BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 012006
         (473 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3HZJ|A Chain A, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
           Protein
 pdb|3HZJ|B Chain B, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
           Protein
 pdb|3HZJ|C Chain C, Crystal Structure Of The Rabgap Domain Of The Rabgap1l
           Protein
          Length = 310

 Score = 30.4 bits (67), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 29/109 (26%), Positives = 40/109 (36%), Gaps = 25/109 (22%)

Query: 358 GVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFR 417
           GV   LR EVW  L G   +D+      Y   I                       TK  
Sbjct: 33  GVPEALRAEVWQLLAG--CHDNQAXLDRYRILI-----------------------TKDS 67

Query: 418 ERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQ 466
            ++ +I +D+ RT  +  +F          L  I   YS Y+ D+GYCQ
Sbjct: 68  AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQ 116


>pdb|2QQ8|A Chain A, Crystal Structure Of The Putative Rabgap Domain Of Human
           Tbc1 Domain Family Member 14
          Length = 334

 Score = 28.9 bits (63), Expect = 6.0,   Method: Compositional matrix adjust.
 Identities = 30/123 (24%), Positives = 53/123 (43%), Gaps = 17/123 (13%)

Query: 352 KRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP---- 407
           + +++ G+   +R +VW+  +G    +       +  C+ ++     K +W+S+S     
Sbjct: 42  RDLWWQGIPPSVRGKVWSLAIGN---ELNITHELFDICLARA-----KERWRSLSTGGSE 93

Query: 408 ---EQARRFTKFRERK-GLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLG 463
              E A      RE    LI  D+ RT  ++  F     P   +L  IL  Y+ Y  D+G
Sbjct: 94  VENEDAGFSAADREASLELIKLDISRTFPNLCIFQ-QGGPYHDMLHSILGAYTCYRPDVG 152

Query: 464 YCQ 466
           Y Q
Sbjct: 153 YVQ 155


>pdb|2RHI|A Chain A, Crystal Structure Of The 3-mbt Domain From Human L3mbtl1
           In Complex With H1.5k27me2 At 1.66 Angstrom
 pdb|2RHX|A Chain A, Crystal Structure Of The 3-mbt Repeats From Human L3mbtl1
           Bound To Dimethyl-lysine
          Length = 345

 Score = 28.9 bits (63), Expect = 6.9,   Method: Compositional matrix adjust.
 Identities = 11/24 (45%), Positives = 17/24 (70%)

Query: 322 GKPRQPPLGSEEWTTFLDNEGRVM 345
           G P QPPLG  E ++ +D+ GR++
Sbjct: 320 GHPLQPPLGPREPSSAVDSSGRIV 343


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.135    0.400 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,515,780
Number of Sequences: 62578
Number of extensions: 546998
Number of successful extensions: 1294
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1292
Number of HSP's gapped (non-prelim): 7
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (25.0 bits)