Query 012006
Match_columns 473
No_of_seqs 283 out of 1312
Neff 6.8
Searched_HMMs 29240
Date Mon Mar 25 19:45:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/012006.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/012006hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qq8_A TBC1 domain family memb 99.9 1.7E-24 5.8E-29 220.0 9.3 140 331-473 21-162 (334)
2 1fkm_A Protein (GYP1P), ORF YO 99.9 9.5E-24 3.2E-28 219.3 9.5 131 331-473 8-138 (396)
3 2qfz_A TBC1 domain family memb 99.9 5.5E-24 1.9E-28 216.9 6.8 131 330-473 25-155 (345)
4 3qye_A TBC1 domain family memb 99.9 2.5E-24 8.7E-29 218.1 0.1 126 330-473 29-157 (331)
5 3hzj_A Rabgap1L, RAB GTPase-ac 99.9 4.2E-23 1.4E-27 207.4 3.8 117 331-473 5-123 (310)
6 4hl4_A TBC1 domain family memb 99.7 8.5E-19 2.9E-23 174.7 1.7 115 331-473 20-138 (292)
7 3qwl_A TBC1 domain family memb 98.7 2.2E-08 7.4E-13 99.7 9.0 66 332-401 27-92 (294)
8 2cay_A VPS36 PH domain, vacuol 96.2 0.01 3.6E-07 52.5 7.2 101 44-160 30-135 (145)
9 2hth_B Vacuolar protein sortin 96.0 0.055 1.9E-06 47.6 10.7 95 44-155 18-126 (140)
10 1pfj_A TFIIH basal transcripti 89.4 1.7 5.7E-05 36.3 8.4 63 65-145 21-83 (108)
11 2kr0_A Proteasomal ubiquitin r 41.2 1.8E+02 0.0062 29.6 11.1 84 61-159 44-134 (411)
12 2r2y_A Protein ADRM1; proteaso 38.1 2E+02 0.0067 25.2 9.5 54 62-126 44-98 (153)
13 1y5o_A TFB1, RNA polymerase II 28.0 2E+02 0.0068 24.0 7.3 55 63-131 11-65 (115)
14 1zbp_A Hypothetical protein VP 26.6 38 0.0013 32.6 3.1 35 98-135 163-201 (273)
15 1erd_A Pheromone ER-2; NMR {Eu 25.0 15 0.00052 23.8 0.0 10 459-468 14-23 (40)
No 1
>2qq8_A TBC1 domain family member 14; structural genomics consortium, RAB-GAP, SGC, GTPase activation, hydrolase activator; 2.00A {Homo sapiens}
Probab=99.90 E-value=1.7e-24 Score=220.01 Aligned_cols=140 Identities=21% Similarity=0.307 Sum_probs=101.6
Q ss_pred HHHHH-HhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhH
Q 012006 331 SEEWT-TFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (473)
Q Consensus 331 ~~~W~-~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q 409 (473)
..+|. .++.+|+.+.+.+++|+++ ++|||+++|+.||++|+|++ +..+.+.++.+.+..+..|..+...+.....+.
T Consensus 21 ~~~W~~~il~~w~~~~~~~~lr~l~-~~GIP~~lR~~vW~~llg~~-~~~~~~~y~~ll~~~~~~~~~~~~~~~~~~~~d 98 (334)
T 2qq8_A 21 VLTWNNEILPNWETMWCSRKVRDLW-WQGIPPSVRGKVWSLAIGNE-LNITHELFDICLARAKERWRSLSTGGSEVENED 98 (334)
T ss_dssp HHHHHHTTGGGCC--CCCHHHHHHH-HTCCCHHHHHHHHHHHHCCT-TCCCHHHHHHHHHHHHHHC--------------
T ss_pred HHHHHHHHHHhHHhccChHHHHHHH-HCCCCHHHHHHHHHHHhCCc-cccCHHHHHHHHHHHHHHHHHhccccccCcccc
Confidence 68998 5888888888999999988 89999999999999999986 567777776666666666666554432221111
Q ss_pred h-hhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 410 A-RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 410 ~-~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
. .......+...+|++||.||+|++++|.. ++++++.|++||.+|++|||++|||||||+|+|
T Consensus 99 ~~~~~~~~~~~~~~I~~Dv~RT~p~~~~F~~-~~~~~~~L~rIL~aya~~~p~vgY~QGm~~iaa 162 (334)
T 2qq8_A 99 AGFSAADREASLELIKLDISRTFPNLCIFQQ-GGPYHDMLHSILGAYTCYRPDVGYVQGMSFIAA 162 (334)
T ss_dssp --------CCHHHHHHHHHHTSSGGGCSSST-TSTTHHHHHHHHHHHHHHCTTTCCCTTHHHHHH
T ss_pred cccccccchhHHHHHHHHHhhcCCCchhhcC-CCchHHHHHHHHHHHHHhCCCCCcchhHHHHHH
Confidence 0 00001133457999999999999999986 456789999999999999999999999999985
No 2
>1fkm_A Protein (GYP1P), ORF YOR070C; GAP, YPT/RAB protein, vesicular trafficking, endocytosis, hydrolase, GTPase activation; 1.90A {Saccharomyces cerevisiae} SCOP: a.69.2.1 a.69.2.1 PDB: 2g77_A*
Probab=99.89 E-value=9.5e-24 Score=219.26 Aligned_cols=131 Identities=20% Similarity=0.328 Sum_probs=110.0
Q ss_pred HHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhHh
Q 012006 331 SEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQA 410 (473)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q~ 410 (473)
.++|.++++.+. .++.++||+++ ++|||+.+|+.||++|||+++++.+ +|+.....+++.|.+++.+|.......
T Consensus 8 ~~kw~~lL~~~~-~~d~~~Lr~l~-~~GIP~~lR~~vW~~LLg~~~~~~~--~~~~~l~~~~~~Y~~l~~~~~~~~~~~- 82 (396)
T 1fkm_A 8 ISKFDNILKDKT-IINQQDLRQIS-WNGIPKIHRPVVWKLLIGYLPVNTK--RQEGFLQRKRKEYRDSLKHTFSDQHSR- 82 (396)
T ss_dssp HHHHHHHHSSCS-BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTCSCSBGG--GHHHHHHHHHHHHHHHHHHTSSSSCST-
T ss_pred HHHHHHHHcCCC-CCCHHHHHHHH-HcCCCHHHHHHHHHHHHCCCCCChh--HHHHHHHHHHHHHHHHHHHHhhccCcc-
Confidence 589999998643 47899999988 6899999999999999999998764 566777788999999999886521111
Q ss_pred hhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 411 RRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 411 ~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
-.+..++|++||.||+|++++|+. ..+++.|++||.+|+++||++|||||||+|+|
T Consensus 83 -----~~~~~~qI~~Dv~RT~p~~~~F~~--~~~~~~L~rIL~aya~~np~iGY~QGmn~i~a 138 (396)
T 1fkm_A 83 -----DIPTWHQIEIDIPRTNPHIPLYQF--KSVQNSLQRILYLWAIRHPASGYVQGINDLVT 138 (396)
T ss_dssp -----HHHHHHHHHHHGGGSSTTSGGGGS--HHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHH
T ss_pred -----cHHHHHHHHHHhhhhCCCcccccC--chHHHHHHHHHHHHHHHCCCCCcccCcHHHHH
Confidence 112356899999999999999996 35789999999999999999999999999985
No 3
>2qfz_A TBC1 domain family member 22A; RAB-GAP, GTPase activator, structural genomics, structural genomics consortium, SGC, hydrolase activator; 2.10A {Homo sapiens} PDB: 3dzx_A
Probab=99.89 E-value=5.5e-24 Score=216.93 Aligned_cols=131 Identities=18% Similarity=0.299 Sum_probs=106.7
Q ss_pred CHHHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChhH
Q 012006 330 GSEEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPEQ 409 (473)
Q Consensus 330 t~~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~q 409 (473)
..++|.++++.+ .++.++||+++ ++|||+.+|+.||++|||++|.+. ++|+.....++..|.+++.+|......+
T Consensus 25 r~~kw~~~l~~~--~~d~~~Lr~l~-~~GiP~~~R~~vW~~llg~~p~~~--~~~~~~l~~~~~~Y~~l~~~~~~~~~~~ 99 (345)
T 2qfz_A 25 RLDKFKQLLAGP--NTDLEELRRLS-WSGIPKPVRPMTWKLLSGYLPANV--DRRPATLQRKQKEYFAFIEHYYDSRNDE 99 (345)
T ss_dssp HHHHHHHHHHCS--BCCHHHHHHHH-TTCCCGGGHHHHHHHHTTSSCSBG--GGHHHHHHHHHHHHHHHHHHC-------
T ss_pred HHHHHHHHHcCC--CCCHHHHHHHH-HCCCCHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHHHHHHHHHHhhcCCCcc
Confidence 458999999853 47899999998 799999999999999999998765 4667777788999999999986532211
Q ss_pred hhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 410 ARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 410 ~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
. ..+..++|++||.||+|+ ++|..+ ..++.|++||.+|+.+||++|||||||+|+|
T Consensus 100 ~-----~~~~~~~I~~Dv~RT~p~-~~F~~~--~~~~~L~rIL~~ya~~~p~vgY~QGm~~i~a 155 (345)
T 2qfz_A 100 V-----HQDTYRQIHIDIPRMSPE-ALILQP--KVTEIFERILFIWAIRHPASGYVQGINDLVT 155 (345)
T ss_dssp ------CHHHHHHHHHHGGGCSCH-HHHTSH--HHHHHHHHHHHHHHHHCTTTCCCTTHHHHHH
T ss_pred c-----hHHHHHHHHHhCcccCCc-cccCCc--hHHHHHHHHHHHHHHHCCCCCcccChHHHHH
Confidence 0 123457899999999999 999864 4578999999999999999999999999985
No 4
>3qye_A TBC1 domain family member 1; rabgap, RAB, myocytes, hydrolase activator; 2.20A {Homo sapiens} PDB: 3qyb_A
Probab=99.88 E-value=2.5e-24 Score=218.12 Aligned_cols=126 Identities=23% Similarity=0.422 Sum_probs=104.1
Q ss_pred CHHHHHHhhhccCCc---CChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCC
Q 012006 330 GSEEWTTFLDNEGRV---MDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSIS 406 (473)
Q Consensus 330 t~~~W~~~~~~~g~~---~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~ 406 (473)
+.++|.++++.+|+. .+.+++++++ ++|||+++|+.||++|+|++++.++..++ ...++..|.++..++.
T Consensus 29 ~~~~W~~~l~~~~~~~~~~~~~~l~~~~-~~GIP~~lR~~vW~~Llg~~~~~~~~~~~---~~~~~~~Y~~l~~~~~--- 101 (331)
T 3qye_A 29 VTTVWEKMLSTPGRSKIKFDMEKMHSAV-GQGVPRHHRGEIWKFLAEQFHLKHQFPSK---QQPKDVPYKELLKQLT--- 101 (331)
T ss_dssp HHHHHHHHHTCTTGGGCCCCHHHHHHHH-HTCCCGGGHHHHHHHHHHHHHHHCCCCSS---SCCCCCCHHHHTTSCC---
T ss_pred HHHHHHHHhccCCCCcccCCHHHHHHHH-HcCCCHHHHHHHHHHHhCcchhhhcchhh---hhhchHHHHHHHHhcC---
Confidence 568999999988883 5789999999 78999999999999999997643322111 1234678888875432
Q ss_pred hhHhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 407 PEQARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 407 ~~q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
...++|++||.||+|++++|..+.+++++.|++||.+|++|||++|||||||+|+|
T Consensus 102 -----------~~~~~I~~Dv~Rt~~~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~i~a 157 (331)
T 3qye_A 102 -----------SQQHAILIDLGRTFPTHPYFSAQLGAGQLSLYNILKAYSLLDQEVGYCQGLSFVAG 157 (331)
T ss_dssp -----------TTHHHHHHHHTTSSTTSTTTCSTTCHHHHHHHHHHHHHHHHCTTTSSCTTHHHHHH
T ss_pred -----------CchhHHHHhhcccCCCchhhcCCCcccHHHHHHHHHHHHHHCCCccccccHHHHHH
Confidence 12358999999999999999998889999999999999999999999999999985
No 5
>3hzj_A Rabgap1L, RAB GTPase-activating protein 1-like; structural genomics consortium, SGC, alternative splicing, GTPase activation, phosphoprotein; 2.30A {Homo sapiens}
Probab=99.86 E-value=4.2e-23 Score=207.43 Aligned_cols=117 Identities=24% Similarity=0.372 Sum_probs=98.3
Q ss_pred HHHHHHhhhccCCcC--ChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006 331 SEEWTTFLDNEGRVM--DSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (473)
Q Consensus 331 ~~~W~~~~~~~g~~~--~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~ 408 (473)
.++|.+++++|++.. +.+++++++ ++|||+++|+.||+.|+|+.+. ....+.|..+..+..
T Consensus 5 ~~~W~~~~~~w~~~~~~~~~~l~~l~-~~GIP~~lR~~vW~~llg~~~~-----------~~~~~~Y~~l~~~~~----- 67 (310)
T 3hzj_A 5 LYSWGELLGKWHSNLGARPKGLSTLV-KSGVPEALRAEVWQLLAGCHDN-----------QAMLDRYRILITKDS----- 67 (310)
T ss_dssp -CCHHHHHHHHHTSTTSCCTTHHHHH-HHCCCGGGHHHHHHHHTTCCCC-----------HHHHHHHHHHTTSCC-----
T ss_pred HHHHHHHHHHHhhhcccCHHHHHHHH-HCCCCHHHHHHHHHHHHCCCcc-----------hhHHHHHHHHHhccC-----
Confidence 478999999887764 678999999 7999999999999999999752 123467877653211
Q ss_pred HhhhhhhccccccccccccccCCCCCcccCCCCChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGDDNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
...++|++||.||+|++++|..+++.+++.|++||.+|+.|||++|||||||+|+|
T Consensus 68 ---------~~~~~I~~Dv~Rt~p~~~~f~~~~~~~~~~L~~IL~ay~~~~p~igY~QGm~~iaa 123 (310)
T 3hzj_A 68 ---------AQESVITRDIHRTFPAHDYFKDTGGDGQESLYKICKAYSVYDEDIGYCQGQSFLAA 123 (310)
T ss_dssp ---------TTHHHHHHHHTTSSTTSTTTSSTTSHHHHHHHHHHHHHHHHCTTTCSCTTHHHHHH
T ss_pred ---------CcHHHHHHHHHhhCCCchhhcCCCchhHHHHHHHHHHHHHHCCCCCccCCHHHHHH
Confidence 12358999999999999999988888999999999999999999999999999985
No 6
>4hl4_A TBC1 domain family member 20; rabgap, RAB1B, hydrolase activator, catalytic domain, F GTPase-activating proteins, RAB GTP-binding protein, GTP HY; 2.20A {Homo sapiens} PDB: 4hlq_A*
Probab=99.71 E-value=8.5e-19 Score=174.69 Aligned_cols=115 Identities=24% Similarity=0.176 Sum_probs=86.4
Q ss_pred HHHHHHhhhccCCcCChHHHHHHhhcC-C-CChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHHhhcCChh
Q 012006 331 SEEWTTFLDNEGRVMDSNALRKRIFYG-G-VDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQWQSISPE 408 (473)
Q Consensus 331 ~~~W~~~~~~~g~~~~~~~lk~~If~~-G-Ip~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~w~~~~~~ 408 (473)
.+++++++. ...++.++||+.+..+ | +|+++|+.||+.|+|+.+..... .|.... .
T Consensus 20 ~~~i~~~l~--~~~~dl~~Lr~l~~~~~g~~p~~lR~~vW~~Llg~~~~~~~~------------~~~~~~--------~ 77 (292)
T 4hl4_A 20 VAEIHQALN--SDPTDVAALRRMAISEGGLLTDEIRRKVWPKLLNVNANDPPP------------ISGKNL--------R 77 (292)
T ss_dssp HHHHHHHHT--SSSCCHHHHHHHHHSTTCSCCHHHHHHHHHHHTTCCSCSCCS------------CCCTTH--------H
T ss_pred HHHHHHHHc--CCcccHHHHHHHHcCCCCCCChhHHHHHHHHHhCCCcccCCC------------chhhhh--------c
Confidence 355666664 4457889999998643 3 79999999999999998765321 121110 0
Q ss_pred HhhhhhhccccccccccccccCCCCCcccCCC--CChhHHHHHHHHHHHhccCCCCCcccchhhhcC
Q 012006 409 QARRFTKFRERKGLIDKDVVRTDRSVTFFDGD--DNPNVHLLRDILLTYSFYNFDLGYCQVITSNIE 473 (473)
Q Consensus 409 q~~~~~~~~~~~~~IekDV~RTd~~~~~F~~~--~~~~~~~L~~IL~aYs~ynpdlGYvQGMsdL~a 473 (473)
. -.+..++|++||.||+|+++.|..+ ....++.|++||.+|++|||++|||||||+|+|
T Consensus 78 ~------~~~~~~qI~~Dv~RT~~~~~~~~~~~~~~~~~~~L~~iL~ay~~~~p~vgY~QGm~~iaa 138 (292)
T 4hl4_A 78 Q------MSKDYQQVLLDVRRSLRRFPPGMPEEQREGLQEELIDIILLILERNPQLHYYQGYHDIVV 138 (292)
T ss_dssp H------HCTTHHHHHHHHHTTGGGSCTTSCHHHHHHHHHHHHHHHHHHHHHCTTCCCCTTHHHHHH
T ss_pred c------cchhHHHHHHhhhhhhhhccCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCeeccHHHHHH
Confidence 0 1223568999999999999988642 245678999999999999999999999999985
No 7
>3qwl_A TBC1 domain family member 7; RAB GTPase activation, structural genomics consortium, TBC D SGC, hydrolase activator; 1.90A {Homo sapiens}
Probab=98.73 E-value=2.2e-08 Score=99.66 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=57.2
Q ss_pred HHHHHhhhccCCcCChHHHHHHhhcCCCChhHHHHHHHHHhCCCCCCCCHHHHHHHHhhcHHHHHHHHHH
Q 012006 332 EEWTTFLDNEGRVMDSNALRKRIFYGGVDHKLRREVWAFLLGYYAYDSTYAEREYLRCIKKSEYENIKRQ 401 (473)
Q Consensus 332 ~~W~~~~~~~g~~~~~~~lk~~If~~GIp~~lR~~vW~~LLg~y~~~st~~ER~~~~~~~~~~Y~~lk~~ 401 (473)
+..+.++. +.+++.++||+.+++||||+.+|+.||++|+|++|++++. |+.+.++++++|.+++++
T Consensus 27 ~~~~~ll~--~~~~d~~~L~~~~~~g~IP~~~R~~vWklLlGylP~~~~~--~~~~l~~kr~eY~~l~~~ 92 (294)
T 3qwl_A 27 KSLEILLK--DDRLDTEKLCTFSQRFPLPSMYRALVWKVLLGILPPHHES--HAKVMMYRKEQYLDVLHA 92 (294)
T ss_dssp HHHHHHTT--SSBCCHHHHHHHHHHSCCCHHHHHHHHHHHTTSSCSBGGG--HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc--CCCCCHHHHHHHHcCCCCCHHHHHHHHHHHcCCCCCCchh--HHHHHHHHHHHHHHHHHh
Confidence 45556664 6789999999999777799999999999999999998654 788889999999999977
No 8
>2cay_A VPS36 PH domain, vacuolar protein sorting protein 36; transport, ESCRT-II, lipid-binding, multivesicular bodies, membrane; 1.9A {Saccharomyces cerevisiae} SCOP: b.55.1.12
Probab=96.18 E-value=0.01 Score=52.52 Aligned_cols=101 Identities=13% Similarity=0.154 Sum_probs=75.6
Q ss_pred EEEEeeCceEEccCCcc-cCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCC
Q 012006 44 ELVYLKDNVTIHPTQFA-SERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFG 122 (473)
Q Consensus 44 ~lly~K~~V~vhpt~~~-~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G 122 (473)
.+||..++|-++..... ...-.|.|.|+ .--|-|+|... . ....|++||..|..+...+|.+|
T Consensus 30 ~il~~~d~V~Ly~g~~k~~~~k~G~lyLT----shRIIyv~~~~-----------~-~~~SfslPL~~v~~~e~~~~~fg 93 (145)
T 2cay_A 30 KDIFIDQSVGLYHGKSKILQRQRGRIFLT----SQRIIYIDDAK-----------P-TQNSLGLELDDLAYVNYSSGFLT 93 (145)
T ss_dssp CEEEEEEEEEEEETTEECTTCSSEEEEEE----SSEEEEEESSC-----------H-HHHCEEEEGGGEEEEEEECSSSS
T ss_pred EEEEEcCCcceecCCCCCcCCCccEEEEE----cCeEEEecCCC-----------C-cceEEEeEhHheeeeeEEcCccc
Confidence 68888899999987644 45677888887 44688987432 1 11258999999999999999887
Q ss_pred ce-EEEEEeC---CCCcCCceEeecCChHHHHHHHHhccccc
Q 012006 123 WQ-YIIVVLS---SGLAFPPLYFYTGGVREFLATIKQHVLLV 160 (473)
Q Consensus 123 ~~-yiii~~~---dG~~~PpL~F~~GG~~~FL~~L~~~~~l~ 160 (473)
+. -|++..+ .|...--|-|..||..+|...|.+-+.-.
T Consensus 94 ~s~Ki~l~~~p~~~~~~~~KLsFk~GGa~eF~~~l~~al~~~ 135 (145)
T 2cay_A 94 RSPRLILFFKDPSSSTEFVQLSFRKSDGVLFSQATERALENI 135 (145)
T ss_dssp SSCEEEEEESSCSSTTCCEEEEESSSCCHHHHHHHHHHHHHH
T ss_pred cCceEEEEecCCCCCceEEEEEEcCCCchHHHHHHHHHHHHH
Confidence 65 3666775 35567789999999999999998754433
No 9
>2hth_B Vacuolar protein sorting protein 36; GLUE domain, PH domain, viral budding, ubiquitin complex, protein transport; 2.70A {Homo sapiens} SCOP: b.55.1.12 PDB: 2dx5_A
Probab=95.96 E-value=0.055 Score=47.56 Aligned_cols=95 Identities=21% Similarity=0.240 Sum_probs=73.0
Q ss_pred EEEEeeCceEEccCCcccCCCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCc
Q 012006 44 ELVYLKDNVTIHPTQFASERISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGW 123 (473)
Q Consensus 44 ~lly~K~~V~vhpt~~~~d~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~ 123 (473)
.+|+..++|-++........-.|.|.|+ .--|-|+.... .. ..+++||+.|..+...+|.+|.
T Consensus 18 ~il~~~~~V~Ly~g~~k~~~k~G~l~LT----shRli~~d~~~------------~~-~s~~lpl~~v~~~e~~~~~f~~ 80 (140)
T 2hth_B 18 TLVIQQRGVRIYDGEEKIKFDAGTLLLS----THRLIWRDQKN------------HE-CCMAILLSQIVFIEEQAAGIGK 80 (140)
T ss_dssp CEEEEEEEEEEEETTCSSCCCCEEEEEE----SSEEEEEETTC------------CS-CCEEEEGGGEEEEEEECCTTSS
T ss_pred eEEEEcCCEEEecCCCCCCCcCCEEEEe----cCEEEEecCCC------------Cc-eEEEEEhHHeeeeeeecccccc
Confidence 6888899999998765566778888887 44688875432 11 2478999999999999997764
Q ss_pred -eEEEEEeCC-------------CCcCCceEeecCChHHHHHHHHh
Q 012006 124 -QYIIVVLSS-------------GLAFPPLYFYTGGVREFLATIKQ 155 (473)
Q Consensus 124 -~yiii~~~d-------------G~~~PpL~F~~GG~~~FL~~L~~ 155 (473)
.-|++.++. |...--|-|+.||..+|...|..
T Consensus 81 s~Ki~l~l~~~~~~~~~gp~~~s~~~~~kLsFr~Gg~~eF~~~L~~ 126 (140)
T 2hth_B 81 SAKIVVHLHPAPPNKEPGPFQSSKNSYIKLSFKEHGQIEFYRRLSE 126 (140)
T ss_dssp CCEEEEEECCCCCCSSSCCCSTTSCCEEEEEETTSCHHHHHHHHHH
T ss_pred CceEEEEecCCCccCCCCCcccccCcEEEEEEcCCCChHHHHHHHH
Confidence 457777764 33455799999999999999977
No 10
>1pfj_A TFIIH basal transcription factor complex P62 subunit; PH/PTB domain, structural proteomics in europe, spine, structural genomics; NMR {Homo sapiens} SCOP: b.55.1.9 PDB: 2rnr_B
Probab=89.45 E-value=1.7 Score=36.32 Aligned_cols=63 Identities=14% Similarity=0.276 Sum_probs=48.1
Q ss_pred CceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCceEeecC
Q 012006 65 SGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPLYFYTG 144 (473)
Q Consensus 65 ~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL~F~~G 144 (473)
.|.|.|... .|.|+|+.. +. . ..++++++|...++.|++.--=-+-|++++|.++ .|+|-++
T Consensus 21 dGtL~l~~d----~i~W~p~~~-~~-----------~-~vs~~~~~I~~qq~SP~~k~KVqLqi~l~~~~~~-~F~Ftn~ 82 (108)
T 1pfj_A 21 DGALYLMAE----RIAWAPEGK-DR-----------F-TISHMYADIKCQKISPEGKAKIQLQLVLHAGDTT-NFHFSNE 82 (108)
T ss_dssp BCEEEEETT----EEEEECSSS-SS-----------C-SEEEETTTCCCEEECCSSSSSCEEEEECSSSCEE-EEECCCS
T ss_pred CceEEEEcc----eEEEccCCC-CC-----------c-eEEEehhhhhcceeCCCCCccEEEEEEEeCCCce-EEEEcCc
Confidence 399999865 899999544 21 1 2457899999999999965444578889988765 8999887
Q ss_pred C
Q 012006 145 G 145 (473)
Q Consensus 145 G 145 (473)
+
T Consensus 83 ~ 83 (108)
T 1pfj_A 83 S 83 (108)
T ss_dssp S
T ss_pred H
Confidence 5
No 11
>2kr0_A Proteasomal ubiquitin receptor ADRM1; proteasome, 19S regulator, protein binding; NMR {Homo sapiens}
Probab=41.19 E-value=1.8e+02 Score=29.58 Aligned_cols=84 Identities=12% Similarity=0.139 Sum_probs=48.4
Q ss_pred cCCCCceEEEEEe-CCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeCCCCcCCce
Q 012006 61 SERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLSSGLAFPPL 139 (473)
Q Consensus 61 ~d~I~G~LsL~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~dG~~~PpL 139 (473)
-+.-+|+|.|.+. ++-+-++|.|-.... .+. .+-|-=.|..-.++.+.+.|.=|+ |.-++. ..-
T Consensus 44 Pd~rKG~l~l~~~ed~l~hf~W~~R~~~~-------~Ed----dlii~P~d~~f~~V~~c~tGRVyv-LkF~ss---~~r 108 (411)
T 2kr0_A 44 PDKRKGLVYIQQTDDSLIHFCWKDRTSGN-------VED----DLIIFPDDCEFKRVPQCPSGRVYV-LKFKAG---SKR 108 (411)
T ss_dssp ECCSCEEEEEEECTTSCEEEEEEESSSCC-------EEE----EEEECTTSEEEEECTTCSSSCEEE-EEETTT---CCE
T ss_pred ecCCCcEEEEEeCCCCcEEEEEecCCCCC-------ccc----ceEEcCCceEEEECCCCCCCeEEE-EEecCC---Cce
Confidence 3568999999984 667889999853211 011 122333666666666667775555 222332 233
Q ss_pred EeecC----Ch--HHHHHHHHhcccc
Q 012006 140 YFYTG----GV--REFLATIKQHVLL 159 (473)
Q Consensus 140 ~F~~G----G~--~~FL~~L~~~~~l 159 (473)
||+|= +. .+|.+.+..++.=
T Consensus 109 ~fFWmQe~~~~~D~~~~~~vN~ll~~ 134 (411)
T 2kr0_A 109 LFFWMQEPKTDQDEEHCRKVNEYLNN 134 (411)
T ss_dssp EEEEECCSCGGGHHHHHHHHHHHHHS
T ss_pred eEEEecCCCcccHHHHHHHHHHHHhC
Confidence 44443 22 4788877776653
No 12
>2r2y_A Protein ADRM1; proteasome, ubiquitin, PH-domain, 19S regulator, receptor, U proteasome-degradation pathway; 1.70A {Mus musculus} PDB: 2z59_A
Probab=38.12 E-value=2e+02 Score=25.21 Aligned_cols=54 Identities=11% Similarity=0.137 Sum_probs=33.1
Q ss_pred CCCCceEEEEEe-CCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEE
Q 012006 62 ERISGRLKLIKQ-GSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYI 126 (473)
Q Consensus 62 d~I~G~LsL~~~-~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yi 126 (473)
+.-+|+|.|.+. ++-+-+.|.|-..... +. .+-|.=.|..-.++.+.+.|.-|+
T Consensus 44 d~rKG~l~l~~~ed~l~hf~W~~R~t~~v-------Ed----DlIi~P~d~~F~kV~~c~tGRVyv 98 (153)
T 2r2y_A 44 DKRKGLVYIQQTDDSLIHFCWKDRTSGTV-------ED----DLIIFPDDCEFKRVPQCPSGRVYV 98 (153)
T ss_dssp CCSCEEEEEEECTTSCEEEEEEETTTCCE-------EE----EEECCTTSEEEEECTTCTTSCEEE
T ss_pred CCCCEEEEEEECCCCcEEEEEecCCCCCc-------cc----eEEEcCCCeEEEECCCCCCCeEEE
Confidence 457999999984 6678899998542210 11 122333566666665556775555
No 13
>1y5o_A TFB1, RNA polymerase II transcription factor B 73 kDa subunit; TFIIH, PH domain, phosphoinositides, VP16; NMR {Saccharomyces cerevisiae} SCOP: b.55.1.9 PDB: 2gs0_A 2k2u_A 2l2i_A 2lox_A*
Probab=27.95 E-value=2e+02 Score=23.96 Aligned_cols=55 Identities=13% Similarity=0.279 Sum_probs=39.7
Q ss_pred CCCceEEEEEeCCeeEEEEEecCCCCCCccccccccCceeeeeeeCCCeeEEEeecCCCCceEEEEEeC
Q 012006 63 RISGRLKLIKQGSSLFMTWIPYKGQNSNTRLSEKDRNLYTIRAVPFTEVRSIRRHTPAFGWQYIIVVLS 131 (473)
Q Consensus 63 ~I~G~LsL~~~~~~~~l~W~P~~~~~~~~~~~~~d~~~~~~~sv~ls~I~SI~~~~p~~G~~yiii~~~ 131 (473)
-..|.|.|.+...=-.|.|+|-.+ .. ..+|+|+.|..++--+.+..---+-|+-+
T Consensus 11 Kk~G~lti~eD~~p~~l~W~p~~g-~~-------------~isI~l~~It~LQqTp~ts~KvmLKI~~k 65 (115)
T 1y5o_A 11 KVSGIIAINEDVSPAELTWRSTDG-DK-------------VHTVVLSTIDKLQATPASSEKMMLRLIGK 65 (115)
T ss_dssp SCEEEEEEECSSSSCEEEEEESSS-SC-------------EEEEESTTCSEEEECCTTCSSEEEEEEEC
T ss_pred ecccEEEEccCCCcceEEEEECCC-Cc-------------cEEEEhhhhhhhhcCCCCCCceEEEEEEe
Confidence 467999998877777999999554 11 36899999999877666554334545444
No 14
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=26.60 E-value=38 Score=32.63 Aligned_cols=35 Identities=11% Similarity=0.260 Sum_probs=28.3
Q ss_pred cCceeeeeeeCCCeeEEEeecCCC----CceEEEEEeCCCCc
Q 012006 98 RNLYTIRAVPFTEVRSIRRHTPAF----GWQYIIVVLSSGLA 135 (473)
Q Consensus 98 ~~~~~~~sv~ls~I~SI~~~~p~~----G~~yiii~~~dG~~ 135 (473)
..-|| ||+++|.+|++.+|.. =|.-..|.+.||..
T Consensus 163 G~Y~W---lPf~~I~~l~~~~P~~l~DlvWrpa~l~l~dG~~ 201 (273)
T 1zbp_A 163 GNYFL---VPIASINTLEIKSATSLLESVWRPVEFDIDGLGE 201 (273)
T ss_dssp SCEEE---EEGGGEEEEEECCCCSSGGGTEEEEEEEETTTEE
T ss_pred CeEEE---eeHHHhhcccccCCCcHHHhhccccEEEEecCCe
Confidence 44566 9999999999999954 36668899999876
No 15
>1erd_A Pheromone ER-2; NMR {Euplotes raikovi} SCOP: a.10.1.1
Probab=24.97 E-value=15 Score=23.83 Aligned_cols=10 Identities=40% Similarity=0.574 Sum_probs=7.3
Q ss_pred CCCCCcccch
Q 012006 459 NFDLGYCQVI 468 (473)
Q Consensus 459 npdlGYvQGM 468 (473)
+.-.|||||-
T Consensus 14 htmcgycqgp 23 (40)
T 1erd_A 14 HTMCGYCQGP 23 (40)
T ss_dssp GGGGGGSCHH
T ss_pred ccccccccCC
Confidence 4457999993
Done!