Query 012005
Match_columns 473
No_of_seqs 195 out of 888
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:44:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012005.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012005hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g4d_A (+)-delta-cadinene synt 100.0 3E-152 1E-156 1218.1 41.2 463 6-473 67-554 (554)
2 3m00_A Aristolochene synthase; 100.0 3E-151 1E-155 1209.9 40.7 462 6-473 63-550 (550)
3 3n0f_A Isoprene synthase; terp 100.0 4E-151 2E-155 1210.7 37.7 462 6-472 60-551 (555)
4 2ong_A 4S-limonene synthase; m 100.0 3E-146 1E-150 1178.5 44.5 462 7-472 48-543 (543)
5 1n1b_A (+)-bornyl diphosphate 100.0 3E-146 9E-151 1178.6 37.9 463 6-472 51-549 (549)
6 2j5c_A 1,8-cineole synthase; t 100.0 4E-145 1E-149 1173.1 38.1 462 7-472 81-569 (569)
7 3p5p_A Taxadiene synthase; cla 100.0 2E-139 7E-144 1156.4 43.2 460 6-473 243-756 (764)
8 3s9v_A Abietadiene synthase, c 100.0 2E-139 8E-144 1158.6 42.5 461 6-472 267-785 (785)
9 3sdr_A Alpha-bisabolene syntha 100.0 2E-139 5E-144 1164.4 40.7 463 6-473 295-817 (817)
10 3pya_A ENT-copalyl diphosphate 100.0 2E-103 7E-108 861.4 30.4 407 6-472 242-720 (727)
11 1ps1_A Pentalenene synthase; a 100.0 6.3E-50 2.1E-54 406.5 16.6 238 184-431 15-277 (337)
12 1di1_A Aristolochene synthase; 100.0 2.5E-48 8.5E-53 388.1 16.6 225 186-419 13-263 (300)
13 3bny_A Aristolochene synthase; 100.0 5.9E-47 2E-51 382.0 17.2 227 184-419 25-277 (320)
14 3kb9_A EPI-isozizaene synthase 100.0 1.2E-44 4.1E-49 374.9 18.5 222 194-419 66-311 (382)
15 3v1v_A 2-MIB synthase, 2-methy 100.0 3.6E-32 1.2E-36 284.9 15.7 226 189-419 129-389 (433)
16 1yyq_A Trichodiene synthase; t 99.7 1E-17 3.4E-22 172.3 14.3 226 193-440 34-293 (374)
17 3acx_A Dehydrosqualene synthas 86.4 16 0.00054 35.4 15.0 183 234-432 39-244 (293)
18 4hd1_A Squalene synthase HPNC; 82.9 35 0.0012 32.9 16.8 177 234-432 40-239 (294)
19 3ipi_A Geranyltranstransferase 71.6 17 0.00058 35.5 9.5 133 293-440 136-277 (295)
20 3lmd_A Geranylgeranyl pyrophos 67.2 18 0.00061 36.4 8.8 79 293-376 169-247 (360)
21 1rtr_A Geranyltranstransferase 66.4 24 0.00084 34.3 9.5 112 294-418 148-271 (301)
22 3ts7_A Geranyltranstransferase 64.8 45 0.0015 32.9 11.1 110 294-416 158-280 (324)
23 3p8l_A Geranyltranstransferase 62.9 26 0.00089 34.3 8.9 112 294-419 156-280 (302)
24 4f62_A Geranyltranstransferase 61.4 24 0.00082 34.8 8.3 113 294-419 151-276 (317)
25 3p8r_A Geranyltranstransferase 60.4 27 0.00091 34.1 8.5 112 294-418 158-282 (302)
26 3lsn_A Geranyltranstransferase 57.2 24 0.00081 34.5 7.5 112 294-417 152-275 (304)
27 3rmg_A Octaprenyl-diphosphate 56.5 36 0.0012 33.7 8.7 80 293-376 142-221 (334)
28 3m0g_A Farnesyl diphosphate sy 56.2 22 0.00076 34.6 7.1 111 294-418 147-269 (297)
29 3pde_A Farnesyl-diphosphate sy 51.7 41 0.0014 32.9 8.2 111 294-418 155-278 (309)
30 3lom_A Geranyltranstransferase 50.6 40 0.0014 33.1 7.9 112 294-416 158-281 (313)
31 3uca_A Geranyltranstransferase 50.4 44 0.0015 33.0 8.2 113 294-419 180-305 (324)
32 2h8o_A Geranyltranstransferase 50.3 40 0.0014 33.4 7.9 111 294-418 192-315 (335)
33 3mzv_A Decaprenyl diphosphate 47.8 1.2E+02 0.004 30.0 10.9 78 293-375 148-226 (341)
34 3oyr_A Trans-isoprenyl diphosp 46.5 77 0.0026 31.4 9.3 79 293-376 160-239 (345)
35 1wy0_A Geranylgeranyl pyrophos 45.3 57 0.0019 32.2 8.2 77 293-375 146-224 (342)
36 1rqj_A Geranyltranstransferase 45.1 66 0.0023 31.1 8.5 114 294-419 152-277 (299)
37 3llw_A Geranyltranstransferase 41.1 51 0.0017 32.3 6.9 112 294-418 159-281 (311)
38 2ftz_A Geranyltranstransferase 39.4 87 0.003 30.1 8.2 113 293-419 143-265 (284)
39 3pko_A Geranylgeranyl pyrophos 37.5 1.2E+02 0.0042 29.7 9.2 95 293-393 152-258 (334)
40 3nf2_A Putative polyprenyl syn 33.8 3.5E+02 0.012 26.6 12.7 78 293-375 152-230 (352)
41 4dhd_A Polyprenyl synthetase; 31.9 97 0.0033 30.8 7.4 79 293-375 141-231 (358)
42 3npk_A Geranyltranstransferase 31.5 1.3E+02 0.0044 29.0 8.0 113 293-417 144-265 (291)
43 2qis_A Farnesyl pyrophosphate 28.8 4E+02 0.014 26.4 11.4 80 293-376 185-271 (374)
44 3fau_A NEDD4-binding protein 2 27.4 49 0.0017 25.4 3.4 24 394-417 6-29 (82)
45 2j1p_A Geranylgeranyl pyrophos 26.3 73 0.0025 30.8 5.2 109 294-417 160-271 (293)
46 3apz_A Geranyl diphosphate syn 25.1 1.3E+02 0.0045 29.6 7.0 80 293-376 162-241 (348)
47 1wmw_A Geranylgeranyl diphosph 24.2 4.1E+02 0.014 25.7 10.3 76 293-375 139-218 (330)
48 1uby_A FPS, farnesyl diphospha 23.9 3.6E+02 0.012 26.6 10.0 80 293-376 178-264 (367)
49 2ee7_A Sperm flagellar protein 23.9 74 0.0025 27.0 4.1 67 185-253 11-85 (127)
50 3kra_B Geranyl diphosphate syn 23.3 64 0.0022 30.9 4.1 71 294-371 149-221 (274)
51 2azj_A Geranylgeranyl pyrophos 20.3 2.6E+02 0.0089 26.7 7.8 108 293-418 144-258 (289)
No 1
>3g4d_A (+)-delta-cadinene synthase isozyme XC1; cyclase, lyase, magnesium, metal-binding; 2.40A {Gossypium arboreum} PDB: 3g4f_A*
Probab=100.00 E-value=3.1e-152 Score=1218.11 Aligned_cols=463 Identities=48% Similarity=0.867 Sum_probs=440.2
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcCcccchhhhccccccccccccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKAS 85 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g~f~~~ 85 (473)
+.|++++|+|||+||||||+|||++||+++|++||+++..+..||++|||+|||||||||+||||||++|+|++|+|+++
T Consensus 67 ~~~~~~~l~lID~lqrLGi~~hF~~EI~~~L~~i~~~~~~~~~dl~~~al~FRlLR~hGy~VS~dvf~~F~~~~g~F~~~ 146 (554)
T 3g4d_A 67 MANSTQKLAFIDSVQRLGVSYHFTKEIEDELENIYHNNNDAENDLYTTSIRFRLLREHGYNVSCDVFNKFKDEQGNFKSS 146 (554)
T ss_dssp CSSHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHSCCCTTCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSSBCHH
T ss_pred ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHhcCCCCChhHHhhhcccCCCcccc
Confidence 56899999999999999999999999999999999752222369999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHHHHHhcCC
Q 012005 86 LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSRD 165 (473)
Q Consensus 86 ~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~~ 165 (473)
+.+||+||||||||||+++|||+|||||+.||++||++.++ ++ +++|+++|+|||+.|||+++||+|||+||++|+++
T Consensus 147 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~~ 224 (554)
T 3g4d_A 147 VTSDVRGLLELYQASYLRVHGEDILDEAISFTTHHLSLAVA-SL-DHPLSEEVSHALKQSIRRGLPRVEARHYLSVYQDI 224 (554)
T ss_dssp HHHCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHST-TC-CTTHHHHHHHHHHCCTTTSCHHHHHHHHHHHHHSS
T ss_pred cccchHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHh-cc-CchHHHHHHHHhCCCccCCchHHHHHHHHHHhCcC
Confidence 99999999999999999999999999999999999999987 56 78899999999999999999999999999999999
Q ss_pred CCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHhHhhhh
Q 012005 166 DLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICLE 245 (473)
Q Consensus 166 ~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~ 245 (473)
+.+|+.||||||||||+||++||+||++++|||+++||.+++||||||++|||||+ +|++|||+||.+|+++||+++++
T Consensus 225 ~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~~L~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l~ 303 (554)
T 3g4d_A 225 ESHNKALLEFAKIDFNMLQFLHRKELSEICRWWKDLDFQRKLPYARDRVVEGYFWI-SGVYFEPQYSLGRKMLTKVIAMA 303 (554)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCcccCCchHHHHHHHHHHH-HHhhCCccccHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999889999999999999999 99999999999999999999999
Q ss_pred hhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHHHHHHH
Q 012005 246 TLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQELVMKYF 301 (473)
Q Consensus 246 ~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~~~a~l 301 (473)
+++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++ |++++++|+
T Consensus 304 tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~e~~~~~~~~~~~~~~~ylk~~w~~l~~ayl 383 (554)
T 3g4d_A 304 SIVDDTYDSYATYEELIPYTNAIERWDIKCIDEIPEYMKPSYKALLDVYEEMVQLVAEHGRQYRVEYAKNAMIRLAQSYL 383 (554)
T ss_dssp HHHHHHHTSSCCHHHHHHHHHHHHHCCGGGGGGSCGGGHHHHHHHHHHHHHHHHHHGGGTCTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999 999999999
Q ss_pred HHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccC
Q 012005 302 CEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKRE 381 (473)
Q Consensus 302 ~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G 381 (473)
+||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++|+++|
T Consensus 384 ~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~rG 463 (554)
T 3g4d_A 384 VEAKWTLQNYKPSFEEFKANALPTCGYAMLAITSFVGMGDIVTPETFKWAASDPKIIQASTIICRFMDDVAEHKFKHRRE 463 (554)
T ss_dssp HHHHHHHTTCCCCHHHHHHHHGGGSCHHHHHHHHHHTSCTTSCHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCC-----
T ss_pred HHHHHHhcCCCCCHHHHHhccceeehHHHHHHHHHHhcCCCCCHHHHHhccccHHHHHHHHHHHHHhcccchhhhhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhHH
Q 012005 382 HNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMMK 460 (473)
Q Consensus 382 ~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~k 460 (473)
+++|+|+|||+|+|+|+|+|+++++++|+++||+||++ +++++++|++|+++++|+||++++||+++ ||||.| +.||
T Consensus 464 ~van~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e-~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~-Dg~t~~~~~~k 541 (554)
T 3g4d_A 464 DDCSAIECYMEEYGVTAQEAYDVFNKHVESAWKDLNQE-FLKPTEMPTEVLNRSLNLARVMDVLYREG-DGYTYVGKAAK 541 (554)
T ss_dssp -CCCHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HSSSCSSCHHHHHHHHHHHHHHHHHSCC------CCCHHHH
T ss_pred CccHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCccHHHH
Confidence 99999999999999999999999999999999999999 99988999999999999999999999999 999999 7899
Q ss_pred HHHHHHhcCccCC
Q 012005 461 DQVELVLRDPIKL 473 (473)
Q Consensus 461 ~~i~sll~~Pi~i 473 (473)
++|++||++|||+
T Consensus 542 ~~i~~ll~~Pi~l 554 (554)
T 3g4d_A 542 GGITSLLIEPIAL 554 (554)
T ss_dssp HHHHHHHTCCCCC
T ss_pred HHHHHHhcCCCCC
Confidence 9999999999986
No 2
>3m00_A Aristolochene synthase; plant terpenoid cyclase, lyase binding domain, (2-CIS, 6-trans)-2-fluorofarnesyl diphospha magnesium, metal-binding; HET: 2CF; 2.10A {Nicotiana tabacum} PDB: 3lz9_A* 3m02_A* 3m01_A* 5eau_A* 1hxa_A* 1hx9_A* 1hxc_A* 5eas_A 1hxg_A 4di5_A* 5eat_A*
Probab=100.00 E-value=2.8e-151 Score=1209.85 Aligned_cols=462 Identities=42% Similarity=0.783 Sum_probs=444.5
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcCcccchhhhccccccccccccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDGKFKAS 85 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g~f~~~ 85 (473)
+.++.++|+|||+||||||+|||++||+++|++||++ |....||++|||+|||||||||+||||||++|+|++|+|+++
T Consensus 63 ~~~~~~~L~lID~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~dl~~~al~FRLLR~hGy~VS~dvf~~F~~~~G~F~~~ 141 (550)
T 3m00_A 63 GMKLADTLNLIDTIERLGISYHFEKEIDDILDQIYNQ-NSNCNDLCTSALQFRLLRQHGFNISPEIFSKFQDENGKFKES 141 (550)
T ss_dssp SCCHHHHHHHHHHHHHTTCGGGCHHHHHHHHHHHHHH-CCCCSSHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTSCBCGG
T ss_pred ccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHHh-cccCCCHHHHHHHHHHHHhcCCCCChHHhhhccccCCCcccc
Confidence 5689999999999999999999999999999999986 443579999999999999999999999999999999999999
Q ss_pred ccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHHHH-HhcC
Q 012005 86 LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD-IYSR 164 (473)
Q Consensus 86 ~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~-~y~~ 164 (473)
+.+|++||||||||||+++|||+|||||+.||++||++.++ ++ +++|+++|+|||+.|+|+++||+|||+||+ +|++
T Consensus 142 l~~d~~glL~LYeAs~l~~~gE~iLdeA~~fs~~~L~~~~~-~~-~~~l~~~V~~aL~~P~~~~l~rlear~yI~~~Y~~ 219 (550)
T 3m00_A 142 LASDVLGLLNLYEASHVRTHADDILEDALAFSTIHLESAAP-HL-KSPLREQVTHALEQCLHKGVPRVETRFFISSIYDK 219 (550)
T ss_dssp GGGCHHHHHHHHHHHTTCCTTCGGGTTHHHHHHHHHHHHGG-GC-CTTHHHHHHHHHHSCSTTSCHHHHHHHHHHHTGGG
T ss_pred chhchHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHh-cc-CccHHHHHHHHhCCCccCCchHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999986 56 778999999999999999999999999999 9999
Q ss_pred CCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHhHhhh
Q 012005 165 DDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICL 244 (473)
Q Consensus 165 ~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l 244 (473)
++.+|++||||||||||+||++||+||++++|||+++||.+++||||||++|||||+ +|++|||+||.+|+++||++++
T Consensus 220 ~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwk~~~l~~~l~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK~~~l 298 (550)
T 3m00_A 220 EQSKNNVLLRFAKLDFNLLQMLHKQELAQVSRWWKDLDFVTTLPYARDRVVECYFWT-LGVYFEPQYSQARVMLVKTISM 298 (550)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTHHHHSTTSCCCHHHHHHHH-HHHCCSGGGHHHHHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCccccCcHHHhHHHHHHHH-HHhhCCccchHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999889999999999999999 9999999999999999999999
Q ss_pred hhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHHHHHH
Q 012005 245 ETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQELVMKY 300 (473)
Q Consensus 245 ~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~~~a~ 300 (473)
++++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++ |+++++||
T Consensus 299 ~tviDD~yD~ygTleEl~~ft~ai~RWD~~~~~~LPeymK~~f~al~~~~~E~~~~~~~~~~~~~~~ylk~~w~~l~~ay 378 (550)
T 3m00_A 299 ISIVDDTFDAYGTVKELEAYTDAIQRWDINEIDRLPDYMKISYKAILDLYKDYEKELSSAGRSHIVCHAIERMKEIVRNY 378 (550)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHCCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHTTTCGGGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhcc
Q 012005 301 FCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKR 380 (473)
Q Consensus 301 l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~ 380 (473)
++||+|+++||+||+||||+||++|+|++++++++++|+ +.+|+++++|+.++|+|+++++.|+||+|||+||++|+++
T Consensus 379 l~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~f~g~-~~lt~e~~e~~~~~p~i~~~~~~I~RL~NDI~S~k~E~~r 457 (550)
T 3m00_A 379 NVESTWFIEGYTPPVSEYLSNALATTTYYLLATTSYLGM-KSATEQDFEWLSKNPKILEASVIICRVIDDTATYEVEKSR 457 (550)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHTGGGSHHHHHHHHHHTC-TTCCHHHHHHHHTCCHHHHHHHHHHHHHHHHHSHHHHHHT
T ss_pred HHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHcC-CCCcHHHHHhhcccHHHHHHHhhhheeeccchhHHHHHhc
Confidence 999999999999999999999999999999999998887 6799999999999999999999999999999999999999
Q ss_pred CCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhH
Q 012005 381 EHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMM 459 (473)
Q Consensus 381 G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~ 459 (473)
|+++|+|+|||+|+|+|+|+|++++++||+++||+||++ +++++++|++|+++++|+||++++||++|+||||.| +.|
T Consensus 458 G~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e-~l~~~~~p~~~~~~~~NlaR~~~~~Y~~~~Dg~t~~~~~~ 536 (550)
T 3m00_A 458 GQIATGIECCMRDYGISTKEAMAKFQNMAETAWKDINEG-LLRPTPVSTEFLTPILNLARIIEVTYIHNLDGYTHPEKVL 536 (550)
T ss_dssp TCTTSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-TSSSCSSCGGGTHHHHHHHHHHHHHTSCC-----CCHHHH
T ss_pred CCcccHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHhCCCCCCCCCccHHH
Confidence 999999999999999999999999999999999999999 999889999999999999999999999855999999 589
Q ss_pred HHHHHHHhcCccCC
Q 012005 460 KDQVELVLRDPIKL 473 (473)
Q Consensus 460 k~~i~sll~~Pi~i 473 (473)
|++|++||++|||+
T Consensus 537 k~~i~~ll~~Pi~~ 550 (550)
T 3m00_A 537 KPHIINLLVDSIKI 550 (550)
T ss_dssp HHHHHHHHTCCCCC
T ss_pred HHHHHHHhhCCCCC
Confidence 99999999999986
No 3
>3n0f_A Isoprene synthase; terpene cyclase fold, hemiterpene synthase, DDXXD motif, NSE motif, lyase; 2.70A {Populus tremula x populus alba} PDB: 3n0g_A*
Probab=100.00 E-value=4.5e-151 Score=1210.65 Aligned_cols=462 Identities=34% Similarity=0.635 Sum_probs=445.2
Q ss_pred CC-CcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcC----CCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccc
Q 012005 6 AD-KPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHD----PFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDG 80 (473)
Q Consensus 6 ~~-~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~----~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g 80 (473)
+. +++++|+|||+||||||+|||++||+++|++||+. .| ...||++|||+|||||||||+||||||++|+|++|
T Consensus 60 ~~~~~~~~L~lID~lqRLGi~~hF~~EI~~~L~~i~~~~~~~~~-~~~DL~~~Al~FRLLR~hGy~VS~dvF~~F~d~~G 138 (555)
T 3n0f_A 60 EKAEFLTLLELIDNVQRLGLGYRFESDIRRALDRFVSSGGFDGV-TKTSLHATALSFRLLRQHGFEVSQEAFSGFKDQNG 138 (555)
T ss_dssp TTSCHHHHHHHHHHHHHTTCGGGSHHHHHHHHHHHHHTCHHHHH-TTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCTTS
T ss_pred cccCHHHHHHHHHHHHHcCchhhhHHHHHHHHHHHHhhcccccc-ccCCHHHHHHHHHHHHhcCCCcChHHHhcccccCc
Confidence 44 78999999999999999999999999999999974 12 24699999999999999999999999999999999
Q ss_pred cccccccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHHHH
Q 012005 81 KFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLD 160 (473)
Q Consensus 81 ~f~~~~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~ 160 (473)
+|++++.+||+||||||||||+++|||+|||||++||++||++.+.+++ +++|+++|+|||+.|||+++||||||+||+
T Consensus 139 ~F~~~l~~dv~glL~LYeAs~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~-~~~l~~~V~~aL~~P~~~~l~Rlear~yI~ 217 (555)
T 3n0f_A 139 NFLENLKEDTKAILSLYEASFLALEGENILDEARVFAISHLKELSEEKI-GKELAEQVNHALELPLHRRTQRLEAVWSIE 217 (555)
T ss_dssp CBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHTCCHHHH-CHHHHHHHHHHHHSCTTTSCHHHHHHHHHH
T ss_pred cchhhhhhhhHHHHHHHHHHhcccCCcHHHHHHHHHHHHHHHHHHhccC-CchHHHHHHHHhcCCcccCchHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999765334 678999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHh
Q 012005 161 IYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSK 240 (473)
Q Consensus 161 ~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak 240 (473)
+|++++.+|++||||||||||+||++||+||++++|||+++||++++||||||++|||||+ +|++|||++|.+|+++||
T Consensus 218 ~Y~~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l~~~l~faRdr~ve~yfw~-~~~~feP~~s~~R~~~aK 296 (555)
T 3n0f_A 218 AYRKKEDANQVLLELAILDYNMIQSVYQRDLRETSRWWRRVGLATKLHFARDRLIESFYWA-VGVAFEPQYSDCRNSVAK 296 (555)
T ss_dssp HHTTCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCTTCCCCHHHHHHHH-HHHCCSGGGHHHHHHHHH
T ss_pred HhcccccccHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHHcCCcccCCchhhHHHHHHHHH-HHhhcCccchHHHHHHHH
Confidence 9999999999999999999999999999999999999999999889999999999999999 999999999999999999
Q ss_pred HhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHH
Q 012005 241 IICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQEL 296 (473)
Q Consensus 241 ~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~ 296 (473)
++++++++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++ |+++
T Consensus 297 ~~~l~tviDD~yD~ygt~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~~e~~~~~~~~~g~~~~~~l~~~w~~l 376 (555)
T 3n0f_A 297 MFSFVTIIDDIYDVYGTLDELELFTDAVERWDVNAINDLPDYMKLCFLALYNTINEIAYDNLKDKGENILPYLTKAWADL 376 (555)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCHHHHHHHHHHHHhcCccccccCcHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999 9999
Q ss_pred HHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhh
Q 012005 297 VMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKF 376 (473)
Q Consensus 297 ~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~k 376 (473)
++||++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|++++|+|+++++.|+||+|||+||++
T Consensus 377 ~~ayl~EAkW~~~gyvPT~EEYl~na~vSsg~~~l~~~~~~~mg~~lt~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~~~ 456 (555)
T 3n0f_A 377 CNAFLQEAKWLYNKSTPTFDDYFGNAWKSSSGPLQLIFAYFAVVQNIKKEEIENLQKYHDIISRPSHIFRLCNDLASASA 456 (555)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSHHHHHHHHHHHHCSSCCHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHhcccchhHHHHHHHHHHhcCCCCCHHHHHhcccchHHHHHHHHHHHHhccchhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc
Q 012005 377 EQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS 456 (473)
Q Consensus 377 E~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~ 456 (473)
|+++|+++|+|+|||+|+|+|+|+|++++++||+++||+||++ +++++++|++|+++++|+||++++||+++ ||||.|
T Consensus 457 E~~rG~vas~V~cYMke~GvSeEeA~~~i~~~Ie~~wK~lN~e-~l~~~~~p~~~~~~~~n~aR~~~~~Y~~~-Dg~t~~ 534 (555)
T 3n0f_A 457 EIARGETANSVSCYMRTKGISEELATESVMNLIDETWKKMNKE-KLGGSLFAKPFVETAINLARQSHCTYHNG-DAHTSP 534 (555)
T ss_dssp HHTTTCCCSHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHH-HHSCCSSCHHHHHHHHHHHHHHHHHSCCC----CCH
T ss_pred hhhcCCcchHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHHHHHHhcCC-CCCCCc
Confidence 9999999999999999999999999999999999999999999 99988999999999999999999999999 999999
Q ss_pred -hhHHHHHHHHhcCccC
Q 012005 457 -TMMKDQVELVLRDPIK 472 (473)
Q Consensus 457 -~~~k~~i~sll~~Pi~ 472 (473)
+.||++|++||++|||
T Consensus 535 ~~~~k~~i~~ll~~Pi~ 551 (555)
T 3n0f_A 535 DELTRKRVLSVITEPIL 551 (555)
T ss_dssp HHHHHHHHHHHTTSCCC
T ss_pred cHHHHHHHHHHHhcCCC
Confidence 6899999999999997
No 4
>2ong_A 4S-limonene synthase; monoterpene synthase, monoterpene cyclase, geranyl diphosphate, 2 fluorogeranyl diphosphate linalyl diphosphate; HET: FPG BTB; 2.70A {Mentha spicata} PDB: 2onh_A*
Probab=100.00 E-value=3.1e-146 Score=1178.52 Aligned_cols=462 Identities=34% Similarity=0.604 Sum_probs=448.2
Q ss_pred CCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCC-------C-CCChHHHHHHHHHHHhcCcccchhhhcccccc
Q 012005 7 DKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD-------D-KDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDD 78 (473)
Q Consensus 7 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~-------~-~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~ 78 (473)
.|++++|+|||+||||||+|||++||+++|++||+. +. . ..||++|||+|||||||||+||||||++|||+
T Consensus 48 ~d~~~~l~liD~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~~~~~~~~~dl~~~al~FRlLR~hGy~vs~dvf~~Fk~~ 126 (543)
T 2ong_A 48 TDQIRQLELIDDLQRMGLSDHFQNEFKEILSSIYLD-HHYYKNPFPKEERDLYSTSLAFRLLREHGFQVAQEVFDSFKNE 126 (543)
T ss_dssp CCHHHHHHHHHHHHHTTGGGTTHHHHHHHHHHHHHT-TTCCCSSCCCCCCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred cCHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHh-hcccccccccccCCHHHHHHHHHHHHHcCCCccHHHHhcccCC
Confidence 478999999999999999999999999999999976 22 1 46999999999999999999999999999999
Q ss_pred cccccccccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHH
Q 012005 79 DGKFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYF 158 (473)
Q Consensus 79 ~g~f~~~~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~y 158 (473)
+|+|++++++||+||||||||||+++|||+|||||+.||++||++++.+.+++++|+++|+|||++|||+++||||||+|
T Consensus 127 ~g~F~~~l~~d~~glL~Ly~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlear~y 206 (543)
T 2ong_A 127 EGEFKESLSDDTRGLLQLYEASFLLTEGETTLESAREFATKFLEEKVNEGGVDGDLLTRIAYSLDIPLHWRIKRPNAPVW 206 (543)
T ss_dssp TSSBCTTGGGCHHHHHHHHHHHTTCCSSCHHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHSCTTTSCSTTTHHHH
T ss_pred CCCccchhhhccHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHhhhHhccchHHHHHHH
Confidence 99999999999999999999999999999999999999999999998732436789999999999999999999999999
Q ss_pred HHHhcCCCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHH
Q 012005 159 LDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFL 238 (473)
Q Consensus 159 i~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ 238 (473)
|++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||+ +|++|||++|.+|+++
T Consensus 207 I~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwk~~~l~~kl~faRdR~ve~Yfw~-~a~~feP~~s~~Rl~~ 285 (543)
T 2ong_A 207 IEWYRKRPDMNPVVLELAILDLNIVQAQFQEELKESFRWWRNTGFVEKLPFARDRLVECYFWN-TGIIEPRQHASARIMM 285 (543)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSCSSCCCHHHHHHTH-HHHTCSTTCHHHHHHH
T ss_pred HHHhccCccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCcccccHHHHHHHHHHHHH-HHhccCCCccHHHHHH
Confidence 999999999999999999999999999999999999999999999878999999999999999 9999999999999999
Q ss_pred HhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HH
Q 012005 239 SKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQ 294 (473)
Q Consensus 239 ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~ 294 (473)
||+++|+|++||+||+|||++|++.||+||+|||+++++.+|+|||++|.++++ |+
T Consensus 286 aK~~~litviDD~fD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~ 365 (543)
T 2ong_A 286 GKVNALITVIDDIYDVYGTLEELEQFTDLIRRWDINSIDQLPDYMQLCFLALNNFVDDTSYDVMKEKGVNVIPYLRQSWV 365 (543)
T ss_dssp HHHHHHHHHHHHHHHSSSCHHHHHHHHHHHHTTCSSTTTTSCSHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999998 99
Q ss_pred HHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccch
Q 012005 295 ELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGH 374 (473)
Q Consensus 295 ~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~ 374 (473)
+++++|++||+|+.+||+||+||||++|++|+|+++++++++++||+.+|+++++|+.++|+++++++.++||+|||+||
T Consensus 366 ~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~~t~e~~e~~~~~p~i~~~~~~i~RL~NDi~S~ 445 (543)
T 2ong_A 366 DLADKYMVEARWFYGGHKPSLEEYLENSWQSISGPCMLTHIFFRVTDSFTKETVDSLYKYHDLVRWSSFVLRLADDLGTS 445 (543)
T ss_dssp HHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHHHSSCCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhcccHHHHHHHHHHHHHhcccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcc-cCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCC
Q 012005 375 KFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELL-LNPTAIPLPLLQVIFDLSCSADFMYGDAQDRL 453 (473)
Q Consensus 375 ~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~-l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~ 453 (473)
++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++ + ++++++|++|+++++|+||+++++|+++ |||
T Consensus 446 ~~E~~rG~~~n~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e-~~l~~~~vp~~~~~~~~n~aR~~~~~Y~~~-D~~ 523 (543)
T 2ong_A 446 VEEVSRGDVPKSLQCYMSDYNASEAEARKHVKWLIAEVWKKMNAE-RVSKDSPFGKDFIGCAVDLGRMAQLMYHNG-DGH 523 (543)
T ss_dssp HHHHHTSCCCCHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHH-HTCSSCSSCHHHHHHHHHHHHHHHHHTSSC-STT
T ss_pred hhccccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-hccCCCCCCHHHHHHHHHHHHeehhheeCC-CCC
Confidence 999999999999999999999999999999999999999999999 9 9988999999999999999999999999 999
Q ss_pred CCc-hhHHHHHHHHhcCccC
Q 012005 454 THS-TMMKDQVELVLRDPIK 472 (473)
Q Consensus 454 t~~-~~~k~~i~sll~~Pi~ 472 (473)
|.| +.||++|++||++|||
T Consensus 524 t~~~~~~k~~i~~l~~~pi~ 543 (543)
T 2ong_A 524 GTQHPIIHQQMTRTLFEPFA 543 (543)
T ss_dssp SSSCTTHHHHHHHHHTSCC-
T ss_pred CCccHHHHHHHHHHhccCCC
Confidence 999 7899999999999997
No 5
>1n1b_A (+)-bornyl diphosphate synthase; terpene synthase fold, isomerase; 2.00A {Salvia officinalis} SCOP: a.102.4.1 a.128.1.3 PDB: 1n1z_A* 1n20_A* 1n21_A* 1n22_A* 1n23_A* 1n24_A*
Probab=100.00 E-value=2.8e-146 Score=1178.59 Aligned_cols=463 Identities=35% Similarity=0.632 Sum_probs=435.4
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCC----CC---CCChHHHHHHHHHHHhcCcccchhhhcccccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPF----DD---KDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDD 78 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~----~~---~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~ 78 (473)
+.|++++|+|||+||||||+|||++||+++|++||+. + .. ..||++|||+|||||||||+||||||++|||+
T Consensus 51 ~~d~~~~l~lvD~lqrLGi~~hF~~EI~~~L~~i~~~-~~~~~~~~~~~~dl~~~al~FRlLR~hGy~Vs~dvf~~Fk~~ 129 (549)
T 1n1b_A 51 KMEPVQQLELIHDLKYLGLSDFFQDEIKEILGVIYNE-HKCFHNNEVEKMDLYFTALGFRLLRQHGFNISQDVFNCFKNE 129 (549)
T ss_dssp CCCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHH-CHHHHHCCCCSCCHHHHHHHHHHHHHTTCCCCGGGGGGGBCT
T ss_pred ccCHHHHHHhHHHHHhCCchhhhHHHHHHHHHHHHhh-hccccccccccCChhhchhhhhHHHhcCCCcCHHHHhhccCC
Confidence 3489999999999999999999999999999999975 2 11 36999999999999999999999999999999
Q ss_pred cc-cccccccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcC--CCCCchHHHHHHhcCCCcccccchhhH
Q 012005 79 DG-KFKASLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNS--QVNSTFAEQIRHSLRVPLRRAVSRLES 155 (473)
Q Consensus 79 ~g-~f~~~~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~--~~~~~l~~~V~~aL~~P~~~~~~rlea 155 (473)
+| +|++++++||+||||||||||+++|||+|||||++||++||++++.+. +++++|+++|+|||+.|||+++|||||
T Consensus 130 ~g~~F~~~l~~d~~glL~LY~As~l~~~gE~iL~eA~~Ft~~~L~~~~~~~~~~~~~~l~~~V~~aL~~P~~~~l~rlea 209 (549)
T 1n1b_A 130 KGIDFKASLAQDTKGMLQLYEASFLLRKGEDTLELAREFATKCLQKKLDEGGNEIDENLLLWIRHSLDLPLHWRIQSVEA 209 (549)
T ss_dssp TSSSBCGGGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHTC------CHHHHHHHHHHHHSCGGGCCTTTSH
T ss_pred CCCccchhhhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhcccccCCCcHHHHHHHHhcCchhcCchHHHH
Confidence 99 999999999999999999999999999999999999999999998631 336789999999999999999999999
Q ss_pred HHHHHHhcCCCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchh
Q 012005 156 RYFLDIYSRDDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGR 235 (473)
Q Consensus 156 r~yi~~y~~~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~R 235 (473)
|+||++|++++++|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||+ +|++|||++|.+|
T Consensus 210 r~yI~~Y~~~~~~n~~lLelAkldFn~~Q~~hq~El~~l~rWwke~~l~~kl~faRdR~ve~Yfw~-~a~~feP~~s~~R 288 (549)
T 1n1b_A 210 RWFIDAYARRPDMNPLIFELAKLNFNIIQATHQQELKDLSRWWSRLCFPEKLPFVRDRLVESFFWA-VGMFEPHQHGYQR 288 (549)
T ss_dssp HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCTTSCCCHHHHHHHH-HHHCCSTTCHHHH
T ss_pred HHHHHHhcccccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhCCcccccHHHHHHHHHHHHH-HHHhcCCCCcHHH
Confidence 999999999999999999999999999999999999999999999999877999999999999999 9999999999999
Q ss_pred HHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH-----------------------
Q 012005 236 IFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID----------------------- 292 (473)
Q Consensus 236 l~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~----------------------- 292 (473)
+++||+++|+|++||+||+|||++|++.||+||+|||+++++.+|+|||++|.++++
T Consensus 289 l~~aK~~~l~tviDD~yD~~gt~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~d~~~ei~~~~~~~~~~~~~~~l~~ 368 (549)
T 1n1b_A 289 KMAATIIVLATVIDDIYDVYGTLDELELFTDTFKRWDTESITRLPYYMQLCYWGVHNYISDAAYDILKEHGFFCLQYLRK 368 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCSSGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHhcCccccccCccHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999998
Q ss_pred -HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHH-HhhcccchHHHHHHHHHHHHhcC
Q 012005 293 -FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREI-FEWEMSNPDIIIAAETIIRFLDD 370 (473)
Q Consensus 293 -w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~-~e~~~~~~~l~~~~~~i~RL~ND 370 (473)
|++++++|++||+|+.+||+||+||||++|++|+|+++++++++++||+.+|+++ ++|+.++|+++++++.++||+||
T Consensus 369 ~w~~l~~ayl~EAkW~~~g~vPt~eEYl~~~~vS~g~~~l~~~~~~~~g~~lt~e~~~e~~~~~p~i~~~~~~i~RL~ND 448 (549)
T 1n1b_A 369 SVVDLVEAYFHEAKWYHSGYTPSLDEYLNIAKISVASPAIISPTYFTFANASHDTAVIDSLYQYHDILCLAGIILRLPDD 448 (549)
T ss_dssp HHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTCHHHHHHHHHTTSTTCCCCHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHhcccchhHHHHHHHHHHHcCCCCcHHHHHhhhcccHHHHHHHHHHHHHhcc
Confidence 9999999999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred ccchhhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCC
Q 012005 371 IAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQ 450 (473)
Q Consensus 371 I~S~~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~ 450 (473)
|+||++|+++|+++|+|+|||+|+|+|+|+|+++++++|+++||++|++ +++|+++|++|+++++|++|++++||+++
T Consensus 449 i~S~~~E~~rG~v~n~V~cyMke~g~s~eeA~~~i~~~i~~~wk~ln~e-~l~~~~vp~~~~~~~~n~~R~~~~~Y~~~- 526 (549)
T 1n1b_A 449 LGTSYFELARGDVPKTIQCYMKETNASEEEAVEHVKFLIREAWKDMNTA-IAAGYPFPDGMVAGAANIGRVAQFIYLHG- 526 (549)
T ss_dssp HC---------CCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHH-HHTCCSSCHHHHHHHHHHHHHHHHHTTTS-
T ss_pred cchhhhhhccCCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCHHHHHHHHHHHHeeehheeCC-
Confidence 9999999999999999999999999999999999999999999999999 99988999999999999999999999999
Q ss_pred CCCCCc-hhHHHHHHHHhcCccC
Q 012005 451 DRLTHS-TMMKDQVELVLRDPIK 472 (473)
Q Consensus 451 D~~t~~-~~~k~~i~sll~~Pi~ 472 (473)
||||.| +.||++|++||++|||
T Consensus 527 Dg~t~~~~~~k~~i~~l~~~pi~ 549 (549)
T 1n1b_A 527 DGFGVQHSKTYEHIAGLLFEPYA 549 (549)
T ss_dssp CCC----CHHHHHHHHHHTSCCC
T ss_pred CCCCCCcHHHHHHHHHHhcCCCC
Confidence 999999 6899999999999997
No 6
>2j5c_A 1,8-cineole synthase; terpene synthases, 1, monoterpene, lyase; 1.95A {Salvia fruticosa}
Probab=100.00 E-value=3.8e-145 Score=1173.12 Aligned_cols=462 Identities=35% Similarity=0.595 Sum_probs=427.1
Q ss_pred CCcccchhhhHHHhhcCCccCcHHHHHHHHHHhh-cCCCCCCCChHHHHHHHHHHHhcCcccchhhhcccccccc-cccc
Q 012005 7 DKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKIS-HDPFDDKDDIYIVSLCFRLLRQHGIKMSCDVFEKFKDDDG-KFKA 84 (473)
Q Consensus 7 ~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~-~~~~~~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F~d~~g-~f~~ 84 (473)
.|++++|+|||+||||||+|||++||+++|++|| +.......||++|||+|||||||||+||||||++|||++| +|++
T Consensus 81 ~d~~~~l~lID~lqrLGi~~hFe~EI~~~L~~i~~~~~~~~~~Dl~~~al~FRlLR~hGy~Vs~dvF~~Fkd~~G~~F~~ 160 (569)
T 2j5c_A 81 VDSIRRLELIDDLRRLGISCHFEREIVEILNSKYYTNNEIDERDLYSTALRFRLLRQYDFSVSQEVFDCFKNAKGTDFKP 160 (569)
T ss_dssp CCHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTSSCCSCTTCHHHHHHHHHHHHHTTCCCCGGGGGGGBCSSSSSBCG
T ss_pred ccHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHhccCcccCChhhhhHHhHHHHhcCCCcCHHHHhcccCCCCCcccc
Confidence 4789999999999999999999999999999999 7521134699999999999999999999999999999999 9999
Q ss_pred cccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhcCCCCCchHHHHHHhcCCCcccccchhhHHHHHHHhcC
Q 012005 85 SLTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTNSQVNSTFAEQIRHSLRVPLRRAVSRLESRYFLDIYSR 164 (473)
Q Consensus 85 ~~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~~~~~~~l~~~V~~aL~~P~~~~~~rlear~yi~~y~~ 164 (473)
++++||+||||||||||+++|||+|||||+.||++||++++. ++++++|+++|+|||+.|||+++||||||+||++|++
T Consensus 161 ~l~~dv~glL~LY~As~l~~~gE~iLdeA~~Ft~~~L~~~~~-~~~~~~l~~~V~~aL~~P~~~~l~rlear~yI~~Y~~ 239 (569)
T 2j5c_A 161 SLVDDTRGLLQLYEASFLSAQGEETLRLARDFATKFLQKRVL-VDKDINLLSSIERALELPTHWRVQMPNARSFIDAYKR 239 (569)
T ss_dssp GGGGCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHTTSSCC-----CHHHHHHHHHHHHSCGGGCCSHHHHHHHHHHHTT
T ss_pred chhhccHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHh-hcCCCcHHHHHHHHhcCccccCcHHHHHHHHHHHhcc
Confidence 999999999999999999999999999999999999999986 4436789999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhHHHHhHhhh
Q 012005 165 DDLHDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRIFLSKIICL 244 (473)
Q Consensus 165 ~~~~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l 244 (473)
++.+|++||||||||||+||++||+||++++|||+++||.+++||+|||+++||||+ +|++|||++|.+|+++||+++|
T Consensus 240 ~~~~n~~lLelAkldFn~~Q~~hq~EL~~l~rWwke~~L~~kl~faRdR~ve~Yfw~-~a~~feP~~S~~Rl~~aK~~~l 318 (569)
T 2j5c_A 240 RPDMNPTVLELAKLDFNMVQAQFQQELKEASRWWNSTGLVHELPFVRDRIVECYYWT-TGVVERRQHGYERIMLTKINAL 318 (569)
T ss_dssp CTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHCC--CCCHHHHHHHH-HHHCCCGGGHHHHHHHHHHHHH
T ss_pred CccccHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHH-HHhhcCCCccHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999878999999999999999 9999999999999999999999
Q ss_pred hhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------------------------HHHHHHHH
Q 012005 245 ETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------------------------FQELVMKY 300 (473)
Q Consensus 245 ~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------------------------w~~~~~a~ 300 (473)
+|++||+||+|||++|++.||+||+|||+++++.+|+|||++|.++++ |++++++|
T Consensus 319 itviDD~fD~ygT~eEl~~ft~ai~rWD~~~~~~lPeymk~~~~aL~~~~~ei~~~~~~~~~~~~~~~l~~~w~~l~~ay 398 (569)
T 2j5c_A 319 VTTIDDVFDIYGTLEELQLFTTAIQRWDIESMKQLPPYMQICYLALFNFVNEMAYDTLRDKGFDSTPYLRKVWVGLIESY 398 (569)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHTSSGGGGGSCHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHcCccccccCCchhHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998 99999999
Q ss_pred HHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhcc
Q 012005 301 FCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKR 380 (473)
Q Consensus 301 l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~ 380 (473)
++||+|+.+||+||+||||++|++|+|+++++++++++||+.+|+++++|+.++|+++++++.|+||+|||+||++|+++
T Consensus 399 l~EAkW~~~g~vPt~eEYl~~~~vSsg~~~l~~~~~~~~g~~lt~e~~e~l~~~p~i~~~~~~i~RL~NDI~S~~~E~~r 478 (569)
T 2j5c_A 399 LIEAKWYYKGHKPSLEEYMKNSWISIGGIPILSHLFFRLTDSIEEEAAESMHKYHDIVRASCTILRLADDMGTSLDEVER 478 (569)
T ss_dssp HHHHHHHHHTCCCCHHHHHHHHHHHTSCHHHHHHHHHHSCSSCCHHHHHHHTTTCHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHcCCCCCHHHHHhcccccchHHHHHHHHHHHcCCCCCHHHHHHhhccHHHHHHHHHHHHHhcccchhhhhccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhH
Q 012005 381 EHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMM 459 (473)
Q Consensus 381 G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~ 459 (473)
|+++|+|+|||+|+|+|+|+|+++++++|+++||+||++ +++ +++|++|+++++|+||+++++|+++.||||.| +.|
T Consensus 479 G~v~s~V~cyMke~g~s~eeA~~~i~~~ie~~wk~ln~e-~l~-~~vp~~~~~~~~nlaR~~~~~Y~~~~Dg~t~~~~~~ 556 (569)
T 2j5c_A 479 GDVPKSVQCYMNEKNASEEEAREHVRSLIDQTWKMMNKE-MMT-SSFSKYFVEVSANLARMAQWIYQHESDGFGMQHSLV 556 (569)
T ss_dssp ---CCHHHHC------CCHHHHHHHHHHHHHHHHHHHHH-HHH-CCSCHHHHHHHHHHHHHHHHHTGGGSCTTC-CCCHH
T ss_pred CCccHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH-Hhc-cCCCHHHHHHHHHHHheeehhccCCCcCCCCchHHH
Confidence 999999999999999999999999999999999999999 998 88999999999999999999999766999999 789
Q ss_pred HHHHHHHhcCccC
Q 012005 460 KDQVELVLRDPIK 472 (473)
Q Consensus 460 k~~i~sll~~Pi~ 472 (473)
|++|++||++|||
T Consensus 557 k~~i~~ll~~pi~ 569 (569)
T 2j5c_A 557 NKMLRDLLFHRYE 569 (569)
T ss_dssp HHHHHHHHTSCCC
T ss_pred HHHHHHHhccCCC
Confidence 9999999999997
No 7
>3p5p_A Taxadiene synthase; class I and II terpene cyclase fold, diterpene cyclase, DDXX NSE/DTE motif, 3-azacopalyl diphosphate; HET: A3C; 1.82A {Taxus brevifolia} PDB: 3p5r_A*
Probab=100.00 E-value=2.1e-139 Score=1156.37 Aligned_cols=460 Identities=30% Similarity=0.575 Sum_probs=433.8
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCC--------C--CCChHHHHHHHHHHHhcCcccchhhhccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD--------D--KDDIYIVSLCFRLLRQHGIKMSCDVFEKF 75 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~--------~--~~dl~~~al~FRlLR~~Gy~vs~dvf~~F 75 (473)
+.+++++|++||+||||||+|||++||+++|+++|+. +. + ..||++|||+|||||||||+||||||++|
T Consensus 243 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~-~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 321 (764)
T 3p5p_A 243 SIDLLERLSLVDNIEHLGIGRHFKQEIKGALDYVYRH-WSERGIGWGRDSLVPDLNTTALGLRTLRMHGYNVSSDVLNNF 321 (764)
T ss_dssp CCHHHHHHHHHHHHHHHTCGGGGHHHHHHHHHHHHHT-CCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH-hhhcccccccCCCCCCHHHHHHHHHHHHhcCCCccHhHHHhh
Confidence 4678999999999999999999999999999999975 22 1 25999999999999999999999999999
Q ss_pred cccccccccc---ccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhc--CCCCCchHHHHHHhcCCCccccc
Q 012005 76 KDDDGKFKAS---LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTN--SQVNSTFAEQIRHSLRVPLRRAV 150 (473)
Q Consensus 76 ~d~~g~f~~~---~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--~~~~~~l~~~V~~aL~~P~~~~~ 150 (473)
+|++|+|+++ +.+|++||||||||||+++|||+|||||+.||++||++++.+ .+ +++|+++|+|||++|||+++
T Consensus 322 ~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Fs~~~L~~~~~~~~~~-~~~L~~eV~~aL~~P~~~~l 400 (764)
T 3p5p_A 322 KDENGRFFSSAGQTHVELRSVVNLFRASDLAFPDERAMDDARKFAEPYLREALATKIST-NTKLFKEIEYVVEYPWHMSI 400 (764)
T ss_dssp BCTTSCBCSCTTCSCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHHTSCS-SSHHHHHHHHHHHSCGGGCC
T ss_pred hcCCCCccccccccccccHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHHHHHHhccCCC-CccHHHHHHHHhcCchhccc
Confidence 9999999984 589999999999999999999999999999999999998863 24 77899999999999999999
Q ss_pred chhhHHHHHHHhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhHHHHH
Q 012005 151 SRLESRYFLDIYSRDDL------------HDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERVVELY 218 (473)
Q Consensus 151 ~rlear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~~e~y 218 (473)
||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||++|||
T Consensus 401 ~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~l~rWwk~~~l-~~l~faRdr~ve~Y 479 (764)
T 3p5p_A 401 PRLEARSYIDSYDDNYVWQRKTLYRMPSLSNSKCLELAKLDFNIVQSLHQEELKLLTRWWKESGM-ADINFTRHRVAEVY 479 (764)
T ss_dssp HHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST-TTTTCCHHHHHHHH
T ss_pred hHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHhHHHhhhhceeHHhcCC-CcCccHHHHHHHHH
Confidence 99999999999998865 499999999999999999999999999999999999 59999999999999
Q ss_pred HHhhhhcccCCCCcchhHHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH------
Q 012005 219 FWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID------ 292 (473)
Q Consensus 219 f~~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~------ 292 (473)
||+ +| |||+||.+|+++||+++|++++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++
T Consensus 480 fw~-~~--feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~f~aL~~~~~ei~ 556 (764)
T 3p5p_A 480 FSS-AT--FEPEYSATRIAFTKIGCLQVLFDDMADIFATLDELKSFTEGVKRWDTSLLHEIPECMQTCFKVWFKLMEEVN 556 (764)
T ss_dssp HHT-CC--CCGGGHHHHHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHTSSTTGGGSCHHHHHHHHHHHHHHHHHH
T ss_pred HHH-Hh--CCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHHHHHH
Confidence 999 98 999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ------------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccc
Q 012005 293 ------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSN 354 (473)
Q Consensus 293 ------------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~ 354 (473)
|++++++|++||+|+++||+||+||||+||++|+|++++++.+++++|+.+|+++++|+..+
T Consensus 557 ~~~~~~~g~~~~~yl~~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vSsg~~~l~~~~~~~~G~~lt~e~~e~~~~~ 636 (764)
T 3p5p_A 557 NDVVKVQGRDMLAHIRKPWELYFNCYVQEREWLEAGYIPTFEEYLKTYAISVGLGPCTLQPILLMGELVKDDVVEKVHYP 636 (764)
T ss_dssp HHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHHTSSSCCCGGGHHHHSTT
T ss_pred HHHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhcchhchHHHHHHHHHHHcCCCCcHHHHhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999996566
Q ss_pred hHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhcccC-CCCCCHhHH
Q 012005 355 PDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQH-GVSEEEAVKALSLAVANSWKVINEELLLN-PTAIPLPLL 432 (473)
Q Consensus 355 ~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~s~eeA~~~i~~~i~~~wk~ln~~~~l~-~~~~p~~~~ 432 (473)
|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++ +++ ++++|++|+
T Consensus 637 ~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e-~l~~~~~~p~~~~ 715 (764)
T 3p5p_A 637 SNMFELVSLSWRLTNDTKTYQAEKARGQQASGIACYMKDNPGATEEDAIKHICRVVDRALKEASFE-YFKPSNDIPMGCK 715 (764)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHTTTCCCSHHHHHHHHSTTCCHHHHHHHHHHHHHHHHHHHHHH-HHSCCSSSCHHHH
T ss_pred HHHHHHHHHHHHhhhcccchHHHHhcCCcchHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHH-HhhCCCCCCHHHH
Confidence 9999999999999999999999999999999999999999 7999999999999999999999999 997 788999999
Q ss_pred HHHHHHhhhhhhhcCcCCCCCCCc-hhHHHHHHHHhcCccCC
Q 012005 433 QVIFDLSCSADFMYGDAQDRLTHS-TMMKDQVELVLRDPIKL 473 (473)
Q Consensus 433 ~~~ln~aR~~~~~Y~~~~D~~t~~-~~~k~~i~sll~~Pi~i 473 (473)
++++|++|++++||+++ ||||.| .+||++|++||++||+.
T Consensus 716 ~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~Pi~~ 756 (764)
T 3p5p_A 716 SFIFNLRLCVQIFYKFI-DGYGIANEEIKDYIRKVYIDPIQV 756 (764)
T ss_dssp HHHHHTHHHHHHHSCC--------CCCHHHHHHHHHTCCCCC
T ss_pred HHHHHHHHHHHHHhcCC-CCCCCCcHHHHHHHHHHHhcCCcc
Confidence 99999999999999999 999998 57999999999999974
No 8
>3s9v_A Abietadiene synthase, chloroplastic; alpha bundle/barrel, lyase, isomerase; 2.30A {Abies grandis}
Probab=100.00 E-value=2.5e-139 Score=1158.61 Aligned_cols=461 Identities=31% Similarity=0.575 Sum_probs=437.0
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCCC----------CCChHHHHHHHHHHHhcCcccchhhhccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFDD----------KDDIYIVSLCFRLLRQHGIKMSCDVFEKF 75 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~~----------~~dl~~~al~FRlLR~~Gy~vs~dvf~~F 75 (473)
+.|++++|++||+||||||+|||++||+++|+++|++ +.+ ..||++|||+|||||||||+||||||++|
T Consensus 267 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~-~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 345 (785)
T 3s9v_A 267 PLDLFERLWAVDTVERLGIDRHFKEEIKEALDYVYSH-WDERGIGWARENPVPDIDDTAMGLRILRLHGYNVSSDVLKTF 345 (785)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTT-CCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH-hhhccccccccCCCCCHHHHHHHHHHHHhcCCCCCHHHHHHH
Confidence 4678999999999999999999999999999999985 221 25999999999999999999999999999
Q ss_pred ccccccccccc---cccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhc-C-----CCCCchHHHHHHhcCCCc
Q 012005 76 KDDDGKFKASL---TNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTN-S-----QVNSTFAEQIRHSLRVPL 146 (473)
Q Consensus 76 ~d~~g~f~~~~---~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~-~-----~~~~~l~~~V~~aL~~P~ 146 (473)
+|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+ . ..+++|++||+|||++||
T Consensus 346 ~d~~g~F~~~~~e~~~dv~g~L~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~d~~~~~~~L~~eV~~aL~~P~ 425 (785)
T 3s9v_A 346 RDENGEFFCFLGQTQRGVTDMLNVNRCSHVSFPGETIMEEAKLCTERYLRNALENVDAFDKWAFKKNIRGEVEYALKYPW 425 (785)
T ss_dssp BCTTSCBCSSTTCCCCCHHHHHHHHHHHTSCCTTCHHHHHHHHHHHHHHHHHTTTCCTTCTTCSSSCHHHHHHHHHHSCG
T ss_pred HhcCCCeeeccccccccccccHHHHhHhhcCCCCcHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhCCcc
Confidence 99999999966 69999999999999999999999999999999999998753 1 126789999999999999
Q ss_pred ccccchhhHHHHHHHhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhH
Q 012005 147 RRAVSRLESRYFLDIYSRDDL------------HDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERV 214 (473)
Q Consensus 147 ~~~~~rlear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~ 214 (473)
|+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||+
T Consensus 426 ~~~l~RleaR~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ 504 (785)
T 3s9v_A 426 HKSMPRLEARSYIENYGPDDVWLGKTVYMMPYISNEKYLELAKLDFNKVQSIHQTELQDLRRWWKSSGF-TDLNFTRERV 504 (785)
T ss_dssp GGCCHHHHHHHHHHHCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-TSCSSSCCCH
T ss_pred ccCchHHHHHHHHHHhcccchhhhcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHcCC-CcCccHHHHH
Confidence 999999999999999998875 499999999999999999999999999999999999 6999999999
Q ss_pred HHHHHHhhhhcccCCCCcchhHHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH--
Q 012005 215 VELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-- 292 (473)
Q Consensus 215 ~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~-- 292 (473)
+|||||+ +|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++
T Consensus 505 ve~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~Lpeymk~~f~aL~~~~ 583 (785)
T 3s9v_A 505 TEIYFSP-ASFIFEPEFSKCREVYTKTSNFTVILDDLYDAHGSLDDLKLFTESVKRWDLSLVDQMPQQMKICFVGFYNTF 583 (785)
T ss_dssp HHHHHHH-HHHSCSGGGHHHHHHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHTSSSSGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhcCCccchHHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHcCchhhhcCChhHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhh
Q 012005 293 ----------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEW 350 (473)
Q Consensus 293 ----------------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~ 350 (473)
|++++++|++||+|+++||+||+||||+||++|+|+++++++++++||+.+|+++++|
T Consensus 584 nei~~~~~~~~g~~~~~ylk~aw~~l~~ayl~EAkW~~~gyvPT~eEYl~na~vS~g~~~l~~~~~~~~G~~lt~e~~e~ 663 (785)
T 3s9v_A 584 NDIAKEGRERQGRDVLGYIQNVWKVQLEAYTKEAEWSEAKYVPSFNEYIENASVSIALGTVVLISALFTGEVLTDEVLSK 663 (785)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHTTCSSSCCCHHHHTT
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccchHHHHHHHHHHHcCCCCCHHHHhc
Confidence 9999999999999999999999999999999999999999999999999999999999
Q ss_pred cccchHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCH
Q 012005 351 EMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQH-GVSEEEAVKALSLAVANSWKVINEELLLNPTAIPL 429 (473)
Q Consensus 351 ~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~ 429 (473)
+..+|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++ +++++ +|+
T Consensus 664 ~~~~~~l~~~~~~I~RL~NDi~S~k~E~~rG~~as~V~cYMke~~gvSeEeA~~~i~~~Ie~~wKeln~e-~l~~~-~p~ 741 (785)
T 3s9v_A 664 IDRESRFLQLMGLTGRLVNDTKTYQAERGQGEVASAIQCYMKDHPKISEEEALQHVYSVMENALEELNRE-FVNNK-IPD 741 (785)
T ss_dssp TSTTSHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHHHHH-HHHSC-CCH
T ss_pred ccccHHHHHHHHHHHHHhcccchhhHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhcCC-CCH
Confidence 65569999999999999999999999999999999999999999 9999999999999999999999999 99888 999
Q ss_pred hHHHHHHHHhhhhhhhcCcCCCCCCCc-h-hHHHHHHHHhcCccC
Q 012005 430 PLLQVIFDLSCSADFMYGDAQDRLTHS-T-MMKDQVELVLRDPIK 472 (473)
Q Consensus 430 ~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~-~~k~~i~sll~~Pi~ 472 (473)
+|+++++|++|++++||+++ ||||.| . +||++|++||++||.
T Consensus 742 ~~~~~~~n~aR~~~~~Y~~~-Dg~t~~~~~~~k~~i~~ll~~Pi~ 785 (785)
T 3s9v_A 742 IYKRLVFETARIMQLFYMQG-DGLTLSHDMEIKEHVKNCLFQPVA 785 (785)
T ss_dssp HHHHHHHHHHHHHHHHTCCC-C----CHHHHHHHHHHHHHTSCCC
T ss_pred HHHHHHHHHHHHHHHHhcCC-CCCCCCChHHHHHHHHHHhcccCC
Confidence 99999999999999999999 999999 4 699999999999983
No 9
>3sdr_A Alpha-bisabolene synthase; lyase, terpene synthase; HET: 210; 1.86A {Abies grandis} PDB: 3sdq_A 3sae_A* 3sdt_A* 3sdu_A* 3sdv_A*
Probab=100.00 E-value=1.5e-139 Score=1164.36 Aligned_cols=463 Identities=33% Similarity=0.627 Sum_probs=433.4
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCC--------C--CCChHHHHHHHHHHHhcCcccchhhhccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD--------D--KDDIYIVSLCFRLLRQHGIKMSCDVFEKF 75 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~--------~--~~dl~~~al~FRlLR~~Gy~vs~dvf~~F 75 (473)
+.+++++|++||+||||||+|||++||+++|+++|+. +. + ..||++|||+|||||||||+||||||++|
T Consensus 295 P~d~~e~l~lID~LqrLGi~~hF~~EI~~~L~~i~~~-~~~~gi~~~~~~~~~Dl~~tAl~FRlLR~~Gy~VS~dvf~~F 373 (817)
T 3sdr_A 295 PVDLLERLLIVDNIVRLGIYRHFEKEIKEALDYVYRH-WNERGIGWGRLNPIADLETTALGFRLLRLHRYNVSPAIFDNF 373 (817)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHH-CCTTCCCSSTTCSSCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH-hhhcccccccCCCCCCHHHHHHHHHHHHHcCCCccHhHHHHH
Confidence 4678999999999999999999999999999999974 21 1 25999999999999999999999999999
Q ss_pred ccccccccccc---cccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhc--CC----CCCchHHHHHHhcCCCc
Q 012005 76 KDDDGKFKASL---TNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTN--SQ----VNSTFAEQIRHSLRVPL 146 (473)
Q Consensus 76 ~d~~g~f~~~~---~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~--~~----~~~~l~~~V~~aL~~P~ 146 (473)
+|++|+|++++ .+|++||||||||||+++|||+|||||+.||++||++.+.+ .+ .+++|++||+|||++||
T Consensus 374 ~d~~g~F~~~~~~~~~dv~gmL~LYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~~~~~~~~~L~~eV~~aL~~P~ 453 (817)
T 3sdr_A 374 KDANGKFICSTGQFNKDVASMLNLYRASQLAFPGENILDEAKSFATKYLREALEKSETSSAWNNKQNLSQEIKYALKTSW 453 (817)
T ss_dssp BCC--CBCCCSSCHHHHHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHTSGGGGSHHHHHTTHHHHHHHHHHCCS
T ss_pred hhcCCCceechhhhchhhHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHhccccccccccCCcHHHHHHHHhcCch
Confidence 99999999965 69999999999999999999999999999999999998752 11 13679999999999999
Q ss_pred ccccchhhHHHHHHHhcCCCC------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHhH
Q 012005 147 RRAVSRLESRYFLDIYSRDDL------------HDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRERV 214 (473)
Q Consensus 147 ~~~~~rlear~yi~~y~~~~~------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr~ 214 (473)
|+++||||||+||++|++++. +|++||||||||||+||++||+||++++||||++|+ .++||||||+
T Consensus 454 ~~~l~Rlear~yI~~Y~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr~ 532 (817)
T 3sdr_A 454 HASVPRVEAKRYCQVYRPDYARIAKCVYKLPYVNNEKFLELGKLDFNIIQSIHQEEMKNVTSWFRDSGL-PLFTFARERP 532 (817)
T ss_dssp TTCCHHHHHHHHHTTCCTTCCEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSG-GGCTTSCCCH
T ss_pred hccChHHHHHHHHHHhCccchhhhhhcccccccccHHHHHHHHHHHHHHHHHhhhhhhhhceeHHhcCC-CcCccHHHHH
Confidence 999999999999999998875 499999999999999999999999999999999999 5999999999
Q ss_pred HHHHHHhhhhcccCCCCcchhHHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhcccccccccCChhHHHHHHHHHH--
Q 012005 215 VELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-- 292 (473)
Q Consensus 215 ~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~-- 292 (473)
+|||||+ +|++|||+||.+|+++||++++++++||+||+|||+||++.||+||+|||+++++.||+|||+||.+|++
T Consensus 533 ve~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~ygT~eEl~~ft~ai~RWD~~~~~~LPeymk~~~~aL~~~~ 611 (817)
T 3sdr_A 533 LEFYFLV-AAGTYEPQYAKCRFLFTKVACLQTVLDDMYDTYGTLDELKLFTEAVRRWDLSFTENLPDYMKLCYQIYYDIV 611 (817)
T ss_dssp HHHHHHH-HTTSCCGGGHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTCGGGGGGSCHHHHHHHHHHHHHH
T ss_pred HHHHHHH-HHhccCccchHHHHHHHHHHHHHHHHHHHcccCCCHHHHHHHHHHHHHcCchhhhcCchHHHHHHHHHHHHH
Confidence 9999999 9999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ----------------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhH-HHHHHHHHcCCCCchHHHh
Q 012005 293 ----------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLP-IAVASFIFMGDIASREIFE 349 (473)
Q Consensus 293 ----------------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~-~~~~~~~~~g~~l~~e~~e 349 (473)
|++++++|++||+|+++||+||+||||+||++|+|+++ ++..+++++|+.+|+++++
T Consensus 612 ~e~~~~~~~~~g~~~~~~l~~aw~~l~~ayl~EAkW~~~gyvPt~eEYl~na~vS~g~~~ll~~~~~~~~g~~lt~e~~e 691 (817)
T 3sdr_A 612 HEVAWEAEKEQGRELVSFFRKGWEDYLLGYYEEAEWLAAEYVPTLDEYIKNGITSIGQRILLLSGVLIMDGQLLSQEALE 691 (817)
T ss_dssp HHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHTCHHHHHHHHHTTCTTCCCCHHHHH
T ss_pred HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHhccccccccHHHHHHHHHHcCCCCCHHHHh
Confidence 99999999999999999999999999999999999999 8888899999999999999
Q ss_pred hcc--cchHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcC-CCCHHHHHHHHHHHHHHHHHHHHHhcccCCCC
Q 012005 350 WEM--SNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQH-GVSEEEAVKALSLAVANSWKVINEELLLNPTA 426 (473)
Q Consensus 350 ~~~--~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~-g~s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~ 426 (473)
|+. +.|+|+++++.|+||+|||+||++|+++|+++|+|+|||+|+ |+|+|+|+++++++|+++||+||++ ++++++
T Consensus 692 ~~~~~s~p~l~~~~~~I~RL~NDi~S~k~E~~rG~~assV~cYMke~~gvS~EeA~~~i~~~Ie~~wKeln~e-~l~~~~ 770 (817)
T 3sdr_A 692 KVDYPGRRVLTELNSLISRLADDTKTYKAEKARGELASSIECYMKDHPECTEEEALDHIYSILEPAVKELTRE-FLKPDD 770 (817)
T ss_dssp TTCCTTSCSHHHHHHHHHHHHHHHHSSCC------CCCHHHHHHHHSTTSCHHHHHHHHHHHHHHHHHHHHHH-HHSCCS
T ss_pred cccccchHHHHHHHHHHHHHhccchHHHHHHhcCCcchHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHH-HhCCCC
Confidence 965 445999999999999999999999999999999999999999 7999999999999999999999999 999889
Q ss_pred CCHhHHHHHHHHhhhhhhhcCcCCCCCCCc-hhHHHHHHHHhcCccCC
Q 012005 427 IPLPLLQVIFDLSCSADFMYGDAQDRLTHS-TMMKDQVELVLRDPIKL 473 (473)
Q Consensus 427 ~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~-~~~k~~i~sll~~Pi~i 473 (473)
+|++|+++++|++|++++||+++ ||||.| ++||++|++||++|||+
T Consensus 771 ~p~~~~~~~ln~aR~~~~~Y~~~-Dg~t~~~~~~k~~i~~ll~~pi~l 817 (817)
T 3sdr_A 771 VPFACKKMLFEETRVTMVIFKDG-DGFGVSKLEVKDHIKECLIEPLPL 817 (817)
T ss_dssp SCHHHHHHHHHHHHHHHHHTCSC-CSSCCCHHHHHHHHHHHHTCCCCC
T ss_pred CCHHHHHHHHHHHHHHHHHhcCC-CCCCCchHHHHHHHHHHhcCCCCC
Confidence 99999999999999999999999 999998 78999999999999985
No 10
>3pya_A ENT-copalyl diphosphate synthase, chloroplastic; class I and II terpene cyclase fold, class II diterpene CYCL DXXDD motif; HET: AG8 1PE; 2.25A {Arabidopsis thaliana} PDB: 3pyb_A*
Probab=100.00 E-value=2e-103 Score=861.38 Aligned_cols=407 Identities=20% Similarity=0.325 Sum_probs=356.5
Q ss_pred CCCcccchhhhHHHhhcCCccCcHHHHHHHHHHhhcCCCC----------CCCChHHHHHHHHHHHhcCcccchhhhccc
Q 012005 6 ADKPAQKLCLIDVVQRLGVAYHFIKEIDDALEKISHDPFD----------DKDDIYIVSLCFRLLRQHGIKMSCDVFEKF 75 (473)
Q Consensus 6 ~~~~~~~l~liD~lqrLGi~~hF~~EI~~~L~~~~~~~~~----------~~~dl~~~al~FRlLR~~Gy~vs~dvf~~F 75 (473)
+.|++++|++||+||||||+|||++||+++|+++|+. |. ...||++|||+|||||||||+||||||++|
T Consensus 242 P~d~~e~L~lID~LqRLGIs~hFe~EI~~~L~~i~~~-~~~~g~~~~~~~~~~DL~~tAL~FRLLRqhGy~VS~DvF~~F 320 (727)
T 3pya_A 242 PVDLFEHIWIVDRLQRLGISRYFEEEIKECLDYVHRY-WTDNGICWARCSHVQDIDDTAMAFRLLRQHGYQVSADVFKNF 320 (727)
T ss_dssp CCHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHHT-CCTTCCCSSSSCSCCCHHHHHHHHHHHHHTTCCCCGGGGGGG
T ss_pred CCcHHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHH-hhhcCcccccCCCCCCHHHHHHHHHHHHhCCCCCCHHHHHhc
Confidence 4678999999999999999999999999999999975 21 125999999999999999999999999999
Q ss_pred cccccccccc---ccccHHHHHHHHhhhcCCCCCCcHHHHHHHHHHHHHHhHhhc-CC-----CCCchHHHHHHhcCCCc
Q 012005 76 KDDDGKFKAS---LTNDVEGMLSLYEVAHLAIPGEDILDEAIVFTTTHLKSMVTN-SQ-----VNSTFAEQIRHSLRVPL 146 (473)
Q Consensus 76 ~d~~g~f~~~---~~~d~~~lL~LY~As~l~~~gE~iL~ea~~ft~~~L~~~~~~-~~-----~~~~l~~~V~~aL~~P~ 146 (473)
+ ++|+|++. ..+|++||||||||||+++|||+|||||+.||++||++.+.+ .+ .+++|+++|+|||+.||
T Consensus 321 k-~~G~F~~~~~e~~~Dv~glLsLYeAS~l~~~gE~iLdeA~~Ft~~~L~~~~~~~~~~dkw~~~~~L~~~V~~aL~~P~ 399 (727)
T 3pya_A 321 E-KEGEFFCFVGQSNQAVTGMFNLYRASQLAFPREEILKNAKEFSYNYLLEKREREELIDKWIIMKDLPGEIGFALEIPW 399 (727)
T ss_dssp E-ETTEECSSTTCCCCCHHHHHHHHHHHTTCCTTCHHHHHHHHHHHHHHHHHHHTTCCCCSSEECSCHHHHHHHHHHSCG
T ss_pred c-CCCcccccccccccccHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHhcCCcccccccCCcHHHHHHHHhcCcH
Confidence 9 89999964 368999999999999999999999999999999999998753 22 14689999999999999
Q ss_pred ccccchhhHHHHHHHhcCCCC-------------CCHHHHHHHhhhhHHHHHhhHHHHHHHHHHHHhhcccCCChhHHHh
Q 012005 147 RRAVSRLESRYFLDIYSRDDL-------------HDKTLLNFAKLDFNILQAMHQKEASEITRWWRDLDFLKKLPYIRER 213 (473)
Q Consensus 147 ~~~~~rlear~yi~~y~~~~~-------------~n~~lL~lAkldFn~~Q~~hq~El~~lsrW~~~~~l~~~l~faRdr 213 (473)
|+++||||||+||++|+++++ +|+.||||||||||+||++||+||++++||||++|| .++||||||
T Consensus 400 ~~~l~RleaR~yI~~Y~~~~~~~i~Kt~yr~~~~~n~~lLelAKlDFN~~Q~~hq~EL~~lsrWwk~~~l-~~l~faRdr 478 (727)
T 3pya_A 400 YASLPRVETRFYIDQYGGENDVWIGKTLYRMPYVNNNGYLELAKQDYNNCQAQHQLEWDIFQKWYEENRL-SEWGVRRSE 478 (727)
T ss_dssp GGCCHHHHHHHHHHHCCGGGCEEESSSEECCTTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTG-GGGTCCHHH
T ss_pred hcCChHHHHHHHHHHhccCcchhhhhhhccccccccHHHHHHHHHhHHHHHHHhHHHHhhhheeHHhcCc-ccCCchhhH
Confidence 999999999999999997654 699999999999999999999999999999999999 569999999
Q ss_pred HHHHHHHhhhhcccCCCCcchhHHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhccccc---------cccc---CCh
Q 012005 214 VVELYFWMLVGVSYEPNFSTGRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVARWDIG---------HIDA---LPE 281 (473)
Q Consensus 214 ~~e~yf~~~~~~~~eP~~s~~Rl~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~rWd~~---------~~~~---lpe 281 (473)
++|||||+ +|++|||+||.+|+++||.+++++++||+||+|| ||+++||+||+|||.+ +.+. +|+
T Consensus 479 ~ve~Yfw~-~~~~feP~~s~~R~~~aK~~~l~tviDD~yD~yG--eEl~~ft~av~rwd~~~~~~~~~~~~~~~~~~~p~ 555 (727)
T 3pya_A 479 LLECYYLA-AATIFESERSHERMVWAKSSVLVKAISSSFGESS--DSRRSFSDQFHEYIANARRSDHHFNDRNMRLDRPG 555 (727)
T ss_dssp HHHHHHHH-HTTSCCGGGHHHHHHHHHHHHHHHHHHHHHCSSH--HHHHHHHHHHHHHC-------------------CH
T ss_pred HHHHHHHH-HhccCCchhHHHHHHHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHhcccccccccccccchhhcccCCC
Confidence 99999999 9999999999999999999999999999999999 9999999999999974 3333 387
Q ss_pred h--HHHHHHHHHH------------------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHH
Q 012005 282 Y--MKFIFKTLID------------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVAS 335 (473)
Q Consensus 282 ~--mk~~f~al~~------------------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~ 335 (473)
| ||+||.+|++ |.++++++++|++ + +| |. +++..+
T Consensus 556 ~~~mk~~f~aL~~t~nei~~~~~k~qg~~v~~~l~~~W~~~l~s~~~Ea~-~--------~E---------Ae-llv~~I 616 (727)
T 3pya_A 556 SVQASRLAGVLIGTLNQMSFDLFMSHGRDVNNLLYLSWGDWMEKWKLYGD-E--------GE---------GE-LMVKMI 616 (727)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHSS-C--------CH---------HH-HHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHhcc-c--------cc---------ee-eeeeee
Confidence 7 9999999999 9999999999997 2 44 11 333333
Q ss_pred HHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHH
Q 012005 336 FIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKV 415 (473)
Q Consensus 336 ~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ 415 (473)
.+..|..+++ ++.+ +.+..|.++++.|+||+||+.+|++|+ .+++.+.|+..|++
T Consensus 617 ~l~sG~~l~e-~l~~-~ey~~L~~ltn~icrllndl~~~~~E~-----------------------~~~~~~~IE~~mqE 671 (727)
T 3pya_A 617 ILMKNNDLTN-FFTH-THFVRLAEIINRICLPRQYLKARRNDE-----------------------KEKTIKSMEKEMGK 671 (727)
T ss_dssp HHHSSSCGGG-GGSS-HHHHHHHHHHHHHSCCCC------CHH-----------------------HHHHHHHHHHHHHH
T ss_pred ecCCCcchHh-hccC-hhHHHHHHHHHHHhHHHhHHHHHHHHH-----------------------HHHHHHHHHHHHHH
Confidence 3334888898 8877 788889999999999999999999977 55789999999999
Q ss_pred HHHhcccCCC--CCCHhHHHHHHHHhhhhhhhcCcCCCCCCCchhHHHHHHHHhcCccC
Q 012005 416 INEELLLNPT--AIPLPLLQVIFDLSCSADFMYGDAQDRLTHSTMMKDQVELVLRDPIK 472 (473)
Q Consensus 416 ln~~~~l~~~--~~p~~~~~~~ln~aR~~~~~Y~~~~D~~t~~~~~k~~i~sll~~Pi~ 472 (473)
+++. +++++ .+|++| |+.+|+..||.. ||++|+ |+.+|..+|++||-
T Consensus 672 L~~l-Vl~~~~~~ip~~~-----tf~~V~ksFYy~---ay~~p~-i~~hI~kVl~~~~~ 720 (727)
T 3pya_A 672 MVEL-ALSESDTFRDVSI-----TFLDVAKAFYYF---ALCGDH-LQTHISKVLFQKVG 720 (727)
T ss_dssp HHHH-HHSCCTTTHHHHH-----HHHHHHHHHHHH---HHHTTS-CHHHHHHHHHSCCC
T ss_pred HHHH-HhccCCCCCCCcc-----cHHHHHHHHHhh---hcCCHH-HHHHHHHHHcCccc
Confidence 9999 99754 799999 999999999984 899998 99999999999983
No 11
>1ps1_A Pentalenene synthase; antibiotic biosynthesis, sesquiterpene cyclase, lyase; 2.60A {Streptomyces SP} SCOP: a.128.1.4 PDB: 1hm7_A 1hm4_A
Probab=100.00 E-value=6.3e-50 Score=406.48 Aligned_cols=238 Identities=19% Similarity=0.165 Sum_probs=215.3
Q ss_pred HHhhHHHHHHHH-HHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhH-HHHhHhhhhhhhhhhcccC--CCHH
Q 012005 184 QAMHQKEASEIT-RWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRI-FLSKIICLETLVDDTFDAY--GTFE 259 (473)
Q Consensus 184 Q~~hq~El~~ls-rW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~fD~~--gt~e 259 (473)
++.|.+|++..+ +||+++|+.+ .||+|+|++++|||. ++++++|+++.+|+ ++||+++|+|++||+||.+ ||++
T Consensus 15 ~~p~~~e~~~~~~~W~~~~~l~~-~~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~~~~~~~e 92 (337)
T 1ps1_A 15 QSPDHARAEAEQLAWPRSLGLIR-SDAAAERHLRGGYAD-LASRFYPHATGADLDLGVDLMSWFFLFDDLFDGPRGENPE 92 (337)
T ss_dssp CCTTHHHHHHSTTHHHHHTTSCC-SHHHHHHHHTTCHHH-HHHHHCTTCCTHHHHHHHHHHHHHHHHHHTTSSGGGGCHH
T ss_pred CCCCHHHHHHHHHHHHHHcCCCC-CHHHHHHHHhCCHHH-HHHHHCCCCCHHHHHHHHHHHHHHHHHhhccCCcCCCCHH
Confidence 356777887776 6999999964 699999999999999 99999999999999 9999999999999999988 6999
Q ss_pred HHHHHHHHHhcccccccccCChhHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCCCC-Chhhh
Q 012005 260 ELKIFTEAVARWDIGHIDALPEYMKFIFKTLID--------------------FQELVMKYFCEAKWLNEGYVP-SMDEY 318 (473)
Q Consensus 260 El~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~--------------------w~~~~~a~l~EA~W~~~g~iP-tleEY 318 (473)
|++.|++++.+|+.+ .+|++++++++++.+ |+++++++++||+|+.+|++| |++||
T Consensus 93 e~~~~~~~l~~~~~~---~~p~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ea~~~~~~~~P~s~eEY 169 (337)
T 1ps1_A 93 DTKQLTDQVAAALDG---PLPDTAPPIAHGFADIWRRTCEGMTPAWCARSARHWRNYFDGYVDEAESRFWNAPCDSAAQY 169 (337)
T ss_dssp HHHHHHHHHHGGGTS---CCCTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHTTC-------CHHHH
T ss_pred HHHHHHHHHHHHcCC---CCCCCCChHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHH
Confidence 999999999999864 478999999999988 999999999999999999999 99999
Q ss_pred hhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcCCCCH
Q 012005 319 KSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSE 398 (473)
Q Consensus 319 l~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~s~ 398 (473)
+++|++|+|++++++++++++|..+|++++++ +.+++|.++++.++||+|||+||+||+++|+++|+|.|||+++|+|+
T Consensus 170 l~~r~~s~g~~~~~~~~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDl~S~~kE~~~G~~~n~V~~~m~~~g~s~ 248 (337)
T 1ps1_A 170 LAMRRHTIGVQPTVDLAERAGRFEVPHRVFDS-AVMSAMLQIAVDVNLLLNDIASLEKEEARGEQNNMVMILRREHGWSK 248 (337)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCCCSHHHHHHHHHCCCH
T ss_pred HHHcccccchhhHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHhhHHHHHhcCCcchHHHHHHHHcCCCH
Confidence 99999999999999999999999999999988 67789999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhH
Q 012005 399 EEAVKALSLAVANSWKVINEELLLNPTAIPLPL 431 (473)
Q Consensus 399 eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~ 431 (473)
|+|++++.++++++||++|++ . ..+|..+
T Consensus 249 eeA~~~v~~~i~~~~~~~~~~-~---~~lp~~~ 277 (337)
T 1ps1_A 249 SRSVSHMQNEVRARLEQYLLL-E---SCLPKVG 277 (337)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH-H---HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH-H---HHhhhhh
Confidence 999999999999999999998 5 2355544
No 12
>1di1_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid biosynthesis, lyase; 2.50A {Penicillium roqueforti} SCOP: a.128.1.4 PDB: 1dgp_A
Probab=100.00 E-value=2.5e-48 Score=388.11 Aligned_cols=225 Identities=15% Similarity=0.104 Sum_probs=208.6
Q ss_pred hhHHHHHHHH-HHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhH-HHHhHhhhhhhhhhhcccCCCHHHHHH
Q 012005 186 MHQKEASEIT-RWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRI-FLSKIICLETLVDDTFDAYGTFEELKI 263 (473)
Q Consensus 186 ~hq~El~~ls-rW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~fD~~gt~eEl~~ 263 (473)
-|.+|++..+ +||+++|+. +.||+|+|++++|||. ++++++|+++.+|+ ++||++.|+|++||+||. |+.+|++.
T Consensus 13 P~~~~~~~~~~~W~~~~~l~-~~~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~~k~~~~~~~~DD~~D~-~~~~e~~~ 89 (300)
T 1di1_A 13 PRVKEVQDEVDGYFLENWKF-PSFKAVRTFLDAKFSE-VTCLYFPLALDDRIHFACRLLTVLFLIDDVLEH-MSFADGEA 89 (300)
T ss_dssp TTHHHHHHHHHHHHHHHSCC-SSHHHHHHHHHHCHHH-HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHHH-SCHHHHHH
T ss_pred cCHHHHHHHHHHHHHHcCCC-CCHHHHHHHHhcCcch-hhhhcCCCCCHHHHHHHHHHHHHHHHHHhcccc-CCHHHHHH
Confidence 4677888877 588999996 5799999999999999 88888899999999 999999999999999999 78999999
Q ss_pred HHHHHhcccccccccCChhHHHHHHHHHH----------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccc
Q 012005 264 FTEAVARWDIGHIDALPEYMKFIFKTLID----------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSID 327 (473)
Q Consensus 264 ft~ai~rWd~~~~~~lpe~mk~~f~al~~----------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g 327 (473)
|++++.+|+.+ +.+|++++++++++++ |+.++++++ |++|+.+|++||++||+++|++|+|
T Consensus 90 ~~~~~~~~~~~--~~lp~~~~~~~~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~-ea~~~~~~~~Ps~eeYl~~r~~s~g 166 (300)
T 1di1_A 90 YNNRLIPISRG--DVLPDRTKPEEFILYDLWESMRAHDAELANEVLEPTFVFMR-AQTDRARLSIHELGHYLEYREKDVG 166 (300)
T ss_dssp HHHHHHHHHHT--SSCCCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTTCCCCCCCCSHHHHHHHHHTCHH
T ss_pred HHHHHHHHccC--CCCCCCccHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHH-HHhccccCCCCCHHHHHHHHhhhcc
Confidence 99999999875 4689999999999988 777888886 8999999999999999999999999
Q ss_pred hhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCC--------CcchhhHHhhcCCCCHH
Q 012005 328 FLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREH--------NPSAVECYKNQHGVSEE 399 (473)
Q Consensus 328 ~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V~cyM~e~g~s~e 399 (473)
++++++++++++|..+|+++++ ..++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|+|
T Consensus 167 ~~~~~~~~~~~~g~~l~~e~~~---~~~~l~~~~~~~~~l~NDl~S~~kE~~~g~~~h~~~~~~~n~V~~~m~~~g~s~e 243 (300)
T 1di1_A 167 KALLSALMRFSMGLRLSADELQ---DMKALEANCAKQLSVVNDIYSYDKEEEASRTGHKEGAFLCSAVKVLAEESKLGIP 243 (300)
T ss_dssp HHHHHHHHHHHHTCCCCHHHHH---TTHHHHHHHHHHHHHHHHHHHTTTTCCC----------CCCHHHHHHHHHTCCHH
T ss_pred HHHHHHHHHHHcCCCCCHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhhccccccccccchhHHHHHHHcCCCHH
Confidence 9999999999999999999999 369999999999999999999999999999 77999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 012005 400 EAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 400 eA~~~i~~~i~~~wk~ln~~ 419 (473)
+|+++++++++++||++|+.
T Consensus 244 eA~~~~~~~i~~~~~~~~~~ 263 (300)
T 1di1_A 244 ATKRVLWSMTREWETVHDEI 263 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999987
No 13
>3bny_A Aristolochene synthase; sesquiterpene cyclase, isoprenoid, farnesyl diphosphate, magnesium, cyclization, lyase; HET: FPF; 1.89A {Aspergillus terreus} PDB: 2e4o_A 2oa6_A* 3bnx_A* 3cke_A*
Probab=100.00 E-value=5.9e-47 Score=381.97 Aligned_cols=227 Identities=17% Similarity=0.125 Sum_probs=207.3
Q ss_pred HHhhHHHHHHHH-HHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhH-HHHhHhhhhhhhhhhcccCCCHHHH
Q 012005 184 QAMHQKEASEIT-RWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRI-FLSKIICLETLVDDTFDAYGTFEEL 261 (473)
Q Consensus 184 Q~~hq~El~~ls-rW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~fD~~gt~eEl 261 (473)
...|.+|++..+ +||+++|+... ||+|+|++++|||. ++++++|+++.+|+ ++||+++|+|++||+||. |+.+|+
T Consensus 25 ~~p~~~e~~~~~~~W~~~~~l~~~-~~~r~r~~~~~~~~-~~~~~~P~~~~~rl~~~ak~~~~~~~~DD~~D~-~~~~e~ 101 (320)
T 3bny_A 25 CHPLVEEVSKEVDGYFLQHWNFPN-EKARKKFVAAGFSR-VTCLYFPKALDDRIHFACRLLTVLFLIDDLLEY-MSFEEG 101 (320)
T ss_dssp CCTTHHHHHHHHHHHHHHHSCCSS-HHHHHHHHHHCHHH-HHHHHCTTSCTTTHHHHHHHHHHHHHHHHHHTT-SCHHHH
T ss_pred CCcCHHHHHHHHHHHHHHcCCCCC-hHHHHHHHhcCchh-hHhhhCCCCCHHHHHHHHHHHHHHHHhhccccc-CChhhH
Confidence 345777888877 58899999655 99999999999999 88888899999999 999999999999999999 789999
Q ss_pred HHHHHHHhcccccccccCChhHHHHHHHHHH----------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccc
Q 012005 262 KIFTEAVARWDIGHIDALPEYMKFIFKTLID----------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRS 325 (473)
Q Consensus 262 ~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~----------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S 325 (473)
+.|++++.+|+.+ +.+|++++++++++++ |+.++ ++++|++|+.+|++||++||+++|++|
T Consensus 102 ~~~~~~l~~~~~~--~~~p~~~~~~~~al~d~~~e~~~~~~~~~~~~~~~~~-~~~~e~~~~~~~~~Ps~eeYl~~r~~s 178 (320)
T 3bny_A 102 SAYNEKLIPISRG--DVLPDRSIPVEYIIYDLWESMRAHDREMADEILEPVF-LFMRAQTDRTRARPMGLGGYLEYRERD 178 (320)
T ss_dssp HHHHHHHHHHHHT--SSCCCTTSHHHHHHHHHHHHHHHHHHHHHHHTHHHHH-HHHHHTSCCCCCCCCCHHHHHHHHHTC
T ss_pred HHHHHHHHHHhcC--CCCCCCcCHHHHHHHHHHHHHHhhCHHHHHHHHHHHH-HHHHHHhhhccCCCCCHHHHHHHhhhc
Confidence 9999999999865 4679999999999987 44555 589999999999999999999999999
Q ss_pred cchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCC--------CcchhhHHhhcCCCC
Q 012005 326 IDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREH--------NPSAVECYKNQHGVS 397 (473)
Q Consensus 326 ~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~--------~~n~V~cyM~e~g~s 397 (473)
+|++++++++++++|..+|+++++. +++|+++++.++||+|||+||+||+++|+ ++|+|.|||+++|+|
T Consensus 179 ~g~~~~~~~~~~~~g~~l~~e~~~~---~~~l~~~~~~~~~L~NDl~S~~kE~~~g~~~~~~~~~~~N~V~~~m~~~g~s 255 (320)
T 3bny_A 179 VGKELLAALMRFSMGLKLSPSELQR---VREIDANCSKHLSVVNDIYSYEKELYTSKTAHSEGGILCTSVQILAQEADVT 255 (320)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHH---THHHHHHHHHHHHHHHHHHHHHHHCC-----------CCSHHHHHHHHHTCC
T ss_pred ccHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHHHHHHHHHhcccchhHHHHHhhcccccccccccchHHHHHHHcCCC
Confidence 9999999999999999999999994 69999999999999999999999999998 789999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 012005 398 EEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 398 ~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
+|+|++++++++++.|+++|+.
T Consensus 256 ~eeA~~~~~~~i~~~~~~~~~l 277 (320)
T 3bny_A 256 AEAAKRVLFVMCREWELRHQLL 277 (320)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986
No 14
>3kb9_A EPI-isozizaene synthase; terpenoid cyclase, alpha-helical fold, farnesyl diphosphate, metal-binding, lyase, magnesium; HET: BTM; 1.60A {Streptomyces coelicolor} PDB: 3kbk_A 3lgk_A 3lg5_A*
Probab=100.00 E-value=1.2e-44 Score=374.89 Aligned_cols=222 Identities=11% Similarity=0.048 Sum_probs=206.7
Q ss_pred HHHHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCCcchhH-HHHhHhhhhhhhhhhccc--CC-CHHHHHHHHHHHh
Q 012005 194 ITRWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRI-FLSKIICLETLVDDTFDA--YG-TFEELKIFTEAVA 269 (473)
Q Consensus 194 lsrW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~fD~--~g-t~eEl~~ft~ai~ 269 (473)
+.+||+++|+. ..+++|+|+++++||. ++++++|+++.+|+ ++||+++|+|++||+||. +| ++++++.+++++.
T Consensus 66 ~~~W~~~~gl~-~~~~~r~r~~~~~~~~-laa~~~P~as~erL~l~a~~~~w~f~~DD~~D~~~~g~~~~~~~~~~~~l~ 143 (382)
T 3kb9_A 66 TRTWLLEKRLM-PADKVEEYADGLCYTD-LMAGYYLGAPDEVLQAIADYSAWFFVWDDRHDRDIVHGRAGAWRRLRGLLH 143 (382)
T ss_dssp HHHHHHHTTSS-CHHHHHHHHHHHCHHH-HHHTTSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHcCCC-CCHHHHHHHHhCCHHH-HHHHhCCCCCHHHHHHHHHHHHHHHHHhhcccccccccCHHHHHHHHHHHH
Confidence 45799999995 4478999999999999 89999999999999 999999999999999996 55 9999999999999
Q ss_pred cccccccccCChhHHHHHHHHHH--------------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchh
Q 012005 270 RWDIGHIDALPEYMKFIFKTLID--------------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFL 329 (473)
Q Consensus 270 rWd~~~~~~lpe~mk~~f~al~~--------------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~ 329 (473)
++-.. ...+|++++++++++.+ |++++++|++||+|+.+|++||++|||++|++|+|++
T Consensus 144 ~~l~~-~~~~p~~~~p~~~al~dl~~~~~~~~~~~~~~r~~~~~~~~~~a~l~Ea~w~~~g~vPs~eEYl~~r~~s~g~~ 222 (382)
T 3kb9_A 144 TALDS-PGDHLHHEDTLVAGFADSVRRLYAFLPATWNARFARHFHTVIEAYDREFHNRTRGIVPGVEEYLELRRLTFAHW 222 (382)
T ss_dssp HHHHS-CGGGTTCSSHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTHH
T ss_pred HHhcC-CCCCCCCCChHHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCHH
Confidence 86222 23358889999999888 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHH
Q 012005 330 PIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAV 409 (473)
Q Consensus 330 ~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i 409 (473)
++++++++++|..+|++++++ +.+++|+++++.++||+|||+||+||+++|+++|+|.|||+++|+|+|+|+++++++|
T Consensus 223 ~~~~l~~~~~g~~l~~~~~~~-p~~~~l~~~~~~i~rL~NDi~S~~kE~~~G~~~N~V~~~m~~~g~s~eeA~~~v~~~i 301 (382)
T 3kb9_A 223 IWTDLLEPSSGCELPDAVRKH-PAYRRAALLSQEFAAWYNDLCSLPKEIAGDEVHNLGISLITHHSLTLEEAIGEVRRRV 301 (382)
T ss_dssp HHHHHHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHSCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHhC-hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHHHHcCCCCHHHHHHHHHHHH
Confidence 999999999999999999998 7789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 012005 410 ANSWKVINEE 419 (473)
Q Consensus 410 ~~~wk~ln~~ 419 (473)
+++||++|+.
T Consensus 302 ~~~~k~~~~~ 311 (382)
T 3kb9_A 302 EECITEFLAV 311 (382)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999999986
No 15
>3v1v_A 2-MIB synthase, 2-methylisoborneol synthase; class I terpenoid cyclase fold, DDXXXXD motif, NDXXSXXXE MOT methylisoborneol biosynthesis; HET: GST; 1.80A {Streptomyces coelicolor} PDB: 3v1x_A*
Probab=99.97 E-value=3.6e-32 Score=284.89 Aligned_cols=226 Identities=14% Similarity=0.162 Sum_probs=170.9
Q ss_pred HHHHHHH-HHHHhhcccCCChhHHHhHHHHHHHhhhhcccCCCC-cchhH-HHHhHhhhhhhhhhh-cccCC-CHHH-HH
Q 012005 189 KEASEIT-RWWRDLDFLKKLPYIRERVVELYFWMLVGVSYEPNF-STGRI-FLSKIICLETLVDDT-FDAYG-TFEE-LK 262 (473)
Q Consensus 189 ~El~~ls-rW~~~~~l~~~l~faRdr~~e~yf~~~~~~~~eP~~-s~~Rl-~~ak~~~l~~~~DD~-fD~~g-t~eE-l~ 262 (473)
+|++.-. .|..++++... +-.|+++..+.|.. ++++..|.. +..|+ +++||++|+|++||. +|..| +.+. ..
T Consensus 129 ~ev~~~~~~W~~~~~~l~~-~~~~~~~~~~~~~l-laa~~yP~A~~~e~L~l~ad~~~W~F~~DD~~~D~~g~s~~~~~~ 206 (433)
T 3v1v_A 129 EEVSRRIKRWAEDEVQLYP-EEWEGQFDGFSVGR-YMVGCHPDAPTVDHLMLATRLMVAENAVDDCYCEDHGGSPVGLGG 206 (433)
T ss_dssp HHHHHHHHHHHHHTSCCCC-----CCSCHHHHHH-HHHHHCTTCSSHHHHHHHHHHHHHHHHHHHHHTC----CCTTHHH
T ss_pred HHHHHHHHHHHHHcCCCCC-HHHHHHHHhcCHHH-HHHHhCCCCCCHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhHH
Confidence 3555444 69999876433 33578888888866 444555999 79999 999999999999999 59754 3222 11
Q ss_pred HHHH---HHhcccccccccC--------ChhHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhcCCCCC
Q 012005 263 IFTE---AVARWDIGHIDAL--------PEYMKFIFKTLID-----------------FQELVMKYFCEAKWLNEGYVPS 314 (473)
Q Consensus 263 ~ft~---ai~rWd~~~~~~l--------pe~mk~~f~al~~-----------------w~~~~~a~l~EA~W~~~g~iPt 314 (473)
.+.. ++..... ..+.- .+.+...+.-+++ |++++++|++||+|+.+|++||
T Consensus 207 ~l~~a~~~~d~l~~-~~~g~p~~~~~~~~dp~~~al~d~~~~l~~~a~~~q~~r~~~~~~~~~~a~l~EA~W~~~g~vPs 285 (433)
T 3v1v_A 207 RLLLAHTAIDHFHS-TAEYTPTWQASLAADAPRRAYDSAMGYFVRAATPSQSDRYRHDMARLHLGYLAEGAWAQTGHVPE 285 (433)
T ss_dssp HHHHHHTTTSCCCC-CTTTHHHHHHHTTSSHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHhhhc-ccCCCCccccccCCchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence 2222 1221110 01100 1111112222222 8999999999999999999999
Q ss_pred hhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhccC-CCcchhhHHhhc
Q 012005 315 MDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQKRE-HNPSAVECYKNQ 393 (473)
Q Consensus 315 leEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~~G-~~~n~V~cyM~e 393 (473)
+||||++|++| |+.++++++.+++|..+|++++++ +.+++|+++++.++||+|||+||+||+++| +++|+|.|||++
T Consensus 286 leEYl~~R~~s-g~~p~~~l~e~~~g~~lp~~v~~~-p~~~~L~~~~~~i~rL~NDI~Sy~kE~~~gg~~~N~V~~~mke 363 (433)
T 3v1v_A 286 VWEYLAMRQFN-NFRPCPTITDTVGGYELPADLHAR-PDMQRVIALAGNATTIVNDLYSYTKELNSPGRHLNLPVVIAER 363 (433)
T ss_dssp HHHHHHHHHHS-SSTTTGGGHHHHHTCCCCHHHHTS-HHHHHHHHHHHHHHHHHHHHHSHHHHTTSSSCCCCHHHHHHHH
T ss_pred HHHHHHHHHHH-hHHHHHHHHHHHcCCCCCHHHHhC-chHHHHHHHHHHHHHHhchHHHHHHHHhcCCCCCcHHHHHHHh
Confidence 99999999999 777777888999999999999998 678899999999999999999999999995 788999999999
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 394 HGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 394 ~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
+|+|+|+|++++++|++++++++.+.
T Consensus 364 ~g~S~eeA~~~v~~~i~~~~~~F~~~ 389 (433)
T 3v1v_A 364 EQLCERDAYLKAVEVHNELQHSFEAA 389 (433)
T ss_dssp HTCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999876
No 16
>1yyq_A Trichodiene synthase; terpenoid cyclase fold, site-directed mutant, pyrophosphate, lyase; 2.10A {Fusarium sporotrichioides} PDB: 1yj4_A 1yyr_A* 1yys_A* 1jfa_A 1jfg_A 2q9y_A* 2q9z_A 2ael_A* 2aek_A* 2aet_A 2ps7_A 2ps8_A 1kiy_A 1kiz_A 1yyt_A* 1yyu_A* 2ps5_A 2ps4_A 2ps6_A
Probab=99.74 E-value=1e-17 Score=172.26 Aligned_cols=226 Identities=15% Similarity=0.080 Sum_probs=162.1
Q ss_pred HHHHHHHhhc------------ccCCChhHHHhHHHHHHHhhhhcccCCCCcchhH-HHHhHhhhhhhhhhhcccCCCHH
Q 012005 193 EITRWWRDLD------------FLKKLPYIRERVVELYFWMLVGVSYEPNFSTGRI-FLSKIICLETLVDDTFDAYGTFE 259 (473)
Q Consensus 193 ~lsrW~~~~~------------l~~~l~faRdr~~e~yf~~~~~~~~eP~~s~~Rl-~~ak~~~l~~~~DD~fD~~gt~e 259 (473)
+..+|..+.| +. .-+-..+++..+-.|+ ++..| |+.+...+ .++++++|+|++||++|..+ +
T Consensus 34 ~~l~w~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~t~~~l-aar~Y-P~a~~e~l~liad~~~~~F~lDD~~d~~~--~ 108 (374)
T 1yyq_A 34 ENLHYAYNKAAHHFAQPRQQQLLK-VDPKRLQASLQTIVGM-VVYSW-AKVSKECMADLSIHYTYTLVLDDSKDDPY--P 108 (374)
T ss_dssp HHHHHHHHHHHHHHTSHHHHHHSC-CCHHHHHHHHHHHHHH-HHHHS-TTSCHHHHHHHHHHHHHHHHHTTCCSCSH--H
T ss_pred HHHHHHHHhccchhcccccccccc-cCHHHHHHHHHHHHHH-HhhcC-CCCCHHHHHHHHHHHHHHHhhcccccCcH--H
Confidence 3347888888 42 2344567777777787 77666 99999988 89999999999999999653 6
Q ss_pred HHHHHHHHHhcccccccccCChhHHHHHHHHHH-----------------HHHHHHHHHHHHHHhhcCCCCChhhhhhhc
Q 012005 260 ELKIFTEAVARWDIGHIDALPEYMKFIFKTLID-----------------FQELVMKYFCEAKWLNEGYVPSMDEYKSVS 322 (473)
Q Consensus 260 El~~ft~ai~rWd~~~~~~lpe~mk~~f~al~~-----------------w~~~~~a~l~EA~W~~~g~iPtleEYl~~r 322 (473)
++..|.+.+.+ .... +..+-..+..++. |.+++.++.+|+.. .+..|+.++|...+
T Consensus 109 ~l~~~~~~ll~--G~~~---~~Pl~~al~dl~~rl~~~~~p~~~~rf~~s~~~~~~a~~~Ea~n--~~~~p~~~~Y~~~r 181 (374)
T 1yyq_A 109 TMVNYFDDLQA--GREQ---AHPWWALVNEHFPNVLRHFGPFCSLNLIRSTLDFFEGCWIEQYN--FGGFPGSHDYPQFL 181 (374)
T ss_dssp HHTTHHHHHHH--TCCC---SSHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHTTC--CCCCTTCTTHHHHH
T ss_pred HHHHHHHHHhc--CCCC---CChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc--cCCCCCHHHHHHHH
Confidence 67777766553 2211 1222222222222 68999999999863 77789999999998
Q ss_pred ccccchhHHHHHHHHHcCCCCchHHHh---hcccchHHHHHHHHHHHHhcCccchhhhhc-cCCCcchhhHHhhcCCCCH
Q 012005 323 LRSIDFLPIAVASFIFMGDIASREIFE---WEMSNPDIIIAAETIIRFLDDIAGHKFEQK-REHNPSAVECYKNQHGVSE 398 (473)
Q Consensus 323 ~~S~g~~~~~~~~~~~~g~~l~~e~~e---~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~-~G~~~n~V~cyM~e~g~s~ 398 (473)
+.++|+.-.... -.+|+..+. .++.+...+.....++.|+|||.||.||.. .|+.+|+|.+++.++|+|.
T Consensus 182 R~~sG~~E~~~~------~~~P~~~~~e~~~~~~~~~~i~am~~~i~~~NDIlSf~KE~~~~Gd~~NlV~vl~~~~g~S~ 255 (374)
T 1yyq_A 182 RRMNGLGHCVGA------SLWPKEQFNERSLFLEITSAIAQMENWMVWVNDLMSFYKEFDDERDQISLVKNYVVSDEISL 255 (374)
T ss_dssp HHHHHCHHHHHH------TTCCTTTCCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCCCHHHHHHHHHTCCH
T ss_pred HhhccHHHHHHH------hhccccccchhhcchhHHHHHHHHHHHHHhhhhhhccchhhhccCCccchhhhehhcCCCCH
Confidence 888887543322 224444331 113345667777779999999999999998 5999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccCCCCCCHhHHHHHHHHhh
Q 012005 399 EEAVKALSLAVANSWKVINEELLLNPTAIPLPLLQVIFDLSC 440 (473)
Q Consensus 399 eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~~~~ln~aR 440 (473)
++|++++..++..+..++.+. +. ...|. +++.+-+..|
T Consensus 256 ~eAl~~v~~~~~~~~~r~~~~--L~-~~~~~-~l~al~~~ir 293 (374)
T 1yyq_A 256 HEALEKLTQDTLHSSKQMVAV--FS-DKDPQ-VMDTIECFMH 293 (374)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH--HS-SSCHH-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH--hc-cCCHH-HHHHHHHHHh
Confidence 999999999999999988664 42 22332 4455555555
No 17
>3acx_A Dehydrosqualene synthase; CRTM, carotenoid biosynthesis, staphyloxanthin biosynthesis, transferase, head-TO-head condensation, inhibitor; HET: 673; 1.31A {Staphylococcus aureus} PDB: 2zcp_A* 2zcq_A* 2zcr_A* 2zcs_A* 2zy1_A* 3acw_A* 2zco_A* 3acy_A* 3npr_A* 3nri_A* 3tfn_A* 3tfp_A* 3tfv_A* 3adz_A* 3lgz_B* 3vjd_A* 3vje_A* 3ae0_A* 4ea2_A* 4e9u_A* ...
Probab=86.43 E-value=16 Score=35.35 Aligned_cols=183 Identities=13% Similarity=0.079 Sum_probs=94.3
Q ss_pred hhHHHHhHhhhhhhhhhhcccCCCHHHHHHHHHHHhc-cccccc--ccCChhHHHHHHHHHH-----------HHHHHHH
Q 012005 234 GRIFLSKIICLETLVDDTFDAYGTFEELKIFTEAVAR-WDIGHI--DALPEYMKFIFKTLID-----------FQELVMK 299 (473)
Q Consensus 234 ~Rl~~ak~~~l~~~~DD~fD~~gt~eEl~~ft~ai~r-Wd~~~~--~~lpe~mk~~f~al~~-----------w~~~~~a 299 (473)
.|-.+.-+-.|.-.+||+-|....+.+++.+.+.+++ .+.... ...|+ .++..++.+ +.+++.+
T Consensus 39 ~R~av~alYaf~R~~Ddi~D~~~~~~~L~~w~~~l~~~~~g~~~~~~~~~~--~pv~~al~~~~~~~~l~~~~~~~li~g 116 (293)
T 3acx_A 39 QRKAVWAIYAVCRKIDDSIDVYGDIQFLNQIKEDIQSIEKYPYEYHHFQSD--RRIMMALQHVAQHKNIAFQSFYNLIDT 116 (293)
T ss_dssp HHHHHHHHHHHHHHHHHGGGGTSSTHHHHHHHHHHHHHHHCTTSCCCCSSC--HHHHHHHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHhccCCCHHHHHHHHHHHHHHhCCCCcccCCCCC--CHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 5555556666777889999976554446666665554 122110 00022 245555544 6777777
Q ss_pred HHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhc
Q 012005 300 YFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQK 379 (473)
Q Consensus 300 ~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~ 379 (473)
+-. +......+|++|+......+.|+--.+++-.++... .++..+.. ..+-.+.. ++.++-|+. ....
T Consensus 117 ~~~---Dl~~~~~~t~~dL~~Yc~~vAg~VG~l~~~l~g~~~--~~~~~~~A---~~lG~AlQ-ltNilRDv~---eD~~ 184 (293)
T 3acx_A 117 VYK---DQHFTMFETDAELFGYCYGVAGTVGEVLTPILSDHE--THQTYDVA---RRLGESLQ-LINILRDVG---EDFE 184 (293)
T ss_dssp HHH---HTTCCCCSSHHHHHHHHHHHTHHHHHHHHHHHCSSC--CHHHHHHH---HHHHHHHH-HHHHHHCHH---HHHH
T ss_pred HHH---HcCCCCCCCHHHHHHHHHHhhHHHHHHHHHHhCCCC--cHHHHHHH---HHHHHHHH-HHHHHHHHH---HHHh
Confidence 743 333456789998888887777765555554444321 12222221 11211111 223344553 3344
Q ss_pred cCCCcchhhHHhhcCCCCHHH---------HHHHHHHHHHHHHHHHHHhcccCCCCCCHhHH
Q 012005 380 REHNPSAVECYKNQHGVSEEE---------AVKALSLAVANSWKVINEELLLNPTAIPLPLL 432 (473)
Q Consensus 380 ~G~~~n~V~cyM~e~g~s~ee---------A~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~ 432 (473)
+|-+ =+=.-.|.++|++.++ ..+-+..++..+..-+.+. .--...+|..+.
T Consensus 185 ~gR~-YLP~d~l~~~gv~~e~l~~~~~~~~~~~~~~~l~~~A~~~~~~a-~~~~~~lp~~~r 244 (293)
T 3acx_A 185 NERI-YFSKQRLKQYEVDIAEVYQNGVNNHYIDLWEYYAAIAEKDFRDV-MDQIKVFSIEAQ 244 (293)
T ss_dssp TTCC-CSCHHHHHHHTCCHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHTGGGSCTTHH
T ss_pred CCcE-EeCHHHHHHcCCCHHHhcccCCCHHHHHHHHHHHHHHHHHHHHH-HHhHHhCCHHHH
Confidence 5643 1112245678998776 2344556666666666553 211233565444
No 18
>4hd1_A Squalene synthase HPNC; MCSG, structural genomics, PSI-biology, midwest center for S genomics, transferase; 2.40A {Alicyclobacillus acidocaldarius subsp}
Probab=82.95 E-value=35 Score=32.93 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=87.7
Q ss_pred hhHHHHhHhhhhhhhhhhcccCC-C-HHHHHHHHHHHhcc-cccccccCChhHHHHHHHHHH-----------HHHHHHH
Q 012005 234 GRIFLSKIICLETLVDDTFDAYG-T-FEELKIFTEAVARW-DIGHIDALPEYMKFIFKTLID-----------FQELVMK 299 (473)
Q Consensus 234 ~Rl~~ak~~~l~~~~DD~fD~~g-t-~eEl~~ft~ai~rW-d~~~~~~lpe~mk~~f~al~~-----------w~~~~~a 299 (473)
.|-.+.-+-.|.=.+||+-|... . ...++.+-+.+.+. ... |.. +++.++.+ +.+++.+
T Consensus 40 ~R~~~~alYaf~R~~Ddi~D~~~~~~~~~L~~~~~~l~~~~~g~-----~~~--pv~~al~~~~~~~~l~~~~~~~li~g 112 (294)
T 4hd1_A 40 LRPHFYSVYAFCRGVDDLGDEFAGDRMAALDAYEEELRRAFAGE-----ATT--PAFRALQFTIATCNLPMEPFLRLIEA 112 (294)
T ss_dssp THHHHHHHHHHHHHHHHTSTTCCSCHHHHHHHHHHHHHHHHHTC-----CCS--HHHHHHHHHHHHHTCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHhcCC-----CCC--HHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 34433445556667899999643 2 34455555555441 111 111 45555554 6778888
Q ss_pred HHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCccchhhhhc
Q 012005 300 YFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIAGHKFEQK 379 (473)
Q Consensus 300 ~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~S~~kE~~ 379 (473)
+..... ....+|++|+......+.|+--.+++-.+ |.. +++..... ..+-. +-.++-++-|+. ...+
T Consensus 113 ~~~Dl~---~~~~~t~~dL~~Y~~~vAg~VG~m~~~i~--g~~-~~~~~~~A---~~lG~-AlQltNilRDv~---eD~~ 179 (294)
T 4hd1_A 113 NRRDQR---KHTYDTWEDLRDYCRYSADPVGRLVLGIF--GCL-DDERARLS---DATCT-ALQVANHMQDID---RDLA 179 (294)
T ss_dssp HHHHHH---CSBCCSHHHHHHHHHHHTHHHHHHHHHHT--TCC-SHHHHHHH---HHHHH-HHHHHHHHHTHH---HHHH
T ss_pred HHhccc---cCCCCCHHHHHHHHHhccchHHHHHHHHh--CCC-CHHHHHHH---HHHHH-HHHHHHHHHhch---hhhc
Confidence 754443 34568888887777766655444443333 321 23333221 11211 112333344554 3345
Q ss_pred cCCCcchhhHHhhcCCCCHHHH---------HHHHHHHHHHHHHHHHHhcccCCCCCCHhHH
Q 012005 380 REHNPSAVECYKNQHGVSEEEA---------VKALSLAVANSWKVINEELLLNPTAIPLPLL 432 (473)
Q Consensus 380 ~G~~~n~V~cyM~e~g~s~eeA---------~~~i~~~i~~~wk~ln~~~~l~~~~~p~~~~ 432 (473)
+|-+ =+=.-.|.++|+|.++- ..-+..+++.+..-+.+. .--...+|..+.
T Consensus 180 ~gR~-YlP~~~l~~~gv~~~dl~~~~~~~~~~~~~~~~~~~A~~~~~~a-~~~~~~lp~~~r 239 (294)
T 4hd1_A 180 LGRI-YVPRADLEQFGATLDDIRARRATDGVRRCIALEVDRAQALFDEG-RRLESLVPPRLA 239 (294)
T ss_dssp TTCB-CSCHHHHHTTTCCHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHH-GGGGGSSCHHHH
T ss_pred cCce-eCCHHHHHHcCCCHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHhCCHHHH
Confidence 5653 11123567889988752 233444455444444443 211245786554
No 19
>3ipi_A Geranyltranstransferase; isoprene biosynthesis, helical bundle, protein structure initiative II (PSI II), structural genomics, nysgxrc; 1.90A {Methanosarcina mazei}
Probab=71.58 E-value=17 Score=35.46 Aligned_cols=133 Identities=16% Similarity=0.084 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
...++.+-..+..|... .||.++|+..-..-+|.-...+. ..|. =-..+++..+. ..++-+..+...-+.||+
T Consensus 136 ~~~~~~GQ~~dl~~~~~--~~t~~~y~~~i~~KTg~L~~~a~-~~ga~lag~~~~~~~~---l~~~g~~lGlaFQI~DDi 209 (295)
T 3ipi_A 136 GMDMAEGEVLDLKLEDE--SFGENDYFKCIYKKTASLFAISA-SIGAYTGGAEEELAER---FSHFGNALGTAYQIVDDI 209 (295)
T ss_dssp HHHHHHHHHHHHC---------CHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccchHHHHccCC--CCCHHHHHHHHHhhhHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45677888888888654 48999999887665655433222 2221 01245555554 366778888888899999
Q ss_pred cchhhhh-----ccCCCcchhhHHhhcCCC--CHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCH-hHHHHHHHHhh
Q 012005 372 AGHKFEQ-----KREHNPSAVECYKNQHGV--SEEEAVKALSLAVANSWKVINEELLLNPTAIPL-PLLQVIFDLSC 440 (473)
Q Consensus 372 ~S~~kE~-----~~G~~~n~V~cyM~e~g~--s~eeA~~~i~~~i~~~wk~ln~~~~l~~~~~p~-~~~~~~ln~aR 440 (473)
..+.-.. ..|. .+...+|..+.+- ..+.|.+.+.+.++++.+.+. .+|. +-++...++++
T Consensus 210 lD~~~~~~gkd~~~gk-~Tlp~l~al~~~~~~~le~a~~~a~~~~~~A~~~L~--------~lp~~~~~~~L~~l~~ 277 (295)
T 3ipi_A 210 LEFLEVVEGKESKFTS-ETLPHIYMKSTSKEEALKKSIDCVKLHVAAAKETLE--------TFRECPARDKLFQITD 277 (295)
T ss_dssp HHHHHHHHC--------CCHHHHHTTTSCHHHHHHHHHHHHHHHHHHHHHHHT--------TSCCSHHHHHHHHHHH
T ss_pred HHhcCCccCCCcccCc-ccHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHH--------hCCCchHHHHHHHHHH
Confidence 8875432 2333 3666677655431 144455555555555554332 2443 34555555554
No 20
>3lmd_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, protein structure initiative, nysgrc; 1.90A {Corynebacterium glutamicum} PDB: 3q2q_A*
Probab=67.17 E-value=18 Score=36.36 Aligned_cols=79 Identities=20% Similarity=0.136 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCcc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIA 372 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~ 372 (473)
+..++.+...+..|..+. ||.++|++.-..-+|.....+...-++=-..+++..+.+ .++-+..+...-+.||+.
T Consensus 169 ~~~~~~GQ~ldl~~~~~~--~t~~~y~~~i~~KTg~L~~~a~~lga~laga~~~~~~~l---~~~g~~lG~aFQI~DDil 243 (360)
T 3lmd_A 169 FGELVTGQMRETVGPRDT--DPIEHYTNVIREKTGVLIASAGYLGAMHAGAAPEHIDAL---KNFGAAVGMIFQIVDDII 243 (360)
T ss_dssp HHHHHHHHHHHHHCCTTS--CHHHHHHHHHHHHTHHHHHHHHHHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCC--CCHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 567888989899997665 999999988766665554332211111012455555543 667788888888889988
Q ss_pred chhh
Q 012005 373 GHKF 376 (473)
Q Consensus 373 S~~k 376 (473)
.+.-
T Consensus 244 D~~~ 247 (360)
T 3lmd_A 244 DIFS 247 (360)
T ss_dssp HHHC
T ss_pred HccC
Confidence 7743
No 21
>1rtr_A Geranyltranstransferase; 2.50A {Staphylococcus aureus} SCOP: a.128.1.1
Probab=66.45 E-value=24 Score=34.35 Aligned_cols=112 Identities=8% Similarity=-0.001 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHH--HHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF--IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... .+|.++|+..-..-+|.....+... ...| .+++..+.+ .++-...+...-+.||+
T Consensus 148 ~~~~~GQ~~Dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DDi 220 (301)
T 1rtr_A 148 VGMVGGQMLDMQSEGQ--PIDLETLEMIHKTKTGALLTFAVMSAADIAN--VDDTTKEHL---ESYSYHLGMMFQIKDDL 220 (301)
T ss_dssp TTHHHHHHHHHHTTTS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 6678888888888654 7899999998776666543322211 1123 456655543 67788888889999999
Q ss_pred cchhhhh-ccCCC---------cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFEQ-KREHN---------PSAVECYKNQHGVSEEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 372 ~S~~kE~-~~G~~---------~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~ 418 (473)
..+.-.. .-|.. .+.+.++- .+.|.+.+.+.++++.+.+..
T Consensus 221 lD~~~d~~~~GK~~g~Dl~~gK~T~p~l~a------l~~a~~~a~~~~~~A~~~L~~ 271 (301)
T 1rtr_A 221 LDCYGDEAKLGKKVGSDLENNKSTYVSLLG------KDGAEDKLTYHRDAAVDELTQ 271 (301)
T ss_dssp HHHHHHHCC-------------CCHHHHHH------HHHHHHHHHHHHHHHHHHHHT
T ss_pred HHhcCCHHHhCCCcchHHHcCCCcHHHHHH------HHHHHHHHHHHHHHHHHHHHh
Confidence 8875432 11211 24444443 678888899999988887754
No 22
>3ts7_A Geranyltranstransferase; isoprenoid synthesis, farnesyl diphosphate synthase; 1.94A {Methylococcus capsulatus}
Probab=64.77 E-value=45 Score=32.92 Aligned_cols=110 Identities=9% Similarity=0.003 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc--CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM--GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~--g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... .||.++|+..-..-+|.-...+ +..|. +...+++..+.+ .++-+..+...-+.||+
T Consensus 158 ~~m~~GQ~lDl~~~~~--~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 231 (324)
T 3ts7_A 158 AGMVGGQAIDLASVGK--KLDLPGLENMHIRKTGALIRAS-VRLACLARPGLPAEQFDRL---DHYAKCIGLAFQIQDDI 231 (324)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHTTSTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC--CCCHHHHHHHHHhhHHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5678888888888653 7899999998555455443322 22322 221455555543 66777888888889998
Q ss_pred cchhhh-----------hccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFE-----------QKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVI 416 (473)
Q Consensus 372 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~l 416 (473)
..+.-. ..+|.. +.+.+| ..|.|.+..++.++++.+.+
T Consensus 232 LD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------gle~a~~~a~~~~~~A~~~L 280 (324)
T 3ts7_A 232 LDEESDTQTLGKTRGKDRDHNKP-NYPALL------GLSGAKEKAEEMHEAALESL 280 (324)
T ss_dssp HHHTCC---------------CC-CHHHHH------CHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 877432 122322 555554 47888888888888887643
No 23
>3p8l_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.00A {Enterococcus faecalis}
Probab=62.88 E-value=26 Score=34.26 Aligned_cols=112 Identities=12% Similarity=0.043 Sum_probs=69.9
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|.. ..||.++|...-..-+|.....+ +..| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 156 ~~~~~GQ~lDl~~~~--~~~t~~~y~~i~~~KTg~L~~~~-~~~ga~la-ga~~~~~~~l---~~~g~~lGlaFQI~DDi 228 (302)
T 3p8l_A 156 QGMVSGQMGDIEGEK--VSLTLEELAAVHEKKTGALIEFA-LIAGGVLA-NQTEEVIGLL---TQFAHHYGLAFQIRDDL 228 (302)
T ss_dssp TTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccC--CCCCHHHHHHHHHcCcHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 457778888888754 47899999987544444432222 1222 11 2355555543 66777888888889998
Q ss_pred cchhhh-----------hccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 372 AGHKFE-----------QKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 372 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
..+.-. ..+|.. +...++ ..+.|.+.+.+.++++.+.++..
T Consensus 229 lD~~~d~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~~~~~~~~A~~~L~~~ 280 (302)
T 3p8l_A 229 LDATSTEADLGKKVGRDEALNKS-TYPALL------GIAGAKDALTHQLAEGSAVLEKI 280 (302)
T ss_dssp HHTTC-----------------C-CHHHHH------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHhcCCC-cHHHHH------HHHHHHHHHHHHHHHHHHHHHhc
Confidence 877432 122222 444444 47999999999999998877653
No 24
>4f62_A Geranyltranstransferase; enzyme function initiative, structural genomics; 2.10A {Marinomonas SP}
Probab=61.39 E-value=24 Score=34.80 Aligned_cols=113 Identities=11% Similarity=-0.024 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|. +..||.++|+..-..-+|.-...+ +..| ++...+++..+.+ .++-+..+...-+.||+
T Consensus 151 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a-~~~Ga~lag~a~~~~~~~l---~~~g~~lGlAFQI~DDi 224 (317)
T 4f62_A 151 NGMITGQMIDLSSE--NKNISLAELEQMHVHKTGALIKAS-VRMGALSTGQVKPEQLAKL---DAYAHAIGLAFQVQDDI 224 (317)
T ss_dssp TTHHHHHHHHHHTS--SSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTCCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHHHhHHHHHhcc--CCCCCHHHHHHHHHhchHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 35778888888886 345899999998654444433222 2222 2222455555543 66778888888889998
Q ss_pred cchhhh-----------hccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 372 AGHKFE-----------QKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 372 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
..+.-. ..+|. .+.+.+| ..+.|.+.+++.++++.+.+...
T Consensus 225 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------gle~a~~~a~~~~~~A~~~L~~l 276 (317)
T 4f62_A 225 IDLTSDTETLGKTQFSDAEANK-ATYPKLL------GLDGAKALVVRLHEQAIAQISEF 276 (317)
T ss_dssp HHTC----------------CC-CCHHHHH------HHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HhccCChHhhCCCcchHHhcCC-CcHHHHH------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 877432 12222 2555554 37889999999999888876543
No 25
>3p8r_A Geranyltranstransferase; isoprenyl synthase, structural genomics, PSI, protein struct initiative, nysgrc; 2.50A {Vibrio cholerae} SCOP: a.128.1.1
Probab=60.36 E-value=27 Score=34.13 Aligned_cols=112 Identities=10% Similarity=0.014 Sum_probs=69.1
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|. +..||.++|+..-..-+|.....+ +..| ++...+++..+. ..++-+..+...-+.||+
T Consensus 158 ~~~~~GQ~lDl~~~--~~~~s~~~y~~i~~~KTa~L~~~~-~~~ga~lag~~~~~~~~~---l~~~g~~lG~aFQI~DDi 231 (302)
T 3p8r_A 158 QGMCLGQALDLAAE--NRLISLEELETIHRNKTGALMRCA-IRLGALAAGEKGRAMLPH---LDRYAEAVGLAFQVQDDI 231 (302)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHTTHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHhccCcHHHHHHH-HHHHHHHcCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 46777888888886 457899999998654444433322 2222 111123433333 366777788888888998
Q ss_pred cchhhhh-----------ccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFEQ-----------KREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 372 ~S~~kE~-----------~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~ 418 (473)
..+.-+. .+|.. +.+.+| ..+.|.+.+.+.++++.+.++.
T Consensus 232 lD~~~~~~~~GK~~g~Dl~egK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L~~ 282 (302)
T 3p8r_A 232 LDIISDTETLGKPQGSDQELNKS-TYPALL------GLEGAQQKAHTLLQEALLALEA 282 (302)
T ss_dssp HHHTTC---------------CC-CHHHHH------HHHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCCHHHhCCCcchHHhcCCc-hHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775321 22222 555444 3688888899988888876654
No 26
>3lsn_A Geranyltranstransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium, nysgxrc; HET: MSE; 1.35A {Pseudomonas fluorescens} PDB: 3lji_A* 3p41_A*
Probab=57.18 E-value=24 Score=34.54 Aligned_cols=112 Identities=9% Similarity=-0.056 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... .||.++|...-..-+|.....+ +..| ++...+++..+.+ .++-...+...-+.||+
T Consensus 152 ~~~~~GQ~lDl~~~~~--~~s~~~y~~i~~~KTg~L~~~~-~~~ga~lag~~~~~~~~~l---~~~g~~lGlaFQI~DDi 225 (304)
T 3lsn_A 152 AGMVGGQAIDLGSVGL--KLDQQALEYMHRHKTGALIEAS-VILGALASGRAEKGELKAL---QTYAQAIGLAFQVQDDI 225 (304)
T ss_dssp TTHHHHHHHHHHTTTC--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHHTTCCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hhHhHhHHHHHHccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHcCCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 3477888888888654 4899999988554444433222 1222 2221155555543 67778888888899999
Q ss_pred cchhhhh-ccCCC---------cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFEQ-KREHN---------PSAVECYKNQHGVSEEEAVKALSLAVANSWKVIN 417 (473)
Q Consensus 372 ~S~~kE~-~~G~~---------~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln 417 (473)
..+.-.. .-|.. .+.+.+| ..+.|.+..++.++++.+.++
T Consensus 226 lD~~~~~~~~GK~~g~Dl~egK~T~p~l~------~l~~a~~~a~~~~~~A~~~L~ 275 (304)
T 3lsn_A 226 LDVESDTATLGKRQGADIARDKPTYPALL------GLAAAKEYALELRDQALHALR 275 (304)
T ss_dssp HHHHHHHHHC------------CCHHHHH------CHHHHHHHHHHHHHHHHHHTT
T ss_pred HhccCChHHhCCCcccHHhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 8875431 12221 2555554 478888888888888876443
No 27
>3rmg_A Octaprenyl-diphosphate synthase; structural genomics, protein structure initiative, isoprene biosynthesis, transferase; 2.30A {Bacteroides thetaiotaomicron}
Probab=56.52 E-value=36 Score=33.68 Aligned_cols=80 Identities=15% Similarity=-0.056 Sum_probs=51.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCcc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIA 372 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~ 372 (473)
...++.+...+..|.. ...||.++|+..-..-+|.....+...-++--..+++..+. ...+-...+...-+.||+.
T Consensus 142 ~~~~~~GQ~ldl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~---l~~~g~~lG~aFQi~DD~l 217 (334)
T 3rmg_A 142 GQKLAEGELLQLSNVS-NHSFSEEVYFDVIRKKTAALFAACAEAAALSVQVGEEEVAF---ARLLGEYIGICFQIKDDIF 217 (334)
T ss_dssp HHHHHHHHHHHHHCCC-C--CCHHHHHHHHHHTHHHHHHHHHHHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC-CCCCCHHHHHHHHcCChHHHHHHHHHHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHhc
Confidence 5677888888888864 33589999999877666655433221111101245555554 3677788888888999988
Q ss_pred chhh
Q 012005 373 GHKF 376 (473)
Q Consensus 373 S~~k 376 (473)
.+..
T Consensus 218 d~~~ 221 (334)
T 3rmg_A 218 DYFD 221 (334)
T ss_dssp TTSC
T ss_pred cCCC
Confidence 8763
No 28
>3m0g_A Farnesyl diphosphate synthase; structural genomics, protein structure initiative, NYSGXRC, biosynthesis, transferase, PSI-2; 1.90A {Rhodobacter capsulatus} PDB: 3lvs_A
Probab=56.19 E-value=22 Score=34.61 Aligned_cols=111 Identities=15% Similarity=0.051 Sum_probs=66.6
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHH--HHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVA--SFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|...+..||.++|+..-..-+|.....+. .-...| .+++ ...++-...+...-+.||+
T Consensus 147 ~~~~~GQ~lDl~~~~~~~~~~~~~y~~i~~~KTg~L~~~~~~~ga~lag--~~~~------~l~~~g~~lG~aFQI~DDi 218 (297)
T 3m0g_A 147 EGMVYGQALDIAAETAAVPLTLDEIIRLQAGKTGALISFAAQAGAILAG--ADRG------PLTAYATALGLAFQIADDI 218 (297)
T ss_dssp TTHHHHHHHHHHHTTSSSCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH------HHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHhHHHHHHhhhcCCCCCHHHHHHHHccchHHHHHHHHHHHHHHcC--CCHH------HHHHHHHHHHHHHHHHHHH
Confidence 56888888899998667789999999975554544332211 111123 2333 1356777888888899999
Q ss_pred cchhhhh-ccCC-----C----cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFEQ-KREH-----N----PSAVECYKNQHGVSEEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 372 ~S~~kE~-~~G~-----~----~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~ 418 (473)
..+.-.. .-|. . .+.+.++ ..+.|.+..++.++++.+.+..
T Consensus 219 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~ 269 (297)
T 3m0g_A 219 LDVEGNEEAAGKRLGKDAEAHKATFVSLL------GLAGAKSRAADLVAEAEAALAP 269 (297)
T ss_dssp C---------------------CCHHHHH------CSSHHHHHHHHHHHHHHHHTGG
T ss_pred HhccCCHHHhCCCccchhhcCCccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 9885431 1222 1 2444444 3577888888888888876543
No 29
>3pde_A Farnesyl-diphosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative; HET: IPE; 1.75A {Lactobacillus brevis} PDB: 3m9u_A*
Probab=51.71 E-value=41 Score=32.93 Aligned_cols=111 Identities=11% Similarity=-0.032 Sum_probs=69.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|. +..||.++|...-..-+|.....+. ..| ++ ..+++..+. ..++-...+...-+.||+
T Consensus 155 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~~ga~la-ga~~~~~~~---l~~~g~~lGlaFQI~DDi 227 (309)
T 3pde_A 155 SGMVAGQAKDIQSE--HVNLPLSQLRVLHKEKTGALLHYAV-QAGLILG-QAPEAQWPA---YLQFADAFGLAFQIYDDI 227 (309)
T ss_dssp TTHHHHHHHHHHTT--TCCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCGGGHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcc--CCCCCHHHHHHHHHhccHHHHHHHH-HHHHHHc-CCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 45777888888875 3468999999885444444332222 222 12 235554443 366777788888888998
Q ss_pred cchhhh-----------hccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFE-----------QKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 372 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~ 418 (473)
..+.-. ..+|.. +.+.+| ..+.|.+..+++++++.+.+..
T Consensus 228 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~~~~~~~~a~~~l~~ 278 (309)
T 3pde_A 228 LDVVSSPAEMGKATQKDADEAKN-TYPGKL------GLIGANQALIDTIHSGQAALQG 278 (309)
T ss_dssp HHHHCC-----------CTTTSS-SHHHHH------CHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhccCCHHHhCCCccchhhcCCc-cHHHHH------HHHHhHHHHHHHHHHHHHHHHH
Confidence 877432 122222 444444 3688888999999988886654
No 30
>3lom_A Geranyltranstransferase; geranyltransferase, structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Legionella pneumophila subsp}
Probab=50.59 E-value=40 Score=33.09 Aligned_cols=112 Identities=8% Similarity=0.055 Sum_probs=70.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCC-CchHHHhhcccchHHHHHHHHHHHHhcCcc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDI-ASREIFEWEMSNPDIIIAAETIIRFLDDIA 372 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~-l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~ 372 (473)
..++.+...+..|... ..||.++|...-..-+|.-...+.....++.. .+++..+.+ .++-+..+...-+.||+.
T Consensus 158 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTg~L~~~a~~~a~lag~~a~~~~~~~l---~~~g~~lGlaFQI~DDil 233 (313)
T 3lom_A 158 SGMVSGQSLDLSELAK-SSVTEEQLREIHLLKTGKLILACFEMVLAAQHEVSEQIKSAL---RTYGKHIGLVFQMQDDYL 233 (313)
T ss_dssp TTHHHHHHHHHHTTTS-SCCCHHHHHHHHHHHTHHHHHHHHHHHHTTCSSCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHccCC-CCCCHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCCHHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4677888888888643 37899999988654444433322222223322 566665543 677788888888999988
Q ss_pred chhhhh-----------ccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHH
Q 012005 373 GHKFEQ-----------KREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVI 416 (473)
Q Consensus 373 S~~kE~-----------~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~l 416 (473)
.+.-.. .+|.. +.+.+| ..+.|.+.+++.++++.+.+
T Consensus 234 D~~gd~~~~GK~~g~Dl~~gK~-T~p~l~------~l~~a~~~a~~~~~~A~~~L 281 (313)
T 3lom_A 234 DLYAPTQILGKGRSSDQANQKT-TFATLF------NKQQLEEEIAVHYQIAMDSL 281 (313)
T ss_dssp HHHCC---------------CC-CHHHHS------CHHHHHHHHHHHHHHHHHTT
T ss_pred hccCCHHhhCCCCcchhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHH
Confidence 775321 22222 444443 47889888988888887644
No 31
>3uca_A Geranyltranstransferase; isoprenoid synthesis, isoprenoid diphosphate synthase; 2.00A {Clostridium perfringens}
Probab=50.44 E-value=44 Score=32.97 Aligned_cols=113 Identities=13% Similarity=0.027 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... ..||.++|...-..-+|.-...+ +..| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 180 ~~m~~GQ~lDl~~~~~-~~~t~~~y~~i~~~KTa~L~~~a-~~~Ga~la-ga~~~~~~~l---~~~g~~lGlAFQI~DDi 253 (324)
T 3uca_A 180 DGMIGGQIVDIINEDK-EEISLKELDYMHLKKTGELIKAS-IMSGAVLA-EASEGDIKKL---EGFGYKLGLAFQIKDDI 253 (324)
T ss_dssp TTHHHHHHHHHHTSSC-SSCCHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHHcCCC-CCCCHHHHHHHHhcchHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 4567788888888543 36899999998544444432222 2222 11 2455555543 66777888888889998
Q ss_pred cchhhh-----------hccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 372 AGHKFE-----------QKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 372 ~S~~kE-----------~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
..+.-. ..+|.. +...+| ..+.|.+.+++.++++.+.+...
T Consensus 254 LD~~gd~~~~GK~~g~Dl~egK~-T~p~l~------al~~a~~~a~~~~~~A~~~L~~l 305 (324)
T 3uca_A 254 LDVVGNAKDLGKNVHKDQESNKN-NYITIF------GLEECKKKCVNITEECIEILSSI 305 (324)
T ss_dssp HHHCCC------------------CHHHHH------CHHHHHHHHHHHHHHHHHHHHTS
T ss_pred HhccCCHHHhCCCcchHhhcCCc-cHHHHH------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 877432 122222 444444 47899999999999999877653
No 32
>2h8o_A Geranyltranstransferase; geranyltransferase,agrobacterium tumefaciens, structural GEN PSI-2, protein structure initiative; 1.60A {Agrobacterium tumefaciens}
Probab=50.29 E-value=40 Score=33.40 Aligned_cols=111 Identities=13% Similarity=0.018 Sum_probs=72.3
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHH--HHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF--IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... .+|.++|+..-..-+|......... ...| .+++..+.+ .++-...+...-+.||+
T Consensus 192 ~~~~~GQ~lDl~~~~~--~~~~~~y~~i~~~KTa~L~~~a~~~Ga~lag--a~~~~~~~l---~~~g~~lGlAFQI~DDi 264 (335)
T 2h8o_A 192 GGMAGGQALDLAAEKK--APDEDGIITLQAMKTGALLRFACEAGAIIAG--SNQAERQRL---RLFGEKIGLSFQLADDL 264 (335)
T ss_dssp TSHHHHHHHHHHHHHS--CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHccCC--CCCHHHHHHHHHhchHHHHHHHHHHHHHHhC--CCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5678888888888765 7899999998776666543322211 1123 456655543 67778888888899999
Q ss_pred cchhhhh-----------ccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFEQ-----------KREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 372 ~S~~kE~-----------~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~ 418 (473)
..+.-.. .+|. .+.+.+| ..|.|.+.+.+.++++.+.+..
T Consensus 265 LD~~gd~~~~GK~~g~Dl~egK-~T~p~l~------~le~a~~~a~~~~~~A~~~L~~ 315 (335)
T 2h8o_A 265 LDLTADAATMGKATGKDAARGK-GTLVALR------GEAWAREKLQEQVAEASELLAP 315 (335)
T ss_dssp HHHC-----------------C-CCHHHHH------CHHHHHHHHHHHHHHHHHHTGG
T ss_pred HHhcCCHHHhCCCcchHHhcCC-ccHHHHH------HHHHHHHHHHHHHHHHHHHHHh
Confidence 8775321 1222 2454444 2688889999999988876654
No 33
>3mzv_A Decaprenyl diphosphate synthase; transferase, structural genomics, PSI-2, protein structure initiative; 1.90A {Rhodobacter capsulatus}
Probab=47.84 E-value=1.2e+02 Score=29.98 Aligned_cols=78 Identities=13% Similarity=-0.098 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
....+.+-..+..|.. +..||.++|+..-..-+|.....+. ..|. --..+++..+. ..++-+..+...-+.||+
T Consensus 148 ~~~~~~GQ~~dl~~~~-~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~aFQI~DD~ 222 (341)
T 3mzv_A 148 SAVIAEGEVLQLTAAQ-NLATTEDIYLRVIRGKTAALFSAAT-EVGGIIGGAPEDQVQA---LFDYGDALGIAFQIVDDL 222 (341)
T ss_dssp HHHHHHHHHHHHHHTT-CTTCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567888888888864 3468999999886666655433222 2221 01245555544 366778888888888988
Q ss_pred cchh
Q 012005 372 AGHK 375 (473)
Q Consensus 372 ~S~~ 375 (473)
..+.
T Consensus 223 ld~~ 226 (341)
T 3mzv_A 223 LDYG 226 (341)
T ss_dssp HHC-
T ss_pred Hhcc
Confidence 8764
No 34
>3oyr_A Trans-isoprenyl diphosphate synthase; isoprenyl synthase, PSI, protein structure initiative; HET: IPE; 2.00A {Caulobacter crescentus}
Probab=46.53 E-value=77 Score=31.44 Aligned_cols=79 Identities=10% Similarity=-0.157 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
...++.+-..+..|.. +..||.++|+..-..-+|.....+. ..|+ --..+++..+. ..++-+..+...-+.||+
T Consensus 160 ~~~~~~GQ~~dl~~~~-~~~~~~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 234 (345)
T 3oyr_A 160 SRVIAEGEVLQLMRSH-DLNLSQAVYLEIIQAKTAELFAAAS-EAGAVSAGVDVAKSEA---LRDYGLNLGLAFQLADDA 234 (345)
T ss_dssp HHHHHHHHHHHHHTSS-CSSCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCC-CCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 4567788888888853 3458999999987766665533222 2221 01245655554 367778888888899999
Q ss_pred cchhh
Q 012005 372 AGHKF 376 (473)
Q Consensus 372 ~S~~k 376 (473)
..+.-
T Consensus 235 lD~~~ 239 (345)
T 3oyr_A 235 LDYGG 239 (345)
T ss_dssp TTC--
T ss_pred HhccC
Confidence 88753
No 35
>1wy0_A Geranylgeranyl pyrophosphate synthetase; pyrococcus horikosh structural genomics, riken structural genomics/proteomics initiative, RSGI; 2.20A {Pyrococcus horikoshii}
Probab=45.27 E-value=57 Score=32.18 Aligned_cols=77 Identities=14% Similarity=0.058 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHH--HHcCCCCchHHHhhcccchHHHHHHHHHHHHhcC
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF--IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDD 370 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ND 370 (473)
...++.+...+..|.... ..|.++|++.-..-+|.....+... ...| .+++..+.+ .++-...+...-+.||
T Consensus 146 ~~~~~~GQ~~dl~~~~~~-~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag--~~~~~~~~l---~~~g~~lG~aFQI~DD 219 (342)
T 1wy0_A 146 SNELCEGQARDLEFEKKS-TVTIEEYMEMISGKTGALFEASAKVGGIIGT--DNEEYIKAL---SSWGRNVGIAFQIWDD 219 (342)
T ss_dssp HHHHHHHHHHHHHHTTCS-CCCHHHHHHHHHHHTHHHHHHHHHHHHHHHC--CCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccCC-CCCHHHHHHHHHHhhHHHHHHHHHHHHHHcC--CCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 678888999999997643 3599999998776665554332211 1123 456655543 6778888888889999
Q ss_pred ccchh
Q 012005 371 IAGHK 375 (473)
Q Consensus 371 I~S~~ 375 (473)
+..+.
T Consensus 220 ~lD~~ 224 (342)
T 1wy0_A 220 VLDLI 224 (342)
T ss_dssp HHHHH
T ss_pred HHhcc
Confidence 98875
No 36
>1rqj_A Geranyltranstransferase; bisphosphonate, isoprenyl synthase; HET: IPR RIS; 1.95A {Escherichia coli} SCOP: a.128.1.1 PDB: 1rqi_A* 2for_A*
Probab=45.08 E-value=66 Score=31.12 Aligned_cols=114 Identities=9% Similarity=-0.055 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcC--CCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMG--DIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g--~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
..++.+...+..|... .+|.++|+..-..-+|.....+ ...|.- -..+++..+. ..++-...+...-+.||+
T Consensus 152 ~~~~~GQ~~dl~~~~~--~~~~~~y~~i~~~KTa~L~~~~-~~~ga~l~ag~~~~~~~~---l~~~g~~lG~aFQi~DD~ 225 (299)
T 1rqj_A 152 AGMCGGQALDLDAEGK--HVPLDALERIHRHKTGALIRAA-VRLGALSAGDKGRRALPV---LDKYAESIGLAFQVQDDI 225 (299)
T ss_dssp TTHHHHHHHHHHTTTT--CCCHHHHHHHHHHHTHHHHHHH-HHHHHHTTTHHHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhHHHHHhccCC--CCCHHHHHHHHHhhhHHHHHHH-HHHHHHHhCCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 5678888888888644 7899999998765555443322 222210 1134554444 367778888888899998
Q ss_pred cchhhhh-ccCCC---------cchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 372 AGHKFEQ-KREHN---------PSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 372 ~S~~kE~-~~G~~---------~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
..+.-.. .-|.. .+...+| ..+.|.+.+++.++++.+.+...
T Consensus 226 lD~~~~~~~~GK~~g~Dl~~gK~T~p~l~------~l~~a~~~~~~~~~~A~~~L~~l 277 (299)
T 1rqj_A 226 LDVVGDTATLGKRQGADQQLGKSTYPALL------GLEQARKKARDLIDDARQSLKQL 277 (299)
T ss_dssp HHHHSCHHHHSSCTTHHHHHTCCCHHHHH------CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCCHHHhCCChhhHHHcCCCcHHHHH------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 8875421 12221 2444444 25788899999999999888764
No 37
>3llw_A Geranyltranstransferase (ISPA); structural genomics, PSI, protein structure initiative, nysgrc; 2.30A {Helicobacter pylori} PDB: 3q1o_A*
Probab=41.13 E-value=51 Score=32.26 Aligned_cols=112 Identities=11% Similarity=0.089 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH---cCCCCchHHH-hhcccchHHHHHHHHHHHHhc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF---MGDIASREIF-EWEMSNPDIIIAAETIIRFLD 369 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~---~g~~l~~e~~-e~~~~~~~l~~~~~~i~RL~N 369 (473)
..++.+...+..|. +..||.++|+..-..-+|.....+. ..| .| .+++.. +.+ .++-+..+...-+.|
T Consensus 159 ~~m~~GQ~lDl~~~--~~~~t~~~y~~i~~~KTg~L~~~a~-~lga~lag--a~~~~~~~~l---~~~g~~lGlaFQI~D 230 (311)
T 3llw_A 159 KGMILGQALDCYFE--NTPLNLEQLTFLHEHKTAKLISASL-IMGLVASG--IKDEELFKWL---QAFGLKMGLCFQVLD 230 (311)
T ss_dssp TTHHHHHHHHHHTT--TSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHC--CCCHHHHHHH---HHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHhc--CCCCCHHHHHHHHHHhHHHHHHHHH-HHHHHHcC--CCHHHHHHHH---HHHHHHHHHHHHHHH
Confidence 46677877777775 5678999999885544444332221 222 13 344444 443 667778888888999
Q ss_pred Cccchhhh-hccCCCcchhhHHhhcCCCC------HHHHHHHHHHHHHHHHHHHHH
Q 012005 370 DIAGHKFE-QKREHNPSAVECYKNQHGVS------EEEAVKALSLAVANSWKVINE 418 (473)
Q Consensus 370 DI~S~~kE-~~~G~~~n~V~cyM~e~g~s------~eeA~~~i~~~i~~~wk~ln~ 418 (473)
|+..+.-. ..-|+.... ++...| .+.|.+..+++++++.+.+..
T Consensus 231 DiLD~~gd~~~~GK~~g~-----~~gK~T~p~l~~l~~a~~~~~~~~~~a~~~l~~ 281 (311)
T 3llw_A 231 DIIDVTQDEEESGKTTHL-----DSAKNSFVNLLGLERANNYAQTLKTEVLNDLDA 281 (311)
T ss_dssp HHHHHHC------------------CCSCHHHHHCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHhccCChHHHCccccc-----ccCcchHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99887643 233443211 233333 688888888888888876543
No 38
>2ftz_A Geranyltranstransferase; TM0161, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI; HET: MLY; 1.90A {Thermotoga maritima}
Probab=39.36 E-value=87 Score=30.14 Aligned_cols=113 Identities=12% Similarity=-0.032 Sum_probs=73.2
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHH--HHcCCCCchHHHhhcccchHHHHHHHHHHHHhcC
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASF--IFMGDIASREIFEWEMSNPDIIIAAETIIRFLDD 370 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~--~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ND 370 (473)
...++.+...+..|......||.++|+..-..-+|.....+... ...| .+++ . ..++-...+...-+.||
T Consensus 143 ~~~~~~GQ~ldl~~~~~~~~~~~~~y~~i~~~KTa~L~~~~~~~ga~lag--~~~~---~---l~~~g~~lG~aFQI~DD 214 (284)
T 2ftz_A 143 AYXLLLGEAMDVEFERRXMEVSQEMVERMYAFXTGALFAFCFSAPFILXG--XDHT---X---MXLLGEXFGVAFQIYDD 214 (284)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHT--CCCH---H---HHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhHHHHHhccCcCCCCHHHHHHHHHhhhHHHHHHHHHHHHHHhC--CChh---H---HHHHHHHHHHHHHHHHh
Confidence 47788888888999765547899999998766555543322111 1123 2333 1 35677788888889999
Q ss_pred ccchhhhh-ccCC-------CcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHHHh
Q 012005 371 IAGHKFEQ-KREH-------NPSAVECYKNQHGVSEEEAVKALSLAVANSWKVINEE 419 (473)
Q Consensus 371 I~S~~kE~-~~G~-------~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln~~ 419 (473)
+..+.-.. .-|. -.+...+| ..|.|.+.+.+.++++.+.+...
T Consensus 215 ~lD~~~d~~~~GK~~g~Dl~K~T~p~l~------~l~~a~~~a~~~~~~A~~~L~~l 265 (284)
T 2ftz_A 215 LXDILGSFEKVGKDLGKDTEXVTLVXXV------GIQXAREMADXYYEEVLXGIESE 265 (284)
T ss_dssp HHHHHHHCCCC-----------CHHHHH------CHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCHHhhCCCcchhccccchHHHH------HHHHHHHHHHHHHHHHHHHHHhC
Confidence 98886432 2333 12333333 37889999999999999877654
No 39
>3pko_A Geranylgeranyl pyrophosphate synthase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; HET: CIT; 1.98A {Lactobacillus brevis} PDB: 3n3d_A
Probab=37.50 E-value=1.2e+02 Score=29.70 Aligned_cols=95 Identities=14% Similarity=0.003 Sum_probs=56.1
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
...++.+-+.+..|.. +..||.++|++.-..-+|.....+ +..|+ --..+++..+.+ .++-+..+...-+.||+
T Consensus 152 ~~~~~~Gq~~dl~~~~-~~~~~~~~yl~~i~~KTa~L~~~~-~~~ga~lag~~~~~~~~l---~~~g~~lG~aFQi~DD~ 226 (334)
T 3pko_A 152 MHRILQGELHQMDLNY-REDITLDAYLNEIAGKTAELFALS-CYQGAQLAGAPQSVIDRT---RDIGIAIGCAYQMLDDI 226 (334)
T ss_dssp HHHHHHHHHHHHHTTT-CTTCCHHHHHHHHHHTTHHHHHHH-HHHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcc-CCCCCHHHHHHHHHcchHHHHHHH-HHHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 5567777777777753 346899999987655555543322 22221 012355555443 56677777778888888
Q ss_pred cchhh-----------hhccCCCcchhhHHhhc
Q 012005 372 AGHKF-----------EQKREHNPSAVECYKNQ 393 (473)
Q Consensus 372 ~S~~k-----------E~~~G~~~n~V~cyM~e 393 (473)
..+.- ...+|.. +...+|..+
T Consensus 227 ld~~~~~~~~GK~~g~Dl~egK~-Tlp~i~al~ 258 (334)
T 3pko_A 227 LDYAGDPKRTQKPVLEDLRSGVY-SLPLLLSLS 258 (334)
T ss_dssp HHHCSCTTSCCHHHHHHHHTTCC-CHHHHHHGG
T ss_pred HhccCChhhcCCCCCCccccCch-hHHHHHHHH
Confidence 76642 2334554 665565554
No 40
>3nf2_A Putative polyprenyl synthetase; isoprenyl diphosphate synthase, structural genomics, PSI, PR structure initiative, nysgrc; 2.20A {Streptomyces coelicolor}
Probab=33.80 E-value=3.5e+02 Score=26.58 Aligned_cols=78 Identities=12% Similarity=-0.057 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
...++.+...+..|..+ ..||.++|+..-..-+|.....+. ..|+ =-..+++..+.+ ..+-+..+...-+.||+
T Consensus 152 ~~~l~~GQ~~dl~~~~~-~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~lG~aFQi~DD~ 226 (352)
T 3nf2_A 152 SRSLIDGQAQDISYEHR-DRVSVEECLEMEGNKTGALLACAS-SIGAVLGGADERTADTL---EKYGYHLGLAFQAVDDL 226 (352)
T ss_dssp HHHHHHHHHHHHHHTTC-SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccC-CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHHHHHHHHHHHHH
Confidence 67788888888898654 368999999887666665543322 2221 012456655543 67778888888889998
Q ss_pred cchh
Q 012005 372 AGHK 375 (473)
Q Consensus 372 ~S~~ 375 (473)
..+-
T Consensus 227 ld~~ 230 (352)
T 3nf2_A 227 LGIW 230 (352)
T ss_dssp HHHH
T ss_pred Hhcc
Confidence 8764
No 41
>4dhd_A Polyprenyl synthetase; isoprenoid synthesis, isoprenoid diphosphate synthase, trans; 1.65A {Pyrobaculum calidifontis} PDB: 4gp1_A* 4gp2_A*
Probab=31.90 E-value=97 Score=30.82 Aligned_cols=79 Identities=14% Similarity=0.056 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHHhh----------cCC-CCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHH
Q 012005 293 FQELVMKYFCEAKWLN----------EGY-VPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIA 360 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~----------~g~-iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~ 360 (473)
...++.+...+..|.. .+. .||.++|+..-..-+|.....+. ..|. --..+++..+.+ .++-..
T Consensus 141 ~~~~~~GQ~ldl~~~~~~~~dp~~~~~~~~~~t~~~y~~~i~~KTa~L~~~~~-~~ga~lag~~~~~~~~l---~~~g~~ 216 (358)
T 4dhd_A 141 IKAIDEGERLDILFEAAGRSDPYFVQARWREVTLDDYIKMVSLKTGALIAAAA-KWGVLSVSDDRGLAEAA---WNFGMA 216 (358)
T ss_dssp HHHHHHHHHHHHHTBSSCCCCHHHHHTCCSCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHHCCCHHHHHHH---HHHHHH
T ss_pred HHHHHHHHHHHHHccccccccccccccCCCCCCHHHHHHHHHcchHHHHHHHH-HHHHHHcCCCHHHHHHH---HHHHHH
Confidence 5678888888899973 223 67999999986666665533322 2221 012455555443 667778
Q ss_pred HHHHHHHhcCccchh
Q 012005 361 AETIIRFLDDIAGHK 375 (473)
Q Consensus 361 ~~~i~RL~NDI~S~~ 375 (473)
.+...-+.||+..+.
T Consensus 217 lG~aFQI~DD~lD~~ 231 (358)
T 4dhd_A 217 AGVAFQIIDDVLDIY 231 (358)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhc
Confidence 888888888888764
No 42
>3npk_A Geranyltranstransferase; isoprene biosynthesis, SGX, structural genomics protein structure initiative; 1.50A {Campylobacter jejuni}
Probab=31.47 E-value=1.3e+02 Score=29.04 Aligned_cols=113 Identities=13% Similarity=0.016 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHc-CCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFM-GDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~-g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
....+.+...+..|.. ..||.++|...-..-+|.....+. ..|. --..+++..+. ..++-+..+...-+.||+
T Consensus 144 ~~~~~~GQ~lDl~~~~--~~~~~~~y~~i~~~KTg~L~~~a~-~~ga~laga~~~~~~~---l~~~g~~lGlaFQI~DDi 217 (291)
T 3npk_A 144 LNGMVIGQAIDCFFED--KRLSLNELEFLHTHKTARLIAAAL-KMGCEICELNNEESNQ---IYKLGLKLGLIFQINDDI 217 (291)
T ss_dssp TTTHHHHHHHHHHTTT--SCCCHHHHHHHHHHHTHHHHHHHH-HHHHHHTTCCHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC--CCCCHHHHHHHHHcccHHHHHHHH-HHHHHHcCCCHHHHHH---HHHHHHHHHHHHHHHHHH
Confidence 3456677777777753 578999999986544444433222 2221 01245555444 367778888888899999
Q ss_pred cchhhh-hccCCCc-------chhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 012005 372 AGHKFE-QKREHNP-------SAVECYKNQHGVSEEEAVKALSLAVANSWKVIN 417 (473)
Q Consensus 372 ~S~~kE-~~~G~~~-------n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln 417 (473)
..+.-. ..-|... +.+.++ ..+.|.+..+++++++.+.++
T Consensus 218 LD~~gd~~~~GK~~~~d~gK~T~p~l~------~l~~a~~~~~~~~~~a~~~l~ 265 (291)
T 3npk_A 218 IDVTTSQEQSGKPTNNDIHKNSFVNLL------GLEQAIKTKENLLNECEQDLE 265 (291)
T ss_dssp HHHC----------------CCHHHHH------CHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCChHHHCCccchhcCcchHHHHH------HHHHhHHHHHHHHHHHHHHHH
Confidence 887543 2233321 333222 368888888888888877654
No 43
>2qis_A Farnesyl pyrophosphate synthetase; trans-prenyltransferase, structural genomics, structural GEN consortium, SGC, transferase; HET: RIS; 1.80A {Homo sapiens} PDB: 4dem_F* 1yv5_A* 1yq7_A* 2opm_A* 2opn_A* 3cp6_A* 2rah_A* 2vf6_A* 1zw5_A* 3b7l_A* 3s4j_A* 3rye_A* 3n45_F* 2f89_F* 2f7m_F* 2f8z_F* 2f8c_F* 2f92_F* 2f9k_F* 3n1v_F* ...
Probab=28.76 E-value=4e+02 Score=26.42 Aligned_cols=80 Identities=14% Similarity=0.066 Sum_probs=53.2
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCChhhhhhhcccccchh-HHH--HHHHHHcCCCCchHHHhhcccchHHHHHHHHHH
Q 012005 293 FQELVMKYFCEAKWLNEGY----VPSMDEYKSVSLRSIDFL-PIA--VASFIFMGDIASREIFEWEMSNPDIIIAAETII 365 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~----iPtleEYl~~r~~S~g~~-~~~--~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~ 365 (473)
....+.+...+..|...+. .+|+++|+..-..-+|.. ... .+.-+..| ..+++..+.+ .++-...+...
T Consensus 185 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~i~~~KTa~Lsf~~~~~~ga~lag-~a~~~~~~~l---~~~g~~lG~aF 260 (374)
T 2qis_A 185 SYQTEIGQTLDLLTAPQGNVDLVRFTEKRYKSIVKYKSAFYSFYLPIAAAMYMAG-IDGEKEHANA---KKILLEMGEFF 260 (374)
T ss_dssp HHHHHHHHHHHHHHSCTTCCCGGGCCHHHHHHHHHHHTHHHHTHHHHHHHHHHTT-CCCHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccccccccCCHHHHHHHHHcCccHHHHHHHHHHHHHHcC-CCcHHHHHHH---HHHHHHHHHHH
Confidence 5667888888888876544 389999999877666554 221 12222223 1455655543 67788888888
Q ss_pred HHhcCccchhh
Q 012005 366 RFLDDIAGHKF 376 (473)
Q Consensus 366 RL~NDI~S~~k 376 (473)
-+.||+..+.-
T Consensus 261 QI~DDiLD~~g 271 (374)
T 2qis_A 261 QIQDDYLDLFG 271 (374)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHccC
Confidence 89999987743
No 44
>3fau_A NEDD4-binding protein 2; SMR, small-MUTS related domain, nicking endonuclease, alternative splicing, ATP-binding, coiled coil, cytoplasm, hydrolase; 1.90A {Homo sapiens} SCOP: d.68.8.1
Probab=27.38 E-value=49 Score=25.38 Aligned_cols=24 Identities=21% Similarity=0.335 Sum_probs=21.0
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHH
Q 012005 394 HGVSEEEAVKALSLAVANSWKVIN 417 (473)
Q Consensus 394 ~g~s~eeA~~~i~~~i~~~wk~ln 417 (473)
||++.+||+..+.+.+.+++....
T Consensus 6 HGl~v~eA~~~l~~~l~~~~~~~~ 29 (82)
T 3fau_A 6 HGLHVDEALEHLMRVLEKKTEEFK 29 (82)
T ss_dssp TTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHHHHHHhh
Confidence 799999999999999998886543
No 45
>2j1p_A Geranylgeranyl pyrophosphate synthetase; transferase, isoprene biosynthesis, multifunctional enzyme, carotenoid biosynthesis; HET: GRG; 1.8A {Sinapis alba} PDB: 2j1o_A 3kra_A 3krc_A* 3krf_A* 3kro_A* 3krp_A* 3oab_A* 3oac_A*
Probab=26.30 E-value=73 Score=30.76 Aligned_cols=109 Identities=13% Similarity=0.034 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhhcC-CCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcC
Q 012005 294 QELVMKYFCEAKWLNEG-YVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDD 370 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g-~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ND 370 (473)
..++.+...+..|...+ ..+|.++|...-..-+|.....+ +..| ++ ..+++..+.+ .++-...+...-+.||
T Consensus 160 ~~~~~GQ~~Dl~~~~~~~~~~~~~~y~~i~~~KTa~L~~~a-~~~ga~la-g~~~~~~~~l---~~~g~~lG~aFQI~DD 234 (293)
T 2j1p_A 160 EGLVAGQVVDISSEGLDLNNVGLEHLKFIHLHKTAALLEAS-AVLGGIIG-GGSDEEIERL---RKFARCIGLLFQVVDD 234 (293)
T ss_dssp TTHHHHHHHTTC---CCHHHHHHHHHHHHHHHHTHHHHHHH-HHHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCCCCCCCHHHHHHHHHcccHHHHHHH-HHHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHH
Confidence 35677777777775432 34689999988544344332221 1222 12 2456655543 6777888888889999
Q ss_pred ccchhhhhccCCCcchhhHHhhcCCCCHHHHHHHHHHHHHHHHHHHH
Q 012005 371 IAGHKFEQKREHNPSAVECYKNQHGVSEEEAVKALSLAVANSWKVIN 417 (473)
Q Consensus 371 I~S~~kE~~~G~~~n~V~cyM~e~g~s~eeA~~~i~~~i~~~wk~ln 417 (473)
+..+..+. -.+...++ ..+.|.+.+.+.++++.+.+.
T Consensus 235 iLD~~~~~----K~T~p~l~------gle~a~~~a~~~~~~A~~~L~ 271 (293)
T 2j1p_A 235 ILDVTKSS----KLTYPKLM------GLEKSREFAEKLNTEARDQLL 271 (293)
T ss_dssp HHHHHC------CCCHHHHH------HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHccCCc----cccHHHHH------HHHHHHHHHHHHHHHHHHHHH
Confidence 98886443 23555444 467888888888887776553
No 46
>3apz_A Geranyl diphosphate synthase; prenyltransferase, all alpha-helices fold, chroloplast, TRAN isoprenoid biosynthetic process; 2.60A {Arabidopsis thaliana} PDB: 3aq0_A*
Probab=25.11 E-value=1.3e+02 Score=29.55 Aligned_cols=80 Identities=16% Similarity=0.004 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHHcCCCCchHHHhhcccchHHHHHHHHHHHHhcCcc
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIFMGDIASREIFEWEMSNPDIIIAAETIIRFLDDIA 372 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI~ 372 (473)
...++.+-..+..|... ..+|.++|+..-..-+|.....+...-++--..+++..+.+ .++-...+...-+.||+.
T Consensus 162 ~~~~~~GQ~~dl~~~~~-~~~~~~~y~~~i~~KTa~L~~~~~~~ga~lag~~~~~~~~l---~~~g~~lG~aFQi~DD~l 237 (348)
T 3apz_A 162 VEHLVTGETMEITSSTE-QRYSMDYYMQKTYYKTASLISNSCKAVAVLTGQTAEVAVLA---FEYGRNLGLAFQLIDDIL 237 (348)
T ss_dssp HHHHHHHHHHHHTCCHH-HHTCHHHHHHHHHHHHTHHHHHHHHHHHHTTTCCHHHHHHH---HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccC-CCCCHHHHHHHHHcchHHHHHHHHHHHHHHcCcCHHHHHHH---HHHHHHHHHHHHHHHHHh
Confidence 45667777777666432 35799999998665555443322211111112355555443 667778888888899988
Q ss_pred chhh
Q 012005 373 GHKF 376 (473)
Q Consensus 373 S~~k 376 (473)
.+.-
T Consensus 238 D~~g 241 (348)
T 3apz_A 238 DFTG 241 (348)
T ss_dssp HHHT
T ss_pred hccC
Confidence 8754
No 47
>1wmw_A Geranylgeranyl diphosphate synthetase; GGPP, prenyl diphosphate synthase, structural genom riken structural genomics/proteomics initiative; 1.55A {Thermus thermophilus}
Probab=24.16 E-value=4.1e+02 Score=25.74 Aligned_cols=76 Identities=11% Similarity=0.184 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHHHH-hhcCCCCChhhhhhhcccccchh-HHHHH--HHHHcCCCCchHHHhhcccchHHHHHHHHHHHHh
Q 012005 293 FQELVMKYFCEAKW-LNEGYVPSMDEYKSVSLRSIDFL-PIAVA--SFIFMGDIASREIFEWEMSNPDIIIAAETIIRFL 368 (473)
Q Consensus 293 w~~~~~a~l~EA~W-~~~g~iPtleEYl~~r~~S~g~~-~~~~~--~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ 368 (473)
...++.+...+..| ..++..||.++|+..-..-+|.. ...+. .-...| .+++.. ..++-...+...-+.
T Consensus 139 ~~~~~~GQ~~dl~~~~~~~~~~~~~~y~~~i~~KTa~Ls~~~~~~~ga~lag--~~~~~~-----l~~~g~~lG~aFQi~ 211 (330)
T 1wmw_A 139 VRRTAYGQHLDLLWTLGGTFDLRPEDYFRMVAHKAAYYTAVAPLRLGALLAG--KTPPAA-----YEEGGLRLGTAFQIV 211 (330)
T ss_dssp HHHHHHHHHHHHHHHHSSSCCCCHHHHHHHHHHHTHHHHHHHHHHHHHHHTT--CCCCHH-----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHccccHHHHHHHHHHHHHHcC--CCHHHH-----HHHHHHHHHHHHHHH
Confidence 57788898999999 65435689999998876655554 22221 112223 233322 356777778888888
Q ss_pred cCccchh
Q 012005 369 DDIAGHK 375 (473)
Q Consensus 369 NDI~S~~ 375 (473)
||+..+.
T Consensus 212 DD~ld~~ 218 (330)
T 1wmw_A 212 DDVLNLE 218 (330)
T ss_dssp HHHHHHS
T ss_pred HccCccc
Confidence 8888774
No 48
>1uby_A FPS, farnesyl diphosphate synthase; transferase, isoprene biosynthesis, cholesterol biosynthesis; HET: DMA; 2.40A {Gallus gallus} SCOP: a.128.1.1 PDB: 1ubw_A* 1ubv_A* 1ubx_A* 1fps_A
Probab=23.95 E-value=3.6e+02 Score=26.65 Aligned_cols=80 Identities=15% Similarity=0.071 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhhcCC----CCChhhhhhhcccccchh-HH--HHHHHHHcCCCCchHHHhhcccchHHHHHHHHHH
Q 012005 293 FQELVMKYFCEAKWLNEGY----VPSMDEYKSVSLRSIDFL-PI--AVASFIFMGDIASREIFEWEMSNPDIIIAAETII 365 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~----iPtleEYl~~r~~S~g~~-~~--~~~~~~~~g~~l~~e~~e~~~~~~~l~~~~~~i~ 365 (473)
....+.+...+..|..++. .+|+++|+..-..-+|.. .. +.+.-+..|. .+++..+.+ .++-...+...
T Consensus 178 ~~~~~~GQ~lDl~~~~~~~~d~~~~t~~~y~~ii~~KTa~Lsf~~~~~~ga~lag~-~~~~~~~~l---~~~g~~lG~aF 253 (367)
T 1uby_A 178 AYQTELGQMLDLITAPVSKVDLSHFSEERYKAIVKYKTAFYSFYLPVAAAMYMVGI-DSKEEHENA---KAILLEMGEYF 253 (367)
T ss_dssp HHHHHHHHHHHHHHSCTTSCCCTTCCHHHHHHHHHHHTHHHHTHHHHHHHHHHHTC-CCHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccccccCCHHHHHHHHHhCchHHHHHHHHHHHHHHcCC-ccHHHHHHH---HHHHHHHHHHH
Confidence 5667888888899976553 579999999877655554 21 1122222231 355555543 67788888888
Q ss_pred HHhcCccchhh
Q 012005 366 RFLDDIAGHKF 376 (473)
Q Consensus 366 RL~NDI~S~~k 376 (473)
-+.||+..+.-
T Consensus 254 QI~DD~LD~~g 264 (367)
T 1uby_A 254 QIQDDYLDCFG 264 (367)
T ss_dssp HHHHHHHHHHC
T ss_pred HHHHHHHHhcC
Confidence 89999887753
No 49
>2ee7_A Sperm flagellar protein 1; all alpha protein, CH domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=23.91 E-value=74 Score=26.99 Aligned_cols=67 Identities=9% Similarity=0.216 Sum_probs=39.2
Q ss_pred HhhHHHHHHHHHHHHhhcccCCCh-hHHHhHHHHHH-HhhhhcccCCC------CcchhHHHHhHhhhhhhhhhhcc
Q 012005 185 AMHQKEASEITRWWRDLDFLKKLP-YIRERVVELYF-WMLVGVSYEPN------FSTGRIFLSKIICLETLVDDTFD 253 (473)
Q Consensus 185 ~~hq~El~~lsrW~~~~~l~~~l~-faRdr~~e~yf-~~~~~~~~eP~------~s~~Rl~~ak~~~l~~~~DD~fD 253 (473)
.+-.+|++++.+|..++.|..... ..|| +...|. .-++.. |.|+ |+.+.-.-+|..+|-++=--+|-
T Consensus 11 ~l~~ee~~el~~WL~~l~Ls~~~rn~rRD-FSdG~lvAEIl~~-y~Pk~Vdlh~y~~~~S~~~K~~NW~~ln~kvl~ 85 (127)
T 2ee7_A 11 SVDEEALHQLYLWVDNIPLSRPKRNLSRD-FSDGVLVAEVIKF-YFPKMVEMHNYVPANSLQQKLSNWGHLNRKVLK 85 (127)
T ss_dssp SCCHHHHHHHHHHHHHSCCSCCSSCHHHH-HTTSHHHHHHHHH-HCTTTCCCSSCCCCSSHHHHHHHHHHHHHHTTG
T ss_pred CCCHHHHHHHHHHHHcCCCCCCCCchhhh-ccchhHHHHHHHH-HCcCcccccccCCCCcHHHHHHhHHHHHHHHHH
Confidence 355789999999999999843332 4454 444444 221222 3365 44444455677777655434444
No 50
>3kra_B Geranyl diphosphate synthase small subunit; prenyltransferase, isoprene biosynthesis, isoprenyl pyrophosphate synthase, transferase; 1.90A {Mentha x piperita} PDB: 3krc_B* 3krf_B* 3kro_B* 3krp_B* 3oab_B* 3oac_B*
Probab=23.26 E-value=64 Score=30.89 Aligned_cols=71 Identities=13% Similarity=0.047 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcCc
Q 012005 294 QELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDDI 371 (473)
Q Consensus 294 ~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~NDI 371 (473)
...+.+...+..|..+ .||+++|...-..-+|.....+. ..| ++ ..+++..+.+ .++-+..+...-+.||+
T Consensus 149 ~~~~~GQ~lDl~~~~~--~~t~~~y~~~i~~KTa~L~~~a~-~lGaila-ga~~~~~~~l---~~~G~~lG~aFQI~DD~ 221 (274)
T 3kra_B 149 EGMISGLHREEEIVDG--NTSLDFIEYVCKKKYGEMHACGA-ACGAILG-GAAEEEIQKL---RNFGLYQGTLRGMMEMK 221 (274)
T ss_dssp TTHHHHHHHHTTCCTT--SSCHHHHHHHHHHHTHHHHHHHH-HHHHHHT-TCCHHHHHHH---HHHHHHHHHHHHHHHHT
T ss_pred HHHHHhHHHHHhccCC--CCCHHHHHHHHHHHHHHHHHHHH-HHHHHHc-CCCHHHHHHH---HHHHHHHHHHHHHHHhh
Confidence 4567777777777644 78999999865444444433222 222 12 2456555543 67788888888889997
No 51
>2azj_A Geranylgeranyl pyrophosphate synthetase; hexpps, trans-prenyltransferase; 2.40A {Sulfolobus solfataricus} PDB: 2azk_A
Probab=20.28 E-value=2.6e+02 Score=26.74 Aligned_cols=108 Identities=10% Similarity=-0.020 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHhhcCCCCChhhhhhhcccccchhHHHHHHHHH--cCCCCchHHHhhcccchHHHHHHHHHHHHhcC
Q 012005 293 FQELVMKYFCEAKWLNEGYVPSMDEYKSVSLRSIDFLPIAVASFIF--MGDIASREIFEWEMSNPDIIIAAETIIRFLDD 370 (473)
Q Consensus 293 w~~~~~a~l~EA~W~~~g~iPtleEYl~~r~~S~g~~~~~~~~~~~--~g~~l~~e~~e~~~~~~~l~~~~~~i~RL~ND 370 (473)
...++.+...+..| .++|++.-..-+|.....+. ..| ++ .+++..+.+ .++-...+...-+.||
T Consensus 144 ~~~~~~GQ~~dl~~--------~~~y~~~i~~KTa~L~~~a~-~~ga~la--~~~~~~~~l---~~~g~~lG~aFQi~DD 209 (289)
T 2azj_A 144 WKDTSVGALRDMYD--------NSDYIRTIELKTGSLFKLST-VLSAYAS--KHYNTKQQM---LDVGKYLGIIYQVIDD 209 (289)
T ss_dssp HHHHHHHHHHTTTT--------TSCHHHHHHHHTHHHHHHHH-HHHHHHT--TCGGGHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhh--------HHHHHHHHHcchHHHHHHHH-HHHHHHc--CCHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 45555565555443 68898876655555433222 222 23 455554443 6677778888888999
Q ss_pred ccchhhhh----ccCCCcchhhHHhhcCCCCHHHH-HHHHHHHHHHHHHHHHH
Q 012005 371 IAGHKFEQ----KREHNPSAVECYKNQHGVSEEEA-VKALSLAVANSWKVINE 418 (473)
Q Consensus 371 I~S~~kE~----~~G~~~n~V~cyM~e~g~s~eeA-~~~i~~~i~~~wk~ln~ 418 (473)
+..+.-+. ..|. .+...+| . ..+.++| ...+.+.++++.+.+..
T Consensus 210 ilD~~~~~K~dl~~gk-~Tlp~l~-~--~~g~~~a~~~~a~~~~~~A~~~L~~ 258 (289)
T 2azj_A 210 FVDYKTKKVEEIDGSA-KQLFKYY-R--EGKLEEYVRSVYLEYKQKYDELISN 258 (289)
T ss_dssp HHHHTTSCTTTCCTTG-GGGHHHH-T--TTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhhcCCCChhhhcCc-ccHHHHH-H--cCCHHHHHHHHHHHHHHHHHHHHHh
Confidence 88774321 1222 3666666 3 2345777 45577777777766543
Done!