BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 012007
(473 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 80.9 bits (198), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 73/225 (32%), Positives = 104/225 (46%), Gaps = 32/225 (14%)
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
VLK ++CL + + SGS D TLKVW KCL ++ H + S D
Sbjct: 113 VLKGHDDHVITCLQFCGNR--IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMR-D 169
Query: 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
+++ +GS D T+KVW E T C+ L H + V + ++++ V GS D +
Sbjct: 170 NIIISGSTDRTLKVWNAE-----TGECI-HTLYGHTSTVRCMHLHEKRVV--SGSRDATL 221
Query: 349 NFWECEK-HLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
W+ E H VL GH AV C+ G V SG+ D + +W E +CL L
Sbjct: 222 RVWDIETGQCLH--VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPE---TETCLHTLQ 276
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
GHT V +++ D H V SGSLD S++VW V
Sbjct: 277 GHTNRV--YSLQFDGIH-------------VVSGSLDTSIRVWDV 306
Score = 67.4 bits (163), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 62/219 (28%), Positives = 97/219 (44%), Gaps = 29/219 (13%)
Query: 249 LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQ 308
++ SGS D+TLKVW +C+ ++ H + + + V +GS D T++VW E
Sbjct: 171 IIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIE-- 227
Query: 309 GKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKM 368
T CL VL+ H AV V + V G+ D +V W+ E L+GH
Sbjct: 228 ---TGQCL-HVLMGHVAAVR--CVQYDGRRVVSGAYDFMVKVWDPETETCL-HTLQGHTN 280
Query: 369 AVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428
V L G V SGS D +I +W E +C+ LTGH + ++++
Sbjct: 281 RVYSLQFDGIHVVSGSLDTSIRVWDVETG---NCIHTLTGHQSLTSGMELKDN------- 330
Query: 429 HQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKGLHSPTQ 467
+ SG+ D +VK+W + L+ L P +
Sbjct: 331 --------ILVSGNADSTVKIWDIKT-GQCLQTLQGPNK 360
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 68/294 (23%), Positives = 126/294 (42%), Gaps = 55/294 (18%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKS---NSGLVKAIIISGDSNKIF 177
I L G+ + +GSD ++VW K L+ G +S + IIISG +++
Sbjct: 122 ITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDR-- 179
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSV-------- 229
+++W + +H G T + ++ K V R+ ++
Sbjct: 180 ------TLKVWN-AETGECIHTLYGHTSTVRCM---HLHEKRVVSGSRDATLRVWDIETG 229
Query: 230 ----LKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVA 285
+ + H AV C+ + + + SG++D +KVW CL ++ H + + S+
Sbjct: 230 QCLHVLMGHVAAVRCVQYDGRR--VVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSL-- 285
Query: 286 GFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344
FD + V +GS D +++VW E T +C+ L H++ + + + ++ G++
Sbjct: 286 QFDGIHVVSGSLDTSIRVWDVE-----TGNCI-HTLTGHQSLTSGMELKDN--ILVSGNA 337
Query: 345 DGLVNFWECEKHLSHGGVLRG------HKMAVLCLAAAGNLVFSGSADRNICLW 392
D V W+ + G L+ H+ AV CL N V + S D + LW
Sbjct: 338 DSTVKIWD----IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Score = 60.1 bits (144), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 55/190 (28%), Positives = 80/190 (42%), Gaps = 29/190 (15%)
Query: 262 WRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL 321
WR + K + + HDD + + + + + +GS D T+KVW + GK CL + L+
Sbjct: 103 WRRGELKSPKVLKGHDDHVITCLQFCGNRIVSGSDDNTLKVW-SAVTGK----CL-RTLV 156
Query: 322 KHENAVTALAVNQESAVVYCGSSDGLVNFWECEK-HLSHGGVLRGHKMAVLCLAAAGNLV 380
H V + ++ GS+D + W E H L GH V C+ V
Sbjct: 157 GHTGGV--WSSQMRDNIIISGSTDRTLKVWNAETGECIH--TLYGHTSTVRCMHLHEKRV 212
Query: 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
SGS D + +W E CL VL GH V+C+ + R V S
Sbjct: 213 VSGSRDATLRVWDIETG---QCLHVLMGHVAAVRCVQYDGRR---------------VVS 254
Query: 441 GSLDKSVKVW 450
G+ D VKVW
Sbjct: 255 GAYDFMVKVW 264
Score = 57.0 bits (136), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 58/252 (23%), Positives = 112/252 (44%), Gaps = 34/252 (13%)
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAI-IISGDSNKI 176
++V G ++S +++ +GS + ++VW N + + G + + ++
Sbjct: 154 TLVGHTGGVWSSQMRDNIIISGSTDRTLKVW-NAETGECIHTLYGHTSTVRCMHLHEKRV 212
Query: 177 FTGHQDGKIRIWKVSRKNASVHKRVGSLPTFK--DYVKSSVNPKNYVEVRRNRSVLKIRH 234
+G +D +R+W + +H +G + + Y V Y ++K+
Sbjct: 213 VSGSRDATLRVWDIE-TGQCLHVLMGHVAAVRCVQYDGRRVVSGAY------DFMVKVWD 265
Query: 235 YDAVSCL-----------SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV 283
+ +CL SL + + SGS D +++VW + C+ ++ H ++ S
Sbjct: 266 PETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGH-QSLTSG 324
Query: 284 VAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVY 340
+ D+++ +G+AD TVK+W + T CL Q L KH++AVT L N+ V
Sbjct: 325 MELKDNILVSGNADSTVKIWDIK-----TGQCL-QTLQGPNKHQSAVTCLQFNKN--FVI 376
Query: 341 CGSSDGLVNFWE 352
S DG V W+
Sbjct: 377 TSSDDGTVKLWD 388
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 80.1 bits (196), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 79/332 (23%), Positives = 135/332 (40%), Gaps = 43/332 (12%)
Query: 133 GDLLYTGSDSKNIRVW-KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191
G + + SD K +++W +N + +S V + S D I + D +++W
Sbjct: 274 GQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWN-- 331
Query: 192 RKNASVHKRVG--------SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCL 241
R + G + + S+ + K RN +L+ H +V +
Sbjct: 332 RNGQHLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGV 391
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV-AGFDSLVFTGSADGTV 300
+ + + + S S DKT+K+W + + L+++ H ++ V + D + + S D TV
Sbjct: 392 AFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGHSSSVWGVAFSPDDQTIASASDDKTV 450
Query: 301 KVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHG 360
K+W R Q L Q L H ++V +A + + + S D V W L
Sbjct: 451 KLWNRNGQ-------LLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ- 502
Query: 361 GVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418
L GH +V + + G + S S D+ + LW R L LTGH+ V +A
Sbjct: 503 -TLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ----LLQTLTGHSSSVWGVAF 557
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
D T+ S S DK+VK+W
Sbjct: 558 SPDGQ-------------TIASASSDKTVKLW 576
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 75/313 (23%), Positives = 129/313 (41%), Gaps = 42/313 (13%)
Query: 151 LKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVG-------- 202
+KE + +++S V+ + S D I + D +++W +R + G
Sbjct: 6 VKERNRLEAHSSSVRGVAFSPDGQTIASASDDKTVKLW--NRNGQLLQTLTGHSSSVWGV 63
Query: 203 SLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLK 260
+ + S+ + K RN +L+ H +V ++ + + + S S DKT+K
Sbjct: 64 AFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 123
Query: 261 VWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQV 319
+W + + L+++ H ++ V D + + S D TVK+W R Q L Q
Sbjct: 124 LWN-RNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQ-------LLQT 175
Query: 320 LLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAG 377
L H ++V +A + + + S D V W L L GH +V + + G
Sbjct: 176 LTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQ--TLTGHSSSVRGVAFSPDG 233
Query: 378 NLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWT 437
+ S S D+ + LW R L LTGH+ V +A D T
Sbjct: 234 QTIASASDDKTVKLWNRNG----QLLQTLTGHSSSVNGVAFRPDGQ-------------T 276
Query: 438 VYSGSLDKSVKVW 450
+ S S DK+VK+W
Sbjct: 277 IASASDDKTVKLW 289
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 79.0 bits (193), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 108/248 (43%), Gaps = 48/248 (19%)
Query: 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
R+ L+ ++CL E + +G+ DK ++V+ + K L ++ HD + ++
Sbjct: 114 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 287 FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSS 344
++ +GS D TV+VW + K C V H + V L + + + Y GS
Sbjct: 172 HGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 345 DGLVNFWECEKHLS---HG-------------------GVLRGHKMAVLCLAAAGNLVFS 382
D ++ W+ K S HG GVLRGH +V ++ GN+V S
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 285
Query: 383 GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442
GS D + +W + CL +L+GHT + +DHE R S S
Sbjct: 286 GSYDNTLIVW---DVAQMKCLYILSGHTDRIYSTI------YDHE-------RKRCISAS 329
Query: 443 LDKSVKVW 450
+D ++++W
Sbjct: 330 MDTTIRIW 337
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 120/271 (44%), Gaps = 25/271 (9%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIISGDSN--KIF 177
+G +++L A G +L +GS + +RVW K F+ ++ V+ + I N I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
TG +D + +WK+ +++ S+P D+ + P + N + +
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHM 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
S +++ ++ SGS+D TL VW ++ KCL ++ H D I S + + + S
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASM 330
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356
D T+++W E G+ L L H V L ++ + V ++DG + W+ +
Sbjct: 331 DTTIRIWDLE-NGE-----LMYTLQGHTALVGLLRLSDKFLV--SAAADGSIRGWDANDY 382
Query: 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387
+ A+ + N++ SGS ++
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 351 WECEKHLSHGGVLRGHKMAVL-CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409
W K + LRGH +V+ CL N V +G+ D+ I R +S L L+GH
Sbjct: 105 WYNPKFVPQRTTLRGHMTSVITCLQFEDNYVITGADDKMI---RVYDSINKKFLLQLSGH 161
Query: 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
G V L +Y G + SGS D++V+VW + +
Sbjct: 162 DGGVWAL----------KYAHGG----ILVSGSTDRTVRVWDIKK 192
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 77.4 bits (189), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 64/248 (25%), Positives = 107/248 (43%), Gaps = 48/248 (19%)
Query: 227 RSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
R+ L+ ++CL E + +G+ DK ++V+ + K L ++ HD + ++
Sbjct: 114 RTTLRGHXTSVITCLQF--EDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWALKYA 171
Query: 287 FDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC--GSS 344
++ +GS D TV+VW + K C V H + V L + + + Y GS
Sbjct: 172 HGGILVSGSTDRTVRVWDIK------KGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 225
Query: 345 DGLVNFWECEKHLS---HG-------------------GVLRGHKMAVLCLAAAGNLVFS 382
D ++ W+ K S HG GVLRGH +V ++ GN+V S
Sbjct: 226 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVS 285
Query: 383 GSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442
GS D + +W + CL +L+GHT + +DHE R S S
Sbjct: 286 GSYDNTLIVW---DVAQXKCLYILSGHTDRIYSTI------YDHE-------RKRCISAS 329
Query: 443 LDKSVKVW 450
D ++++W
Sbjct: 330 XDTTIRIW 337
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 62/271 (22%), Positives = 120/271 (44%), Gaps = 25/271 (9%)
Query: 123 EGHIYSLA-ASGDLLYTGSDSKNIRVWKNLKEFSG--FKSNSGLVKAIIISGDSN--KIF 177
+G +++L A G +L +GS + +RVW K F+ ++ V+ + I N I
Sbjct: 162 DGGVWALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIV 221
Query: 178 TGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
TG +D + +WK+ +++ S+P D+ + P + N + +
Sbjct: 222 TGSRDNTLHVWKLPKES--------SVP---DHGEEHDYPLVFHTPEENPYFVGVLRGHX 270
Query: 238 VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSA 296
S +++ ++ SGS+D TL VW ++ KCL ++ H D I S + + + S
Sbjct: 271 ASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCLYILSGHTDRIYSTIYDHERKRCISASX 330
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356
D T+++W E G+ L L H V L ++ + V ++DG + W+ +
Sbjct: 331 DTTIRIWDLE-NGE-----LXYTLQGHTALVGLLRLSDKFLV--SAAADGSIRGWDANDY 382
Query: 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADR 387
+ A+ + N++ SGS ++
Sbjct: 383 SRKFSYHHTNLSAITTFYVSDNILVSGSENQ 413
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 47/105 (44%), Gaps = 18/105 (17%)
Query: 351 WECEKHLSHGGVLRGHKMAVL-CLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409
W K + LRGH +V+ CL N V +G+ D+ I R +S L L+GH
Sbjct: 105 WYNPKFVPQRTTLRGHXTSVITCLQFEDNYVITGADDKXI---RVYDSINKKFLLQLSGH 161
Query: 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
G V L +Y G + SGS D++V+VW + +
Sbjct: 162 DGGVWAL----------KYAHGG----ILVSGSTDRTVRVWDIKK 192
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 75.9 bits (185), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 76/282 (26%), Positives = 117/282 (41%), Gaps = 65/282 (23%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLK 231
D KI +G +D I+IW KN +E +R +
Sbjct: 142 DDQKIVSGLRDNTIKIWD----------------------------KNTLECKR----IL 169
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
H +V CL ++ ++ +GS D T++VW ++ + L ++ H +A+ + + ++
Sbjct: 170 TGHTGSVLCLQY--DERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFN-NGMM 226
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
T S D ++ VW T L +VL+ H AV V+ + + S D + W
Sbjct: 227 VTCSKDRSIAVWD---MASPTDITLRRVLVGHRAAVNV--VDFDDKYIVSASGDRTIKVW 281
Query: 352 E---CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408
CE L GHK + CL LV SGS+D I LW E GA CL VL G
Sbjct: 282 NTSTCE----FVRTLNGHKRGIACLQYRDRLVVSGSSDNTIRLW-DIECGA--CLRVLEG 334
Query: 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
H V+C+ + R + SG+ D +KVW
Sbjct: 335 HEELVRCIRFDNKR---------------IVSGAYDGKIKVW 361
Score = 60.8 bits (146), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 83/340 (24%), Positives = 128/340 (37%), Gaps = 80/340 (23%)
Query: 126 IYSLAASGDLLYTGSDSKNIRVW-KNLKEFSGFKS-NSGLVKAIIISGDSNKIFTGHQDG 183
+Y L + +G I++W KN E + ++G V + + D I TG D
Sbjct: 136 VYCLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSV--LCLQYDERVIITGSSDS 193
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
+R+W V+ L T I H +AV L L
Sbjct: 194 TVRVWDVNTGEM--------LNTL------------------------IHHCEAV--LHL 219
Query: 244 NAEQGLLYSGSWDKTLKVWRI---SDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTV 300
G++ + S D+++ VW + +D + H A+N VV D + + S D T+
Sbjct: 220 RFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVN-VVDFDDKYIVSASGDRTI 278
Query: 301 KVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW--ECEKHL 357
KVW T C + L H+ + L +V GSSD + W EC L
Sbjct: 279 KVW-------NTSTCEFVRTLNGHKRGIACLQYRDR--LVVSGSSDNTIRLWDIECGACL 329
Query: 358 SHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWR-------REESGAHSCLAVLTGHT 410
VL GH+ V C+ + SG+ D I +W R +G CL L H+
Sbjct: 330 R---VLEGHEELVRCIRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGT-LCLRTLVEHS 385
Query: 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
G V L +E + + S S D ++ +W
Sbjct: 386 GRVFRLQFDE---------------FQIVSSSHDDTILIW 410
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/166 (27%), Positives = 69/166 (41%), Gaps = 24/166 (14%)
Query: 288 DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347
D + +G D T+K+W K T C ++L H +V L ++ V+ GSSD
Sbjct: 143 DQKIVSGLRDNTIKIW-----DKNTLEC-KRILTGHTGSVLCLQYDER--VIITGSSDST 194
Query: 348 VNFWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
V W+ L H AVL L ++ + S DR+I +W + VL
Sbjct: 195 VRVWDVNTG-EMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRRVLV 253
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
GH V + D D +Y + S S D+++KVW S
Sbjct: 254 GHRAAVNVV------DFDDKY---------IVSASGDRTIKVWNTS 284
Score = 50.1 bits (118), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 61/278 (21%), Positives = 108/278 (38%), Gaps = 50/278 (17%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAII-ISGDSNKIFTGHQD 182
G + L ++ TGS +RVW ++ + +A++ + ++ + T +D
Sbjct: 174 GSVLCLQYDERVIITGSSDSTVRVW-DVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKD 232
Query: 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242
I +W ++ +RV + H AV+ +
Sbjct: 233 RSIAVWDMASPTDITLRRV-----------------------------LVGHRAAVNVVD 263
Query: 243 LNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKV 302
+ + + S S D+T+KVW S C+ + ++N H I + + D LV +GS+D T+++
Sbjct: 264 FDDK--YIVSASGDRTIKVWNTSTCEFVRTLNGHKRGI-ACLQYRDRLVVSGSSDNTIRL 320
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGG- 361
W E CL +VL HE V + + + V G+ DG + W+ L
Sbjct: 321 WDIECGA-----CL-RVLEGHEELVRCIRFDNKRIV--SGAYDGKIKVWDLVAALDPRAP 372
Query: 362 -------VLRGHKMAVLCLAAAGNLVFSGSADRNICLW 392
L H V L + S S D I +W
Sbjct: 373 AGTLCLRTLVEHSGRVFRLQFDEFQIVSSSHDDTILIW 410
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 41/104 (39%), Gaps = 19/104 (18%)
Query: 351 WECEKH-LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409
W C +H L V CL + SG D I +W + C +LTGH
Sbjct: 116 WRCGRHSLQRIHCRSETSKGVYCLQYDDQKIVSGLRDNTIKIW---DKNTLECKRILTGH 172
Query: 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
TG V CL +E + +GS D +V+VW V+
Sbjct: 173 TGSVLCLQYDER---------------VIITGSSDSTVRVWDVN 201
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 75.5 bits (184), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 55 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 111
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 112 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 139
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 140 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 200 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 250
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 251 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 307
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 308 STACHPTEN-------------IIASAALENDKTIKLWK 333
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 88 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 145
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 146 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 199
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 200 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 253
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 254 YTGHKNEKYCIFA--------NFSVTGG-KWIV-SGSEDNLVYIWNL 290
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 98 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 157
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 158 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 205
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 206 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 265
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 266 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 319
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 320 SAALENDKTIKLWKSD 335
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 46 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 105
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 106 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 159
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 160 VKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 212
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 213 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 247
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 75.1 bits (183), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 53 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 109
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 110 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 137
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 138 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 198 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 248
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 249 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 305
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 306 STACHPTEN-------------IIASAALENDKTIKLWK 331
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 86 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 143
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 144 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 197
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 198 WDTASGQCLKTLIDDD---NPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 251
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 252 YTGHKNEKYCIFA--------NFSVTGG-KWIV-SGSEDNLVYIWNL 288
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 96 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 155
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 156 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 203
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 204 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 263
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 264 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 317
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 318 SAALENDKTIKLWKSD 333
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 44 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 103
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 104 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 157
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 158 VKTGKCLKTLP----AHSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 210
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 211 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 245
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 75.1 bits (183), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 93
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 94 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 121
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 182 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 232
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 289
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 290 STACHPTEN-------------IIASAALENDKTIKLWK 315
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 182 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 235
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 236 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 272
Score = 53.5 bits (127), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 140 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 301
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 302 SAALENDKTIKLWKSD 317
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 48 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 104
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 105 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 132
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 133 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 193 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 243
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 244 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 300
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 301 STACHPTEN-------------IIASAALENDKTIKLWK 326
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 81 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 138
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 139 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 192
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 193 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 246
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 247 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 283
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 91 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 150
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 151 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 198
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 199 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 258
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 259 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 312
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 313 SAALENDKTIKLWKSD 328
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 87
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 88 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 115
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 176 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 226
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 283
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 284 STACHPTEN-------------IIASAALENDKTIKLWK 309
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 176 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 229
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 230 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 266
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 134 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 295
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 296 SAALENDKTIKLWKSD 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 82 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 136 VKTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 188
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 189 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 223
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 74.3 bits (181), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 93
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 94 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 121
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 182 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 232
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 289
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 290 STACHPTEN-------------IIASAALENDKTIKLWK 315
Score = 69.3 bits (168), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 182 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 235
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 236 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 272
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 140 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 301
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 302 SAALENDKTIKLWKSD 317
Score = 50.8 bits (120), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 88 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 142 VKTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 194
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 195 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 229
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 31 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 87
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 88 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 115
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 116 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 176 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 226
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 227 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 283
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 284 STACHPTEN-------------IIASAALENDKTIKLWK 309
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 64 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 121
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 122 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 175
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 176 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 229
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 230 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 266
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 74 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 133
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 134 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 181
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 182 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 241
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 242 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 295
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 296 SAALENDKTIKLWKSD 311
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 22 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 81
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 82 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 135
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 136 VKTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 188
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 189 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 223
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 27 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 83
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 84 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 111
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 112 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 172 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 222
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 223 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 279
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 280 STACHPTEN-------------IIASAALENDKTIKLWK 305
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 60 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 117
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 118 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 171
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 172 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 225
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 226 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 262
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 70 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 129
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 130 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 177
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 178 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 237
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 238 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 291
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 292 SAALENDKTIKLWKSD 307
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 37 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 93
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 94 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 121
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 122 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 182 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 232
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 233 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 289
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 290 STACHPTEN-------------IIASAALENDKTIKLWK 315
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 70 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 127
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 128 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 181
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 182 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 235
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 236 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 272
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 80 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 139
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 140 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 187
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 188 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 247
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 248 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 301
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 302 SAALENDKTIKLWKSD 317
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 28 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 87
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 88 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 141
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 142 VKTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 194
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 195 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 229
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 32 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 88
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 89 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 116
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 117 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 177 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 227
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 228 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 284
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 285 STACHPTEN-------------IIASAALENDKTIKLWK 310
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 65 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 122
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 123 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 176
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 177 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 230
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 231 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 267
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 75 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 134
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 135 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 182
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 183 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 242
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 243 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 296
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 297 SAALENDKTIKLWKSD 312
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 30 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 86
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 87 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 114
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 115 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 175 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 225
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 226 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 282
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 283 STACHPTEN-------------IIASAALENDKTIKLWK 308
Score = 68.9 bits (167), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 63 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 120
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 121 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 174
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 175 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 228
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 229 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 265
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 73 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 132
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 133 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 180
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 181 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 240
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 241 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 294
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 295 SAALENDKTIKLWKSD 310
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 135/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 36 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 92
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 93 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 120
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 121 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 181 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 231
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 232 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 288
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 289 STACHPTEN-------------IIASAALENDKTIKLWK 314
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 69 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 126
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 127 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 180
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 181 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 234
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 235 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 271
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 79 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 138
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 139 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 186
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 187 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 246
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 247 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 300
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 301 SAALENDKTIKLWKSD 316
Score = 50.4 bits (119), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 94/227 (41%), Gaps = 31/227 (13%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 27 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 86
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 87 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 140
Query: 353 -----CEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLT 407
C K L ++ + G+L+ S S D +W ++ + CL L
Sbjct: 141 VKTGKCLKTLPA----HSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLI 193
Query: 408 GHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 194 DDDNPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 228
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 144/367 (39%), Gaps = 81/367 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
P PN L+ + G ++ + + +G+ L + S K I++W K K S
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSV 215
G K + + S DSN + + D ++IW VS L T K
Sbjct: 66 GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------LKTLKG------ 108
Query: 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
H + V C + N + L+ SGS+D+++++W + CL+++ A
Sbjct: 109 ------------------HSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334
H D +++V D SL+ + S DG ++W + CL ++ V+ + +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLR---GHKMAVLCLAA-----AGNLVFSGSAD 386
+ + D + W+ S G L+ GHK C+ A G + SGS D
Sbjct: 206 NGKYILAATLDNTLKLWD----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL--D 444
+ +W + + L GHT V A + + S +L D
Sbjct: 262 NMVYIWNLQ---TKEIVQKLQGHTDVVISTACHPTEN-------------IIASAALEND 305
Query: 445 KSVKVWR 451
K++K+W+
Sbjct: 306 KTIKLWK 312
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 179 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 232
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 233 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNMVYIWNL 269
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 57/256 (22%), Positives = 99/256 (38%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V + +LP D P + V R+ S++ YD
Sbjct: 137 WDVKTGMC-----LKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 298
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 299 SAALENDKTIKLWKSD 314
Score = 51.2 bits (121), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 58/224 (25%), Positives = 95/224 (42%), Gaps = 25/224 (11%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H AVS + + L S S DK +K+W D K ++I+ H I+ V DS L+
Sbjct: 25 HTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLGISDVAWSSDSNLLV 84
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWE 352
+ S D T+K+W GK CL + L H N V N +S ++ GS D V W+
Sbjct: 85 SASDDKTLKIWDVS-SGK----CL-KTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRIWD 138
Query: 353 CEKHLSHGGVLRGHK--MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410
+ + L H ++ + G+L+ S S D +W ++ + CL L
Sbjct: 139 VKTGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIW---DTASGQCLKTLIDDD 194
Query: 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
P ++ G + + +LD ++K+W S+
Sbjct: 195 NPPVSFV---------KFSPNGKY---ILAATLDNTLKLWDYSK 226
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 82/367 (22%), Positives = 144/367 (39%), Gaps = 81/367 (22%)
Query: 101 PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVW-----KNLKEFS 155
P PN L+ + G ++ + + +G+ L + S K I++W K K S
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVK-----FSPNGEWLASSSADKLIKIWGAYDGKFEKTIS 65
Query: 156 GFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSV 215
G K + + S DSN + + D ++IW VS L T K
Sbjct: 66 GHKLG---ISDVAWSSDSNLLVSASDDKTLKIWDVSSGKC--------LKTLK------- 107
Query: 216 NPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINA 275
H + V C + N + L+ SGS+D+++++W + CL+++ A
Sbjct: 108 -----------------GHSNYVFCCNFNPQSNLIVSGSFDESVRIWDVKTGMCLKTLPA 150
Query: 276 HDDAINSVVAGFD-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ 334
H D +++V D SL+ + S DG ++W + CL ++ V+ + +
Sbjct: 151 HSDPVSAVHFNRDGSLIVSSSYDGLCRIWDT-----ASGQCLKTLIDDDNPPVSFVKFSP 205
Query: 335 ESAVVYCGSSDGLVNFWECEKHLSHGGVLR---GHKMAVLCLAA-----AGNLVFSGSAD 386
+ + D + W+ S G L+ GHK C+ A G + SGS D
Sbjct: 206 NGKYILAATLDNDLKLWD----YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSED 261
Query: 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSL--D 444
+ +W + + L GHT V A + + S +L D
Sbjct: 262 NMVYIWNLQ---TKEIVQKLQGHTDVVISTACHPTEN-------------IIASAALEND 305
Query: 445 KSVKVWR 451
K++K+W+
Sbjct: 306 KTIKLWK 312
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 105/227 (46%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D ++ LW + CL
Sbjct: 179 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKG---KCLKT 232
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 233 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNMVYIWNL 269
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 56/256 (21%), Positives = 98/256 (38%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V + +LP D P + V R+ S++ YD
Sbjct: 137 WDVKTGMC-----LKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D LK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 245 ANFSVTGGKWIVSGSEDNMVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 298
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 299 SAALENDKTIKLWKSD 314
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 72.8 bits (177), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 78/339 (23%), Positives = 134/339 (39%), Gaps = 76/339 (22%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L S K I++W K K SG K + + S DSN + + D
Sbjct: 34 FSPNGEWLAASSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 90
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 91 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 118
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 179 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 229
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVK 414
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVVI 286
Query: 415 CLAVEEDRDHDHEYHQKGDQRWTVYSGSL--DKSVKVWR 451
A + + S +L DK++K+W+
Sbjct: 287 STACHPTEN-------------IIASAALENDKTIKLWK 312
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 179 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 232
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 233 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 269
Score = 52.4 bits (124), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 58/256 (22%), Positives = 100/256 (39%), Gaps = 49/256 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 137 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENIIA 298
Query: 341 CGS--SDGLVNFWECE 354
+ +D + W+ +
Sbjct: 299 SAALENDKTIKLWKSD 314
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 29/146 (19%)
Query: 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW-----ECEKHLSHGGVLRGHKM 368
+ L L H AV+++ + + S+D L+ W + EK +S GHK+
Sbjct: 16 YALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAYDGKFEKTIS------GHKL 69
Query: 369 AV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDH 426
+ + ++ NL+ S S D+ + +W + + CL L GH+ V C
Sbjct: 70 GISDVAWSSDSNLLVSASDDKTLKIW---DVSSGKCLKTLKGHSNYVFCCNFNP------ 120
Query: 427 EYHQKGDQRWTVYSGSLDKSVKVWRV 452
Q + SGS D+SV++W V
Sbjct: 121 -------QSNLIVSGSFDESVRIWDV 139
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 72.4 bits (176), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 61/299 (20%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 90
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 91 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 118
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 179 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 229
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVV 285
Score = 68.6 bits (166), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 179 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 232
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 233 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 269
Score = 52.0 bits (123), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 47/239 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 137 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENII 297
Score = 34.7 bits (78), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 37/201 (18%)
Query: 134 DLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191
+L+ +GS +++R+W K K ++S V A+ + D + I + DG RIW +
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 192 RKNASVHKRVGSLPTFKD-------YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244
L T D +VK S N K Y+ + LK+ Y CL
Sbjct: 183 SGQC--------LKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTY 233
Query: 245 A----EQGLLY------------SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
E+ ++ SGS D + +W + + ++ + H D + S
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 289 SLVFTGSA---DGTVKVWRRE 306
+ +A D T+K+++ +
Sbjct: 294 ENIIASAALENDKTIKLYKSD 314
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 72.4 bits (176), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 71/299 (23%), Positives = 121/299 (40%), Gaps = 61/299 (20%)
Query: 129 LAASGDLLYTGSDSKNIRVW-----KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
+ +G+ L + S K I++W K K SG K + + S DSN + + D
Sbjct: 34 FSPNGEWLASSSADKLIKIWGAYDGKFEKTISGHKLG---ISDVAWSSDSNLLVSASDDK 90
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
++IW VS L T K H + V C +
Sbjct: 91 TLKIWDVSSGKC--------LKTLKG------------------------HSNYVFCCNF 118
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKV 302
N + L+ SGS+D+++++W + KCL+++ AH D +++V D SL+ + S DG ++
Sbjct: 119 NPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 303 WRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGV 362
W + CL ++ V+ + + + + D + W+ S G
Sbjct: 179 WDT-----ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWD----YSKGKC 229
Query: 363 LR---GHKMAVLCLAA-----AGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPV 413
L+ GHK C+ A G + SGS D + +W + + L GHT V
Sbjct: 230 LKTYTGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQ---TKEIVQKLQGHTDVV 285
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 59/227 (25%), Positives = 104/227 (45%), Gaps = 32/227 (14%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H +S ++ +++ LL S S DKTLK+W +S KCL+++ H + + F+ +L
Sbjct: 67 HKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV--FCCNFNPQSNL 124
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ +GS D +V++W + T CL + L H + V+A+ N++ +++ S DGL
Sbjct: 125 IVSGSFDESVRIWDVK-----TGKCL-KTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRI 178
Query: 351 W-----ECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAV 405
W +C K L ++ + + G + + + D + LW + CL
Sbjct: 179 WDTASGQCLKTLIDD---DNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKG---KCLKT 232
Query: 406 LTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRV 452
TGH C+ + G +W V SGS D V +W +
Sbjct: 233 YTGHKNEKYCIFA--------NFSVTG-GKWIV-SGSEDNLVYIWNL 269
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 93/239 (38%), Gaps = 47/239 (19%)
Query: 130 AASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRI 187
++ +LL + SD K +++W + K K +S V + SN I +G D +RI
Sbjct: 77 SSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLIVSGSFDESVRI 136
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA---------- 237
W V K + +LP D P + V R+ S++ YD
Sbjct: 137 WDV-----KTGKCLKTLPAHSD-------PVSAVHFNRDGSLIVSSSYDGLCRIWDTASG 184
Query: 238 -------------VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVV 284
VS + + + + + D TLK+W S KCL++ H + +
Sbjct: 185 QCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGHKNEKYCIF 244
Query: 285 AGFD----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339
A F + +GS D V +W LQ K + Q L H + V + A + ++
Sbjct: 245 ANFSVTGGKWIVSGSEDNLVYIWN--LQTKE----IVQKLQGHTDVVISTACHPTENII 297
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 44/201 (21%), Positives = 80/201 (39%), Gaps = 37/201 (18%)
Query: 134 DLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS 191
+L+ +GS +++R+W K K ++S V A+ + D + I + DG RIW +
Sbjct: 123 NLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLCRIWDTA 182
Query: 192 RKNASVHKRVGSLPTFKD-------YVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244
L T D +VK S N K Y+ + LK+ Y CL
Sbjct: 183 SGQC--------LKTLIDDDNPPVSFVKFSPNGK-YILAATLDNTLKLWDYSKGKCLKTY 233
Query: 245 A----EQGLLY------------SGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
E+ ++ SGS D + +W + + ++ + H D + S
Sbjct: 234 TGHKNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNLQTKEIVQKLQGHTDVVISTACHPT 293
Query: 289 SLVFTGSA---DGTVKVWRRE 306
+ +A D T+K+++ +
Sbjct: 294 ENIIASAALENDKTIKLFKSD 314
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 56/198 (28%), Positives = 92/198 (46%), Gaps = 31/198 (15%)
Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLVKAIIISGDSNKIFTGHQDGKI 185
D++ + S K+I +WK K+ + +S V+ +++S D +G DG++
Sbjct: 395 ADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSSDGQFALSGSWDGEL 454
Query: 186 RIWKVSRKNASVHKRVGSLPTFKDY--VKSSVNPKNYVEVRRNRSVLKIR---------- 233
R+W ++ S + VG KD V S++ + V R+R++
Sbjct: 455 RLWDLA-AGVSTRRFVGHT---KDVLSVAFSLDNRQIVSASRDRTIKLWNTLGECKYTIS 510
Query: 234 -----HYDAVSC--LSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAG 286
H D VSC S N Q + S SWDKT+KVW +S+CK ++ H +++V
Sbjct: 511 EGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVS 570
Query: 287 FD-SLVFTGSADGTVKVW 303
D SL +G DG V +W
Sbjct: 571 PDGSLCASGGKDGVVLLW 588
Score = 53.1 bits (126), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 52/203 (25%), Positives = 89/203 (43%), Gaps = 26/203 (12%)
Query: 234 HYDAVSCLSLNAEQG-LLYSGSWDKTLKVWRIS-DCKCL----ESINAHDDAINSVVAGF 287
H D V+ ++ + ++ S S DK++ +W+++ D K + H + VV
Sbjct: 381 HTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTGHSHFVEDVVLSS 440
Query: 288 D-SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDG 346
D +GS DG +++W G T+ + H V ++A + ++ + S D
Sbjct: 441 DGQFALSGSWDGELRLWDLA-AGVSTRR-----FVGHTKDVLSVAFSLDNRQIVSASRDR 494
Query: 347 LVNFW----ECEKHLSHGGVLRGHKMAVLCLAAAGNL----VFSGSADRNICLWRREESG 398
+ W EC+ +S GG GH+ V C+ + N + S S D+ + +W
Sbjct: 495 TIKLWNTLGECKYTISEGG--EGHRDWVSCVRFSPNTLQPTIVSASWDKTVKVWNLSNCK 552
Query: 399 AHSCLAVLTGHTGPVKCLAVEED 421
S LA GHTG V +AV D
Sbjct: 553 LRSTLA---GHTGYVSTVAVSPD 572
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/187 (24%), Positives = 79/187 (42%), Gaps = 19/187 (10%)
Query: 272 SINAHDDAINSVVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQV-LLKHENAVT 328
++ AH D + ++ D+ ++ + S D ++ +W+ L + +AQ L H + V
Sbjct: 377 TMRAHTDMVTAIATPIDNADIIVSASRDKSIILWK--LTKDDKAYGVAQRRLTGHSHFVE 434
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+ ++ + GS DG + W+ +S + GH VL +A + + S S D
Sbjct: 435 DVVLSSDGQFALSGSWDGELRLWDLAAGVSTRRFV-GHTKDVLSVAFSLDNRQIVSASRD 493
Query: 387 RNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKS 446
R I LW ++ GH V C+ + T+ S S DK+
Sbjct: 494 RTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQP-----------TIVSASWDKT 542
Query: 447 VKVWRVS 453
VKVW +S
Sbjct: 543 VKVWNLS 549
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/23 (43%), Positives = 16/23 (69%)
Query: 170 SGDSNKIFTGHQDGKIRIWKVSR 192
S D + +F+G+ DG IR+W + R
Sbjct: 671 SADGSTLFSGYTDGVIRVWGIGR 693
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 62/246 (25%), Positives = 106/246 (43%), Gaps = 55/246 (22%)
Query: 128 SLAASGDLLYTGSDSKNIRVWK-----NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD 182
S+ +GD + + S K I++W+ +K F+G + V+ + + D I + D
Sbjct: 199 SIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE---WVRMVRPNQDGTLIASCSND 255
Query: 183 GKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLS 242
+R+W V+ K E+R +R V++ + S S
Sbjct: 256 QTVRVWVVATKECKA------------------------ELREHRHVVECISWAPESSYS 291
Query: 243 LNAEQG------------LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS- 289
+E L SGS DKT+K+W +S CL ++ HD+ + V+ F S
Sbjct: 292 SISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTLVGHDNWVRGVL--FHSG 349
Query: 290 --LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGL 347
+ + + D T++VW + K C+ + L HE+ VT+L ++ + V GS D
Sbjct: 350 GKFILSCADDKTLRVWDYK-----NKRCM-KTLNAHEHFVTSLDFHKTAPYVVTGSVDQT 403
Query: 348 VNFWEC 353
V WEC
Sbjct: 404 VKVWEC 409
Score = 65.5 bits (158), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 68/277 (24%), Positives = 114/277 (41%), Gaps = 78/277 (28%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H D+V +S + LL S S D T+K+W +C+ +++ HD ++SV + +
Sbjct: 149 HTDSVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIV 208
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW- 351
+ S D T+K+W E+Q T +C+ + H V + NQ+ ++ S+D V W
Sbjct: 209 SASRDKTIKMW--EVQ---TGYCV-KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV 262
Query: 352 ----ECEKHLSHGGVLRGHKMAVLCLAAA----------------------GNLVFSGSA 385
EC+ L R H+ V C++ A G + SGS
Sbjct: 263 VATKECKAEL------REHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSR 316
Query: 386 DRNICLWRREESGAHSCLAVLTGHTGPVK----------CLAVEEDRD------------ 423
D+ I +W + CL L GH V+ L+ +D+
Sbjct: 317 DKTIKMW---DVSTGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCM 373
Query: 424 -----HDH-----EYHQKGDQRWTVYSGSLDKSVKVW 450
H+H ++H+ V +GS+D++VKVW
Sbjct: 374 KTLNAHEHFVTSLDFHKTAPY---VVTGSVDQTVKVW 407
Score = 52.8 bits (125), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 55/232 (23%), Positives = 100/232 (43%), Gaps = 24/232 (10%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD---SL 290
H V+ + + ++ S S D T+KVW ++ H D++ + FD L
Sbjct: 107 HRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDI--SFDHSGKL 164
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ + SAD T+K+W + QG C+ + + H++ V+++++ + S D +
Sbjct: 165 LASCSADMTIKLW--DFQG---FECI-RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKM 218
Query: 351 WECEKHLSHGGVLRGHKMAVLCLA--AAGNLVFSGSADRNICLWRREESGAHSCLAVLTG 408
WE + GH+ V + G L+ S S D+ + +W C A L
Sbjct: 219 WEVQTGYC-VKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWV---VATKECKAELRE 274
Query: 409 HTGPVKCLAVEEDRDHD-------HEYHQKGDQRWTVYSGSLDKSVKVWRVS 453
H V+C++ + + E + G + SGS DK++K+W VS
Sbjct: 275 HRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVS 326
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 26/126 (20%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 66 SGTRTPTSGEASPYLMSPWNNQPVSPYTKSPWIMPPYSPNENLLSSCNGLIGSIVRKEGH 125
+G+ T SG+ P+L+S ++ + M S L++ L+G G
Sbjct: 297 TGSETKKSGKPGPFLLSGSRDKTIK--------MWDVSTGMCLMT----LVGHDNWVRGV 344
Query: 126 IYSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
++ + G + + +D K +RVW KN + ++ V ++ + + TG D
Sbjct: 345 LFH--SGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKTAPYVVTGSVDQ 402
Query: 184 KIRIWK 189
+++W+
Sbjct: 403 TVKVWE 408
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 61.2 bits (147), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 71/318 (22%), Positives = 118/318 (37%), Gaps = 73/318 (22%)
Query: 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEV 223
++++ S D + TG +D IRIW +
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDI--------------------------------- 152
Query: 224 RRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
NR ++ I H + L L SGS D+T+++W + +C +++ D
Sbjct: 153 -ENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTT 211
Query: 282 SVVA-GFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVL-------LKHENAVTALAVN 333
V+ G + GS D V+VW E L + L H+++V ++
Sbjct: 212 VAVSPGDGKYIAAGSLDRAVRVWDSE------TGFLVERLDSENESGTGHKDSVYSVVFT 265
Query: 334 QESAVVYCGSSDGLVNFW-------ECEKHLSHGGVLR----GHKMAVLCLAAAGN--LV 380
++ V GS D V W + + + G GHK VL +A N +
Sbjct: 266 RDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDFVLSVATTQNDEYI 325
Query: 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
SGS DR + W ++ L +L GH V +AV EY+ +
Sbjct: 326 LSGSKDRGVLFWDKKSGNP---LLMLQGHRNSVISVAVANGSSLGPEYN-------VFAT 375
Query: 441 GSLDKSVKVWRVSEHAPD 458
GS D ++W+ + AP+
Sbjct: 376 GSGDCKARIWKYKKIAPN 393
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 58.9 bits (141), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 100/224 (44%), Gaps = 28/224 (12%)
Query: 106 ENLLSSCNGLIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLKEFSGF----- 157
+++++ L G++ G + +A + D++ + S K I +WK ++ + +
Sbjct: 21 QSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQR 80
Query: 158 --KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSV 215
+ +S V ++IS D +G DG +R+W ++ + + VG SS
Sbjct: 81 ALRGHSHFVSDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSD 139
Query: 216 NPKNYVEVRRNRS-------------VLKIRHYDAVSCL--SLNAEQGLLYSGSWDKTLK 260
N + V R+++ V H + VSC+ S N+ ++ S WDK +K
Sbjct: 140 N-RQIVSGSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVK 198
Query: 261 VWRISDCKCLESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
VW +++CK + H +N+V D SL +G DG +W
Sbjct: 199 VWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 242
Score = 37.4 bits (85), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 23/145 (15%)
Query: 313 KHCLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHK 367
+ L L H VT +A Q ++ S D + W+ + ++ G+ LRGH
Sbjct: 27 QMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHS 86
Query: 368 MAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHD 425
V + +++ G SGS D + LW + + GHT V +A D
Sbjct: 87 HFVSDVVISSDGQFALSGSWDGTLRLW---DLTTGTTTRRFVGHTKDVLSVAFSSDNRQ- 142
Query: 426 HEYHQKGDQRWTVYSGSLDKSVKVW 450
+ SGS DK++K+W
Sbjct: 143 ------------IVSGSRDKTIKLW 155
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 58.9 bits (141), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 51/161 (31%), Positives = 83/161 (51%), Gaps = 22/161 (13%)
Query: 242 SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI--NSVVAGFDSLVFTGSADGT 299
SL+ + G++ SGSWDKT KVW+ + + ++ AH+ ++ VV+ ++ T SAD T
Sbjct: 109 SLSFQDGVVISGSWDKTAKVWK--EGSLVYNLQAHNASVWDAKVVSFSENKFLTASADKT 166
Query: 300 VKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSH 359
+K+W+ + + H + V LAV + + C S+DGL+ + H
Sbjct: 167 IKLWQND-------KVIKTFSGIHNDVVRHLAVVDDGHFISC-SNDGLIKL--VDXHT-- 214
Query: 360 GGVLR---GHKMAVLC--LAAAGNLVFSGSADRNICLWRRE 395
G VLR GH+ V C L G++V G DR + +W +E
Sbjct: 215 GDVLRTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKE 254
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/198 (21%), Positives = 89/198 (44%), Gaps = 10/198 (5%)
Query: 118 SIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKS-NSGLVKAIIISGDSNKI 176
+++ +G++ SL+ ++ +GS K +VWK ++ N+ + A ++S NK
Sbjct: 99 TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKEGSLVYNLQAHNASVWDAKVVSFSENKF 158
Query: 177 FTGHQDGKIRIW---KVSRKNASVHKRVGS-LPTFKDYVKSSVNPKNYVEVRRNRSVLKI 232
T D I++W KV + + +H V L D S + +++ + +
Sbjct: 159 LTASADKTIKLWQNDKVIKTFSGIHNDVVRHLAVVDDGHFISCSNDGLIKLVDXHTGDVL 218
Query: 233 RHYDA----VSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
R Y+ V C+ L ++ G D+T+++W + + I +I SV +
Sbjct: 219 RTYEGHESFVYCIKLLPNGDIVSCGE-DRTVRIWSKENGSLKQVITLPAISIWSVDCXSN 277
Query: 289 SLVFTGSADGTVKVWRRE 306
+ GS+D V+++ +E
Sbjct: 278 GDIIVGSSDNLVRIFSQE 295
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 75/182 (41%), Gaps = 35/182 (19%)
Query: 289 SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLV 348
S V + S DGTV++W ++ Q GT V+ + + ++ + E ++ G D +
Sbjct: 30 SKVASVSRDGTVRLWSKDDQWLGT------VVYTGQGFLNSVCYDSEKELLLFGGKDTXI 83
Query: 349 N----FWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLA 404
N F + + L GH+ V L+ +V SGS D+ +W+ S +
Sbjct: 84 NGVPLFATSGEDPLY--TLIGHQGNVCSLSFQDGVVISGSWDKTAKVWKE-----GSLVY 136
Query: 405 VLTGHTGPV---KCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHAPDLKG 461
L H V K ++ E++ + S DK++K+W+ + G
Sbjct: 137 NLQAHNASVWDAKVVSFSENK---------------FLTASADKTIKLWQNDKVIKTFSG 181
Query: 462 LH 463
+H
Sbjct: 182 IH 183
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 58.5 bits (140), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 53/215 (24%), Positives = 95/215 (44%), Gaps = 28/215 (13%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWKNLKEFSGF-------KSNSGLV 164
L G++ G + +A + D++ + S K I +WK ++ + + + +S V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
++IS D +G DG +R+W ++ + + VG SS N + V
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLWDLT-TGTTTRRFVGHTKDVLSVAFSSDN-RQIVSGS 124
Query: 225 RNRS-------------VLKIRHYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKC 269
R+++ V H + VSC+ S N+ ++ S WDK +KVW +++CK
Sbjct: 125 RDKTIKLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKL 184
Query: 270 LESINAHDDAINSVVAGFD-SLVFTGSADGTVKVW 303
+ H +N+V D SL +G DG +W
Sbjct: 185 KTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLW 219
Score = 37.4 bits (85), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 57/142 (40%), Gaps = 23/142 (16%)
Query: 316 LAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMAV 370
L L H VT +A Q ++ S D + W+ + ++ G+ LRGH V
Sbjct: 7 LRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFV 66
Query: 371 --LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEY 428
+ +++ G SGS D + LW + + GHT V +A D
Sbjct: 67 SDVVISSDGQFALSGSWDGTLRLW---DLTTGTTTRRFVGHTKDVLSVAFSSDNRQ---- 119
Query: 429 HQKGDQRWTVYSGSLDKSVKVW 450
+ SGS DK++K+W
Sbjct: 120 ---------IVSGSRDKTIKLW 132
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 58.5 bits (140), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 124 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
+V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 209
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 28.9 bits (63), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVMSVDIDKKAS---- 120
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 121 ---------MIISGSRDKTIKVWTI 136
Score = 28.5 bits (62), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 35/148 (23%), Positives = 64/148 (43%), Gaps = 22/148 (14%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 169 IISAGNDKMVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNR--SVLKIRHY 235
K A S V SL T S++P+ V+ R K
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWR 263
AVS L+ +A+ L++G D ++VW+
Sbjct: 288 HAVS-LAWSADGQTLFAGYTDNVIRVWQ 314
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 58.2 bits (139), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 124 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
+V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 209
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 169 IISAGNDKMVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNR--SVLKIRHY 235
K A S V SL T S++P+ V+ R K
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
AVS L+ +A+ L++G D ++VW++
Sbjct: 288 HAVS-LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ S D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 28.5 bits (62), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVMSVDIDKKAS---- 120
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 121 ---------MIISGSRDKTIKVWTI 136
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S++
Sbjct: 58 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 117
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 118 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 170
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
+V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 171 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 229
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 3 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 62
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 63 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 99
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 100 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 149
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 203
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 204 LIASAGKDGEIMLW 217
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 163 IISAGNDKMVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 221
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNR--SVLKIRHY 235
K A S V SL T S++P+ V+ R K
Sbjct: 222 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 281
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
AVS L+ +A+ L++G D ++VW++
Sbjct: 282 HAVS-LAWSADGQTLFAGYTDNVIRVWQV 309
Score = 29.6 bits (65), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ S D +F G+ D IR+W+V N
Sbjct: 271 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 313
Score = 28.5 bits (62), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 2 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 61
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 62 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVMSVDIDKKAS---- 114
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 115 ---------MIISGSRDKTIKVWTI 130
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 124 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
+V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 209
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 33/152 (21%), Positives = 65/152 (42%), Gaps = 28/152 (18%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 169 IISAGNDKMVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDA 237
K A S V SL T S++P+ V+ R + Y A
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRP----EFAGYSA 283
Query: 238 VS-----CLSLNAEQGLLYSGSWDKTLKVWRI 264
+ L+ +A+ L++G D ++VW++
Sbjct: 284 AAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVMSVDIDKKAS---- 120
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 121 ---------MIISGSRDKTIKVWTI 136
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 58.2 bits (139), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 78/180 (43%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S++
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKASMII 123
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 124 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
+V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 177 MVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIMLWNLAAKKAMYTLS 235
Score = 45.4 bits (106), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 101/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + ++ SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVMSVDIDKKASMIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 209
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 210 LIASAGKDGEIMLW 223
Score = 29.6 bits (65), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 169 IISAGNDKMVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIMLWNLAA 227
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNR--SVLKIRHY 235
K A S V SL T S++P+ V+ R K
Sbjct: 228 KKAMYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
AVS L+ +A+ L++G D ++VW++
Sbjct: 288 HAVS-LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ S D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVMTAN 319
Score = 28.5 bits (62), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVMSVDIDKKAS---- 120
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 121 ---------MIISGSRDKTIKVWTI 136
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 55.5 bits (132), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 49/180 (27%), Positives = 76/180 (42%), Gaps = 17/180 (9%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVF 292
H V +L A+ S SWDKTL++W ++ + + H + SV + S +
Sbjct: 64 HSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXII 123
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAV------NQESAVVYCGSSDG 346
+GS D T+KVW + Q CLA LL H + V+ + V + +S + +D
Sbjct: 124 SGSRDKTIKVWTIKGQ------CLA-TLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDK 176
Query: 347 LVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHSCLA 404
V W + + GH + L A+ G L+ S D I LW A L+
Sbjct: 177 XVKAWNLNQFQIEADFI-GHNSNINTLTASPDGTLIASAGKDGEIXLWNLAAKKAXYTLS 235
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 56/254 (22%)
Query: 115 LIGSIVRKEGHIYSLAASG---DLLYTGSDSKNIRVWK---NLKEFS----GFKSNSGLV 164
L G++ G + SLA S +LL + S K + WK + ++F FK +S +V
Sbjct: 9 LRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV 68
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVR 224
+ ++ D + D +R+W V+ T++ +V
Sbjct: 69 QDCTLTADGAYALSASWDKTLRLWDVATGE-----------TYQRFVG------------ 105
Query: 225 RNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV- 283
H V + ++ + + SGS DKT+KVW I +CL ++ H+D ++ V
Sbjct: 106 ---------HKSDVXSVDIDKKASXIISGSRDKTIKVWTIK-GQCLATLLGHNDWVSQVR 155
Query: 284 -----VAGFDSL-VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESA 337
A DS+ + + D VK W + + + H + + L + +
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLN------QFQIEADFIGHNSNINTLTASPDGT 209
Query: 338 VVYCGSSDGLVNFW 351
++ DG + W
Sbjct: 210 LIASAGKDGEIXLW 223
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 35/149 (23%), Positives = 65/149 (43%), Gaps = 22/149 (14%)
Query: 136 LYTGSDSKNIRVWKNLKEF---SGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSR 192
+ + + K ++ W NL +F + F ++ + + S D I + +DG+I +W ++
Sbjct: 169 IISAGNDKXVKAW-NLNQFQIEADFIGHNSNINTLTASPDGTLIASAGKDGEIXLWNLAA 227
Query: 193 KNA----SVHKRVGSL-----------PTFKDYVKSSVNPKNYVEVRRNR--SVLKIRHY 235
K A S V SL T S++P+ V+ R K
Sbjct: 228 KKAXYTLSAQDEVFSLAFSPNRYWLAAATATGIKVFSLDPQYLVDDLRPEFAGYSKAAEP 287
Query: 236 DAVSCLSLNAEQGLLYSGSWDKTLKVWRI 264
AVS L+ +A+ L++G D ++VW++
Sbjct: 288 HAVS-LAWSADGQTLFAGYTDNVIRVWQV 315
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 153 EFSGF-KSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKN 194
EF+G+ K+ ++ S D +F G+ D IR+W+V N
Sbjct: 277 EFAGYSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQVXTAN 319
Score = 28.9 bits (63), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 34/145 (23%), Positives = 53/145 (36%), Gaps = 23/145 (15%)
Query: 315 CLAQVLLKHENAVTALAVNQ-ESAVVYCGSSDGLVNFWECEKHLSHGGV----LRGHKMA 369
L L H VT+LA + + ++ S D + W+ GV +GH
Sbjct: 8 VLRGTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHI 67
Query: 370 V--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHE 427
V L A G S S D+ + LW + GH V + +++
Sbjct: 68 VQDCTLTADGAYALSASWDKTLRLW---DVATGETYQRFVGHKSDVXSVDIDKKAS---- 120
Query: 428 YHQKGDQRWTVYSGSLDKSVKVWRV 452
+ SGS DK++KVW +
Sbjct: 121 ---------XIISGSRDKTIKVWTI 136
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 55.1 bits (131), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 100/221 (45%), Gaps = 23/221 (10%)
Query: 242 SLNAEQGLLYSGSWDKTLKVWRI--SDCKCLESIN--AHDDAINSVVAG-FDSLVFTGSA 296
S + QG+L +GS D+ +K+ + D ++ ++ AH AI SV SL+ GS
Sbjct: 19 SFDFSQGILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSF 78
Query: 297 DGTVKVWRRELQGKGTKHC-LAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355
D TV +W +E T L ++ HEN V +A + + + S D V WE ++
Sbjct: 79 DSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWIWETDE 138
Query: 356 ---HLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHT 410
VL+ H V + + L+ S S D + +W+ + C+AVL GH
Sbjct: 139 SGEEYECISVLQEHSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDD-WECVAVLNGHE 197
Query: 411 GPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451
G V D D K + + + SGS D +V+VW+
Sbjct: 198 GTVWS------SDFD-----KTEGVFRLCSGSDDSTVRVWK 227
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 19/120 (15%)
Query: 250 LYSGSWDKTLKVWRI--------SDCKCLESI--NAHDDAINSVVAGFDSLVFTGSADGT 299
L SGS D T++VW+ + C E+I + H + +V GF+ L+ + ADG
Sbjct: 214 LCSGSDDSTVRVWKYMGDDEDDQQEWVC-EAILPDVHKRQVYNVAWGFNGLIASVGADGV 272
Query: 300 VKVWRRELQGKGTKHCLAQVLLKHE----NAVTALAVNQESAVVYCGSSDGLVNFWECEK 355
+ V+ + G A+ L H N V L +N ++ ++ G DG+VNFW EK
Sbjct: 273 LAVYE---EVDGEWKVFAKRALCHGVYEINVVKWLELNGKT-ILATGGDDGIVNFWSLEK 328
Score = 35.4 bits (80), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 36/146 (24%), Positives = 61/146 (41%), Gaps = 11/146 (7%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW-------RISDCKCLESINAHDDAINSVVAG 286
H A+ ++ LL +GS+D T+ +W R + L I H++ + V
Sbjct: 57 HKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAWS 116
Query: 287 FDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345
D T S D +V +W + G+ C++ VL +H V + + A++ S D
Sbjct: 117 NDGYYLATCSRDKSVWIWETDESGE-EYECIS-VLQEHSQDVKHVIWHPSEALLASSSYD 174
Query: 346 GLVNFW-ECEKHLSHGGVLRGHKMAV 370
V W + + VL GH+ V
Sbjct: 175 DTVRIWKDYDDDWECVAVLNGHEGTV 200
Score = 32.3 bits (72), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 43/96 (44%), Gaps = 19/96 (19%)
Query: 365 GHKMAVLCLAAA--GNLVFSGSADRNICLWRREESGAHS----CLAVLTGHTGPVKCLAV 418
HK A+ +A +L+ +GS D + +W +EES + LA++ GH VK +A
Sbjct: 56 AHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESADRTFEMDLLAIIEGHENEVKGVAW 115
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
D + + + S DKSV +W E
Sbjct: 116 SNDGYY-------------LATCSRDKSVWIWETDE 138
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 69/306 (22%)
Query: 94 KSPWIMP-PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK 152
+S W+M Y+P+ N ++ C GL IY+L + N+RV + L
Sbjct: 107 RSSWVMTCAYAPSGNYVA-CGGL-----DNICSIYNLK---------TREGNVRVSRELA 151
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
+G+ S + D N+I T D +W + +
Sbjct: 152 GHTGYLSCCRFL-------DDNQIVTSSGDTTCALWDIETGQQTTTFTG----------- 193
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
H V LSL + L SG+ D + K+W + + C ++
Sbjct: 194 ---------------------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 232
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVT 328
H+ IN++ + F TGS D T +++ + + H+N +T
Sbjct: 233 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-------SHDNIICGIT 285
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+++ ++ ++ G D N W+ K GVL GH V CL G V +GS D
Sbjct: 286 SVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 344
Query: 387 RNICLW 392
+ +W
Sbjct: 345 SFLKIW 350
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 70/308 (22%), Positives = 119/308 (38%), Gaps = 63/308 (20%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK--NYVEVRRNRSV 229
DS + + QDGK+ IW N +V ++P +V + NYV ++
Sbjct: 77 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 131
Query: 230 -----LKIR------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
LK R H +SC + ++ S S D T +W I + +
Sbjct: 132 CSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQTTT 190
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWR-RELQGKGTKHCLAQVLLKHENAVTAL 330
H + S+ D+ +F +G+ D + K+W RE + Q HE+ + A+
Sbjct: 191 FTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDINAI 243
Query: 331 AVNQESAVVYCGSSDGLVNFWE--CEKHL---SHGGVLRGHKMAVLCLAAAGNLVFSGSA 385
GS D ++ ++ L SH ++ G + + + +G L+ +G
Sbjct: 244 CFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAGYD 301
Query: 386 DRNICLW---RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGS 442
D N +W + + +G VL GH V CL V +D V +GS
Sbjct: 302 DFNCNVWDALKADRAG------VLAGHDNRVSCLGVTDD-------------GMAVATGS 342
Query: 443 LDKSVKVW 450
D +K+W
Sbjct: 343 WDSFLKIW 350
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 49.7 bits (117), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 69/306 (22%)
Query: 94 KSPWIMP-PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK 152
+S W+M Y+P+ N ++ C GL IY+L + N+RV + L
Sbjct: 96 RSSWVMTCAYAPSGNYVA-CGGL-----DNICSIYNLK---------TREGNVRVSRELA 140
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
+G+ S + D N+I T D +W + +
Sbjct: 141 GHTGYLSCCRFL-------DDNQIVTSSGDTTCALWDIETGQQTTTFTG----------- 182
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
H V LSL + L SG+ D + K+W + + C ++
Sbjct: 183 ---------------------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVT 328
H+ IN++ + F TGS D T +++ + + H+N +T
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-------SHDNIICGIT 274
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+++ ++ ++ G D N W+ K GVL GH V CL G V +GS D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 387 RNICLW 392
+ +W
Sbjct: 334 SFLKIW 339
Score = 45.8 bits (107), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 67/310 (21%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK--NYV-------- 221
DS + + QDGK+ IW N +V ++P +V + NYV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 222 -----------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
VR +R + H +SC + ++ S S D T +W I +
Sbjct: 121 CSIYNLKTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQT 177
Query: 271 ESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWR-RELQGKGTKHCLAQVLLKHENAVT 328
+ H + S+ D+ +F +G+ D + K+W RE + Q HE+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDIN 230
Query: 329 ALAVNQESAVVYCGSSDGLVNFWE--CEKHL---SHGGVLRGHKMAVLCLAAAGNLVFSG 383
A+ GS D ++ ++ L SH ++ G + + + +G L+ +G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAG 288
Query: 384 SADRNICLW---RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
D N +W + + +G VL GH V CL V +D V +
Sbjct: 289 YDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTDD-------------GMAVAT 329
Query: 441 GSLDKSVKVW 450
GS D +K+W
Sbjct: 330 GSWDSFLKIW 339
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 69/306 (22%)
Query: 94 KSPWIMP-PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK 152
+S W+M Y+P+ N ++ C GL IY+L + N+RV + L
Sbjct: 96 RSSWVMTCAYAPSGNYVA-CGGL-----DNICSIYNLK---------TREGNVRVSRELA 140
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
+G+ S + D N+I T D +W + +
Sbjct: 141 GHTGYLSCCRFL-------DDNQIVTSSGDTTCALWDIETGQQTTTFTG----------- 182
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
H V LSL + L SG+ D + K+W + + C ++
Sbjct: 183 ---------------------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVT 328
H+ IN++ + F TGS D T +++ + + H+N +T
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-------SHDNIICGIT 274
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+++ ++ ++ G D N W+ K GVL GH V CL G V +GS D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 387 RNICLW 392
+ +W
Sbjct: 334 SFLKIW 339
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 67/310 (21%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK--NYV-------- 221
DS + + QDGK+ IW N +V ++P +V + NYV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 222 -----------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
VR +R + H +SC + ++ S S D T +W I +
Sbjct: 121 CSIYNLKTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQT 177
Query: 271 ESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWR-RELQGKGTKHCLAQVLLKHENAVT 328
+ H + S+ D+ +F +G+ D + K+W RE + Q HE+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDIN 230
Query: 329 ALAVNQESAVVYCGSSDGLVNFWE--CEKHL---SHGGVLRGHKMAVLCLAAAGNLVFSG 383
A+ GS D ++ ++ L SH ++ G + + + +G L+ +G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAG 288
Query: 384 SADRNICLW---RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
D N +W + + +G VL GH V CL V +D V +
Sbjct: 289 YDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTDD-------------GMAVAT 329
Query: 441 GSLDKSVKVW 450
GS D +K+W
Sbjct: 330 GSWDSFLKIW 339
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 69/306 (22%)
Query: 94 KSPWIMP-PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK 152
+S W+M Y+P+ N ++ C GL IY+L + N+RV + L
Sbjct: 96 RSSWVMTCAYAPSGNYVA-CGGL-----DNICSIYNLK---------TREGNVRVSRELA 140
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
+G+ S + D N+I T D +W + +
Sbjct: 141 GHTGYLSCCRFL-------DDNQIVTSSGDTTCALWDIETGQQTTTFTG----------- 182
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
H V LSL + L SG+ D + K+W + + C ++
Sbjct: 183 ---------------------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVT 328
H+ IN++ + F TGS D T +++ + + H+N +T
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-------SHDNIICGIT 274
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+++ ++ ++ G D N W+ K GVL GH V CL G V +GS D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 387 RNICLW 392
+ +W
Sbjct: 334 SFLKIW 339
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 67/310 (21%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK--NYV-------- 221
DS + + QDGK+ IW N +V ++P +V + NYV
Sbjct: 66 DSRLLLSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 222 -----------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
VR +R + H +SC + ++ S S D T +W I +
Sbjct: 121 CSIYNLKTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQT 177
Query: 271 ESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWR-RELQGKGTKHCLAQVLLKHENAVT 328
+ H + S+ D+ +F +G+ D + K+W RE + Q HE+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDIN 230
Query: 329 ALAVNQESAVVYCGSSDGLVNFWE--CEKHL---SHGGVLRGHKMAVLCLAAAGNLVFSG 383
A+ GS D ++ ++ L SH ++ G + + + +G L+ +G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAG 288
Query: 384 SADRNICLW---RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
D N +W + + +G VL GH V CL V +D V +
Sbjct: 289 YDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTDD-------------GMAVAT 329
Query: 441 GSLDKSVKVW 450
GS D +K+W
Sbjct: 330 GSWDSFLKIW 339
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 49.3 bits (116), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 67/306 (21%), Positives = 114/306 (37%), Gaps = 69/306 (22%)
Query: 94 KSPWIMP-PYSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKNLK 152
+S W+M Y+P+ N ++ C GL IY+L + N+RV + L
Sbjct: 96 RSSWVMTCAYAPSGNYVA-CGGL-----DNICSIYNLK---------TREGNVRVSRELA 140
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVK 212
+G+ S + D N+I T D +W + +
Sbjct: 141 GHTGYLSCCRFL-------DDNQIVTSSGDTTCALWDIETGQQTTTFTG----------- 182
Query: 213 SSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLES 272
H V LSL + L SG+ D + K+W + + C ++
Sbjct: 183 ---------------------HTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQT 221
Query: 273 INAHDDAINSVVAGFDSLVF-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHEN---AVT 328
H+ IN++ + F TGS D T +++ + + H+N +T
Sbjct: 222 FTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTY-------SHDNIICGIT 274
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSAD 386
+++ ++ ++ G D N W+ K GVL GH V CL G V +GS D
Sbjct: 275 SVSFSKSGRLLLAGYDDFNCNVWDALKA-DRAGVLAGHDNRVSCLGVTDDGMAVATGSWD 333
Query: 387 RNICLW 392
+ +W
Sbjct: 334 SFLKIW 339
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 70/310 (22%), Positives = 119/310 (38%), Gaps = 67/310 (21%)
Query: 172 DSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPK--NYV-------- 221
DS + + QDGK+ IW N +V ++P +V + NYV
Sbjct: 66 DSRLLVSASQDGKLIIWDSYTTN-----KVHAIPLRSSWVMTCAYAPSGNYVACGGLDNI 120
Query: 222 -----------EVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCL 270
VR +R + H +SC + ++ S S D T +W I +
Sbjct: 121 CSIYNLKTREGNVRVSRELAG--HTGYLSCCRFLDDNQIVTS-SGDTTCALWDIETGQQT 177
Query: 271 ESINAHDDAINSVVAGFDSLVF-TGSADGTVKVWR-RELQGKGTKHCLAQVLLKHENAVT 328
+ H + S+ D+ +F +G+ D + K+W RE + Q HE+ +
Sbjct: 178 TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCR-------QTFTGHESDIN 230
Query: 329 ALAVNQESAVVYCGSSDGLVNFWE--CEKHL---SHGGVLRGHKMAVLCLAAAGNLVFSG 383
A+ GS D ++ ++ L SH ++ G + + + +G L+ +G
Sbjct: 231 AICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDNIICG--ITSVSFSKSGRLLLAG 288
Query: 384 SADRNICLW---RREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYS 440
D N +W + + +G VL GH V CL V +D V +
Sbjct: 289 YDDFNCNVWDALKADRAG------VLAGHDNRVSCLGVTDD-------------GMAVAT 329
Query: 441 GSLDKSVKVW 450
GS D +K+W
Sbjct: 330 GSWDSFLKIW 339
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 61/130 (46%), Gaps = 11/130 (8%)
Query: 273 INAHDDAINSVVAGFDS-------LVFTGSADGTVKVWR-RELQGKGTKHCLAQVLLKHE 324
+ H D + S+VAGF ++ +GS D TV +W+ E + G + L H
Sbjct: 17 LEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHN 76
Query: 325 NAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAAGN--LVFS 382
+ V+ LA++QE+ S D + W+ ++ + GH+ V +A + + + S
Sbjct: 77 HFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFV-GHQSEVYSVAFSPDNRQILS 135
Query: 383 GSADRNICLW 392
A+R I LW
Sbjct: 136 AGAEREIKLW 145
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/173 (21%), Positives = 65/173 (37%), Gaps = 21/173 (12%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVF 292
H VS L+L+ E S SWDKTL++W + + H + SV D+ +
Sbjct: 75 HNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQIL 134
Query: 293 TGSADGTVKVW-----------RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC 341
+ A+ +K+W +E ++K N V A S
Sbjct: 135 SAGAEREIKLWNILGECKFSSAEKENHSDWVSCVRYSPIMKSANKVQPFAPYFASV---- 190
Query: 342 GSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLW 392
DG + W + + + H+ V L ++ G + +G D+ + +W
Sbjct: 191 -GWDGRLKVWNTNFQIRY--TFKAHESNVNHLSISPNGKYIATGGKDKKLLIW 240
Score = 30.0 bits (66), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 42/102 (41%), Gaps = 25/102 (24%)
Query: 361 GVLRGHKMAVLCLAAAGN--------LVFSGSADRNICLWRREESGAHSCLAV----LTG 408
G+L GH V + A + ++ SGS D+ + +W+ E + + LTG
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTG 74
Query: 409 HTGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVW 450
H V LA+ ++ S S DK++++W
Sbjct: 75 HNHFVSDLALSQENCF-------------AISSSWDKTLRLW 103
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/193 (22%), Positives = 84/193 (43%), Gaps = 41/193 (21%)
Query: 121 RKEGHI-----YSLAASGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKAIIISGDS 173
R EGH +L+ +G+ + S ++R+W +N + F ++ V ++ S D+
Sbjct: 62 RLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDN 121
Query: 174 NKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233
+I +G +D +R+W V K +H ++ +
Sbjct: 122 RQIVSGGRDNALRVWNV--KGECMH-----------------------------TLSRGA 150
Query: 234 HYDAVSCL--SLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFD-SL 290
H D VSC+ S + + ++ SG WD +KVW ++ + + + H + + SV D SL
Sbjct: 151 HTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGSL 210
Query: 291 VFTGSADGTVKVW 303
+ DG ++W
Sbjct: 211 CASSDKDGVARLW 223
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 95/231 (41%), Gaps = 28/231 (12%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI-SDCKCLESINAHDDAINSV--VAGFDS- 289
H V ++ + + + SG D L+VW + +C S AH D ++ V D+
Sbjct: 108 HTKDVLSVAFSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAP 167
Query: 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVN 349
++ +G D VKVW G+ L L H N VT++ V+ + ++ DG+
Sbjct: 168 VIVSGGWDNLVKVWDLA-TGR-----LVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVAR 221
Query: 350 FWECEKHLSHGGVLRGHKMAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGH 409
W+ K + + G + +C + + ++ I ++ E LA H
Sbjct: 222 LWDLTKGEALSEMAAGAPINQICFSP-NRYWMCAATEKGIRIFDLENKDIIVELA--PEH 278
Query: 410 TGPVK----CLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEHA 456
G K C+++ D T+YSG D ++VW VSE+A
Sbjct: 279 QGSKKIVPECVSIAWSADGS-----------TLYSGYTDNVIRVWGVSENA 318
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
A + + GS D ++V+ + + + AH D I S+ V V +GS D TVK+W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGV 362
E L Q HE+ V +A N + + G D V W + + +
Sbjct: 125 NWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 363 LRGHKMAVLCL----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418
G + V + + + S D I +W + SC+A L GH V AV
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVS-FAV 235
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
+H + SGS D ++K+W S +
Sbjct: 236 ---------FHPTLP---IIISGSEDGTLKIWNSSTY 260
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 18/193 (9%)
Query: 129 LAASGDLLYTGSDSKNIRV--WKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
A + + GSD IRV + ++ F+++ +++I + + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE--VRRNRSVLKIRHYDAVSCLSLN 244
+W A G + +P + + R V + L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 245 AEQGLLY-------------SGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDSL 290
E+G+ Y + S D T+K+W C+ ++ H ++ +V +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 291 VFTGSADGTVKVW 303
+ +GS DGT+K+W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439
V SGS D + LW E + A GH V C+A ++ K T
Sbjct: 112 VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVA----------FNPKDPS--TFA 157
Query: 440 SGSLDKSVKVWRVSEHAPDL 459
SG LD++VKVW + + P+
Sbjct: 158 SGCLDRTVKVWSLGQSTPNF 177
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 101/271 (37%), Gaps = 33/271 (12%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRSVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCL 316
W + LE + H+ + V F+ S +G D TVKVW L L
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTL 179
Query: 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCLA 374
+ N V + + ++ S D + W+ + S L GH ++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFH 237
Query: 375 AAGNLVFSGSADRNICLWRREESGAHSCLAV 405
++ SGS D + +W L V
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
A + + GS D ++V+ + + + AH D I S+ V V +GS D TVK+W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGV 362
E L Q HE+ V +A N + + G D V W + + +
Sbjct: 125 NWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 363 LRGHKMAVLCL----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418
G + V + + + S D I +W + SC+A L GH V AV
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNVS-FAV 235
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
+H + SGS D ++K+W S +
Sbjct: 236 ---------FHPTLP---IIISGSEDGTLKIWNSSTY 260
Score = 35.0 bits (79), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 18/193 (9%)
Query: 129 LAASGDLLYTGSDSKNIRV--WKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
A + + GSD IRV + ++ F+++ +++I + + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE--VRRNRSVLKIRHYDAVSCLSLN 244
+W A G + +P + + R V + L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 245 AEQGLLY-------------SGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDSL 290
E+G+ Y + S D T+K+W C+ ++ H ++ +V +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 291 VFTGSADGTVKVW 303
+ +GS DGT+K+W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439
V SGS D + LW E + A GH V C+A ++ K T
Sbjct: 112 VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVA----------FNPKDPS--TFA 157
Query: 440 SGSLDKSVKVWRVSEHAPDL 459
SG LD++VKVW + + P+
Sbjct: 158 SGCLDRTVKVWSLGQSTPNF 177
Score = 33.1 bits (74), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 101/271 (37%), Gaps = 33/271 (12%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRSVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCL 316
W + LE + H+ + V F+ S +G D TVKVW L L
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTL 179
Query: 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCLA 374
+ N V + + ++ S D + W+ + S L GH ++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFH 237
Query: 375 AAGNLVFSGSADRNICLWRREESGAHSCLAV 405
++ SGS D + +W L V
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 44.3 bits (103), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/206 (23%), Positives = 92/206 (44%), Gaps = 13/206 (6%)
Query: 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH---DDA 279
V + S+ + H +V L+ + + + S S DKT+K+W ++ K ++I +D
Sbjct: 227 VFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQ 286
Query: 280 INSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVV 339
++ +LV + SA+G + EL + QV H A+TAL+ + + +
Sbjct: 287 QLGIIWTKQALV-SISANGFINFVNPELG------SIDQVRYGHNKAITALSSSADGKTL 339
Query: 340 YCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCL--AAAGNLVFSGSADRNICLWRREES 397
+ ++G +N W+ +S+ H + + + G+L F+ S D ++ + S
Sbjct: 340 FSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKGDL-FTVSWDDHLKVVPAGGS 398
Query: 398 GAHSCLAVLTGHTGPVKCLAVEEDRD 423
G S AV + LAV D D
Sbjct: 399 GVDSSKAVANKLSSQPLGLAVSADGD 424
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 97/419 (23%), Positives = 155/419 (36%), Gaps = 92/419 (21%)
Query: 102 YSPNENLLSSCNGLIGSIVRKEGHIYSLAASGDLLYTGSDSKNIRVWKN--LKEFSGFKS 159
Y+P+ +L +S G +G I +LY G D V+++ LK +
Sbjct: 198 YNPDGSLFASTGG--------DGTI--------VLYNGVDGTKTGVFEDDSLKNVA---- 237
Query: 160 NSGLVKAIIISGDSNKIFTGHQDGKIRIWKVS----RKNASVHKRV-----GSLPTFKDY 210
+SG V + S D KI + D I+IW V+ K V R+ G + T +
Sbjct: 238 HSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQAL 297
Query: 211 VKSSVNP-KNYVEVRRNRSVLKIR--HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDC 267
V S N N+V S+ ++R H A++ LS +A+ L+S + + W IS
Sbjct: 298 VSISANGFINFVNPELG-SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTG 356
Query: 268 KCLESI-NAHDDAINSVVAGFDSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENA 326
+ H I + +FT S D +KV G + +A L
Sbjct: 357 ISNRVFPDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQP-- 414
Query: 327 VTALAVNQESAVVYCGSSDGLVNFWECEKHL---SHGGVLR---GHKMAVLCLAAAGNLV 380
LAV S+DG + C KH+ SHG + + + + L+ V
Sbjct: 415 -LGLAV----------SADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFV 463
Query: 381 FSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLA--------VEEDRDHD------- 425
G D + +++ SGA H + +A V D+
Sbjct: 464 AVGGQDSKVHVYKL--SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVA 521
Query: 426 HEYHQKGDQRWTVY-----------------SGSLDKSVKVWRV---SEHAPDLKGLHS 464
+ + WT + +GSLD SV VW + S+H +KG H+
Sbjct: 522 NNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHA 580
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 35/155 (22%), Positives = 64/155 (41%), Gaps = 19/155 (12%)
Query: 167 IIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRN 226
+ +S D + G QD K+ ++K+S + S K + P V S N V ++
Sbjct: 454 VALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTI-VHPAEITSVAFSNNGAFLVATDQS 512
Query: 227 RSVLKIR---------------HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRI---SDCK 268
R V+ H V+C+S + + L +GS D ++ VW + SD
Sbjct: 513 RKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDHP 572
Query: 269 CLESINAHDDAINSVVAGFDSLVFTGSADGTVKVW 303
+ ++NSV+ ++ + + D +K W
Sbjct: 573 IIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFW 607
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 85/217 (39%), Gaps = 27/217 (12%)
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
A + + GS D ++V+ + + + AH D I S+ V V +GS D TVK+W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 304 RRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGV 362
E L Q HE+ V +A N + + G D V W + + +
Sbjct: 125 NWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 363 LRGHKMAVLCL----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418
G + V + + + S D I +W + SC+A L GH V AV
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNV-SFAV 235
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
+H + SGS D ++K+W S +
Sbjct: 236 ---------FHPTLP---IIISGSEDGTLKIWNSSTY 260
Score = 33.9 bits (76), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439
V SGS D + LW E + A GH V C+A ++ K T
Sbjct: 112 VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVA----------FNPKDPS--TFA 157
Query: 440 SGSLDKSVKVWRVSEHAPDL 459
SG LD++VKVW + + P+
Sbjct: 158 SGCLDRTVKVWSLGQSTPNF 177
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 36/193 (18%), Positives = 75/193 (38%), Gaps = 18/193 (9%)
Query: 129 LAASGDLLYTGSDSKNIRV--WKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
A + + GSD IRV + ++ F+++ +++I + + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE--VRRNRSVLKIRHYDAVSCLSLN 244
+W A G + +P + + R V + L+
Sbjct: 123 LWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTLTTG 182
Query: 245 AEQGLLY-------------SGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGFDSL 290
E+G+ Y + S D T+K+W C+ ++ H ++ +V +
Sbjct: 183 QERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPI 242
Query: 291 VFTGSADGTVKVW 303
+ +GS DGT+K+W
Sbjct: 243 IISGSEDGTLKIW 255
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 55/271 (20%), Positives = 101/271 (37%), Gaps = 33/271 (12%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ +W N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVELW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRSVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCL 316
W + LE + H+ + V F+ S +G D TVKVW L L
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTL 179
Query: 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCLA 374
+ N V + + ++ S D + W+ + S L GH ++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFH 237
Query: 375 AAGNLVFSGSADRNICLWRREESGAHSCLAV 405
++ SGS D + +W L V
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 222 EVRRNRSVL-----KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276
E+ S+L K H D V LS+ ++ SG D ++KVW +S L+S NAH
Sbjct: 121 EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAH 180
Query: 277 DDAINSVVA--GFDSLVFTGSADGTVKVW 303
+N V A G D++ + DG + +W
Sbjct: 181 SSEVNCVAACPGKDTIFLSCGEDGRILLW 209
Score = 33.1 bits (74), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 54/109 (49%), Gaps = 18/109 (16%)
Query: 95 SPWIM--PPYSPNENLLSSCNGLIGSIVRKEGHIYSLA-ASGDLLYTGSDSKNIRVWKNL 151
S W+ P +PNE+L ++ V+ E + +A S + SDS + +W+ L
Sbjct: 71 SIWVFKDPEGAPNESLCTAG-------VQTEAGVTDVAWVSEKGILVASDSGAVELWEIL 123
Query: 152 KE-------FSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRK 193
++ F+ ++ + +VK + + D + +G +D +++W +S+K
Sbjct: 124 EKESLLVNKFAKYEHDD-IVKTLSVFSDGTQAVSGGKDFSVKVWDLSQK 171
Score = 28.9 bits (63), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 28/108 (25%), Positives = 42/108 (38%), Gaps = 12/108 (11%)
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ S G V++W E+ K + +H++ V L+V + G D V
Sbjct: 108 ILVASDSGAVELW--EILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKV 165
Query: 351 WECEKHLSHGGVLR---GHKMAVLCLAAA---GNLVFSGSADRNICLW 392
W+ LS VL+ H V C+AA + S D I LW
Sbjct: 166 WD----LSQKAVLKSYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length Murine
Apaf-1
Length = 1256
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 30/297 (10%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLV--KAIIISGDSNKIFTGHQD 182
H + G T SD + IRVW+ K NS +V + I + N+ D
Sbjct: 893 HGVMFSPDGSSFLTASDDQTIRVWETKK----VCKNSAIVLKQEIDVVFQENETMVLAVD 948
Query: 183 GKIRIWKVSRKNASV------HKRVGSLPTFKDYVK--SSVNPKNYVEVRRNRSVLK-IR 233
+ ++ K + L +YV +E+ NR +
Sbjct: 949 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1008
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDSLV 291
H AV + A+ L S S D ++VW + D L+ AH + + DS +
Sbjct: 1009 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRL 1065
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
+ S DGTVKVW + G+ + + H+ V + A++ ++ S+D W
Sbjct: 1066 LSWSFDGTVKVWNV-ITGR-----IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1119
Query: 352 ECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESG-AHSCLAV 405
+ LS L+GH V C A + G L+ +G + I +W + HSC +
Sbjct: 1120 SFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1175
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 225 RNRSVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+N S L +R H DAV +C S + ++ + S DKTL+V++ + L I AH+D +
Sbjct: 611 KNLSRLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV- 667
Query: 282 SVVAGF---DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-- 336
+ F DS + T SAD VK+W GK L +H V +S
Sbjct: 668 -LCCAFSSDDSYIATCSADKKVKIWDSA-TGK-----LVHTYDEHSEQVNCCHFTNKSNH 720
Query: 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLW 392
++ GS+D + W+ + + GH +V + L+ S SAD + LW
Sbjct: 721 LLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 777
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---L 290
H D V C + +++ + + S DK +K+W + K + + + H + +N S L
Sbjct: 663 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 722
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ TGS D +K+W +L K ++ + H N+V + + ++ S+DG +
Sbjct: 723 LATGSNDFFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Query: 351 WE 352
W+
Sbjct: 777 WD 778
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 113 NGLIGSIVRK----EGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLV 164
N + G I R +G + S A S D S S K ++W L K ++G V
Sbjct: 1078 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1137
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVS 191
+ S D + TG +G+IRIW VS
Sbjct: 1138 RCSAFSLDGILLATGDDNGEIRIWNVS 1164
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 70/297 (23%), Positives = 115/297 (38%), Gaps = 30/297 (10%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLV--KAIIISGDSNKIFTGHQD 182
H + G T SD + IRVW+ K NS +V + I + N+ D
Sbjct: 886 HGVMFSPDGSSFLTASDDQTIRVWETKK----VCKNSAIVLKQEIDVVFQENETMVLAVD 941
Query: 183 GKIRIWKVSRKNASV------HKRVGSLPTFKDYVK--SSVNPKNYVEVRRNRSVLK-IR 233
+ ++ K + L +YV +E+ NR +
Sbjct: 942 NIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVG 1001
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVW--RISDCKCLESINAHDDAINSVVAGFDSLV 291
H AV + A+ L S S D ++VW + D L+ AH + + DS +
Sbjct: 1002 HKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDYVFLQ---AHQETVKDFRLLQDSRL 1058
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
+ S DGTVKVW + G+ + + H+ V + A++ ++ S+D W
Sbjct: 1059 LSWSFDGTVKVWNV-ITGR-----IERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIW 1112
Query: 352 ECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWRREESG-AHSCLAV 405
+ LS L+GH V C A + G L+ +G + I +W + HSC +
Sbjct: 1113 SFDL-LSPLHELKGHNGCVRCSAFSLDGILLATGDDNGEIRIWNVSDGQLLHSCAPI 1168
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 51/178 (28%), Positives = 80/178 (44%), Gaps = 21/178 (11%)
Query: 225 RNRSVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAIN 281
+N S L +R H DAV +C S + ++ + S DKTL+V++ + L I AH+D +
Sbjct: 604 KNLSRLVVRPHTDAVYHACFSQDGQR--IASCGADKTLQVFKAETGEKLLDIKAHEDEV- 660
Query: 282 SVVAGF---DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQES-- 336
+ F DS + T SAD VK+W GK L +H V +S
Sbjct: 661 -LCCAFSSDDSYIATCSADKKVKIWDSA-TGK-----LVHTYDEHSEQVNCCHFTNKSNH 713
Query: 337 AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGSADRNICLW 392
++ GS+D + W+ + + GH +V + L+ S SAD + LW
Sbjct: 714 LLLATGSNDFFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDELLASCSADGTLRLW 770
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/122 (23%), Positives = 58/122 (47%), Gaps = 9/122 (7%)
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS---L 290
H D V C + +++ + + S DK +K+W + K + + + H + +N S L
Sbjct: 656 HEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLL 715
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ TGS D +K+W +L K ++ + H N+V + + ++ S+DG +
Sbjct: 716 LATGSNDFFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Query: 351 WE 352
W+
Sbjct: 770 WD 771
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 39/87 (44%), Gaps = 8/87 (9%)
Query: 113 NGLIGSIVRK----EGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLV 164
N + G I R +G + S A S D S S K ++W L K ++G V
Sbjct: 1071 NVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCV 1130
Query: 165 KAIIISGDSNKIFTGHQDGKIRIWKVS 191
+ S D + TG +G+IRIW VS
Sbjct: 1131 RCSAFSLDGILLATGDDNGEIRIWNVS 1157
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 42.4 bits (98), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/157 (22%), Positives = 61/157 (38%), Gaps = 24/157 (15%)
Query: 133 GDLLYTGSDSKNIRVWK---NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIW- 188
++ +GS +R+W + + + G + ++ D + TG DG R++
Sbjct: 218 ANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD 277
Query: 189 -----KVSRKNASVHKRVGSLPTFKDYVKS---------SVNPKNYV------EVRRNRS 228
++ N + LP S N YV E+ N
Sbjct: 278 MRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLG 337
Query: 229 VLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS 265
L+ H +SCL L+++ L +GSWDK LK+W S
Sbjct: 338 TLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 66/346 (19%), Positives = 133/346 (38%), Gaps = 78/346 (22%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWK--VSRKNASVH------KRVGSLPTFK 208
+ +SG V ++ + + N I + QDG++ +W S+K ++ P +
Sbjct: 62 LQGHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVMECAFAPNGQ 121
Query: 209 -------DYVKSSVNPKNYVEVRRNRSVLKI----RHYDAVSCLSLNAEQGLLYSGSWDK 257
D S N + + N V ++ + Y A SC + ++ L +GS D+
Sbjct: 122 SVACGGLDSACSIFNLSSQADRDGNMPVSRVLTGHKGY-ASSCQYVPDQETRLITGSGDQ 180
Query: 258 TLKVWRISDCKCLE----------SINAHDDAINSVVAGFDSLVFTGSADGTVKVWRREL 307
T +W ++ + + + + +INS+ A ++ +GS D TV++W +
Sbjct: 181 TCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNA---NMFISGSCDTTVRLWDLRI 237
Query: 308 QGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHK 367
+ + HE + ++ + GS DG ++ + GH+
Sbjct: 238 TSRAVR-----TYHGHEGDINSVKFFPDGQRFGTGSDDGTCRLFD---------MRTGHQ 283
Query: 368 MAV-----------------LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVL-TGH 409
+ V + + +G L+F+G ++ + +W + L L H
Sbjct: 284 LQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLLAEMVLNLGTLQNSH 343
Query: 410 TGPVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
G + CL + D + +GS DK++K+W S H
Sbjct: 344 EGRISCLGLSSDGS-------------ALCTGSWDKNLKIWAFSGH 376
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 54/217 (24%), Positives = 86/217 (39%), Gaps = 27/217 (12%)
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSV-VAGFDSLVFTGSADGTVKVW 303
A + + GS D ++V+ + + + AH D I S+ V V +GS D TVK+W
Sbjct: 65 ARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLW 124
Query: 304 RRELQGKGTKHCLAQVLLKHENAVTALAVN-QESAVVYCGSSDGLVNFWECEKHLSHGGV 362
E L Q HE+ V +A N ++ + G D V W + + +
Sbjct: 125 NWE-----NNWALEQTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 363 LRGHKMAVLCL----AAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAV 418
G + V + + + S D I +W + SC+A L GH V AV
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQ---TKSCVATLEGHMSNV-SFAV 235
Query: 419 EEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSEH 455
+H + SGS D ++K+W S +
Sbjct: 236 ---------FHPTLP---IIISGSEDGTLKIWNSSTY 260
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 14/80 (17%)
Query: 380 VFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRWTVY 439
V SGS D + LW E + A GH V C+A ++ K T
Sbjct: 112 VLSGSDDLTVKLWNWENNWALE--QTFEGHEHFVMCVA----------FNPKDPS--TFA 157
Query: 440 SGSLDKSVKVWRVSEHAPDL 459
SG LD++VKVW + + P+
Sbjct: 158 SGCLDRTVKVWSLGQSTPNF 177
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 39/196 (19%), Positives = 80/196 (40%), Gaps = 24/196 (12%)
Query: 129 LAASGDLLYTGSDSKNIRV--WKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIR 186
A + + GSD IRV + ++ F+++ +++I + + +G D ++
Sbjct: 63 FIARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVK 122
Query: 187 IWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVE-----VRRNRSVLKIRHYDAVSCL 241
+W N ++ + F V + NPK+ + R V + L
Sbjct: 123 LWN-WENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVWSLGQSTPNFTL 179
Query: 242 SLNAEQGLLY-------------SGSWDKTLKVWRISDCKCLESINAHDDAIN-SVVAGF 287
+ E+G+ Y + S D T+K+W C+ ++ H ++ +V
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT 239
Query: 288 DSLVFTGSADGTVKVW 303
++ +GS DGT+K+W
Sbjct: 240 LPIIISGSEDGTLKIW 255
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 56/271 (20%), Positives = 101/271 (37%), Gaps = 33/271 (12%)
Query: 157 FKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSS-- 214
F + S VK I + T G++ IW N V S+ + V++
Sbjct: 9 FSNRSDRVKGIDFHPTEPWVLTTLYSGRVEIW-----NYETQVEVRSIQVTETPVRAGKF 63
Query: 215 VNPKNYVEVRRNRSVLKIRHY-------------DAVSCLSLNAEQGLLYSGSWDKTLKV 261
+ KN++ V + +++ +Y D + ++++ + + SGS D T+K+
Sbjct: 64 IARKNWIIVGSDDFRIRVFNYNTGEKVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKL 123
Query: 262 WRISDCKCLE-SINAHDDAINSVVAGFD----SLVFTGSADGTVKVWRRELQGKGTKHCL 316
W + LE + H+ + V F+ S +G D TVKVW L L
Sbjct: 124 WNWENNWALEQTFEGHEHFVMCV--AFNPKDPSTFASGCLDRTVKVW--SLGQSTPNFTL 179
Query: 317 AQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGH--KMAVLCLA 374
+ N V + + ++ S D + W+ + S L GH ++
Sbjct: 180 TTGQERGVNYVDYYPLPDKPYMI-TASDDLTIKIWDYQTK-SCVATLEGHMSNVSFAVFH 237
Query: 375 AAGNLVFSGSADRNICLWRREESGAHSCLAV 405
++ SGS D + +W L V
Sbjct: 238 PTLPIIISGSEDGTLKIWNSSTYKVEKTLNV 268
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 60/140 (42%), Gaps = 6/140 (4%)
Query: 232 IRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
I H+ +S L N LL S S D TL++W + H +I S D V
Sbjct: 244 IGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVSASWVGDDKV 303
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
+ S DG+V++W + ++ L + + + A ++Q+ DG VN +
Sbjct: 304 ISCSMDGSVRLWSLK------QNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVY 357
Query: 352 ECEKHLSHGGVLRGHKMAVL 371
+ +K S L G++ +L
Sbjct: 358 DLKKLNSKSRSLYGNRDGIL 377
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 89/213 (41%), Gaps = 47/213 (22%)
Query: 132 SGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDS------------NKIFTG 179
+G LL + + IR+W G + +S + K+++ G N + +
Sbjct: 27 AGTLLASCGGDRRIRIW-------GTEGDSWICKSVLSEGHQRTVRKVAWSPCGNYLASA 79
Query: 180 HQDGKIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKN---YVEVRRNRSVL--KIRH 234
D IWK KN + V +L ++ VKS + R++SV ++
Sbjct: 80 SFDATTCIWK---KNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 235 YDAVSCLSL-------------NAEQGLLYSGSWDKTLKVWRIS--DCKCLESINAHDDA 279
D C+S+ + Q LL S S+D T+K++R D C ++ H+
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHEST 196
Query: 280 INSVVAGFD---SLVFTGSADGTVKVWRRELQG 309
+ S+ FD + + S D TV++WR+ L G
Sbjct: 197 VWSL--AFDPSGQRLASCSDDRTVRIWRQYLPG 227
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 56/220 (25%), Positives = 90/220 (40%), Gaps = 28/220 (12%)
Query: 241 LSLNAEQGLLYSGSWDKTLKVWRISD----CKCLESINAHDDAINSVV-AGFDSLVFTGS 295
L+ N LL S D+ +++W CK + S H + V + + + + S
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTEGDSWICKSVLS-EGHQRTVRKVAWSPCGNYLASAS 80
Query: 296 ADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEK 355
D T +W++ + C+ L HEN V ++A ++ S D V WE ++
Sbjct: 81 FDATTCIWKK---NQDDFECVT-TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDE 136
Query: 356 HLSHG--GVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTG 411
+ VL H V + + L+ S S D + L+R EE C A L GH
Sbjct: 137 EDEYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDD-WVCCATLEGHES 195
Query: 412 PVKCLAVEEDRDHDHEYHQKGDQRWTVYSGSLDKSVKVWR 451
V LA + QR + S S D++V++WR
Sbjct: 196 TVWSLAFD-----------PSGQR--LASCSDDRTVRIWR 222
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/128 (23%), Positives = 62/128 (48%), Gaps = 10/128 (7%)
Query: 229 VLKIR-HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGF 287
+L+I+ H D V C + + + + + S DK +K+W + + + + H + +N
Sbjct: 656 LLEIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTN 715
Query: 288 DS---LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSS 344
S L+ TGS+D +K+W +L K ++ + H N+V + + ++ S+
Sbjct: 716 SSHHLLLATGSSDCFLKLW--DLNQKECRN----TMFGHTNSVNHCRFSPDDKLLASCSA 769
Query: 345 DGLVNFWE 352
DG + W+
Sbjct: 770 DGTLKLWD 777
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 81/188 (43%), Gaps = 25/188 (13%)
Query: 215 VNPKNYVEVRRNRSVLKIR-HYDAV--SCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLE 271
+N KN + R L +R H DAV +C S + ++ + S DKTL+V++ + L
Sbjct: 604 INKKNITNLSR----LVVRPHTDAVYHACFSEDGQR--IASCGADKTLQVFKAETGEKLL 657
Query: 272 SINAHDDAINSVVAGF---DSLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328
I AH+D + + F D + T S D VK+W + G+ L +H V
Sbjct: 658 EIKAHEDEV--LCCAFSTDDRFIATCSVDKKVKIW-NSMTGE-----LVHTYDEHSEQVN 709
Query: 329 ALAVNQES--AVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--LCLAAAGNLVFSGS 384
S ++ GSSD + W+ + + GH +V + L+ S S
Sbjct: 710 CCHFTNSSHHLLLATGSSDCFLKLWDLNQKECRNTMF-GHTNSVNHCRFSPDDKLLASCS 768
Query: 385 ADRNICLW 392
AD + LW
Sbjct: 769 ADGTLKLW 776
Score = 37.0 bits (84), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 56/272 (20%), Positives = 99/272 (36%), Gaps = 55/272 (20%)
Query: 164 VKAIIISGDSNKIFTGHQDGKIRIWKVSR--KNASVHKRVGSLPTFK------------- 208
V ++ S D + T D IR+W+ + KN++V + F+
Sbjct: 891 VHGVMFSPDGSSFLTSSDDQTIRLWETKKVCKNSAVMLKQEVDVVFQENEVMVLAVDHIR 950
Query: 209 ------------DYVKSS------VNPK-------------NYVEVRRNRSVL-KIRHYD 236
DY+ + ++P +E+ NR + +H
Sbjct: 951 RLQLINGRTGQIDYLTEAQVSCCCLSPHLQYIAFGDENGAIEILELVNNRIFQSRFQHKK 1010
Query: 237 AVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSA 296
V + A++ L S S D ++VW KC+ + H + + +S + + S
Sbjct: 1011 TVWHIQFTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDFRLLKNSRLLSWSF 1069
Query: 297 DGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKH 356
DGTVKVW + G K + H+ V + ++ ++ S+D W +
Sbjct: 1070 DGTVKVWNI-ITGNKEKD-----FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLL 1123
Query: 357 LSHGGVLRGHKMAVLCLAAAGNLVFSGSADRN 388
L LRGH V C A + + + D N
Sbjct: 1124 LPLHE-LRGHNGCVRCSAFSVDSTLLATGDDN 1154
Score = 31.6 bits (70), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 35/77 (45%), Gaps = 4/77 (5%)
Query: 119 IVRKEGHIYSLAASGDLLYTGSDS--KNIRVWKN--LKEFSGFKSNSGLVKAIIISGDSN 174
V +G + S S D S S K ++W L + ++G V+ S DS
Sbjct: 1087 FVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDST 1146
Query: 175 KIFTGHQDGKIRIWKVS 191
+ TG +G+IRIW VS
Sbjct: 1147 LLATGDDNGEIRIWNVS 1163
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 38/181 (20%), Positives = 65/181 (35%), Gaps = 36/181 (19%)
Query: 125 HIYSLAASGDLLYTGSDSKNIRVWK-NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
HI A L + SD I+VW L + + + VK + +S ++ + DG
Sbjct: 1014 HI-QFTADEKTLISSSDDAEIQVWNWQLDKCIFLRGHQETVKDFRLLKNS-RLLSWSFDG 1071
Query: 184 KIRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSL 243
+++W + N KD+V H V +
Sbjct: 1072 TVKVWNIITGNKE-----------KDFVC---------------------HQGTVLSCDI 1099
Query: 244 NAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS-LVFTGSADGTVKV 302
+ + S S DKT K+W L + H+ + DS L+ TG +G +++
Sbjct: 1100 SHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVRCSAFSVDSTLLATGDDNGEIRI 1159
Query: 303 W 303
W
Sbjct: 1160 W 1160
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAII-ISGDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 250 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 309
Query: 181 QDGKIRIWKVSR----KNASVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + ++ K+
Sbjct: 310 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 369
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
H V L+++ + + S + D+TL++WR C E A A S
Sbjct: 370 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR-----CFELDPARRREREKASAAKSS 424
Query: 290 LVFTG 294
L+ G
Sbjct: 425 LIHQG 429
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS--ADGTVKVWRRELQGK 310
G+ D+ +++W + CL +++AH + + + + +G A + +W+ K
Sbjct: 308 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 367
Query: 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353
+ L H + V +L ++ + A V ++D + W C
Sbjct: 368 VAE------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 404
Score = 32.7 bits (73), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 33/290 (11%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
G++ ++A + + S +I +++ + S+ +K + N + G
Sbjct: 127 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTSSA 180
Query: 184 KIRIWKVSR----KNASVHK-RVGSLPTFKDYVKSSVNPKNY-----VEVRRNRSVLKIR 233
++++W V + +N + H RVGSL ++ Y+ SS + + V V +
Sbjct: 181 EVQLWDVQQQKRLRNMTSHSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 239
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCK----CLESINAHDDAINSVV-AGFD 288
H V L + L SG D + VW + + L++ H A+ +V +
Sbjct: 240 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 299
Query: 289 SLVFT---GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345
S V G++D +++W + CL+ V + + + + + G +
Sbjct: 300 SNVLATGGGTSDRHIRIW-----NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 354
Query: 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWR 393
+ W+ ++ L+GH VL L + G V S +AD + LWR
Sbjct: 355 NQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 403
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 45/185 (24%), Positives = 74/185 (40%), Gaps = 25/185 (13%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAII-ISGDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 239 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 298
Query: 181 QDGKIRIWKVSR----KNASVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + ++ K+
Sbjct: 299 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 358
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDS 289
H V L+++ + + S + D+TL++WR C E A A S
Sbjct: 359 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR-----CFELDPARRREREKASAAKSS 413
Query: 290 LVFTG 294
L+ G
Sbjct: 414 LIHQG 418
Score = 35.8 bits (81), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS--ADGTVKVWRRELQGK 310
G+ D+ +++W + CL +++AH + + + + +G A + +W+ K
Sbjct: 297 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 356
Query: 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353
+ L H + V +L ++ + A V ++D + W C
Sbjct: 357 VAE------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 393
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 33/290 (11%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
G++ ++A + + S +I +++ + S+ +K + N + G
Sbjct: 116 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTSSA 169
Query: 184 KIRIWKVSR----KNASVHK-RVGSLPTFKDYVKSSVNPKNY-----VEVRRNRSVLKIR 233
++++W V + +N + H RVGSL ++ Y+ SS + + V V +
Sbjct: 170 EVQLWDVQQQKRLRNMTSHSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 228
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LESINAHDDAINSVV-AGFD 288
H V L + L SG D + VW + + L++ H A+ +V +
Sbjct: 229 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 288
Query: 289 SLVFT---GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345
S V G++D +++W + CL+ V + + + + + G +
Sbjct: 289 SNVLATGGGTSDRHIRIW-----NVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 343
Query: 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWR 393
+ W+ ++ L+GH VL L + G V S +AD + LWR
Sbjct: 344 NQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 392
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 73/164 (44%), Gaps = 10/164 (6%)
Query: 234 HYDAVSCLSLN-AEQG-LLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLV 291
H V CL L +E G SG DK VW + +C+++ H+ +NSV
Sbjct: 195 HGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAFETHESDVNSVRYYPSGDA 254
Query: 292 F-TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
F +GS D T +++ + + ++ +++ + +++ G +D +N
Sbjct: 255 FASGSDDATCRLYDLRADREVAIYSKESIIF----GASSVDFSLSGRLLFAGYNDYTINV 310
Query: 351 WECEKHLSHGGVLRGH--KMAVLCLAAAGNLVFSGSADRNICLW 392
W+ K S +L GH +++ L ++ G SGS D + +W
Sbjct: 311 WDVLKG-SRVSILFGHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
Score = 34.3 bits (77), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 31/135 (22%), Positives = 52/135 (38%), Gaps = 36/135 (26%)
Query: 132 SGDLLYTGSDSKNIRVW--KNLKEFSGFKSNSGLVKA--IIISGDSNKIFTGHQDGKIRI 187
SGD +GSD R++ + +E + + S + A + S +F G+ D I +
Sbjct: 251 SGDAFASGSDDATCRLYDLRADREVAIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINV 310
Query: 188 WKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQ 247
W V ++ +R + H + VS L ++ +
Sbjct: 311 WDV--------------------------------LKGSRVSILFGHENRVSTLRVSPDG 338
Query: 248 GLLYSGSWDKTLKVW 262
SGSWD TL+VW
Sbjct: 339 TAFCSGSWDHTLRVW 353
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 11/77 (14%)
Query: 323 HENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLR---GHKMAVLCLAAA--- 376
H N ++A + + S DG W+ E G +L+ GH VLCL A
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVES----GQLLQSFHGHGADVLCLDLAPSE 208
Query: 377 -GNLVFSGSADRNICLW 392
GN SG D+ +W
Sbjct: 209 TGNTFVSGGCDKKAMVW 225
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/78 (28%), Positives = 33/78 (42%), Gaps = 7/78 (8%)
Query: 118 SIVRKEGHIY-----SLAASGDLLYTGSDSKNIRVWKNLK--EFSGFKSNSGLVKAIIIS 170
+I KE I+ + SG LL+ G + I VW LK S + V + +S
Sbjct: 276 AIYSKESIIFGASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS 335
Query: 171 GDSNKIFTGHQDGKIRIW 188
D +G D +R+W
Sbjct: 336 PDGTAFCSGSWDHTLRVW 353
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 36.6 bits (83), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 38/154 (24%), Positives = 66/154 (42%), Gaps = 20/154 (12%)
Query: 130 AASGDLLYTGSDSKNIRVWKNLKEFSG------FKSNSGLVKAII-ISGDSNKIFTG--H 180
A G L +G + + VW + G F + G VKA+ SN + TG
Sbjct: 159 APDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGT 218
Query: 181 QDGKIRIWKVSR----KNASVHKRVGSL---PTFKDYVKSSVNPKNYVEVRRNRSVLKIR 233
D IRIW V H +V S+ P +K+ + +N + + + ++ K+
Sbjct: 219 SDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVA 278
Query: 234 ----HYDAVSCLSLNAEQGLLYSGSWDKTLKVWR 263
H V L+++ + + S + D+TL++WR
Sbjct: 279 ELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/103 (19%), Positives = 46/103 (44%), Gaps = 8/103 (7%)
Query: 253 GSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGS--ADGTVKVWRRELQGK 310
G+ D+ +++W + CL +++AH + + + + +G A + +W+ K
Sbjct: 217 GTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAK 276
Query: 311 GTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWEC 353
+ L H + V +L ++ + A V ++D + W C
Sbjct: 277 VAE------LKGHTSRVLSLTMSPDGATVASAAADETLRLWRC 313
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 59/290 (20%), Positives = 117/290 (40%), Gaps = 33/290 (11%)
Query: 124 GHIYSLAASGDLLYTGSDSKNIRVWKNLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQDG 183
G++ ++A + + S +I +++ + S+ +K + N + G
Sbjct: 36 GNVLAVALDNSVYLWSASSGDILQLLQMEQPGEYISSVAWIK------EGNYLAVGTSSA 89
Query: 184 KIRIWKVSR----KNASVHK-RVGSLPTFKDYVKSSVNPKNY-----VEVRRNRSVLKIR 233
++++W V + +N + H RVGSL ++ Y+ SS + + V V +
Sbjct: 90 EVQLWDVQQQKRLRNMTSHSARVGSL-SWNSYILSSGSRSGHIHHHDVRVAEHHVATLSG 148
Query: 234 HYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKC----LESINAHDDAINSVV-AGFD 288
H V L + L SG D + VW + + L++ H A+ +V +
Sbjct: 149 HSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQ 208
Query: 289 SLVFT---GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSD 345
S V G++D +++W + CL+ V + + + + + G +
Sbjct: 209 SNVLATGGGTSDRHIRIWN-----VCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQ 263
Query: 346 GLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWR 393
+ W+ ++ L+GH VL L + G V S +AD + LWR
Sbjct: 264 NQLVIWKYPT-MAKVAELKGHTSRVLSLTMSPDGATVASAAADETLRLWR 312
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 36.2 bits (82), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Query: 220 YVEVRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDA 279
Y + +++ H ++ + N E LL+S S D + VW + + L +++ H
Sbjct: 17 YFQGSHMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGT 76
Query: 280 INSV-VAGFDSLVFTGSADGTVKVW 303
I S+ V F TGSAD ++K+W
Sbjct: 77 IWSIDVDCFTKYCVTGSADYSIKLW 101
Score = 28.9 bits (63), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 22/95 (23%)
Query: 363 LRGHK--MAVLCLAAAGNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEE 420
L GH+ + + G+L+FS S D + +W S L L GHTG + + V+
Sbjct: 28 LTGHERPLTQVKYNKEGDLLFSCSKDSSASVWY---SLNGERLGTLDGHTGTIWSIDVD- 83
Query: 421 DRDHDHEYHQKGDQRWTVY--SGSLDKSVKVWRVS 453
+T Y +GS D S+K+W VS
Sbjct: 84 --------------CFTKYCVTGSADYSIKLWDVS 104
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 30/61 (49%), Gaps = 2/61 (3%)
Query: 133 GDLLYTGSDSKNIRVWKNL--KEFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKV 190
GDLL++ S + VW +L + ++G + +I + + TG D I++W V
Sbjct: 44 GDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSADYSIKLWDV 103
Query: 191 S 191
S
Sbjct: 104 S 104
Score = 28.5 bits (62), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 314 HCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAV--L 371
H A L HE +T + N+E +++ S D + W + G L GH + +
Sbjct: 22 HMKAIKLTGHERPLTQVKYNKEGDLLFSCSKDSSASVW-YSLNGERLGTLDGHTGTIWSI 80
Query: 372 CLAAAGNLVFSGSADRNICLW 392
+ +GSAD +I LW
Sbjct: 81 DVDCFTKYCVTGSADYSIKLW 101
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 35.4 bits (80), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 29/134 (21%), Positives = 53/134 (39%), Gaps = 35/134 (26%)
Query: 133 GDLLYTGSDSKNIRVWKNLKEFSGF----KSNSGLVKAIIISGDSNKIFTGHQDGKIRIW 188
G+ L GS + ++R W+ + ++G V + S D +K+FT D ++W
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGSKVFTASCDKTAKMW 113
Query: 189 KVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLNAEQG 248
+S A +++ ++ + +K H+ S
Sbjct: 114 DLSSNQA-------------------------IQIAQHDAPVKTIHWIKAPNYS------ 142
Query: 249 LLYSGSWDKTLKVW 262
+ +GSWDKTLK W
Sbjct: 143 CVMTGSWDKTLKFW 156
Score = 35.4 bits (80), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 47/192 (24%), Positives = 77/192 (40%), Gaps = 31/192 (16%)
Query: 236 DAVSCLSLNAEQ---GLLYSGSWDKTLKVWRISDC--KCLESINAHDDAINSVVAGFD-S 289
D++ CLS + L +GSW ++ W + D ++ H + V D S
Sbjct: 40 DSIGCLSFSPPTLPGNFLIAGSWANDVRCWEVQDSGQTIPKAQQMHTGPVLDVCWSDDGS 99
Query: 290 LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTAL--AVNQESAVVYCGSSDGL 347
VFT S D T K+W +L A + +H+ V + + V GS D
Sbjct: 100 KVFTASCDKTAKMW--DLSSNQ-----AIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKT 152
Query: 348 VNFWECEKHLSHGGVLRG----------HKMAVLCLAAAGNLVFSGSADRNICLWRREES 397
+ FW+ + + VL+ + MAV+ A G +V+ + +RR ES
Sbjct: 153 LKFWD-TRSSNPMMVLQLPERCYCADVIYPMAVVATAERGLIVY--QLENQPSEFRRIES 209
Query: 398 G---AHSCLAVL 406
H C+A+
Sbjct: 210 PLKHQHRCVAIF 221
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/95 (23%), Positives = 41/95 (43%), Gaps = 22/95 (23%)
Query: 377 GNLVFSGSADRNICLWRREESGAHSCLAVLTGHTGPVKCLAVEEDRDHDHEYHQKGDQRW 436
GN + +GS ++ W ++SG + HTGPV + +D
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSG-QTIPKAQQMHTGPVLDVCWSDDGSK------------ 100
Query: 437 TVYSGSLDKSVKVW--------RVSEHAPDLKGLH 463
V++ S DK+ K+W ++++H +K +H
Sbjct: 101 -VFTASCDKTAKMWDLSSNQAIQIAQHDAPVKTIH 134
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 35.4 bits (80), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 44/196 (22%), Positives = 72/196 (36%), Gaps = 24/196 (12%)
Query: 127 YSLAASGD--LLYTGSDSKNIRVWK--NLKEFSGFKSNSGLVKAIIISGDSNKIFTGHQD 182
Y+LA S D + ++ NI VW N F+ ++ I IS D K++TG D
Sbjct: 145 YALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLD 204
Query: 183 GKIRIWKVSRKNASVHKR--------VGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRH 234
+R W + R+ + + +G PT +++ + N + N+ H
Sbjct: 205 NTVRSWDL-REGRQLQQHDFTSQIFSLGYCPT-GEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 235 YDAVSCLSLNAEQGLLYSGSW------DKTLKVWRISDCKCLESINAHDDAINSVVAGFD 288
LSL Y G W D L WR + ++ ++ D
Sbjct: 263 LHESCVLSLK----FAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVDD 318
Query: 289 SLVFTGSADGTVKVWR 304
+ TGS D V+
Sbjct: 319 KYIVTGSGDKKATVYE 334
Score = 32.0 bits (71), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 30/147 (20%), Positives = 54/147 (36%), Gaps = 36/147 (24%)
Query: 129 LAASGDLLYTGSDSKNIRVWKNLKEFSGFK----SNSGLVKAIIISGDSNKIFTGHQDGK 184
L G L G ++ + +W K S++ A+ IS DS F+ DG
Sbjct: 105 LLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGN 164
Query: 185 IRIWKVSRKNASVHKRVGSLPTFKDYVKSSVNPKNYVEVRRNRSVLKIRHYDAVSCLSLN 244
I +W + N VR+ + H D SC+ ++
Sbjct: 165 IAVWDL---------------------------HNQTLVRQFQG-----HTDGASCIDIS 192
Query: 245 AEQGLLYSGSWDKTLKVWRISDCKCLE 271
+ L++G D T++ W + + + L+
Sbjct: 193 NDGTKLWTGGLDNTVRSWDLREGRQLQ 219
Score = 30.0 bits (66), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 42/183 (22%), Positives = 76/183 (41%), Gaps = 18/183 (9%)
Query: 224 RRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRIS------DCKCLESINAHD 277
R R + + H + V ++++ +Y+G +KVW IS L+ +N D
Sbjct: 40 RHARQINTLNHGEVVCAVTISNPTRHVYTGG-KGCVKVWDISHPGNKSPVSQLDCLN-RD 97
Query: 278 DAINSVVAGFD--SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQE 335
+ I S D +L+ G A T+ +W +L + + L A ALA++ +
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEA-STLSIW--DLAAPTPR--IKAELTSSAPACYALAISPD 152
Query: 336 SAVVYCGSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA--GNLVFSGSADRNICLWR 393
S V + SDG + W+ + +GH C+ + G +++G D + W
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQ-TLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWD 211
Query: 394 REE 396
E
Sbjct: 212 LRE 214
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 60/138 (43%), Gaps = 14/138 (10%)
Query: 222 EVRRNRSVL-----KIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAH 276
E+ N +++ K H D VS +S+ + SGS D +KVW ++ L S AH
Sbjct: 109 ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAH 168
Query: 277 DDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTK-HCLAQVLLKHENAVTALAVN 333
+ V A DS+ + S D + +W ++ C A L T+LA +
Sbjct: 169 AAQVTCVAASPHKDSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLP-----TSLAWH 223
Query: 334 -QESAVVYCGSSDGLVNF 350
Q+S V G +G V+
Sbjct: 224 PQQSEVFVFGDENGTVSL 241
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 26/105 (24%), Positives = 43/105 (40%), Gaps = 6/105 (5%)
Query: 291 VFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNF 350
+ S G V++W EL T +H++ V+ ++V GS D +
Sbjct: 96 ILVASDSGAVELW--ELDENETLIVSKFCKYEHDDIVSTVSVLSSGTQAVSGSKDICIKV 153
Query: 351 WECEKHLSHGGVLRGHKMAVLCLAAA---GNLVFSGSADRNICLW 392
W+ + + R H V C+AA+ ++ S S D I LW
Sbjct: 154 WDLAQQVVLSS-YRAHAAQVTCVAASPHKDSVFLSCSEDNRILLW 197
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 34.3 bits (77), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 38/86 (44%), Gaps = 9/86 (10%)
Query: 274 NAHDDAINSVVAGFD-----SLVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVT 328
AHDDAI SV G + V TGS D VKVW+ + + L L H+ V
Sbjct: 29 QAHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKW----RDERLDLQWSLEGHQLGVV 84
Query: 329 ALAVNQESAVVYCGSSDGLVNFWECE 354
++ ++ + S D + W+ E
Sbjct: 85 SVDISHTLPIAASSSLDAHIRLWDLE 110
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 34.3 bits (77), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSV--VAGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L + +H D I V ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 290 LVFTGSADGTVKVWR-----RELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341
++ + D + VW E + + ++L H ++ + N V C
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 393
Query: 342 G-SSDGLVNFWECEKHL 357
S D ++ W+ +++
Sbjct: 394 SVSEDNIMQIWQMAENI 410
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 69/333 (20%), Positives = 118/333 (35%), Gaps = 61/333 (18%)
Query: 153 EFSGFKSNSGLVKAIII---SGDSNKIFTGHQDGKIRIWKVSRKNASVHKRVGSLPTFKD 209
EF GF S +G ++ I G+ N+ Q+ I K + V D
Sbjct: 106 EFGGFGSVTGKIECEIKINHEGEVNRARYMPQNPHIIATKTPSSDVLVF----------D 155
Query: 210 YVKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAE-QGLLYSGSWDKTLKVW----- 262
Y K P E + L++R H LS N+ G L S S D T+ +W
Sbjct: 156 YTKHPAKPDPSGECNPD---LRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAG 212
Query: 263 ----RISDCKCLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCL 316
+I D K + H + V +SL + + D + +W T
Sbjct: 213 PKEGKIVDAKAI--FTGHSAVVEDVAWHLLHESLFGSVADDQKLMIWDTR---SNTTSKP 267
Query: 317 AQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA 375
+ ++ H V L+ N S + GS+D V W+ HK + +
Sbjct: 268 SHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHW 327
Query: 376 AGN---LVFSGSADRNICLW-----------RREESGAHSCLAVLTGHTGPVKCLAVEED 421
+ + ++ S DR + +W E G L + GHT +
Sbjct: 328 SPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKIS------- 380
Query: 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++ ++ W + S S D +++W+++E
Sbjct: 381 -----DFSWNPNEPWVICSVSEDNIMQIWQMAE 408
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 34.3 bits (77), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 246 EQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
E+ L+ +GS D + ++ + K ++++NAH D +N+++ S + + AD +K W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
Query: 305 RELQ 308
L+
Sbjct: 612 VVLE 615
Score = 32.7 bits (73), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 57/133 (42%), Gaps = 26/133 (19%)
Query: 247 QGLLYSGSW-----------DKTLKVWRISDCKCLESINAHDDAINS----VVAGFDSLV 291
QG +++ SW D T++VW ++ KC++ + + VVA + +
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
+ S DGT+ + EL G L + + H +TAL VN + GS DG + W
Sbjct: 313 ISLSLDGTLNFY--EL---GHDEVL-KTISGHNKGITALTVNP----LISGSYDGRIMEW 362
Query: 352 ECEK-HLSHGGVL 363
H H ++
Sbjct: 363 SSSSMHQDHSNLI 375
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 33.9 bits (76), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%)
Query: 246 EQGLLYSGSWDKTLKVWRIS-DCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWR 304
E+ L+ +GS D + ++ + K ++++NAH D +N+++ S + + AD +K W
Sbjct: 552 EEDLVATGSLDTNIFIYSVKRPXKIIKALNAHKDGVNNLLWETPSTLVSSGADACIKRWN 611
Query: 305 RELQ 308
L+
Sbjct: 612 VVLE 615
Score = 32.7 bits (73), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 32/120 (26%), Positives = 53/120 (44%), Gaps = 25/120 (20%)
Query: 247 QGLLYSGSW-----------DKTLKVWRISDCKCLESINAHDDAINS----VVAGFDSLV 291
QG +++ SW D T++VW ++ KC++ + + VVA + +
Sbjct: 253 QGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRI 312
Query: 292 FTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFW 351
+ S DGT+ + EL G L + + H +TAL VN + GS DG + W
Sbjct: 313 ISLSLDGTLNFY--EL---GHDEVL-KTISGHNKGITALTVNP----LISGSYDGRIXEW 362
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 33.5 bits (75), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVV--AGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L S +H D I V ++
Sbjct: 280 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 339
Query: 290 LVFTGSADGTVKVWR-----RELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341
++ + D + VW E + + ++L H ++ + N + C
Sbjct: 340 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 399
Query: 342 G-SSDGLVNFWECEKHL 357
S D ++ W+ +++
Sbjct: 400 SVSEDNIMQVWQMAENV 416
Score = 32.3 bits (72), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 120/332 (36%), Gaps = 59/332 (17%)
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDY 210
EF GF S G ++ I KI + +G++ + +NA V K S DY
Sbjct: 112 EFGGFGSVCGKIEIEI------KI---NHEGEVNRARYMPQNACVIATKTPSSDVLVFDY 162
Query: 211 VKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAE-QGLLYSGSWDKTLKVW------ 262
K P+ E + + L++R H LS N G L S S D T+ +W
Sbjct: 163 TKHPSKPEPSGECQPD---LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 219
Query: 263 ---RISDCKCLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLA 317
R+ D K + H + V +SL + + D + +W +
Sbjct: 220 KEHRVIDAKNI--FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP---S 274
Query: 318 QVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA 376
+ H V L+ N S + GS+D V W+ HK + + +
Sbjct: 275 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 334
Query: 377 GN---LVFSGSADRNICLW-----------RREESGAHSCLAVLTGHTGPVKCLAVEEDR 422
+ ++ S DR + +W E G L + GHT +
Sbjct: 335 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-------- 386
Query: 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++ ++ W + S S D ++VW+++E
Sbjct: 387 ----DFSWNPNEPWIICSVSEDNIMQVWQMAE 414
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVV--AGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L S +H D I V ++
Sbjct: 276 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 335
Query: 290 LVFTGSADGTVKVWR-----RELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341
++ + D + VW E + + ++L H ++ + N + C
Sbjct: 336 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 395
Query: 342 G-SSDGLVNFWECEKHL 357
S D ++ W+ +++
Sbjct: 396 SVSEDNIMQVWQMAENV 412
Score = 32.3 bits (72), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 120/332 (36%), Gaps = 59/332 (17%)
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDY 210
EF GF S G ++ I KI + +G++ + +NA V K S DY
Sbjct: 108 EFGGFGSVCGKIEIEI------KI---NHEGEVNRARYMPQNACVIATKTPSSDVLVFDY 158
Query: 211 VKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAE-QGLLYSGSWDKTLKVW------ 262
K P+ E + + L++R H LS N G L S S D T+ +W
Sbjct: 159 TKHPSKPEPSGECQPD---LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 215
Query: 263 ---RISDCKCLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLA 317
R+ D K + H + V +SL + + D + +W +
Sbjct: 216 KEHRVIDAKNI--FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP---S 270
Query: 318 QVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA 376
+ H V L+ N S + GS+D V W+ HK + + +
Sbjct: 271 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 330
Query: 377 GN---LVFSGSADRNICLW-----------RREESGAHSCLAVLTGHTGPVKCLAVEEDR 422
+ ++ S DR + +W E G L + GHT +
Sbjct: 331 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-------- 382
Query: 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++ ++ W + S S D ++VW+++E
Sbjct: 383 ----DFSWNPNEPWIICSVSEDNIMQVWQMAE 410
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 33.5 bits (75), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 60/137 (43%), Gaps = 13/137 (9%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSV--VAGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L S +H D I V ++
Sbjct: 278 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNET 337
Query: 290 LVFTGSADGTVKVWR-----RELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341
++ + D + VW E + + ++L H ++ + N + C
Sbjct: 338 ILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWIIC 397
Query: 342 G-SSDGLVNFWECEKHL 357
S D ++ W+ +++
Sbjct: 398 SVSEDNIMQVWQMAENV 414
Score = 32.3 bits (72), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 71/332 (21%), Positives = 120/332 (36%), Gaps = 59/332 (17%)
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDY 210
EF GF S G ++ I KI + +G++ + +NA V K S DY
Sbjct: 110 EFGGFGSVCGKIEIEI------KI---NHEGEVNRARYMPQNACVIATKTPSSDVLVFDY 160
Query: 211 VKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAE-QGLLYSGSWDKTLKVW------ 262
K P+ E + + L++R H LS N G L S S D T+ +W
Sbjct: 161 TKHPSKPEPSGECQPD---LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATP 217
Query: 263 ---RISDCKCLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVWRRELQGKGTKHCLA 317
R+ D K + H + V +SL + + D + +W +
Sbjct: 218 KEHRVIDAKNI--FTGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKP---S 272
Query: 318 QVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAAA 376
+ H V L+ N S + GS+D V W+ HK + + +
Sbjct: 273 HTVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWS 332
Query: 377 GN---LVFSGSADRNICLW-----------RREESGAHSCLAVLTGHTGPVKCLAVEEDR 422
+ ++ S DR + +W E G L + GHT +
Sbjct: 333 PHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELLFIHGGHTAKIS-------- 384
Query: 423 DHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++ ++ W + S S D ++VW+++E
Sbjct: 385 ----DFSWNPNEPWIICSVSEDNIMQVWQMAE 412
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 33.1 bits (74), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 30/144 (20%)
Query: 231 KIRHYDAVSCLSLNA---EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSVVAG 286
+I + C + A +Q L +G + L +W + + + S+ H + IN++
Sbjct: 61 EIEKAKPIKCGTFGATSLQQRYLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGI 120
Query: 287 FDSL-------VFTGSADGTVKVW-----------RRELQGKGTKHCLAQVLLKHENAVT 328
+ TGS DGTVKVW +QG+ + C
Sbjct: 121 GGLGIGEGAPEIVTGSRDGTVKVWDPRQKDDPVANMEPVQGENKRDCWTVAF-------- 172
Query: 329 ALAVNQESAVVYCGSSDGLVNFWE 352
A NQE VV G +G + ++
Sbjct: 173 GNAYNQEERVVCAGYDNGDIKLFD 196
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 33.1 bits (74), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 31/137 (22%), Positives = 59/137 (43%), Gaps = 13/137 (9%)
Query: 234 HYDAVSCLSLNA-EQGLLYSGSWDKTLKVWRISDCKC-LESINAHDDAINSV--VAGFDS 289
H V+CLS N + +L +GS DKT+ +W + + K L + +H D I V ++
Sbjct: 274 HTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNET 333
Query: 290 LVFTGSADGTVKVWR-----RELQGKGTKHCLAQVLL---KHENAVTALAVNQESAVVYC 341
++ + D + VW E + + ++L H ++ + N V C
Sbjct: 334 ILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGGHTAKISDFSWNPNEPWVIC 393
Query: 342 G-SSDGLVNFWECEKHL 357
S D + W+ +++
Sbjct: 394 SVSEDNIXQIWQXAENI 410
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 69/178 (38%), Gaps = 54/178 (30%)
Query: 246 EQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINSVVAGFDSLVFTGSADGTVKVWRR 305
+ G+ S S+DKTLKVW D L++ + V F+ V++
Sbjct: 111 DTGMFTSSSFDKTLKVW---DTNTLQTAD---------VFNFEETVYS-----------H 147
Query: 306 ELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVYCGSSDGLVNFWECEKHLSHGGVLRG 365
+ TKHCL V + V C G SH +L+G
Sbjct: 148 HMSPVSTKHCLVAVGTRGPK------------VQLCDLKSG---------SCSH--ILQG 184
Query: 366 HKMAVLCLAAAGN---LVFSGSADRNICLWR-REESGAHSCLAVLTGHTGPVKCLAVE 419
H+ +L ++ + ++ + SAD + LW R SG CL L H G K AVE
Sbjct: 185 HRQEILAVSWSPRYDYILATASADSRVKLWDVRRASG---CLITLDQHNGK-KSQAVE 238
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 29/136 (21%), Positives = 53/136 (38%), Gaps = 12/136 (8%)
Query: 293 TGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALA----VNQESAVVYCGSSDGLV 348
+G D +K+W+ E G+ + Q L H + V +A + ++ + S DG V
Sbjct: 184 SGGCDNLIKLWKEEEDGQWKEE---QKLEAHSDWVRDVAWAPSIGLPTSTIASCSQDGRV 240
Query: 349 NFWECEKHLSHG---GVLRGHKMAV--LCLAAAGNLVFSGSADRNICLWRREESGAHSCL 403
W C+ S+ +L V + + N++ D + LW+ G C+
Sbjct: 241 FIWTCDDASSNTWSPKLLHKFNDVVWHVSWSITANILAVSGGDNKVTLWKESVDGQWVCI 300
Query: 404 AVLTGHTGPVKCLAVE 419
+ + G V E
Sbjct: 301 SDVNKGQGSVSASVTE 316
Score = 30.0 bits (66), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 4/37 (10%)
Query: 363 LRGHKMAVLCLAAA----GNLVFSGSADRNICLWRRE 395
LRGH+ V +A A GN++ S S DR + +WR E
Sbjct: 53 LRGHEGPVWQVAWAHPMYGNILASCSYDRKVIIWREE 89
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 30.8 bits (68), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 73/333 (21%), Positives = 119/333 (35%), Gaps = 61/333 (18%)
Query: 153 EFSGFKSNSGLVKAIIISGDSNKIFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDY 210
EF GF S SG ++ I KI + +G++ + +N + K S DY
Sbjct: 104 EFGGFGSVSGKIEIEI------KI---NHEGEVNRARYMPQNPCIIATKTPSSDVLVFDY 154
Query: 211 VKSSVNPKNYVEVRRNRSVLKIR-HYDAVSCLSLNAE-QGLLYSGSWDKTLKVWRIS--- 265
K P E + L++R H LS N G L S S D T+ +W IS
Sbjct: 155 TKHPSKPDPSGECNPD---LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVP 211
Query: 266 ------DCKCLESINAHDDAINSVVAGF--DSLVFTGSADGTVKVW-RRELQGKGTKHCL 316
D K + H + V +SL + + D + +W R H +
Sbjct: 212 KEGKVVDAKTI--FTGHTAVVEDVSWHLLHESLFGSVADDQKLMIWDTRSNNTSKPSHSV 269
Query: 317 AQVLLKHENAVTALAVNQESAVVYC-GSSDGLVNFWECEKHLSHGGVLRGHKMAVLCLAA 375
H V L+ N S + GS+D V W+ HK + +
Sbjct: 270 D----AHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQW 325
Query: 376 AGN---LVFSGSADRNICLW-----------RREESGAHSCLAVLTGHTGPVKCLAVEED 421
+ + ++ S DR + +W E G L + GHT +
Sbjct: 326 SPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELLFIHGGHTAKIS------- 378
Query: 422 RDHDHEYHQKGDQRWTVYSGSLDKSVKVWRVSE 454
++ ++ W + S S D ++VW+++E
Sbjct: 379 -----DFSWNPNEPWVICSVSEDNIMQVWQMAE 406
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
+R +LK Y AV L + +L G+ + +KV + E AH I
Sbjct: 84 IRDGSKMLKRADYTAVDTAKLQMRRFIL--GTTEGDIKVLDSNFNLQREIDQAHVSEITK 141
Query: 283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
+ F S + + S D +K+W + G+ + L+ H VT +A+ V
Sbjct: 142 L-KFFPSGEALISSSQDMQLKIWSVK---DGSN---PRTLIGHRATVTDIAIIDRGRNVL 194
Query: 341 CGSSDGLVNFWEC 353
S DG + WEC
Sbjct: 195 SASLDGTIRLWEC 207
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 29.6 bits (65), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 54/133 (40%), Gaps = 11/133 (8%)
Query: 223 VRRNRSVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAINS 282
+R +LK Y AV L + +L G+ + +KV + E AH I
Sbjct: 87 IRDGSKMLKRADYTAVDTAKLQMRRFIL--GTTEGDIKVLDSNFNLQREIDQAHVSEITK 144
Query: 283 VVAGFDS--LVFTGSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQESAVVY 340
+ F S + + S D +K+W + G+ + L+ H VT +A+ V
Sbjct: 145 L-KFFPSGEALISSSQDMQLKIWSVK---DGSN---PRTLIGHRATVTDIAIIDRGRNVL 197
Query: 341 CGSSDGLVNFWEC 353
S DG + WEC
Sbjct: 198 SASLDGTIRLWEC 210
>pdb|1BT1|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BT1|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BT2|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Reduced Cu(I)-Cu(I) State
pdb|1BT2|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Reduced Cu(I)-Cu(I) State
pdb|1BT3|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes) In
The Native Cu(Ii)-Cu(Ii) State
pdb|1BUG|A Chain A, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
pdb|1BUG|B Chain B, Catechol Oxidase From Ipomoea Batatas (Sweet Potatoes)-
Inhibitor Complex With Phenylthiourea (Ptu)
Length = 345
Score = 28.9 bits (63), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 11/47 (23%)
Query: 5 GGGAIVVKPNNNLHRPKFGSFLYPESVIFSPRNNNNQDDGDYYSGHR 51
G G+I P+ +HR + PRN NN+D G++YS R
Sbjct: 231 GAGSIETSPHIPIHR-----------WVGDPRNTNNEDMGNFYSAGR 266
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 176 IFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDYV--------KSSVNPKNYVEVRR 225
I TG +DG+IRI+K++ K + + + + + F + +S N + E++
Sbjct: 233 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 292
Query: 226 NRSVLKIRHYD----AVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLESINAH 276
N V + +D V +S N +L S D +++W+ + + KC+ I A
Sbjct: 293 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 350
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 28.9 bits (63), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/118 (23%), Positives = 54/118 (45%), Gaps = 17/118 (14%)
Query: 176 IFTGHQDGKIRIWKVSRKNASV--HKRVGSLPTFKDYV--------KSSVNPKNYVEVRR 225
I TG +DG+IRI+K++ K + + + + + F + +S N + E++
Sbjct: 231 IATGCKDGRIRIFKITEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTEEKAELQS 290
Query: 226 NRSVLKIRHYD----AVSCLSLNAEQGLLYSGSWDKTLKVWRIS---DCKCLESINAH 276
N V + +D V +S N +L S D +++W+ + + KC+ I A
Sbjct: 291 NLQVELLSEHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLWKATYSNEFKCMSVITAQ 348
>pdb|1S4U|X Chain X, Crystal Structure Analysis Of The Beta-Propeller Protein
Ski8p
Length = 407
Score = 28.5 bits (62), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 228 SVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280
S+ + H V LS N L S WD L+ W + + + ++N H D I
Sbjct: 294 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 346
>pdb|1SQ9|A Chain A, Structure Of Ski8p, A Wd Repeat Protein Involved In Mrna
Degradation And Meiotic Recombination
Length = 397
Score = 28.5 bits (62), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 16/53 (30%), Positives = 24/53 (45%)
Query: 228 SVLKIRHYDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESINAHDDAI 280
S+ + H V LS N L S WD L+ W + + + ++N H D I
Sbjct: 284 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHCDDI 336
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 28.5 bits (62), Expect = 9.3, Method: Compositional matrix adjust.
Identities = 26/137 (18%), Positives = 58/137 (42%), Gaps = 8/137 (5%)
Query: 235 YDAVSCLSLNAEQGLLYSGSWDKTLKVWRISDCKCLESI-NAHDDAINSVVAGFDSLVFT 293
Y + C + + + D + ++R + + +I NA +++V + T
Sbjct: 148 YSSAPCTGVVCNNPEIVTVGEDGRINLFRADHKEAVRTIDNADSSTLHAVTFLRTPEILT 207
Query: 294 GSADGTVKVWRRELQGKGTKHCLAQVLLKHENAVTALAVNQ---ESAVVYCGSSDGLVNF 350
++ G +K+W QG +Q+L + V V++ + VV G DG+++
Sbjct: 208 VNSIGQLKIWDFRQQGNEP----SQILSLTGDRVPLHCVDRHPNQQHVVATGGQDGMLSI 263
Query: 351 WECEKHLSHGGVLRGHK 367
W+ + +L+ H+
Sbjct: 264 WDVRQGTMPVSLLKAHE 280
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.405
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,428,215
Number of Sequences: 62578
Number of extensions: 661512
Number of successful extensions: 2566
Number of sequences better than 100.0: 96
Number of HSP's better than 100.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 36
Number of HSP's that attempted gapping in prelim test: 1699
Number of HSP's gapped (non-prelim): 391
length of query: 473
length of database: 14,973,337
effective HSP length: 102
effective length of query: 371
effective length of database: 8,590,381
effective search space: 3187031351
effective search space used: 3187031351
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (25.0 bits)