BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012005
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3G4D|A Chain A, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4D|B Chain B, Crystal Structure Of (+)-Delta-Cadinene Synthase From
Gossypium Arboreum And Evolutionary Divergence Of Metal
Binding Motifs For Catalysis
pdb|3G4F|A Chain A, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
pdb|3G4F|B Chain B, Crystal Structure Of (+)- -Cadinene Synthase From
Gossypium Arboreum In Complex With 2-Fluorofarnesyl
Diphosphate
Length = 554
Score = 413 bits (1062), Expect = e-116, Method: Compositional matrix adjust.
Identities = 209/497 (42%), Positives = 306/497 (61%), Gaps = 28/497 (5%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + QKL ID VQRLGV+YHF KEI+D LE I H+ D ++D+Y S+ FRLL
Sbjct: 62 MIVAPMANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLL 121
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
R+HG +SC +S+T+DV G+L LY+ ++L + GEDILDEAI FTT H
Sbjct: 122 REHGYNVSCDVFNKFKDEQGNFKSSVTSDVRGLLELYQASYLRVHGEDILDEAISFTTHH 181
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDF 180
L V + ++ +E++ H+L+ +RR + R+E+R++L +Y + H+K LL FAK+DF
Sbjct: 182 LSLAV--ASLDHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDIESHNKALLEFAKIDF 239
Query: 181 NILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSK 240
N+LQ +H+KE SEI RWW+DLDF +KLPY R+RVVE YFW + GV +EP +S GR L+K
Sbjct: 240 NMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFW-ISGVYFEPQYSLGRKMLTK 298
Query: 241 IICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQE----- 295
+I + ++VDDT+D+Y T+EEL +T A+ RWDI ID +PEYMK +K L+D E
Sbjct: 299 VIAMASIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQL 358
Query: 296 -------------------LVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF 336
L Y EAKW + Y PS +E+K+ +L + + +A+ SF
Sbjct: 359 VAEHGRQYRVEYAKNAMIRLAQSYLVEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSF 418
Query: 337 IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGV 396
+ MGDI + E F+W S+P II A+ I RF+DD+A HKF+ +RE + SA+ECY ++GV
Sbjct: 419 VGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRREDDCSAIECYMEEYGV 478
Query: 397 SEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS 456
+ +EA + V ++WK +N+E L PT +P +L +L+ D +Y +
Sbjct: 479 TAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREGDGYTYVG 537
Query: 457 TMMKDQVELVLRDPIKL 473
K + +L +PI L
Sbjct: 538 KAAKGGITSLLIEPIAL 554
>pdb|3M01|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphosphate
pdb|3M02|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase
Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 334 bits (856), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 287/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 58 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 116
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 177 LESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 234
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 235 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 293
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 294 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 353
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 354 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 413
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 414 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 472
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 473 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 531
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 532 PEKVLKPHIINLLVDSIKI 550
>pdb|5EAS|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 333 bits (855), Expect = 8e-92, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 288/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID+++RLG++YHF KEID+ L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEKVLKPHIINLLVDSIKI 548
>pdb|3LZ9|A Chain A, The Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mut Complexed With (2-Trans,6-Trans)-2-Fluorofarnesyl
Diphospha
pdb|3M00|A Chain A, Crystal Structure Of 5-Epi-Aristolochene Synthase M4
Mutant Complexed With (2-Cis,6-Trans)-2-Fluorofarnesyl
Diphosphate
Length = 550
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 58 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 116
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 117 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 176
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 177 LESAA--PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 234
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 235 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWTL-GVYFEPQYSQARVMLV 293
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 294 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 353
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 354 ELSSAGRSHIVCHAIERMKEIVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYLLATTS 413
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 414 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 472
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 473 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTH 531
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 532 PEKVLKPHIINLLVDSIKI 550
>pdb|5EAU|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum
Length = 548
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAA--PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEKVLKPHIINLLVDSIKI 548
>pdb|4DI5|A Chain A, Co-Crystal Structure Of Wt 5-Epi-Aristolochene Synthase
From Nicotiana Tobaccum With Geraniline
Length = 535
Score = 333 bits (855), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 43 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 101
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 102 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 161
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 162 LESAA--PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 219
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 220 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 278
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 279 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 338
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 339 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 398
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 399 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 457
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 458 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 516
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 517 PEKVLKPHIINLLVDSIKI 535
>pdb|5EAT|A Chain A, 5-Epi-Aristolochene Synthase From Nicotiana Tabacum With
Substrate Analog Farnesyl Hydroxyphosphonate
Length = 548
Score = 333 bits (854), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 288/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID+++RLG++YHF KEID+ L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGRKLADTLNLIDIIERLGISYHFEKEIDEILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEEVLKPHIINLLVDSIKI 548
>pdb|1HXC|A Chain A, Crystal Structure Of Teas C440w
Length = 548
Score = 332 bits (852), Expect = 2e-91, Method: Compositional matrix adjust.
Identities = 189/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAA--PHLKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YFW L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEEVLKPHIINLLVDSIKI 548
>pdb|1HX9|A Chain A, Crystal Structure Of Teas W273s Form 1
pdb|1HXA|A Chain A, Crystal Structure Of Teas W273s Form 2
Length = 548
Score = 328 bits (842), Expect = 3e-90, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YF L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEEVLKPHIINLLVDSIKI 548
>pdb|1HXG|A Chain A, Crystal Structure Of Teas W273sC440W
Length = 548
Score = 328 bits (840), Expect = 6e-90, Method: Compositional matrix adjust.
Identities = 188/499 (37%), Positives = 286/499 (57%), Gaps = 32/499 (6%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLL 60
M+ + K A L LID ++RLG++YHF KEIDD L++I ++ + +D+ +L FRLL
Sbjct: 56 MLLATGMKLADTLNLIDTIERLGISYHFEKEIDDILDQI-YNQNSNCNDLCTSALQFRLL 114
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
RQHG +S SL +DV G+L+LYE +H+ +DIL++A+ F+T H
Sbjct: 115 RQHGFNISPEIFSKFQDENGKFKESLASDVLGLLNLYEASHVRTHADDILEDALAFSTIH 174
Query: 121 LKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSRDDLHDKTLLNFAKLD 179
L+S + + S EQ+ H+L L + V R+E+R+F+ IY ++ + LL FAKLD
Sbjct: 175 LESAAPH--LKSPLREQVTHALEQCLHKGVPRVETRFFISSIYDKEQSKNNVLLRFAKLD 232
Query: 180 FNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLS 239
FN+LQ +H++E ++++RWW+DLDF+ LPY R+RVVE YF L GV +EP +S R+ L
Sbjct: 233 FNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFSAL-GVYFEPQYSQARVMLV 291
Query: 240 KIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF------ 293
K I + ++VDDTFDAYGT +EL+ +T+A+ RWDI ID LP+YMK +K ++D
Sbjct: 292 KTISMISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEK 351
Query: 294 ------------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335
+E+V Y E+ W EGY P + EY S +L + + +A S
Sbjct: 352 ELSSAGRSHIVCHAIERMKEVVRNYNVESTWFIEGYTPPVSEYLSNALATTTYYYLATTS 411
Query: 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHG 395
++ M A+ + FEW NP I+ A+ I R +DD A ++ E+ R + +EC +G
Sbjct: 412 YLGMKS-ATEQDFEWLSKNPKILEASVIIWRVIDDTATYEVEKSRGQIATGIECCMRDYG 470
Query: 396 VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTH 455
+S +EA+ +WK INE LL PT + L I +L+ + Y D TH
Sbjct: 471 ISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIVEVTYIHNLDGYTH 529
Query: 456 -STMMKDQVELVLRDPIKL 473
++K + +L D IK+
Sbjct: 530 PEEVLKPHIINLLVDSIKI 548
>pdb|3N0F|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0F|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens)
pdb|3N0G|A Chain A, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
pdb|3N0G|B Chain B, Crystal Structure Of Isoprene Synthase From Grey Poplar
Leaves (Populus X Canescens) In Complex With Three Mg2+
Ions And Dimethylallyl-S-Thiolodiphosphate
Length = 555
Score = 265 bits (677), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 157/487 (32%), Positives = 259/487 (53%), Gaps = 32/487 (6%)
Query: 13 LCLIDVVQRLGVAYHFIKEIDDALEK-ISHDPFDD--KDDIYIVSLCFRLLRQHGIKMSC 69
L LID VQRLG+ Y F +I AL++ +S FD K ++ +L FRLLRQHG ++S
Sbjct: 68 LELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGVTKTSLHATALSFRLLRQHGFEVSQ 127
Query: 70 XXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQ 129
+L D + +LSLYE + LA+ GE+ILDEA VF +HLK + + +
Sbjct: 128 EAFSGFKDQNGNFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKEL-SEEK 186
Query: 130 VNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQK 189
+ AEQ+ H+L +PL R RLE+ + ++ Y + + ++ LL A LD+N++Q+++Q+
Sbjct: 187 IGKELAEQVNHALELPLHRRTQRLEAVWSIEAYRKKEDANQVLLELAILDYNMIQSVYQR 246
Query: 190 EASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVD 249
+ E +RWWR + KL + R+R++E ++W VGV++EP +S R ++K+ T++D
Sbjct: 247 DLRETSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAKMFSFVTIID 305
Query: 250 DTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID----------------- 292
D +D YGT +EL++FT+AV RWD+ I+ LP+YMK F L +
Sbjct: 306 DIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENI 365
Query: 293 -------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDF-LPIAVASFIFMGDIAS 344
+ +L + EAKWL P+ D+Y + +S L + A F + +I
Sbjct: 366 LPYLTKAWADLCNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKK 425
Query: 345 REIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKA 404
EI + + DII I R +D+A E R ++V CY G+SEE A ++
Sbjct: 426 EEIENLQKYH-DIISRPSHIFRLCNDLASASAEIARGETANSVSCYMRTKGISEELATES 484
Query: 405 LSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVE 464
+ + +WK +N+E L + P ++ +L+ + Y + + + + +V
Sbjct: 485 VMNLIDETWKKMNKE-KLGGSLFAKPFVETAINLARQSHCTYHNGDAHTSPDELTRKRVL 543
Query: 465 LVLRDPI 471
V+ +PI
Sbjct: 544 SVITEPI 550
>pdb|2ONG|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONG|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorogeranyl Diphosphate (Fgpp).
pdb|2ONH|A Chain A, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
pdb|2ONH|B Chain B, Crystal Structure Of Of Limonene Synthase With 2-
Fluorolinalyl Diphosphate(flpp)
Length = 543
Score = 244 bits (624), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 152/491 (30%), Positives = 239/491 (48%), Gaps = 32/491 (6%)
Query: 11 QKLCLIDVVQRLGVAYHFIKEIDDALEKISHD------PFDDKD-DIYIVSLCFRLLRQH 63
++L LID +QR+G++ HF E + L I D PF ++ D+Y SL FRLLR+H
Sbjct: 52 RQLELIDDLQRMGLSDHFQNEFKEILSSIYLDHHYYKNPFPKEERDLYSTSLAFRLLREH 111
Query: 64 GIKMSCXXXXXXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKS 123
G +++ SL++D G+L LYE + L GE L+ A F T L+
Sbjct: 112 GFQVAQEVFDSFKNEEGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEE 171
Query: 124 MVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKLDFNIL 183
V V+ +I +SL +PL + R + +++ Y + + +L A LD NI+
Sbjct: 172 KVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVWIEWYRKRPDMNPVVLELAILDLNIV 231
Query: 184 QAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIIC 243
QA Q+E E RWWR+ F++KLP+ R+R+VE YFW G+ ++ RI + K+
Sbjct: 232 QAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMMGKVNA 290
Query: 244 LETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDF---------- 293
L T++DD +D YGT EEL+ FT+ + RWDI ID LP+YM+ F L +F
Sbjct: 291 LITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMK 350
Query: 294 --------------QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM 339
+L KY EA+W G+ PS++EY S +SI + F +
Sbjct: 351 EKGVNVIPYLRQSWVDLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRV 410
Query: 340 GDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEE 399
D ++E + D++ + ++R DD+ E R P +++CY + + SE
Sbjct: 411 TDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTSVEEVSRGDVPKSLQCYMSDYNASEA 470
Query: 400 EAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMM 459
EA K + +A WK +N E + + + DL A MY + T ++
Sbjct: 471 EARKHVKWLIAEVWKKMNAERVSKDSPFGKDFIGCAVDLGRMAQLMYHNGDGHGTQHPII 530
Query: 460 KDQVELVLRDP 470
Q+ L +P
Sbjct: 531 HQQMTRTLFEP 541
>pdb|2J5C|A Chain A, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution.
pdb|2J5C|B Chain B, Rational Conversion Of Substrate And Product Specificity
In A Monoterpene Synthase. Structural Insights Into The
Molecular Basis Of Rapid Evolution
Length = 569
Score = 241 bits (615), Expect = 6e-64, Method: Compositional matrix adjust.
Identities = 162/496 (32%), Positives = 246/496 (49%), Gaps = 35/496 (7%)
Query: 1 MMASDADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD-DKDDIYIVSLCFRL 59
MM + ++L LID ++RLG++ HF +EI + L + + D+ D+Y +L FRL
Sbjct: 75 MMLQEEVDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRL 134
Query: 60 LRQHGIKMSCXXXX-XXXXXXXXXXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTT 118
LRQ+ +S SL +D G+L LYE + L+ GE+ L A F T
Sbjct: 135 LRQYDFSVSQEVFDCFKNAKGTDFKPSLVDDTRGLLQLYEASFLSAQGEETLRLARDFAT 194
Query: 119 THL-KSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAK 177
L K ++ + +N I +L +P V +R F+D Y R + T+L AK
Sbjct: 195 KFLQKRVLVDKDIN--LLSSIERALELPTHWRVQMPNARSFIDAYKRRPDMNPTVLELAK 252
Query: 178 LDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIF 237
LDFN++QA Q+E E +RWW + +LP++R+R+VE Y+W GV RI
Sbjct: 253 LDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIM 311
Query: 238 LSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLIDFQE-- 295
L+KI L T +DD FD YGT EEL++FT A+ RWDI + LP YM+ + L +F
Sbjct: 312 LTKINALVTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEM 371
Query: 296 ----------------------LVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAV 333
L+ Y EAKW +G+ PS++EY S SI +PI
Sbjct: 372 AYDTLRDKGFDSTPYLRKVWVGLIESYLIEAKWYYKGHKPSLEEYMKNSWISIGGIPILS 431
Query: 334 ASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQ 393
F + D E E DI+ A+ TI+R DD+ E +R P +V+CY N+
Sbjct: 432 HLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVERGDVPKSVQCYMNE 491
Query: 394 HGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRL 453
SEEEA + + + +WK++N+E++ ++ ++V +L+ A ++Y D
Sbjct: 492 KNASEEEAREHVRSLIDQTWKMMNKEMM--TSSFSKYFVEVSANLARMAQWIYQHESDGF 549
Query: 454 THSTMMKDQVELVLRD 469
M V +LRD
Sbjct: 550 ---GMQHSLVNKMLRD 562
>pdb|1N1B|A Chain A, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1B|B Chain B, Crystal Structure Of (+)-bornyl Diphosphate Synthase From
Sage
pdb|1N1Z|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N1Z|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Pyrophosphate
pdb|1N20|A Chain A, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N20|B Chain B, (+)-bornyl Diphosphate Synthase: Complex With Mg And
3-aza- 2,3-dihydrogeranyl Diphosphate
pdb|1N21|A Chain A, (+)-Bornyl Diphosphate Synthase: Cocrystal With Mg And 3-
Aza-2,3-Dihydrogeranyl Diphosphate
pdb|1N22|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N22|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (4r)-7-Aza-7,8-Dihydrolimonene
pdb|1N23|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N23|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg,
Pyrophosphate, And (1r,4s)-2-Azabornane
pdb|1N24|A Chain A, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
pdb|1N24|B Chain B, (+)-Bornyl Diphosphate Synthase: Complex With Mg And
Product
Length = 549
Score = 239 bits (610), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 160/484 (33%), Positives = 244/484 (50%), Gaps = 50/484 (10%)
Query: 8 KPAQKLCLIDVVQRLGVAYHFIKEIDDAL------EKISHDPFDDKDDIYIVSLCFRLLR 61
+P Q+L LI ++ LG++ F EI + L K H+ +K D+Y +L FRLLR
Sbjct: 53 EPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNEHKCFHNNEVEKMDLYFTALGFRLLR 112
Query: 62 QHGIKMSCXXXXXXXXXXXX-XXASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTH 120
QHG +S ASL D +GML LYE + L GED L+ A F T
Sbjct: 113 QHGFNISQDVFNCFKNEKGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKC 172
Query: 121 LKSMV--TNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDDLHDKTLLNFAKL 178
L+ + ++++ IRHSL +PL + +E+R+F+D Y+R + + AKL
Sbjct: 173 LQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEARWFIDAYARRPDMNPLIFELAKL 232
Query: 179 DFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPN-FSTGRIF 237
+FNI+QA HQ+E +++RWW L F +KLP++R+R+VE +FW VG+ +EP+ R
Sbjct: 233 NFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGM-FEPHQHGYQRKM 290
Query: 238 LSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIF---------- 287
+ II L T++DD +D YGT +EL++FT+ RWD I LP YM+ +
Sbjct: 291 AATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDA 350
Query: 288 -----------------KTLIDFQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLP 330
K+++D LV YF EAKW + GY PS+DEY +++ S+
Sbjct: 351 AYDILKEHGFFCLQYLRKSVVD---LVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPA 407
Query: 331 IAVAS-FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVEC 389
I + F F + + DI+ A I+R DD+ FE R P ++C
Sbjct: 408 IISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDDLGTSYFELARGDVPKTIQC 467
Query: 390 YKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLP--LLQVIFDLSCSADFMY- 446
Y + SEEEAV+ + + +WK +N + P P ++ ++ A F+Y
Sbjct: 468 YMKETNASEEEAVEHVKFLIREAWKDMNTAI---AAGYPFPDGMVAGAANIGRVAQFIYL 524
Query: 447 -GDA 449
GD
Sbjct: 525 HGDG 528
>pdb|3SAE|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDQ|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDR|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDT|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDU|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
pdb|3SDV|A Chain A, Structure Of A Three-Domain Sesquiterpene Synthase: A
Prospective Target For Advanced Biofuels Production
Length = 817
Score = 230 bits (586), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 153/522 (29%), Positives = 258/522 (49%), Gaps = 63/522 (12%)
Query: 11 QKLCLIDVVQRLGVAYHFIKEIDDALE---------KISHDPFDDKDDIYIVSLCFRLLR 61
++L ++D + RLG+ HF KEI +AL+ I + D+ +L FRLLR
Sbjct: 300 ERLLIVDNIVRLGIYRHFEKEIKEALDYVYRHWNERGIGWGRLNPIADLETTALGFRLLR 359
Query: 62 QHGIKMSCXXXXXXXXXXXXXXAS---LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTT 118
H +S S DV ML+LY + LA PGE+ILDEA F T
Sbjct: 360 LHRYNVSPAIFDNFKDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFAT 419
Query: 119 THLKSMVTNSQVNSTF------AEQIRHSLRVPLRRAVSRLESRYFLDIYSRDD------ 166
+L+ + S+ +S + +++I+++L+ +V R+E++ + +Y D
Sbjct: 420 KYLREALEKSETSSAWNNKQNLSQEIKYALKTSWHASVPRVEAKRYCQVYRPDYARIAKC 479
Query: 167 ------LHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFW 220
++++ L KLDFNI+Q++HQ+E +T W+RD L + RER +E YF
Sbjct: 480 VYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRD-SGLPLFTFARERPLEFYFL 538
Query: 221 MLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALP 280
+ G +YEP ++ R +K+ CL+T++DD +D YGT +ELK+FTEAV RWD+ + LP
Sbjct: 539 VAAG-TYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLP 597
Query: 281 EYMKFIFKTLID------------------------FQELVMKYFCEAKWLNEGYVPSMD 316
+YMK ++ D +++ ++ Y+ EA+WL YVP++D
Sbjct: 598 DYMKLCYQIYYDIVHEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLD 657
Query: 317 EYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAE---TIIRFLDDIA 372
EY + SI + ++ + M G + S+E E ++ P + E I R DD
Sbjct: 658 EYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE-KVDYPGRRVLTELNSLISRLADDTK 716
Query: 373 GHKFEQKREHNPSAVECYKNQHG-VSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPL 431
+K E+ R S++ECY H +EEEA+ + + + K + E L P +P
Sbjct: 717 TYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE-FLKPDDVPFAC 775
Query: 432 LQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL 473
+++F+ + ++ D +KD ++ L +P+ L
Sbjct: 776 KKMLFEETRVTMVIFKDGDGFGVSKLEVKDHIKECLIEPLPL 817
>pdb|3P5P|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3P5R|A Chain A, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
pdb|3P5R|B Chain B, Crystal Structure Of Taxadiene Synthase From Pacific Yew
(Taxus Brevifolia) In Complex With Mg2+ And
2-Fluorogeranylgeranyl Diphosphate
Length = 764
Score = 199 bits (507), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 135/514 (26%), Positives = 230/514 (44%), Gaps = 56/514 (10%)
Query: 11 QKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKD----------DIYIVSLCFRLL 60
++L L+D ++ LG+ HF +EI AL+ + + + ++ D+ +L R L
Sbjct: 248 ERLSLVDNIEHLGIGRHFKQEIKGALDYV-YRHWSERGIGWGRDSLVPDLNTTALGLRTL 306
Query: 61 RQHGIKMSCXXXXXXXXXXXXXXASLTN---DVEGMLSLYEVAHLAIPGEDILDEAIVFT 117
R HG +S +S ++ +++L+ + LA P E +D+A F
Sbjct: 307 RMHGYNVSSDVLNNFKDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFA 366
Query: 118 TTHLK-SMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD------------IYSR 164
+L+ ++ T N+ ++I + + P ++ RLE+R ++D +Y
Sbjct: 367 EPYLREALATKISTNTKLFKEIEYVVEYPWHMSIPRLEARSYIDSYDDNYVWQRKTLYRM 426
Query: 165 DDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVG 224
L + L AKLDFNI+Q++HQ+E +TRWW++ + + + R RV E+YF
Sbjct: 427 PSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKE-SGMADINFTRHRVAEVYF---SS 482
Query: 225 VSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMK 284
++EP +S RI +KI CL+ L DD D + T +ELK FTE V RWD + +PE M+
Sbjct: 483 ATFEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQ 542
Query: 285 FIFKTLIDFQELVMK------------------------YFCEAKWLNEGYVPSMDEYKS 320
FK E V Y E +WL GY+P+ +EY
Sbjct: 543 TCFKVWFKLMEEVNNDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLK 602
Query: 321 VSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKR 380
S+ P + + MG++ ++ E ++ R +D ++ E+ R
Sbjct: 603 TYAISVGLGPCTLQPILLMGELVKDDVVEKVHYPSNMFELVSLSWRLTNDTKTYQAEKAR 662
Query: 381 EHNPSAVECY-KNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLS 439
S + CY K+ G +EE+A+K + V + K + E IP+ IF+L
Sbjct: 663 GQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFEYFKPSNDIPMGCKSFIFNLR 722
Query: 440 CSADFMYGDAQDRLTHSTMMKDQVELVLRDPIKL 473
Y + +KD + V DPI++
Sbjct: 723 LCVQIFYKFIDGYGIANEEIKDYIRKVYIDPIQV 756
>pdb|3S9V|A Chain A, Abietadiene Synthase From Abies Grandis
pdb|3S9V|B Chain B, Abietadiene Synthase From Abies Grandis
pdb|3S9V|C Chain C, Abietadiene Synthase From Abies Grandis
pdb|3S9V|D Chain D, Abietadiene Synthase From Abies Grandis
Length = 785
Score = 197 bits (500), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/521 (27%), Positives = 252/521 (48%), Gaps = 68/521 (13%)
Query: 11 QKLCLIDVVQRLGVAYHFIKEIDDALEKI-SH-----------DPFDDKDDIYIVSLCFR 58
++L +D V+RLG+ HF +EI +AL+ + SH +P D DD ++ R
Sbjct: 272 ERLWAVDTVERLGIDRHFKEEIKEALDYVYSHWDERGIGWARENPVPDIDD---TAMGLR 328
Query: 59 LLRQHGIKMSCXXXXXXXXXXXXXXASLTNDVEG---MLSLYEVAHLAIPGEDILDEAIV 115
+LR HG +S L G ML++ +H++ PGE I++EA +
Sbjct: 329 ILRLHGYNVSSDVLKTFRDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKL 388
Query: 116 FTTTHLKSMVTNSQVNSTFA------EQIRHSLRVPLRRAVSRLESRYFLDIYSRDD--- 166
T +L++ + N +A ++ ++L+ P +++ RLE+R +++ Y DD
Sbjct: 389 CTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPWHKSMPRLEARSYIENYGPDDVWL 448
Query: 167 ---------LHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVEL 217
+ ++ L AKLDFN +Q++HQ E ++ RWW+ F L + RERV E+
Sbjct: 449 GKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERVTEI 507
Query: 218 YFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHID 277
YF +EP FS R +K ++DD +DA+G+ ++LK+FTE+V RWD+ +D
Sbjct: 508 YF-SPASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVD 566
Query: 278 ALPEYMKFIF-------------------KTLIDFQELVMK-----YFCEAKWLNEGYVP 313
+P+ MK F + ++ + + V K Y EA+W YVP
Sbjct: 567 QMPQQMKICFVGFYNTFNDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVP 626
Query: 314 SMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAG 373
S +EY + SI + + S +F G++ + E+ + R ++D
Sbjct: 627 SFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSKIDRESRFLQLMGLTGRLVNDTKT 686
Query: 374 HKFEQKREHNPSAVECYKNQH-GVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLL 432
++ E+ + SA++CY H +SEEEA++ + + N+ + +N E + N IP
Sbjct: 687 YQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNREFVNN--KIPDIYK 744
Query: 433 QVIFDLS--CSADFMYGDAQDRLTHSTMMKDQVELVLRDPI 471
+++F+ + +M GD L+H +K+ V+ L P+
Sbjct: 745 RLVFETARIMQLFYMQGDGLT-LSHDMEIKEHVKNCLFQPV 784
>pdb|3PYA|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
(S)-15-Aza-14,15-Dihydrogeranylgeranyl Thiolodiphosphate
pdb|3PYB|A Chain A, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|B Chain B, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
pdb|3PYB|C Chain C, Crystal Structure Of Ent-Copalyl Diphosphate Synthase From
Arabidopsis Thaliana In Complex With
13-Aza-13,14-Dihydrocopalyl Diphosphate
Length = 727
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 62/260 (23%), Positives = 116/260 (44%), Gaps = 32/260 (12%)
Query: 11 QKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDK---------DDIYIVSLCFRLLR 61
+ + ++D +QRLG++ +F +EI + L+ + D+ DI ++ FRLLR
Sbjct: 247 EHIWIVDRLQRLGISRYFEEEIKECLDYVHRYWTDNGICWARCSHVQDIDDTAMAFRLLR 306
Query: 62 QHGIKMSCXXXXXXXXXXXXX--XASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTT 119
QHG ++S V GM +LY + LA P E+IL A F+
Sbjct: 307 QHGYQVSADVFKNFEKEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYN 366
Query: 120 HL------KSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRDD------- 166
+L + ++ + +I +L +P ++ R+E+R+++D Y ++
Sbjct: 367 YLLEKREREELIDKWIIMKDLPGEIGFALEIPWYASLPRVETRFYIDQYGGENDVWIGKT 426
Query: 167 ------LHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFW 220
+++ L AK D+N QA HQ E +W+ + + L + R ++E Y+
Sbjct: 427 LYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEE-NRLSEWGVRRSELLECYY- 484
Query: 221 MLVGVSYEPNFSTGRIFLSK 240
+ +E S R+ +K
Sbjct: 485 LAAATIFESERSHERMVWAK 504
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.324 0.138 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,096,337
Number of Sequences: 62578
Number of extensions: 503677
Number of successful extensions: 1599
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1459
Number of HSP's gapped (non-prelim): 21
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 53 (25.0 bits)