654
No 450
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=67.59 E-value=46 Score=32.60 Aligned_cols=63 Identities=10% Similarity=0.029 Sum_probs=38.0
Q ss_pred eeEEEEccCC--hHhHHHHHHHHhCCCceEEEEEeccCCH---HHHHHHHHhhCCCEEEEeCcccHHHHHHH
Q 012004 77 KPISVLGSTG--SIGTQTLDIVAEHEDKFRVVALAAGSNI---TLLADQVKRFKPQVVAVRNESLLDEIKEA 143 (473)
Q Consensus 77 k~I~ILGSTG--SIG~qtLdVi~~~pd~f~VvaLaa~~Nv---~~L~~q~~~f~P~~v~v~de~~~~~l~~~ 143 (473)
|.+.|.|+|+ -||..+-.-+.+. .++|+.. + +|- +.+.+.+++.......-.|-.+.+.+++.
T Consensus 8 k~~lVTGas~~~GIG~aiA~~la~~--Ga~V~~~-~-r~~~~~~~~~~~~~~~g~~~~~~~Dv~d~~~v~~~ 75 (271)
T PRK06505 8 KRGLIMGVANDHSIAWGIAKQLAAQ--GAELAFT-Y-QGEALGKRVKPLAESLGSDFVLPCDVEDIASVDAV 75 (271)
T ss_pred CEEEEeCCCCCCcHHHHHHHHHHhC--CCEEEEe-c-CchHHHHHHHHHHHhcCCceEEeCCCCCHHHHHHH
Confidence 7899999997 7999999988875 6777653 3 332 23333334443333333455554445443
No 451
>KOG1371 consensus UDP-glucose 4-epimerase/UDP-sulfoquinovose synthase [Cell wall/membrane/envelope biogenesis]
Probab=67.39 E-value=31 Score=36.66 Aligned_cols=69 Identities=19% Similarity=0.261 Sum_probs=45.0
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEe--ccCCHHHHHHHHHhhC-CCEEEE--eCcccHHHHHHHHh
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA--AGSNITLLADQVKRFK-PQVVAV--RNESLLDEIKEALA 145 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa--a~~Nv~~L~~q~~~f~-P~~v~v--~de~~~~~l~~~l~ 145 (473)
++++|.+.|+.|+||+.|.=-+.+. .|+|+.+= .+++.+-|....+.+. ++.|.+ .|-.+.+.|++.++
T Consensus 1 ~~~~VLVtGgaGyiGsht~l~L~~~--gy~v~~vDNl~n~~~~sl~r~~~l~~~~~~v~f~~~Dl~D~~~L~kvF~ 74 (343)
T KOG1371|consen 1 GGKHVLVTGGAGYIGSHTVLALLKR--GYGVVIVDNLNNSYLESLKRVRQLLGEGKSVFFVEGDLNDAEALEKLFS 74 (343)
T ss_pred CCcEEEEecCCcceehHHHHHHHhC--CCcEEEEecccccchhHHHHHHHhcCCCCceEEEEeccCCHHHHHHHHh
Confidence 3578999999999999986555554 88999884 4666666655544443 244443 44455555555544
No 452
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=67.26 E-value=44 Score=33.81 Aligned_cols=93 Identities=12% Similarity=0.185 Sum_probs=55.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.| +|.+|..++.+++.. .++ |++++.. -+. .+.++++..+.+.-.++.. +.
T Consensus 189 ~~VlI~g-~g~vG~~~~~lak~~--G~~~vi~~~~s--~~~-~~~~~~~g~~~v~~~~~~~---~~-------------- 245 (367)
T cd08263 189 ETVAVIG-VGGVGSSAIQLAKAF--GASPIIAVDVR--DEK-LAKAKELGATHTVNAAKED---AV-------------- 245 (367)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEeCC--HHH-HHHHHHhCCceEecCCccc---HH--------------
Confidence 5788886 799999999999887 355 5554432 222 2445666655443222111 11
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKD 194 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~ 194 (473)
+.+.+......+|+|++.+.|...+...+..++.+-+
T Consensus 246 --~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~ 282 (367)
T cd08263 246 --AAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGR 282 (367)
T ss_pred --HHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCE
Confidence 1122222234589999998776567777777766544
No 453
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=67.26 E-value=21 Score=35.63 Aligned_cols=82 Identities=12% Similarity=0.137 Sum_probs=46.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
+++.|+| +|.||..++.+.+.+ ..+++..+ ..+-+.|. .++.+. ++ |..
T Consensus 146 ~~vlV~G-~G~vG~~a~q~ak~~--G~~~v~~~-~~~~~rl~-~a~~~~----~i-~~~--------------------- 194 (308)
T TIGR01202 146 LPDLIVG-HGTLGRLLARLTKAA--GGSPPAVW-ETNPRRRD-GATGYE----VL-DPE--------------------- 194 (308)
T ss_pred CcEEEEC-CCHHHHHHHHHHHHc--CCceEEEe-CCCHHHHH-hhhhcc----cc-Chh---------------------
Confidence 4688887 588998888888876 45544433 33434432 233221 11 100
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
++ ....+|+|+++.-+-..+.-.+..++.|-++
T Consensus 195 ~~------~~~g~Dvvid~~G~~~~~~~~~~~l~~~G~i 227 (308)
T TIGR01202 195 KD------PRRDYRAIYDASGDPSLIDTLVRRLAKGGEI 227 (308)
T ss_pred hc------cCCCCCEEEECCCCHHHHHHHHHhhhcCcEE
Confidence 00 1135899999866555566666766666554
No 454
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=67.17 E-value=10 Score=40.62 Aligned_cols=55 Identities=20% Similarity=0.363 Sum_probs=41.6
Q ss_pred ccCCCCCCeeEEEEccCChHhHHHHHHHHhCCCceE-----EEEEe-ccCCHHHHHHHHHhh
Q 012004 69 FRKTWDGPKPISVLGSTGSIGTQTLDIVAEHEDKFR-----VVALA-AGSNITLLADQVKRF 124 (473)
Q Consensus 69 ~~~~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~-----VvaLa-a~~Nv~~L~~q~~~f 124 (473)
-.++|..|-||+|.|+||.||.+.+--+.. .+-|. +..|. ...|.+++..++.++
T Consensus 37 ~~~~~~~p~KV~IIGAaG~VG~~~A~~l~~-~~l~~~~~ei~L~L~diD~~~~~a~g~a~DL 97 (387)
T TIGR01757 37 LTKSWKKTVNVAVSGAAGMISNHLLFMLAS-GEVFGQDQPIALKLLGSERSKEALEGVAMEL 97 (387)
T ss_pred HHhcCCCCeEEEEECCCcHHHHHHHHHHHh-ccccCCCCceEEEEeccCccchhhhHHHHHH
Confidence 458999999999999999999999886654 23444 33344 567888888887765
No 455
>TIGR01019 sucCoAalpha succinyl-CoA synthetase, alpha subunit. ATP citrate lyases appear to form an outgroup.
Probab=66.99 E-value=38 Score=34.81 Aligned_cols=28 Identities=21% Similarity=0.215 Sum_probs=23.4
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDK 102 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~ 102 (473)
..-||+|-|-||.+|..-++.++.++-+
T Consensus 5 ~~~~~~~~g~~~~~~~~~~~~~~~~g~~ 32 (286)
T TIGR01019 5 KDTKVIVQGITGSQGSFHTEQMLAYGTN 32 (286)
T ss_pred CCCcEEEecCCcHHHHHHHHHHHhCCCC
Confidence 3458999999999999999999986433
No 456
>PRK05086 malate dehydrogenase; Provisional
Probab=66.98 E-value=7.9 Score=39.73 Aligned_cols=33 Identities=18% Similarity=0.264 Sum_probs=25.3
Q ss_pred eeEEEEccCChHhHHHHHHHHh-CCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAE-HEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~-~pd~f~VvaLa 109 (473)
+||+|+|+||.||.+..-.+.. .+...+++.+.
T Consensus 1 ~KI~IIGAsG~VG~aia~~l~~~~~~~~el~L~d 34 (312)
T PRK05086 1 MKVAVLGAAGGIGQALALLLKTQLPAGSELSLYD 34 (312)
T ss_pred CEEEEECCCCHHHHHHHHHHHcCCCCccEEEEEe
Confidence 5899999999999999877754 55555566554
No 457
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=66.71 E-value=36 Score=32.49 Aligned_cols=92 Identities=24% Similarity=0.345 Sum_probs=61.2
Q ss_pred EEEccCC----hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC--cccHH---HHHHHHhcCCC-
Q 012004 80 SVLGSTG----SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN--ESLLD---EIKEALANVEE- 149 (473)
Q Consensus 80 ~ILGSTG----SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d--e~~~~---~l~~~l~~~~~- 149 (473)
+|+|+.+ .||..-+..+-+. ..|+|+-|-..--.+.+.+.+++.+|++|+++- ..... ++-+.+...+.
T Consensus 85 vl~~~~~gd~H~lG~~~v~~~l~~-~G~~vi~lG~~~p~~~l~~~~~~~~~d~v~lS~~~~~~~~~~~~~i~~lr~~~~~ 163 (201)
T cd02070 85 VVIGTVEGDIHDIGKNLVATMLEA-NGFEVIDLGRDVPPEEFVEAVKEHKPDILGLSALMTTTMGGMKEVIEALKEAGLR 163 (201)
T ss_pred EEEEecCCccchHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEeccccccHHHHHHHHHHHHHCCCC
Confidence 4666655 6999888777553 589999888888899999999999999999864 22222 33333433333
Q ss_pred -CcEEEechhhHH-HhhcCCCCCEE
Q 012004 150 -KPEILAGEQGVI-EAARHPDAVTV 172 (473)
Q Consensus 150 -~~~v~~G~egl~-~la~~~~~D~V 172 (473)
++.|+.|-..+. +.++.-.+|..
T Consensus 164 ~~~~i~vGG~~~~~~~~~~~GaD~~ 188 (201)
T cd02070 164 DKVKVMVGGAPVNQEFADEIGADGY 188 (201)
T ss_pred cCCeEEEECCcCCHHHHHHcCCcEE
Confidence 566666655543 34444455543
No 458
>PRK06523 short chain dehydrogenase; Provisional
Probab=66.60 E-value=7.9 Score=36.77 Aligned_cols=31 Identities=39% Similarity=0.389 Sum_probs=27.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
|+|.|.|+||.||.++.+-+.+. .++|+++.
T Consensus 10 k~vlItGas~gIG~~ia~~l~~~--G~~v~~~~ 40 (260)
T PRK06523 10 KRALVTGGTKGIGAATVARLLEA--GARVVTTA 40 (260)
T ss_pred CEEEEECCCCchhHHHHHHHHHC--CCEEEEEe
Confidence 68999999999999999988875 67888765
No 459
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=65.77 E-value=3.7 Score=38.96 Aligned_cols=30 Identities=30% Similarity=0.414 Sum_probs=20.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
+||.|+|++|| |++|+.---. ++|.+.=|+
T Consensus 1 ~riiilG~pGa-GK~T~A~~La--~~~~i~hls 30 (178)
T COG0563 1 MRILILGPPGA-GKSTLAKKLA--KKLGLPHLD 30 (178)
T ss_pred CeEEEECCCCC-CHHHHHHHHH--HHhCCcEEc
Confidence 48999999999 8888743211 136566555
No 460
>PRK09009 C factor cell-cell signaling protein; Provisional
Probab=65.55 E-value=9.2 Score=35.74 Aligned_cols=32 Identities=25% Similarity=0.337 Sum_probs=24.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVAL 108 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaL 108 (473)
|+++|.|+||.||.+...-+.+......|+.+
T Consensus 1 ~~vlItGas~gIG~~ia~~l~~~~~~~~v~~~ 32 (235)
T PRK09009 1 MNILIVGGSGGIGKAMVKQLLERYPDATVHAT 32 (235)
T ss_pred CEEEEECCCChHHHHHHHHHHHhCCCCEEEEE
Confidence 47999999999999999888765334555543
No 461
>PRK12320 hypothetical protein; Provisional
Probab=65.52 E-value=7.6 Score=44.55 Aligned_cols=30 Identities=23% Similarity=0.316 Sum_probs=26.2
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
||.|.|+||+||....+-+.+. .++|+++.
T Consensus 2 kILVTGAaGFIGs~La~~Ll~~--G~~Vi~ld 31 (699)
T PRK12320 2 QILVTDATGAVGRSVTRQLIAA--GHTVSGIA 31 (699)
T ss_pred EEEEECCCCHHHHHHHHHHHhC--CCEEEEEe
Confidence 7999999999999999977664 58898887
No 462
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed
Probab=65.34 E-value=26 Score=35.82 Aligned_cols=132 Identities=16% Similarity=0.164 Sum_probs=72.5
Q ss_pred CCCCCeeEEEEccCChHhHHHHHHHHhCCC---ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCc----cc-HHHHHHH
Q 012004 72 TWDGPKPISVLGSTGSIGTQTLDIVAEHED---KFRVVALAAGSNITLLADQVKRFKPQVVAVRNE----SL-LDEIKEA 143 (473)
Q Consensus 72 ~~~~~k~I~ILGSTGSIG~qtLdVi~~~pd---~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de----~~-~~~l~~~ 143 (473)
+...++||+||+|.+ |++--.++.+... .++|+++.+++ +.+...|++++-.+..+... .. ..++.+.
T Consensus 85 ~~~~~~ri~vl~Sg~--gsnl~al~~~~~~~~~~~~i~~visn~--~~~~~lA~~~gIp~~~~~~~~~~~~~~~~~~~~~ 160 (286)
T PRK06027 85 DSAERKRVVILVSKE--DHCLGDLLWRWRSGELPVEIAAVISNH--DDLRSLVERFGIPFHHVPVTKETKAEAEARLLEL 160 (286)
T ss_pred ccccCcEEEEEEcCC--CCCHHHHHHHHHcCCCCcEEEEEEEcC--hhHHHHHHHhCCCEEEeccCccccchhHHHHHHH
Confidence 334568999999988 8888888855433 68999987655 23344588888777765321 11 1123333
Q ss_pred HhcCCCCcEEEechhhHH--HhhcCCCCCEEEE----ecccccCcHHHHHHHHcCCc-----ccccccceeeeccccc
Q 012004 144 LANVEEKPEILAGEQGVI--EAARHPDAVTVVT----GIVGCAGLKPTVAAIEAGKD-----IALANKETLIAGGPFV 210 (473)
Q Consensus 144 l~~~~~~~~v~~G~egl~--~la~~~~~D~Vv~----AIvG~aGL~ptl~Ai~~GK~-----IaLANKESLV~aG~li 210 (473)
+...+.+.-|+.|---+. ++.+..+ .-++| -+--+-|..|...|+.+|.+ |=..+.| +-.|+++
T Consensus 161 l~~~~~Dlivlagy~~il~~~~l~~~~-~~iiNiHpSLLP~yrG~~~~~~ai~~G~~~tG~TiH~v~~~--~D~G~Ii 235 (286)
T PRK06027 161 IDEYQPDLVVLARYMQILSPDFVARFP-GRIINIHHSFLPAFKGAKPYHQAYERGVKLIGATAHYVTAD--LDEGPII 235 (286)
T ss_pred HHHhCCCEEEEecchhhcCHHHHhhcc-CCceecCcccCCCCCCCCHHHHHHHCCCCeEEEEEEEEcCC--CcCCCcE
Confidence 333333344555532222 1222221 12333 13346677777888887753 3333433 2456666
No 463
>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases. Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et
Probab=65.30 E-value=48 Score=31.38 Aligned_cols=87 Identities=20% Similarity=0.294 Sum_probs=52.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.++|.|+|++|.+|..+..+.+.. .++|+..+-. . . .+.++++..+.+.-....... +
T Consensus 145 ~~~vlv~g~~g~~g~~~~~~a~~~--g~~v~~~~~~-~--~-~~~~~~~g~~~~~~~~~~~~~-------------~--- 202 (309)
T cd05289 145 GQTVLIHGAAGGVGSFAVQLAKAR--GARVIATASA-A--N-ADFLRSLGADEVIDYTKGDFE-------------R--- 202 (309)
T ss_pred CCEEEEecCCchHHHHHHHHHHHc--CCEEEEEecc-h--h-HHHHHHcCCCEEEeCCCCchh-------------h---
Confidence 368999999999999999999876 6778776532 2 2 334466665443321111100 0
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
......+|++++.+.|. .+...+.++..+
T Consensus 203 -------~~~~~~~d~v~~~~~~~-~~~~~~~~l~~~ 231 (309)
T cd05289 203 -------AAAPGGVDAVLDTVGGE-TLARSLALVKPG 231 (309)
T ss_pred -------ccCCCCceEEEECCchH-HHHHHHHHHhcC
Confidence 11223588999875554 555556665544
No 464
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=65.15 E-value=16 Score=35.04 Aligned_cols=43 Identities=19% Similarity=0.249 Sum_probs=31.6
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
||+|+|+||.+|+.....+.+. .++|... .++-+.+.++..++
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~--G~~V~v~--~r~~~~~~~l~~~~ 44 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKA--GNKIIIG--SRDLEKAEEAAAKA 44 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhC--CCEEEEE--EcCHHHHHHHHHHH
Confidence 6999999999999998888775 3677643 45666666555443
No 465
>KOG1221 consensus Acyl-CoA reductase [Lipid transport and metabolism]
Probab=65.06 E-value=14 Score=40.70 Aligned_cols=34 Identities=29% Similarity=0.379 Sum_probs=29.4
Q ss_pred CeeEEEEccCChHhHHHHHH-HHhCCCceEEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDI-VAEHEDKFRVVALA 109 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdV-i~~~pd~f~VvaLa 109 (473)
-|.|.|.|+||+.|+-.++= +|..||-.++.-|-
T Consensus 12 ~k~i~vTG~tGFlgKVliEklLr~~p~v~~IYlLi 46 (467)
T KOG1221|consen 12 NKTIFVTGATGFLGKVLIEKLLRTTPDVKRIYLLI 46 (467)
T ss_pred CCeEEEEcccchhHHHHHHHHHhcCcCcceEEEEE
Confidence 47999999999999999874 56788999998885
No 466
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=65.00 E-value=39 Score=34.27 Aligned_cols=45 Identities=11% Similarity=0.200 Sum_probs=29.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
+||+|+|+ |.+|..+.--+....-..+|+-+ ..|.+++..++.++
T Consensus 1 ~kI~IIGa-G~vG~~~a~~l~~~g~~~ei~l~--D~~~~~~~~~a~dL 45 (306)
T cd05291 1 RKVVIIGA-GHVGSSFAYSLVNQGIADELVLI--DINEEKAEGEALDL 45 (306)
T ss_pred CEEEEECC-CHHHHHHHHHHHhcCCCCEEEEE--eCCcchhhHhHhhH
Confidence 48999996 88999999888776432344443 34556655554443
No 467
>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i
Probab=64.92 E-value=68 Score=31.74 Aligned_cols=94 Identities=10% Similarity=0.111 Sum_probs=52.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCccc-HHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESL-LDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~-~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|+ |++|..++.+.+.. ..+++..+.. +-+.+ ++++++..+.+.-.++.. .....
T Consensus 163 ~~VlI~g~-g~vg~~~~~la~~~--G~~~v~~~~~-~~~~~-~~~~~~g~~~~i~~~~~~~~~~~~-------------- 223 (341)
T cd08262 163 EVALVIGC-GPIGLAVIAALKAR--GVGPIVASDF-SPERR-ALALAMGADIVVDPAADSPFAAWA-------------- 223 (341)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCcEEEEECC-CHHHH-HHHHHcCCcEEEcCCCcCHHHHHH--------------
Confidence 58999985 99999999999987 4554443332 33443 356677765443222211 11111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
.+.+......+|+|++...|...+...+..++.+
T Consensus 224 ---~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~ 257 (341)
T cd08262 224 ---AELARAGGPKPAVIFECVGAPGLIQQIIEGAPPG 257 (341)
T ss_pred ---HHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccC
Confidence 1112222345899998754423455556666544
No 468
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=64.75 E-value=21 Score=33.26 Aligned_cols=17 Identities=53% Similarity=0.702 Sum_probs=14.4
Q ss_pred CeeEEEEccCChHhHHHH
Q 012004 76 PKPISVLGSTGSIGTQTL 93 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtL 93 (473)
.+.++|.|.||| |++|+
T Consensus 25 g~~i~I~G~tGS-GKTTl 41 (186)
T cd01130 25 RKNILISGGTGS-GKTTL 41 (186)
T ss_pred CCEEEEECCCCC-CHHHH
Confidence 357999999999 88874
No 469
>cd01338 MDH_choloroplast_like Chloroplast-like malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are bacterial MDHs, and plant MDHs localized to the choloroplasts. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=64.50 E-value=6.3 Score=40.74 Aligned_cols=49 Identities=20% Similarity=0.285 Sum_probs=32.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhC-----CCceEEEEEeccCCHHHHHHHHHhh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEH-----EDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~-----pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
|+||+|+|++|.||.+++--+... ++..+++-+--+.|.+++..++.++
T Consensus 2 p~KV~IiGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di~~~~~~a~g~a~Dl 55 (322)
T cd01338 2 PVRVAVTGAAGQIGYSLLFRIASGEMFGPDQPVILQLLELPQALKALEGVAMEL 55 (322)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEEecCCcccccceeehhh
Confidence 689999999999999987766531 2333565555555555555554443
No 470
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=64.46 E-value=29 Score=33.18 Aligned_cols=45 Identities=16% Similarity=0.077 Sum_probs=31.3
Q ss_pred eEEEEccCChHhHHHHHHHHhC--CCceEEEEEeccCCHHHHHHHHHhh
Q 012004 78 PISVLGSTGSIGTQTLDIVAEH--EDKFRVVALAAGSNITLLADQVKRF 124 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~--pd~f~VvaLaa~~Nv~~L~~q~~~f 124 (473)
.+.|.|+||.||..+..-+.+. ...++|+.+ ++|.+.+.+.+.+.
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~~V~~~--~r~~~~~~~~~~~l 48 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGSVLVLS--ARNDEALRQLKAEI 48 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCcEEEEE--EcCHHHHHHHHHHH
Confidence 4789999999999988777652 136777765 45666665555544
No 471
>PRK05928 hemD uroporphyrinogen-III synthase; Reviewed
Probab=64.44 E-value=56 Score=30.78 Aligned_cols=145 Identities=12% Similarity=0.158 Sum_probs=82.8
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhh---CCCEEEEeCcccHHHHHHHHhcCCCCcE---EE---ech
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRF---KPQVVAVRNESLLDEIKEALANVEEKPE---IL---AGE 157 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f---~P~~v~v~de~~~~~l~~~l~~~~~~~~---v~---~G~ 157 (473)
.||..|-+.++++ .|++.-+....+.+.|++...+. ..+.+.+..+.....+.+.|...|..+. ++ .-+
T Consensus 86 avG~~Ta~~l~~~--G~~~~~~~~~~~~~~l~~~l~~~~~~~~~ili~~~~~~~~~l~~~L~~~G~~v~~~~~Y~~~~~~ 163 (249)
T PRK05928 86 AIGEKTALALKKL--GGKVVFVPEDGESSELLLELPELLLKGKRVLYLRGNGGREVLGDTLEERGAEVDECEVYERVPPK 163 (249)
T ss_pred EECHHHHHHHHHc--CCCccccCCCCcChHHHHhChhhhcCCCEEEEECCCCCHHHHHHHHHHCCCEEeEEEEEEeeCCC
Confidence 5689999999987 56655444444556666655543 3445555666666678777765442221 11 111
Q ss_pred hh---HHHhhcCCCCCEEEEecccccCcHHHHHHHHc-CCcccccccceeeeccccchHHHhhcCC--eEeecccchhhH
Q 012004 158 QG---VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA-GKDIALANKETLIAGGPFVLPLAHKHNI--KILPADSEHSAI 231 (473)
Q Consensus 158 eg---l~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~-GK~IaLANKESLV~aG~li~~~a~~~~~--~IlPVDSEHsAI 231 (473)
.. ..+.....++|.|+..- -.+..-.+..++. +....+. +=.++|-|+-..+.++++|. .++|=+.-..++
T Consensus 164 ~~~~~~~~~~~~~~~d~ivftS--~~~v~~~~~~~~~~~~~~~~~-~~~~~aiG~~Ta~~l~~~G~~~~~~~~~~~~~~l 240 (249)
T PRK05928 164 LDGAELLARLQSGEVDAVIFTS--PSTVRAFFSLAPELGRREWLL-SCKAVVIGERTAEALRELGIKVIIVPDSADNEAL 240 (249)
T ss_pred CChHHHHHHHHhCCCCEEEECC--HHHHHHHHHHhcccchhHHHh-CCeEEEeCHHHHHHHHHcCCCcceecCCCChHHH
Confidence 11 11211134688877653 2233443444332 2222222 33589999999999999984 456766666667
Q ss_pred HHhhc
Q 012004 232 FQCIQ 236 (473)
Q Consensus 232 fQcL~ 236 (473)
.++|.
T Consensus 241 ~~~l~ 245 (249)
T PRK05928 241 LRALK 245 (249)
T ss_pred HHHHH
Confidence 77764
No 472
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=64.41 E-value=68 Score=31.04 Aligned_cols=65 Identities=14% Similarity=0.055 Sum_probs=39.6
Q ss_pred CeeEEEEccC--ChHhHHHHHHHHhCCCceEEEEEec-cCCHHHHHHHHHhhCC-CEEE-EeCcccHHHHHH
Q 012004 76 PKPISVLGST--GSIGTQTLDIVAEHEDKFRVVALAA-GSNITLLADQVKRFKP-QVVA-VRNESLLDEIKE 142 (473)
Q Consensus 76 ~k~I~ILGST--GSIG~qtLdVi~~~pd~f~VvaLaa-~~Nv~~L~~q~~~f~P-~~v~-v~de~~~~~l~~ 142 (473)
.|.++|.|++ +-||..+..-+.+. .++|+...- .++.+.+.+...+.+. +... ..|-.+.+.+.+
T Consensus 7 ~k~~lItGa~~s~GIG~aia~~la~~--G~~v~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~Dv~d~~~v~~ 76 (257)
T PRK08594 7 GKTYVVMGVANKRSIAWGIARSLHNA--GAKLVFTYAGERLEKEVRELADTLEGQESLLLPCDVTSDEEITA 76 (257)
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHC--CCEEEEecCcccchHHHHHHHHHcCCCceEEEecCCCCHHHHHH
Confidence 3789999997 89999988888875 567765421 1344566666665532 2222 244444444443
No 473
>PRK01222 N-(5'-phosphoribosyl)anthranilate isomerase; Provisional
Probab=64.26 E-value=1.2e+02 Score=29.58 Aligned_cols=120 Identities=15% Similarity=0.152 Sum_probs=70.8
Q ss_pred cCChHhHH-HHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCC-cEEE-ech-hh
Q 012004 84 STGSIGTQ-TLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK-PEIL-AGE-QG 159 (473)
Q Consensus 84 STGSIG~q-tLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~-~~v~-~G~-eg 159 (473)
|--+|-.. +-++.+..|...+.||+..+.+.+.+.+.++++++++|=+........++..-...+.. ++++ ..+ +.
T Consensus 35 S~R~V~~~~a~~i~~~~~~~i~~VgVf~~~~~~~i~~~~~~~~~d~vQLHg~e~~~~~~~l~~~~~~~iik~i~v~~~~~ 114 (210)
T PRK01222 35 SPRYVSPEQAAELAAALPPFVKVVGVFVNASDEEIDEIVETVPLDLLQLHGDETPEFCRQLKRRYGLPVIKALRVRSAGD 114 (210)
T ss_pred CCCcCCHHHHHHHHHhCCCCCCEEEEEeCCCHHHHHHHHHhcCCCEEEECCCCCHHHHHHHHhhcCCcEEEEEecCCHHH
Confidence 44445443 44455556667889999999999999999999999999997554443333221111111 1222 222 22
Q ss_pred HHHhhc-CCCCCEEE-Eecc---cccCcHHHHHHHHcCCcccccccceeeeccc
Q 012004 160 VIEAAR-HPDAVTVV-TGIV---GCAGLKPTVAAIEAGKDIALANKETLIAGGP 208 (473)
Q Consensus 160 l~~la~-~~~~D~Vv-~AIv---G~aGL~ptl~Ai~~GK~IaLANKESLV~aG~ 208 (473)
+..+.. ...+|.++ ++-+ |-.|..--+..+.. .+ .+..+++||=
T Consensus 115 l~~~~~~~~~~d~~L~Ds~~~~~GGtG~~~dw~~l~~--~~---~~p~~LAGGi 163 (210)
T PRK01222 115 LEAAAAYYGDADGLLLDAYVGLPGGTGKTFDWSLLPA--GL---AKPWILAGGL 163 (210)
T ss_pred HHHHHhhhccCCEEEEcCCCCCCCCCCCccchHHhhh--cc---CCCEEEECCC
Confidence 433322 12467544 4433 77788777776632 22 5677777773
No 474
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=64.21 E-value=44 Score=32.76 Aligned_cols=86 Identities=16% Similarity=0.186 Sum_probs=52.3
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.| +|++|..++.+.+.. ..+|++.+. +-+. .+.++++....+...+. .
T Consensus 157 ~~vlV~g-~g~vg~~~~q~a~~~--G~~vi~~~~--~~~~-~~~~~~~g~~~~~~~~~------------------~--- 209 (319)
T cd08242 157 DKVAVLG-DGKLGLLIAQVLALT--GPDVVLVGR--HSEK-LALARRLGVETVLPDEA------------------E--- 209 (319)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCeEEEEcC--CHHH-HHHHHHcCCcEEeCccc------------------c---
Confidence 5899998 699999999999987 566766543 3333 34555566544332110 0
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
.....+|.+++.+-+-..+.-...+++.+-++.
T Consensus 210 -------~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v 242 (319)
T cd08242 210 -------SEGGGFDVVVEATGSPSGLELALRLVRPRGTVV 242 (319)
T ss_pred -------ccCCCCCEEEECCCChHHHHHHHHHhhcCCEEE
Confidence 112358999987544345555566666665443
No 475
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=64.05 E-value=40 Score=34.27 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=52.6
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.|+ |+||..++.+.+.. .. +|+++.. +-+++ +.++++..+.+.-..+.. ..+.
T Consensus 186 ~~vlV~G~-g~vG~~~~~~a~~~--G~~~Vi~~~~--~~~~~-~~~~~~ga~~~i~~~~~~-~~~~-------------- 244 (365)
T cd08277 186 STVAVFGL-GAVGLSAIMGAKIA--GASRIIGVDI--NEDKF-EKAKEFGATDFINPKDSD-KPVS-------------- 244 (365)
T ss_pred CEEEEECC-CHHHHHHHHHHHHc--CCCeEEEEeC--CHHHH-HHHHHcCCCcEecccccc-chHH--------------
Confidence 58999985 99999999999887 45 4665543 33333 344677766554322111 0111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEA 191 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~ 191 (473)
+.+.++.. ..+|+|+++..+-..+.-.+.+++.
T Consensus 245 --~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~ 277 (365)
T cd08277 245 --EVIREMTG-GGVDYSFECTGNADLMNEALESTKL 277 (365)
T ss_pred --HHHHHHhC-CCCCEEEECCCChHHHHHHHHhccc
Confidence 11222233 3589999876554455555555543
No 476
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=64.04 E-value=42 Score=28.85 Aligned_cols=46 Identities=13% Similarity=0.235 Sum_probs=36.8
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN 133 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d 133 (473)
.+|..-+...-+. ..|+|+-|-.....+.+.+.+.+.+|+.|+++-
T Consensus 13 ~lG~~~~~~~l~~-~G~~V~~lg~~~~~~~l~~~~~~~~pdvV~iS~ 58 (119)
T cd02067 13 DIGKNIVARALRD-AGFEVIDLGVDVPPEEIVEAAKEEDADAIGLSG 58 (119)
T ss_pred hHHHHHHHHHHHH-CCCEEEECCCCCCHHHHHHHHHHcCCCEEEEec
Confidence 3666655555442 589999988888899999999999999999864
No 477
>PF10662 PduV-EutP: Ethanolamine utilisation - propanediol utilisation; InterPro: IPR012381 Members of this family function in ethanolamine [] and propanediol [] degradation pathways. Both pathways require coenzyme B12 (adenosylcobalamin, AdoCbl). Bacteria that harbour these pathways can use ethanolamine as a source of carbon and nitrogen, or propanediol as a sole carbon and energy source, respectively. The exact roles of the EutP and PduV proteins in these respective pathways are not yet determined. Members of this family contain P-loop consensus motifs in the N-terminal part, and are distantly related to various GTPases and ATPases, including ATPase components of transport systems. Propanediol degradation is thought to be important for the natural Salmonella populations, since propanediol is produced by the fermentation of the common plant sugars rhamnose and fucose [, ]. More than 1% of the Salmonella enterica genome is devoted to the utilisation of propanediol and cobalamin biosynthesis. In vivo expression technology has indicated that propanediol utilisation (pdu) genes may be important for growth in host tissues, and competitive index studies with mice have shown that pdu mutations confer a virulence defect [, ]. The pdu operon is contiguous and co-regulated with the cobalamin (B12) biosynthesis cob operon, indicating that propanediol catabolism may be the primary reason for de novo B12 synthesis in Salmonella [, , ]. Please see IPR003207 from INTERPRO, IPR003208 from INTERPRO, IPR009204 from INTERPRO, IPR009191 from INTERPRO, IPR009192 from INTERPRO for more details on the propanediol utilisation pathway and the pdu operon.; GO: 0005524 ATP binding, 0006576 cellular biogenic amine metabolic process
Probab=63.48 E-value=4.6 Score=37.61 Aligned_cols=22 Identities=36% Similarity=0.534 Sum_probs=18.4
Q ss_pred CeeEEEEccCChHhHHHHHHHHh
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAE 98 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~ 98 (473)
||||.+.|.+|| |+.||-=.-.
T Consensus 1 MkrimliG~~g~-GKTTL~q~L~ 22 (143)
T PF10662_consen 1 MKRIMLIGPSGS-GKTTLAQALN 22 (143)
T ss_pred CceEEEECCCCC-CHHHHHHHHc
Confidence 799999999999 9999855433
No 478
>PRK07121 hypothetical protein; Validated
Probab=63.26 E-value=4.8 Score=43.12 Aligned_cols=36 Identities=28% Similarity=0.402 Sum_probs=33.3
Q ss_pred CCCCEEEEecccccCcHHHHHHHHcCCccccccccee
Q 012004 167 PDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETL 203 (473)
Q Consensus 167 ~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESL 203 (473)
.++|+||.+ .|.+||...++|.++|.+|.|.-|...
T Consensus 19 ~~~DVvVVG-aG~AGl~AA~~aae~G~~VillEK~~~ 54 (492)
T PRK07121 19 DEADVVVVG-FGAAGACAAIEAAAAGARVLVLERAAG 54 (492)
T ss_pred CccCEEEEC-cCHHHHHHHHHHHHCCCeEEEEeCCCC
Confidence 479999999 799999999999999999999999876
No 479
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=63.08 E-value=32 Score=36.70 Aligned_cols=46 Identities=15% Similarity=0.212 Sum_probs=33.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKP 126 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P 126 (473)
++|+|+|+ |.||..+...+..+. -.+|+. .+++.+...+.++++..
T Consensus 181 ~~VlViGa-G~iG~~~a~~L~~~G-~~~V~v--~~rs~~ra~~la~~~g~ 226 (417)
T TIGR01035 181 KKALLIGA-GEMGELVAKHLLRKG-VGKILI--ANRTYERAEDLAKELGG 226 (417)
T ss_pred CEEEEECC-hHHHHHHHHHHHHCC-CCEEEE--EeCCHHHHHHHHHHcCC
Confidence 68999997 999999999998763 123332 25667777777777754
No 480
>PLN02702 L-idonate 5-dehydrogenase
Probab=62.96 E-value=77 Score=32.06 Aligned_cols=97 Identities=16% Similarity=0.222 Sum_probs=57.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
++|.|+| .|++|..++.+.+...-+ .|++.. ++-+++ +.++++..+.+...+... ..+.+.
T Consensus 183 ~~vlI~g-~g~vG~~~~~~a~~~G~~-~v~~~~--~~~~~~-~~~~~~g~~~~~~~~~~~-~~~~~~------------- 243 (364)
T PLN02702 183 TNVLVMG-AGPIGLVTMLAARAFGAP-RIVIVD--VDDERL-SVAKQLGADEIVLVSTNI-EDVESE------------- 243 (364)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHcCCC-EEEEEC--CCHHHH-HHHHHhCCCEEEecCccc-ccHHHH-------------
Confidence 5899997 599999999999986322 133332 333443 367778776665433211 011111
Q ss_pred hhhHHHh--hcCCCCCEEEEecccccCcHHHHHHHHcCCcc
Q 012004 157 EQGVIEA--ARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDI 195 (473)
Q Consensus 157 ~egl~~l--a~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~I 195 (473)
+.++ .....+|+|++.+.+-..+...+..++.+-++
T Consensus 244 ---~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~ 281 (364)
T PLN02702 244 ---VEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKV 281 (364)
T ss_pred ---HHHHhhhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEE
Confidence 1111 11235899999876566788888888776553
No 481
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=62.66 E-value=53 Score=32.27 Aligned_cols=87 Identities=13% Similarity=0.130 Sum_probs=54.1
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEec
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILAG 156 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~G 156 (473)
.+|.|.| +|.+|..++.+.+.. .++|++++... +.+ +.++++..+.+.-.++.
T Consensus 169 ~~vlV~g-~g~vg~~~~~la~~~--g~~v~~~~~~~--~~~-~~~~~~g~~~~~~~~~~--------------------- 221 (329)
T cd08298 169 QRLGLYG-FGASAHLALQIARYQ--GAEVFAFTRSG--EHQ-ELARELGADWAGDSDDL--------------------- 221 (329)
T ss_pred CEEEEEC-CcHHHHHHHHHHHHC--CCeEEEEcCCh--HHH-HHHHHhCCcEEeccCcc---------------------
Confidence 5788887 799999999998876 47887765432 332 44466665433211110
Q ss_pred hhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccccc
Q 012004 157 EQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALA 198 (473)
Q Consensus 157 ~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLA 198 (473)
....+|+++....+...+...+..++.|-++.+.
T Consensus 222 --------~~~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~ 255 (329)
T cd08298 222 --------PPEPLDAAIIFAPVGALVPAALRAVKKGGRVVLA 255 (329)
T ss_pred --------CCCcccEEEEcCCcHHHHHHHHHHhhcCCEEEEE
Confidence 0124788887644445677788888776665543
No 482
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=62.35 E-value=64 Score=32.23 Aligned_cols=93 Identities=15% Similarity=0.135 Sum_probs=56.6
Q ss_pred eEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC----CHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEE
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----NITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEI 153 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~----Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v 153 (473)
+|..+..+-+.. -.+.|++. .|.|..+.... +.+.+.+.+++++|+.+++..-....+..+.++..+ +.+
T Consensus 33 ~v~f~~~~~~~~--~~~~i~~~--g~~v~~~~~~~~~~~d~~~~~~~l~~~~~d~vV~D~y~~~~~~~~~~k~~~--~~l 106 (279)
T TIGR03590 33 EVAFACKPLPGD--LIDLLLSA--GFPVYELPDESSRYDDALELINLLEEEKFDILIVDHYGLDADWEKLIKEFG--RKI 106 (279)
T ss_pred EEEEEeCCCCHH--HHHHHHHc--CCeEEEecCCCchhhhHHHHHHHHHhcCCCEEEEcCCCCCHHHHHHHHHhC--CeE
Confidence 455555443221 24566654 88999987654 467899999999999998866444444555554322 333
Q ss_pred EechhhHHHhhcCCCCCEEEEecccc
Q 012004 154 LAGEQGVIEAARHPDAVTVVTGIVGC 179 (473)
Q Consensus 154 ~~G~egl~~la~~~~~D~Vv~AIvG~ 179 (473)
..=++-.. ....+|+|+|+..+.
T Consensus 107 ~~iDD~~~---~~~~~D~vin~~~~~ 129 (279)
T TIGR03590 107 LVIDDLAD---RPHDCDLLLDQNLGA 129 (279)
T ss_pred EEEecCCC---CCcCCCEEEeCCCCc
Confidence 33222111 223799999997664
No 483
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=61.79 E-value=5 Score=44.55 Aligned_cols=39 Identities=26% Similarity=0.352 Sum_probs=34.5
Q ss_pred CCCEEEEecccccCcHHHHHHHHcCCcccccccceeeecc
Q 012004 168 DAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGG 207 (473)
Q Consensus 168 ~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG 207 (473)
++|+||.| +|.|||...++|.++|.+|.|..|-...-|+
T Consensus 7 ~~DVlVVG-~G~AGl~AAi~Aa~~G~~V~lleK~~~~~g~ 45 (588)
T PRK08958 7 EFDAVVIG-AGGAGMRAALQISQSGQSCALLSKVFPTRSH 45 (588)
T ss_pred ccCEEEEC-ccHHHHHHHHHHHHcCCcEEEEEccCCCCCc
Confidence 58999998 7999999999999999999999999775443
No 484
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=61.63 E-value=26 Score=34.29 Aligned_cols=56 Identities=27% Similarity=0.345 Sum_probs=35.1
Q ss_pred CeeEEEEccCChHhHHHHH--HHHhCCCc-eEEEEEe-------------------ccCCHHHHHHHHHhhCCCEEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLD--IVAEHEDK-FRVVALA-------------------AGSNITLLADQVKRFKPQVVAVR 132 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLd--Vi~~~pd~-f~VvaLa-------------------a~~Nv~~L~~q~~~f~P~~v~v~ 132 (473)
.+.|.|.|.||| |+.|+= .+...|+. .+++.+- ...+.+.+.+.+.+-+|+++++.
T Consensus 127 ~~~ili~G~tGS-GKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~~~~~~~~~~~~~~~~~~l~~~LR~~pD~iiig 204 (270)
T PF00437_consen 127 RGNILISGPTGS-GKTTLLNALLEEIPPEDERIVTIEDPPELRLPGPNQIQIQTRRDEISYEDLLKSALRQDPDVIIIG 204 (270)
T ss_dssp TEEEEEEESTTS-SHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCSSEEEEEEETTTBSHHHHHHHHTTS--SEEEES
T ss_pred ceEEEEECCCcc-ccchHHHHHhhhccccccceEEeccccceeecccceEEEEeecCcccHHHHHHHHhcCCCCccccc
Confidence 378999999999 887752 33444444 4443322 23466777777777788888763
No 485
>TIGR03013 EpsB_2 sugar transferase, PEP-CTERM system associated. Members of this protein family belong to the family of bacterial sugar transferases (pfam02397). Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria (notable exceptions appear to include Magnetococcus sp. MC-1 and Myxococcus xanthus DK 1622 ). These genes are generally found near one or more of the PrsK, PrsR or PrsT genes that have been related to the PEP-CTERM system by phylogenetic profiling methods. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species. These proteins are homologs of the EpsB protien found in Methylobacillus sp. strain 12S, which is also associated with a PEP-CTERM system, but of a distinct type. A name which appears attached to a number of genes (by transitive annotation) in this family is "undecapre
Probab=61.44 E-value=69 Score=34.23 Aligned_cols=59 Identities=17% Similarity=0.231 Sum_probs=46.3
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCC-ceEEEEEec-------------cCCHHHHHHHHHhhCCCEEEEeCcc
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAA-------------GSNITLLADQVKRFKPQVVAVRNES 135 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd-~f~VvaLaa-------------~~Nv~~L~~q~~~f~P~~v~v~de~ 135 (473)
.+++.|+|+ |.-|....+..+++|+ .|+++|+.. ..+.+.+.+.+++.+.+.|.++.+.
T Consensus 124 ~rrvLIIGa-g~~~~~L~~l~~~~~~~g~~vVGfi~~dd~~~~i~gvpVlG~~~dl~~~v~~~~Id~ViIAlp~ 196 (442)
T TIGR03013 124 KRRILVLGT-GPRAREIARLRRSSDRRGHEIVGFVPLPDEPAYVPSEHVIENGDGLVEYVLRHRIDEIVIALDE 196 (442)
T ss_pred CCcEEEEEC-CHHHHHHHHHHHhCccCCeEEEEEEcCCccccccCCCcccCCHHHHHHHHHhCCCCEEEEECch
Confidence 478999986 5668888777666665 799999872 1367889999999999999997654
No 486
>PRK08618 ornithine cyclodeaminase; Validated
Probab=61.43 E-value=62 Score=33.23 Aligned_cols=33 Identities=21% Similarity=0.136 Sum_probs=23.0
Q ss_pred HHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 160 VIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 160 l~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+.+++ .++|+|+++.....-+.. +.++.|+-|.
T Consensus 186 ~~~~~--~~aDiVi~aT~s~~p~i~--~~l~~G~hV~ 218 (325)
T PRK08618 186 ADEAI--EEADIIVTVTNAKTPVFS--EKLKKGVHIN 218 (325)
T ss_pred HHHHH--hcCCEEEEccCCCCcchH--HhcCCCcEEE
Confidence 34444 369999999876654443 8888888863
No 487
>TIGR03023 WcaJ_sugtrans Undecaprenyl-phosphate glucose phosphotransferase. Colanic acid biosynthesis utilizes a glucose-undecaprenyl carrier, knockout of EpsB abolishes incorporation of UDP-glucose into the lipid phase and the C-terminal portion of GumD has been shown to be responsible for the glucosyl-1-transferase activity.
Probab=61.39 E-value=41 Score=35.70 Aligned_cols=60 Identities=13% Similarity=0.264 Sum_probs=47.5
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCC-ceEEEEEecc--------------CCHHHHHHHHHhhCCCEEEEeCcc
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHED-KFRVVALAAG--------------SNITLLADQVKRFKPQVVAVRNES 135 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd-~f~VvaLaa~--------------~Nv~~L~~q~~~f~P~~v~v~de~ 135 (473)
..+++.|+|+. .-|.+..+-++++|+ .|+++|+.-. .+.+.|.+.+++.+.+.|.++.+.
T Consensus 127 ~~~rvLIiGag-~~~~~l~~~L~~~~~~g~~vvG~idd~~~~~~~~~gvpVlg~~~dl~~~i~~~~vd~ViIA~p~ 201 (451)
T TIGR03023 127 NLRRVLIVGAG-ELGRRLAERLARNPELGYRVVGFFDDRPDARTGVRGVPVLGKLDDLEELIREGEVDEVYIALPL 201 (451)
T ss_pred CCCcEEEEeCC-HHHHHHHHHHHhCccCCcEEEEEEeCCCccccccCCCCccCCHHHHHHHHHhcCCCEEEEeeCc
Confidence 34789999964 568888998888765 7999998532 246889999999999999997654
No 488
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=61.38 E-value=52 Score=32.72 Aligned_cols=48 Identities=10% Similarity=0.236 Sum_probs=30.0
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEE
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVV 129 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v 129 (473)
.+|.|.|+ |++|..++.+.+.... .+|++.+ ++-++ .+.++++..+.+
T Consensus 168 ~~vlI~g~-g~~g~~~~~~a~~~G~-~~v~~~~--~~~~~-~~~~~~~g~~~~ 215 (345)
T cd08286 168 DTVAIVGA-GPVGLAALLTAQLYSP-SKIIMVD--LDDNR-LEVAKKLGATHT 215 (345)
T ss_pred CEEEEECC-CHHHHHHHHHHHHcCC-CeEEEEc--CCHHH-HHHHHHhCCCce
Confidence 57888876 9999999998887741 4455532 23333 234456655443
No 489
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=61.19 E-value=27 Score=36.29 Aligned_cols=113 Identities=18% Similarity=0.292 Sum_probs=73.3
Q ss_pred eEEEEccCChHhHHHHHHHHhCCC-------ceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCC
Q 012004 78 PISVLGSTGSIGTQTLDIVAEHED-------KFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEK 150 (473)
Q Consensus 78 ~I~ILGSTGSIG~qtLdVi~~~pd-------~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~ 150 (473)
+|+|.|+ |-||..-|+-|..+.. .|+|++++--... + .-+.|.|..+ -.+++..|....
T Consensus 5 nVa~~G~-G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~--~--~skD~~p~nl-------~sewk~~L~~st-- 70 (364)
T KOG0455|consen 5 NVALMGC-GGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESL--V--ASKDVLPENL-------NSEWKSELIKST-- 70 (364)
T ss_pred cEEEEec-cchHHHHHHHHHHHhhhhccCceEEEEEEEeccccc--c--cccccChhhh-------chHHHHHHHHhc--
Confidence 6888885 6689999998877654 7999998743211 1 1355555443 245555443221
Q ss_pred cEEEechhhHH-HhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeee
Q 012004 151 PEILAGEQGVI-EAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIA 205 (473)
Q Consensus 151 ~~v~~G~egl~-~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~ 205 (473)
..-+. -++|+ .++..+.+-++|+-.+-..=..--..+++.|-.|+++||...-+
T Consensus 71 ~~als-LdaLia~L~~sp~p~ilVDntaS~~ia~~y~Kfv~~gi~IatpNKKafss 125 (364)
T KOG0455|consen 71 GSALS-LDALIAKLLGSPTPLILVDNTASMEIAEIYMKFVDLGICIATPNKKAFSS 125 (364)
T ss_pred CCccc-HHHHHHHHcCCCCceEEEecccHHHHHHHHHHHHhcCceEecCCcccccc
Confidence 11233 34444 57778888888876666555555678999999999999986443
No 490
>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh
Probab=61.16 E-value=53 Score=31.44 Aligned_cols=90 Identities=17% Similarity=0.196 Sum_probs=54.6
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
..++.|.|++|.+|..++.+.+.. ..+|++.+ +. +.+ +.++++..+.+.-.... ..
T Consensus 145 ~~~vli~g~~~~~g~~~~~~a~~~--g~~v~~~~--~~-~~~-~~~~~~g~~~~~~~~~~----~~-------------- 200 (326)
T cd08272 145 GQTVLIHGGAGGVGHVAVQLAKAA--GARVYATA--SS-EKA-AFARSLGADPIIYYRET----VV-------------- 200 (326)
T ss_pred CCEEEEEcCCCcHHHHHHHHHHHc--CCEEEEEe--ch-HHH-HHHHHcCCCEEEecchh----HH--------------
Confidence 368999999999999999999887 56676654 22 433 33456665443321111 11
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAG 192 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~G 192 (473)
+.+.++.....+|.|++.+.| ..+...+.++..+
T Consensus 201 --~~~~~~~~~~~~d~v~~~~~~-~~~~~~~~~l~~~ 234 (326)
T cd08272 201 --EYVAEHTGGRGFDVVFDTVGG-ETLDASFEAVALY 234 (326)
T ss_pred --HHHHHhcCCCCCcEEEECCCh-HHHHHHHHHhccC
Confidence 112223333358999998766 4566666666544
No 491
>PRK07206 hypothetical protein; Provisional
Probab=61.05 E-value=43 Score=34.77 Aligned_cols=57 Identities=14% Similarity=0.239 Sum_probs=38.9
Q ss_pred CCeeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccC----------------------CHHHHHHHHHhhCCCEEEEe
Q 012004 75 GPKPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGS----------------------NITLLADQVKRFKPQVVAVR 132 (473)
Q Consensus 75 ~~k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~----------------------Nv~~L~~q~~~f~P~~v~v~ 132 (473)
+||+|+|+|+. +.|....+-+++. .|+++.+.... +.+.+.+.+++++++.|...
T Consensus 1 ~~k~~liv~~~-~~~~~~~~a~~~~--G~~~v~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~d~vi~~ 77 (416)
T PRK07206 1 MMKKVVIVDPF-SSGKFLAPAFKKR--GIEPIAVTSSCLLDPYYYASFDTSDFIEVIINGDIDDLVEFLRKLGPEAIIAG 77 (416)
T ss_pred CCCeEEEEcCC-chHHHHHHHHHHc--CCeEEEEEcCCCCchhhhcccCcccchhhhcCCCHHHHHHHHHHcCCCEEEEC
Confidence 58999999985 5588777777775 88888776432 23455666666666666654
Q ss_pred Cc
Q 012004 133 NE 134 (473)
Q Consensus 133 de 134 (473)
.|
T Consensus 78 ~e 79 (416)
T PRK07206 78 AE 79 (416)
T ss_pred CC
Confidence 44
No 492
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=61.02 E-value=41 Score=36.21 Aligned_cols=44 Identities=16% Similarity=0.308 Sum_probs=32.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCC-CceEEEEEeccCCHHHHHHHHHhhC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSNITLLADQVKRFK 125 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~Nv~~L~~q~~~f~ 125 (473)
|+|.|+|+ |-+|+.+..-+..+. .++.|+ +++.+...+.+.+|+
T Consensus 182 kkvlviGa-G~~a~~va~~L~~~g~~~I~V~----nRt~~ra~~La~~~~ 226 (414)
T PRK13940 182 KNVLIIGA-GQTGELLFRHVTALAPKQIMLA----NRTIEKAQKITSAFR 226 (414)
T ss_pred CEEEEEcC-cHHHHHHHHHHHHcCCCEEEEE----CCCHHHHHHHHHHhc
Confidence 67999998 888999999888763 333333 567777777777774
No 493
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=60.95 E-value=46 Score=26.84 Aligned_cols=82 Identities=9% Similarity=0.012 Sum_probs=50.7
Q ss_pred eEEEEccCChHhHHH-----HHHHHhCC--CceEEEEEeccCCHHHHHHHHHhhCCCEEEEe-CcccHHHHHHHHhcCCC
Q 012004 78 PISVLGSTGSIGTQT-----LDIVAEHE--DKFRVVALAAGSNITLLADQVKRFKPQVVAVR-NESLLDEIKEALANVEE 149 (473)
Q Consensus 78 ~I~ILGSTGSIG~qt-----LdVi~~~p--d~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~-de~~~~~l~~~l~~~~~ 149 (473)
-+..+.||+.-.... .+..++++ ++|++++++...+.+...+..++++.....+. +......+.+.+.-...
T Consensus 4 ~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~i 83 (95)
T PF13905_consen 4 VLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGINGI 83 (95)
T ss_dssp EEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-TSS
T ss_pred EEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCCCcC
Confidence 466778887766332 34456678 89999999999999999999999855554443 33334566665532222
Q ss_pred CcEEEechhh
Q 012004 150 KPEILAGEQG 159 (473)
Q Consensus 150 ~~~v~~G~eg 159 (473)
..-++.+.+|
T Consensus 84 P~~~lld~~G 93 (95)
T PF13905_consen 84 PTLVLLDPDG 93 (95)
T ss_dssp SEEEEEETTS
T ss_pred CEEEEECCCC
Confidence 2334555544
No 494
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=60.61 E-value=75 Score=31.73 Aligned_cols=95 Identities=16% Similarity=0.278 Sum_probs=56.0
Q ss_pred CeeEEEEccCChHhHHHHHHHHhCCCce-EEEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEE
Q 012004 76 PKPISVLGSTGSIGTQTLDIVAEHEDKF-RVVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEIL 154 (473)
Q Consensus 76 ~k~I~ILGSTGSIG~qtLdVi~~~pd~f-~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~ 154 (473)
..+|.|+| +|++|..+..+.+.. .+ .|++++ ++-+.+ +.++++..+.+. .+.+. .+
T Consensus 176 ~~~vlI~g-~g~vg~~~~~~a~~~--G~~~v~~~~--~~~~~~-~~~~~~g~~~~~-~~~~~--~~-------------- 232 (350)
T cd08240 176 DEPVVIIG-AGGLGLMALALLKAL--GPANIIVVD--IDEAKL-EAAKAAGADVVV-NGSDP--DA-------------- 232 (350)
T ss_pred CCEEEEEC-CcHHHHHHHHHHHHc--CCCeEEEEe--CCHHHH-HHHHHhCCcEEe-cCCCc--cH--------------
Confidence 36899997 599999999999987 56 454443 333333 344666654332 21110 00
Q ss_pred echhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 155 AGEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 155 ~G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
.+.+.+.... .+|+|++...+-..+...+.++..+-++.
T Consensus 233 --~~~~~~~~~~-~~d~vid~~g~~~~~~~~~~~l~~~g~~v 271 (350)
T cd08240 233 --AKRIIKAAGG-GVDAVIDFVNNSATASLAFDILAKGGKLV 271 (350)
T ss_pred --HHHHHHHhCC-CCcEEEECCCCHHHHHHHHHHhhcCCeEE
Confidence 1223333333 68999987654456777777777665543
No 495
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=60.50 E-value=37 Score=34.61 Aligned_cols=45 Identities=16% Similarity=0.189 Sum_probs=26.5
Q ss_pred eeEEEEccCChHhHHHHHHHHhCC-CceEEEEEeccCC--HHHHHHHHHhhC
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHE-DKFRVVALAAGSN--ITLLADQVKRFK 125 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~p-d~f~VvaLaa~~N--v~~L~~q~~~f~ 125 (473)
|++.||||-|. +++..-.+.... .+..|+. ++. .++..+.+.+|+
T Consensus 125 k~vlvlGaGGa-arAi~~~l~~~g~~~i~i~n---Rt~~~~~ka~~la~~~~ 172 (288)
T PRK12749 125 KTMVLLGAGGA-STAIGAQGAIEGLKEIKLFN---RRDEFFDKALAFAQRVN 172 (288)
T ss_pred CEEEEECCcHH-HHHHHHHHHHCCCCEEEEEe---CCccHHHHHHHHHHHhh
Confidence 68999999887 777666555532 3333332 321 345555555554
No 496
>COG1087 GalE UDP-glucose 4-epimerase [Cell envelope biogenesis, outer membrane]
Probab=60.43 E-value=40 Score=35.65 Aligned_cols=63 Identities=16% Similarity=0.149 Sum_probs=41.7
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEec--cCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhc
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAA--GSNITLLADQVKRFKPQVVAVRNESLLDEIKEALAN 146 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa--~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~ 146 (473)
++|.|.|..|.||..|..-+.+. .|+|+-+=- +++.+.+.... ++++. .|-.+...|.+.+..
T Consensus 1 ~~iLVtGGAGYIGSHtv~~Ll~~--G~~vvV~DNL~~g~~~~v~~~~----~~f~~-gDi~D~~~L~~vf~~ 65 (329)
T COG1087 1 MKVLVTGGAGYIGSHTVRQLLKT--GHEVVVLDNLSNGHKIALLKLQ----FKFYE-GDLLDRALLTAVFEE 65 (329)
T ss_pred CeEEEecCcchhHHHHHHHHHHC--CCeEEEEecCCCCCHHHhhhcc----CceEE-eccccHHHHHHHHHh
Confidence 47999999999999999999885 899988743 34444443221 33332 444455556665554
No 497
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=60.37 E-value=60 Score=34.41 Aligned_cols=88 Identities=18% Similarity=0.305 Sum_probs=63.4
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHHHhhCCCEEEEeC-cccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQVKRFKPQVVAVRN-ESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~~~f~P~~v~v~d-e~~~~~l~~~l~~~~~~~~v~~ 155 (473)
++|+|.|.- -.|-.++.+.+.. ..+|+|++-+.+-. +.++++.-+++..+. ++..+.++
T Consensus 168 ~~V~I~G~G-GlGh~avQ~Aka~--ga~Via~~~~~~K~---e~a~~lGAd~~i~~~~~~~~~~~~-------------- 227 (339)
T COG1064 168 KWVAVVGAG-GLGHMAVQYAKAM--GAEVIAITRSEEKL---ELAKKLGADHVINSSDSDALEAVK-------------- 227 (339)
T ss_pred CEEEEECCc-HHHHHHHHHHHHc--CCeEEEEeCChHHH---HHHHHhCCcEEEEcCCchhhHHhH--------------
Confidence 799999998 4699999999876 49999998654433 457888888887643 22111111
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCccc
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIA 196 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~Ia 196 (473)
+ .+|.+++.++ -.-+.+.+.+++.|=++.
T Consensus 228 ---------~--~~d~ii~tv~-~~~~~~~l~~l~~~G~~v 256 (339)
T COG1064 228 ---------E--IADAIIDTVG-PATLEPSLKALRRGGTLV 256 (339)
T ss_pred ---------h--hCcEEEECCC-hhhHHHHHHHHhcCCEEE
Confidence 1 1888888888 888888888888876543
No 498
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=60.33 E-value=78 Score=31.35 Aligned_cols=91 Identities=16% Similarity=0.203 Sum_probs=49.8
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceE-EEEEeccCCHHHHHHHHHhhCCCEEEEeCcccHHHHHHHHhcCCCCcEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFR-VVALAAGSNITLLADQVKRFKPQVVAVRNESLLDEIKEALANVEEKPEILA 155 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~-VvaLaa~~Nv~~L~~q~~~f~P~~v~v~de~~~~~l~~~l~~~~~~~~v~~ 155 (473)
.+|.|.| +|++|..++.+.+.. ..+ |++++... +. .+..+++....+.-.+......
T Consensus 161 ~~vlI~g-~g~~g~~~~~lA~~~--G~~~v~~~~~~~--~~-~~~l~~~g~~~~~~~~~~~~~~---------------- 218 (343)
T cd08236 161 DTVVVIG-AGTIGLLAIQWLKIL--GAKRVIAVDIDD--EK-LAVARELGADDTINPKEEDVEK---------------- 218 (343)
T ss_pred CEEEEEC-CCHHHHHHHHHHHHc--CCCEEEEEcCCH--HH-HHHHHHcCCCEEecCccccHHH----------------
Confidence 4788886 488888888888776 343 55543221 22 2233455544333221111222
Q ss_pred chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCC
Q 012004 156 GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGK 193 (473)
Q Consensus 156 G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK 193 (473)
+.......++|++++.+-+-..+...+.+++.+-
T Consensus 219 ----~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G 252 (343)
T cd08236 219 ----VRELTEGRGADLVIEAAGSPATIEQALALARPGG 252 (343)
T ss_pred ----HHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCC
Confidence 2222333358999998655456677777776543
No 499
>PRK06398 aldose dehydrogenase; Validated
Probab=60.26 E-value=13 Score=35.84 Aligned_cols=31 Identities=23% Similarity=0.330 Sum_probs=26.9
Q ss_pred eeEEEEccCChHhHHHHHHHHhCCCceEEEEEe
Q 012004 77 KPISVLGSTGSIGTQTLDIVAEHEDKFRVVALA 109 (473)
Q Consensus 77 k~I~ILGSTGSIG~qtLdVi~~~pd~f~VvaLa 109 (473)
|++.|.|+||.||.++..-+.+. .++|+.+.
T Consensus 7 k~vlItGas~gIG~~ia~~l~~~--G~~Vi~~~ 37 (258)
T PRK06398 7 KVAIVTGGSQGIGKAVVNRLKEE--GSNVINFD 37 (258)
T ss_pred CEEEEECCCchHHHHHHHHHHHC--CCeEEEEe
Confidence 78999999999999999999876 57887664
No 500
>PRK05752 uroporphyrinogen-III synthase; Validated
Probab=60.01 E-value=60 Score=31.79 Aligned_cols=144 Identities=16% Similarity=0.194 Sum_probs=88.5
Q ss_pred hHhHHHHHHHHhCCCceEEEEEeccCCHHHHHHHH--Hh----hCCCEEEEeCcccHHHHHHHHhcCCCCcE---EEe--
Q 012004 87 SIGTQTLDIVAEHEDKFRVVALAAGSNITLLADQV--KR----FKPQVVAVRNESLLDEIKEALANVEEKPE---ILA-- 155 (473)
Q Consensus 87 SIG~qtLdVi~~~pd~f~VvaLaa~~Nv~~L~~q~--~~----f~P~~v~v~de~~~~~l~~~l~~~~~~~~---v~~-- 155 (473)
.||..|-+.++++ .|.+.-.....+.+-|.+.. .. -..+.+.+..+.....|.+.|...|..++ ++.
T Consensus 88 aVG~~Ta~al~~~--G~~~~~~p~~~~se~Ll~~~~l~~~~~~~~~~vLi~rg~~~r~~L~~~L~~~G~~v~~~~vY~~~ 165 (255)
T PRK05752 88 SVGAATAAILQDY--GLDVSYPEQGDDSEALLALPALRQALAVPDPRVLIMRGEGGRELLAERLREQGASVDYLELYRRC 165 (255)
T ss_pred EECHHHHHHHHHc--CCCcccCCCCCCcHHHHhChhhhccccCCCCEEEEEccCccHHHHHHHHHHCCCEEeEEEEEeec
Confidence 5799999999987 67766555666777777642 22 13356666667677788888876553332 221
Q ss_pred ----chhhHHHhhcCCCCCEEEEecccccCcHHHHHHHHcCCcccccccceeeeccccchHHHhhcCC--eEeecccchh
Q 012004 156 ----GEQGVIEAARHPDAVTVVTGIVGCAGLKPTVAAIEAGKDIALANKETLIAGGPFVLPLAHKHNI--KILPADSEHS 229 (473)
Q Consensus 156 ----G~egl~~la~~~~~D~Vv~AIvG~aGL~ptl~Ai~~GK~IaLANKESLV~aG~li~~~a~~~~~--~IlPVDSEHs 229 (473)
..+.+.+.....++|.|+.. |+- ++.-.+..+ |.......+=.+||-|+.+-+.+++.|. -+++=+....
T Consensus 166 ~~~~~~~~~~~~~~~~~~d~v~ft-S~~-~~~~~~~~~--~~~~~~~~~~~~~~ig~~ta~a~~~~G~~~~~~a~~~t~~ 241 (255)
T PRK05752 166 LPDYPAGTLLQRVEAERLNGLVVS-SGQ-GFEHLQQLA--GADWPELARLPLFVPSPRVAEQARAAGAQTVVDCRGASAA 241 (255)
T ss_pred CCCCCHHHHHHHHHhCCCCEEEEC-CHH-HHHHHHHHh--ChhHHHhcCceEEEeCHHHHHHHHHcCCCceeeCCCCChH
Confidence 12334454555678988776 222 233333322 2222223334589999999999999985 3345466677
Q ss_pred hHHHhhc
Q 012004 230 AIFQCIQ 236 (473)
Q Consensus 230 AIfQcL~ 236 (473)
+++.+|.
T Consensus 242 ~L~~al~ 248 (255)
T PRK05752 242 ALLAALR 248 (255)
T ss_pred HHHHHHH
Confidence 8888876
Done!