Query 012006
Match_columns 473
No_of_seqs 283 out of 1312
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 07:37:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012006.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/012006hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1648 Uncharacterized conser 100.0 5.1E-49 1.1E-53 398.7 13.0 379 41-473 250-657 (813)
2 PF12068 DUF3548: Domain of un 100.0 2.8E-38 6E-43 300.1 14.4 148 42-189 3-200 (213)
3 KOG2224 Uncharacterized conser 100.0 2.4E-32 5.2E-37 274.1 16.8 145 327-473 403-549 (781)
4 KOG2058 Ypt/Rab GTPase activat 99.8 1.2E-20 2.5E-25 195.7 8.9 121 331-473 123-251 (436)
5 smart00164 TBC Domain in Tre-2 99.8 6.5E-20 1.4E-24 173.3 6.9 99 356-473 2-100 (199)
6 KOG2197 Ypt/Rab-specific GTPas 99.8 7E-20 1.5E-24 194.7 4.3 149 324-473 143-291 (488)
7 KOG2223 Uncharacterized conser 99.7 5.2E-17 1.1E-21 164.5 4.7 128 332-473 275-408 (586)
8 COG5210 GTPase-activating prot 99.6 1.4E-16 3.1E-21 171.3 7.2 129 327-473 179-310 (496)
9 KOG4567 GTPase-activating prot 99.6 2.8E-16 6.2E-21 154.0 7.0 138 333-473 11-199 (370)
10 KOG2222 Uncharacterized conser 99.5 2.3E-14 4.9E-19 146.6 6.5 112 342-473 154-265 (848)
11 PF00566 RabGAP-TBC: Rab-GTPas 99.4 2.6E-13 5.6E-18 128.8 4.1 98 361-473 1-98 (214)
12 KOG1092 Ypt/Rab-specific GTPas 99.3 2.4E-12 5.3E-17 130.9 4.8 120 344-472 175-294 (484)
13 KOG4347 GTPase-activating prot 99.3 5.7E-12 1.2E-16 134.1 6.8 119 331-472 173-294 (671)
14 KOG2221 PDZ-domain interacting 99.2 5.8E-12 1.3E-16 118.4 0.6 119 331-472 75-195 (267)
15 KOG4436 Predicted GTPase activ 99.1 2.8E-11 6.1E-16 130.8 4.5 124 331-473 549-675 (948)
16 KOG1091 Ypt/Rab-specific GTPas 99.0 1.3E-10 2.8E-15 122.0 3.9 108 362-473 28-157 (625)
17 KOG1102 Rab6 GTPase activator 99.0 2.2E-10 4.9E-15 119.9 5.7 105 346-473 134-238 (397)
18 KOG2197 Ypt/Rab-specific GTPas 98.2 1.1E-06 2.5E-11 94.2 4.6 85 323-407 42-126 (488)
19 KOG4436 Predicted GTPase activ 98.0 7.9E-06 1.7E-10 89.5 5.3 110 345-473 172-288 (948)
20 KOG1093 Predicted protein kina 97.5 0.00013 2.9E-09 77.7 5.9 103 342-473 340-442 (725)
21 KOG2595 Predicted GTPase activ 96.2 0.0031 6.8E-08 63.8 2.7 101 345-472 46-151 (395)
22 PF08567 TFIIH_BTF_p62_N: TFII 67.1 37 0.00079 27.5 7.6 65 64-142 12-78 (79)
23 PF14472 DUF4429: Domain of un 61.2 8.2 0.00018 32.3 2.9 32 104-135 27-59 (94)
24 COG1507 Uncharacterized conser 43.2 49 0.0011 30.1 5.0 31 110-141 20-53 (167)
25 PF04683 Proteasom_Rpn13: Prot 39.2 2.1E+02 0.0047 23.4 8.0 56 62-127 13-69 (85)
26 PF11605 Vps36_ESCRT-II: Vacuo 37.5 1.5E+02 0.0032 24.6 6.7 71 44-130 15-87 (89)
27 PRK03636 hypothetical protein; 30.4 53 0.0011 31.0 3.3 61 111-173 40-100 (179)
28 PF07024 ImpE: ImpE protein; 29.5 54 0.0012 29.0 3.0 30 106-135 30-63 (123)
29 PF08109 Antimicrobial14: Lact 28.0 22 0.00047 22.8 0.2 11 462-472 3-13 (31)
30 PF14844 PH_BEACH: PH domain a 26.3 58 0.0012 27.3 2.6 94 44-146 1-97 (106)
31 KOG3294 WW domain binding prot 24.3 2E+02 0.0043 28.4 6.0 57 101-157 69-132 (261)
32 PF08864 UPF0302: UPF0302 doma 24.3 35 0.00076 29.3 0.9 59 112-172 35-93 (106)
33 PRK03057 hypothetical protein; 23.5 82 0.0018 29.7 3.2 62 111-174 38-99 (180)
34 PF14470 bPH_3: Bacterial PH d 22.8 1E+02 0.0022 24.8 3.4 50 104-155 47-96 (96)
35 KOG2224 Uncharacterized conser 20.7 33 0.00071 36.4 -0.0 48 41-88 33-95 (781)
No 1
>KOG1648 consensus Uncharacterized conserved protein, contains RUN, BRK and TBC domains [General function prediction only]
Probab=100.00 E-value=5.1e-49 Score=398.70 Aligned_cols=379 Identities=18% Similarity=0.243 Sum_probs=291.6
Q ss_pred CCcEEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeee--eeCCCeeEEEeec
Q 012006 41 EGAELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRA--VPFTEVRSIRRHT 118 (473)
Q Consensus 41 ~~~~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~s--v~ls~I~SI~~~~ 118 (473)
++++|||+||+|.|+|.. +++.+||||+|+|-...++|+|+||++|+++...++.+++.||.++ |++.||.+||||+
T Consensus 250 sr~~llygkN~vlvqPk~-dmeavpgYlSLhq~ad~ltLKWtPNQLMngs~gds~~EksvyWdya~~i~~~~ivyiHcHQ 328 (813)
T KOG1648|consen 250 SRTRLLYGKNHVLVQPKS-DMEAVPGYLSLHQFADGLTLKWTPNQLMNGSSGDSSGEKSVYWDYAINIEMQDIVYIHCHQ 328 (813)
T ss_pred chhhhhcccccccccCch-hhhcccceeeHhhhhccceeecChHHhhcCCCCCccccceeeecceeeeehhheEEEEeec
Confidence 678999999999999986 8999999999999999999999999999999998999999999765 9999999999999
Q ss_pred CCCCceEEEEEeCCCCcCCceEeecCCh-HHHHHHHHhcccccccCCCCceEEEeCC---chhhhhhcccccCccccccC
Q 012006 119 PAFGWQYIIVVLSSGLAFPPLYFYTGGV-REFLATIKQHVLLVRSVEDANVFLVNDF---DNRLQRTLSSLELPRAVSIA 194 (473)
Q Consensus 119 p~~G~~yiii~~~dG~~~PpL~F~~GG~-~~FL~~L~~~~~l~rS~~dp~l~Lvn~~---~~~L~r~~s~~~~~~~~~~~ 194 (473)
......+++||.+||++.|||+|+.||| ..||+||++ ++|++.++||+||...+. .+.|++.-+....+..-.-.
T Consensus 329 q~eSggtlvlVsqdGiQrpPf~fP~GgHll~FLScLEn-GLlP~gqLdPPLW~q~gKgKvfPkLRKRS~~~s~~~~~~~~ 407 (813)
T KOG1648|consen 329 QDESGGTLVLVSQDGIQRPPFQFPAGGHLLAFLSCLEN-GLLPLGQLDPPLWVQTGKGKVFPKLRKRSTAVSNPAMEMGT 407 (813)
T ss_pred ccCCCCeEEEEecccccCCCccCCCCchhHHHHHHHHh-cCCcccccCCccccccCCcccchhhhhcCcccCCchhhcCc
Confidence 9866689999999999999999999999 799999988 999999999999999764 36776653222111100112
Q ss_pred CCCCCCcccC-CCCCcccccccCCC---------------CCCCCCCccccccc---ccCcCCChhhhhHHHHHHhHHHH
Q 012006 195 SGSSTPVSIG-DSPTNVNLERTNGG---------------LGHDSHSISQFHGR---QKQKAQDPARDISIQVLEKFSLV 255 (473)
Q Consensus 195 ~~~~~~~~~~-~~~~~~~~~~~d~~---------------~~~~~~s~~~~~~~---~~~~~~d~~~~~~~~~l~~~s~v 255 (473)
...++||+++ ++++..+....|-. ++..+.+|+...+. +.+++..++ .+...++ |
T Consensus 408 ~~atDYVFRiiypg~~~E~~p~D~~d~~~~~~~p~wh~~P~~ssc~scS~s~Sp~~~~s~~sc~~~-r~pl~ll-----C 481 (813)
T KOG1648|consen 408 GRATDYVFRIIYPGSGVEPAPEDIEDPLFGPSAPTWHSPPIHSSCNSCSLSNSPYIVDSVDSCVNF-RLPLGLL-----C 481 (813)
T ss_pred ccccceEEEEeecCCCCCCCchhhhccccCCCCcccCCCCcccccccccCCCCCCccccccccccc-cchHHHH-----H
Confidence 2357899886 55555443322210 12222334333221 122333344 3456776 9
Q ss_pred HHHHHHHHHHhhhccCCCCCcccccccccccccccCcCccccccccc---cCCCC-CCCcccccccccccCCCCCCCCCH
Q 012006 256 TKFARETTSQLFRENHSNGFGAFEKKFDSQSALDFDHKASYDTETIV---NEIPV-APDPVEFDKLTLVWGKPRQPPLGS 331 (473)
Q Consensus 256 T~~~r~~~~~~~~~~~~~g~~~~~r~~~~~~~~d~~~~~~~v~e~~~---~~~~l-~~~~~e~~~~~~~~~~~r~~plt~ 331 (473)
.+|.+|+++++| |||.+|||++ ++|+++.. +...+ |++|.+ ....||+
T Consensus 482 ~sMk~QI~sRAF-----YGWLaycRHL------------sTvRTHLsaLV~h~~~~pD~pcd-----------a~~glt~ 533 (813)
T KOG1648|consen 482 QSMKNQIMSRAF-----YGWLAYCRHL------------STVRTHLSALVDHKTLIPDDPCD-----------ASAGLTE 533 (813)
T ss_pred HHHHHHHHHHHH-----HHHHHHHHHH------------HHHHHHHHHHhcccccCCCCCCC-----------ccccccH
Confidence 999999999999 9999998764 34444432 22222 334432 2568999
Q ss_pred HHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhh
Q 012006 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQAR 411 (473)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~ 411 (473)
+.|+++... ..+.+-++.+..++||+....|+-+|+++++.+...++..+-+.........|.+..-.|.
T Consensus 534 ~~W~qy~~d--~t~~e~~~l~~~~~g~~e~~~r~~~~p~~~~~~~~g~~~~~~d~~e~~~s~~y~~~l~~~~-------- 603 (813)
T KOG1648|consen 534 KFWKQYRAD--PTIEEWRVLEAEVRGRDEEAFRAARAPKAASPVREGSCDVFEDPNEPTCSQHYDRNLITLF-------- 603 (813)
T ss_pred HHHHHHhcC--CchHHHHHHHHHHhcccHHHHhhcccccccccccccccchhcCCCccHHHHHHHHHHHHHH--------
Confidence 999999864 2444556666667999999999999999999999888887777777777888987665554
Q ss_pred hhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 412 RFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 412 ~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
+-..++|+||+.|++++..||.+.++ ++. +++.++|.-.|-+-||.|||+||+|
T Consensus 604 -----~~~~~~~~kd~e~~~~~~~~fs~~~~--les-~~~~~~~~~~~l~~~~~~~~~dl~~ 657 (813)
T KOG1648|consen 604 -----RANLHRIDKDVERCDRNLMFFSNKDN--LES-RRVMYTYVRRNLEEGYTQGMCDLLA 657 (813)
T ss_pred -----hhheeeecchhhhCcchheeecCCcc--hhh-heeeeeeeccccccccccchhhccC
Confidence 34567999999999999999998665 566 8899999999999999999999986
No 2
>PF12068 DUF3548: Domain of unknown function (DUF3548); InterPro: IPR021935 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes and is typically between 184 to 216 amino acids in length. The domain is found associated with PF00566 from PFAM and at the N terminus of GYP7 proteins.
Probab=100.00 E-value=2.8e-38 Score=300.11 Aligned_cols=148 Identities=31% Similarity=0.653 Sum_probs=129.2
Q ss_pred CcEEEEeeCceEEccCCcc----cCCCCceEEEEEeCCeeEEEEEecCCCCC-Cc-------------------------
Q 012006 42 GAELVYLKDNVTIHPTQFA----SERISGRLKLIKQGSSLFMTWIPYKGQNS-NT------------------------- 91 (473)
Q Consensus 42 ~~~lly~K~~V~vhpt~~~----~d~I~G~LsL~~~~~~~~l~W~P~~~~~~-~~------------------------- 91 (473)
.++|||+|+||||||++.. +++|||||+|++++++++|+|+|.++..+ +.
T Consensus 3 ~~kllfeKsgVyIHps~~~~~~~d~~IpGfL~Ivek~~~~~l~w~P~e~~~d~s~~l~s~~d~ss~~~~~~~~~~~~~e~ 82 (213)
T PF12068_consen 3 SVKLLFEKSGVYIHPSASKHSDQDDNIPGFLRIVEKDSEVLLEWSPSEDSSDASQVLYSWKDSSSVVESDETDFDSGYEP 82 (213)
T ss_pred cceEEEEeCCEEEcCCccccCcccccCCeEEEEEEeCCCcccccCCcccccCcchheecccCccccccccccccCCCcCC
Confidence 5799999999999999977 79999999999999999999999887411 10
Q ss_pred -c--cc----------------ccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHH
Q 012006 92 -R--LS----------------EKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLAT 152 (473)
Q Consensus 92 -~--~~----------------~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~ 152 (473)
+ .+ ..+....|+|+|||+||+||++++|++|||||+|+++||+.+||||||+||.++||++
T Consensus 83 dw~~vnt~~~~~~~~s~~~~s~~~~~~~~~aFsv~lsdl~Si~~~~p~~G~~~lv~~~kdG~~~p~L~Fh~gg~~~fl~~ 162 (213)
T PF12068_consen 83 DWAVVNTVSKKKRLHSSSPASSPSSSRSSYAFSVPLSDLKSIRVSKPSLGWWYLVFILKDGTSLPPLHFHDGGSKEFLKS 162 (213)
T ss_pred CcccccCCCCccccCCCCCCCCCcCCCcceEEEEEhhheeeEEecCCCCCceEEEEEecCCCccCceEEecCCHHHHHHH
Confidence 0 00 0001123479999999999999999999999999999999999999999999999999
Q ss_pred HHhcccccccCCCCceEEEeCCc-hhhhhhcccccCcc
Q 012006 153 IKQHVLLVRSVEDANVFLVNDFD-NRLQRTLSSLELPR 189 (473)
Q Consensus 153 L~~~~~l~rS~~dp~l~Lvn~~~-~~L~r~~s~~~~~~ 189 (473)
|++|+.|.||+.|+++|||++.. ++|+++|+.|++++
T Consensus 163 L~~~v~l~~S~~D~~~~lv~~~~s~aL~~S~~~L~lf~ 200 (213)
T PF12068_consen 163 LQRYVTLARSPRDSNLYLVNDHNSEALSQSFSELQLFD 200 (213)
T ss_pred HHhhEEEeecCCCCcEEEEECCCchHHHHHHHHhhccc
Confidence 99999999999999999999987 89999999887663
No 3
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=100.00 E-value=2.4e-32 Score=274.07 Aligned_cols=145 Identities=41% Similarity=0.781 Sum_probs=131.4
Q ss_pred CCCCHHHHHH-hhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh-c
Q 012006 327 PPLGSEEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ-S 404 (473)
Q Consensus 327 ~plt~~~W~~-~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~-~ 404 (473)
..|+-..|-. .++..|.+.+.-+||+.||.|||+.++|++||+|||.+|...||.++|++++..++.+|.++.++-. +
T Consensus 403 kki~~n~~~~t~lne~gqiedd~~lrk~iffggid~sir~evwpfllk~ys~est~edr~al~~~krkey~eiqqkrlys 482 (781)
T KOG2224|consen 403 KKIGTNAFLGTHLNEKGQIEDDLKLRKAIFFGGIDKSIRGEVWPFLLKCYSFESTFEDRAALMDIKRKEYEEIQQKRLYS 482 (781)
T ss_pred hhhhHHHHHHhhhhhcccchhHHHhhhhheeccchhhhhcchhHHHHHHhccccchhHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3556667766 7888899988889999999999999999999999999999999999999999999999999876554 6
Q ss_pred CChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 405 ISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 405 ~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
+++++...| |+...-.++|||.||||+++||.+++|||.+.|+|||+.||+|||.+||.|||+||+|
T Consensus 483 mspeeh~~f--wknvq~tvdkdvvrtdrnn~ff~gddnpn~e~mk~illn~avyn~~m~ysqgmsdlla 549 (781)
T KOG2224|consen 483 MSPEEHIAF--WKNVQFTVDKDVVRTDRNNPFFCGDDNPNTESMKNILLNFAVYNPAMGYSQGMSDLLA 549 (781)
T ss_pred CCHHHHHHH--HhheEEEEecceeeccCCCCcccCCCCCcHHHHHHHHHhheeecccccccccchhhcc
Confidence 788776666 6666778999999999999999999999999999999999999999999999999987
No 4
>KOG2058 consensus Ypt/Rab GTPase activating protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.82 E-value=1.2e-20 Score=195.70 Aligned_cols=121 Identities=26% Similarity=0.338 Sum_probs=94.2
Q ss_pred HHHHHHhhhcc-------CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006 331 SEEWTTFLDNE-------GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (473)
Q Consensus 331 ~~~W~~~~~~~-------g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~ 403 (473)
...|..++..+ --+...+++|+.| |+|||+++|+.||..+.|.+. ....++.|+++++.-.
T Consensus 123 ~~~~~l~~~~~~~~~~~~~~~~~s~elk~li-RkGiP~~~R~~VW~~~~g~~~-----------~~~~~~~yq~ll~~~~ 190 (436)
T KOG2058|consen 123 QLRWELELQSNIKLHSPNDFPPRSDELKRLI-RKGIPPELRGEVWWVLSGARR-----------QLNYPGYYQELLRKGD 190 (436)
T ss_pred HHHHHHHhhhhhcccccccccCCcHHHHHHH-HcCCChhhhhHHHHHHhcchh-----------hccCchhHHHHHhcCC
Confidence 35566665542 1124578999999 999999999999999999421 1122788888875422
Q ss_pred cCChhHhhhhhhccccccccccccccCCCCC-cccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~-~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
... .....+|+.|+.||||++ +.|..++..++..|+|||+||++|||.||||||||+|+|
T Consensus 191 ~~~----------~~~~~qI~~DL~RTfP~n~~~~~~~~~~~~~~LrRvL~Aya~hNp~vGYCQGmNflAa 251 (436)
T KOG2058|consen 191 EKK----------SPVVKQIKLDLPRTFPDNFKGFDSEDSDGRQTLRRVLLAYARHNPSVGYCQGMNFLAA 251 (436)
T ss_pred Ccc----------chHHHHHHhccccccCCCcccCCCCCchHHHHHHHHHHHHHhhCCCCcchhhHHHHHH
Confidence 110 023568999999999999 899988887789999999999999999999999999986
No 5
>smart00164 TBC Domain in Tre-2, BUB2p, and Cdc16p. Probable Rab-GAPs. Widespread domain present in Gyp6 and Gyp7, thereby giving rise to the notion that it performs a GTP-activator activity on Rab-like GTPases.
Probab=99.80 E-value=6.5e-20 Score=173.27 Aligned_cols=99 Identities=29% Similarity=0.481 Sum_probs=83.5
Q ss_pred cCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccccccccCCCCCc
Q 012006 356 YGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVT 435 (473)
Q Consensus 356 ~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~ 435 (473)
++|||+++|++||+.++|+.+...+ ..+..|.++++++...... ...+|++||.||+|+++
T Consensus 2 ~~Gip~~~R~~vW~~ll~~~~~~~~---------~~~~~Y~~l~~~~~~~~~~----------~~~~I~~Dv~Rt~~~~~ 62 (199)
T smart00164 2 RKGVPPSLRGVVWKLLLNAQPMDTS---------ADKDLYSRLLKETAPKDKS----------IVHQIEKDLRRTFPEHS 62 (199)
T ss_pred CCCCCHHHHHHHHHHHhCCchhhhc---------ccchHHHHHHHhhcCCChh----------hHHHHhcccCCCCCCch
Confidence 7899999999999999999864321 1367999998776432211 24589999999999999
Q ss_pred ccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 436 FFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 436 ~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
+|+..++++++.|++||.+|+.+||++||||||++|+|
T Consensus 63 ~f~~~~~~~~~~L~~IL~~~~~~~p~~gY~QGm~~i~~ 100 (199)
T smart00164 63 FFQDKEGPGQESLRRVLKAYALYNPEVGYCQGMNFLAA 100 (199)
T ss_pred hhcCCCcccHHHHHHHHHHHHHHCCCCceeccHHHHHH
Confidence 99987778899999999999999999999999999986
No 6
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=99.78 E-value=7e-20 Score=194.70 Aligned_cols=149 Identities=48% Similarity=0.802 Sum_probs=132.7
Q ss_pred CCCCCCCHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006 324 PRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (473)
Q Consensus 324 ~r~~plt~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~ 403 (473)
.+.+.++.++|......+|++......+..+|++|+-+.+|+++|++++++++|+.+..||..+... ...|.+++.+|.
T Consensus 143 ~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~k~qW~ 221 (488)
T KOG2197|consen 143 NRSPSLTLEEYNSNAMREGRLDESVHQRERIFSGGLSKSLRAEVWKFLLDYSPWDSTTRERVSLRKL-TDEYFRLKLQWS 221 (488)
T ss_pred CCCCcchhhhhhhhhhhccccccchhhhheecccccccchhhhhhhhhhcccCcccccccccccccc-cccHhhhhhhhe
Confidence 4566689999999998889886666666699999998899999999999999999999999888777 999999999999
Q ss_pred cCChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
.....+......+.+....|.|||.||||.+.+|.+++++++..|.+||.+|++||+++||||||+|+++
T Consensus 222 ~~~~~~~~~~~~~~~~~~~i~~dv~rtDr~~~~~~~~~n~~~~~l~~iL~ty~~~~~d~GY~QgmSDlls 291 (488)
T KOG2197|consen 222 STSPEQSPESEGYLERKSRIEKDVGRTDRSLEFYEGEENPHLARLVDILLTYAVYDFDLGYCQGMSDLLS 291 (488)
T ss_pred eccccccccccchhhhhhhhhhhccccchhhhhhhcccccCHHHHHHHHhhcccccCccccccCchhhcC
Confidence 9877766544446677789999999999999999998888899999999999999999999999999975
No 7
>KOG2223 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=99.66 E-value=5.2e-17 Score=164.45 Aligned_cols=128 Identities=22% Similarity=0.359 Sum_probs=93.8
Q ss_pred HHHHH-hhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHH-----hhcC
Q 012006 332 EEWTT-FLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ-----WQSI 405 (473)
Q Consensus 332 ~~W~~-~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~-----w~~~ 405 (473)
..|.. ++-+|..+.....++.++ +.|||+.+|++||-...|.. .+.| .+.|...+.+ |+..
T Consensus 275 ~vW~~eILpnWe~m~~SrR~relW-wQGiP~~VRGkvW~laIGNe-l~it-----------~elfd~~la~Aker~ak~~ 341 (586)
T KOG2223|consen 275 NVWENEILPNWEDMLKSRRVRELW-WQGIPPSVRGKVWSLAIGNE-LNIT-----------YELFDIALARAKEREAKSL 341 (586)
T ss_pred HHHHHHhccchHHHHhhHHHHHHH-HccCChhhcchhhHhhhCcc-cccC-----------HHHHHHHHHHHHHHHHHHH
Confidence 45654 455566666778888887 99999999999999999983 2333 2334333222 3332
Q ss_pred ChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 406 SPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 406 ~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
.+.....-...+....+|+.|+.||||+..+|+. ++|....|..||.+|++|.||+||||||++|+|
T Consensus 342 aeq~~~sa~~re~sv~~i~LDisrTfpsl~iFqk-~GPy~d~L~~lL~AYt~yRpDvgYVqgmSFIaA 408 (586)
T KOG2223|consen 342 AEQMSNSAADREASVELIKLDISRTFPSLSIFQK-GGPYHDDLHSLLGAYTCYRPDVGYVQGMSFIAA 408 (586)
T ss_pred HhhcccchhhhhcchhheeechhccCcceeeecc-CCchHHHHHHHhhhheeecCccccccchHHHHH
Confidence 2111001122345677999999999999999996 678899999999999999999999999999986
No 8
>COG5210 GTPase-activating protein [General function prediction only]
Probab=99.65 E-value=1.4e-16 Score=171.29 Aligned_cols=129 Identities=26% Similarity=0.385 Sum_probs=101.8
Q ss_pred CCCCHHHHHHhhhccCC-c--CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhh
Q 012006 327 PPLGSEEWTTFLDNEGR-V--MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQ 403 (473)
Q Consensus 327 ~plt~~~W~~~~~~~g~-~--~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~ 403 (473)
.+.....|.++++..+. . ....+++.+| +.|||+++|+.||.+++|++++.. .....|..+.....
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~gip~~~r~~vw~~~~~~~~~~~----------~~~~~y~~~~~~~~ 247 (496)
T COG5210 179 ELAADKLWISYLDPNPLSFLPVQLSKLRELI-RKGIPNELRGDVWEFLLGIGFDLD----------KNPGLYERLLNLHR 247 (496)
T ss_pred hhHHHHHHHHHHhcccchhhhhhHHHHHHHH-HhcCChHhhhhhHHHHhccchhhc----------cCchHHHHHHHHHH
Confidence 56678889999988776 2 5778999999 778999999999999999987543 24556666554322
Q ss_pred cCChhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 404 SISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 404 ~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
..... .....++|++||.||+|.+..|..+.+.+.+.|++||.+|++|||++|||||||+|+|
T Consensus 248 ~~~~~-------~~~~~~~i~~Dl~rt~~~~~~f~~~~s~~~~~L~rvL~ays~~~p~vgY~QgMn~l~a 310 (496)
T COG5210 248 EAKIP-------TQEIISQIEKDLSRTFPDNSLFQTEISIRAENLRRVLKAYSLYNPEVGYVQGMNFLAA 310 (496)
T ss_pred hcCCC-------cHHHHHHHHccccccccccccccCcccccHHHHHHHHHHHHhcCCCCceeccHHHHHH
Confidence 21110 0024679999999999999999987776556799999999999999999999999986
No 9
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=99.63 E-value=2.8e-16 Score=153.98 Aligned_cols=138 Identities=27% Similarity=0.376 Sum_probs=98.9
Q ss_pred HHHHhhhccCCcCChHHHHHHhhcCCCC--hhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhc------
Q 012006 333 EWTTFLDNEGRVMDSNALRKRIFYGGVD--HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQS------ 404 (473)
Q Consensus 333 ~W~~~~~~~g~~~~~~~lk~~If~~GIp--~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~------ 404 (473)
..+..+..-...++.+++|+.. ..|+| .++|+.+|+.|||++|.+.+.+ ....++++..|..++.+-..
T Consensus 11 ~~edvl~~~~~~id~kelr~~~-~~g~p~~~~lR~~~WkllL~Yl~~er~~w--~s~La~~R~~Y~q~i~e~v~epg~~~ 87 (370)
T KOG4567|consen 11 SIEDVLNPADDTIDLKELRKLC-FYGVPDDASLRPLVWKLLLGYLPPERSKW--TSFLAKKRSLYKQFIEEIVDEPGKKD 87 (370)
T ss_pred hHHHhhccccchhhHHHHHHHh-hcCCCCccchhHhHHHHHHhhcChhhhhh--HHHHHHHHHHHHHHHHHhccCccccc
Confidence 3444454434447889999998 67898 6899999999999999766554 44566778899888765321
Q ss_pred ----CCh--------------hHhhhhhhccccccccccccccCCCCCcccCCCCC-h----------------------
Q 012006 405 ----ISP--------------EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDN-P---------------------- 443 (473)
Q Consensus 405 ----~~~--------------~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~-~---------------------- 443 (473)
+.. ..+..|-+-.+...||+|||.||.|...||..... |
T Consensus 88 ~~~~v~~~D~~~dhPls~~~~sdwn~ff~d~e~l~QIdrDvrr~~pdi~ff~~~~~~p~~~~~~~~~~i~~~q~~~~n~~ 167 (370)
T KOG4567|consen 88 NSKKVDSNDTDEDHPLSLGPTSDWNTFFKDCEVLLQIDRDVRRTHPDISFFQLASSYPCRQGMDSRRRINASQEAGRNRL 167 (370)
T ss_pred cccccccCcccccCCCCCCchhhHHHHhhhhHHHHHHHHHHHHhCcchHhhhhccccccccchhhHhhhhhhhHhhhccc
Confidence 100 00112222235677999999999999999986321 1
Q ss_pred --hHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 444 --NVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 444 --~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
......+||+.||..||.||||||||+|+|
T Consensus 168 gl~~~~~erilfiyAKLNpGi~YVQGMNEIla 199 (370)
T KOG4567|consen 168 GLTRFAAERILFIYAKLNPGIGYVQGMNEILA 199 (370)
T ss_pred chhhhHHHHHHHHHhhcCCcchHHhhhHHHhh
Confidence 112357899999999999999999999987
No 10
>KOG2222 consensus Uncharacterized conserved protein, contains TBC, SH3 and RUN domains [Signal transduction mechanisms; General function prediction only]
Probab=99.50 E-value=2.3e-14 Score=146.58 Aligned_cols=112 Identities=25% Similarity=0.386 Sum_probs=93.1
Q ss_pred CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccc
Q 012006 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (473)
Q Consensus 342 g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~ 421 (473)
|-....++++.++-.||||+++|..+|+.|.|... .++.....|..+.+++...... .-.
T Consensus 154 ~~~~ktdk~~~llkeggiphslr~~lw~rlsga~~----------kkk~ae~sy~~ilk~~andk~~----------~~~ 213 (848)
T KOG2222|consen 154 GMELKTDKFEELLKEGGIPHSLRAFLWMRLSGALA----------KKKDAETSYEDILKACANDKLM----------IGK 213 (848)
T ss_pred ccccchHHHHHHHHcCCCCcchhHHHHHHhhhhhh----------hhccccccHHHHHHHhcccccc----------hhH
Confidence 44567889999998889999999999999999842 2233456788887766542211 235
Q ss_pred ccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 422 ~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
||+||+.|+.|++..|..+++.++..|++||.+.++.-|++||||||.-|+|
T Consensus 214 qiekdllr~lpnn~cf~k~n~~gi~~lrrilk~ia~ifpdigycqg~gviva 265 (848)
T KOG2222|consen 214 QIEKDLLRILPNNACFSKKNGEGIEALRRILKCIAFIFPDIGYCQGMGVIVA 265 (848)
T ss_pred HHHHHHHHhCCCcceeeCCCCcchHHHHHHHhhheeecCCcccccCccHHHH
Confidence 8999999999999999999999999999999999999999999999998875
No 11
>PF00566 RabGAP-TBC: Rab-GTPase-TBC domain; InterPro: IPR000195 Identification of a TBC domain in GYP6_YEAST and GYP7_YEAST, which are GTPase activator proteins of yeast Ypt6 and Ypt7, imply that these domains are GTPase activator proteins of Rab-like small GTPases [].; GO: 0005097 Rab GTPase activator activity, 0032313 regulation of Rab GTPase activity, 0005622 intracellular; PDB: 2G77_A 1FKM_A 3HZJ_A 3QYE_A 2QFZ_A 3QYB_A 2QQ8_A 3DZX_A 3QWL_A.
Probab=99.37 E-value=2.6e-13 Score=128.82 Aligned_cols=98 Identities=34% Similarity=0.518 Sum_probs=63.6
Q ss_pred hhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccccccccCCCCCcccCCC
Q 012006 361 HKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGD 440 (473)
Q Consensus 361 ~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~ 440 (473)
+++|+.||+.|+|..+ .. ...|...+.++...............+...+|++||.||+++...+.
T Consensus 1 ~~~R~~vW~~ll~~~~----~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~I~~Dv~rt~~~~~~~~-- 65 (214)
T PF00566_consen 1 HSLRGQVWKILLGIEP----NY---------SNNYQDEKNQWEQIESKSSNSNKLDNKIFEQIDKDVNRTFPNSFLFK-- 65 (214)
T ss_dssp -CCHHHHHHHHCTCSC----HH---------HHHHHHHHHHHHHHHHHHHHCTSTCHTCHHHHHHHHCTSSTSCCCST--
T ss_pred CChHHHHHHHHHccch----hh---------hhhHHHHhhhhhhhhHHHHHhccccchHHHHHHHhhhhhcccchhhh--
Confidence 3689999999999976 11 11121111211111111111111123446789999999999554444
Q ss_pred CChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 441 DNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 441 ~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
...++..|.+||.+|+.+||++||||||++|+|
T Consensus 66 ~~~~~~~l~~iL~~~~~~~~~~~Y~qG~~~i~~ 98 (214)
T PF00566_consen 66 NEQNQKSLERILSAYAKYNPDVGYCQGMNDIAA 98 (214)
T ss_dssp THHHHHHHHHHHHHHHHHTTTTSS-TTHHHHHH
T ss_pred hcchHHHHHHHHHHhccccccccccchhhhhhh
Confidence 456789999999999999999999999999975
No 12
>KOG1092 consensus Ypt/Rab-specific GTPase-activating protein GYP1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.28 E-value=2.4e-12 Score=130.87 Aligned_cols=120 Identities=26% Similarity=0.369 Sum_probs=98.7
Q ss_pred cCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccccc
Q 012006 344 VMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLI 423 (473)
Q Consensus 344 ~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~I 423 (473)
.++.++||+.. ++|||...|+.+|++|+|+.|.++ +-|+...+.++.+|..++.++-......... .+..++|
T Consensus 175 ~id~~~Lr~l~-w~Gvp~~~Rp~~Wkll~gylp~n~--~rr~~~l~~Kr~eY~~~v~~~~~~~~~~~~~----~d~~rQI 247 (484)
T KOG1092|consen 175 IIDLEKLRKLC-WNGVPSKMRPIVWKLLSGYLPPNS--DRREGTLQRKRKEYVDSVVQYFDSLTNGDED----QDTWRQI 247 (484)
T ss_pred cccHHHHHHHc-cCCCCccccCccceeeecccCcch--hhhhhhHHHHHHHHHHHHHHHhccCCCcccc----Ccccccc
Confidence 36778888877 899999999999999999998765 4567778889999999998876543321111 2345799
Q ss_pred ccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006 424 DKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI 472 (473)
Q Consensus 424 ekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~ 472 (473)
..|+.||.|+.++|..+- -++.+.+||..++.++|..|||||.|||+
T Consensus 248 ~id~prm~p~~~l~q~~~--vq~~lerIl~iwairhpAsGyvqgindlv 294 (484)
T KOG1092|consen 248 PIDIPRMNPHIPLFQQKI--VQEMLERILYIWAIRHPASGYVQGINDLV 294 (484)
T ss_pred ccCCCCCCccccchhhHH--HHHHHHHHHHHHHHhcccccccccceeee
Confidence 999999999999998633 36899999999999999999999999986
No 13
>KOG4347 consensus GTPase-activating protein VRP [General function prediction only]
Probab=99.26 E-value=5.7e-12 Score=134.07 Aligned_cols=119 Identities=23% Similarity=0.395 Sum_probs=97.8
Q ss_pred HHHHHHhhhccCCcC---ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh
Q 012006 331 SEEWTTFLDNEGRVM---DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407 (473)
Q Consensus 331 ~~~W~~~~~~~g~~~---~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~ 407 (473)
+..|+++|..+|+.+ ...++++.+ +.|+|...|+++|..+.|.. .-+..+.++|.++.......
T Consensus 173 ~k~W~~~f~~~G~~~~~~qt~~~~Klv-~~gipe~~rgeiW~l~sGav----------~~~l~~~Geygkll~~~~G~-- 239 (671)
T KOG4347|consen 173 EKFWKKYFIKDGPNMNQIQTILLRKLL-YNGFPEDPRGEIWYLASGAV----------ASLLLNPGEYGKLLHSVTGK-- 239 (671)
T ss_pred HHHHHHHHHHhcccccHHHHHHHHHHH-HHhcCCChHHHHHHhhhHHH----------HHhhcCcHHhhhhhhcccCC--
Confidence 466999999999975 467899999 89999999999999999983 23455689999887654331
Q ss_pred hHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI 472 (473)
Q Consensus 408 ~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~ 472 (473)
..-....|++|+.|.-|.|+-|+.+. +...|++||.+|++-||+|||||-||-++
T Consensus 240 --------~~~a~eEIE~Dl~rsLpEhpA~Q~e~--gi~aLR~vL~Aya~~Np~vGYcQaMNIV~ 294 (671)
T KOG4347|consen 240 --------RSVATEEIEPDLGRSLPEHPAFQSEP--GIAALRRVLTAYAWSNPEVGYCQAMNIVG 294 (671)
T ss_pred --------cccccccccCCCCCCCCcchhhhCCC--chhhHHHHHHhhhccCCchhHHHHHHHHH
Confidence 11234579999999999999999754 46999999999999999999999999765
No 14
>KOG2221 consensus PDZ-domain interacting protein EPI64, contains TBC domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.16 E-value=5.8e-12 Score=118.40 Aligned_cols=119 Identities=23% Similarity=0.376 Sum_probs=92.6
Q ss_pred HHHHHHhhhccCCcC--ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (473)
Q Consensus 331 ~~~W~~~~~~~g~~~--~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~ 408 (473)
+.+|-.++++|...+ ..++|+.+. +.|||+++|+.+|.+|.|.+.. ...++..|..+..+ +.
T Consensus 75 eskwL~mldnw~~~m~kk~~~ir~rc-rkgippslr~Raw~ylsGa~~~----------~~~np~~~~~~~~~-----pG 138 (267)
T KOG2221|consen 75 ESKWLHMLDNWHEEMRKKQKKIRPRC-RKGIPPSLRGRAWRYLSGAPSP----------PPKNPVVFDELGPA-----PG 138 (267)
T ss_pred HHHHHHHHHHHHHHHHhccccccchh-hcCCCcccchhHHHhhcCCCCC----------CCCCcchhhhccCC-----CC
Confidence 478999999876543 456788887 9999999999999999998642 22345666554321 11
Q ss_pred HhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNI 472 (473)
Q Consensus 409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~ 472 (473)
.. ....-|++|+.|-||.|.+|......+...|+|+|.+|.+|+|+.||||+-.-|+
T Consensus 139 ~p-------~t~e~i~kdl~rqfp~hemf~s~~k~gkqelfr~lka~ti~~pe~g~cq~qapia 195 (267)
T KOG2221|consen 139 DP-------KTAEGIHKDLHRQFPFHEMFGSSGKTGKQELFRVLKAYTIYKPEEGYCQAQAPIA 195 (267)
T ss_pred CC-------cchhhhccccccCCCcccccccccccchHHHHHHHHHHHHhCchhhhhhhhchHH
Confidence 11 1234799999999999999998877788999999999999999999999966554
No 15
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=99.14 E-value=2.8e-11 Score=130.81 Aligned_cols=124 Identities=23% Similarity=0.347 Sum_probs=92.3
Q ss_pred HHHHHHhhhccCCc---CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh
Q 012006 331 SEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP 407 (473)
Q Consensus 331 ~~~W~~~~~~~g~~---~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~ 407 (473)
.+.|.+++.. ++. .+.+.+...+ +.|||.+-|+++|.||.--+ .+..... .+++-..++.
T Consensus 549 ~~~wek~~e~-~~~~~k~d~ed~~~~l-~~gvprsrrgeiwtflA~q~----------~~~~~l~-----~~kr~~~~p~ 611 (948)
T KOG4436|consen 549 IETWEKILER-TRIKIKKDMEDLHSAL-RTGVPRSRRGEIWTFLAEQH----------SLNHALP-----DKKRPPDFPY 611 (948)
T ss_pred HHHHHHHHHH-hhhcccccHHHHHHHH-HccCchhhhHHHHHHHHHHH----------HHhccCC-----cccCCCCCCh
Confidence 3679999876 555 3778888888 99999999999999997332 1111111 1111111111
Q ss_pred hHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 408 EQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 408 ~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
......+.+..+.|-.|+-||||+|++|+..-++++..|+|+|.+|+..+|++|||||.+++++
T Consensus 612 --~~llkqLte~qhAi~idlgrtfp~h~~~~~qlg~gqlsl~n~Lkayslld~e~gycqg~~fv~g 675 (948)
T KOG4436|consen 612 --KELLKQLTEQQHAILIDLGRTFPTHPYFSDQLGLGQLSLFNLLKAYSLLDPEVGYCQGLSFVAG 675 (948)
T ss_pred --HHHHHHHHHHHHHHHHhhccccCCCHHHHhhccccHHHHHHHHHHhcccCccccccCcchhhhh
Confidence 1112224456778999999999999999999899999999999999999999999999999875
No 16
>KOG1091 consensus Ypt/Rab-specific GTPase-activating protein GYP6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.03 E-value=1.3e-10 Score=122.03 Aligned_cols=108 Identities=26% Similarity=0.343 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCCh---------------------hHhhhhhhccccc
Q 012006 362 KLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISP---------------------EQARRFTKFRERK 420 (473)
Q Consensus 362 ~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~---------------------~q~~~~~~~~~~~ 420 (473)
.+|+.+|+.+||+.|.+.+...- -....+..|.+++.....-+. ..+..|-.-.+..
T Consensus 28 ~~Rgv~Wrl~L~vLp~~~ss~id--~~~~~ra~~r~~r~~~L~dPh~~k~~~s~d~~idnPLSq~~~S~W~rfF~d~EL~ 105 (625)
T KOG1091|consen 28 NLRGVRWRLLLGVLPSENSSWID--NLRRLRANYRRLRRRLLIDPHNLKENHSPDLPIDNPLSQNPQSVWNRFFRDAELE 105 (625)
T ss_pred hhhhHHHHHhheecCCCchhHHH--HHHHHhhhhhccccccccCccccccccCCCcccCCccccCCCchhhhhcCcHHHH
Confidence 58999999999999976443221 122335666665443221100 0112221224667
Q ss_pred cccccccccCCCCC-cccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 421 GLIDKDVVRTDRSV-TFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 421 ~~IekDV~RTd~~~-~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
..|++||.||||.+ .||+.+.. +.+|++||+.||.-||.+||-|||++|+|
T Consensus 106 ~~i~qDvsRtfPe~~~fFqs~~~--q~mLr~iLl~~~lehp~i~YrQGMHElLA 157 (625)
T KOG1091|consen 106 KTIDQDVSRTFPEHSLFFQSPEV--QGMLRRILLLYALEHPEIGYRQGMHELLA 157 (625)
T ss_pred HhhcchhhccCcchhhhhcCchh--hHHHHHHHHHHHhhchhhhHHhhhhhhhh
Confidence 88999999999999 78886554 58999999999999999999999999987
No 17
>KOG1102 consensus Rab6 GTPase activator GAPCenA and related TBC domain proteins [General function prediction only]
Probab=99.03 E-value=2.2e-10 Score=119.88 Aligned_cols=105 Identities=29% Similarity=0.407 Sum_probs=76.3
Q ss_pred ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccccccc
Q 012006 346 DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLIDK 425 (473)
Q Consensus 346 ~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~Iek 425 (473)
...++..++ ..|||.++|+.+|..+++.. ++... .........++....+. ...+| +
T Consensus 134 ~~~~l~~~~-~~gip~~~r~~~W~l~~~~~--------~~~~~---~~~~~l~~~~~~~~~~~----------~~~~~-~ 190 (397)
T KOG1102|consen 134 RPLKLSRRV-LVGIPDELRGLVWQLLLYAV--------EESLF---DSLDELYRLQLDEPEPH----------ESEII-R 190 (397)
T ss_pred cHHHHHHHh-hccccHHHHHHHHHHhcccH--------hhhhh---hhHHHHHHHhhccCCCc----------hhHHH-h
Confidence 456777777 78999999999999999862 01111 11111122222221111 12356 9
Q ss_pred ccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 426 DVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 426 DV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
|+.||+|.+..|....+.+++.|.+||.+|++|++++||||||..++|
T Consensus 191 d~~Rt~~~~~~f~~~~~~~q~sl~~vl~a~s~~~~~~gy~q~m~~~a~ 238 (397)
T KOG1102|consen 191 DLSRTFPAHLLFRKRYGVGQRSLYNVLKAYSLYDPEVGYCQGMSSIAA 238 (397)
T ss_pred hccCcCcchhhhhhhcCcccccccccchhhcccCCCcccccchhhHhh
Confidence 999999999999988888899999999999999999999999998854
No 18
>KOG2197 consensus Ypt/Rab-specific GTPase-activating protein GYP7 and related proteins [Signal transduction mechanisms]
Probab=98.20 E-value=1.1e-06 Score=94.20 Aligned_cols=85 Identities=35% Similarity=0.632 Sum_probs=77.2
Q ss_pred CCCCCCCCHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHh
Q 012006 323 KPRQPPLGSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQW 402 (473)
Q Consensus 323 ~~r~~plt~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w 402 (473)
+++..+++.+.|...|+++|++.+..++.++|..+||+|++|++||.+|+|+|..+++.++|.+++...+..|.+++.++
T Consensus 42 ~~~~~~l~~~~~~~~f~~~~~~~~~~~~l~~i~~~gi~psir~evw~fll~~y~~~~~~~~~~~~r~~~~~~~~~l~~~c 121 (488)
T KOG2197|consen 42 IKPGKTLKPEKWQANFDPDGRLSGFVKLLKLIILGGIDPSIRGEVWEFLLGCYDLDSTFEERNQLRVARRPQYNELLLVC 121 (488)
T ss_pred eccccccchhhhhhccCCCccccchhhhheeeecCCCCCcccchhHHHHhcccCCCCchHHHHHHHhhcccchHHHHHHc
Confidence 46778888999999999999997667777788899999999999999999999999999999999999999999999988
Q ss_pred hcCCh
Q 012006 403 QSISP 407 (473)
Q Consensus 403 ~~~~~ 407 (473)
..+.+
T Consensus 122 ~~~~~ 126 (488)
T KOG2197|consen 122 QMMKS 126 (488)
T ss_pred chhhh
Confidence 87644
No 19
>KOG4436 consensus Predicted GTPase activator NB4S/EVI5 (contains TBC domain)/Calmodulin-binding protein Pollux (contains PTB and TBC domains) [General function prediction only]
Probab=97.96 E-value=7.9e-06 Score=89.47 Aligned_cols=110 Identities=19% Similarity=0.293 Sum_probs=84.2
Q ss_pred CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccccc
Q 012006 345 MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGLID 424 (473)
Q Consensus 345 ~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~Ie 424 (473)
....+|+.+| .+|+|+..|-.+|..|+..-. +++. ...+.|.+++..-. .+++. ..+..|.
T Consensus 172 ~s~~~l~e~V-e~~~p~~frli~~qlLssatd-------~~q~--~I~e~~sdl~~~s~----~~Ek~-----~~~~~Ir 232 (948)
T KOG4436|consen 172 KSLHKLKELV-EGGIPMHFRLIRWQLLSSATD-------REQA--LIFEDYSDLAPCSS----QQEKE-----LHIGIIR 232 (948)
T ss_pred hchhhhHHHH-hcCCchHHHHHHHHHhccccc-------chhh--HHHHHHHHHhhhcc----hhhhh-----HHHHHHH
Confidence 4567999999 999999999999999997621 2221 23567777764322 22211 1345799
Q ss_pred cccccCCCCCcccCCCCCh-------hHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 425 KDVVRTDRSVTFFDGDDNP-------NVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 425 kDV~RTd~~~~~F~~~~~~-------~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
.|+.||.|.|.+|++.... ++..|+|+..+|...+.++|||||=|++++
T Consensus 233 rdi~~~~~eh~~fke~~s~~~~~~~~~~d~LfN~~K~~~~~~~E~ifsqGs~~m~G 288 (948)
T KOG4436|consen 233 RDIERTYPEHYFFKEQSSTVCSDIRFAQDQLFNVAKAYSTKDLEVIFSQGSAFMVG 288 (948)
T ss_pred HHhhccCcceeeeccCccCCcchhHHHHHHHHHHHHHHhhhhhhhhhccchHHHHH
Confidence 9999999999999975544 689999999999999999999999777653
No 20
>KOG1093 consensus Predicted protein kinase (contains TBC and RHOD domains) [General function prediction only]
Probab=97.51 E-value=0.00013 Score=77.70 Aligned_cols=103 Identities=19% Similarity=0.180 Sum_probs=73.9
Q ss_pred CCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhcccccc
Q 012006 342 GRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKG 421 (473)
Q Consensus 342 g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~ 421 (473)
|-......+.+.- ++++|+-.|+-+|..||++- ......|..+- +..+. ...+
T Consensus 340 g~~~k~~qI~r~a-~vdvpp~~R~~iW~aLL~l~-------------e~~~a~y~~ID-k~Ts~------------~tdr 392 (725)
T KOG1093|consen 340 GYPKKRLQILREA-YVDVPPLYRGFIWAALLQLE-------------ENHTAFYTLID-KGTSH------------STDR 392 (725)
T ss_pred cchHHHHHHHHHh-ccCCChhHhHHHHHHHhcCc-------------cccchhhhhhh-cCCCC------------cchh
Confidence 4444444555555 78999999999999999883 22345565442 11111 2345
Q ss_pred ccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 422 LIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 422 ~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
+||.|+.|+..--...+.+ .++++|+++|.+++..+|..-|-||.--|+|
T Consensus 393 qievdiprchQyd~~lsSp--~~~r~lrRvLkawv~~s~~fvywqgldsLa~ 442 (725)
T KOG1093|consen 393 QIEVDIPRCHQYDELLSSP--KGHRKLRRVLKAWVTWSPIFVYWQGLDSLAA 442 (725)
T ss_pred hhhcccchhhhcccccCCH--HHHHHHHHHHHHHHhcCcceeecCCChhhhh
Confidence 8999999997766555543 3579999999999999999999999876654
No 21
>KOG2595 consensus Predicted GTPase activator protein [Signal transduction mechanisms]
Probab=96.17 E-value=0.0031 Score=63.76 Aligned_cols=101 Identities=21% Similarity=0.151 Sum_probs=58.0
Q ss_pred CChHHHHHHhh-cCC-CChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHhhhhhhccccccc
Q 012006 345 MDSNALRKRIF-YGG-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQARRFTKFRERKGL 422 (473)
Q Consensus 345 ~~~~~lk~~If-~~G-Ip~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~~~~~~~~~~~~~ 422 (473)
.+.+.|+..-. -+| +.+++|+.||+-|+|+---.-. ...|....+ -.+-.+|
T Consensus 46 ~dv~~Lr~i~l~p~Glv~dslRk~vWp~L~~~~~n~~~-----------~~~~~~~~q---------------~hkd~nQ 99 (395)
T KOG2595|consen 46 KDVDALRYIGLSPGGLVNDSLRKDVWPELLALNINHLD-----------ATSTLTPVQ---------------KHKDYNQ 99 (395)
T ss_pred ccHHHHHHhccCCCccccHHHHHHHHHHHhccccCCCc-----------ccccCChhh---------------hCcccce
Confidence 46677775542 223 4789999999999997321100 111111110 0112458
Q ss_pred cccccccCCCCCcccCCCCC---hhHHHHHHHHHHHhccCCCCCcccchhhhc
Q 012006 423 IDKDVVRTDRSVTFFDGDDN---PNVHLLRDILLTYSFYNFDLGYCQVITSNI 472 (473)
Q Consensus 423 IekDV~RTd~~~~~F~~~~~---~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~ 472 (473)
+..||.|++...+-=. +.+ ..+..|..++.---..||.+-|-||.+||+
T Consensus 100 V~LDv~RSl~rfppg~-p~~~R~~Lq~qL~~LI~rVl~~yP~L~YYQGyHDI~ 151 (395)
T KOG2595|consen 100 VILDVERSLGRFPPGI-PKELRLQLQKQLTELILRVLRKYPTLNYYQGYHDIV 151 (395)
T ss_pred EEEehhhhhccCCCCC-CHHHHHHHHHHHHHHHHHHHHHCCCcchhcchhHHH
Confidence 9999999987643100 111 123445544444445689999999999986
No 22
>PF08567 TFIIH_BTF_p62_N: TFIIH p62 subunit, N-terminal domain; InterPro: IPR013876 The N-terminal region of the TFIIH basal transcription factor complex p62 subunit (BTF2-p62) forms an interaction with the 3' endonuclease XPG, which is essential for activity. The 3' endonuclease XPG is a major component of the nucleotide excision repair machinery. The structure of the N-terminal region reveals that it adopts a pleckstrin homology (PH) fold [, ]. ; PDB: 1Y5O_A 2LOX_A 2GS0_A 2L2I_A 2K2U_A 1PFJ_A 2RNR_B.
Probab=67.08 E-value=37 Score=27.51 Aligned_cols=65 Identities=14% Similarity=0.306 Sum_probs=42.1
Q ss_pred CCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCC--cCCceEe
Q 012006 64 ISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGL--AFPPLYF 141 (473)
Q Consensus 64 I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~--~~PpL~F 141 (473)
.+|.|.|.+. .-.|.|+|+..... . ..+|++++|..+++.+++..---+-|+.+++. .--.++|
T Consensus 12 ~~G~L~l~~d--~~~~~W~~~~~~~~----------~--~v~i~~~~I~~lq~Sp~~s~Kv~Lki~~~~~~~~~~~~f~F 77 (79)
T PF08567_consen 12 KDGTLTLTED--RKPLEWTPKASDGP----------S--TVSIPLNDIKNLQQSPEGSPKVMLKIVLKDDSSEESKTFVF 77 (79)
T ss_dssp EEEEEEEETT--CSSEEEEECCSSSS----------S--EEEEETTTEEEEEE--TTSSTEEEEEEETTSC---CCCEEE
T ss_pred CCcEEEEecC--CceEEEeecCCCCC----------c--eEEEEHHHhhhhccCCCCCcceEEEEEEecCCcccceEEEE
Confidence 4588888743 22488888533221 1 36799999999999999655455788888873 3456777
Q ss_pred e
Q 012006 142 Y 142 (473)
Q Consensus 142 ~ 142 (473)
+
T Consensus 78 ~ 78 (79)
T PF08567_consen 78 T 78 (79)
T ss_dssp -
T ss_pred e
Confidence 5
No 23
>PF14472 DUF4429: Domain of unknown function (DUF4429)
Probab=61.25 E-value=8.2 Score=32.26 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=28.1
Q ss_pred eeeeCCCeeEEEeecCC-CCceEEEEEeCCCCc
Q 012006 104 RAVPFTEVRSIRRHTPA-FGWQYIIVVLSSGLA 135 (473)
Q Consensus 104 ~sv~ls~I~SI~~~~p~-~G~~yiii~~~dG~~ 135 (473)
..|||++|-.|..++|. .+.+||.|++++|..
T Consensus 27 ~~ipl~~i~gV~~~~pg~~~~G~Lrf~~~~g~~ 59 (94)
T PF14472_consen 27 KTIPLSAISGVEWKPPGGLTNGYLRFVLRGGAD 59 (94)
T ss_pred EEEEHHHcceEEEEcCCceeEEEEEEEECCcCc
Confidence 57999999999999996 778999999998664
No 24
>COG1507 Uncharacterized conserved protein [Function unknown]
Probab=43.15 E-value=49 Score=30.08 Aligned_cols=31 Identities=29% Similarity=0.587 Sum_probs=21.0
Q ss_pred CeeEEEeecCCCCceEEEEEe---CCCCcCCceEe
Q 012006 110 EVRSIRRHTPAFGWQYIIVVL---SSGLAFPPLYF 141 (473)
Q Consensus 110 ~I~SI~~~~p~~G~~yiii~~---~dG~~~PpL~F 141 (473)
-+..|-++.| .|.+-+|..- .||..+|.||+
T Consensus 20 gvl~I~~rcp-~g~P~VV~t~p~l~dg~PfPTly~ 53 (167)
T COG1507 20 GVLKIAYRCP-YGEPGVVKTAPKLDDGTPFPTLYY 53 (167)
T ss_pred CceEEEEECC-CCCceEEeecCCCCCCCcCCceee
Confidence 4456667777 4555444443 48999999999
No 25
>PF04683 Proteasom_Rpn13: Proteasome complex subunit Rpn13 ubiquitin receptor; InterPro: IPR006773 This family was thought originally to be involved in cell-adhesion [, ], but the members are now known to be proteasome subunit Rpn13, a novel ubiquitin receptor. The 26S proteasome is a huge macromolecular protein-degradation machine consisting of a proteolytically active 20S core, in the form of four disc-like proteins, and one or two 19S regulatory particles. The regulatory particle(s) sit on the top and or bottom of the core, de-ubiquitinate the substrate peptides, unfold them and guide them into the narrow channel through the centre of the core. Rpn13 and its homologues dock onto the regulatory particle through the N-terminal region which binds Rpn2. The C-terminal part of the domain binds de-ubiquitinating enzyme Uch37/UCHL5 and enhances its isopeptidase activity. Rpn13 binds ubiquitin via a conserved amino-terminal region called the pleckstrin-like receptor for ubiquitin, termed Pru, domain []. The domain forms two contiguous anti-parallel beta-sheets with a configuration similar to the pleckstrin-homology domain (PHD) fold []. Rpn13's ability to bind ubiquitin and the proteasome subunit Rpn2/S1 simultaneously supports evidence of its role as a ubiquitin receptor. Finally, when complexed to di-ubiquitin, via the Pru, and Uch37 via the C-terminal part, it frees up the distal ubiquitin for de-ubiquitination by the Uch37 []. ; GO: 0005634 nucleus, 0005737 cytoplasm; PDB: 2Z4D_A 2KR0_A 2Z59_A 2R2Y_A.
Probab=39.22 E-value=2.1e+02 Score=23.36 Aligned_cols=56 Identities=16% Similarity=0.169 Sum_probs=30.6
Q ss_pred CCCCceEEEEEe-CCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEE
Q 012006 62 ERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYII 127 (473)
Q Consensus 62 d~I~G~LsL~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yii 127 (473)
+.-+|+|.|.+. ++.+.+.|.|-+..+. .-..+-|.-.|..-.++.+...|.=|+.
T Consensus 13 d~~KG~l~l~~~~d~l~~f~W~~r~~~~~----------~e~d~il~pg~~~f~~V~~c~tGRVy~L 69 (85)
T PF04683_consen 13 DPRKGLLYLYKSEDGLLHFCWKPRDTTGE----------VEDDLILFPGDATFKKVPQCKTGRVYVL 69 (85)
T ss_dssp -SS-EEEEEEETTTS-EEEEEEETST-------------EEEEEEE-TTTEEEEE-TTSSTS-EEEE
T ss_pred CCCCEEEEEEECCCCeEEEEEEEcCcCCC----------cccceecCCCCeEEEECCcCCCCeEEEE
Confidence 347899999995 6789999999654210 0112335556666666655556655553
No 26
>PF11605 Vps36_ESCRT-II: Vacuolar protein sorting protein 36 Vps36; InterPro: IPR021648 Vps36 is a subunit of ESCRT-II, a protein involved in driving protein sorting from endosomes to lysosomes. The GLUE domain of Vps36 allows for a tight interaction to occur between the protein and Vps28, a subunit of ESCRT-I. This interaction is critical for ubiquitinated cargo progression from early to late endosomes []. ; PDB: 2HTH_B 2DX5_A 2CAY_B.
Probab=37.52 E-value=1.5e+02 Score=24.58 Aligned_cols=71 Identities=23% Similarity=0.281 Sum_probs=47.6
Q ss_pred EEEEeeCceEEccCCccc-CCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCC
Q 012006 44 ELVYLKDNVTIHPTQFAS-ERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (473)
Q Consensus 44 ~lly~K~~V~vhpt~~~~-d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G 122 (473)
.++|..++|-++-..... ..-.|.|.|+ .=-|-|+++.... .. ..++||++|..+....-.++
T Consensus 15 ~~~~~q~~V~LYdG~~K~~~~q~G~l~LT----sHRliw~d~~~~~-----------~~-s~~l~L~~i~~~e~~~gf~~ 78 (89)
T PF11605_consen 15 TIVYQQDGVGLYDGDQKTPNFQNGRLYLT----SHRLIWVDDSDPS-----------KH-SIALPLSLISHIEYSAGFLK 78 (89)
T ss_dssp -EEEEEEEEEEEETTECSTT-SCEEEEEE----SSEEEEEESSGHC-----------HH--EEEEGGGEEEEEEE-STTS
T ss_pred eEEEEecCeeeEcCCccCccccCCEEEEE----eeEEEEEcCCCCc-----------ee-EEEEEchHeEEEEEEccccC
Confidence 799999999999876555 5668999998 3478898744332 11 36899999999976655442
Q ss_pred -ceEEEEEe
Q 012006 123 -WQYIIVVL 130 (473)
Q Consensus 123 -~~yiii~~ 130 (473)
.+=|+|.+
T Consensus 79 sSpKI~l~l 87 (89)
T PF11605_consen 79 SSPKIILHL 87 (89)
T ss_dssp SS-EEEEEE
T ss_pred CCCeEEEEe
Confidence 23455554
No 27
>PRK03636 hypothetical protein; Provisional
Probab=30.42 E-value=53 Score=30.96 Aligned_cols=61 Identities=15% Similarity=0.151 Sum_probs=47.9
Q ss_pred eeEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHhcccccccCCCCceEEEeC
Q 012006 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVND 173 (473)
Q Consensus 111 I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~L~~~~~l~rS~~dp~l~Lvn~ 173 (473)
+..||+..-..+.+++++++-.|..-+|+-|+.+|. .+.++-+-|-++. -.-+.++|+.=.
T Consensus 40 L~~VHFVe~~~~~~r~l~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~ 100 (179)
T PRK03636 40 MEKVHFVENAEYCPRGLVMSAHGVDDVPFRFFKGNV-MTTDAEKSFHDIR-LNRDEDIYIQLN 100 (179)
T ss_pred HhheeeeccccCCCceEEEEeeccCCCceEEEeCCc-eecCHHHHHHHHH-cCCCCCeEEEEe
Confidence 346777777778889988998888889999999998 7888888877776 344556888743
No 28
>PF07024 ImpE: ImpE protein; InterPro: IPR009211 This entry contains proteins of unknown function that occur in bacteria that interact with and manipulate eukaryotic cells []. Salmonella enterica protein SciE is encoded in the centisome 7 genomic island (SCI) []. Deletion of the entire island affects the ability of bacteria to enter eukaryotic cells []. Therefore, SciE and other SCI proteins may be involved in virulence. Interestingly, another member of this family, Rhizobium leguminosarum protein ImpE, has been reported to be encoded by an avirulence locus involved in temperature-dependent protein secretion []. It is believed that the imp locus is involved in the secretion to the environment of proteins, including periplasmic RbsB protein, that cause blocking of R. leguminosarum infection in plants [].; PDB: 1ZBP_A.
Probab=29.53 E-value=54 Score=28.99 Aligned_cols=30 Identities=30% Similarity=0.531 Sum_probs=21.7
Q ss_pred eeCCCeeEEEeecCCC----CceEEEEEeCCCCc
Q 012006 106 VPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (473)
Q Consensus 106 v~ls~I~SI~~~~p~~----G~~yiii~~~dG~~ 135 (473)
||+++|.+|++.+|.. =|.-..|.++||..
T Consensus 30 vPf~~I~~l~~~~p~~l~DlvWrpa~i~l~dG~~ 63 (123)
T PF07024_consen 30 VPFSRIASLEFEPPASLRDLVWRPAEITLRDGGE 63 (123)
T ss_dssp EEGGGEEEEEE----SSGGGTEEEEEEEETTTEE
T ss_pred EEHHHccceecCCCCCHHHhcccceEEEEeCCCe
Confidence 9999999999999943 36667899999865
No 29
>PF08109 Antimicrobial14: Lactocin 705 family; InterPro: IPR012517 This family consists of lactocin 705 which is a bacteriocin produced by Lactobacillus casei CRL 705. Lactocin 705 is a class IIb bacteriocin, whose activity depends upon the complementation of two peptides (705-alpha and 705-beta) of 33 amino acid residues each. Lactocin 705 is active against several Gram-positive bacteria, including food-borne pathogens and is a good candidate to be used for biopreservation of fermented meats [].
Probab=28.01 E-value=22 Score=22.79 Aligned_cols=11 Identities=36% Similarity=0.453 Sum_probs=8.8
Q ss_pred CCcccchhhhc
Q 012006 462 LGYCQVITSNI 472 (473)
Q Consensus 462 lGYvQGMsdL~ 472 (473)
-||.||.-|.+
T Consensus 3 sgyiqgipdfl 13 (31)
T PF08109_consen 3 SGYIQGIPDFL 13 (31)
T ss_pred cccccccHHHH
Confidence 48999998765
No 30
>PF14844 PH_BEACH: PH domain associated with Beige/BEACH; PDB: 1MI1_B 1T77_C.
Probab=26.29 E-value=58 Score=27.30 Aligned_cols=94 Identities=16% Similarity=0.255 Sum_probs=49.4
Q ss_pred EEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCcccccc---ccCceeeeeeeCCCeeEEEeecCC
Q 012006 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEK---DRNLYTIRAVPFTEVRSIRRHTPA 120 (473)
Q Consensus 44 ~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~---d~~~~~~~sv~ls~I~SI~~~~p~ 120 (473)
+++|.-+...|.|. ..++|.|.|.+. .|-++|+............ ..........|+++|..|+.+.--
T Consensus 1 ~i~~s~~c~~I~~~----~~~~G~l~i~~~----~i~F~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~I~~v~~RRyl 72 (106)
T PF14844_consen 1 KILLSVPCELITPL----DSIPGTLIITKS----SIYFIPNDNSSENKISSENPSISISKPKSKRWPLSDIKEVHKRRYL 72 (106)
T ss_dssp --SEEEEEEEEETT----EEEEEEEEE-SS----EEEEEE--TTSHHHHCS-HHHHCC---TCEEEEGGGEEEEEEEEET
T ss_pred CEEEEEEEEEEEee----eeEEEEEEEeCC----EEEEEECCcccccccccccccccccCCceEEEEHHHhHHHHHHHhc
Confidence 35666677777774 359999999855 4668887111110000000 011111346899999999988554
Q ss_pred CCceEEEEEeCCCCcCCceEeecCCh
Q 012006 121 FGWQYIIVVLSSGLAFPPLYFYTGGV 146 (473)
Q Consensus 121 ~G~~yiii~~~dG~~~PpL~F~~GG~ 146 (473)
+---=+.|...||.++= |-|.+.+.
T Consensus 73 lr~~AlEiF~~dg~s~f-~~F~~~~~ 97 (106)
T PF14844_consen 73 LRDTALEIFFSDGRSYF-FNFESKKE 97 (106)
T ss_dssp TEEEEEEEEETTS-EEE-EE-SSHHH
T ss_pred CcceEEEEEEcCCcEEE-EEcCCHHH
Confidence 33223688899987521 34444444
No 31
>KOG3294 consensus WW domain binding protein WBP-2, contains GRAM domain [Signal transduction mechanisms]
Probab=24.32 E-value=2e+02 Score=28.44 Aligned_cols=57 Identities=30% Similarity=0.447 Sum_probs=43.0
Q ss_pred eeeeeeeCCCeeEEEeecCCCCceEE--EEEeC-----CCCcCCceEeecCChHHHHHHHHhcc
Q 012006 101 YTIRAVPFTEVRSIRRHTPAFGWQYI--IVVLS-----SGLAFPPLYFYTGGVREFLATIKQHV 157 (473)
Q Consensus 101 ~~~~sv~ls~I~SI~~~~p~~G~~yi--ii~~~-----dG~~~PpL~F~~GG~~~FL~~L~~~~ 157 (473)
...|.+|+..|.-..+.||-+|..|| ++.-- .|..-=-|-|..||..+|-..|-+.+
T Consensus 69 fksF~MPf~~mkd~klnQPvF~aNyikGtV~pvpgGg~~g~as~Kl~F~~GG~ieFgq~~l~~~ 132 (261)
T KOG3294|consen 69 FKSFMMPFNLMKDVKLNQPVFGANYIKGTVQPVPGGGWEGEASFKLTFNEGGCIEFGQLLLQAA 132 (261)
T ss_pred hhhhcchhhhhhhceecCcccccceeeeeEeecCCCCccceeEEEEEecCCCchhHHHHHHHHH
Confidence 44688999999999999999998886 54442 24444568999999877777665533
No 32
>PF08864 UPF0302: UPF0302 domain; InterPro: IPR014963 These proteins are functionally uncharacterised. ; PDB: 3DO9_A.
Probab=24.32 E-value=35 Score=29.30 Aligned_cols=59 Identities=8% Similarity=0.051 Sum_probs=36.9
Q ss_pred eEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHhcccccccCCCCceEEEe
Q 012006 112 RSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVN 172 (473)
Q Consensus 112 ~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~L~~~~~l~rS~~dp~l~Lvn 172 (473)
..||+..-..+.+++++++-.|..-+|+-|+.+|. .+-++-+-+-++.-.+ +.++|+.=
T Consensus 35 ~~vhFVe~~~~~~~~L~iS~~~~~~~pf~f~k~~~-~~~d~~~~fhdir~n~-~e~~yI~l 93 (106)
T PF08864_consen 35 ERVHFVENAIKYPRGLEISATCSDGEPFRFYKNNQ-MTTDVEQAFHDIRLNP-DEPIYIQL 93 (106)
T ss_dssp TTEEE-S-GGGSTTEEEEEBSSS-S-SEEEEESS--EE--HHHHHHHHHHHT-SS-EEEEE
T ss_pred hheEeecccccCCCEEEEEeccCCCCcEEEEeCCc-EEcCHHHHHHHHHcCC-CCCEEEEE
Confidence 45677776667788888888788889999999998 6666666655665554 44688863
No 33
>PRK03057 hypothetical protein; Provisional
Probab=23.48 E-value=82 Score=29.70 Aligned_cols=62 Identities=13% Similarity=0.191 Sum_probs=47.5
Q ss_pred eeEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHhcccccccCCCCceEEEeCC
Q 012006 111 VRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQHVLLVRSVEDANVFLVNDF 174 (473)
Q Consensus 111 I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~L~~~~~l~rS~~dp~l~Lvn~~ 174 (473)
+-.||+..-..+.+++++++-.+..-+|+-|+.+|. .+.++-+-|-++. -.-+.++|+.=.+
T Consensus 38 L~~VHFVe~~~~~~r~L~iS~~~~~~~pF~F~k~~~-~~~d~e~aFhdir-lN~~~~iYIql~F 99 (180)
T PRK03057 38 LENVHFTETEQKRARTLIISTAQSDEPGFVFYRGGQ-KSESLAAAMGDLA-LNPNEPLYLILHF 99 (180)
T ss_pred HhheeeecccccCCCeEEEEeeccCCCceEEEeCCc-EecCHHHHHHHHH-cCCCCCeEEEEeC
Confidence 346777777777888888888888889999999998 7888887777776 4455668887433
No 34
>PF14470 bPH_3: Bacterial PH domain
Probab=22.80 E-value=1e+02 Score=24.77 Aligned_cols=50 Identities=20% Similarity=0.320 Sum_probs=36.8
Q ss_pred eeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeecCChHHHHHHHHh
Q 012006 104 RAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTGGVREFLATIKQ 155 (473)
Q Consensus 104 ~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~GG~~~FL~~L~~ 155 (473)
..||+++|.+|..+.--. ...+.|.+ +|..+-.-.++.+-.+.|.+.+++
T Consensus 47 ~~i~y~~I~~v~~~~g~~-~~~i~i~~-~~~~~~i~~i~k~~~~~~~~~i~~ 96 (96)
T PF14470_consen 47 ESIPYDDITSVSFKKGIL-GGKITIET-NGEKIKIDNIQKGDVKEFYEYIKE 96 (96)
T ss_pred EEEEhhheEEEEEEcccc-ccEEEEEE-CCEEEEEEEcCHHHHHHHHHHHhC
Confidence 579999999999984322 23466666 777777777888877888887753
No 35
>KOG2224 consensus Uncharacterized conserved protein, contains TBC domain [Signal transduction mechanisms; General function prediction only]
Probab=20.65 E-value=33 Score=36.41 Aligned_cols=48 Identities=35% Similarity=0.627 Sum_probs=38.5
Q ss_pred CCcEEEEeeCceEEccCCccc-----CCCCceEEEEEe-------CC---eeEEEEEecCCCC
Q 012006 41 EGAELVYLKDNVTIHPTQFAS-----ERISGRLKLIKQ-------GS---SLFMTWIPYKGQN 88 (473)
Q Consensus 41 ~~~~lly~K~~V~vhpt~~~~-----d~I~G~LsL~~~-------~~---~~~l~W~P~~~~~ 88 (473)
...++|||||||.|||..... +.-||||-++-+ +. .++|+||||+.+-
T Consensus 33 ~d~eii~~knnvcihppe~~q~~~di~h~pgyl~~~~etf~de~~~akrptlilawipns~i~ 95 (781)
T KOG2224|consen 33 EDGEIIFCKNNVCIHPPEGAQDEGDIEHHPGYLCCTMETFKDEMLGAKRPTLILAWIPNSRIC 95 (781)
T ss_pred ecCeEEEecCCeeecCccccccccccccCCceEEEeehhhHHhhhccCCCeEEEEecCChhhh
Confidence 456999999999999976332 577999999865 12 8999999998664
Done!